Query 021593
Match_columns 310
No_of_seqs 260 out of 1936
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ivv_A Speckle-type POZ protei 100.0 6E-31 2E-35 208.0 12.8 140 10-157 3-145 (145)
2 2foj_A Ubiquitin carboxyl-term 100.0 4E-30 1.4E-34 205.6 13.6 137 172-310 16-154 (155)
3 2foj_A Ubiquitin carboxyl-term 100.0 2.6E-29 8.8E-34 200.9 14.8 136 15-158 16-151 (155)
4 3ivv_A Speckle-type POZ protei 100.0 9.9E-29 3.4E-33 195.2 9.6 132 170-306 6-145 (145)
5 4gjh_A TNF receptor-associated 99.9 4.2E-28 1.4E-32 197.9 9.0 143 14-157 20-175 (178)
6 4ghu_A TNF receptor-associated 99.9 5.6E-28 1.9E-32 199.7 7.2 142 14-158 36-190 (198)
7 4gjh_A TNF receptor-associated 99.9 8.2E-28 2.8E-32 196.2 6.9 136 171-306 20-175 (178)
8 3hqi_A Speckle-type POZ protei 99.9 4.2E-27 1.4E-31 209.3 11.8 180 14-205 3-187 (312)
9 1lb6_A TNF receptor-associated 99.9 4.3E-27 1.5E-31 188.9 10.6 141 15-157 2-158 (160)
10 1ca9_A TRAF2, protein (TNF rec 99.9 5.2E-27 1.8E-31 193.9 8.6 140 15-156 40-191 (192)
11 1d00_A Tumor necrosis factor r 99.9 8.9E-27 3E-31 188.6 9.4 139 15-155 16-166 (168)
12 2gkw_A TNF receptor-associated 99.9 4.1E-27 1.4E-31 194.2 6.7 138 16-156 38-188 (192)
13 1ca9_A TRAF2, protein (TNF rec 99.9 2.7E-27 9.2E-32 195.6 5.5 133 172-305 40-191 (192)
14 1d00_A Tumor necrosis factor r 99.9 8.3E-27 2.8E-31 188.8 6.8 132 172-304 16-166 (168)
15 4ghu_A TNF receptor-associated 99.9 7.3E-27 2.5E-31 193.0 5.0 136 171-308 36-191 (198)
16 1lb6_A TNF receptor-associated 99.9 5.2E-26 1.8E-30 182.6 9.2 132 173-306 3-158 (160)
17 2gkw_A TNF receptor-associated 99.9 2.4E-26 8.3E-31 189.5 5.4 131 173-305 38-188 (192)
18 1flk_A TNF receptor associated 99.9 5.2E-26 1.8E-30 192.4 6.8 140 15-157 73-225 (228)
19 1flk_A TNF receptor associated 99.9 1.2E-25 4.2E-30 190.1 4.9 133 173-307 74-226 (228)
20 2f1z_A Ubiquitin carboxyl-term 99.9 4.2E-24 1.4E-28 202.6 10.5 136 15-158 28-163 (522)
21 3hqi_A Speckle-type POZ protei 99.9 7.7E-24 2.6E-28 188.2 11.2 128 174-306 6-141 (312)
22 2f1z_A Ubiquitin carboxyl-term 99.9 1.3E-23 4.4E-28 199.2 10.7 135 172-308 28-164 (522)
23 4gwm_A Meprin A subunit beta; 99.5 5E-14 1.7E-18 132.9 10.7 136 11-158 399-569 (592)
24 4gwm_A Meprin A subunit beta; 99.4 1.6E-13 5.5E-18 129.4 9.1 126 171-303 402-565 (592)
25 3v0r_A Major allergen ALT A 1; 53.2 3.2 0.00011 30.5 0.3 35 10-45 4-38 (133)
26 3v0r_A Major allergen ALT A 1; 33.7 14 0.00046 27.2 1.0 29 170-198 7-37 (133)
27 1yel_A AT1G16640; CESG, protei 22.6 52 0.0018 22.8 2.5 35 271-309 67-104 (104)
No 1
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.97 E-value=6e-31 Score=208.02 Aligned_cols=140 Identities=26% Similarity=0.431 Sum_probs=119.1
Q ss_pred cccccCCCceEEEEEcccccccccccceEEcCcEEEcCe---eEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEE
Q 021593 10 RSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGY---KWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEV 86 (310)
Q Consensus 10 ~~~~~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~---~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~ 86 (310)
.++.++..++|+|+|+|||.+++..++.++|++|.+||| +|+|.+||+|+. .+..+||||||.|.+. ..|++
T Consensus 3 ~~m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~----~~w~v 77 (145)
T 3ivv_A 3 GGSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSC----PKSEV 77 (145)
T ss_dssp --CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSS-GGGTTEEEEEEEEEEC----SSSEE
T ss_pred CCCCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCC-CCCCCeEEEEEEEcCC----CCCcE
Confidence 578889999999999999998754468999999999996 999999999986 3567899999999875 35999
Q ss_pred EEEEEEEEEeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEeee
Q 021593 87 YAVFRLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE 157 (310)
Q Consensus 87 ~~~f~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~ 157 (310)
.|+|+|+|+||+++........ ..+.|.. ..+|||.+||++++|+++.++||+||+|+|+|+|+|+++
T Consensus 78 ~a~f~l~llnq~~~~~~~~~~~--~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 78 RAKFKFSILNAKGEETKAMESQ--RAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEEEEEEEECTTSCEEEEEECS--SCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEEEEEEEecCCCceeeeccc--ceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 9999999999998876543332 5678875 578999999999999876899999999999999999863
No 2
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.97 E-value=4e-30 Score=205.58 Aligned_cols=137 Identities=14% Similarity=0.245 Sum_probs=117.0
Q ss_pred CCCceEEEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCC-CCCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEcC
Q 021593 172 APSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRH-GTGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQ 250 (310)
Q Consensus 172 ~~~~~~~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~-~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~ 250 (310)
.+.+.|+|+|+|||.++ +.++|+.|.++|++|+|++||+|+.. +.++||||||+|... ..+..|++.|+|+|+|+||
T Consensus 16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l~~~ 93 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY 93 (155)
T ss_dssp CSEEEEEEEESSGGGCC-SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEECCS
T ss_pred CCCcEEEEEECChhhcC-CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEEEcC
Confidence 45689999999999995 78999999999999999999999765 356899999999654 4456799999999999999
