Query 021594
Match_columns 310
No_of_seqs 127 out of 135
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04791 LMBR1: LMBR1-like mem 100.0 9.8E-29 2.1E-33 246.1 22.1 272 3-286 155-468 (471)
2 KOG2296 Integral membrane prot 97.9 0.0058 1.3E-07 63.3 23.3 108 126-239 358-466 (673)
3 KOG3722 Lipocalin-interacting 97.3 0.0022 4.8E-08 63.8 11.4 138 91-238 311-451 (538)
4 PF04156 IncA: IncA protein; 94.1 0.85 1.8E-05 40.3 11.4 20 27-46 48-67 (191)
5 COG1422 Predicted membrane pro 93.9 1.8 3.8E-05 39.6 13.0 46 65-111 75-120 (201)
6 PF04420 CHD5: CHD5-like prote 91.1 0.89 1.9E-05 39.9 7.2 73 91-169 68-141 (161)
7 PF05529 Bap31: B-cell recepto 88.3 4.3 9.4E-05 36.1 9.5 19 6-24 103-121 (192)
8 PF00664 ABC_membrane: ABC tra 87.5 18 0.00039 31.2 14.1 18 8-25 122-139 (275)
9 TIGR02976 phageshock_pspB phag 83.4 6.2 0.00013 30.6 6.9 29 83-111 36-64 (75)
10 PF01277 Oleosin: Oleosin; In 83.3 8.8 0.00019 32.4 8.2 56 18-74 58-114 (118)
11 PF00957 Synaptobrevin: Synapt 82.3 21 0.00046 27.6 12.0 25 52-76 11-35 (89)
12 PRK10884 SH3 domain-containing 80.0 14 0.0003 33.8 9.1 24 88-111 138-161 (206)
13 PF14235 DUF4337: Domain of un 79.3 35 0.00075 30.0 11.0 36 86-121 77-112 (157)
14 TIGR01834 PHA_synth_III_E poly 79.2 9.7 0.00021 37.3 8.2 28 84-111 284-311 (320)
15 PF06667 PspB: Phage shock pro 78.6 4.7 0.0001 31.3 4.7 33 80-112 33-65 (75)
16 PF01956 DUF106: Integral memb 78.6 44 0.00095 29.0 11.6 21 88-108 65-85 (168)
17 KOG3088 Secretory carrier memb 78.0 4.2 9.1E-05 39.2 5.2 20 92-111 74-93 (313)
18 PF12537 DUF3735: Protein of u 77.8 14 0.0003 28.1 7.2 34 9-42 9-42 (72)
19 PF09712 PHA_synth_III_E: Poly 76.3 10 0.00022 36.5 7.4 25 86-110 269-293 (293)
20 PF03904 DUF334: Domain of unk 75.9 62 0.0013 30.3 12.0 26 160-185 183-208 (230)
21 PRK10884 SH3 domain-containing 74.4 28 0.0006 31.9 9.4 23 88-110 145-167 (206)
22 PF07889 DUF1664: Protein of u 71.6 18 0.00038 30.8 6.9 57 54-110 67-124 (126)
23 TIGR02978 phageshock_pspC phag 70.7 22 0.00048 30.0 7.3 30 87-116 82-111 (121)
24 PF10112 Halogen_Hydrol: 5-bro 69.4 83 0.0018 28.0 11.3 9 23-31 38-46 (199)
25 PF11026 DUF2721: Protein of u 68.0 73 0.0016 26.8 12.3 17 95-111 49-65 (130)
26 PRK05892 nucleoside diphosphat 67.8 49 0.0011 28.9 9.1 63 48-110 8-75 (158)
27 KOG1962 B-cell receptor-associ 66.6 48 0.001 30.8 9.1 29 7-35 100-128 (216)
28 PRK10263 DNA translocase FtsK; 66.0 80 0.0017 36.6 12.4 57 131-187 22-88 (1355)
29 PRK00888 ftsB cell division pr 65.6 53 0.0011 26.8 8.4 14 9-22 5-18 (105)
30 PF09925 DUF2157: Predicted me 63.3 92 0.002 26.3 11.0 75 131-238 35-109 (145)
31 TIGR01461 greB transcription e 62.7 48 0.001 28.9 8.1 60 48-109 5-65 (156)
32 TIGR02894 DNA_bind_RsfA transc 62.5 45 0.00097 29.6 7.8 23 90-112 119-141 (161)
33 PRK01885 greB transcription el 62.3 55 0.0012 28.6 8.4 60 48-107 7-72 (157)
34 PRK09458 pspB phage shock prot 61.8 15 0.00033 28.6 4.2 30 82-111 35-64 (75)
35 PF04120 Iron_permease: Low af 60.9 1.1E+02 0.0023 26.3 11.3 89 4-106 14-115 (132)
36 PF11241 DUF3043: Protein of u 60.2 29 0.00062 31.1 6.3 18 82-99 19-36 (170)
37 PF03449 GreA_GreB_N: Transcri 59.0 80 0.0017 24.2 8.4 62 48-111 6-68 (74)
38 PRK13922 rod shape-determining 58.9 1.2E+02 0.0026 28.3 10.7 11 66-76 73-83 (276)
39 PF06936 Selenoprotein_S: Sele 58.1 14 0.0003 33.5 4.0 36 3-40 22-58 (190)
40 PRK11174 cysteine/glutathione 57.6 2.3E+02 0.0051 29.1 14.0 31 9-39 145-180 (588)
41 TIGR01837 PHA_granule_1 poly(h 57.4 41 0.0009 28.0 6.5 25 86-110 93-117 (118)
42 TIGR00958 3a01208 Conjugate Tr 57.2 2.4E+02 0.0052 30.2 13.8 22 8-29 282-303 (711)
43 PF06637 PV-1: PV-1 protein (P 56.7 1.2E+02 0.0026 30.7 10.4 88 5-114 30-118 (442)
44 KOG4253 Tryptophan-rich basic 55.9 57 0.0012 29.0 7.2 12 93-104 74-85 (175)
45 PF07851 TMPIT: TMPIT-like pro 55.7 45 0.00097 32.9 7.3 73 174-251 199-281 (330)
46 KOG2662 Magnesium transporters 55.5 2.4E+02 0.0053 28.7 12.7 33 134-166 347-379 (414)
47 PF10226 DUF2216: Uncharacteri 55.2 39 0.00084 30.8 6.3 25 87-111 106-130 (195)
48 KOG3312 Predicted membrane pro 54.7 18 0.00038 32.0 3.9 48 51-106 34-81 (186)
49 PRK04654 sec-independent trans 53.8 97 0.0021 28.7 8.7 15 11-25 7-21 (214)
50 PF07586 HXXSHH: Protein of un 53.3 37 0.0008 32.3 6.3 31 81-111 176-206 (302)
51 PF07439 DUF1515: Protein of u 52.8 1E+02 0.0022 25.8 7.8 26 86-111 37-62 (112)
52 TIGR01541 tape_meas_lam_C phag 52.8 73 0.0016 31.3 8.3 26 82-107 76-101 (332)
53 cd07599 BAR_Rvs167p The Bin/Am 52.7 1.8E+02 0.0038 26.2 13.9 88 56-154 112-203 (216)
54 PRK10790 putative multidrug tr 51.8 2.9E+02 0.0063 28.5 13.2 11 28-38 171-181 (592)
55 TIGR02230 ATPase_gene1 F0F1-AT 50.7 1.4E+02 0.003 24.4 8.6 44 143-201 49-92 (100)
56 KOG0860 Synaptobrevin/VAMP-lik 50.5 1.5E+02 0.0033 24.9 10.9 22 90-111 58-79 (116)
57 PRK01026 tetrahydromethanopter 49.7 1.2E+02 0.0027 23.7 7.4 30 87-116 13-42 (77)
58 PF04645 DUF603: Protein of un 48.6 1E+02 0.0022 27.8 7.7 68 32-110 91-159 (181)
59 PRK10573 type IV pilin biogene 48.3 2.8E+02 0.006 27.2 13.2 51 126-176 164-215 (399)
60 TIGR02203 MsbA_lipidA lipid A 47.2 3.3E+02 0.0072 27.8 17.7 25 7-31 134-158 (571)
61 KOG0163 Myosin class VI heavy 46.7 50 0.0011 36.3 6.4 12 63-74 928-939 (1259)
62 TIGR00954 3a01203 Peroxysomal 46.6 3.9E+02 0.0084 28.4 15.0 47 55-108 272-318 (659)
63 PF04420 CHD5: CHD5-like prote 46.4 27 0.00058 30.6 3.8 41 67-111 45-85 (161)
64 COG3883 Uncharacterized protei 46.4 67 0.0015 30.7 6.7 55 53-107 43-98 (265)
65 PF14235 DUF4337: Domain of un 46.1 1.4E+02 0.0031 26.1 8.3 33 84-116 82-114 (157)
66 KOG2417 Predicted G-protein co 45.6 3.4E+02 0.0073 27.5 19.0 261 10-293 149-449 (462)
67 PF07798 DUF1640: Protein of u 45.1 2.2E+02 0.0047 25.1 10.7 23 125-147 153-175 (177)
68 PF06518 DUF1104: Protein of u 44.9 1.4E+02 0.0029 24.1 7.3 47 48-94 18-71 (93)
69 PF03961 DUF342: Protein of un 44.8 1E+02 0.0023 31.0 8.3 61 51-111 330-404 (451)
70 COG4026 Uncharacterized protei 44.7 1.1E+02 0.0025 28.8 7.7 25 51-75 131-155 (290)
71 PF01616 Orbi_NS3: Orbivirus N 44.3 2.5E+02 0.0053 25.8 9.7 71 28-107 21-92 (195)
72 KOG2264 Exostosin EXT1L [Signa 44.1 75 0.0016 33.8 7.1 8 170-177 191-198 (907)
73 TIGR03752 conj_TIGR03752 integ 44.0 92 0.002 32.2 7.7 25 53-77 64-88 (472)
74 PF11690 DUF3287: Protein of u 43.9 1.2E+02 0.0026 25.3 7.0 11 123-133 95-105 (109)
75 PF14362 DUF4407: Domain of un 43.5 2.9E+02 0.0063 26.1 11.3 27 87-113 140-166 (301)
76 PF02388 FemAB: FemAB family; 43.0 1.2E+02 0.0025 30.4 8.2 55 54-111 241-295 (406)
77 TIGR02857 CydD thiol reductant 42.8 3.8E+02 0.0082 27.2 13.8 12 90-101 205-216 (529)
78 PF06476 DUF1090: Protein of u 42.3 1.2E+02 0.0026 25.3 6.9 40 63-102 44-83 (115)
79 PRK10780 periplasmic chaperone 41.3 2.4E+02 0.0051 24.4 9.5 9 81-89 78-86 (165)
80 TIGR03752 conj_TIGR03752 integ 41.2 83 0.0018 32.5 6.9 26 52-77 70-95 (472)
81 COG1579 Zn-ribbon protein, pos 40.8 1.2E+02 0.0027 28.5 7.5 27 85-111 85-111 (239)
82 PF04791 LMBR1: LMBR1-like mem 40.8 33 0.00071 34.5 4.0 23 52-74 200-222 (471)
83 PRK13182 racA polar chromosome 40.7 1.8E+02 0.004 25.9 8.3 61 55-115 85-151 (175)
84 PF12729 4HB_MCP_1: Four helix 40.5 2E+02 0.0043 23.4 8.4 35 82-116 102-136 (181)
85 KOG3088 Secretory carrier memb 39.9 40 0.00087 32.7 4.1 17 186-202 203-219 (313)
86 KOG0380 Sterol O-acyltransfera 39.8 4.7E+02 0.01 27.5 13.1 92 109-206 294-389 (523)
87 KOG2391 Vacuolar sorting prote 39.7 1.4E+02 0.0031 29.6 7.9 26 51-76 210-235 (365)
88 PRK11176 lipid transporter ATP 38.7 4.5E+02 0.0098 27.0 15.1 18 8-25 146-163 (582)
89 TIGR02449 conserved hypothetic 38.6 1.7E+02 0.0037 22.1 6.6 19 59-77 4-22 (65)
90 PF11932 DUF3450: Protein of u 38.4 1.3E+02 0.0028 27.8 7.3 56 56-111 43-99 (251)
91 PF04111 APG6: Autophagy prote 38.3 1.8E+02 0.0039 28.2 8.5 12 201-212 189-200 (314)
92 PHA02132 hypothetical protein 38.2 40 0.00088 26.1 3.2 30 277-306 12-43 (86)
93 PRK11546 zraP zinc resistance 38.2 2.1E+02 0.0046 24.9 8.0 59 48-106 44-106 (143)
94 PTZ00265 multidrug resistance 38.2 6.1E+02 0.013 30.0 14.0 38 5-42 175-217 (1466)
95 PF11460 DUF3007: Protein of u 37.8 2.3E+02 0.0051 23.4 7.9 52 13-68 13-79 (104)
96 PF10498 IFT57: Intra-flagella 37.7 1.3E+02 0.0029 29.8 7.6 21 56-76 292-312 (359)
97 PF06679 DUF1180: Protein of u 37.6 33 0.0007 30.5 3.0 25 277-301 97-121 (163)
98 PF15361 RIC3: Resistance to i 37.5 89 0.0019 27.3 5.7 21 87-107 129-149 (152)
99 PF04799 Fzo_mitofusin: fzo-li 37.1 2.3E+02 0.0051 25.4 8.3 24 89-112 144-167 (171)
100 COG4026 Uncharacterized protei 36.5 95 0.0021 29.3 5.9 23 58-80 145-167 (290)
101 PF03715 Noc2: Noc2p family; 36.4 93 0.002 30.0 6.2 44 56-99 242-285 (299)
102 PF10828 DUF2570: Protein of u 36.4 1.9E+02 0.0042 23.5 7.2 20 88-107 59-78 (110)
103 PRK01622 OxaA-like protein pre 36.1 2E+02 0.0043 27.1 8.2 18 61-78 90-107 (256)
104 COG4372 Uncharacterized protei 35.9 1.3E+02 0.0029 30.5 7.1 27 88-114 258-284 (499)
105 TIGR03007 pepcterm_ChnLen poly 35.5 3.1E+02 0.0068 27.6 10.1 25 86-110 352-376 (498)
106 KOG4005 Transcription factor X 35.2 1.6E+02 0.0035 28.0 7.2 54 54-107 89-150 (292)
107 PRK14127 cell division protein 35.0 1.9E+02 0.0041 24.0 6.9 44 32-76 7-51 (109)
108 PF10944 DUF2630: Protein of u 35.0 1.7E+02 0.0036 23.2 6.2 54 58-111 4-60 (81)
109 PF06667 PspB: Phage shock pro 34.9 2.2E+02 0.0047 22.1 7.3 44 32-76 18-63 (75)
110 KOG3863 bZIP transcription fac 34.9 84 0.0018 33.4 5.9 13 34-46 486-498 (604)
111 KOG4343 bZIP transcription fac 34.6 94 0.002 32.7 6.1 22 90-111 317-338 (655)
112 PF09006 Surfac_D-trimer: Lung 34.6 50 0.0011 23.4 2.9 23 92-114 2-24 (46)
113 PF10359 Fmp27_WPPW: RNA pol I 34.5 1.4E+02 0.0031 30.5 7.5 56 56-111 164-222 (475)
114 PHA03048 IMV membrane protein; 33.6 45 0.00098 26.9 2.9 23 3-25 46-68 (93)
115 TIGR02204 MsbA_rel ABC transpo 32.9 5.5E+02 0.012 26.2 14.6 17 9-25 140-156 (576)
116 COG1340 Uncharacterized archae 32.9 1.6E+02 0.0034 28.7 7.0 30 51-80 37-66 (294)
117 PF07851 TMPIT: TMPIT-like pro 32.8 1.5E+02 0.0032 29.3 6.9 33 84-116 63-95 (330)
118 PRK09458 pspB phage shock prot 32.7 2.4E+02 0.0052 22.0 7.2 52 18-76 10-63 (75)
119 PF09798 LCD1: DNA damage chec 32.6 1.9E+02 0.0042 31.2 8.2 45 51-104 4-48 (654)
120 PF14257 DUF4349: Domain of un 32.6 4E+02 0.0088 24.6 12.6 63 48-111 125-191 (262)
121 KOG1029 Endocytic adaptor prot 31.9 1.5E+02 0.0033 32.8 7.2 23 53-75 322-344 (1118)
122 PF05767 Pox_A14: Poxvirus vir 31.8 51 0.0011 26.6 2.9 23 3-25 47-69 (92)
123 PRK09546 zntB zinc transporter 31.7 1.2E+02 0.0025 29.1 6.0 40 226-274 261-300 (324)
124 PF13094 CENP-Q: CENP-Q, a CEN 31.7 2E+02 0.0044 24.7 7.0 64 48-111 20-84 (160)
125 TIGR01149 mtrG N5-methyltetrah 31.6 2.3E+02 0.005 21.8 6.3 21 88-108 11-31 (70)
126 PF05529 Bap31: B-cell recepto 31.6 2.3E+02 0.005 25.0 7.5 25 87-111 159-183 (192)
127 COG3937 Uncharacterized conser 31.6 2.9E+02 0.0062 23.0 7.3 24 88-111 82-105 (108)
128 PF03189 Otopetrin: Otopetrin; 31.3 5.8E+02 0.013 26.0 12.1 34 208-242 296-329 (441)
129 COG3074 Uncharacterized protei 31.2 2.5E+02 0.0054 21.7 6.7 15 62-76 25-39 (79)
130 TIGR01462 greA transcription e 31.1 2.2E+02 0.0047 24.4 7.1 63 48-110 2-70 (151)
131 PF10779 XhlA: Haemolysin XhlA 30.7 2.3E+02 0.005 21.2 10.5 13 133-145 57-69 (71)
132 PF03908 Sec20: Sec20; InterP 30.6 2.6E+02 0.0057 21.8 11.4 18 131-148 71-88 (92)
133 COG1340 Uncharacterized archae 30.4 1.4E+02 0.0031 29.0 6.2 28 52-79 73-100 (294)
134 PRK13169 DNA replication intia 30.2 1.2E+02 0.0026 25.2 5.0 24 54-77 21-44 (110)
135 PRK13729 conjugal transfer pil 30.1 1.9E+02 0.0041 30.0 7.4 22 86-107 101-122 (475)
