Query 021593
Match_columns 310
No_of_seqs 260 out of 1936
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:11:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03772 MATH_HAUSP Herpesvirus 100.0 5.1E-27 1.1E-31 184.5 16.6 132 17-156 2-134 (137)
2 cd03772 MATH_HAUSP Herpesvirus 99.9 9E-27 2E-31 183.1 16.3 130 174-305 2-134 (137)
3 cd03775 MATH_Ubp21p Ubiquitin- 99.9 7.5E-27 1.6E-31 182.7 14.7 125 19-153 2-134 (134)
4 cd03774 MATH_SPOP Speckle-type 99.9 9.2E-27 2E-31 183.6 14.4 134 15-156 2-138 (139)
5 cd03775 MATH_Ubp21p Ubiquitin- 99.9 7.1E-26 1.5E-30 177.2 15.6 124 176-302 2-134 (134)
6 cd03780 MATH_TRAF5 Tumor Necro 99.9 1.8E-25 4E-30 176.1 12.5 134 18-152 1-147 (148)
7 cd03774 MATH_SPOP Speckle-type 99.9 7E-25 1.5E-29 172.8 14.5 128 174-306 4-139 (139)
8 cd03779 MATH_TRAF1 Tumor Necro 99.9 4.3E-25 9.3E-30 173.1 13.1 135 18-153 1-147 (147)
9 cd03777 MATH_TRAF3 Tumor Necro 99.9 1E-24 2.2E-29 177.9 14.2 136 15-153 36-184 (186)
10 cd03776 MATH_TRAF6 Tumor Necro 99.9 4.3E-25 9.2E-30 175.6 11.4 133 18-153 1-147 (147)
11 cd03773 MATH_TRIM37 Tripartite 99.9 7.7E-25 1.7E-29 171.2 12.6 127 15-153 2-130 (132)
12 cd00270 MATH_TRAF_C Tumor Necr 99.9 8.6E-25 1.9E-29 174.5 12.5 133 18-153 1-149 (149)
13 cd03781 MATH_TRAF4 Tumor Necro 99.9 1E-24 2.3E-29 174.3 12.8 133 18-153 1-154 (154)
14 cd03773 MATH_TRIM37 Tripartite 99.9 1.7E-24 3.7E-29 169.2 13.1 124 172-302 2-130 (132)
15 cd03780 MATH_TRAF5 Tumor Necro 99.9 5E-24 1.1E-28 167.9 12.9 128 175-302 1-148 (148)
16 cd03779 MATH_TRAF1 Tumor Necro 99.9 5.3E-24 1.1E-28 167.0 12.7 128 175-302 1-147 (147)
17 cd00270 MATH_TRAF_C Tumor Necr 99.9 5.9E-24 1.3E-28 169.7 11.7 126 175-302 1-149 (149)
18 cd03778 MATH_TRAF2 Tumor Necro 99.9 1.9E-23 4.2E-28 165.4 12.9 130 172-302 16-164 (164)
19 cd03778 MATH_TRAF2 Tumor Necro 99.9 3.1E-23 6.8E-28 164.2 14.0 136 15-152 16-163 (164)
20 cd03777 MATH_TRAF3 Tumor Necro 99.9 3.6E-23 7.8E-28 168.8 14.1 129 173-303 37-185 (186)
21 cd03781 MATH_TRAF4 Tumor Necro 99.9 2.5E-23 5.5E-28 166.3 12.9 126 175-302 1-154 (154)
22 cd03771 MATH_Meprin Meprin fam 99.9 3.1E-23 6.8E-28 165.5 12.8 132 17-152 1-166 (167)
23 cd03776 MATH_TRAF6 Tumor Necro 99.9 1.4E-23 2.9E-28 166.9 10.4 126 175-302 1-147 (147)
24 cd03771 MATH_Meprin Meprin fam 99.9 1.5E-22 3.2E-27 161.6 12.7 126 174-302 1-167 (167)
25 cd00121 MATH MATH (meprin and 99.9 8.8E-22 1.9E-26 152.0 15.1 124 176-302 2-126 (126)
26 cd00121 MATH MATH (meprin and 99.9 2E-21 4.4E-26 149.9 15.3 125 18-153 1-126 (126)
27 PF00917 MATH: MATH domain; I 99.8 1.3E-20 2.8E-25 144.4 9.8 117 24-154 1-119 (119)
28 PF00917 MATH: MATH domain; I 99.8 9.1E-21 2E-25 145.2 8.5 116 181-303 1-119 (119)
29 cd03783 MATH_Meprin_Alpha Mepr 99.8 2.6E-19 5.7E-24 141.1 10.5 133 18-152 2-166 (167)
30 cd03782 MATH_Meprin_Beta Mepri 99.8 3.7E-19 8.1E-24 139.4 10.6 132 17-152 1-166 (167)
31 cd03783 MATH_Meprin_Alpha Mepr 99.8 1.4E-18 2.9E-23 137.1 10.3 126 175-302 2-167 (167)
32 cd03782 MATH_Meprin_Beta Mepri 99.8 2.2E-18 4.7E-23 135.1 10.4 125 175-302 2-167 (167)
33 smart00061 MATH meprin and TRA 99.7 2.6E-17 5.6E-22 120.7 11.6 94 20-128 2-95 (95)
34 smart00061 MATH meprin and TRA 99.7 9.3E-17 2E-21 117.7 10.8 93 177-277 2-95 (95)
35 COG5077 Ubiquitin carboxyl-ter 99.5 8.4E-15 1.8E-19 136.8 5.8 134 14-158 35-174 (1089)
36 COG5077 Ubiquitin carboxyl-ter 99.4 2.3E-13 5E-18 127.3 7.6 130 173-306 37-173 (1089)
37 KOG1987 Speckle-type POZ prote 99.1 5.9E-11 1.3E-15 105.5 4.4 264 20-304 6-294 (297)
38 KOG1987 Speckle-type POZ prote 98.4 3.8E-06 8.3E-11 74.6 12.1 118 178-306 7-128 (297)
39 KOG1863 Ubiquitin carboxyl-ter 98.1 2.7E-06 5.9E-11 87.5 5.7 129 176-309 28-157 (1093)
40 KOG1863 Ubiquitin carboxyl-ter 98.0 5.5E-06 1.2E-10 85.3 5.4 131 18-160 27-157 (1093)
41 KOG0297 TNF receptor-associate 97.3 0.00019 4E-09 66.0 3.1 81 16-97 278-365 (391)
42 KOG0297 TNF receptor-associate 96.9 0.00079 1.7E-08 61.9 3.4 78 173-250 278-365 (391)
No 1
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.95 E-value=5.1e-27 Score=184.52 Aligned_cols=132 Identities=18% Similarity=0.371 Sum_probs=110.2
Q ss_pred CceEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCC-CCCCeEEEEEEecCCCCCCCCcEEEEEEEEEEE
Q 021593 17 PTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSK-NVKEHISVYLAMENTSSLQHGWEVYAVFRLFLL 95 (310)
Q Consensus 17 ~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~-~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l~ 95 (310)
.|+|+|+|+|||.+ ++.++|+.|.+||++|+|.+||+|.... +..+||||||.|.+... ...|++.|+|+|+|+
T Consensus 2 ~~~~~~~I~~~S~l----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~-~~~w~i~a~~~~~l~ 76 (137)
T cd03772 2 EATFSFTVERFSRL----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESD-STSWSCHAQAVLRII 76 (137)
T ss_pred CcEEEEEECCcccC----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCC-CCCCeEEEEEEEEEE
Confidence 58999999999998 4789999999999999999999996421 34589999999976542 348999999999999
Q ss_pred eCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEee
Q 021593 96 DQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK 156 (310)
Q Consensus 96 n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~ 156 (310)
|+++........ ..+.|......|||.+||+|++|+++.++||+||+|+|+|+|++-+
T Consensus 77 ~~~~~~~~~~~~---~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 77 NYKDDEPSFSRR---ISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred cCCCCcccEEEe---eeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 998543333222 4567876667899999999999987789999999999999998765
No 2
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.95 E-value=9e-27 Score=183.10 Aligned_cols=130 Identities=16% Similarity=0.309 Sum_probs=110.0
Q ss_pred CceEEEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCC--CCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEcCC
Q 021593 174 SIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRH--GTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQA 251 (310)
Q Consensus 174 ~~~~~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~--~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~ 251 (310)
.++++|+|.|||.+ ++.++|+.|.+||++|+|.+||+|... +..+++|+||.|.... ....|++.|+|+|+|+||+
T Consensus 2 ~~~~~~~I~~~S~l-~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~-~~~~w~i~a~~~~~l~~~~ 79 (137)
T cd03772 2 EATFSFTVERFSRL-SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAES-DSTSWSCHAQAVLRIINYK 79 (137)
T ss_pred CcEEEEEECCcccC-CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcC-CCCCCeEEEEEEEEEEcCC
Confidence 46899999999998 678999999999999999999999654 2347999999997643 3347999999999999998
Q ss_pred CC-cceeccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEe
Q 021593 252 QA-RHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG 305 (310)
Q Consensus 252 ~~-~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~ 305 (310)
+. .+......+.|......|||++||+|++|+++.+|||+||+|+|||+|+|-.