Q ss_pred CCCc-ceeccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEeeecCC
Q 021593 251 AQAR-HIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISNAL 310 (310)
Q Consensus 251 ~~~~-~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~t~~~ 310 (310)
+++. +..+...+.|.....+|||.+||++++|++++++||+||+|+|+|+|+|.++++.+
T Consensus 94 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~~ 154 (155)
T 2foj_A 94 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVA 154 (155)
T ss_dssp SCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSSC
T ss_pred CCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCccccc
Confidence 8765 55566778898767889999999999998777899999999999999999998854
No 3
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.96 E-value=2.6e-29 Score=200.90 Aligned_cols=136 Identities=18% Similarity=0.334 Sum_probs=113.3
Q ss_pred CCCceEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEEEEE
Q 021593 15 APPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFL 94 (310)
Q Consensus 15 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l 94 (310)
...|+|+|+|+|||.++ +.++|++|.+||++|+|.+||+|+...+..+||||||.|... ..+.+|++.|+|+|+|
T Consensus 16 ~~~~~~~w~I~nfS~~~----~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~l~l 90 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKI 90 (155)
T ss_dssp CSEEEEEEEESSGGGCC----SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEEEEE
T ss_pred CCCcEEEEEECChhhcC----CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEEEEE
Confidence 55799999999999994 689999999999999999999997521357899999999654 3456799999999999
Q ss_pred EeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEeeec
Q 021593 95 LDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER 158 (310)
Q Consensus 95 ~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~~ 158 (310)
+||+++.....+. ..+.|.....+|||.+||++++|+++.++||+||+|+|+|+|+|.+++
T Consensus 91 ~~~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~t 151 (155)
T 2foj_A 91 INYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 151 (155)
T ss_dssp CCSSCGGGCEEEE---EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCB
T ss_pred EcCCCCcceEEec---cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcc
Confidence 9998875333333 568888766789999999999999888999999999999999996655
No 4
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.95 E-value=9.9e-29 Score=195.23 Aligned_cols=132 Identities=27% Similarity=0.467 Sum_probs=112.3
Q ss_pred cCCCCceEEEEEccccccC---CCeeecccEEeCCe---EEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEE
Q 021593 170 KDAPSIKHVWRIENFSKLR---SECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEF 243 (310)
Q Consensus 170 ~~~~~~~~~w~i~~fs~~~---~~~~~S~~f~~~g~---~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~ 243 (310)
.....+.|+|+|.|||.++ ++.+.|+.|.++|+ +|+|++||+|+..+..+|||+||+|.+. +.|++.|+|
T Consensus 6 ~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~~~~~lSlyL~l~~~----~~w~v~a~f 81 (145)
T 3ivv_A 6 GKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKF 81 (145)
T ss_dssp CCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGGGTTEEEEEEEEEEC----SSSEEEEEE
T ss_pred CcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCCCCCeEEEEEEEcCC----CCCcEEEEE
Confidence 3456789999999999986 46899999999995 9999999999876667899999999874 369999999
Q ss_pred EEEEEcCCCCcce--eccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEee
Q 021593 244 TLRLLDQAQARHI--AGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 306 (310)
Q Consensus 244 ~~~l~~~~~~~~~--~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~ 306 (310)
+|+|+||.+++.. .....++|.. ..+|||++||++++|++++++||+||+|+|+|+|+|+++
T Consensus 82 ~l~llnq~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 82 KFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEEEECTTSCEEEEEECSSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEEEecCCCceeeecccceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 9999999887643 2345678864 678999999999999765689999999999999999864
No 5
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.95 E-value=4.2e-28 Score=197.88 Aligned_cols=143 Identities=18% Similarity=0.275 Sum_probs=114.6
Q ss_pred cCCCceEEEEEcccccccc---cc-cceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCcEE
Q 021593 14 EAPPTHYTVKIQSFSLLLK---NS-VEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS-LQHGWEV 86 (310)
Q Consensus 14 ~~~~~~~~~~I~nfs~~~~---~~-~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~-~~~~w~~ 86 (310)
.+..|+|+|+|.|||.+++ .+ +..++|++|.+| ||+|+|.+||+|++ .+.++||||||.|.+++. ....|++
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~d~~l~W~v 98 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPF 98 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEBCCTTGGGSCSSC
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCC-CCCCCEEEEEEEEecCCCCcccCCce
Confidence 4678999999999999975 22 348999999999 99999999999987 456789999999987643 2357999
Q ss_pred EEEEEEEEEeCCCCceEEeec--cccceeeccC----CCccccccceeeccccccCCCCeeecCEEEEEEEEEEeee
Q 021593 87 YAVFRLFLLDQNKGNFLILQD--AMGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE 157 (310)
Q Consensus 87 ~~~f~~~l~n~~~~~~~~~~~--~~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~ 157 (310)
.++|+|+|+||+++....... +....+.|+. ...+|||.+||++++|+++.++||+||+|+|+|+|.|.+.