136 PF12725 DUF3810: Protein of u 30.0 2.1E+02 0.0045 27.8 7.5 58 9-76 57-116 (318)
137 PF04111 APG6: Autophagy prote 29.7 2.3E+02 0.0049 27.5 7.6 22 89-110 99-120 (314)
138 PF09548 Spore_III_AB: Stage I 29.5 3.7E+02 0.008 23.4 8.4 15 126-141 153-167 (170)
139 PF14723 SSFA2_C: Sperm-specif 29.3 4.2E+02 0.0091 23.9 8.5 30 81-110 137-166 (179)
140 PF03428 RP-C: Replication pro 29.3 2E+02 0.0044 25.7 6.7 46 56-111 128-173 (177)
141 cd07588 BAR_Amphiphysin The Bi 29.1 2.5E+02 0.0055 25.7 7.5 19 54-72 104-122 (211)
142 PF11239 DUF3040: Protein of u 29.0 2.4E+02 0.0052 21.6 6.3 27 84-113 4-30 (82)
143 TIGR00383 corA magnesium Mg(2+ 28.8 1.4E+02 0.003 28.2 6.0 40 226-274 255-294 (318)
144 KOG0972 Huntingtin interacting 28.7 1.4E+02 0.003 29.3 5.8 25 86-110 339-363 (384)
145 PF03938 OmpH: Outer membrane 28.7 3.5E+02 0.0076 22.6 10.0 30 82-111 72-102 (158)
146 PF02932 Neur_chan_memb: Neuro 28.5 1.6E+02 0.0035 24.2 5.7 23 125-147 215-237 (237)
147 TIGR01404 FlhB_rel_III type II 28.5 1.1E+02 0.0024 30.1 5.4 28 12-39 174-201 (342)
148 PF03962 Mnd1: Mnd1 family; I 28.5 2.3E+02 0.005 25.4 7.0 20 90-109 111-130 (188)
149 PF04787 Pox_H7: Late protein 28.5 4.1E+02 0.0088 23.3 8.5 70 38-111 59-133 (147)
150 TIGR02894 DNA_bind_RsfA transc 28.3 2.9E+02 0.0063 24.6 7.3 19 90-108 126-144 (161)
151 KOG4797 Transcriptional regula 28.2 88 0.0019 26.2 3.8 25 87-111 65-89 (123)
152 PRK09609 hypothetical protein; 27.8 5.9E+02 0.013 25.0 16.2 21 91-111 140-160 (312)
153 cd07612 BAR_Bin2 The Bin/Amphi 27.8 2.9E+02 0.0063 25.5 7.6 25 52-76 102-126 (211)
154 PRK11160 cysteine/glutathione 27.8 7E+02 0.015 25.8 14.6 22 55-76 194-215 (574)
155 PRK06800 fliH flagellar assemb 27.8 1.1E+02 0.0023 28.1 4.6 22 56-77 32-53 (228)
156 cd07611 BAR_Amphiphysin_I_II T 27.7 3.2E+02 0.0069 25.3 7.8 57 52-108 102-158 (211)
157 KOG4404 Tandem pore domain K+ 27.6 3.2E+02 0.0068 27.2 8.1 21 269-291 220-240 (350)
158 PRK05431 seryl-tRNA synthetase 27.5 3.5E+02 0.0076 27.3 8.9 23 89-111 73-95 (425)
159 KOG0980 Actin-binding protein 27.5 2.5E+02 0.0053 31.5 8.0 36 212-250 611-646 (980)
160 PF08581 Tup_N: Tup N-terminal 27.2 3E+02 0.0066 21.4 7.9 28 87-114 37-64 (79)
161 PF05991 NYN_YacP: YacP-like N 27.2 1E+02 0.0022 26.9 4.4 14 82-95 152-165 (166)
162 PRK06330 transcript cleavage f 27.1 2.5E+02 0.0054 30.7 8.0 62 48-111 569-631 (718)
163 PF13268 DUF4059: Protein of u 26.9 2.6E+02 0.0056 21.6 5.9 25 220-244 43-67 (72)
164 PF11932 DUF3450: Protein of u 26.7 2.2E+02 0.0048 26.3 6.8 22 56-77 36-57 (251)
165 TIGR01554 major_cap_HK97 phage 26.6 1.7E+02 0.0036 28.7 6.2 18 52-69 3-20 (378)
166 PF09177 Syntaxin-6_N: Syntaxi 26.4 3.2E+02 0.007 21.5 8.1 55 56-111 6-61 (97)
167 PF11917 DUF3435: Protein of u 26.4 1.9E+02 0.0041 28.9 6.7 13 41-54 270-282 (418)
168 PF08657 DASH_Spc34: DASH comp 26.3 2.9E+02 0.0063 26.2 7.5 22 88-109 238-259 (259)
169 PF13268 DUF4059: Protein of u 26.2 71 0.0015 24.7 2.7 28 277-305 13-40 (72)
170 PF05393 Hum_adeno_E3A: Human 26.1 58 0.0012 26.2 2.3 27 263-295 28-55 (94)
171 TIGR00328 flhB flagellar biosy 25.8 1.3E+02 0.0029 29.6 5.4 27 13-39 176-202 (347)
172 PRK06342 transcription elongat 25.7 1.8E+02 0.0039 25.5 5.6 55 48-110 31-85 (160)
173 PF06409 NPIP: Nuclear pore co 25.6 3.7E+02 0.008 25.5 7.8 31 87-117 153-183 (265)
174 KOG3119 Basic region leucine z 25.5 2.6E+02 0.0057 26.5 7.1 23 49-71 191-213 (269)
175 PF10046 BLOC1_2: Biogenesis o 25.5 3.5E+02 0.0076 21.6 7.9 21 90-110 67-87 (99)
176 PF05461 ApoL: Apolipoprotein 25.5 2.9E+02 0.0064 26.9 7.6 24 88-111 61-84 (313)
177 COG4298 Uncharacterized protei 25.5 1.3E+02 0.0029 24.1 4.2 21 22-42 28-49 (95)
178 TIGR01005 eps_transp_fam exopo 25.4 4.2E+02 0.0091 28.5 9.5 20 88-107 375-394 (754)
179 PF05615 THOC7: Tho complex su 25.0 1.4E+02 0.0031 25.0 4.8 15 56-70 82-96 (139)
180 PHA02898 virion envelope prote 25.0 79 0.0017 25.4 2.9 23 3-25 47-69 (92)
181 PF02403 Seryl_tRNA_N: Seryl-t 24.9 3.5E+02 0.0076 21.4 8.9 26 86-111 71-96 (108)
182 PLN02777 photosystem I P subun 24.8 2E+02 0.0043 25.8 5.6 52 103-167 78-129 (167)
183 PF04210 MtrG: Tetrahydrometha 24.8 3.3E+02 0.0071 21.0 6.7 19 89-107 12-30 (70)
184 PRK11176 lipid transporter ATP 24.8 7.7E+02 0.017 25.3 13.6 16 90-105 226-241 (582)
185 TIGR00219 mreC rod shape-deter 24.7 5.1E+02 0.011 24.7 8.9 93 1-110 3-105 (283)
186 PF12725 DUF3810: Protein of u 24.7 2.1E+02 0.0046 27.8 6.4 43 160-202 6-49 (318)
187 KOG0981 DNA topoisomerase I [R 24.7 2.9E+02 0.0064 29.6 7.7 62 53-114 634-701 (759)
188 PF12999 PRKCSH-like: Glucosid 24.5 4.4E+02 0.0095 23.7 7.9 16 92-107 156-171 (176)
189 PF06785 UPF0242: Uncharacteri 24.4 3.6E+02 0.0078 27.0 7.8 100 8-109 44-147 (401)
190 KOG2629 Peroxisomal membrane a 24.4 5E+02 0.011 25.3 8.7 30 48-77 115-144 (300)
191 COG2433 Uncharacterized conser 24.3 2.5E+02 0.0055 30.1 7.2 24 53-76 420-443 (652)
192 PRK10789 putative multidrug tr 24.2 8E+02 0.017 25.3 13.5 11 29-39 144-154 (569)
193 PRK14720 transcript cleavage f 24.0 3.3E+02 0.0072 30.6 8.4 62 48-111 752-814 (906)
194 COG4582 Uncharacterized protei 23.9 2.5E+02 0.0054 26.2 6.3 97 51-150 45-142 (244)
195 KOG3231 Predicted assembly/vac 23.7 1.4E+02 0.003 26.9 4.5 22 90-111 30-51 (208)
196 PRK12772 bifunctional flagella 23.6 39 0.00085 35.8 1.2 45 14-59 440-489 (609)
197 PF03962 Mnd1: Mnd1 family; I 23.6 3.1E+02 0.0068 24.6 6.9 22 92-113 106-127 (188)
198 PRK12721 secretion system appa 23.6 1.6E+02 0.0034 29.2 5.4 27 13-39 176-202 (349)
199 PF10845 DUF2576: Protein of u 23.5 91 0.002 22.0 2.6 19 93-111 15-33 (48)
200 TIGR00999 8a0102 Membrane Fusi 23.5 3.6E+02 0.0077 24.3 7.5 20 90-109 55-74 (265)
201 PRK06937 type III secretion sy 23.4 3.8E+02 0.0081 24.0 7.4 29 45-73 18-52 (204)
202 PRK06298 type III secretion sy 23.3 1.6E+02 0.0035 29.2 5.4 26 14-39 178-203 (356)
203 PF11431 Transport_MerF: Membr 23.3 59 0.0013 23.0 1.7 14 19-32 3-16 (46)
204 PRK08156 type III secretion sy 23.2 1.6E+02 0.0035 29.3 5.4 27 13-39 171-197 (361)
205 PF06156 DUF972: Protein of un 23.2 4.2E+02 0.0092 21.7 7.0 21 56-76 23-43 (107)
206 PLN02678 seryl-tRNA synthetase 23.2 4.7E+02 0.01 26.8 8.8 23 89-111 78-100 (448)
207 PF12534 DUF3733: Leucine-rich 23.2 3.1E+02 0.0068 20.7 5.7 30 121-150 21-50 (65)
208 PLN03086 PRLI-interacting fact 23.1 2.4E+02 0.0051 30.0 6.8 13 105-117 63-75 (567)
209 PRK09108 type III secretion sy 23.0 1.6E+02 0.0035 29.1 5.4 27 13-39 178-204 (353)
210 KOG4136 Predicted mitochondria 22.9 5.9E+02 0.013 23.2 10.0 24 173-197 62-85 (198)
211 KOG0345 ATP-dependent RNA heli 22.8 1.8E+02 0.004 30.4 5.7 51 25-76 442-499 (567)
212 PF06013 WXG100: Proteins of 1 22.8 2.9E+02 0.0064 19.7 9.6 29 48-76 4-32 (86)
213 PF15086 UPF0542: Uncharacteri 22.7 1.1E+02 0.0025 23.7 3.3 20 23-42 22-41 (74)
214 PRK10722 hypothetical protein; 22.6 1.9E+02 0.0042 27.4 5.4 23 88-110 189-211 (247)
215 PRK08307 stage III sporulation 22.5 5.3E+02 0.012 22.6 8.5 19 93-111 129-147 (171)
216 COG4842 Uncharacterized protei 22.4 4E+02 0.0086 21.1 8.3 70 48-117 7-89 (97)
217 PF11262 Tho2: Transcription f 22.4 2.6E+02 0.0056 26.9 6.5 18 186-203 154-171 (298)
218 KOG3433 Protein involved in me 22.3 2.2E+02 0.0047 26.1 5.5 23 89-111 123-145 (203)
219 COG2274 SunT ABC-type bacterio 22.3 8.4E+02 0.018 26.6 10.9 20 25-44 296-315 (709)
220 PLN02320 seryl-tRNA synthetase 22.2 4.3E+02 0.0094 27.6 8.4 22 90-111 138-159 (502)
221 PRK10697 DNA-binding transcrip 22.2 1.4E+02 0.003 25.2 4.0 30 87-116 79-108 (118)
222 KOG1162 Predicted small molecu 22.2 9.4E+02 0.02 25.9 11.0 67 171-240 260-328 (617)
223 PF07028 DUF1319: Protein of u 22.1 3.5E+02 0.0076 23.1 6.4 29 86-114 57-85 (126)
224 PF05837 CENP-H: Centromere pr 22.0 4.3E+02 0.0093 21.4 8.5 26 85-110 54-79 (106)
225 COG2770 ResE FOG: HAMP domain 21.9 3.5E+02 0.0076 20.5 6.0 52 56-107 26-77 (83)
226 PF03245 Phage_lysis: Bacterio 21.9 3.5E+02 0.0075 22.6 6.5 26 82-107 35-60 (125)
227 PF05478 Prominin: Prominin; 21.9 1.1E+03 0.023 25.9 14.1 30 127-156 412-441 (806)
228 PRK05771 V-type ATP synthase s 21.9 3.7E+02 0.008 28.5 8.1 14 226-239 443-456 (646)
229 PRK13824 replication initiatio 21.9 2.6E+02 0.0057 28.2 6.7 46 56-111 140-185 (404)
230 PF04508 Pox_A_type_inc: Viral 21.8 1.1E+02 0.0024 18.6 2.4 16 90-105 2-17 (23)
231 PF10917 DUF2708: Protein of u 21.6 39 0.00084 23.5 0.5 16 273-288 3-18 (43)
232 PF08278 DnaG_DnaB_bind: DNA p 21.6 3E+02 0.0066 22.2 6.0 11 82-92 114-124 (127)
233 PF15007 CEP44: Centrosomal sp 21.5 2.7E+02 0.0058 23.9 5.7 39 37-77 78-122 (131)
234 TIGR02132 phaR_Bmeg polyhydrox 21.5 4.6E+02 0.0099 23.9 7.3 58 54-111 78-136 (189)
235 PLN00171 photosystem light-ha 21.5 1.2E+02 0.0025 29.9 3.9 41 29-77 52-93 (324)
236 TIGR02868 CydC thiol reductant 21.4 8.6E+02 0.019 24.6 15.6 22 55-76 187-208 (529)
237 PRK00226 greA transcription el 21.4 4.8E+02 0.01 22.3 7.4 63 48-110 7-75 (157)
238 TIGR00414 serS seryl-tRNA synt 21.4 5E+02 0.011 26.2 8.6 22 90-111 77-98 (418)
239 PF07889 DUF1664: Protein of u 21.4 5.1E+02 0.011 22.0 7.8 22 88-109 88-109 (126)
240 PF14182 YgaB: YgaB-like prote 21.3 4.1E+02 0.009 20.9 6.6 37 87-130 38-74 (79)
241 PF13870 DUF4201: Domain of un 21.2 5.5E+02 0.012 22.3 8.8 26 87-112 150-175 (177)
242 KOG3990 Uncharacterized conser 21.2 2.6E+02 0.0056 26.9 6.0 55 57-111 238-296 (305)
243 COG1938 Archaeal enzymes of AT 21.1 1.8E+02 0.0039 27.5 5.0 29 48-76 204-232 (244)
244 PF09744 Jnk-SapK_ap_N: JNK_SA 21.0 4.8E+02 0.01 22.9 7.4 23 87-109 87-109 (158)
245 PF01166 TSC22: TSC-22/dip/bun 21.0 1.1E+02 0.0024 22.7 2.8 25 87-111 12-36 (59)
246 PRK11637 AmiB activator; Provi 21.0 3.2E+02 0.007 27.3 7.1 17 90-106 234-250 (428)
247 COG2433 Uncharacterized conser 20.9 3.5E+02 0.0077 29.0 7.4 25 53-77 434-458 (652)
248 PF05644 Miff: Mitochondrial a 20.9 2.3E+02 0.0049 26.8 5.6 22 90-111 196-217 (246)
249 PF08614 ATG16: Autophagy prot 20.9 1.3E+02 0.0029 26.7 4.0 25 87-111 114-138 (194)
250 PRK02201 putative inner membra 20.9 2.8E+02 0.0061 27.6 6.5 36 63-101 161-196 (357)
251 PF06694 Plant_NMP1: Plant nuc 20.7 7E+02 0.015 24.6 8.9 86 28-117 151-236 (325)
252 PF10146 zf-C4H2: Zinc finger- 20.7 5.4E+02 0.012 24.0 8.0 25 52-76 12-36 (230)
253 COG4920 Predicted membrane pro 20.7 4.2E+02 0.0092 24.8 7.1 33 12-44 23-55 (249)
254 PRK06286 putative monovalent c 20.7 1.2E+02 0.0026 24.4 3.2 32 4-36 3-34 (91)
255 PF07106 TBPIP: Tat binding pr 20.6 5.5E+02 0.012 22.1 8.5 25 87-111 114-138 (169)
256 PF10186 Atg14: UV radiation r 20.6 3.2E+02 0.007 25.1 6.6 19 223-242 255-273 (302)
257 PRK05702 flhB flagellar biosyn 20.5 2E+02 0.0043 28.6 5.4 27 13-39 183-209 (359)
258 PHA02680 ORF090 IMV phosphoryl 20.3 1.1E+02 0.0023 24.7 2.8 23 3-25 48-70 (91)
259 PF10112 Halogen_Hydrol: 5-bro 20.2 6.1E+02 0.013 22.4 10.1 6 27-32 39-44 (199)
260 PRK10132 hypothetical protein; 20.2 5E+02 0.011 21.4 8.2 28 49-76 6-33 (108)
261 smart00787 Spc7 Spc7 kinetocho 20.1 3.1E+02 0.0068 26.7 6.6 18 49-66 202-219 (312)
No 1
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=99.96 E-value=9.8e-29 Score=246.06 Aligned_cols=272 Identities=25% Similarity=0.372 Sum_probs=194.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCccccChHHHHHHHHHHHHHHHHHHHHH-----------
Q 021594 3 TTFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAA----------- 71 (310)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfv~y~gvGlaalPi~lI~~f~~Rpk~~is~~e~~~~~~~i~~~a~~Lle~~----------- 71 (310)
.++..|++|+..+.|++++++|+|+||+++|.++++++.+..+..-..+|..+.+.++++..+++.+..