T Consensus 80 ~~~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 80 DDEPSFSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred CCcccEEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 53 3444455578877677999999999999987668999999999999999865
No 3
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.95 E-value=7.5e-27 Score=182.72 Aligned_cols=125 Identities=27% Similarity=0.577 Sum_probs=106.5
Q ss_pred eEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC----CCCCcEEEEEEEEEE
Q 021593 19 HYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS----LQHGWEVYAVFRLFL 94 (310)
Q Consensus 19 ~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~----~~~~w~~~~~f~~~l 94 (310)
+|+|+|.|||.+ ++.+.|++|.+|||+|+|.+||+|.. ..+|+||||.+.+.+. .+.+|.+.|+|+|.|
T Consensus 2 ~f~w~I~~fS~~----~~~~~S~~F~vGG~~W~l~~yP~G~~---~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l 74 (134)
T cd03775 2 SFTWRIKNWSEL----EKKVHSPKFKCGGFEWRILLFPQGNS---QTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVI 74 (134)
T ss_pred cEEEEECCcccC----CcceeCCCEEECCeeEEEEEeCCCCC---CCCeEEEEEEecCcccccccCCCCCeEEEEEEEEE
Confidence 699999999996 57999999999999999999999975 2789999999976543 256899999999999
Q ss_pred EeCCCCceEEeeccccceeeccCCCccccccceeeccccccC----CCCeeecCEEEEEEEEE
Q 021593 95 LDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDA----SNGFLLEDTCVFGAEVF 153 (310)
Q Consensus 95 ~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~----~~~yl~dD~l~i~~~v~ 153 (310)
+||.++....... ..+.|+....+|||.+||++++|++| ++|||+||+|+|+|.|+
T Consensus 75 ~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 75 SNPGDPSIQLSNV---AHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EcCCCCccceEcc---ceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 9997655433333 57899877788999999999999954 68999999999999874
No 4
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.95 E-value=9.2e-27 Score=183.57 Aligned_cols=134 Identities=28% Similarity=0.443 Sum_probs=111.1
Q ss_pred CCCceEEEEEcccccccccccceEEcCcEEEcCe---eEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEE
Q 021593 15 APPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGY---KWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFR 91 (310)
Q Consensus 15 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~---~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~ 91 (310)
+..-+|+|+|+|||.+++..++.+.|++|.+||+ +|+|.+||+|.. ++..+|+||||.+.+.. .+++.|+|+
T Consensus 2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~-~~~~~~iSlyL~l~~~~----~~~v~a~f~ 76 (139)
T cd03774 2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKFK 76 (139)
T ss_pred ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCC-CCCCCeEEEEEEEccCC----CCcEEEEEE
Confidence 4567899999999998654477999999999984 999999999986 45678999999997532 367999999
Q ss_pred EEEEeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEee
Q 021593 92 LFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK 156 (310)
Q Consensus 92 ~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~ 156 (310)
|.|+|+++......... ..+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|++
T Consensus 77 ~~l~n~~~~~~~~~~~~--~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 77 FSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EEEEecCCCeeeeeccc--CcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 99999987654332221 3467765 47899999999999987778999999999999999985
No 5
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.94 E-value=7.1e-26 Score=177.21 Aligned_cols=124 Identities=22% Similarity=0.444 Sum_probs=106.2
Q ss_pred eEEEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCC----CCCCCeEEEEEEEEEEcCC
Q 021593 176 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTT----LTPGSKIYAEFTLRLLDQA 251 (310)
Q Consensus 176 ~~~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~----~~~~w~~~~~~~~~l~~~~ 251 (310)
+|+|+|.+||.+ ++.+.|++|.+||++|+|.+||+|+.. .+|+|+||++..... .+.+|++.|+|+|+|+||.
T Consensus 2 ~f~w~I~~fS~~-~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~ 78 (134)
T cd03775 2 SFTWRIKNWSEL-EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPG 78 (134)
T ss_pred cEEEEECCcccC-CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCC
Confidence 589999999996 478999999999999999999999865 579999999976443 2468999999999999997
Q ss_pred CCc-ceeccceeecCCCCCCCChhcccCccccCCC----CCCeeeCCEEEEEEEEE
Q 021593 252 QAR-HIAGKADFWFSASNPESGWARYVSFTYFNKP----GNGCLVKDVCLVEAEVT 302 (310)
Q Consensus 252 ~~~-~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~----~~~~l~dD~l~i~~~v~ 302 (310)
++. +......+.|+....+|||.+||++++|++| ++|||+||+|+|+|.|.
T Consensus 79 ~~~~~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 79 DPSIQLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred CCccceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 654 3445567899887789999999999999954 57999999999999873
No 6
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.93 E-value=1.8e-25 Score=176.10 Aligned_cols=134 Identities=20% Similarity=0.292 Sum_probs=106.4
Q ss_pred ceEEEEEcccccccc-c-ccc--eEEcCcE--EEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEEEEE
Q 021593 18 THYTVKIQSFSLLLK-N-SVE--KYESGDF--EAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVYAVF 90 (310)
Q Consensus 18 ~~~~~~I~nfs~~~~-~-~~~--~~~S~~f--~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~~~f 90 (310)
|.|.|+|.+|+++++ . .++ .++|++| .++||+|+|.+||||.+ .+.++|+||||+++.++.+ -..|++.+++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCccccccCcceEEEE
Confidence 689999999999975 2 355 7999999 88999999999999987 5678899999999986443 2479999999
Q ss_pred EEEEEeCCCCceEEeec-cc-cceeeccCC----CccccccceeeccccccCCCCeeecCEEEEEEEE
Q 021593 91 RLFLLDQNKGNFLILQD-AM-GAERRFHRL----KREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV 152 (310)
Q Consensus 91 ~~~l~n~~~~~~~~~~~-~~-~~~~~F~~~----~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v 152 (310)
+|+|+||++........ .. ...+.|+.. +..||+.+||++++|+.+..+||.||+|.|+|.|
T Consensus 80 tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 80 TLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 99999998544321100 00 023568654 4579999999999998433599999999999977
No 7
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.93 E-value=7e-25 Score=172.84 Aligned_cols=128 Identities=27% Similarity=0.459 Sum_probs=106.5
Q ss_pred CceEEEEEccccccC---CCeeecccEEeCCe---EEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 021593 174 SIKHVWRIENFSKLR---SECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRL 247 (310)
Q Consensus 174 ~~~~~w~i~~fs~~~---~~~~~S~~f~~~g~---~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l 247 (310)
.-+|+|+|.+||.+. ++.+.|+.|.+||+ +|+|++||+|...+..+|+||||++.... .+++.|+|+|.|
T Consensus 4 ~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~----~~~v~a~f~~~l 79 (139)
T cd03774 4 KFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCP----KSEVRAKFKFSI 79 (139)
T ss_pred EEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCC----CCcEEEEEEEEE
Confidence 357999999999864 67899999999984 99999999998655678999999997532 367999999999
Q ss_pred EcCCCCcce--eccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEee
Q 021593 248 LDQAQARHI--AGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 306 (310)
Q Consensus 248 ~~~~~~~~~--~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~ 306 (310)
+||++++.. .....+.|.. ..+|||.+||++++|+++.+|||+||+|+|+|+|+|+++
T Consensus 80 ~n~~~~~~~~~~~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~~ 139 (139)
T cd03774 80 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 139 (139)
T ss_pred EecCCCeeeeecccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEcC
Confidence 999876532 2233467764 578999999999999876679999999999999999863
No 8
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.93 E-value=4.3e-25 Score=173.10 Aligned_cols=135 Identities=22% Similarity=0.278 Sum_probs=104.3
Q ss_pred ceEEEEEccccccccc--c--cceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCcEEEEEE
Q 021593 18 THYTVKIQSFSLLLKN--S--VEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS-LQHGWEVYAVF 90 (310)
Q Consensus 18 ~~~~~~I~nfs~~~~~--~--~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~-~~~~w~~~~~f 90 (310)
|+|+|+|.||++..+. . ...++||+|..+ ||+|+|.+||||.+ .+.++|+||||+++.++. ....|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDG-AGKGTHISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCcceEEEE
Confidence 7899999999987652 2 247999999886 99999999999987 567889999999997643 23479999999
Q ss_pred EEEEEeCCCCceEEeeccc-cceeecc----CCCccccccceeeccccccCCCCeeecCEEEEEEEEE
Q 021593 91 RLFLLDQNKGNFLILQDAM-GAERRFH----RLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF 153 (310)
Q Consensus 91 ~~~l~n~~~~~~~~~~~~~-~~~~~F~----~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~ 153 (310)
+|+|+||.+.......... ...+.|+ ..+..||+.+||++++|+.+..+||+||+++|+|+|.
T Consensus 80 tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 80 TFMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 9999999764432111100 0135686 3345799999999999983223999999999999873
No 9
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.92 E-value=1e-24 Score=177.89 Aligned_cols=136 Identities=17% Similarity=0.219 Sum_probs=107.2
Q ss_pred CCCceEEEEEcccccccc-c-ccc--eEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCcEEE
Q 021593 15 APPTHYTVKIQSFSLLLK-N-SVE--KYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS-LQHGWEVY 87 (310)
Q Consensus 15 ~~~~~~~~~I~nfs~~~~-~-~~~--~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~-~~~~w~~~ 87 (310)
...|+|.|+|.||++.++ . .++ .++|++|.+| ||+|+|.+||||.+ .+.++|+||||+++.++. ....|++.