T Consensus 99 ~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 99 RQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp CCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred EEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence 999999999998765433211 0002357763 3468999999999999977799999999999999977543
No 6
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.94 E-value=5.6e-28 Score=199.74 Aligned_cols=142 Identities=16% Similarity=0.188 Sum_probs=113.6
Q ss_pred cCCCceEEEEEcccccccc---c-ccceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEE
Q 021593 14 EAPPTHYTVKIQSFSLLLK---N-SVEKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEV 86 (310)
Q Consensus 14 ~~~~~~~~~~I~nfs~~~~---~-~~~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~ 86 (310)
.+..|+|+|+|.|||.+++ . .++.++|++|.+| ||+|+|.+||||++ .+.++||||||.+.+++.+ ...|++
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~-~~~~~~lSlyL~l~~g~~D~~l~wp~ 114 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPF 114 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSC
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCC-CCCCCeEEEEEEecCCccCCCCCceE
Confidence 3567999999999999975 2 2578999999999 99999999999987 4567899999999976542 347999
Q ss_pred EEEEEEEEEeCCCCceEEeec----c--ccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEeeec
Q 021593 87 YAVFRLFLLDQNKGNFLILQD----A--MGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER 158 (310)
Q Consensus 87 ~~~f~~~l~n~~~~~~~~~~~----~--~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~~ 158 (310)
.++|+|+|+||.+........ . ....+.|.....+|||.+||++++|+ ++|||+||+|+|+|+|.|+..+
T Consensus 115 ~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~ 190 (198)
T 4ghu_A 115 KQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP 190 (198)
T ss_dssp CCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTCC
T ss_pred EEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccCC
Confidence 999999999998764433211 0 00112233345689999999999999 6899999999999999998766
No 7
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.94 E-value=8.2e-28 Score=196.16 Aligned_cols=136 Identities=24% Similarity=0.350 Sum_probs=112.8
Q ss_pred CCCCceEEEEEccccccCC-------CeeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCCC-CCCCCeEE
Q 021593 171 DAPSIKHVWRIENFSKLRS-------ECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTT-LTPGSKIY 240 (310)
Q Consensus 171 ~~~~~~~~w~i~~fs~~~~-------~~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~-~~~~w~~~ 240 (310)
....+.|+|+|.|||.+++ ..+.|+.|.++ |++|+|.+||+|++.+.++|||+||+|.+... ....|++.
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~W~v~ 99 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR 99 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSCSSCC
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCCCCCEEEEEEEEecCCCCcccCCceE
Confidence 4567999999999998863 27999999999 99999999999987766789999999977543 23579999
Q ss_pred EEEEEEEEcCCCCc-ceecc-----ceeecCC----CCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEee
Q 021593 241 AEFTLRLLDQAQAR-HIAGK-----ADFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 306 (310)
Q Consensus 241 ~~~~~~l~~~~~~~-~~~~~-----~~~~f~~----~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~ 306 (310)
++|+|+|+||.++. +.... ..+.|+. .+.+|||.+||++++|+++.++||+||+|+|+|+|+|.+.
T Consensus 100 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~~ 175 (178)
T 4gjh_A 100 QRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDL 175 (178)
T ss_dssp CEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTTC
T ss_pred EEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecCC
Confidence 99999999998754 33221 3467763 3568999999999999987789999999999999987654
No 8
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.94 E-value=4.2e-27 Score=209.30 Aligned_cols=180 Identities=24% Similarity=0.374 Sum_probs=132.0
Q ss_pred cCCCceEEEEEcccccccccccceEEcCcEEEcCe---eEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEE
Q 021593 14 EAPPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGY---KWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVF 90 (310)
Q Consensus 14 ~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~---~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f 90 (310)
++..|+|+|+|.|||.++...++.++|++|.+||+ +|+|.+||||.+ .++++|||+||.|.+.. .|++.++|
T Consensus 3 ~~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~-~~~~~~lslyL~~~~~~----~~~v~a~~ 77 (312)
T 3hqi_A 3 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCP----KSEVRAKF 77 (312)
T ss_dssp EEEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECC----C-CEEEEE
T ss_pred ceEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCC-ccCCCcEEEEEEEcCCC----CCcEEEEE
Confidence 45679999999999999744478999999999995 999999999986 45789999999998653 58999999
Q ss_pred EEEEEeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEeeeccCCCC-ceeecc
Q 021593 91 RLFLLDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKERSTGKG-ECLSMI 169 (310)
Q Consensus 91 ~~~l~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~-~~~~~~ 169 (310)
+|+|+||+++.....+.. ..+.|... .+|||.+||++++|+++.+|||+||+++|+|+|+|++......+ +....+
T Consensus 78 ~~~l~~~~~~~~~~~~~~--~~~~F~~~-~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~ 154 (312)
T 3hqi_A 78 KFSILNAKGEETKAMESQ--RAYRFVQG-KDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMV 154 (312)
T ss_dssp EEEEECTTSCEEEEEECS--SCEEECTT-CEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSC
T ss_pred EEEEEeCCCCcccccccC--CceeCCCC-CCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEecccccccccccccc
Confidence 999999998776554322 56788864 58999999999999877789999999999999999976421111 112233
Q ss_pred cCCCCceEEEEEccccccC-CCeeecccEEeCCeEEE
Q 021593 170 KDAPSIKHVWRIENFSKLR-SECCDSQVFSSGDQKWQ 205 (310)
Q Consensus 170 ~~~~~~~~~w~i~~fs~~~-~~~~~S~~f~~~g~~w~ 205 (310)
..|+... ..++..+. .....+..+.++|..++
T Consensus 155 ~~p~~~l----~~~l~~l~~~~~~~Dv~l~v~~~~f~ 187 (312)
T 3hqi_A 155 KVPECRL----ADELGGLWENSRFTDCCLCVAGQEFQ 187 (312)
T ss_dssp CCCCCCH----HHHHHHHHHTTCSCCEEEEETTEEEE
T ss_pred CCCCchH----HHHHHHHHhCCCCCceEEEECCEEEe
Confidence 3444332 24455544 33344457778876543
No 9
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.94 E-value=4.3e-27 Score=188.90 Aligned_cols=141 Identities=23% Similarity=0.297 Sum_probs=107.2
Q ss_pred CCCceEEEEEcccccccc-c-ccc--eEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEE
Q 021593 15 APPTHYTVKIQSFSLLLK-N-SVE--KYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVY 87 (310)
Q Consensus 15 ~~~~~~~~~I~nfs~~~~-~-~~~--~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~ 87 (310)
...|+|+|+|+|||.+++ . .++ .++|++|.+| ||+|+|.+||||++....++||||||.+++++.. ..+|++.