T Consensus 155 ~~~~~~~ial~~~~Gl~l~i~~~g~Glv~iP~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 234 (471)
T PF04791_consen 155 SSLLPFLIALSNFWGLFLFIILLGYGLVAIPRDLWRSSNSYFRAAKLEDEAAEAKEKLDDIIEKLRRLRRILRDVEELRS 234 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhccccchhhhhcchhHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Confidence 467889999999999999999999999999999999998711110111111222222222222221111
Q ss_pred ----------HHHHHhhhc-------CCCChhhhHHHHHHHHHHHHHHHHHHHHHhhcccCcc--------------chh
Q 021594 72 ----------DTLHQEERS-------GSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEK--------------AET 120 (310)
Q Consensus 72 ----------~~lq~~~~~-------g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~y~~~~~--------------~~~ 120 (310)
+++++..++ ++.++++++..+..++....++++.+.+++.|++.+. -++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 314 (471)
T PF04791_consen 235 ELDTILNELPKEIQELIESSNQEERSTNLGRSWRKILDSENKLLLLLKRDLKSLQRLYRREEQWKTLVLSRFFRNLRFQW 314 (471)
T ss_pred HHHHHHHhhHHHHHHHHhccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHH
Confidence 111110000 1112222222333344444444444444433332211 111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMM 200 (310)
Q Consensus 121 ~~~~~vl~~~~kLl~Gii~lllSi~w~i~iil~~i~~~~~~~~LN~~fi~l~~~fpl~~~i~~~~~~~Yll~csi~G~~~ 200 (310)
.|. ..++|+.+.++|+++.++|++|..|-+.....+ +++.+++..++.++.++.++.+++++|+.+|+.+|+.+
T Consensus 315 ~~~-~~l~~~~~~il~Vi~~ilSlli~~sEl~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~l~Ym~~ct~~glf~ 388 (471)
T PF04791_consen 315 IWY-CYLRPYVYKILAVIFAILSLLIVWSELTFFFRS-----FLFSIFISSDSKFGFLGQLLSFLFLFYMCFCTYYGLFK 388 (471)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 223 678999999999999999999999998777766 89999999999998889999999999999999999999
Q ss_pred HhhHhhheeeeecccCCCchhhHHHHHHHHHHHHHHHHHHhhhhhHhhHHHhHHHHHHHHHhcccccceeeeehhhHHHH
Q 021594 201 LGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIA 280 (310)
Q Consensus 201 ~GiRf~~~~i~pmr~~~T~~nslLfn~~Llll~s~av~qFc~~~f~~ya~~t~i~~~f~~~~~nl~~~~~~~~~nv~~y~ 280 (310)
+|+ +++|+|+||+|.+++.|+|+++++..+.+..+|+..++..|+..|+.+++ .++.++.+.|+++.+++++++
T Consensus 389 ~~~----f~~y~l~p~~ts~~~sL~f~a~~l~Rl~~PL~fNfl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 462 (471)
T PF04791_consen 389 LKI----FRFYPLVPHHTSDNSSLFFSAIYLCRLAPPLCFNFLGMIRYDSTTSFNNI--VQIQSLLGLGFFYYFPIFILL 462 (471)
T ss_pred hhh----heeccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc--cccccceecchHHHHHHHHHH
Confidence 997 99999999999999999999999999999999999999999999999887 666789999998877666666
Q ss_pred HHHHHH
Q 021594 281 FVVLAG 286 (310)
Q Consensus 281 ~l~~~~ 286 (310)
+.+...
T Consensus 463 ~~~~t~ 468 (471)
T PF04791_consen 463 FCILTY 468 (471)
T ss_pred HHHHHH
Confidence 555443
No 2
>KOG2296 consensus Integral membrane protein [General function prediction only]
Probab=97.85 E-value=0.0058 Score=63.30 Aligned_cols=108 Identities=17% Similarity=0.091 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 021594 126 VLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRL 205 (310)
Q Consensus 126 vl~~~~kLl~Gii~lllSi~w~i~iil~~i~~~~~~~~LN~~fi~l~~~fpl~~~i~~~~~~~Yll~csi~G~~~~GiRf 205 (310)
.+.+.++.+++++-.+.|.+++++=.-.-..++.+.++.+-+..+.++..=+ ++.-.++..|+..|+.+-.++++++
T Consensus 358 ~l~~~f~~~~~i~~~~Ms~~Vl~sE~tf~~~~~~Lsl~a~vi~~~~~~~~~i--~~~af~~l~Y~~~ctY~sl~r~~~~- 434 (673)
T KOG2296|consen 358 ILKKPFQMVLAIVMAIMSAAILLSEATFLLSKYDLSLFAIVISSAKSDELTV--QFVAFVPLVYMCYCTYYSLFRIQFL- 434 (673)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhheeeeccchHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444588999999999998888887666666777788888888888865443 5666677889999999999999987
Q ss_pred hheeeeecccC-CCchhhHHHHHHHHHHHHHHHHH
Q 021594 206 VFITIHPMKWG-ATLMNSFLFNVGLILLCSISVIQ 239 (310)
Q Consensus 206 ~~~~i~pmr~~-~T~~nslLfn~~Llll~s~av~q 239 (310)
..|-+-|+ +|--+|+||-++|+.=.+.++++
T Consensus 435 ---~yY~L~P~~qTn~~SLlfs~~llCRLTPPiCl 466 (673)
T KOG2296|consen 435 ---MYYSLTPRRQTNEVSLLFSASLLCRLTPPICL 466 (673)
T ss_pred ---HhheeccccccchHHHHHHHHHHHhcCchhhh
Confidence 78888888 99999999999999888888876
No 3
>KOG3722 consensus Lipocalin-interacting membrane receptor (LIMR) [Defense mechanisms]
Probab=97.33 E-value=0.0022 Score=63.75 Aligned_cols=138 Identities=22% Similarity=0.264 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHH---
Q 021594 91 VKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEV--- 167 (310)
Q Consensus 91 l~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~vl~~~~kLl~Gii~lllSi~w~i~iil~~i~~~~~~~~LN~~--- 167 (310)
++.++++++.++.+-..+++. +..+ +|-. -++++...++=.++.-+|++.++.-++.-+.+...-|---+-
T Consensus 311 ~~~l~~~~~e~~~qr~~l~~r--rt~S---a~eR-nlvyP~am~lLLv~T~~SvLlVa~NtL~LLi~e~AlP~~trg~~i 384 (538)
T KOG3722|consen 311 YRELKEYVKELRTQRSSLEKR--RTAS---AWER-NLVYPLAMLLLLVLTTCSVLLVATNTLELLIGERALPVYTQGFAI 384 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--hhhH---HHHH-hhhhHHHHHHHHHHhhhHHHHHHHhHHHHHhCcccCccccccccc
Confidence 445555555555555555553 2211 3443 445558888888888999999998888888764332222211
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhhheeeeecccCCCchhhHHHHHHHHHHHHHHHH
Q 021594 168 FIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVI 238 (310)
Q Consensus 168 fi~l~~~fpl~~~i~~~~~~~Yll~csi~G~~~~GiRf~~~~i~pmr~~~T~~nslLfn~~Llll~s~av~ 238 (310)
=+..-+-|.++|..+=.++++|++.+|++|--.+ .+++=..=|+++|.|--..-||+.++..|.|+=
T Consensus 385 g~~Sls~fG~fGA~lEv~LIfYlmvtSvVGfYSl----pffr~~~Pkr~dTtM~qIIgNcv~iLVlSSALP 451 (538)
T KOG3722|consen 385 GVHSLSKFGLFGACIEVLLIFYLMVTSVVGFYSL----PFFRSLRPKRDDTTMPQIIGNCVSILVLSSALP 451 (538)
T ss_pred cceehhhccchHHHHHHHHHHHHHHHHHhhhhcc----hhhhccCcCccCCccchHhhhceeeeeeccccH
Confidence 1222346777899999999999999999996554 355555557788888889999999988877653
No 4
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.08 E-value=0.85 Score=40.30 Aligned_cols=20 Identities=35% Similarity=0.705 Sum_probs=13.5
Q ss_pred hhhhhhhHHHHhhcccCCcc
Q 021594 27 VGIACLPLGLIFSFIRRPKA 46 (310)
Q Consensus 27 vGlaalPi~lI~~f~~Rpk~ 46 (310)
+|++.++.++..-...+|.+
T Consensus 48 lg~vL~~~g~~~~~~~~~~~ 67 (191)
T PF04156_consen 48 LGVVLLSLGLLCLLSKRPVQ 67 (191)
T ss_pred HHHHHHHHHHHHHHHccccc
Confidence 46666777777666677765
No 5
>COG1422 Predicted membrane protein [Function unknown]
Probab=93.89 E-value=1.8 Score=39.63 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 65 RELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 65 ~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+++.++.+|.|++.++..+ ++|-.+++++|++..+..++++++-..
T Consensus 75 ~~~qk~m~efq~e~~eA~~-~~d~~~lkkLq~~qmem~~~Q~elmk~ 120 (201)
T COG1422 75 KELQKMMKEFQKEFREAQE-SGDMKKLKKLQEKQMEMMDDQRELMKM 120 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444332221 347779999999999999999998876
No 6
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=91.05 E-value=0.89 Score=39.87 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-ChhHHHHH
Q 021594 91 VKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLH-PFLNEVFI 169 (310)
Q Consensus 91 l~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~vl~~~~kLl~Gii~lllSi~w~i~iil~~i~~~~~~-~~LN~~fi 169 (310)
.-+++|+..++++|.+.++++....... ....+.....++.+....++ ..|.=.--++.+++. .+ .|+++++-
T Consensus 68 waKl~Rk~~kl~~el~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l-~~~~rk~pV~~lp~~-~~p~p~~~lLS 141 (161)
T PF04420_consen 68 WAKLNRKLDKLEEELEKLNKSLSSEKSS----FDKSLSKVLWVLTTLPFFVL-RFWYRKTPVFYLPKG-WFPWPFEWLLS 141 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHH----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhh-heeecCceEEEECch-hhHHHHHHhee
Confidence 3356666666666666666652222221 11344443333333333333 334444455566643 44 77787765
No 7
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=88.26 E-value=4.3 Score=36.11 Aligned_cols=19 Identities=16% Similarity=0.308 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021594 6 PEYVVALATIVGSVLFSIF 24 (310)
Q Consensus 6 ~~f~i~~l~~iG~~lfv~y 24 (310)
+.|+.|+..++++++.-++
T Consensus 103 N~YIsGf~LfL~l~I~r~~ 121 (192)
T PF05529_consen 103 NMYISGFALFLSLVIRRVH 121 (192)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3688888888888877665
No 8
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=87.45 E-value=18 Score=31.24 Aligned_cols=18 Identities=17% Similarity=0.336 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 021594 8 YVVALATIVGSVLFSIFG 25 (310)
Q Consensus 8 f~i~~l~~iG~~lfv~y~ 25 (310)
.+..+...++.+.+.++.
T Consensus 122 ~~~~~~~~i~~~~~~~~~ 139 (275)
T PF00664_consen 122 IISSIISIIFSLILLFFI 139 (275)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhccccc
Confidence 344444555555555443
No 9
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=83.37 E-value=6.2 Score=30.64 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=19.0
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 83 KGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 83 ~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
.+..|.++++++-+.-+.|++|.+.||.-
T Consensus 36 ls~~d~~~L~~L~~~a~rm~eRI~tLE~I 64 (75)
T TIGR02976 36 LSTDDQALLQELYAKADRLEERIDTLERI 64 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666777777776665
No 10
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=83.28 E-value=8.8 Score=32.36 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=41.7
Q ss_pred HHHHHHHhhhhhhhhh-HHHHhhcccCCccccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 18 SVLFSIFGGVGIACLP-LGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTL 74 (310)
Q Consensus 18 ~~lfv~y~gvGlaalP-i~lI~~f~~Rpk~~is~~e~~~~~~~i~~~a~~Lle~~~~l 74 (310)
.--|..-|+.|++++- ++++..+.++.++ -..+|..+.|.++++.++.+-|++||.
T Consensus 58 ~~Gfl~sg~~g~~~ls~lsW~~~y~rg~~~-~~~~q~d~Ak~ri~d~a~~v~~kake~ 114 (118)
T PF01277_consen 58 VAGFLTSGAFGLTALSSLSWMYNYFRGRHP-PGPDQLDYAKRRIADTASYVGQKAKEV 114 (118)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccCCC-CCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3335555666666554 5778888887777 788888888889999998888888775
No 11
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=82.26 E-value=21 Score=27.64 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 52 QYIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 52 e~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
|..+.+....+-.++++|.|+.++.
T Consensus 11 ~v~~v~~im~~Ni~~ll~Rge~L~~ 35 (89)
T PF00957_consen 11 QVEEVKNIMRENIDKLLERGEKLEE 35 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHH
Confidence 4445555555556666666655554
No 12
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.98 E-value=14 Score=33.85 Aligned_cols=24 Identities=8% Similarity=0.221 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 88 RKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+++.++++++...+..+.+.++..
T Consensus 138 ~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 138 KEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666555544
No 13
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=79.26 E-value=35 Score=29.96 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccCccchhh
Q 021594 86 KWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETS 121 (310)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~y~~~~~~~~~ 121 (310)
+.+++.++.++|...|+++-++.|..+++...++..
T Consensus 77 ~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~ 112 (157)
T PF14235_consen 77 RYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHR 112 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccch
Confidence 456677777777777777777777776555544433
No 14
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=79.17 E-value=9.7 Score=37.28 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=23.8
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 84 GRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 84 ~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+-=.|++++.+.++++.|||+++.|++.
T Consensus 284 nlPTRsElDe~~krL~ELrR~vr~L~k~ 311 (320)
T TIGR01834 284 NLPTRSELDEAHQRIQQLRREVKSLKKR 311 (320)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3348899999999999999999999887
No 15
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=78.58 E-value=4.7 Score=31.31 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=25.3
Q ss_pred cCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 021594 80 SGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMY 112 (310)
Q Consensus 80 ~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~y 112 (310)
+++.+..|+++++++-++-+.|++|.+.||.--
T Consensus 33 ~~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 33 SQGLSEEDEQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335567788888888888888888888888763
No 16
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=78.56 E-value=44 Score=28.99 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 021594 88 RKNVKSVEKELLQLEEDVKLL 108 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~l 108 (310)
....+++++++..+.+++.++
T Consensus 65 ~~~~~~l~~~~~~~~~~~~~~ 85 (168)
T PF01956_consen 65 FKKPKKLEKRQMELMEKQQEM 85 (168)
T ss_pred ccCHHHHHHHHHHHHHHHHHH
Confidence 334555666666666665555
No 17
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.99 E-value=4.2 Score=39.21 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 021594 92 KSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 92 ~~l~~~~~~Le~~~~~le~~ 111 (310)
++|+|++.+|+||+|++...
T Consensus 74 eEL~Rke~ELdRREr~~a~~ 93 (313)
T KOG3088|consen 74 EELRRKEQELDRRERALARA 93 (313)
T ss_pred HHHHHHHHHHhHHHHHHhhc
Confidence 45666777888888888875
No 18
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=77.84 E-value=14 Score=28.07 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhccc
Q 021594 9 VVALATIVGSVLFSIFGGVGIACLPLGLIFSFIR 42 (310)
Q Consensus 9 ~i~~l~~iG~~lfv~y~gvGlaalPi~lI~~f~~ 42 (310)
++.=++.+|..+..+--|+|=+..|...+.-|.+
T Consensus 9 ~l~ri~ViGVt~mAiLSG~gaVstpy~~~~~~~~ 42 (72)
T PF12537_consen 9 VLSRIGVIGVTLMAILSGFGAVSTPYYYFSYFRR 42 (72)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHccHHHHHHHHHh
Confidence 5667889999999999999999999999996655
No 19
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=76.35 E-value=10 Score=36.54 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 86 KWRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
=.|++++.+.++++.|+|++|.|++
T Consensus 269 PTr~evd~l~k~l~eLrre~r~Lkr 293 (293)
T PF09712_consen 269 PTRSEVDELYKRLHELRREVRALKR 293 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3899999999999999999998863
No 20
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=75.95 E-value=62 Score=30.30 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=16.7
Q ss_pred CCChhHHHHHHhhhhhhhHHHHHHHH
Q 021594 160 LHPFLNEVFIKLDDLWGLLGTAAFAF 185 (310)
Q Consensus 160 ~~~~LN~~fi~l~~~fpl~~~i~~~~ 185 (310)
+..++|...-...+.+..+=|+.|++
T Consensus 183 ly~~ia~~ik~se~~~~~lwyi~Y~v 208 (230)
T PF03904_consen 183 LYKAIASKIKASESFWTYLWYIAYLV 208 (230)
T ss_pred HHHHHHHHHhhhHhHHHHHHHHHHhh
Confidence 45566666666666677666666654
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.37 E-value=28 Score=31.92 Aligned_cols=23 Identities=4% Similarity=0.043 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 021594 88 RKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
++++..++.|.+.|+.+.+.++.
T Consensus 145 ~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555544444444
No 22
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=71.63 E-value=18 Score=30.82 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 54 IKEATELGKKARELKKAADTLHQEERSG-SKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 54 ~~~~~~i~~~a~~Lle~~~~lq~~~~~g-~~~~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
..+-..+..+.++..|..++++++-.+- ..-..-+.+++.+++.++.||....++|.
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333334444444445555554432211 11123455666777777777776666654
No 23
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=70.71 E-value=22 Score=29.96 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~y~~~~ 116 (310)
-++.+++++++.+.+|++.+++|...+..+
T Consensus 82 ~~~~l~~~~~~~~~~e~Rl~~mE~yVTS~~ 111 (121)
T TIGR02978 82 PRQALREVKREFRDLERRLRNMERYVTSDT 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345699999999999999999999866443
No 24
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=69.36 E-value=83 Score=28.01 Aligned_cols=9 Identities=33% Similarity=0.674 Sum_probs=3.6
Q ss_pred HHhhhhhhh
Q 021594 23 IFGGVGIAC 31 (310)
Q Consensus 23 ~y~gvGlaa 31 (310)
++++++++.