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g-~~~~~~iSvyl~L~~ge~D~~L~WP~~ 114 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK 114 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCCcee
Confidence 446999999999999864 2 344 7999999999 99999999999987 567889999999998653 23479999
Q ss_pred EEEEEEEEeCCCCceEEeec--cccceeeccC-C---CccccccceeeccccccCCCCeeecCEEEEEEEEE
Q 021593 88 AVFRLFLLDQNKGNFLILQD--AMGAERRFHR-L---KREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF 153 (310)
Q Consensus 88 ~~f~~~l~n~~~~~~~~~~~--~~~~~~~F~~-~---~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~ 153 (310)
++++|+|+||.+........ .......|+. . +..||+..||++++|+ .++||+||+|.|+|.|.
T Consensus 115 ~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 115 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD 184 (186)
T ss_pred EEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence 99999999997532211100 0002245762 2 3579999999999999 78999999999999885
No 10
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.92 E-value=4.3e-25 Score=175.57 Aligned_cols=133 Identities=25% Similarity=0.301 Sum_probs=104.2
Q ss_pred ceEEEEEcccccccc-c-ccc--eEEcCcEEE--cCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCcEEEEEE
Q 021593 18 THYTVKIQSFSLLLK-N-SVE--KYESGDFEA--GGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS-LQHGWEVYAVF 90 (310)
Q Consensus 18 ~~~~~~I~nfs~~~~-~-~~~--~~~S~~f~~--~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~-~~~~w~~~~~f 90 (310)
|+|.|+|.|||.+++ + .++ .++|++|.+ |||+|+|.+||||.. ++..+||||||+++.+.. ...+|++.++|
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~-~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPE-ARCPNYISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCcccCCccccee
Confidence 689999999998754 2 355 488999986 799999999999987 567889999999987654 24579999999
Q ss_pred EEEEEeCCCCceEEee--ccccceeeccC-----CCccccccceeeccccccCCCCeeecCEEEEEEEEE
Q 021593 91 RLFLLDQNKGNFLILQ--DAMGAERRFHR-----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF 153 (310)
Q Consensus 91 ~~~l~n~~~~~~~~~~--~~~~~~~~F~~-----~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~ 153 (310)
+|+|+||.++...... ........|.. ....|||.+||++++|+ .++||+||+|+|+|+|.
T Consensus 80 ~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLL--QRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhh--hCCCccCCEEEEEEEEC
Confidence 9999999864332110 00002346763 23579999999999999 67899999999999984
No 11
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.92 E-value=7.7e-25 Score=171.20 Aligned_cols=127 Identities=24% Similarity=0.427 Sum_probs=104.0
Q ss_pred CCCceEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEEEEE
Q 021593 15 APPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFL 94 (310)
Q Consensus 15 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l 94 (310)
+..++++|+|.|||.+++ .++.++|++|.+|||+|+|.+||+|.. ++..+||||||.+.+.. .|.+.++|+|+|
T Consensus 2 ~~~~~~~~~I~~fS~~~~-~~~~~~S~~F~vgG~~W~i~~yP~G~~-~~~~~~lSl~L~l~~~~----~~~~~~~~~l~l 75 (132)
T cd03773 2 PPYDSATFTLENFSTLRQ-SADPVYSDPLNVDGLCWRLKVYPDGNG-EVRGNFLSVFLELCSGL----GEASKYEYRVEM 75 (132)
T ss_pred CCCcccEEEECChhhhhc-CCcceeCCCeEeCCccEEEEEECCCCC-CCCCCEEEEEEEeecCC----CCceeEEEEEEE
Confidence 356789999999999864 267899999999999999999999986 45678999999987642 367889999999
Q ss_pred EeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeec--CEEEEEEEEE
Q 021593 95 LDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLE--DTCVFGAEVF 153 (310)
Q Consensus 95 ~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~d--D~l~i~~~v~ 153 (310)
+||.++....... ..+.|.. ..+|||.+||++++|. ++|||.| |+|+|+|.|+
T Consensus 76 lnq~~~~~~~~~~---~~~~f~~-~~~wG~~~Fi~~~~L~--~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 76 VHQANPTKNIKRE---FASDFEV-GECWGYNRFFRLDLLI--NEGYLLPENDTLILRFSVR 130 (132)
T ss_pred EcCCCCccceEEe---ccccccC-CCCcCHHHhccHHHHh--hCCCcCCCCCEEEEEEEEe
Confidence 9995333333222 4567766 4679999999999998 5899999 9999999885
No 12
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.92 E-value=8.6e-25 Score=174.53 Aligned_cols=133 Identities=26% Similarity=0.368 Sum_probs=104.4
Q ss_pred ceEEEEEcccccccc----cccceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEEEEE
Q 021593 18 THYTVKIQSFSLLLK----NSVEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVYAVF 90 (310)
Q Consensus 18 ~~~~~~I~nfs~~~~----~~~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~~~f 90 (310)
|+|+|+|.|||.+++ ..++.++|++|.+| ||+|+|.+||+|.. ++..+||||||++.++... ...|++.++|
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~-~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDG-TGKGTHLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCC-CCCCCEEEEEEEEeccCCCccccCCccceE
Confidence 689999999999865 13578999999999 99999999999986 4567899999999876542 4579999999
Q ss_pred EEEEEeCCCC--ceEEeec--cccceeecc-----CCCccccccceeeccccccCCCCeeecCEEEEEEEEE
Q 021593 91 RLFLLDQNKG--NFLILQD--AMGAERRFH-----RLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF 153 (310)
Q Consensus 91 ~~~l~n~~~~--~~~~~~~--~~~~~~~F~-----~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~ 153 (310)
+|.|+||.++ ....... .......|. ....+|||.+||++++|+ +.+||+||+|+|+|+|.
T Consensus 80 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 80 TLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLE--SRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhc--cCCCEeCCEEEEEEEEC
Confidence 9999999874 1211100 000123454 134679999999999999 56899999999999873
No 13
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.92 E-value=1e-24 Score=174.28 Aligned_cols=133 Identities=21% Similarity=0.302 Sum_probs=105.1
Q ss_pred ceEEEEEcccccccc---c-ccceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCcEEEEEE
Q 021593 18 THYTVKIQSFSLLLK---N-SVEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQ-HGWEVYAVF 90 (310)
Q Consensus 18 ~~~~~~I~nfs~~~~---~-~~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~-~~w~~~~~f 90 (310)
|.|.|+|.|||.+++ . .++.+.|++|.+| ||+|+|.+||||.. .+..+|+|+||+++.++... ..|++.++|
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNG-SGEGSHLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCC-CCCCCEEEEEEEEecCCcccccCCceeeEE
Confidence 689999999999875 2 2578999999999 99999999999987 56788999999999865433 489999999
Q ss_pred EEEEEeCCCCc--e--EEeec--cccceeeccC--------CCccccccceeeccccccCCCCeeecCEEEEEEEEE
Q 021593 91 RLFLLDQNKGN--F--LILQD--AMGAERRFHR--------LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF 153 (310)
Q Consensus 91 ~~~l~n~~~~~--~--~~~~~--~~~~~~~F~~--------~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~ 153 (310)
+|+|+||.+.. . ..... .......|+. ...+||+..||++++|+ .++||+||+|+|+|+|.
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEeC
Confidence 99999998641 1 11000 0001345552 33569999999999999 68999999999999873
No 14
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.92 E-value=1.7e-24 Score=169.23 Aligned_cols=124 Identities=23% Similarity=0.437 Sum_probs=105.0
Q ss_pred CCCceEEEEEccccccC--CCeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEc
Q 021593 172 APSIKHVWRIENFSKLR--SECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLD 249 (310)
Q Consensus 172 ~~~~~~~w~i~~fs~~~--~~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~ 249 (310)
|+.++++|+|.+||.+. ++.+.|+.|.++|++|+|.+||+|+..+.++|||+||.+... ..|.+.++|+|+|+|
T Consensus 2 ~~~~~~~~~I~~fS~~~~~~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~----~~~~~~~~~~l~lln 77 (132)
T cd03773 2 PPYDSATFTLENFSTLRQSADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSG----LGEASKYEYRVEMVH 77 (132)
T ss_pred CCCcccEEEECChhhhhcCCcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecC----CCCceeEEEEEEEEc
Confidence 67788999999999985 568999999999999999999999876667899999998763 136788999999999
Q ss_pred CCC-CcceeccceeecCCCCCCCChhcccCccccCCCCCCeeeC--CEEEEEEEEE
Q 021593 250 QAQ-ARHIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVK--DVCLVEAEVT 302 (310)
Q Consensus 250 ~~~-~~~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~d--D~l~i~~~v~ 302 (310)
|.+ .++......+.|.. ..+|||.+||++++|++ +|||+| |+|+|+|.|.