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 457999999999999975 2 355 8999999999 9999999999997622247899999999876542 3569999
Q ss_pred EEEEEEEEeCCCCceE--Eeec--cccceeeccC-----CCccccccceeeccccccCCCCeeecCEEEEEEEEEEeee
Q 021593 88 AVFRLFLLDQNKGNFL--ILQD--AMGAERRFHR-----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE 157 (310)
Q Consensus 88 ~~f~~~l~n~~~~~~~--~~~~--~~~~~~~F~~-----~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~ 157 (310)
++|+|+|+||.+.... .... .......|.. ...+|||.+||++++|+ .++||+||+|+|+|+|.|+.+
T Consensus 82 a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 82 GTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC---
T ss_pred eeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeec
Confidence 9999999999875211 0000 0001234543 12379999999999999 689999999999999999864
No 10
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.94 E-value=5.2e-27 Score=193.89 Aligned_cols=140 Identities=21% Similarity=0.282 Sum_probs=111.2
Q ss_pred CCCceEEEEEcccccccc-c-ccc--eEEcCcEEE--cCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCcEEE
Q 021593 15 APPTHYTVKIQSFSLLLK-N-SVE--KYESGDFEA--GGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQ-HGWEVY 87 (310)
Q Consensus 15 ~~~~~~~~~I~nfs~~~~-~-~~~--~~~S~~f~~--~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~-~~w~~~ 87 (310)
...|+|+|+|.|||.+++ . .++ .++|++|.+ |||+|+|.+||+|++ .+.++||||||.+.+++..+ .+|++.
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~W~~~ 118 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN 118 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEccCCCCCcCCCceE
Confidence 578999999999999975 2 244 699999999 999999999999986 45678999999998875443 689999
Q ss_pred EEEEEEEEeCCCCceEEeecc-ccceeeccC----CCccccccceeeccccccCCCCeeecCEEEEEEEEEEee
Q 021593 88 AVFRLFLLDQNKGNFLILQDA-MGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK 156 (310)
Q Consensus 88 ~~f~~~l~n~~~~~~~~~~~~-~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~ 156 (310)
++|+|+|+||+++........ ......|.. ...+|||.+||++++|++ .++||+||+|+|+|+|+|.+
T Consensus 119 a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 119 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 999999999998744321100 001234642 346899999999999986 57999999999999998753
No 11
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.94 E-value=8.9e-27 Score=188.63 Aligned_cols=139 Identities=22% Similarity=0.287 Sum_probs=109.3
Q ss_pred CCCceEEEEEccccccccc--ccc--eEEcCcEE--EcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCC-CCcEEE
Q 021593 15 APPTHYTVKIQSFSLLLKN--SVE--KYESGDFE--AGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQ-HGWEVY 87 (310)
Q Consensus 15 ~~~~~~~~~I~nfs~~~~~--~~~--~~~S~~f~--~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~-~~w~~~ 87 (310)
...|+|+|+|+|||.+++. .++ .++|++|. +|||+|+|.+||||++ .+.++||||||.|.+++..+ .+|++.
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~-~~~~~~lSlyL~l~~~~~~~~~~w~~~ 94 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN 94 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCC-CCCCcEEEEEEEEecCCCCccCCCceE
Confidence 4689999999999999752 344 49999996 7899999999999986 45679999999998865433 689999
Q ss_pred EEEEEEEEeCCCCceEEeec-cccceeeccC----CCccccccceeeccccccCCCCeeecCEEEEEEEEEEe
Q 021593 88 AVFRLFLLDQNKGNFLILQD-AMGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVS 155 (310)
Q Consensus 88 ~~f~~~l~n~~~~~~~~~~~-~~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~ 155 (310)
++|+|+|+||++........ .......|.. ...+|||.+||++++|+++ ++||+||+|+|+|+|+|.
T Consensus 95 ~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 95 QKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp CCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred EEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence 99999999999865332210 0001235653 3467999999999999943 399999999999999774
No 12
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.93 E-value=4.1e-27 Score=194.20 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=110.6
Q ss_pred CCceEEEEEcccccccc-c-ccc--eEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEEE
Q 021593 16 PPTHYTVKIQSFSLLLK-N-SVE--KYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVYA 88 (310)
Q Consensus 16 ~~~~~~~~I~nfs~~~~-~-~~~--~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~~ 88 (310)
..|+|+|+|.|||.+++ . .++ .++|++|.+| ||+|+|.+||||++ .+.++|||+||.+++++.+ ...|++.+
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~wp~~a 116 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFKQ 116 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCG-GGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCC-CCCCCEEEEEEEEecCCCCccCCCcEEE
Confidence 67999999999999974 2 244 5999999999 99999999999986 4568999999999876543 35799999
Q ss_pred EEEEEEEeCCCCceEEeecc--ccceeeccCC----CccccccceeeccccccCCCCeeecCEEEEEEEEEEee
Q 021593 89 VFRLFLLDQNKGNFLILQDA--MGAERRFHRL----KREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSK 156 (310)
Q Consensus 89 ~f~~~l~n~~~~~~~~~~~~--~~~~~~F~~~----~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~ 156 (310)
+|+|+|+||.+......... ....+.|... ..+|||.+||++++|+ ++|||+||+|+|+|+|.|.+
T Consensus 117 ~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~--~~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 117 KVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp CEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhC--cCCCeeCCEEEEEEEEEcCC
Confidence 99999999998754332110 0022557542 4679999999999999 57999999999999997754
No 13
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.93 E-value=2.7e-27 Score=195.61 Aligned_cols=133 Identities=23% Similarity=0.354 Sum_probs=109.5
Q ss_pred CCCceEEEEEccccccCC-----C--eeecccEEe--CCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCC-CCCeEEE
Q 021593 172 APSIKHVWRIENFSKLRS-----E--CCDSQVFSS--GDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYA 241 (310)
Q Consensus 172 ~~~~~~~w~i~~fs~~~~-----~--~~~S~~f~~--~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~ 241 (310)
+..+.|+|+|.|||.++. + .++|+.|.+ +|++|+|.+||+|++.+.++|||+||++.+...++ ..|++.+
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~W~~~a 119 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 119 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCCCceEE
Confidence 567999999999999862 2 599999999 99999999999998766678999999998765443 5799999
Q ss_pred EEEEEEEcCCCCcceeccc-----eeecCC----CCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEe
Q 021593 242 EFTLRLLDQAQARHIAGKA-----DFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG 305 (310)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~-----~~~f~~----~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~ 305 (310)
+|+|+|+||.++++..... ...|.. .+.+|||++||++++|++ .+|||+||+|+|+|+|+|.+
T Consensus 120 ~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 120 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred EEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 9999999998875442221 234642 356899999999999984 37999999999999998853
No 14
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.93 E-value=8.3e-27 Score=188.79 Aligned_cols=132 Identities=22% Similarity=0.337 Sum_probs=108.2
Q ss_pred CCCceEEEEEccccccCC-----C--eeecccEE--eCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCCC-CCCeEEE
Q 021593 172 APSIKHVWRIENFSKLRS-----E--CCDSQVFS--SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTLT-PGSKIYA 241 (310)
Q Consensus 172 ~~~~~~~w~i~~fs~~~~-----~--~~~S~~f~--~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~-~~w~~~~ 241 (310)
...+.|+|+|.|||.+++ + .++|+.|. ++|++|+|++||+|++.+.++|||+||+|.+...++ .+|++.+
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~w~~~~ 95 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQ 95 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCC
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCCCCcEEEEEEEEecCCCCccCCCceEE
Confidence 357899999999999862 2 38999996 889999999999998766678999999998765443 5799999
Q ss_pred EEEEEEEcCCCCcceeccc-----eeecCC----CCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEE
Q 021593 242 EFTLRLLDQAQARHIAGKA-----DFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVH 304 (310)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~~-----~~~f~~----~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~ 304 (310)
+|+|+|+||.++++..... .+.|.. .+.+|||.+||++++|+++ +|||+||+|+|+|+|+|.