T Consensus 38 l~~~~~~~~ 46 (199)
T PF10112_consen 38 LIGAVAFAV 46 (199)
T ss_pred HHHHHHHHH
Confidence 334444443
No 25
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=68.00 E-value=73 Score=26.81 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 021594 95 EKELLQLEEDVKLLEEM 111 (310)
Q Consensus 95 ~~~~~~Le~~~~~le~~ 111 (310)
++|.+.|++|.+.+..+
T Consensus 49 ~~el~~L~rR~~li~~a 65 (130)
T PF11026_consen 49 RRELRILRRRARLIRRA 65 (130)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88899999999888887
No 26
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=67.76 E-value=49 Score=28.94 Aligned_cols=63 Identities=10% Similarity=0.167 Sum_probs=39.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCh-----hhhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGR-----KWRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~-----k~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
||..-|.+.+.+++..-.+--+..++++.-+..|-+|. -.|++...++++.+.|+++.+.++.
T Consensus 8 lT~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A~i 75 (158)
T PRK05892 8 LAPAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTGPT 75 (158)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhCEE
Confidence 88888877777776665555566677777766674431 2345555666666666665555433
No 27
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=66.58 E-value=48 Score=30.78 Aligned_cols=29 Identities=7% Similarity=0.021 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 021594 7 EYVVALATIVGSVLFSIFGGVGIACLPLG 35 (310)
Q Consensus 7 ~f~i~~l~~iG~~lfv~y~gvGlaalPi~ 35 (310)
.|+-|+..|++.++=-+++-+.-.+-=-+
T Consensus 100 ~YisGf~LFL~lvI~R~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 100 LYISGFVLFLSLVIRRLHTLLRELATLRA 128 (216)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37777888888777777766655444333
No 28
>PRK10263 DNA translocase FtsK; Provisional
Probab=66.03 E-value=80 Score=36.65 Aligned_cols=57 Identities=21% Similarity=0.180 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------CChhHHHHHHhhh-hhhhHHHHHHHHHH
Q 021594 131 AKLVLGILGFIVSVAWVAHIVIYLLINPPL---------HPFLNEVFIKLDD-LWGLLGTAAFAFFC 187 (310)
Q Consensus 131 ~kLl~Gii~lllSi~w~i~iil~~i~~~~~---------~~~LN~~fi~l~~-~fpl~~~i~~~~~~ 187 (310)
++-++|++++++++.++++++=|.-.++.. +|..-.+=-++++ .+-+||+..|.+.+
T Consensus 22 L~E~~gIlLlllAlfL~lALiSYsPsDPSwS~sa~~~~V~Nl~GiVGA~LAD~L~~LFGl~AYLLP~ 88 (1355)
T PRK10263 22 LLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPV 88 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccCCcccccCcccccccccchHHHHHHHHHHHHHhHHHHHHHH
Confidence 777889999999999999999888776532 3333333344444 34455655555543
No 29
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=65.59 E-value=53 Score=26.80 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 021594 9 VVALATIVGSVLFS 22 (310)
Q Consensus 9 ~i~~l~~iG~~lfv 22 (310)
++.++.+++++.|.
T Consensus 5 ~~vll~ll~~l~y~ 18 (105)
T PRK00888 5 TLLLLALLVWLQYS 18 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554443
No 30
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=63.29 E-value=92 Score=26.33 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhhheee
Q 021594 131 AKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITI 210 (310)
Q Consensus 131 ~kLl~Gii~lllSi~w~i~iil~~i~~~~~~~~LN~~fi~l~~~fpl~~~i~~~~~~~Yll~csi~G~~~~GiRf~~~~i 210 (310)
.-..+|.+++..++++++- ++.++.| +..=+++...++..+.+.|.....
T Consensus 35 ~l~~lGall~~~gii~fvA---~nW~~i~-------------------~~~k~~~~~~~~~~~~~~~~~~~~-------- 84 (145)
T PF09925_consen 35 ILLYLGALLLGLGIILFVA---ANWDDIP-------------------RLAKLGLLLALLLLSYVGGFWLWR-------- 84 (145)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHcc-------------------HHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 5556777778888777654 4554422 333444444444444444433221
Q ss_pred eecccCCCchhhHHHHHHHHHHHHHHHH
Q 021594 211 HPMKWGATLMNSFLFNVGLILLCSISVI 238 (310)
Q Consensus 211 ~pmr~~~T~~nslLfn~~Llll~s~av~ 238 (310)
|++++...++++-.+++.-.+++++
T Consensus 85 ---~~~~~~~~~l~~l~~~l~ga~iali 109 (145)
T PF09925_consen 85 ---RRSPRLAEALLLLGAVLFGALIALI 109 (145)
T ss_pred ---ccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887777666655
No 31
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=62.70 E-value=48 Score=28.93 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=35.7
Q ss_pred cChHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 021594 48 ITRSQYIKEATELGKKA-RELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLE 109 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a-~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le 109 (310)
+|..-+.+.+.+++..- .+.-+..++++.-+..|-.| +-.+++.-+++...+++|.+.|+
T Consensus 5 lT~~G~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDls--ENaeY~aak~~~~~le~rI~~L~ 65 (156)
T TIGR01461 5 ITPEGYEKLKQELNYLWREERPEVTQKVTWAASLGDRS--ENADYQYGKKRLREIDRRVRFLT 65 (156)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCcc--hhhhhHHHHHHHHHHHHHHHHHH
Confidence 78887877777766543 45666777777766666443 33344444444444555444444
No 32
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=62.45 E-value=45 Score=29.62 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 021594 90 NVKSVEKELLQLEEDVKLLEEMY 112 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~y 112 (310)
+...|+.|...|+.+...+++.|
T Consensus 119 ~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 119 RNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 33
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=62.34 E-value=55 Score=28.57 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=36.6
Q ss_pred cChHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCCCh-----hhhHHHHHHHHHHHHHHHHHHH
Q 021594 48 ITRSQYIKEATELGKK-ARELKKAADTLHQEERSGSKGR-----KWRKNVKSVEKELLQLEEDVKL 107 (310)
Q Consensus 48 is~~e~~~~~~~i~~~-a~~Lle~~~~lq~~~~~g~~~~-----k~rr~l~~l~~~~~~Le~~~~~ 107 (310)
+|.+-|.+.+.+++.. ..+.-|..++++.-+..|-.+. -.|++...++++.+.|+++...
T Consensus 7 lT~~g~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~ 72 (157)
T PRK01885 7 ITREGYARLKQELDYLWREERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLEN 72 (157)
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 8888888888787764 4466777777887777773331 1234444555555555544443
No 34
>PRK09458 pspB phage shock protein B; Provisional
Probab=61.85 E-value=15 Score=28.55 Aligned_cols=30 Identities=10% Similarity=0.264 Sum_probs=17.7
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 82 SKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 82 ~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+.+..|++.++++-+..+.+++|.+.||.-
T Consensus 35 ~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~I 64 (75)
T PRK09458 35 GLSQEEQQRLAQLTEKAERMRERIQALEAI 64 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666654
No 35
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=60.87 E-value=1.1e+02 Score=26.29 Aligned_cols=89 Identities=19% Similarity=0.174 Sum_probs=49.0
Q ss_pred cHHHHHHHHHHHHHHHHHH------------HHhhhhhhhhhHHH-HhhcccCCccccChHHHHHHHHHHHHHHHHHHHH
Q 021594 4 TFPEYVVALATIVGSVLFS------------IFGGVGIACLPLGL-IFSFIRRPKAVITRSQYIKEATELGKKARELKKA 70 (310)
Q Consensus 4 sf~~f~i~~l~~iG~~lfv------------~y~gvGlaalPi~l-I~~f~~Rpk~~is~~e~~~~~~~i~~~a~~Lle~ 70 (310)
|+..|++++...+||+..- +.|+.+++.+=+-+ |+.- |.. +.+.+..|-++|++.
T Consensus 14 s~~~f~~~~~~Ii~W~i~Gp~~~~sdtWQLviNt~ttIitFlmvfLIQn~-----------q~R-d~~al~~KLdeLi~~ 81 (132)
T PF04120_consen 14 SPWAFVIAVAVIIVWAISGPVFGFSDTWQLVINTATTIITFLMVFLIQNT-----------QNR-DTKALQAKLDELIRA 81 (132)
T ss_pred CHHHHHHHHHHHHHHHHHhccccCcchHHHHHccHHHHHHHHHHHHHHhh-----------hhh-HHHHHHHHHHHHHHH
Confidence 6788999999999999874 34555555443333 3332 222 233566666777766
Q ss_pred HHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHH
Q 021594 71 ADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVK 106 (310)
Q Consensus 71 ~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~ 106 (310)
.++-+++-- .....+-+++++++++.+.+.++.+
T Consensus 82 ~~~a~n~li--~iE~l~~~el~~~~~~~~~~~~~~~ 115 (132)
T PF04120_consen 82 VKEARNELI--DIEDLTEEELEEIRKRYERLAEQAR 115 (132)
T ss_pred HHHHHHHhC--CcccCCHHHHHHHHHHHHHHHHHhh
Confidence 664433211 1222244566666555555544433
No 36
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=60.17 E-value=29 Score=31.05 Aligned_cols=18 Identities=22% Similarity=0.062 Sum_probs=8.5
Q ss_pred CCChhhhHHHHHHHHHHH
Q 021594 82 SKGRKWRKNVKSVEKELL 99 (310)
Q Consensus 82 ~~~~k~rr~l~~l~~~~~ 99 (310)
.++..||++-++-.+|.+
T Consensus 19 ~l~p~drKeak~~~R~~~ 36 (170)
T PF11241_consen 19 PLVPEDRKEAKKRAREAR 36 (170)
T ss_pred CCCCccHHHHHHHHHHHH
Confidence 334445555554444443
No 37
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=58.98 E-value=80 Score=24.19 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=42.4
Q ss_pred cChHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 48 ITRSQYIKEATELGKK-ARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 48 is~~e~~~~~~~i~~~-a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+|..-|.+.+.+++.- -.+.-+..++++.-+..|-.+ +-.+++.-+++...++.+.+.|+..
T Consensus 6 lT~~g~~~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDls--ENaeY~aAke~q~~le~rI~~Le~~ 68 (74)
T PF03449_consen 6 LTPEGYEKLQAELEHLKNVERPEIAEEIAEAREQGDLS--ENAEYHAAKERQAFLEARIRELEER 68 (74)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSST--SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcc--cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888878787773 447778888888887777443 4445666666666666666666553
No 38
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=58.88 E-value=1.2e+02 Score=28.28 Aligned_cols=11 Identities=18% Similarity=0.576 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 021594 66 ELKKAADTLHQ 76 (310)
Q Consensus 66 ~Lle~~~~lq~ 76 (310)
++.++++++++
T Consensus 73 ~l~~en~~L~~ 83 (276)
T PRK13922 73 DLREENEELKK 83 (276)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 39
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=58.08 E-value=14 Score=33.53 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=1.4
Q ss_pred ccHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhHHHHhhc
Q 021594 3 TTFPEYVVA-LATIVGSVLFSIFGGVGIACLPLGLIFSF 40 (310)
Q Consensus 3 vsf~~f~i~-~l~~iG~~lfv~y~gvGlaalPi~lI~~f 40 (310)
+++....++ ++.--||.+ +++.+++..+=--+...+
T Consensus 22 ~~~l~~tv~~~L~~yGWyi--l~~~I~ly~l~qkl~~~~ 58 (190)
T PF06936_consen 22 LSFLQSTVGSFLSSYGWYI--LFGCILLYLLWQKLSPSF 58 (190)
T ss_dssp ------------------------------------HHH
T ss_pred HHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHHHHH
Confidence 345555566 889999965 477777765544455544
No 40
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=57.56 E-value=2.3e+02 Score=29.15 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhh-----hhhhhhhHHHHhh
Q 021594 9 VVALATIVGSVLFSIFGG-----VGIACLPLGLIFS 39 (310)
Q Consensus 9 ~i~~l~~iG~~lfv~y~g-----vGlaalPi~lI~~ 39 (310)
+.+++..++.+.+.++-+ +.++.+|+-++-.
T Consensus 145 ~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~ 180 (588)
T PRK11174 145 ALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFM 180 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433322 3445556554443
No 41
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=57.37 E-value=41 Score=27.95 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 86 KWRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
-.|+++++|++++..|+++.+.|+.
T Consensus 93 ~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 93 PSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677888999999999988888765
No 42
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=57.18 E-value=2.4e+02 Score=30.15 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 021594 8 YVVALATIVGSVLFSIFGGVGI 29 (310)
Q Consensus 8 f~i~~l~~iG~~lfv~y~gvGl 29 (310)
.+..++.++|.+.++++.+..+
T Consensus 282 ~l~~~~~~i~~~~~l~~~s~~l 303 (711)
T TIGR00958 282 LLRNLVMLLGLLGFMLWLSPRL 303 (711)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 3444555555555555544443
No 43
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=56.66 E-value=1.2e+02 Score=30.67 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CC
Q 021594 5 FPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSG-SK 83 (310)
Q Consensus 5 f~~f~i~~l~~iG~~lfv~y~gvGlaalPi~lI~~f~~Rpk~~is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g-~~ 83 (310)
|++-.|-+++++|.++|.+||-+--.+ . ..-....++++.|-.++..+...+..- ..
T Consensus 30 lF~SLIQ~LIIlgLVLFmVYGn~h~~t------------------e----~~lq~~e~ra~~L~~q~~~L~~~~~NLtke 87 (442)
T PF06637_consen 30 LFVSLIQFLIILGLVLFMVYGNVHVST------------------E----SRLQATEQRADRLYSQVVGLRASQANLTKE 87 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcchhh------------------H----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345568889999999999998542211 1 133345566777777777776543211 00
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021594 84 GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (310)
Q Consensus 84 ~~k~rr~l~~l~~~~~~Le~~~~~le~~y~~ 114 (310)
=+-..++-+...++.-..++|.+.++.++.|
T Consensus 88 LN~t~~~K~~imq~ll~~rrdl~rinasfrQ 118 (442)
T PF06637_consen 88 LNLTTRAKDAIMQMLLNARRDLDRINASFRQ 118 (442)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0113344455555666666666666666554
No 44
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=55.89 E-value=57 Score=28.99 Aligned_cols=12 Identities=8% Similarity=0.509 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 021594 93 SVEKELLQLEED 104 (310)
Q Consensus 93 ~l~~~~~~Le~~ 104 (310)
+++|+.+.|.++
T Consensus 74 RlnRKi~kl~~e 85 (175)
T KOG4253|consen 74 RLNRKINKLDKE 85 (175)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 45
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=55.75 E-value=45 Score=32.86 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=34.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----------HhhheeeeecccCCCchhhHHHHHHHHHHHHHHHHHHhhh
Q 021594 174 LWGLLGTAAFAFFCFYLLLAVIAGAMMLGL----------RLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCST 243 (310)
Q Consensus 174 ~fpl~~~i~~~~~~~Yll~csi~G~~~~Gi----------Rf~~~~i~pmr~~~T~~nslLfn~~Llll~s~av~qFc~~ 243 (310)
.||= |..--..---++.+|.+-|++.+=- |-..-+-|+|..---=.+|=.+-....++.- .||-+
T Consensus 199 twp~-~~~~~~fr~~fl~f~~~~~~vq~lQ~~YQ~~~Ly~l~AlG~~~~mdvt~eG~~s~~~~~L~fLlPf----Lf~~~ 273 (330)
T PF07851_consen 199 TWPD-GEAYQKFRPQFLLFSLYQSVVQFLQYRYQRGCLYRLRALGKRHNMDVTVEGFQSWMWRGLTFLLPF----LFFGQ 273 (330)
T ss_pred cCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCccceeeecccccchhccHHHHHHH----HHHHH
Confidence 4662 4444444555666666666665421 1112345666543111222233333333333 36666
Q ss_pred hhHhhHHH
Q 021594 244 AFGYYAQA 251 (310)
Q Consensus 244 ~f~~ya~~ 251 (310)
.|.-|-..
T Consensus 274 ~~q~yn~~ 281 (330)
T PF07851_consen 274 FFQLYNAY 281 (330)
T ss_pred HHHHHHHH
Confidence 67777553
No 46
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=55.50 E-value=2.4e+02 Score=28.68 Aligned_cols=33 Identities=21% Similarity=0.113 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHH
Q 021594 134 VLGILGFIVSVAWVAHIVIYLLINPPLHPFLNE 166 (310)
Q Consensus 134 l~Gii~lllSi~w~i~iil~~i~~~~~~~~LN~ 166 (310)
-+|+....-++..-+--++..+.+-|+.++++.
T Consensus 347 qleL~Lt~gT~~~s~~~~va~ifGMNl~~~l~~ 379 (414)
T KOG2662|consen 347 QLELLLTIGTFCLSVFSVVAGIFGMNLPSSLEE 379 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchhcc
Confidence 345555555555555666778888777777765
No 47
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=55.19 E-value=39 Score=30.81 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
-|+++..+++++..||.+++.|...
T Consensus 106 mr~eV~~Y~~KL~eLE~kq~~L~rE 130 (195)
T PF10226_consen 106 MRQEVAQYQQKLKELEDKQEELIRE 130 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888888777665
No 48
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=54.69 E-value=18 Score=31.96 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHH
Q 021594 51 SQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVK 106 (310)
Q Consensus 51 ~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~ 106 (310)
+.|+..|+++++++++|... ..+.+ ++-||..-++.+|+|+.|.+..|
T Consensus 34 ~~Yk~LKa~vdK~sKKLE~~-------K~~~~-~s~~k~~kkKieR~Ee~LK~~nR 81 (186)
T KOG3312|consen 34 DKYKRLKAEVDKQSKKLEKK-------KEENG-DSNDKSKKKKIERVEEKLKNNNR 81 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------hhhcc-cchhhHHHHHHHHHHHHHhcccc
Confidence 44888888877776665322 11211 12345555555555555544333
No 49
>PRK04654 sec-independent translocase; Provisional
Probab=53.79 E-value=97 Score=28.75 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHh
Q 021594 11 ALATIVGSVLFSIFG 25 (310)
Q Consensus 11 ~~l~~iG~~lfv~y~ 25 (310)
+=+.+|+.+..+++|
T Consensus 7 ~ELLlI~VVALlV~G 21 (214)
T PRK04654 7 GELTLIAVVALVVLG 21 (214)
T ss_pred HHHHHHHHHHHHhcC
Confidence 345666666666666
No 50
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=53.29 E-value=37 Score=32.34 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=26.8
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 81 GSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 81 g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
++.+..||.+++++-..+|++|++....+..