T Consensus 78 q~~~~~~~~~~~~~~f~~-~~~wG~~~Fi~~~~L~~--~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 78 QANPTKNIKREFASDFEV-GECWGYNRFFRLDLLIN--EGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCCCccceEEeccccccC-CCCcCHHHhccHHHHhh--CCCcCCCCCEEEEEEEEe
Confidence 954 33555555677865 46799999999999986 799999 9999999985
No 15
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.91 E-value=5e-24 Score=167.92 Aligned_cols=128 Identities=24% Similarity=0.355 Sum_probs=104.6
Q ss_pred ceEEEEEccccccC-----CC--eeecccE--EeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEEEEEE
Q 021593 175 IKHVWRIENFSKLR-----SE--CCDSQVF--SSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAEFT 244 (310)
Q Consensus 175 ~~~~w~i~~fs~~~-----~~--~~~S~~f--~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~~~ 244 (310)
+.++|+|.+|++++ ++ .+.|+.| .++||+|+|++||+|.+.+.++|||+||+++..+.+ ...|++.++++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~t 80 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVT 80 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEEEEE
Confidence 46899999999986 34 7999999 899999999999999988788899999999875332 35799999999
Q ss_pred EEEEcCCCCc-ce--ec---cceeecCCC----CCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593 245 LRLLDQAQAR-HI--AG---KADFWFSAS----NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 302 (310)
Q Consensus 245 ~~l~~~~~~~-~~--~~---~~~~~f~~~----~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~ 302 (310)
|.|+||.+.. ++ .. .....|... +.+||+++||++++|+.++.+||+||+|+|+|.|.
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 81 LMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred EEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence 9999997542 21 11 113568654 56799999999999986445999999999999873
No 16
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.91 E-value=5.3e-24 Score=166.95 Aligned_cols=128 Identities=20% Similarity=0.328 Sum_probs=102.7
Q ss_pred ceEEEEEccccccC-----C--CeeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCC-CCCCCCeEEEEEE
Q 021593 175 IKHVWRIENFSKLR-----S--ECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADST-TLTPGSKIYAEFT 244 (310)
Q Consensus 175 ~~~~w~i~~fs~~~-----~--~~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~-~~~~~w~~~~~~~ 244 (310)
+.++|+|.||+++. + ..++||.|... ||+|+|.+||+|.+.+.++|+|+||+++..+ +....|++.++++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~t 80 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKVT 80 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEEE
Confidence 46899999999765 1 36999999854 9999999999999877788999999998753 3334799999999
Q ss_pred EEEEcCCCCccee--ccc---eeecC----CCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593 245 LRLLDQAQARHIA--GKA---DFWFS----ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 302 (310)
Q Consensus 245 ~~l~~~~~~~~~~--~~~---~~~f~----~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~ 302 (310)
|.|+||.+..... ... .+.|+ ..+.+||+++||++++|+.+..+||+||+++|+|+|.
T Consensus 81 fsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 81 FMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 9999997644321 111 25686 3456799999999999986334899999999999984
No 17
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.91 E-value=5.9e-24 Score=169.70 Aligned_cols=126 Identities=24% Similarity=0.407 Sum_probs=102.3
Q ss_pred ceEEEEEccccccC-------CCeeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEEEEEE
Q 021593 175 IKHVWRIENFSKLR-------SECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAEFT 244 (310)
Q Consensus 175 ~~~~w~i~~fs~~~-------~~~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~~~ 244 (310)
+.|+|+|.+|+.++ ++.+.|+.|.+| |++|+|++||+|...+.++|+||||++.+...+ ...|++.++|+
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~ 80 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKIT 80 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEE
Confidence 47999999999974 358999999999 999999999999876667899999999875432 45799999999
Q ss_pred EEEEcCCCC---cceecc-----ceeecC-----CCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593 245 LRLLDQAQA---RHIAGK-----ADFWFS-----ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 302 (310)
Q Consensus 245 ~~l~~~~~~---~~~~~~-----~~~~f~-----~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~ 302 (310)
|.|+||.++ ++.... ....|. ....+|||.+||++++|++ .|||+||+|+|+|+|.
T Consensus 81 ~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~--~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 81 LTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLES--RGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhcc--CCCEeCCEEEEEEEEC
Confidence 999999874 222111 123454 1357899999999999986 5899999999999984
No 18
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.90 E-value=1.9e-23 Score=165.38 Aligned_cols=130 Identities=22% Similarity=0.331 Sum_probs=107.1
Q ss_pred CCCceEEEEEccccccCC-------CeeecccEE--eCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCC-CCCeEEE
Q 021593 172 APSIKHVWRIENFSKLRS-------ECCDSQVFS--SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYA 241 (310)
Q Consensus 172 ~~~~~~~w~i~~fs~~~~-------~~~~S~~f~--~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~ 241 (310)
...+.++|+|.||+++.. ..++||.|. .+||+|+|++||+|++.+++.|||+|+++++++.++ ..|++..
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~WPf~~ 95 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccCCceee
Confidence 346999999999998761 378999887 358999999999999988889999999999987766 7899999
Q ss_pred EEEEEEEcCCCCcceeccce-----eecC----CCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593 242 EFTLRLLDQAQARHIAGKAD-----FWFS----ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 302 (310)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~~-----~~f~----~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~ 302 (310)
+++|+|+||.+++++..... ..|. ..+.+|||+.|+++++|+.+ .+||+||+|.|+|.|.
T Consensus 96 ~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIVD 164 (164)
T ss_pred EEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEEC
Confidence 99999999987655532221 1342 34568999999999999864 5999999999999873
No 19
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.90 E-value=3.1e-23 Score=164.20 Aligned_cols=136 Identities=22% Similarity=0.318 Sum_probs=106.7
Q ss_pred CCCceEEEEEccccccccc--c--cceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCcEEE
Q 021593 15 APPTHYTVKIQSFSLLLKN--S--VEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQ-HGWEVY 87 (310)
Q Consensus 15 ~~~~~~~~~I~nfs~~~~~--~--~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~-~~w~~~ 87 (310)
...|+|+|+|.||+++.+. . ...++||+|..+ ||+|+|.+||||.+ .+.+.|||||+++++++.++ .+|++.
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g-~~~g~~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEecCCcCcccCCcee
Confidence 4479999999999998752 2 347999999764 89999999999987 57788999999999998766 799999
Q ss_pred EEEEEEEEeCCCCceEEeecc-ccceeeccC----CCccccccceeeccccccCCCCeeecCEEEEEEEE
Q 021593 88 AVFRLFLLDQNKGNFLILQDA-MGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEV 152 (310)
Q Consensus 88 ~~f~~~l~n~~~~~~~~~~~~-~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v 152 (310)
.+++|+|+||++..+....-. -.....|.+ .+..|||..|+++++|..+ .+||+||+|.|+|.|
T Consensus 95 ~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~-~~Yv~dDtlfIk~~V 163 (164)
T cd03778 95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAK-NSYVRDDAIFIKAIV 163 (164)
T ss_pred eEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHcccc-CCcccCCeEEEEEEE
Confidence 999999999986443221000 001113532 3457999999999999842 699999999999977
No 20
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.90 E-value=3.6e-23 Score=168.78 Aligned_cols=129 Identities=22% Similarity=0.376 Sum_probs=105.4
Q ss_pred CCceEEEEEccccccC-----CC--eeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCC-CCCCCCeEEEE
Q 021593 173 PSIKHVWRIENFSKLR-----SE--CCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADST-TLTPGSKIYAE 242 (310)
Q Consensus 173 ~~~~~~w~i~~fs~~~-----~~--~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~-~~~~~w~~~~~ 242 (310)
..+.|+|+|.+|+..+ ++ .++|+.|.++ ||+|+|.+||+|.+.+.++|+|+||++++++ +....|++.++
T Consensus 37 ~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP~~~~ 116 (186)
T cd03777 37 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 116 (186)
T ss_pred cceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCceeEE
Confidence 3699999999999875 33 7999999999 9999999999999877788999999998753 33357999999
Q ss_pred EEEEEEcCCCC-ccee-----ccceeecC-CC---CCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEE
Q 021593 243 FTLRLLDQAQA-RHIA-----GKADFWFS-AS---NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTV 303 (310)
Q Consensus 243 ~~~~l~~~~~~-~~~~-----~~~~~~f~-~~---~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i 303 (310)
++|.|+||.+. .++. ......|. .. +.+||+++||++++|+. .+||+||+|+|+|.|..
T Consensus 117 ~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~--~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 117 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhcc--CCcEeCCEEEEEEEEec
Confidence 99999999752 1211 11224576 22 45799999999999986 78999999999999863
No 21
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.90 E-value=2.5e-23 Score=166.28 Aligned_cols=126 Identities=23% Similarity=0.335 Sum_probs=102.4
Q ss_pred ceEEEEEccccccC-------CCeeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCC-CCCeEEEEEE
Q 021593 175 IKHVWRIENFSKLR-------SECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYAEFT 244 (310)
Q Consensus 175 ~~~~w~i~~fs~~~-------~~~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~~~ 244 (310)
+.|.|+|.+|+.++ ++.+.|+.|.++ |++|+|++||+|...+.++|+|+||++++.+.+. ..|++.++++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~~ 80 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRIT 80 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEEE
Confidence 47899999999875 257999999999 9999999999998877788999999999854333 4799999999
Q ss_pred EEEEcCCCC--c---ceec-----cceeecCC--------CCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593 245 LRLLDQAQA--R---HIAG-----KADFWFSA--------SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 302 (310)
Q Consensus 245 ~~l~~~~~~--~---~~~~-----~~~~~f~~--------~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~ 302 (310)
|+|+||.++ . ++.. .....|+. .+.+||+.+||++++|+. .+||+||+|+|+|+|.