T Consensus 96 ~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 96 KVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp CEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred EEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence 9999999998865443221 235653 3578999999999999973 399999999999999874
No 15
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.93 E-value=7.3e-27 Score=193.03 Aligned_cols=136 Identities=21% Similarity=0.310 Sum_probs=110.4
Q ss_pred CCCCceEEEEEccccccCC-------CeeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEE
Q 021593 171 DAPSIKHVWRIENFSKLRS-------ECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIY 240 (310)
Q Consensus 171 ~~~~~~~~w~i~~fs~~~~-------~~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~ 240 (310)
....+.|+|+|.|||.+++ +.++|+.|.++ |++|+|.+||+|++.+.++|||+||.+.+++.+ ...|++.
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~wp~~ 115 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFK 115 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCCCCCeEEEEEEecCCccCCCCCceEE
Confidence 3457999999999998863 58999999999 999999999999887667899999999875432 3479999
Q ss_pred EEEEEEEEcCCCCc-ceecc---------ceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEeeec
Q 021593 241 AEFTLRLLDQAQAR-HIAGK---------ADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN 308 (310)
Q Consensus 241 ~~~~~~l~~~~~~~-~~~~~---------~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~t~ 308 (310)
++|+|.|+||.++. ++... ..+.|...+.+|||.+||++++|++ +|||+||+|+|+|+|+|+...+
T Consensus 116 a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~~ 191 (198)
T 4ghu_A 116 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 191 (198)
T ss_dssp CCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEECCTTCC-
T ss_pred EEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEEeccCCC
Confidence 99999999998643 33211 1222334567899999999999996 7999999999999999876543
No 16
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.93 E-value=5.2e-26 Score=182.56 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=103.2
Q ss_pred CCceEEEEEccccccCC-----C--eeecccEEeC--CeEEEEEEeeCCCCCC-CCcEEEEEEEecCCCCC-CCCCeEEE
Q 021593 173 PSIKHVWRIENFSKLRS-----E--CCDSQVFSSG--DQKWQIQLYPKGRRHG-TGTHLAVYLALADSTTL-TPGSKIYA 241 (310)
Q Consensus 173 ~~~~~~w~i~~fs~~~~-----~--~~~S~~f~~~--g~~w~i~~yp~g~~~~-~~~~ls~~L~~~~~~~~-~~~w~~~~ 241 (310)
..+.|+|+|.|||.++. + .+.|+.|.++ |++|+|++||+|++.+ .++|||+||++.+.+.+ ...|++.+
T Consensus 3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a 82 (160)
T 1lb6_A 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQG 82 (160)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCCS
T ss_pred cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCceee
Confidence 35789999999999862 3 7999999999 9999999999998654 36899999999875443 34699999
Q ss_pred EEEEEEEcCCCCc---ceecc-----ceeecCCC-----CCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEee
Q 021593 242 EFTLRLLDQAQAR---HIAGK-----ADFWFSAS-----NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 306 (310)
Q Consensus 242 ~~~~~l~~~~~~~---~~~~~-----~~~~f~~~-----~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~ 306 (310)
+|+|+|+||.++. +.... ....|... ..+|||++||++++|++ ++||+||+|+|+|+|+|+.+
T Consensus 83 ~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 83 TIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp EEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEEEEC---
T ss_pred eEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEEEEEeec
Confidence 9999999997642 11111 11235431 23799999999999996 79999999999999999864
No 17
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.92 E-value=2.4e-26 Score=189.53 Aligned_cols=131 Identities=22% Similarity=0.354 Sum_probs=108.2
Q ss_pred CCceEEEEEccccccC-----CC--eeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEEEE
Q 021593 173 PSIKHVWRIENFSKLR-----SE--CCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAE 242 (310)
Q Consensus 173 ~~~~~~w~i~~fs~~~-----~~--~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~ 242 (310)
..+.|+|+|.|||.++ ++ .++|++|.++ |++|+|.+||+|++.+.++|+|+||++.+.+.+ ...|++.++
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~wp~~a~ 117 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 117 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGGTTTEEEEEEEEECCTTGGGSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCCCCCEEEEEEEEecCCCCccCCCcEEEE
Confidence 5789999999999986 23 5999999999 999999999999876667899999999875543 347999999
Q ss_pred EEEEEEcCCCCc-ceecc-----ceeecCCC----CCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEe
Q 021593 243 FTLRLLDQAQAR-HIAGK-----ADFWFSAS----NPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHG 305 (310)
Q Consensus 243 ~~~~l~~~~~~~-~~~~~-----~~~~f~~~----~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~ 305 (310)
|+|+|+||.+++ ++... ..+.|... +.+|||++||++++|++ +|||+||+|+|+|+|+|.+
T Consensus 118 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 118 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp EEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCTT
T ss_pred EEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcCC
Confidence 999999998763 33221 12557542 46899999999999986 6999999999999998754
No 18
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.92 E-value=5.2e-26 Score=192.40 Aligned_cols=140 Identities=17% Similarity=0.200 Sum_probs=111.7
Q ss_pred CCCceEEEEEcccccccc-c-cc--ceEEcCcEEEc--CeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCC-CCCcEEE
Q 021593 15 APPTHYTVKIQSFSLLLK-N-SV--EKYESGDFEAG--GYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSL-QHGWEVY 87 (310)
Q Consensus 15 ~~~~~~~~~I~nfs~~~~-~-~~--~~~~S~~f~~~--g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~-~~~w~~~ 87 (310)
...|+|+|+|.|||.++. . .+ ..++|++|.+| ||+|+|.+||||++ .+.++|+||||.+++++.. ...|++.