T Consensus 176 ~~Lg~~Dr~kLd~yl~sireiE~rl~~~~~~ 206 (302)
T PF07586_consen 176 RRLGAEDRQKLDQYLDSIREIEKRLQQAEAW 206 (302)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3568889999999999999999999777655
No 51
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=52.81 E-value=1e+02 Score=25.78 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+.-|+++.++.++..||.....++.+
T Consensus 37 ~mhrRlDElV~Rv~~lEs~~~~lk~d 62 (112)
T PF07439_consen 37 SMHRRLDELVERVTTLESSVSTLKAD 62 (112)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 35578899999999999988888877
No 52
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=52.76 E-value=73 Score=31.28 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=10.7
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHH
Q 021594 82 SKGRKWRKNVKSVEKELLQLEEDVKL 107 (310)
Q Consensus 82 ~~~~k~rr~l~~l~~~~~~Le~~~~~ 107 (310)
+++.+.|..+++..+..+..+++.+.
T Consensus 76 G~g~~~~~r~~~~~~i~~~~~~q~~~ 101 (332)
T TIGR01541 76 GLGDKQRERLDARLQIDRTFRKQQRD 101 (332)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333333333333
No 53
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=52.69 E-value=1.8e+02 Score=26.23 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----cCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhhhHHHHHHH
Q 021594 56 EATELGKKARELKKAADTLHQEER----SGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYLA 131 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~~~----~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~vl~~~~ 131 (310)
-++.|++|.++++|.-+...+-.. .+.++.||.+++.+.+++...-+++.+.+... +..-+-..+
T Consensus 112 i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~-----------Lk~eLP~l~ 180 (216)
T cd07599 112 IRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNEL-----------LKSELPKLL 180 (216)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhHHHH
Confidence 444445555555544433332111 11234445445554444444444444444333 112222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021594 132 KLVLGILGFIVSVAWVAHIVIYL 154 (310)
Q Consensus 132 kLl~Gii~lllSi~w~i~iil~~ 154 (310)
.+...++-=++.-...+|+-+|.
T Consensus 181 ~~~~~~~~~~~~~~~~~ql~~~~ 203 (216)
T cd07599 181 ALADEFLPPLFKSFYYIQLNIYY 203 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554443
No 54
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=51.77 E-value=2.9e+02 Score=28.51 Aligned_cols=11 Identities=27% Similarity=0.455 Sum_probs=4.8
Q ss_pred hhhhhhHHHHh
Q 021594 28 GIACLPLGLIF 38 (310)
Q Consensus 28 GlaalPi~lI~ 38 (310)
.++.+|+-++-
T Consensus 171 ~l~~~~i~~~~ 181 (592)
T PRK10790 171 AIMIFPAVLVV 181 (592)
T ss_pred HHHHHHHHHHH
Confidence 33444554443
No 55
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=50.67 E-value=1.4e+02 Score=24.45 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 143 SVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCFYLLLAVIAGAMML 201 (310)
Q Consensus 143 Si~w~i~iil~~i~~~~~~~~LN~~fi~l~~~fpl~~~i~~~~~~~Yll~csi~G~~~~ 201 (310)
++...+.+++-.... .|||+.||- +. .+++. .++.....|+..+
T Consensus 49 G~~~v~pil~G~~lG-----------~WLD~~~~t-~~-~~tl~--~lllGv~~G~~n~ 92 (100)
T TIGR02230 49 GWSVAIPTLLGVAVG-----------IWLDRHYPS-PF-SWTLT--MLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHhhcCC-Cc-HHHHH--HHHHHHHHHHHHH
Confidence 344444555555544 678887775 44 22222 5555666666554
No 56
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.47 E-value=1.5e+02 Score=24.91 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 021594 90 NVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+|+.|+++-..|+.-....+..
T Consensus 58 kL~~L~drad~L~~~as~F~~~ 79 (116)
T KOG0860|consen 58 KLDELDDRADQLQAGASQFEKT 79 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444443
No 57
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=49.69 E-value=1.2e+02 Score=23.70 Aligned_cols=30 Identities=27% Similarity=0.247 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~y~~~~ 116 (310)
+..+.+++++++..+|++++--...+.|.-
T Consensus 13 ~~~d~~~i~~rLD~iEeKVEftn~Ei~Qr~ 42 (77)
T PRK01026 13 DPKDFKEIQKRLDEIEEKVEFTNAEIFQRI 42 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666655444433433
No 58
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=48.59 E-value=1e+02 Score=27.83 Aligned_cols=68 Identities=24% Similarity=0.339 Sum_probs=38.7
Q ss_pred hhHHHHhhcccCCccccChHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 32 LPLGLIFSFIRRPKAVITRSQYIK-EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 32 lPi~lI~~f~~Rpk~~is~~e~~~-~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
|-+++|.+|-+ |.. +-..+..+++.|..+...+|++-+... .+-..++++.++.|+..+.++-+..|.
T Consensus 91 L~l~FI~sf~~----------Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~-k~~~n~~i~slk~EL~d~iKe~e~~em 159 (181)
T PF04645_consen 91 LELSFIDSFNQ----------YKNLELKSIKKEIEILRLKISSLQKEINKNK-KKDLNEEIESLKSELNDLIKEREIREM 159 (181)
T ss_pred HhhHHHHHHHH----------hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34577777655 444 555666777888888888887532111 011123555666666666555444443
No 59
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=48.26 E-value=2.8e+02 Score=27.24 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CChhHHHHHHhhhhhh
Q 021594 126 VLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPL-HPFLNEVFIKLDDLWG 176 (310)
Q Consensus 126 vl~~~~kLl~Gii~lllSi~w~i~iil~~i~~~~~-~~~LN~~fi~l~~~fp 176 (310)
...|.+-++.+++.+++-+.+++=.+..+..+... .|+.-.++..++++++
T Consensus 164 l~YP~~ll~~~~~v~~~~~~~vlP~f~~~~~~~~~~lP~~T~~l~~~s~~l~ 215 (399)
T PRK10573 164 LRYPLIILAVALLVVLAMLHFVLPEFAAIYRSFNTPLPLLTRGILALSDFLI 215 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 33454555555555555555555555555443222 4555566666665544
No 60
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=47.18 E-value=3.3e+02 Score=27.80 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh
Q 021594 7 EYVVALATIVGSVLFSIFGGVGIAC 31 (310)
Q Consensus 7 ~f~i~~l~~iG~~lfv~y~gvGlaa 31 (310)
.++..+..+++.+++++|-+..++.
T Consensus 134 ~~i~~~~~~~~~~~~l~~~~~~l~~ 158 (571)
T TIGR02203 134 VLVRETLTVIGLFIVLLYYSWQLTL 158 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444555555555555555554433
No 61
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=46.70 E-value=50 Score=36.27 Aligned_cols=12 Identities=33% Similarity=0.343 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 021594 63 KARELKKAADTL 74 (310)
Q Consensus 63 ~a~~Lle~~~~l 74 (310)
+.+|+.|..|.+
T Consensus 928 k~qE~~E~ER~r 939 (1259)
T KOG0163|consen 928 KIQELAEAERKR 939 (1259)
T ss_pred HHHHHHHHHHHh
Confidence 344444444333
No 62
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=46.60 E-value=3.9e+02 Score=28.44 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 021594 55 KEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLL 108 (310)
Q Consensus 55 ~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~l 108 (310)
+...+......|.++-.++++.- +....+.++++++.+.+.+...+.
T Consensus 272 ~~~~~~~~~~~e~l~g~~~I~~~-------~~e~~e~~~~~~~~~~l~~~~~~~ 318 (659)
T TIGR00954 272 ALEGEYRYVHSRLIMNSEEIAFY-------QGNKVEKETVMSSFYRLVEHLNLI 318 (659)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHh-------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666652 223344455555555544444433
No 63
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=46.44 E-value=27 Score=30.56 Aligned_cols=41 Identities=20% Similarity=0.119 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 67 LKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 67 Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
|..+-+++++|. +..|..| |..+.-+-.|++++-.+++|+.
T Consensus 45 l~~Ei~~l~~E~--~~iS~qD--eFAkwaKl~Rk~~kl~~el~~~ 85 (161)
T PF04420_consen 45 LRKEILQLKREL--NAISAQD--EFAKWAKLNRKLDKLEEELEKL 85 (161)
T ss_dssp HHHHHHHHHHHH--TTS-TTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCcHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444432 2334334 7777777666666666666665
No 64
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.42 E-value=67 Score=30.73 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCChhhhHHHHHHHHHHHHHHHHHHH
Q 021594 53 YIKEATELGKKARELKKAADTLHQEERSG-SKGRKWRKNVKSVEKELLQLEEDVKL 107 (310)
Q Consensus 53 ~~~~~~~i~~~a~~Lle~~~~lq~~~~~g-~~~~k~rr~l~~l~~~~~~Le~~~~~ 107 (310)
..+.+..+..+.+.|..+..+++.+..+- ..-.+...++++++++...++++.+.
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477788888999999999998865443 22334556777777777777765544
No 65
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=46.09 E-value=1.4e+02 Score=26.11 Aligned_cols=33 Identities=6% Similarity=0.087 Sum_probs=24.8
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 021594 84 GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (310)
Q Consensus 84 ~~k~rr~l~~l~~~~~~Le~~~~~le~~y~~~~ 116 (310)
..+.|++-++++++....|++.++++..+++-+
T Consensus 82 ~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~ 114 (157)
T PF14235_consen 82 KARYKSEAEELEAKAKEAEAESDHALHHHHRFD 114 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcccchhH
Confidence 445677788888888888888888887766544
No 66
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=45.63 E-value=3.4e+02 Score=27.48 Aligned_cols=261 Identities=17% Similarity=0.258 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCccccChHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhh
Q 021594 10 VALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAAD----------TLHQEER 79 (310)
Q Consensus 10 i~~l~~iG~~lfv~y~gvGlaalPi~lI~~f~~Rpk~~is~~e~~~~~~~i~~~a~~Lle~~~----------~lq~~~~ 79 (310)
|+=...+|.-+.++-.|-|-+-.|.+.+.-|.+ | ++..+..+...++..--|-.+.+-+ +++.++.
T Consensus 149 iSRvgVIGVTlMAvLSGFGAVN~PYsyms~FiR-~---Vee~di~~lErrL~qtmdmiisKKkk~a~~~l~~~~l~~e~~ 224 (462)
T KOG2417|consen 149 ISRVGVIGVTLMAVLSGFGAVNAPYSYMSYFIR-P---VEETDIIQLERRLAQTMDMIISKKKKMAMAQLEEKRLQSEKV 224 (462)
T ss_pred HhhhhhhhhhHHHHHhccCccCCchhhhhhhhc-c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhc
Confidence 444567889999999999999999999988876 4 6665554422222222222211111 1111111
Q ss_pred cCCCC---------------hhhhHHHHHHHHHHHHHHHHHHH--HHhh--cccCccchhhhhhHHHHHHHHHHHHHHHH
Q 021594 80 SGSKG---------------RKWRKNVKSVEKELLQLEEDVKL--LEEM--YPQGEKAETSWALTVLGYLAKLVLGILGF 140 (310)
Q Consensus 80 ~g~~~---------------~k~rr~l~~l~~~~~~Le~~~~~--le~~--y~~~~~~~~~~~~~vl~~~~kLl~Gii~l 140 (310)
+.+.| +.-..+++.+|+|+.-||+=.|+ ||.+ ++-.|..++++ +--.-|+-+++=++++
T Consensus 225 ~k~pSff~r~w~~~~~~~~~~~~~~~i~~lq~EV~~LEeLsrqLFLE~~eLr~~ker~~~Sk--TfkG~yfN~LG~ffSi 302 (462)
T KOG2417|consen 225 QKEPSFFRRFWGMFSSSVQDNTLSSDIKLLQQEVEPLEELSRQLFLELVELRQMKERVAFSK--TFKGKYFNVLGHFFSI 302 (462)
T ss_pred ccCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHhhHhhhhHhHH
Confidence 11111 11123677888898888885554 2322 11122122211 1112233333332222
Q ss_pred HHHHHHHHHHHHHHh--cC----CCCCC----hhHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhee
Q 021594 141 IVSVAWVAHIVIYLL--IN----PPLHP----FLNEVFIKLDD-LWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFIT 209 (310)
Q Consensus 141 llSi~w~i~iil~~i--~~----~~~~~----~LN~~fi~l~~-~fpl~~~i~~~~~~~Yll~csi~G~~~~GiRf~~~~ 209 (310)
=..|=+-|-+-++ |+ .|+.- .+|++=+.+|- .|. -|+.|-+ +--+...|+-|.-.=-.. +.
T Consensus 303 --YCvwKif~s~inIvFdrvGk~DPVTr~IeI~v~~~gi~~Dv~fws--QyISf~l-VG~i~vtSvRGll~tltk---f~ 374 (462)
T KOG2417|consen 303 --YCVWKIFMSLINIVFDRVGKVDPVTRGIEITVNYLGIDFDVSFWS--QYISFFL-VGVIAVTSVRGLLITLTK---FF 374 (462)
T ss_pred --HHHHHHHHHHHHHHhhhccCcCCccceeEEEEEEecccchHHHHH--HHHHHHh-hheeEEeehhhhhhhhhh---hh
Confidence 1233332222222 22 23322 33444344442 222 2333221 111223334443221111 11
Q ss_pred eeecccCCCchhhHHHHHHHHHHHHHHHHHHhhhhhHhhHHHhHHHHHHHHHhcccccceeeeehhhHHHHHHHHHHHHH
Q 021594 210 IHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTF 289 (310)
Q Consensus 210 i~pmr~~~T~~nslLfn~~Llll~s~av~qFc~~~f~~ya~~t~i~~~f~~~~~nl~~~~~~~~~nv~~y~~l~~~~l~~ 289 (310)
.+.-.-+...--.++..-.+=|-+..++...|-..+++|- |-+...+| ++.+-.| -+| |.-.|++=++.+.
T Consensus 375 y~~~~s~ssn~ivl~l~qimgmyf~ssvllirms~p~Eyr--~iit~VlG----dlqfnfy-hRw--fdviFl~Sa~~si 445 (462)
T KOG2417|consen 375 YSISSSKSSNIIVLFLAQIMGMYFVSSVLLIRMSMPAEYR--TIITEVLG----DLQFNFY-HRW--FDVIFLVSALSSI 445 (462)
T ss_pred heecccccccchHHHHHHHHHHHHHHHHHHHhhcChHHHH--HHHHHHhh----hhcchhH-HHH--HHHHHHHHHHHHH
Confidence 2222333444445666666777788888888888888874 34444444 3344333 355 6555665555555
Q ss_pred HHHH
Q 021594 290 VYYA 293 (310)
Q Consensus 290 i~~l 293 (310)
+.+-
T Consensus 446 ~~L~ 449 (462)
T KOG2417|consen 446 LFLY 449 (462)
T ss_pred HHHH
Confidence 5443
No 67
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=45.06 E-value=2.2e+02 Score=25.07 Aligned_cols=23 Identities=13% Similarity=0.507 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021594 125 TVLGYLAKLVLGILGFIVSVAWV 147 (310)
Q Consensus 125 ~vl~~~~kLl~Gii~lllSi~w~ 147 (310)
..+++.+-.++|++.++++++.+
T Consensus 153 ~~lr~~~g~i~~~~a~~la~~r~ 175 (177)
T PF07798_consen 153 DTLRWLVGVIFGCVALVLAILRL 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788777777777777777654
No 68
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=44.85 E-value=1.4e+02 Score=24.14 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=30.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHH-HHHHHHHh----hhc--CCCChhhhHHHHHH
Q 021594 48 ITRSQYIKEATELGKKARELKK-AADTLHQE----ERS--GSKGRKWRKNVKSV 94 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle-~~~~lq~~----~~~--g~~~~k~rr~l~~l 94 (310)
+.+.++.+-+.+|..|..++-. +.++-+++ .+. ..+|.++|++.+.-
T Consensus 18 v~~k~~~dy~~Ei~KR~~~m~~~~~k~f~~~~~~~~~kn~~~ms~~e~~k~~~e 71 (93)
T PF06518_consen 18 VDPKDVPDYKMEIHKRLKKMKEKEAKDFKKQFKEAARKNLSKMSVEERKKRREE 71 (93)
T ss_dssp S-GGGHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 6777899999999999998877 55555542 222 47788887766543
No 69
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.84 E-value=1e+02 Score=31.05 Aligned_cols=61 Identities=25% Similarity=0.396 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhcCCCChhhhH-------HHHHHHHHHHHHHHHHHHHHhh
Q 021594 51 SQYIKEATELGKKARELKKAADTLHQE-------ERSGSKGRKWRK-------NVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 51 ~e~~~~~~~i~~~a~~Lle~~~~lq~~-------~~~g~~~~k~rr-------~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+++.++.+++.++.+++.++-+++++. ...+....+.+. ...++.++...|+++...+++.
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555455555555555555554442 112223333333 3345555555555555555544
No 70
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.71 E-value=1.1e+02 Score=28.75 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 51 SQYIKEATELGKKARELKKAADTLH 75 (310)
Q Consensus 51 ~e~~~~~~~i~~~a~~Lle~~~~lq 75 (310)
.+.+++..++..+.+++.+...++.
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~ 155 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELL 155 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444444433
No 71
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=44.26 E-value=2.5e+02 Score=25.77 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=39.9
Q ss_pred hhhhhhHHHHhhcccCCccccChHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHH
Q 021594 28 GIACLPLGLIFSFIRRPKAVITRSQY-IKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVK 106 (310)
Q Consensus 28 GlaalPi~lI~~f~~Rpk~~is~~e~-~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~ 106 (310)
|+-+++++-+....+-+. -++|- ++||...+.-++.+.|--.-+|=|.. =.-+-+.++++|++.++|+..