T Consensus 81 ~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 81 FTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLKK--RNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHhh--CCcccCCEEEEEEEeC
Confidence 999999764 1 1111 11234542 345799999999999996 6899999999999984
No 22
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.90 E-value=3.1e-23 Score=165.51 Aligned_cols=132 Identities=21% Similarity=0.321 Sum_probs=101.1
Q ss_pred CceEEEEEccccccc-cc-ccceEEcCcE-EEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCcE-EEEEEE
Q 021593 17 PTHYTVKIQSFSLLL-KN-SVEKYESGDF-EAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS-LQHGWE-VYAVFR 91 (310)
Q Consensus 17 ~~~~~~~I~nfs~~~-~~-~~~~~~S~~f-~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~-~~~~w~-~~~~f~ 91 (310)
+..|+|+|.|||+++ +. .++.++|++| .+|||+|+|.+||||.. + ..+||||||++++++. ...+|+ +.++++
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~-~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t 78 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTE-S-YPGYTGLYFHLCSGENDDVLEWPCPNRQAT 78 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCC-C-CCCcceEEEEEecCCccccccCcceeEEEE
Confidence 468999999999996 33 4778999998 99999999999999987 4 6889999999987644 346799 589999
Q ss_pred EEEEeCCCCc---eEEee----cc---c--cceeeccCC-----------------CccccccceeeccccccCCCCeee
Q 021593 92 LFLLDQNKGN---FLILQ----DA---M--GAERRFHRL-----------------KREWGFDEFIPIKAFNDASNGFLL 142 (310)
Q Consensus 92 ~~l~n~~~~~---~~~~~----~~---~--~~~~~F~~~-----------------~~~~G~~~fi~~~~l~~~~~~yl~ 142 (310)
|+|+||.+.. .+... +. . .....|++. ..+|||..||++++|. ..+||+
T Consensus 79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~--~r~ylk 156 (167)
T cd03771 79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR--RRDFLK 156 (167)
T ss_pred EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhc--cCCCCc
Confidence 9999997421 11110 10 0 000113321 2479999999999999 677999
Q ss_pred cCEEEEEEEE
Q 021593 143 EDTCVFGAEV 152 (310)
Q Consensus 143 dD~l~i~~~v 152 (310)
||+|.|++++
T Consensus 157 ~dtl~i~~~~ 166 (167)
T cd03771 157 GDDLIILLDF 166 (167)
T ss_pred CCEEEEEEEe
Confidence 9999999986
No 23
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.90 E-value=1.4e-23 Score=166.93 Aligned_cols=126 Identities=22% Similarity=0.292 Sum_probs=100.9
Q ss_pred ceEEEEEccccccC-----CC--eeecccEEe--CCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCC-CCCCCeEEEEEE
Q 021593 175 IKHVWRIENFSKLR-----SE--CCDSQVFSS--GDQKWQIQLYPKGRRHGTGTHLAVYLALADSTT-LTPGSKIYAEFT 244 (310)
Q Consensus 175 ~~~~w~i~~fs~~~-----~~--~~~S~~f~~--~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~-~~~~w~~~~~~~ 244 (310)
+.|+|+|.+|+.++ ++ .+.|+.|.+ +|++|+|++||+|...+..+|||+||+++.... ...+|++.++++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a~~~ 80 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQGTIT 80 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccceeE
Confidence 47999999999754 33 488999985 799999999999998777789999999987543 345799999999
Q ss_pred EEEEcCCCCc-cee-----ccceeecCC-----CCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593 245 LRLLDQAQAR-HIA-----GKADFWFSA-----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 302 (310)
Q Consensus 245 ~~l~~~~~~~-~~~-----~~~~~~f~~-----~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~ 302 (310)
|.|+||.++. ++. ......|.. .+.+|||.+||++++|+. .+||+||+|+|+|+|.
T Consensus 81 ~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~--~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 81 LTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLLQ--RGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhhh--CCCccCCEEEEEEEEC
Confidence 9999998632 221 112245653 346799999999999986 5899999999999984
No 24
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.89 E-value=1.5e-22 Score=161.65 Aligned_cols=126 Identities=22% Similarity=0.386 Sum_probs=99.1
Q ss_pred CceEEEEEccccccC-----CCeeecccE-EeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCC-CCCCCe-EEEEEEE
Q 021593 174 SIKHVWRIENFSKLR-----SECCDSQVF-SSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTT-LTPGSK-IYAEFTL 245 (310)
Q Consensus 174 ~~~~~w~i~~fs~~~-----~~~~~S~~f-~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~-~~~~w~-~~~~~~~ 245 (310)
+..|+|+|.+||.++ ++.+.|+.| .++||+|+|++||+|+.. .++|+||||++++.+. ...+|+ +.++++|
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t~ 79 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQATM 79 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEEEE
Confidence 357999999999985 348999998 899999999999999987 7789999999987543 346799 5899999
Q ss_pred EEEcCCCC----cceec----cc--------eeecCC-----------------CCCCCChhcccCccccCCCCCCeeeC
Q 021593 246 RLLDQAQA----RHIAG----KA--------DFWFSA-----------------SNPESGWARYVSFTYFNKPGNGCLVK 292 (310)
Q Consensus 246 ~l~~~~~~----~~~~~----~~--------~~~f~~-----------------~~~~~G~~~fi~~~~L~~~~~~~l~d 292 (310)
+|+||... .++.. .. ...|++ ++.+|||++||++++|+. .+||+|
T Consensus 80 ~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~--r~ylk~ 157 (167)
T cd03771 80 TLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRR--RDFLKG 157 (167)
T ss_pred EEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhcc--CCCCcC
Confidence 99999731 12111 00 011221 345899999999999997 679999
Q ss_pred CEEEEEEEEE
Q 021593 293 DVCLVEAEVT 302 (310)
Q Consensus 293 D~l~i~~~v~ 302 (310)
|+|+|+++++
T Consensus 158 dtl~i~~~~~ 167 (167)
T cd03771 158 DDLIILLDFE 167 (167)
T ss_pred CEEEEEEEeC
Confidence 9999999874
No 25
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.88 E-value=8.8e-22 Score=151.97 Aligned_cols=124 Identities=31% Similarity=0.564 Sum_probs=103.9
Q ss_pred eEEEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCCcc
Q 021593 176 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARH 255 (310)
Q Consensus 176 ~~~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~ 255 (310)
.|+|+|.+|+...++.++|+.|.++|+.|+|.+||+|... ..+++|+||+|.........|++.++|+|+|++++++++
T Consensus 2 ~~~~~i~~~~~~~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (126)
T cd00121 2 KHTWKIVNFSELEGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKS 80 (126)
T ss_pred EEEEEECCCCCCCCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCcc
Confidence 6899999999855789999999999999999999999865 467999999998765444679999999999999986555
Q ss_pred eeccceeecC-CCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEE
Q 021593 256 IAGKADFWFS-ASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVT 302 (310)
Q Consensus 256 ~~~~~~~~f~-~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~ 302 (310)
........|. ....+|||.+||++++|++ ..+++||+|+|+|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 81 LSKSFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK 126 (126)
T ss_pred ceEeccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence 5444455553 4568899999999999997 3449999999999984
No 26
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.88 E-value=2e-21 Score=149.93 Aligned_cols=125 Identities=34% Similarity=0.556 Sum_probs=101.6
Q ss_pred ceEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEEEEEEeC
Q 021593 18 THYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQ 97 (310)
Q Consensus 18 ~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l~n~ 97 (310)
++|.|+|.+|+... ++.++|+.|.++|+.|+|.+||+|.. . ..+||||||.|.+.......|.+.++|+|+|+|+
T Consensus 1 ~~~~~~i~~~~~~~---~~~~~S~~f~~~g~~W~l~~~p~~~~-~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (126)
T cd00121 1 GKHTWKIVNFSELE---GESIYSPPFEVGGYKWRIRIYPNGDG-E-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQ 75 (126)
T ss_pred CEEEEEECCCCCCC---CcEEECCCEEEcCEeEEEEEEcCCCC-C-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECC
Confidence 47999999999822 68999999999999999999999875 2 5789999999987765456799999999999999
Q ss_pred CCCceEEeeccccceeecc-CCCccccccceeeccccccCCCCeeecCEEEEEEEEE
Q 021593 98 NKGNFLILQDAMGAERRFH-RLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVF 153 (310)
Q Consensus 98 ~~~~~~~~~~~~~~~~~F~-~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~ 153 (310)
++.+..... ....|. ....+|||.+||++++|. +..++.||+|+|+|+|.
T Consensus 76 ~~~~~~~~~----~~~~~~~~~~~~~G~~~fi~~~~l~--~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 76 NGGKSLSKS----FTHVFFSEKGSGWGFPKFISWDDLE--DSYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCccceEe----ccCCcCCCCCCCCChHHeeEHHHhc--cCCcEECCEEEEEEEEC
Confidence 844433221 233442 456889999999999999 34449999999999983
No 27
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.84 E-value=1.3e-20 Score=144.36 Aligned_cols=117 Identities=33% Similarity=0.582 Sum_probs=96.0
Q ss_pred EcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCcEEEEEEEEEEEeCCCCce
Q 021593 24 IQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQ-HGWEVYAVFRLFLLDQNKGNF 102 (310)
Q Consensus 24 I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~-~~w~~~~~f~~~l~n~~~~~~ 102 (310)
|+|||++.+ ++..+.|+.|.++|++|+|.+||+|+ .++|++||+|..+.... .+|++.++++++|+++.++..