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~lSlyL~l~~~~~d~~l~Wp~~ 151 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK 151 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCG-GGTTTEEEEEECCBCCTTTTSSCSSCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCC-CCCCCEEEEEEEEecCCccccCCCcEE
Confidence 468999999999999875 2 23 38999999999 99999999999987 4668999999999876543 3579999
Q ss_pred EEEEEEEEeCCCCceEEeecc--ccceeeccC----CCccccccceeeccccccCCCCeeecCEEEEEEEEEEeee
Q 021593 88 AVFRLFLLDQNKGNFLILQDA--MGAERRFHR----LKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKE 157 (310)
Q Consensus 88 ~~f~~~l~n~~~~~~~~~~~~--~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~ 157 (310)
++|+|+|+||.+......... -...+.|.. ...+|||.+||++++|+ ++|||+||+|+|+|+|.|.+.
T Consensus 152 a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~ 225 (228)
T 1flk_A 152 QKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDL 225 (228)
T ss_dssp CCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHS--SSTTCCSSEEEEEEECCCTTS
T ss_pred EEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHc--cCCCccCCEEEEEEEEEcccc
Confidence 999999999998764322110 002235652 34679999999999999 589999999999999987653
No 19
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.91 E-value=1.2e-25 Score=190.12 Aligned_cols=133 Identities=22% Similarity=0.341 Sum_probs=109.6
Q ss_pred CCceEEEEEccccccCC-------CeeecccEEeC--CeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeEEEE
Q 021593 173 PSIKHVWRIENFSKLRS-------ECCDSQVFSSG--DQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKIYAE 242 (310)
Q Consensus 173 ~~~~~~w~i~~fs~~~~-------~~~~S~~f~~~--g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~~~~ 242 (310)
..+.|+|+|.|||.++. ..++|++|.++ |++|+|.+||+|++.+.++|+|+||++.+++.+ ...|++.++
T Consensus 74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~Wp~~a~ 153 (228)
T 1flk_A 74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQK 153 (228)
T ss_dssp SSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGGGTTTEEEEEECCBCCTTTTSSCSSCCCC
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCCCCCCEEEEEEEEecCCccccCCCcEEEE
Confidence 57899999999999862 27999999999 999999999999877677899999999875543 347999999
Q ss_pred EEEEEEcCCCCc-ceec-----cceeecCC----CCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEeee
Q 021593 243 FTLRLLDQAQAR-HIAG-----KADFWFSA----SNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGIS 307 (310)
Q Consensus 243 ~~~~l~~~~~~~-~~~~-----~~~~~f~~----~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~t 307 (310)
|+|+|+||.+++ +... ...+.|.. .+.+|||++||++++|++ +|||+||+|+|+|+|+|.+..
T Consensus 154 ~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v~~~~ 226 (228)
T 1flk_A 154 VTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 226 (228)
T ss_dssp EEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCCTTSC
T ss_pred EEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEccccc
Confidence 999999998764 3322 12234642 356899999999999997 799999999999999886543
No 20
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.90 E-value=4.2e-24 Score=202.57 Aligned_cols=136 Identities=18% Similarity=0.334 Sum_probs=111.9
Q ss_pred CCCceEEEEEcccccccccccceEEcCcEEEcCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCCCCCCcEEEEEEEEEE
Q 021593 15 APPTHYTVKIQSFSLLLKNSVEKYESGDFEAGGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSSLQHGWEVYAVFRLFL 94 (310)
Q Consensus 15 ~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~~~~~w~~~~~f~~~l 94 (310)
...++|+|+|+|||.++ +.++|++|.+||++|+|.+||+|+...++.+||||||.|.+. ..+.+|.+.|+|+|.|
T Consensus 28 ~~~~~~~w~I~nfS~~~----~~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l 102 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKI 102 (522)
T ss_dssp CSEEEEEEEESSCTTCC----SCEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEE
T ss_pred cCCcEEEEEECChhhcC----CceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEE
Confidence 55799999999999986 389999999999999999999997522367899999999876 3467899999999999
Q ss_pred EeCCCCceEEeeccccceeeccCCCccccccceeeccccccCCCCeeecCEEEEEEEEEEeeec
Q 021593 95 LDQNKGNFLILQDAMGAERRFHRLKREWGFDEFIPIKAFNDASNGFLLEDTCVFGAEVFVSKER 158 (310)
Q Consensus 95 ~n~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~dD~l~i~~~v~v~~~~ 158 (310)
+|+.++.....+. ..+.|.....+|||.+||++++|.++.+|||+||+++|+|+|+|..+.