T Consensus 21 ~m~~~aL~IL~~AmsstT---GA~~~~K~EKaAyga~aEAlrDd~~~R~IK~~------vne~~L~~L~~el~~~kRk~~ 91 (195)
T PF01616_consen 21 GMKSVALGILDNAMSSTT---GATEAQKNEKAAYGAAAEALRDDERTRQIKVH------VNEQILPKLKHELRKLKRKRR 91 (195)
T ss_pred CchhhhHHHHHHhccCCc---cCchhhhHHHHHHHHHHHHHcCcHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHH
Confidence 667788888888877663 23333 44777777777777663322222211 012345566666666655443
Q ss_pred H
Q 021594 107 L 107 (310)
Q Consensus 107 ~ 107 (310)
.
T Consensus 92 i 92 (195)
T PF01616_consen 92 I 92 (195)
T ss_pred H
Confidence 3
No 72
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=44.13 E-value=75 Score=33.81 Aligned_cols=8 Identities=13% Similarity=0.169 Sum_probs=4.2
Q ss_pred Hhhhhhhh
Q 021594 170 KLDDLWGL 177 (310)
Q Consensus 170 ~l~~~fpl 177 (310)
.+.+.||+
T Consensus 191 sltSgfPV 198 (907)
T KOG2264|consen 191 SLTSGFPV 198 (907)
T ss_pred cccCCcee
Confidence 34455665
No 73
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.02 E-value=92 Score=32.20 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021594 53 YIKEATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 53 ~~~~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
+..+-+++.++.++++++|+.++++
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~e 88 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAE 88 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777653
No 74
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=43.90 E-value=1.2e+02 Score=25.29 Aligned_cols=11 Identities=9% Similarity=0.051 Sum_probs=6.1
Q ss_pred hhHHHHHHHHH
Q 021594 123 ALTVLGYLAKL 133 (310)
Q Consensus 123 ~~~vl~~~~kL 133 (310)
+...+++|+..
T Consensus 95 iP~~l~~yl~~ 105 (109)
T PF11690_consen 95 IPDMLRMYLRA 105 (109)
T ss_pred ccHHHHHHHHH
Confidence 33566666654
No 75
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=43.54 E-value=2.9e+02 Score=26.09 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEEMYP 113 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~y~ 113 (310)
...+.+++++|...++++...+...+.
T Consensus 140 ~~~~i~~l~~~~~~~~~~~~~~~~~~~ 166 (301)
T PF14362_consen 140 LDAEIAALQAEIDQLEKEIDRAQQEAQ 166 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777788877777777665543
No 76
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=43.04 E-value=1.2e+02 Score=30.39 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 54 IKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 54 ~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
.+....+.++.+++.++.++++++..+.. |.+++++.++++...++++..++++-
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~---k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP---KKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc---chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555432222 77788888999999999988887764
No 77
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=42.80 E-value=3.8e+02 Score=27.21 Aligned_cols=12 Identities=0% Similarity=0.122 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 021594 90 NVKSVEKELLQL 101 (310)
Q Consensus 90 ~l~~l~~~~~~L 101 (310)
+.+++++..+.+
T Consensus 205 ~~~~~~~~~~~~ 216 (529)
T TIGR02857 205 QAAAIARSSEEY 216 (529)
T ss_pred HHHHHHHHHHHH
Confidence 334444433333
No 78
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=42.26 E-value=1.2e+02 Score=25.31 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHH
Q 021594 63 KARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLE 102 (310)
Q Consensus 63 ~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le 102 (310)
|..-|-..-++++..+...+.-...+.+++..++++...+
T Consensus 44 rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere 83 (115)
T PF06476_consen 44 RVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAERE 83 (115)
T ss_pred HHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHH
Confidence 3444444445555544444443333344444444443333
No 79
>PRK10780 periplasmic chaperone; Provisional
Probab=41.28 E-value=2.4e+02 Score=24.44 Aligned_cols=9 Identities=11% Similarity=-0.067 Sum_probs=4.4
Q ss_pred CCCChhhhH
Q 021594 81 GSKGRKWRK 89 (310)
Q Consensus 81 g~~~~k~rr 89 (310)
+.+|...|+
T Consensus 78 ~~ms~~~~~ 86 (165)
T PRK10780 78 STMKGSDRT 86 (165)
T ss_pred cccCHHHHH
Confidence 355554443
No 80
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.20 E-value=83 Score=32.49 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021594 52 QYIKEATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 52 e~~~~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
|..++...+.++=++|+++++++++.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666677788888887763
No 81
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=40.83 E-value=1.2e+02 Score=28.51 Aligned_cols=27 Identities=19% Similarity=0.280 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 85 RKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
-++-+++++|.+|+.+++++...|+..
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~e 111 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLEDE 111 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777776666554
No 82
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=40.75 E-value=33 Score=34.48 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021594 52 QYIKEATELGKKARELKKAADTL 74 (310)
Q Consensus 52 e~~~~~~~i~~~a~~Lle~~~~l 74 (310)
+..+++.+.+++.++.+++-++.
T Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~ 222 (471)
T PF04791_consen 200 KLEDEAAEAKEKLDDIIEKLRRL 222 (471)
T ss_pred hhcchhHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444
No 83
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=40.69 E-value=1.8e+02 Score=25.92 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----cC--CCChhhhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 021594 55 KEATELGKKARELKKAADTLHQEER----SG--SKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQG 115 (310)
Q Consensus 55 ~~~~~i~~~a~~Lle~~~~lq~~~~----~g--~~~~k~rr~l~~l~~~~~~Le~~~~~le~~y~~~ 115 (310)
+....+.++-+++.++-+++++..+ .. ..=-+.|||++.+...+..||.+...+|..|...
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3445555555666666666665322 11 1123689999999999999999999988876654
No 84
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=40.47 E-value=2e+02 Score=23.35 Aligned_cols=35 Identities=6% Similarity=0.032 Sum_probs=22.9
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 021594 82 SKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (310)
Q Consensus 82 ~~~~k~rr~l~~l~~~~~~Le~~~~~le~~y~~~~ 116 (310)
..+..+|..++++++....+.....++......++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 136 (181)
T PF12729_consen 102 ILSPEEKQLLEEFKEAWKAYRKLRDQVIELAKSGD 136 (181)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 44556777888888888777776666555444443
No 85
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.85 E-value=40 Score=32.69 Aligned_cols=17 Identities=24% Similarity=0.381 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021594 186 FCFYLLLAVIAGAMMLG 202 (310)
Q Consensus 186 ~~~Yll~csi~G~~~~G 202 (310)
|-.|+.=+.+.....+|
T Consensus 203 FF~y~~q~~~~v~qAvg 219 (313)
T KOG3088|consen 203 FFTYFFQIVFCVFQAVG 219 (313)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 33444444444455555
No 86
>KOG0380 consensus Sterol O-acyltransferase/Diacylglycerol O-acyltransferase [Lipid transport and metabolism]
Probab=39.77 E-value=4.7e+02 Score=27.50 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=61.7
Q ss_pred HhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhhhhhHHHHHHHHHHH
Q 021594 109 EEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEVFIKLDDLWGLLGTAAFAFFCF 188 (310)
Q Consensus 109 e~~y~~~~~~~~~~~~~vl~~~~kLl~Gii~lllSi~w~i~iil~~i~~~~~~~~LN~~fi~l~~~fpl~~~i~~~~~~~ 188 (310)
+.+|++.....+. .++...+++++++.+..+-.=+|++=.+.+..+++.....=-+...+...+| + ++.-++.|
T Consensus 294 q~~yPRt~~iR~~---yvl~k~~e~~g~~~l~~~i~~q~~vP~~~n~~~~~~~~~~~~~~~ll~l~iP--~-il~~Ll~F 367 (523)
T KOG0380|consen 294 QLSYPRTARIRWR---YVLEKFLELLGCIFLMVFIFQQWMVPVARNSKDPPFSDASRLIERLLKLMIP--G-ILIWLLFF 367 (523)
T ss_pred cccCCccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccchHHHHHHHHHHHhhh--H-HHHHHHHH
Confidence 4456766654333 6777889999999999999999999999999887655233334445556788 4 44445556
Q ss_pred HHHHH----HHHHHHHHhhHhh
Q 021594 189 YLLLA----VIAGAMMLGLRLV 206 (310)
Q Consensus 189 Yll~c----si~G~~~~GiRf~ 206 (310)
|+++= +++=..++|=|-+
T Consensus 368 Y~ifh~~LNa~AEl~rFaDR~F 389 (523)
T KOG0380|consen 368 YLIFHCWLNAVAELTRFADREF 389 (523)
T ss_pred HHHHHHHHHHHHHHHHhhHHhH
Confidence 66553 3455667777665
No 87
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.68 E-value=1.4e+02 Score=29.65 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 51 SQYIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 51 ~e~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
+-.......+.+|++|-+|.....|+
T Consensus 210 svisa~~eklR~r~eeeme~~~aeq~ 235 (365)
T KOG2391|consen 210 SVISAVREKLRRRREEEMERLQAEQE 235 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666666666655554
No 88
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=38.73 E-value=4.5e+02 Score=26.96 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 021594 8 YVVALATIVGSVLFSIFG 25 (310)
Q Consensus 8 f~i~~l~~iG~~lfv~y~ 25 (310)
.+.+++++++.++..++-
T Consensus 146 ~~~~~~~~~~~~~~l~~~ 163 (582)
T PRK11176 146 VVREGASIIGLFIMMFYY 163 (582)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 89
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=38.61 E-value=1.7e+02 Score=22.12 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 021594 59 ELGKKARELKKAADTLHQE 77 (310)
Q Consensus 59 ~i~~~a~~Lle~~~~lq~~ 77 (310)
.++.|.++|++..++++++
T Consensus 4 ~Le~kle~Li~~~~~L~~E 22 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSE 22 (65)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777664
No 90
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.39 E-value=1.3e+02 Score=27.83 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC-CCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 56 EATELGKKARELKKAADTLHQEERSG-SKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~~~~g-~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+.+++.+..++|.+..+.++++...- ...++-.+.++..+++...|+++.+.++..
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444432111 112223344555555555555555555554
No 91
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=38.34 E-value=1.8e+02 Score=28.22 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=3.1
Q ss_pred HhhHhhheeeee
Q 021594 201 LGLRLVFITIHP 212 (310)
Q Consensus 201 ~GiRf~~~~i~p 212 (310)
+|+.|-=.++.|
T Consensus 189 l~~~f~~y~l~P 200 (314)
T PF04111_consen 189 LNFKFQRYRLVP 200 (314)
T ss_dssp CT---SSEEEE-
T ss_pred hCCCcccceeEe
Confidence 343333334444
No 92
>PHA02132 hypothetical protein
Probab=38.23 E-value=40 Score=26.08 Aligned_cols=30 Identities=17% Similarity=0.472 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHH--HHHHhccccCCCCCcc
Q 021594 277 FQIAFVVLAGLTFV--YYAAFGWRRRKPSGKF 306 (310)
Q Consensus 277 ~~y~~l~~~~l~~i--~~l~~~~~~~~~~~~~ 306 (310)
-||...++.+-+++ +.++-.||++||.++.
T Consensus 12 vqys~ia~~vyvl~hg~affdewr~~~pdsk~ 43 (86)
T PHA02132 12 VQYSIIAVMVYVLIHGFAFFDEWRQKRPDSKM 43 (86)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHcCCCCccC
Confidence 46766666666666 5677789999998753
No 93
>PRK11546 zraP zinc resistance protein; Provisional
Probab=38.20 E-value=2.1e+02 Score=24.88 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=28.2
Q ss_pred cChHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhc-CCCChhhhHHHHHHHHHHHHHHHHHH
Q 021594 48 ITRSQYIKEATELGK---KARELKKAADTLHQEERS-GSKGRKWRKNVKSVEKELLQLEEDVK 106 (310)
Q Consensus 48 is~~e~~~~~~~i~~---~a~~Lle~~~~lq~~~~~-g~~~~k~rr~l~~l~~~~~~Le~~~~ 106 (310)
+|.++-++..+..++ +..+|.++-..-+.+.+. -..+.-|..+++++.+|...|+....
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 666665554333333 334444333332222211 12233366677777777777765433
No 94
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=38.16 E-value=6.1e+02 Score=29.98 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hhhhhhhHHHHhhccc
Q 021594 5 FPEYVVALATIVGSVLFSIFGG-----VGIACLPLGLIFSFIR 42 (310)
Q Consensus 5 f~~f~i~~l~~iG~~lfv~y~g-----vGlaalPi~lI~~f~~ 42 (310)
+..++.++.+++|.+.+.++-+ +-++.+|+-++-....
T Consensus 175 ~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~ 217 (1466)
T PTZ00265 175 FITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVIC 217 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666665544 4555667766666544
No 95
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=37.81 E-value=2.3e+02 Score=23.39 Aligned_cols=52 Identities=17% Similarity=0.397 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhhhh-------------hhhhHHHHhhcccCC--ccccChHHHHHHHHHHHHHHHHHH
Q 021594 13 ATIVGSVLFSIFGGVGI-------------ACLPLGLIFSFIRRP--KAVITRSQYIKEATELGKKARELK 68 (310)
Q Consensus 13 l~~iG~~lfv~y~gvGl-------------aalPi~lI~~f~~Rp--k~~is~~e~~~~~~~i~~~a~~Ll 68 (310)
+..+|-++|..+-..|+ +..=+.++-+|..|- +. +| |.++.++..+..+++-
T Consensus 13 v~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlfRV~t~~-MT---y~~Q~k~Ye~a~~~~~ 79 (104)
T PF11460_consen 13 VFLLGGLLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLFRVVTGK-MT---YMQQRKDYEEAVDQLT 79 (104)
T ss_pred HHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHhhhccCC-Cc---HHHHHHHHHHHHHHHh
Confidence 44567777877777775 223378888888876 23 44 6666655555544443
No 96
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=37.66 E-value=1.3e+02 Score=29.81 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021594 56 EATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~ 76 (310)
.-..+.++..+|-++.+++++
T Consensus 292 ~s~~V~~~t~~L~~IseeLe~ 312 (359)
T PF10498_consen 292 ASEGVSERTRELAEISEELEQ 312 (359)
T ss_pred HhhHHHHHHHHHHHHHHHHHH
Confidence 333444445455455544443
No 97
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=37.63 E-value=33 Score=30.49 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCC
Q 021594 277 FQIAFVVLAGLTFVYYAAFGWRRRK 301 (310)
Q Consensus 277 ~~y~~l~~~~l~~i~~l~~~~~~~~ 301 (310)
..|++.|++.+..+|+.+|.+|-+|
T Consensus 97 ~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 97 ALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5699999999999999887766554
No 98
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=37.54 E-value=89 Score=27.26 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 021594 87 WRKNVKSVEKELLQLEEDVKL 107 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~ 107 (310)
...++++|++++++=|+.-+.
T Consensus 129 ~~~eL~qLq~rL~qTE~~m~k 149 (152)
T PF15361_consen 129 TDYELAQLQERLAQTERAMEK 149 (152)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345677777666655554433
No 99
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=37.11 E-value=2.3e+02 Score=25.38 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 021594 89 KNVKSVEKELLQLEEDVKLLEEMY 112 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~~y 112 (310)
++.+.++.+...|+.+.+..++.|
T Consensus 144 ~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 144 SKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555543
No 100
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=36.45 E-value=95 Score=29.28 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 021594 58 TELGKKARELKKAADTLHQEERS 80 (310)
Q Consensus 58 ~~i~~~a~~Lle~~~~lq~~~~~ 80 (310)
.+..+.-++|++...++|.++.+
T Consensus 145 ~E~~~EkeeL~~eleele~e~ee 167 (290)
T COG4026 145 EELQKEKEELLKELEELEAEYEE 167 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566666666655443
No 101
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=36.39 E-value=93 Score=30.00 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHH
Q 021594 56 EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELL 99 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~ 99 (310)
-+.++..=.+++.|..+-++++|++-.-+.+|..++++++++++
T Consensus 242 ~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~~~~ 285 (299)
T PF03715_consen 242 FKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFESELK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHhcc
Confidence 44455555666666777777777665778889988888877654
No 102
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=36.38 E-value=1.9e+02 Score=23.48 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 021594 88 RKNVKSVEKELLQLEEDVKL 107 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~ 107 (310)
|.-+.+.++++..++.+.+.
T Consensus 59 r~~~~~~~~~~qq~r~~~e~ 78 (110)
T PF10828_consen 59 RQAVEEQQKREQQLRQQSEE 78 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 103
>PRK01622 OxaA-like protein precursor; Validated
Probab=36.10 E-value=2e+02 Score=27.05 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 021594 61 GKKARELKKAADTLHQEE 78 (310)
Q Consensus 61 ~~~a~~Lle~~~~lq~~~ 78 (310)
.+|-+++.-+-+++|+++
T Consensus 90 ~~km~~iqP~l~~iq~ky 107 (256)
T PRK01622 90 QEKMAVMKPELDKIQAKL 107 (256)
T ss_pred HHHHHHhCHHHHHHHHHH
Confidence 344455666677777776
No 104
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=35.91 E-value=1.3e+02 Score=30.53 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021594 88 RKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~~y~~ 114 (310)
-+.++.++.+...||+++.+||.+|+.
T Consensus 258 e~~lq~lEt~q~~leqeva~le~yyQ~ 284 (499)
T COG4372 258 ERQLQRLETAQARLEQEVAQLEAYYQA 284 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999764
No 105
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=35.53 E-value=3.1e+02 Score=27.64 Aligned_cols=25 Identities=4% Similarity=0.077 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 86 KWRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
....++.+++|+....++.++.+..
T Consensus 352 ~~~~el~~L~Re~~~~~~~Y~~l~~ 376 (498)
T TIGR03007 352 EVEAELTQLNRDYEVNKSNYEQLLT 376 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666555554444333
No 106
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=35.20 E-value=1.6e+02 Score=28.00 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh------cC--CCChhhhHHHHHHHHHHHHHHHHHHH
Q 021594 54 IKEATELGKKARELKKAADTLHQEER------SG--SKGRKWRKNVKSVEKELLQLEEDVKL 107 (310)
Q Consensus 54 ~~~~~~i~~~a~~Lle~~~~lq~~~~------~g--~~~~k~rr~l~~l~~~~~~Le~~~~~ 107 (310)
+++..++....++|.|.++.+|.+.. .| .+..+-+.++..+++++-.+...+..