T Consensus 1 i~nfs~l~~-~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 74 (119)
T PF00917_consen 1 IKNFSKLKE-GEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSI 74 (119)
T ss_dssp ETTGGGHHT-SEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEE
T ss_pred CcccceEeC-CCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCcc
Confidence 789999973 13344558889999999999999975 57999999999885543 589999999999999998874
Q ss_pred EEeeccccce-eeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEE
Q 021593 103 LILQDAMGAE-RRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFV 154 (310)
Q Consensus 103 ~~~~~~~~~~-~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v 154 (310)
... .. +.|+.. .+|||.+||++++|.+ ..|+.||+++|+|+|+|
T Consensus 75 ~~~-----~~~~~F~~~-~~~g~~~fi~~~~l~~--~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 75 SKR-----IKSHSFNNP-SSWGWSSFISWEDLED--PYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEE-----EECEEECTT-SEEEEEEEEEHHHHTT--CTTSBTTEEEEEEEEEE
T ss_pred eee-----eeeeEEeee-cccchhheeEHHHhCc--cCCeECCEEEEEEEEEC
Confidence 332 33 788875 7799999999999994 34899999999999986
No 28
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.84 E-value=9.1e-21 Score=145.23 Aligned_cols=116 Identities=35% Similarity=0.580 Sum_probs=94.6
Q ss_pred EccccccC-CC-eeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCC-CCCeEEEEEEEEEEcCCCCccee
Q 021593 181 IENFSKLR-SE-CCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYAEFTLRLLDQAQARHIA 257 (310)
Q Consensus 181 i~~fs~~~-~~-~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~~~~~~l~~~~~~~~~~ 257 (310)
|+|||++. ++ ...|+.+.++|++|+|.+||+|+ ++++++||+|....... .+|++.++++++|+++.++....
T Consensus 1 i~nfs~l~~~~~~~~s~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 76 (119)
T PF00917_consen 1 IKNFSKLKEGEEYSSSFVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKSISK 76 (119)
T ss_dssp ETTGGGHHTSEEEEEEEESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCEEEE
T ss_pred CcccceEeCCCcEECCCeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCccee
Confidence 68999997 33 34458889999999999999987 46999999999875543 57999999999999998876222
Q ss_pred ccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEE
Q 021593 258 GKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTV 303 (310)
Q Consensus 258 ~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i 303 (310)
....+.|+.. .+|||.+||++++|+++ .|++||+|+|+|+|+|
T Consensus 77 ~~~~~~F~~~-~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 77 RIKSHSFNNP-SSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEECEEECTT-SEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred eeeeeEEeee-cccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence 2125788764 77999999999999974 3899999999999987
No 29
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.80 E-value=2.6e-19 Score=141.15 Aligned_cols=133 Identities=20% Similarity=0.340 Sum_probs=101.8
Q ss_pred ceEEEEEccccccccc--ccceEEcCcEEEc-CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEE-EEEEEE
Q 021593 18 THYTVKIQSFSLLLKN--SVEKYESGDFEAG-GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEV-YAVFRL 92 (310)
Q Consensus 18 ~~~~~~I~nfs~~~~~--~~~~~~S~~f~~~-g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~-~~~f~~ 92 (310)
..++|+|.||+++.+. .+..++||+|+.. ||+.+|.+||||.+..+.+.|+|||++++.++.+ -.+|++ .-+++|
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl 81 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII 81 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence 5689999999998752 4678999999884 9999999999998633578899999999998764 468995 569999
Q ss_pred EEEeCCCCc---eEEe----eccccc------eeeccCC--------------CccccccceeeccccccCCCCeeecCE
Q 021593 93 FLLDQNKGN---FLIL----QDAMGA------ERRFHRL--------------KREWGFDEFIPIKAFNDASNGFLLEDT 145 (310)
Q Consensus 93 ~l~n~~~~~---~~~~----~~~~~~------~~~F~~~--------------~~~~G~~~fi~~~~l~~~~~~yl~dD~ 145 (310)
+|+||++.. .+.. .+.... ...|++. ..++||..||++++|. ..+||+||+
T Consensus 82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~--~r~yikdDt 159 (167)
T cd03783 82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLR--RRSFLKNDD 159 (167)
T ss_pred EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHh--hCCcccCCe
Confidence 999997521 1110 000000 1124432 3579999999999999 789999999
Q ss_pred EEEEEEE
Q 021593 146 CVFGAEV 152 (310)
Q Consensus 146 l~i~~~v 152 (310)
|.|.+++
T Consensus 160 lfI~~~~ 166 (167)
T cd03783 160 LIIFVDF 166 (167)
T ss_pred EEEEEec
Confidence 9999876
No 30
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.80 E-value=3.7e-19 Score=139.42 Aligned_cols=132 Identities=20% Similarity=0.309 Sum_probs=102.1
Q ss_pred CceEEEEEccccccccc--ccceEEcCcEEE-cCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEE-EEEE
Q 021593 17 PTHYTVKIQSFSLLLKN--SVEKYESGDFEA-GGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVY-AVFR 91 (310)
Q Consensus 17 ~~~~~~~I~nfs~~~~~--~~~~~~S~~f~~-~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~-~~f~ 91 (310)
+..++|+|.||+++.+. .+..++||+|.. .||+.++.+||||.+ .+ ++|||||++++.++.+ -.+|++. -+++
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g-~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit 78 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTD-DY-PGNLAIYLHLTSGPNDDQLQWPCPWQQAT 78 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCC-CC-CCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence 35799999999998763 367899999955 599999999999997 34 6899999999998764 4689999 8999
Q ss_pred EEEEeCCC---CceEEee--ccc--cc-e--eec--cCC-----------------CccccccceeeccccccCCCCeee
Q 021593 92 LFLLDQNK---GNFLILQ--DAM--GA-E--RRF--HRL-----------------KREWGFDEFIPIKAFNDASNGFLL 142 (310)
Q Consensus 92 ~~l~n~~~---~~~~~~~--~~~--~~-~--~~F--~~~-----------------~~~~G~~~fi~~~~l~~~~~~yl~ 142 (310)
|+|+||++ ...+... .+. .. . ..| ++. +.++||+.||++++|. ...||+
T Consensus 79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~--~r~yik 156 (167)
T cd03782 79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLR--SRDFIK 156 (167)
T ss_pred EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHh--hcCccc
Confidence 99999975 2222211 000 00 1 134 322 4689999999999999 789999
Q ss_pred cCEEEEEEEE
Q 021593 143 EDTCVFGAEV 152 (310)
Q Consensus 143 dD~l~i~~~v 152 (310)
||.+.|-+++
T Consensus 157 dD~ifi~~~~ 166 (167)
T cd03782 157 GDDVIFLLTM 166 (167)
T ss_pred CCeEEEEEec
Confidence 9999998775
No 31
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.78 E-value=1.4e-18 Score=137.11 Aligned_cols=126 Identities=18% Similarity=0.347 Sum_probs=98.3
Q ss_pred ceEEEEEccccccC-----CCeeecccEEe-CCeEEEEEEeeCCCCC-CCCcEEEEEEEecCCCCC-CCCCeE-EEEEEE
Q 021593 175 IKHVWRIENFSKLR-----SECCDSQVFSS-GDQKWQIQLYPKGRRH-GTGTHLAVYLALADSTTL-TPGSKI-YAEFTL 245 (310)
Q Consensus 175 ~~~~w~i~~fs~~~-----~~~~~S~~f~~-~g~~w~i~~yp~g~~~-~~~~~ls~~L~~~~~~~~-~~~w~~-~~~~~~ 245 (310)
..++|+|.||+++. ...++||.|.. .||+++|++||+|++. +++.|+|||+++++++.+ ...|++ .-+++|
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~itl 81 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAII 81 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEEE
Confidence 46899999999876 35799999976 5999999999999874 567899999999986544 468995 679999
Q ss_pred EEEcCCCC----cce----ecc---c------eeecCC--------------CCCCCChhcccCccccCCCCCCeeeCCE
Q 021593 246 RLLDQAQA----RHI----AGK---A------DFWFSA--------------SNPESGWARYVSFTYFNKPGNGCLVKDV 294 (310)
Q Consensus 246 ~l~~~~~~----~~~----~~~---~------~~~f~~--------------~~~~~G~~~fi~~~~L~~~~~~~l~dD~ 294 (310)
.|+||++. .++ ... . ...|++ ++.++||+.||+++.|+. .+||+||+
T Consensus 82 ~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~--r~yikdDt 159 (167)
T cd03783 82 TVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRR--RSFLKNDD 159 (167)
T ss_pred EEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhh--CCcccCCe
Confidence 99999641 122 100 0 112433 245899999999999997 89999999
Q ss_pred EEEEEEEE
Q 021593 295 CLVEAEVT 302 (310)
Q Consensus 295 l~i~~~v~ 302 (310)
|.|.++++
T Consensus 160 lfI~~~~~ 167 (167)
T cd03783 160 LIIFVDFE 167 (167)
T ss_pred EEEEEecC
Confidence 99998763
No 32
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.77 E-value=2.2e-18 Score=135.12 Aligned_cols=125 Identities=21% Similarity=0.268 Sum_probs=98.5
Q ss_pred ceEEEEEccccccC-----CCeeecccEE-eCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEE-EEEEEE
Q 021593 175 IKHVWRIENFSKLR-----SECCDSQVFS-SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIY-AEFTLR 246 (310)
Q Consensus 175 ~~~~w~i~~fs~~~-----~~~~~S~~f~-~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~-~~~~~~ 246 (310)
..++|+|.||+++. ...++||.|. ..||+++|.+||+|++.+ +.|||||+++++++.+ ...|++. -+++|.