T Consensus 103 ~n~~~~~~~~~~~---~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~ 163 (522)
T 2f1z_A 103 INYRDDEKSFSRR---ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 163 (522)
T ss_dssp CCTTCGGGCEEEE---CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCB
T ss_pred EcCCCCccceecc---ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccc
Confidence 9998765544333 568888767889999999999998778999999999999999996544
No 21
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.90 E-value=7.7e-24 Score=188.18 Aligned_cols=128 Identities=28% Similarity=0.491 Sum_probs=106.4
Q ss_pred CceEEEEEccccccC---CCeeecccEEeCCe---EEEEEEeeCCCCCCCCcEEEEEEEecCCCCCCCCCeEEEEEEEEE
Q 021593 174 SIKHVWRIENFSKLR---SECCDSQVFSSGDQ---KWQIQLYPKGRRHGTGTHLAVYLALADSTTLTPGSKIYAEFTLRL 247 (310)
Q Consensus 174 ~~~~~w~i~~fs~~~---~~~~~S~~f~~~g~---~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l 247 (310)
.+.|+|+|.|||.++ ++.+.|+.|.+||+ +|+|.+||+|++.+.++|+|+||+|... +.|++.++|+|+|
T Consensus 6 ~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~----~~~~v~a~~~~~l 81 (312)
T 3hqi_A 6 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----PKSEVRAKFKFSI 81 (312)
T ss_dssp EEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEEC----CC-CEEEEEEEEE
T ss_pred EEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCC----CCCcEEEEEEEEE
Confidence 468999999999986 67899999999985 9999999999877667899999999864 2589999999999
Q ss_pred EcCCCCccee--ccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEee
Q 021593 248 LDQAQARHIA--GKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGI 306 (310)
Q Consensus 248 ~~~~~~~~~~--~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~ 306 (310)
+||+++.... ....+.|.. ..+|||.+||+|++|+++.+|||+||+|+|+|+|+|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~ 141 (312)
T 3hqi_A 82 LNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 141 (312)
T ss_dssp ECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred EeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence 9998865432 245678875 468999999999999876679999999999999999964
No 22
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=199.20 Aligned_cols=135 Identities=13% Similarity=0.245 Sum_probs=112.3
Q ss_pred CCCceEEEEEccccccCCCeeecccEEeCCeEEEEEEeeCCCCCC-CCcEEEEEEEecCCCCCCCCCeEEEEEEEEEEcC
Q 021593 172 APSIKHVWRIENFSKLRSECCDSQVFSSGDQKWQIQLYPKGRRHG-TGTHLAVYLALADSTTLTPGSKIYAEFTLRLLDQ 250 (310)
Q Consensus 172 ~~~~~~~w~i~~fs~~~~~~~~S~~f~~~g~~w~i~~yp~g~~~~-~~~~ls~~L~~~~~~~~~~~w~~~~~~~~~l~~~ 250 (310)
...+.|+|+|.|||.+++ .++|++|.+||++|+|.+||+|+..+ .++|||+||+|.+. ..+.+|.+.|+|+|.|+|+
T Consensus 28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~f~l~l~n~ 105 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAVLKIINY 105 (522)
T ss_dssp CSEEEEEEEESSCTTCCS-CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTT-CCCSSCBEEEEEEEEECCT
T ss_pred cCCcEEEEEECChhhcCC-ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCC-CCCCCceEEEEEEEEEEcC
Confidence 456899999999999875 89999999999999999999997543 56799999999876 4566899999999999999
Q ss_pred CCCc-ceeccceeecCCCCCCCChhcccCccccCCCCCCeeeCCEEEEEEEEEEEeeec
Q 021593 251 AQAR-HIAGKADFWFSASNPESGWARYVSFTYFNKPGNGCLVKDVCLVEAEVTVHGISN 308 (310)
Q Consensus 251 ~~~~-~~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~~~~l~dD~l~i~~~v~i~~~t~ 308 (310)
.++. +..+...++|.....+|||.+||++++|.++.+|||+||+++|+|+|+|...++
T Consensus 106 ~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g 164 (522)
T 2f1z_A 106 RDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG 164 (522)
T ss_dssp TCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBS
T ss_pred CCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccccc
Confidence 8764 455567788987778899999999999977668999999999999999975543
No 23
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.51 E-value=5e-14 Score=132.90 Aligned_cols=136 Identities=20% Similarity=0.266 Sum_probs=107.5
Q ss_pred ccccCCCceEEEEEcccccccccccceEEcCcEEE-cCeeEEEEEEeCCCcCCCCCCeEEEEEEecCCCC-CCCCcEE-E
Q 021593 11 SVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEA-GGYKWKLVLYPAGNKSKNVKEHISVYLAMENTSS-LQHGWEV-Y 87 (310)
Q Consensus 11 ~~~~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~-~g~~W~l~~~p~g~~~~~~~~~lSl~L~~~~~~~-~~~~w~~-~ 87 (310)
++++..+..+.|+|.||++++...+..++||+|+. .||+++|.++|++ ..|+|||++|+.++. ...+|++ .
T Consensus 399 s~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~ 472 (592)
T 4gwm_A 399 NLSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPW 472 (592)
T ss_dssp EEESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCS
T ss_pred EEeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCC
Confidence 35677888999999999999875567899999976 5999999999875 468999999999755 3468999 5
Q ss_pred EEEEEEEEeCCCCceEEeeccccceee---------------cc------------C-----CCccccccceeecccccc
Q 021593 88 AVFRLFLLDQNKGNFLILQDAMGAERR---------------FH------------R-----LKREWGFDEFIPIKAFND 135 (310)
Q Consensus 88 ~~f~~~l~n~~~~~~~~~~~~~~~~~~---------------F~------------~-----~~~~~G~~~fi~~~~l~~ 135 (310)
-+++|+|+||++....... .... |. . .+.+|||..||++++|.
T Consensus 473 ~q~t~~llDQ~pd~~~rms----~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~- 547 (592)
T 4gwm_A 473 QQATMTLLDQNPDIRQRMS----NQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK- 547 (592)
T ss_dssp EEEEEEECCCCSSGGGCCC----EEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT-
T ss_pred CEEEEEEeCCCCChHhcCc----eeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh-
Confidence 7899999999866553221 1111 21 1 12458999999999999
Q ss_pred CCCCeeecCEEEEEEEEEEeeec
Q 021593 136 ASNGFLLEDTCVFGAEVFVSKER 158 (310)
Q Consensus 136 ~~~~yl~dD~l~i~~~v~v~~~~ 158 (310)
..+||+||.++|.++|..+...