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44666777777888888888876432 22 34556677788888888887766544
No 107
>PRK14127 cell division protein GpsB; Provisional
Probab=35.00 E-value=1.9e+02 Score=24.03 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=28.8
Q ss_pred hhHHHHh-hcccCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 32 LPLGLIF-SFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 32 lPi~lI~-~f~~Rpk~~is~~e~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
-|.|... .|..+-+- .+.+|..+-..++.+.-+.+.+++.++++
T Consensus 7 Tp~DI~~KeF~~~~RG-Yd~~EVD~FLd~V~~dye~l~~e~~~Lk~ 51 (109)
T PRK14127 7 TPKDILEKEFKTSMRG-YDQDEVDKFLDDVIKDYEAFQKEIEELQQ 51 (109)
T ss_pred CHHHHhhCccCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666543 34333344 78888888777777777777777766655
No 108
>PF10944 DUF2630: Protein of unknown function (DUF2630); InterPro: IPR020311 This entry contains proteins with no known function.
Probab=34.97 E-value=1.7e+02 Score=23.20 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC-CChhhhHHHHHHHHHHHHHHH--HHHHHHhh
Q 021594 58 TELGKKARELKKAADTLHQEERSGS-KGRKWRKNVKSVEKELLQLEE--DVKLLEEM 111 (310)
Q Consensus 58 ~~i~~~a~~Lle~~~~lq~~~~~g~-~~~k~rr~l~~l~~~~~~Le~--~~~~le~~ 111 (310)
+.|-.+.++|.++-+++..+...|. .+..++..++.++.++-+.=. ++|++...
T Consensus 4 ~~Il~rI~~LV~EE~~LR~~~~~g~~~~~~e~~RL~~lE~~LDQCWDLLRqRRA~r~ 60 (81)
T PF10944_consen 4 QDILARINELVAEEHELRSRLQAGEIDSDEEHARLRQLEVELDQCWDLLRQRRARRE 60 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566778899999999998766664 455677788887777765322 34444444
No 109
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=34.95 E-value=2.2e+02 Score=22.13 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=26.8
Q ss_pred hhHHHHhhcccCCcc--ccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 32 LPLGLIFSFIRRPKA--VITRSQYIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 32 lPi~lI~~f~~Rpk~--~is~~e~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
.|+-++.-|++|.|. -.|.++ .+.-+++.++|++|-|..+.+++
T Consensus 18 ap~WL~lHY~sk~~~~~gLs~~d-~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 18 APIWLILHYRSKWKSSQGLSEED-EQRLQELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHhcccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999987642 133222 22345566666666666666665
No 110
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=34.92 E-value=84 Score=33.42 Aligned_cols=13 Identities=46% Similarity=0.488 Sum_probs=8.1
Q ss_pred HHHHhhcccCCcc
Q 021594 34 LGLIFSFIRRPKA 46 (310)
Q Consensus 34 i~lI~~f~~Rpk~ 46 (310)
+++|++.++|+|.
T Consensus 486 LslIrDIRRRgKN 498 (604)
T KOG3863|consen 486 LSLIRDIRRRGKN 498 (604)
T ss_pred HHHhhcccccccc
Confidence 4566666666655
No 111
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=34.58 E-value=94 Score=32.74 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 021594 90 NVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~ 111 (310)
|-+.|++|--+|+++...++..
T Consensus 317 Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 317 ENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHhhhHHHHHHHHHHhhc
Confidence 4446666666666666666554
No 112
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=34.56 E-value=50 Score=23.38 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 021594 92 KSVEKELLQLEEDVKLLEEMYPQ 114 (310)
Q Consensus 92 ~~l~~~~~~Le~~~~~le~~y~~ 114 (310)
+.|++++..|+.+.+.|+.++.+
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888877443
No 113
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=34.46 E-value=1.4e+02 Score=30.52 Aligned_cols=56 Identities=14% Similarity=0.326 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC---CCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 56 EATELGKKARELKKAADTLHQEERSG---SKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~~~~g---~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
...-+++|.++|.++.++.+++-.+. ......+++.+.++++...|+++.+.++..
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 222 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENM 222 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567778888888888888754332 233444555555555555555555555544
No 114
>PHA03048 IMV membrane protein; Provisional
Probab=33.63 E-value=45 Score=26.86 Aligned_cols=23 Identities=17% Similarity=0.548 Sum_probs=18.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Q 021594 3 TTFPEYVVALATIVGSVLFSIFG 25 (310)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfv~y~ 25 (310)
.|...|++|.+.++|.++|.-|+
T Consensus 46 lsii~FIlgivl~lG~~ifsmy~ 68 (93)
T PHA03048 46 LSGIAFVLGIVMTIGMLIYSMWG 68 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999998776554
No 115
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=32.87 E-value=5.5e+02 Score=26.24 Aligned_cols=17 Identities=6% Similarity=0.221 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021594 9 VVALATIVGSVLFSIFG 25 (310)
Q Consensus 9 ~i~~l~~iG~~lfv~y~ 25 (310)
+.++..++|.++++++-
T Consensus 140 ~~~~~~~~~~~~~~~~~ 156 (576)
T TIGR02204 140 LRNALMCIGGLIMMFIT 156 (576)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 116
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=32.86 E-value=1.6e+02 Score=28.70 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 021594 51 SQYIKEATELGKKARELKKAADTLHQEERS 80 (310)
Q Consensus 51 ~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~ 80 (310)
+++++.+.+++.++.++.+..+++.+++++
T Consensus 37 ~~~~ekRdeln~kvrE~~e~~~elr~~rde 66 (294)
T COG1340 37 SELAEKRDELNAKVRELREKAQELREERDE 66 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777765543
No 117
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=32.83 E-value=1.5e+02 Score=29.34 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=16.2
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 021594 84 GRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (310)
Q Consensus 84 ~~k~rr~l~~l~~~~~~Le~~~~~le~~y~~~~ 116 (310)
+.+++...++++++...-+....+.|..-++..
T Consensus 63 ~~e~~~~i~~L~~~Ik~r~~~l~DmEa~LPkkN 95 (330)
T PF07851_consen 63 SAEERELIEKLEEDIKERRCQLFDMEAFLPKKN 95 (330)
T ss_pred ChhHHHHHHHHHHHHHHHHhhHHHHHhhCCCCC
Confidence 334555555555555554444555554334433
No 118
>PRK09458 pspB phage shock protein B; Provisional
Probab=32.68 E-value=2.4e+02 Score=21.99 Aligned_cols=52 Identities=15% Similarity=0.338 Sum_probs=31.5
Q ss_pred HHHHHHHhhhhhhhhhHHHHhhcccCCcc--ccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 18 SVLFSIFGGVGIACLPLGLIFSFIRRPKA--VITRSQYIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 18 ~~lfv~y~gvGlaalPi~lI~~f~~Rpk~--~is~~e~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
.++|++|. .|+=|+.-|.++-|. .+|.+|.. .-.++.++|+++-|..+.+++
T Consensus 10 liiF~ifV------aPiWL~LHY~sk~~~~~~Ls~~d~~-~L~~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 10 LTIFVLFV------APIWLWLHYRSKRQGSQGLSQEEQQ-RLAQLTEKAERMRERIQALEA 63 (75)
T ss_pred HHHHHHHH------HHHHHHHhhcccccCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34555553 599999999985542 13333321 344566677777777777665
No 119
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=32.63 E-value=1.9e+02 Score=31.16 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHH
Q 021594 51 SQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEED 104 (310)
Q Consensus 51 ~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~ 104 (310)
+++....++-++..+.+.+..+++++. ...++++++.++..||++
T Consensus 4 dkL~~Lq~ek~~E~~~l~~~~~~lk~~---------~~~el~~Lk~~vqkLEDE 48 (654)
T PF09798_consen 4 DKLELLQQEKQKERQALKSSVEELKES---------HEEELNKLKSEVQKLEDE 48 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHH
Confidence 444444444344444444444444432 334444444444444443
No 120
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.59 E-value=4e+02 Score=24.58 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=38.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCh----hhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGR----KWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~----k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
++.....++-.+.+.|.+.+.++-+++++.-++.. +- +-.+++.+.+.+.+.++.+.+.++..
T Consensus 125 ~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 125 ISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555566666666666666655322222 22 23467777888888888877777765
No 121
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.85 E-value=1.5e+02 Score=32.78 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021594 53 YIKEATELGKKARELKKAADTLH 75 (310)
Q Consensus 53 ~~~~~~~i~~~a~~Lle~~~~lq 75 (310)
|..-..++.+|=+.|.|+-+.-+
T Consensus 322 y~kGqaELerRRq~leeqqqrer 344 (1118)
T KOG1029|consen 322 YEKGQAELERRRQALEEQQQRER 344 (1118)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHH
Confidence 34445566677666766654433
No 122
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=31.84 E-value=51 Score=26.60 Aligned_cols=23 Identities=22% Similarity=0.615 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Q 021594 3 TTFPEYVVALATIVGSVLFSIFG 25 (310)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfv~y~ 25 (310)
.|..-|++|+..++|.++|..|+
T Consensus 47 lSii~FI~giil~lG~~i~s~yg 69 (92)
T PF05767_consen 47 LSIICFILGIILTLGIVIFSMYG 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778999999999998877664
No 123
>PRK09546 zntB zinc transporter; Reviewed
Probab=31.74 E-value=1.2e+02 Score=29.12 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhHHHhHHHHHHHHHhcccccceeeeeh
Q 021594 226 NVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKY 274 (310)
Q Consensus 226 n~~Llll~s~av~qFc~~~f~~ya~~t~i~~~f~~~~~nl~~~~~~~~~ 274 (310)
|-.+=.++.++++-. .-|-+..++|--+.++|+.++=+-|
T Consensus 261 N~~m~~Ltilt~Ifl---------PlT~IaGiyGMNf~~mPel~~~~gy 300 (324)
T PRK09546 261 NRRTYTMSLMAMVFL---------PTTFLTGLFGVNLGGIPGGGWPFGF 300 (324)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHhhhccccCCCCCcCCcchH
Confidence 666666666665433 5588999999999999999875544
No 124
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=31.68 E-value=2e+02 Score=24.65 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=39.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSG-SKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g-~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
.+-+...+.+..+.+.....++....+|++.++- ..-.+|...++.|++..+.++++.++.++.
T Consensus 20 ~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 20 FDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566667777777776677777777643321 122346667777777777777766665554
No 125
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=31.64 E-value=2.3e+02 Score=21.78 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 021594 88 RKNVKSVEKELLQLEEDVKLL 108 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~l 108 (310)
..+.+++.+++..+|++++--
T Consensus 11 ~~d~~~i~~rLd~iEeKVEf~ 31 (70)
T TIGR01149 11 PDEFNEVMKRLDEIEEKVEFV 31 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555443
No 126
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.62 E-value=2.3e+02 Score=24.99 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
...|++++++|+..-+.+.+.+.+.
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666555553
No 127
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=31.57 E-value=2.9e+02 Score=23.03 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 88 RKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
|++.+.++.++..||++++.|+.-
T Consensus 82 ~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 82 QSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788888888877763
No 128
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=31.33 E-value=5.8e+02 Score=25.98 Aligned_cols=34 Identities=9% Similarity=0.196 Sum_probs=21.7
Q ss_pred eeeeecccCCCchhhHHHHHHHHHHHHHHHHHHhh
Q 021594 208 ITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCS 242 (310)
Q Consensus 208 ~~i~pmr~~~T~~nslLfn~~Llll~s~av~qFc~ 242 (310)
+++..++.++..+ +--.+..||+.+.++..-+|.
T Consensus 296 ~~~r~l~~~~~~~-~~~LD~iLL~va~~G~~ly~~ 329 (441)
T PF03189_consen 296 YRMRKLKFSSKNP-GRSLDVILLVVAAFGEFLYSY 329 (441)
T ss_pred HHhhhccccccCc-cccHhHHHHHHHHHHHHHHHH
Confidence 3455555534444 456788888888888777665
No 129
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.16 E-value=2.5e+02 Score=21.75 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 021594 62 KKARELKKAADTLHQ 76 (310)
Q Consensus 62 ~~a~~Lle~~~~lq~ 76 (310)
...++|.|.+..+++
T Consensus 25 mEieELKEknn~l~~ 39 (79)
T COG3074 25 MEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHhhHhHH
Confidence 334445555544444
No 130
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=31.15 E-value=2.2e+02 Score=24.39 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=31.8
Q ss_pred cChHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCC-----hhhhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 48 ITRSQYIKEATELGKKA-RELKKAADTLHQEERSGSKG-----RKWRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a-~~Lle~~~~lq~~~~~g~~~-----~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
+|.+-|++.+.+++..- .+.-+..++++.-+..|-.+ .-.|++...++++.+.|+++...++.
T Consensus 2 ~T~~g~~~L~~el~~L~~~~r~~~~~~~~~a~~~gDl~Ena~y~aak~~~~~~e~ri~~L~~~L~~a~i 70 (151)
T TIGR01462 2 LTQEGYEKLKEELEYLKTVKRPEISEEIAEAREHGDLSENAEYHAAKEEQGFNEGRIAELEDLLANAQV 70 (151)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHCCChhhccchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 45555555555544332 23444455566555555322 12344555666666666666555444
No 131
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=30.65 E-value=2.3e+02 Score=21.17 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 021594 133 LVLGILGFIVSVA 145 (310)
Q Consensus 133 Ll~Gii~lllSi~ 145 (310)
+++|++..+++.+
T Consensus 57 iiGaiI~~i~~~i 69 (71)
T PF10779_consen 57 IIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555554443
No 132
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=30.56 E-value=2.6e+02 Score=21.78 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021594 131 AKLVLGILGFIVSVAWVA 148 (310)
Q Consensus 131 ~kLl~Gii~lllSi~w~i 148 (310)
..+.+|+.+++..++|++
T Consensus 71 ~li~~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 71 ILIFFAFLFFLLVVLYIL 88 (92)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345577888888888876
No 133
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=30.43 E-value=1.4e+02 Score=28.98 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021594 52 QYIKEATELGKKARELKKAADTLHQEER 79 (310)
Q Consensus 52 e~~~~~~~i~~~a~~Lle~~~~lq~~~~ 79 (310)
||.+.+.+++.++++|....+++.++..
T Consensus 73 elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 73 ELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677788888888888888888877544
No 134
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.20 E-value=1.2e+02 Score=25.23 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 021594 54 IKEATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 54 ~~~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
.++..++.+...+|+|+|.+++-+
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iE 44 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777777654
No 135
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.12 E-value=1.9e+02 Score=29.98 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 021594 86 KWRKNVKSVEKELLQLEEDVKL 107 (310)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~ 107 (310)
+..+++++++.|...|+.+.+.
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666777777777666643
No 136
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=29.97 E-value=2.1e+02 Score=27.82 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh--hhhHHHHhhcccCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 9 VVALATIVGSVLFSIFGGVGIA--CLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 9 ~i~~l~~iG~~lfv~y~gvGla--alPi~lI~~f~~Rpk~~is~~e~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
....+.+++++.++++...|+= ..|+.=--+.. +++ .|.+|+.+.. +.++|+..+++.
T Consensus 57 l~~~~~~~~~~y~~F~~~WGlNY~R~pl~~~l~l~--~~~-~~~~eL~~l~-------~~li~~~N~l~~ 116 (318)
T PF12725_consen 57 LLNILFFLSVLYFLFYLLWGLNYYRPPLSERLGLE--TEE-YSTEELKELT-------EYLIEKANELRE 116 (318)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCcCHHHHcCCC--CCC-CCHHHHHHHH-------HHHHHHHHHHHH
Confidence 4667777777777777777774 34443333322 223 5555555544 445666666655
No 137
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.69 E-value=2.3e+02 Score=27.53 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021594 89 KNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~ 110 (310)
++.+.++.+...++++...++.
T Consensus 99 ~~~n~~~~~l~~~~~e~~sl~~ 120 (314)
T PF04111_consen 99 REYNELQLELIEFQEERDSLKN 120 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333
No 138
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=29.54 E-value=3.7e+02 Score=23.41 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 021594 126 VLGYLAKLVLGILGFI 141 (310)
Q Consensus 126 vl~~~~kLl~Gii~ll 141 (310)
+-++ +-+++|++..+
T Consensus 153 lyr~-LGvl~G~~lvI 167 (170)
T PF09548_consen 153 LYRS-LGVLGGLFLVI 167 (170)
T ss_pred HHHH-HHHHHHHHHHH
Confidence 3344 55566655443
No 139
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=29.32 E-value=4.2e+02 Score=23.93 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=21.0
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 81 GSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 81 g~~~~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
+.+|..+|.|.++|+.=-..++.+..+||-
T Consensus 137 ~hMSeeER~EaeQLQsLR~avRqElqELE~ 166 (179)
T PF14723_consen 137 RHMSEEEREEAEQLQSLRSAVRQELQELEF 166 (179)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999998888766655555556666655
No 140
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=29.28 E-value=2e+02 Score=25.73 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 56 EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+-+=+..|++|+.+..++.+. ++++.+.+++++..+.++.+.+-+.