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit~~ 80 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQATMM 80 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEEEE
Confidence 46899999999976 3578999775 579999999999999875 6799999999986544 4689999 899999
Q ss_pred EEcCCC----Ccceec--c-------c-eeec--CCC-----------------CCCCChhcccCccccCCCCCCeeeCC
Q 021593 247 LLDQAQ----ARHIAG--K-------A-DFWF--SAS-----------------NPESGWARYVSFTYFNKPGNGCLVKD 293 (310)
Q Consensus 247 l~~~~~----~~~~~~--~-------~-~~~f--~~~-----------------~~~~G~~~fi~~~~L~~~~~~~l~dD 293 (310)
|+||++ +.++.. . . ...| ++. +.++||+.||++++|+. +.||+||
T Consensus 81 LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~--r~yikdD 158 (167)
T cd03782 81 LLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRS--RDFIKGD 158 (167)
T ss_pred EEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhh--cCcccCC
Confidence 999964 123211 0 0 1124 222 57899999999999997 7899999
Q ss_pred EEEEEEEEE
Q 021593 294 VCLVEAEVT 302 (310)
Q Consensus 294 ~l~i~~~v~ 302 (310)
+|+|-++++
T Consensus 159 ~ifi~~~~e 167 (167)
T cd03782 159 DVIFLLTME 167 (167)
T ss_pred eEEEEEecC
Confidence 999987763
No 33
>smart00061 MATH meprin and TRAF homology.
Probab=99.74 E-value=2.6e-17 Score=120.71 Aligned_cols=94 Identities=28% Similarity=0.463 Sum_probs=79.6
Q ss_pred EEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEEEEEEeCCC
Q 021593 20 YTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNK 99 (310)
Q Consensus 20 ~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l~n~~~ 99 (310)
++|+|+||+.+.. ++.++|++|.++|++|+|.+||+ .+|||+||.|.+....+.+|++.|+|+++|+|+++
T Consensus 2 ~~~~~~~~~~~~~--~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~ 72 (95)
T smart00061 2 LSHTFKNVSRLEE--GESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNG 72 (95)
T ss_pred ceeEEEchhhccc--CceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCC
Confidence 5899999999854 68899999999999999999998 37999999998775545589999999999999998
Q ss_pred CceEEeeccccceeeccCCCcccccccee
Q 021593 100 GNFLILQDAMGAERRFHRLKREWGFDEFI 128 (310)
Q Consensus 100 ~~~~~~~~~~~~~~~F~~~~~~~G~~~fi 128 (310)
+.... . ..+.|.. ..+|||.+||
T Consensus 73 ~~~~~--~---~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 73 KSLSK--K---DKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CEEee--e---eeEEEcC-CCccceeeEC
Confidence 65532 2 5688887 6789999886
No 34
>smart00061 MATH meprin and TRAF homology.
Probab=99.71 E-value=9.3e-17 Score=117.73 Aligned_cols=93 Identities=24% Similarity=0.349 Sum_probs=79.0
Q ss_pred EEEEEccccccC-CCeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCCcc
Q 021593 177 HVWRIENFSKLR-SECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARH 255 (310)
Q Consensus 177 ~~w~i~~fs~~~-~~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~ 255 (310)
++|.|++|+.+. ++.+.|+.|.++|++|+|.+||++ +|+|+||.|.+....+.+|++.++++|+|+||++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~S~~f~~~g~~W~i~~~p~~------~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~ 75 (95)
T smart00061 2 LSHTFKNVSRLEEGESYFSPSEEHFNIPWRLKIYRKN------GFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL 75 (95)
T ss_pred ceeEEEchhhcccCceEeCChhEEcCceeEEEEEEcC------CEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE
Confidence 579999999985 678999999999999999999983 4999999998765555579999999999999987654
Q ss_pred eeccceeecCCCCCCCChhccc
Q 021593 256 IAGKADFWFSASNPESGWARYV 277 (310)
Q Consensus 256 ~~~~~~~~f~~~~~~~G~~~fi 277 (310)
.....+.|.. ..+|||.+||
T Consensus 76 -~~~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 76 -SKKDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred -eeeeeEEEcC-CCccceeeEC
Confidence 3455788886 6789999886
No 35
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.4e-15 Score=136.76 Aligned_cols=134 Identities=31% Similarity=0.501 Sum_probs=110.0
Q ss_pred cCCCceEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC---CCCCcEEEEEE
Q 021593 14 EAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS---LQHGWEVYAVF 90 (310)
Q Consensus 14 ~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~---~~~~w~~~~~f 90 (310)
|...-.|+|+|++|+.+. ++..||+|.+||+.|+|.++|+|+.. .+ +||||.....+. ....|.|+++|
T Consensus 35 e~~~~sftW~vk~wsel~----~k~~Sp~F~vg~~twki~lfPqG~nq---~~-~sVyLe~~pqe~e~~~gk~~~ccaqF 106 (1089)
T COG5077 35 ELLEMSFTWKVKRWSELA----KKVESPPFSVGGHTWKIILFPQGNNQ---CN-VSVYLEYEPQELEETGGKYYDCCAQF 106 (1089)
T ss_pred HHhhcccceecCChhhhh----hhccCCcccccCeeEEEEEecccCCc---cc-cEEEEEeccchhhhhcCcchhhhhhe
Confidence 455678999999999995 47889999999999999999999852 22 899999887532 12359999999
Q ss_pred EEEEEeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCC---eeecCEEEEEEEEEEeeec
Q 021593 91 RLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNG---FLLEDTCVFGAEVFVSKER 158 (310)
Q Consensus 91 ~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~---yl~dD~l~i~~~v~v~~~~ 158 (310)
.|.|-|...+....... .-++|+....+||+.+|+.+..|..|..| |+.+|++.|++.|+|++.+
T Consensus 107 af~Is~p~~pti~~iN~---sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdP 174 (1089)
T COG5077 107 AFDISNPKYPTIEYINK---SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDP 174 (1089)
T ss_pred eeecCCCCCCchhhhhc---ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCC
Confidence 99999887644332211 45899999999999999999999876554 8999999999999999985
No 36
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.3e-13 Score=127.29 Aligned_cols=130 Identities=21% Similarity=0.421 Sum_probs=107.7
Q ss_pred CCceEEEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCC---CCCCCCeEEEEEEEEEEc
Q 021593 173 PSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADST---TLTPGSKIYAEFTLRLLD 249 (310)
Q Consensus 173 ~~~~~~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~---~~~~~w~~~~~~~~~l~~ 249 (310)
....++|+|++++.+.. ...||.|.+||+.|+|.++|+|+.. ..+|+||+....+ .....|.|+++|.|.|-+
T Consensus 37 ~~~sftW~vk~wsel~~-k~~Sp~F~vg~~twki~lfPqG~nq---~~~sVyLe~~pqe~e~~~gk~~~ccaqFaf~Is~ 112 (1089)
T COG5077 37 LEMSFTWKVKRWSELAK-KVESPPFSVGGHTWKIILFPQGNNQ---CNVSVYLEYEPQELEETGGKYYDCCAQFAFDISN 112 (1089)
T ss_pred hhcccceecCChhhhhh-hccCCcccccCeeEEEEEecccCCc---cccEEEEEeccchhhhhcCcchhhhhheeeecCC
Confidence 35679999999999874 7899999999999999999999853 2489999987532 112359999999999998
Q ss_pred CCCCc-ceeccceeecCCCCCCCChhcccCccccCCCCCC---eeeCCEEEEEEEEEEEee
Q 021593 250 QAQAR-HIAGKADFWFSASNPESGWARYVSFTYFNKPGNG---CLVKDVCLVEAEVTVHGI 306 (310)
Q Consensus 250 ~~~~~-~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~---~l~dD~l~i~~~v~i~~~ 306 (310)
...+. ....+..|+|.....+|||.+|+.+..|..|..| |+.+|++.|.|.|.|+++
T Consensus 113 p~~pti~~iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 113 PKYPTIEYINKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred CCCCchhhhhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 87643 3345677899998899999999999999876444 789999999999999986
No 37
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.10 E-value=5.9e-11 Score=105.51 Aligned_cols=264 Identities=24% Similarity=0.322 Sum_probs=174.6
Q ss_pred EEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEEEEEEeCCC
Q 021593 20 YTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQNK 99 (310)
Q Consensus 20 ~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l~n~~~ 99 (310)
+.|.|.||+... ..++|..|..+|..|++.+||.|+ +++.|+.+.... +|.+.+.++|.++|+..