T Consensus 548 -~r~fiK~d~~~i~~~~eD~~~l 569 (592)
T 4gwm_A 548 -SRDFIKGDDVYILLTVEDISHL 569 (592)
T ss_dssp -STTSSBTTBEEEEEEEEECGGG
T ss_pred -hcCcccCCeEEEEEEEEeCccc
Confidence 7789999999999999777655
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.44 E-value=1.6e-13 Score=129.41 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=97.4
Q ss_pred CCCCceEEEEEccccccC---CCeeecccEE-eCCeEEEEEEeeCCCCCCCCcEEEEEEEecCCCCC-CCCCeE-EEEEE
Q 021593 171 DAPSIKHVWRIENFSKLR---SECCDSQVFS-SGDQKWQIQLYPKGRRHGTGTHLAVYLALADSTTL-TPGSKI-YAEFT 244 (310)
Q Consensus 171 ~~~~~~~~w~i~~fs~~~---~~~~~S~~f~-~~g~~w~i~~yp~g~~~~~~~~ls~~L~~~~~~~~-~~~w~~-~~~~~ 244 (310)
.-++..+.|+|.||+++. +..++||.|. ..||+++|.+||++. .|+|+|++|.+++++ ...|++ .-+++
T Consensus 402 ~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~~-----~~~~~~~~l~sG~~D~~L~WP~~~~q~t 476 (592)
T 4gwm_A 402 ETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAHV-----TNAGIYFHLISGANDDQLQWPCPWQQAT 476 (592)
T ss_dssp SSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCSS-----SEEEEEEEEECCTTGGGSCSSCCSEEEE
T ss_pred eCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCCC-----ceEEEEEEEecCCCCCCccCCCCCCEEE
Confidence 345678999999999987 4689999886 579999999999763 599999999986543 467999 57899
Q ss_pred EEEEcCCCCcceeccceeec---------------C------------C-----CCCCCChhcccCccccCCCCCCeeeC
Q 021593 245 LRLLDQAQARHIAGKADFWF---------------S------------A-----SNPESGWARYVSFTYFNKPGNGCLVK 292 (310)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~f---------------~------------~-----~~~~~G~~~fi~~~~L~~~~~~~l~d 292 (310)
|.|+||+.....++.....| . + ++.+|||+.||+++.|+. ..||+|
T Consensus 477 ~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~~--r~fiK~ 554 (592)
T 4gwm_A 477 MTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLKS--RDFIKG 554 (592)
T ss_dssp EEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHTS--TTSSBT
T ss_pred EEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHhh--cCcccC
Confidence 99999975432211211222 1 1 124689999999999996 789999
Q ss_pred CEEEEEEEEEE
Q 021593 293 DVCLVEAEVTV 303 (310)
Q Consensus 293 D~l~i~~~v~i 303 (310)
|.|+|.+.|+=
T Consensus 555 d~~~i~~~~eD 565 (592)
T 4gwm_A 555 DDVYILLTVED 565 (592)
T ss_dssp TBEEEEEEEEE
T ss_pred CeEEEEEEEEe
Confidence 99999999854
No 25
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=53.20 E-value=3.2 Score=30.53 Aligned_cols=35 Identities=23% Similarity=0.160 Sum_probs=25.5
Q ss_pred cccccCCCceEEEEEcccccccccccceEEcCcEEE
Q 021593 10 RSVSEAPPTHYTVKIQSFSLLLKNSVEKYESGDFEA 45 (310)
Q Consensus 10 ~~~~~~~~~~~~~~I~nfs~~~~~~~~~~~S~~f~~ 45 (310)
++-+.+.+|-+.|+|.+|+..+. .+..+.|-.|.+
T Consensus 4 ~~cpv~~~gd~vwkIs~F~~RKp-eGty~nsvsFnI 38 (133)
T 3v0r_A 4 ASCPVTTEGDYVWKISEFYGRKP-EGTYYNSLGFNI 38 (133)
T ss_dssp CCSSSCCCCTTEEEEEEEEEEET-TSSSCSEEEEEE
T ss_pred CCCccccCCceEEEeeeeeeEcC-CCCceeeEEEEE
Confidence 34567788999999999998864 255566666644
No 26
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=33.72 E-value=14 Score=27.22 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=20.9
Q ss_pred cCCCCceEEEEEccccccC--CCeeecccEE
Q 021593 170 KDAPSIKHVWRIENFSKLR--SECCDSQVFS 198 (310)
Q Consensus 170 ~~~~~~~~~w~i~~fs~~~--~~~~~S~~f~ 198 (310)
+++..+-++|+|.+|+..+ +..+.|..|.
T Consensus 7 pv~~~gd~vwkIs~F~~RKpeGty~nsvsFn 37 (133)
T 3v0r_A 7 PVTTEGDYVWKISEFYGRKPEGTYYNSLGFN 37 (133)
T ss_dssp SSCCCCTTEEEEEEEEEEETTSSSCSEEEEE
T ss_pred ccccCCceEEEeeeeeeEcCCCCceeeEEEE
Confidence 3566788999999999877 3455555554
No 27
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=22.55 E-value=52 Score=22.84 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=21.1
Q ss_pred CChhcccCccccCCCCCCeee---CCEEEEEEEEEEEeeecC
Q 021593 271 SGWARYVSFTYFNKPGNGCLV---KDVCLVEAEVTVHGISNA 309 (310)
Q Consensus 271 ~G~~~fi~~~~L~~~~~~~l~---dD~l~i~~~v~i~~~t~~ 309 (310)
-||.+|+.-..|+. ..+++ .+.- +.+|.|...+.|
T Consensus 67 ~GW~~Fv~~~~L~~--GD~lvF~~~~~~--~f~V~If~~s~C 104 (104)
T 1yel_A 67 VGWENFVKDNNLED--GKYLQFIYDRDR--TFYVIIYGHNMC 104 (104)
T ss_dssp TTHHHHHHHHTCCT--TCEEEEEECSSS--EEEEEEECSSCC
T ss_pred cChHHHHHHcCCCC--CCEEEEEEcCCC--eEEEEEECCCCC
Confidence 48999999999985 23332 2211 246677665543
Done!