T Consensus 6 ~~~~~~~~~~~~----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~ 70 (297)
T KOG1987|consen 6 FTWVISNFSSVG----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSP----GWERYAKLRLTVVNQKS 70 (297)
T ss_pred cceeeccCcchh----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCC----CcceeEEEEEEEccCCC
Confidence 339999999884 788999999999999999999863 789999887653 69999999999999998
Q ss_pred Cce-EEeeccccceeeccC--CCccccccceeeccccccCCCCeeecCEEEEEEEEEEeeeccCCCCceeec--------
Q 021593 100 GNF-LILQDAMGAERRFHR--LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKGECLSM-------- 168 (310)
Q Consensus 100 ~~~-~~~~~~~~~~~~F~~--~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~-------- 168 (310)
... ...+. ....|.. ....||+..+++...+.+...||+.++.+.+-+...|.+.... .+....
T Consensus 71 ~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~--~d~~~~~~~~~~~~ 145 (297)
T KOG1987|consen 71 EKYLSTVEE---GFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGK--SDVFKESSKLITLL 145 (297)
T ss_pred cceeeeeee---eEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeecc--cccchhcccccccc
Confidence 765 43311 2333333 3578999999999999988899999988888888777776632 121110
Q ss_pred ccCCCC----ceEEEEEccccccCC----CeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCC--CCCe
Q 021593 169 IKDAPS----IKHVWRIENFSKLRS----ECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT--PGSK 238 (310)
Q Consensus 169 ~~~~~~----~~~~w~i~~fs~~~~----~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~--~~w~ 238 (310)
...+.. ..|+|.+.+++.... ....+..|..++..|++.++|.+.......+++.+|......... ..-.
T Consensus 146 d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 225 (297)
T KOG1987|consen 146 EEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSAL 225 (297)
T ss_pred ccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHH
Confidence 112334 779999999988762 256667899999999999999997655555777888765522111 1111
Q ss_pred EEEEEEEEEEcCCCCc--ce-ecc-ceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEE
Q 021593 239 IYAEFTLRLLDQAQAR--HI-AGK-ADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVH 304 (310)
Q Consensus 239 ~~~~~~~~l~~~~~~~--~~-~~~-~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~ 304 (310)
+.+......+|+...+ +. .+. ...........+ ..++.++.++.....+++++|++.+++...++
T Consensus 226 ~~~~~~~~~ld~l~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 294 (297)
T KOG1987|consen 226 TYVIAAGFKLDWLEKKLNEVKEKKKKDLWYEIRLQEL-EEELKSLKDKCSDLEGLLVKDKAEVEAESEPL 294 (297)
T ss_pred HHHHhccchHhHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHhhhhhhhhHHHHHHhhhhhhhcccCCc
Confidence 2333333455554321 11 001 000111111111 44566665555444567778888877776554
No 38
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.41 E-value=3.8e-06 Score=74.62 Aligned_cols=118 Identities=29% Similarity=0.474 Sum_probs=94.4
Q ss_pred EEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCCcc-e
Q 021593 178 VWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQARH-I 256 (310)
Q Consensus 178 ~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~-~ 256 (310)
.|.+.+++... ..++|..|..++..|++.+||.|+ +++.|+.+.... +|.+.+.+.|.+.|+...+. .
T Consensus 7 ~~~~~~~~~~~-l~~ys~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~~~l~v~n~~~~~~~~ 75 (297)
T KOG1987|consen 7 TWVISNFSSVG-LVIYSNGFVKGGCKWRLSAYPKGN------YLSLTLSVSDSP----GWERYAKLRLTVVNQKSEKYLS 75 (297)
T ss_pred ceeeccCcchh-hhccccceeecCceEEEEEecCCC------EEEEEEEeccCC----CcceeEEEEEEEccCCCcceee
Confidence 37788887765 678888999999999999999986 789999876532 69999999999999987643 3
Q ss_pred ec-cceeecCCC--CCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEee
Q 021593 257 AG-KADFWFSAS--NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 306 (310)
Q Consensus 257 ~~-~~~~~f~~~--~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~ 306 (310)
.. .....|..+ ...||+..+++...+.+...||++++.+++-+.+.|.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~ 128 (297)
T KOG1987|consen 76 TVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEA 128 (297)
T ss_pred eeeeeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceee
Confidence 22 334444443 468999999999999988889999998888888877654
No 39
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.7e-06 Score=87.50 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=104.9
Q ss_pred eEEEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEcCCCCc-
Q 021593 176 KHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQAQAR- 254 (310)
Q Consensus 176 ~~~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~~~~~- 254 (310)
..+|...+...+.. ...++.|..++.+|++.+.|+++. ...+++|+.+...+.. ..|++++++.+.++|..+..
T Consensus 28 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~~~~~~ 102 (1093)
T KOG1863|consen 28 STTIDGIDDKSLLY-RALSSNFGAGATKWKILIAPKVNS---LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNTIDNLP 102 (1093)
T ss_pred cccccCcCcchhhh-HhcCccccccccceeeeeccccCc---ccceeEEeeeccCCCC-cceEecchhhhccccCCCCch
Confidence 34455555444444 677889999999999999999883 3579999999886655 45999999999999933332
Q ss_pred ceeccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEeeecC
Q 021593 255 HIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNA 309 (310)
Q Consensus 255 ~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~t~~ 309 (310)
...+...|.|.....+||+..|+.++++.++..+|+.+|++.++++|.|...++.
T Consensus 103 ~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 157 (1093)
T KOG1863|consen 103 DPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL 157 (1093)
T ss_pred hhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence 4456778999998899999999999999999999999999999999999876653
No 40
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=5.5e-06 Score=85.33 Aligned_cols=131 Identities=21% Similarity=0.259 Sum_probs=105.5
Q ss_pred ceEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEEEEEEeC
Q 021593 18 THYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFLLDQ 97 (310)
Q Consensus 18 ~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l~n~ 97 (310)
...+|.+.+...+. ....|+.|..++.+|++.+.|+++. ...+++|+.+...+.. ..|++.+++.+.+.|.
T Consensus 27 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~s~~~~~~~~v~~~ 97 (1093)
T KOG1863|consen 27 QSTTIDGIDDKSLL----YRALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSL-KSWSCGAQAVLRVKNT 97 (1093)
T ss_pred ccccccCcCcchhh----hHhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCC-cceEecchhhhccccC
Confidence 44446655555443 3677899999999999999999874 5779999999988765 4599999999999994
Q ss_pred CCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEeeeccC
Q 021593 98 NKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERST 160 (310)
Q Consensus 98 ~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~~~~ 160 (310)
.+........ ..|.|.....+||+..|+.++++.++..+|+.+|++.+++.|++..++..
T Consensus 98 ~~~~~~~~~~---~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~ 157 (1093)
T KOG1863|consen 98 IDNLPDPEKA---IHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL 157 (1093)
T ss_pred CCCchhhhhh---hhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence 3333332222 67899998899999999999999999999999999999999999877654
No 41
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.27 E-value=0.00019 Score=66.03 Aligned_cols=81 Identities=22% Similarity=0.256 Sum_probs=68.7
Q ss_pred CCceEEEEEcccccccc----cccceEEcCcEEE--cCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEEE
Q 021593 16 PPTHYTVKIQSFSLLLK----NSVEKYESGDFEA--GGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVYA 88 (310)
Q Consensus 16 ~~~~~~~~I~nfs~~~~----~~~~~~~S~~f~~--~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~~ 88 (310)
..|.++|+|.+++..+. .....++|++|.. .||+.+..+|-||.+ .+.+.++|+|+.++.++.+ ...|+..-
T Consensus 278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g-~~~~~~~s~~~~~~~ge~d~~l~wpf~~ 356 (391)
T KOG0297|consen 278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDG-TGKGTHLSLYFVVMRGEYDALLPWPFRQ 356 (391)
T ss_pred cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCC-CCCcceeeeeeeecccCcccccccCCCC
Confidence 46999999999965543 2356799999966 599999999999988 6788999999999998664 35799999
Q ss_pred EEEEEEEeC
Q 021593 89 VFRLFLLDQ 97 (310)
Q Consensus 89 ~f~~~l~n~ 97 (310)
+.+++|++|
T Consensus 357 ~v~~~l~dq 365 (391)
T KOG0297|consen 357 KVTLMLLDQ 365 (391)
T ss_pred ceEEEEecc
Confidence 999999999
No 42
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.88 E-value=0.00079 Score=61.94 Aligned_cols=78 Identities=24% Similarity=0.344 Sum_probs=66.7
Q ss_pred CCceEEEEEccccccC-------CCeeecccEE--eCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEEEE
Q 021593 173 PSIKHVWRIENFSKLR-------SECCDSQVFS--SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAE 242 (310)
Q Consensus 173 ~~~~~~w~i~~fs~~~-------~~~~~S~~f~--~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~ 242 (310)
..+...|+|.+++..+ ...++|+.|. -.||+.+..+|-+|++.+.+.++|+|+.++..+.+ ...|++.-+
T Consensus 278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wpf~~~ 357 (391)
T KOG0297|consen 278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWPFRQK 357 (391)
T ss_pred cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccccCCCCc
Confidence 4689999999996554 3578888886 47999999999999999889999999999986544 357999999
Q ss_pred EEEEEEcC
Q 021593 243 FTLRLLDQ 250 (310)
Q Consensus 243 ~~~~l~~~ 250 (310)
+++.+++|
T Consensus 358 v~~~l~dq 365 (391)
T KOG0297|consen 358 VTLMLLDQ 365 (391)
T ss_pred eEEEEecc
Confidence 99999999
Done!