T Consensus 128 dLsPL~~R~~El~~~a~~~~~----------~~~~~r~lr~~it~~rR~i~~l~~~ 173 (177)
T PF03428_consen 128 DLSPLIARAEELAALAEAARA----------ERRALRRLRRRITLLRRDIRKLIEA 173 (177)
T ss_pred CHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777765 4567777777788887777776554
No 141
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=29.13 E-value=2.5e+02 Score=25.72 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021594 54 IKEATELGKKARELKKAAD 72 (310)
Q Consensus 54 ~~~~~~i~~~a~~Lle~~~ 72 (310)
.+.+..|.+|..+++|--+
T Consensus 104 ~~i~k~I~KR~~KllDYDr 122 (211)
T cd07588 104 PEVKKRIAKRGRKLVDYDS 122 (211)
T ss_pred HHHHHHHHHHhhHHHhHHH
Confidence 3344444444444444433
No 142
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=28.96 E-value=2.4e+02 Score=21.61 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=13.1
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021594 84 GRKWRKNVKSVEKELLQLEEDVKLLEEMYP 113 (310)
Q Consensus 84 ~~k~rr~l~~l~~~~~~Le~~~~~le~~y~ 113 (310)
|.++||.+++++ +.|.+|--++....+
T Consensus 4 Se~E~r~L~eiE---r~L~~~DP~fa~~l~ 30 (82)
T PF11239_consen 4 SEHEQRRLEEIE---RQLRADDPRFAARLR 30 (82)
T ss_pred CHHHHHHHHHHH---HHHHhcCcHHHHHhc
Confidence 555666555544 444444444444433
No 143
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=28.78 E-value=1.4e+02 Score=28.19 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhHHHhHHHHHHHHHhcccccceeeeeh
Q 021594 226 NVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKY 274 (310)
Q Consensus 226 n~~Llll~s~av~qFc~~~f~~ya~~t~i~~~f~~~~~nl~~~~~~~~~ 274 (310)
|-.|=.|++++++- +.-|.+..++|--+.++|+.++-|-|
T Consensus 255 N~~mk~LTvvt~If---------lP~t~IaGiyGMNf~~mP~l~~~~gy 294 (318)
T TIGR00383 255 NEIMKILTVVSTIF---------IPLTFIAGIYGMNFKFMPELNWKYGY 294 (318)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHhCCcccCccccchhHH
Confidence 44555566666553 34488899999999999998876555
No 144
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=28.71 E-value=1.4e+02 Score=29.32 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 86 KWRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
|-|+.+.+|+++..+++-+.-.+|.
T Consensus 339 kIkqavsKLk~et~~mnv~igv~eh 363 (384)
T KOG0972|consen 339 KIKQAVSKLKEETQTMNVQIGVFEH 363 (384)
T ss_pred HHHHHHHHHHHHHHhhhhheehhhH
Confidence 3455555555555555544444333
No 145
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=28.66 E-value=3.5e+02 Score=22.64 Aligned_cols=30 Identities=7% Similarity=0.111 Sum_probs=14.0
Q ss_pred CCChhhhH-HHHHHHHHHHHHHHHHHHHHhh
Q 021594 82 SKGRKWRK-NVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 82 ~~~~k~rr-~l~~l~~~~~~Le~~~~~le~~ 111 (310)
.+|...+. .-+.++++...|++..+.++..
T Consensus 72 ~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 102 (158)
T PF03938_consen 72 TLSEEERQKRQQELQQKEQELQQFQQQAQQQ 102 (158)
T ss_dssp --SSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44544433 2335555555555555555444
No 146
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=28.53 E-value=1.6e+02 Score=24.21 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021594 125 TVLGYLAKLVLGILGFIVSVAWV 147 (310)
Q Consensus 125 ~vl~~~~kLl~Gii~lllSi~w~ 147 (310)
.++=.++..++-+++++.++..|
T Consensus 215 ~viDR~~~~~F~i~f~~~~i~yw 237 (237)
T PF02932_consen 215 MVIDRLFRILFPIAFILFNIVYW 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhC
Confidence 45556677788888888887765
No 147
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=28.52 E-value=1.1e+02 Score=30.08 Aligned_cols=28 Identities=32% Similarity=0.141 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHhh
Q 021594 12 LATIVGSVLFSIFGGVGIACLPLGLIFS 39 (310)
Q Consensus 12 ~l~~iG~~lfv~y~gvGlaalPi~lI~~ 39 (310)
.+..++..++.+...++++.+++..+--
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~~via~~D~ 201 (342)
T TIGR01404 174 LAPIVGELLKLLILVCLGFFLVVGLADF 201 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667777777777766654
No 148
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.47 E-value=2.3e+02 Score=25.40 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021594 90 NVKSVEKELLQLEEDVKLLE 109 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le 109 (310)
+++.++++...|+.+.....
T Consensus 111 ~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 111 ELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665555433
No 149
>PF04787 Pox_H7: Late protein H7; InterPro: IPR006872 This is a family of poxvirus late H7 proteins.
Probab=28.47 E-value=4.1e+02 Score=23.32 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=44.7
Q ss_pred hhcccCC-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHH----HHHHHHHHHHHHHHhh
Q 021594 38 FSFIRRP-KAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVE----KELLQLEEDVKLLEEM 111 (310)
Q Consensus 38 ~~f~~Rp-k~~is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~----~~~~~Le~~~~~le~~ 111 (310)
.++.+-+ ++ ++.+|+.+.++.|+++..+.-=+-+.++.- -..|.|-||-++.++ |.-....+..+.|..+
T Consensus 59 S~YL~~~~~~-i~pde~~~~~~~IA~eLT~~dii~~di~~y---i~~S~kLKrfik~yk~nn~k~~kki~~~~k~Lkia 133 (147)
T PF04787_consen 59 SDYLNMKTRP-ITPDEYKKYSSAIAKELTNYDIIDDDIDDY---IRSSKKLKRFIKLYKTNNNKQNKKIKEAAKKLKIA 133 (147)
T ss_pred hhhhcCCCcc-CCHHHHHHHHHHHHHHHHHHHHHHhhHHHH---hcccHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 3455544 55 999999998888776644443333333321 134566777777774 5666777777888887
No 150
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=28.34 E-value=2.9e+02 Score=24.57 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021594 90 NVKSVEKELLQLEEDVKLL 108 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~l 108 (310)
++++++++...+++|++.|
T Consensus 126 e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 126 ELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 151
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=28.23 E-value=88 Score=26.18 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
-|.|++-|+.+.+.|+++.++||+.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888876
No 152
>PRK09609 hypothetical protein; Provisional
Probab=27.81 E-value=5.9e+02 Score=25.00 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 021594 91 VKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 91 l~~l~~~~~~Le~~~~~le~~ 111 (310)
.++++++...+|++.+.+|..
T Consensus 140 ~~~~~~ki~~~~~k~~~~~~~ 160 (312)
T PRK09609 140 IQKIKQKIILLEKKKKKLEKT 160 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 778889999999999999987
No 153
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=27.79 E-value=2.9e+02 Score=25.53 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 52 QYIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 52 e~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
++.+.+..|.+|..+++|-=+.+.+
T Consensus 102 ~f~~i~~~i~KR~~KllDYD~~R~~ 126 (211)
T cd07612 102 QFPDVKERVAKRGRKLVDYDSARHH 126 (211)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3566777788888888887544443
No 154
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=27.79 E-value=7e+02 Score=25.81 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021594 55 KEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 55 ~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
+...+......|.++-.+++|.
T Consensus 194 ~~~~~~~~~~~e~l~g~~~ik~ 215 (574)
T PRK11160 194 HLRAQYRVQLTEWLQGQAELTL 215 (574)
T ss_pred HHHHHHHHHHHHHHCCHHHHHH
Confidence 3344444445555554455543
No 155
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=27.78 E-value=1.1e+02 Score=28.14 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021594 56 EATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
..+.+..+-++|+.+-+++..+
T Consensus 32 ~e~~~~~d~~~L~~~Q~~L~~e 53 (228)
T PRK06800 32 VEEEIQKDHEELLAQQKSLHKE 53 (228)
T ss_pred hcchhhhhHHHHHHHHHHHHHH
Confidence 3445555666666666666553
No 156
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=27.68 E-value=3.2e+02 Score=25.25 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 021594 52 QYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLL 108 (310)
Q Consensus 52 e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~l 108 (310)
.+.+.+..|.+|..+++|--+...+-++--.+..||-.++.+-++|+..-+.+.+.+
T Consensus 102 ~f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~l 158 (211)
T cd07611 102 QFPDIKNRIAKRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEF 158 (211)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777778888777766555422111112345445544444444444444433
No 157
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=27.57 E-value=3.2e+02 Score=27.19 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=16.2
Q ss_pred eeeeehhhHHHHHHHHHHHHHHH
Q 021594 269 KYLYKYNVFQIAFVVLAGLTFVY 291 (310)
Q Consensus 269 ~~~~~~nv~~y~~l~~~~l~~i~ 291 (310)
.|+++. |.|+++|+.++....
T Consensus 220 lYv~~s--f~fIL~Gl~vi~a~~ 240 (350)
T KOG4404|consen 220 LYVFFS--FVFILLGLCVIYALL 240 (350)
T ss_pred ceehHh--HHHHHHHHHHHHHHH
Confidence 366677 899999998886653
No 158
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=27.54 E-value=3.5e+02 Score=27.29 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021594 89 KNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~~ 111 (310)
.+.+++++++..||.+.+.++..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 73 AEVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555554
No 159
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=27.54 E-value=2.5e+02 Score=31.47 Aligned_cols=36 Identities=25% Similarity=0.527 Sum_probs=21.2
Q ss_pred ecccCCCchhhHHHHHHHHHHHHHHHHHHhhhhhHhhHH
Q 021594 212 PMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQ 250 (310)
Q Consensus 212 pmr~~~T~~nslLfn~~Llll~s~av~qFc~~~f~~ya~ 250 (310)
|+-.|.+.+..+|.-+.. =.+.++.+|-+ +|+.|..
T Consensus 611 P~~~~~~~~p~~Llst~~--~~s~n~~~~e~-~~~~yla 646 (980)
T KOG0980|consen 611 PLHWRCLTSPDFLLSTAE--NASVNATQFET-SFNNYLA 646 (980)
T ss_pred CcccCcCCCHHHHHHHHH--HHHHHHHHHHH-HHhhhcC
Confidence 444567777777765543 34566667765 5665543
No 160
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=27.23 E-value=3e+02 Score=21.43 Aligned_cols=28 Identities=11% Similarity=0.377 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~y~~ 114 (310)
.-.+++.+++.++.||..+..+...|+.
T Consensus 37 Qi~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 37 QIQEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468889999999999999999998863
No 161
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=27.21 E-value=1e+02 Score=26.89 Aligned_cols=14 Identities=0% Similarity=-0.016 Sum_probs=7.7
Q ss_pred CCChhhhHHHHHHH
Q 021594 82 SKGRKWRKNVKSVE 95 (310)
Q Consensus 82 ~~~~k~rr~l~~l~ 95 (310)
.++.+.++++++++
T Consensus 152 ~ls~~~~~~l~~lr 165 (166)
T PF05991_consen 152 RLSPEELEKLEKLR 165 (166)
T ss_pred CCCHHHHHHHHHHh
Confidence 45555555555554
No 162
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated
Probab=27.14 E-value=2.5e+02 Score=30.65 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=36.9
Q ss_pred cChHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 48 ITRSQYIKEATELGKKA-RELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a-~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+|.+-|.+.+.+++..- .+.-|..++++..+..|-.+ ...+++.-+++.+.+++|.+.|+..
T Consensus 569 vT~eG~~kLkeEL~~L~~v~rpei~k~I~eAR~~GDLs--ENaEY~aAKe~q~~le~RI~~Le~~ 631 (718)
T PRK06330 569 TTSESFTRMKNKLQSLVGKEMVENAKEIEDARALGDLR--ENSEYKFALEKRARLQEEIRVLSEE 631 (718)
T ss_pred eCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHCCCcc--cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 67777777676766653 45666777888877777543 3344444445555555554444443
No 163
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=26.92 E-value=2.6e+02 Score=21.64 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhh
Q 021594 220 MNSFLFNVGLILLCSISVIQFCSTA 244 (310)
Q Consensus 220 ~nslLfn~~Llll~s~av~qFc~~~ 244 (310)
-||+|+-..|+.+.+.++.-|...+
T Consensus 43 RQa~LyD~lmi~ImtIPILSFA~m~ 67 (72)
T PF13268_consen 43 RQAFLYDMLMIAIMTIPILSFAFMG 67 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999886543
No 164
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.71 E-value=2.2e+02 Score=26.29 Aligned_cols=22 Identities=18% Similarity=0.210 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021594 56 EATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
.+.+..++.+++-++.++++++
T Consensus 36 ~~~~sQ~~id~~~~e~~~L~~e 57 (251)
T PF11932_consen 36 AAQQSQKRIDQWDDEKQELLAE 57 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555544
No 165
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=26.62 E-value=1.7e+02 Score=28.67 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021594 52 QYIKEATELGKKARELKK 69 (310)
Q Consensus 52 e~~~~~~~i~~~a~~Lle 69 (310)
|+.+....+.+++.+|.+
T Consensus 3 el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 3 ELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 455666666666666665
No 166
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=26.38 E-value=3.2e+02 Score=21.45 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCChhh-hHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 56 EATELGKKARELKKAADTLHQEERSGSKGRKW-RKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~-rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
-+.++.+.++.+-..-+.-++....+. ++++ ...-+.++.....++.+.+.|+++
T Consensus 6 v~~ev~~sl~~l~~~~~~~~~~~~~~~-~~~e~~~~~~eL~~~l~~ie~~L~DL~~a 61 (97)
T PF09177_consen 6 VKDEVQSSLDRLESLYRRWQRLRSDTS-SSEELKWLKRELRNALQSIEWDLEDLEEA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCC-CcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333 2222 233346666666666666666665
No 167
>PF11917 DUF3435: Protein of unknown function (DUF3435); InterPro: IPR021842 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 435 to 791 amino acids in length. This family is related to PF00589 from PFAM suggesting it may be an integrase enzyme.
Probab=26.36 E-value=1.9e+02 Score=28.94 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=8.4
Q ss_pred ccCCccccChHHHH
Q 021594 41 IRRPKAVITRSQYI 54 (310)
Q Consensus 41 ~~Rpk~~is~~e~~ 54 (310)
++||+. .|+.|-.
T Consensus 270 p~~P~~-Lt~~q~~ 282 (418)
T PF11917_consen 270 PRAPRE-LTDEQKA 282 (418)
T ss_pred CCCCcc-CCHHHHh
Confidence 467877 7766543
No 168
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.35 E-value=2.9e+02 Score=26.23 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 021594 88 RKNVKSVEKELLQLEEDVKLLE 109 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le 109 (310)
...+++-++|.++||++.+.|+
T Consensus 238 de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 238 DEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4566777778888888777653
No 169
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=26.21 E-value=71 Score=24.68 Aligned_cols=28 Identities=7% Similarity=0.025 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCc
Q 021594 277 FQIAFVVLAGLTFVYYAAFGWRRRKPSGK 305 (310)
Q Consensus 277 ~~y~~l~~~~l~~i~~l~~~~~~~~~~~~ 305 (310)
..++.+.+.+++.+|.+.| +.++|+|+.
T Consensus 13 L~ls~i~V~~~~~~wi~~R-a~~~~DKT~ 40 (72)
T PF13268_consen 13 LLLSSILVLLVSGIWILWR-ALRKKDKTA 40 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcCCCcH
Confidence 4567777888888887765 444444443
No 170
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=26.05 E-value=58 Score=26.25 Aligned_cols=27 Identities=4% Similarity=0.190 Sum_probs=14.2
Q ss_pred cccccceeeeehhhHHHHHHHHHHHHHH-HHHHh
Q 021594 263 ESLRGIKYLYKYNVFQIAFVVLAGLTFV-YYAAF 295 (310)
Q Consensus 263 ~nl~~~~~~~~~nv~~y~~l~~~~l~~i-~~l~~ 295 (310)
.+++++|. .| +..-+++++..+ |+.||
T Consensus 28 n~~~~Lgm--~~----lvI~~iFil~VilwfvCC 55 (94)
T PF05393_consen 28 NNWPNLGM--WF----LVICGIFILLVILWFVCC 55 (94)
T ss_pred CCCCccch--hH----HHHHHHHHHHHHHHHHHH
Confidence 45677774 23 344555555444 55554
No 171
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=25.85 E-value=1.3e+02 Score=29.62 Aligned_cols=27 Identities=15% Similarity=-0.086 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHhh
Q 021594 13 ATIVGSVLFSIFGGVGIACLPLGLIFS 39 (310)
Q Consensus 13 l~~iG~~lfv~y~gvGlaalPi~lI~~ 39 (310)
+..+|..++-+...++++.+++..+--
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~via~~D~ 202 (347)
T TIGR00328 176 ITNFLDIAKSLLILVLLLLLVIAVFDY 202 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666667777777666543
No 172
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=25.70 E-value=1.8e+02 Score=25.54 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=33.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
+|..-|.+.+.++ +.|. ++++..+..|-.|. .|++....+++.+.|+++...++.
T Consensus 31 lT~~G~~~L~~El----~~L~---~~i~~Ar~~GDlsE-ak~~~~~~e~rI~~L~~~L~~A~I 85 (160)
T PRK06342 31 VTEAGLKALEDQL----AQAR---AAYEAAQAIEDVNE-RRRQMARPLRDLRYLAARRRTAQL 85 (160)
T ss_pred ECHHHHHHHHHHH----HHHH---HHHHHHHHCCChhH-HHHHHHHHHHHHHHHHHHHccCEE
Confidence 6666666555443 3333 45666666676654 555666777777777776665544
No 173
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=25.65 E-value=3.7e+02 Score=25.51 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQGEK 117 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~y~~~~~ 117 (310)
+-+|+..+++.....++..++.|..|...-.
T Consensus 153 ~mkei~tY~~~fQ~~Qel~~RaEdy~kckI~ 183 (265)
T PF06409_consen 153 AMKEIHTYKQMFQRMQELQQRAEDYYKCKIA 183 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 5578888888888888888888988876544
No 174
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=25.54 E-value=2.6e+02 Score=26.46 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=11.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 021594 49 TRSQYIKEATELGKKARELKKAA 71 (310)
Q Consensus 49 s~~e~~~~~~~i~~~a~~Lle~~ 71 (310)
+.++|.+++.+-+.-+++=.+..
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~ 213 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKR 213 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhH
Confidence 45566665544444343333333
No 175
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=25.50 E-value=3.5e+02 Score=21.56 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 021594 90 NVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~ 110 (310)
.++..+.++..||.-...|+.
T Consensus 67 ~Id~Ie~~V~~LE~~v~~LD~ 87 (99)
T PF10046_consen 67 QIDQIEEQVTELEQTVYELDE 87 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 176
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=25.50 E-value=2.9e+02 Score=26.88 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 88 RKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
++.++.+-+-...||+..+.|.+-
T Consensus 61 ~~FL~~Fp~~k~~Le~~I~kL~~l 84 (313)
T PF05461_consen 61 ERFLKEFPQLKEELEEHIRKLRAL 84 (313)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456666666666666665555544
No 177
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.46 E-value=1.3e+02 Score=24.07 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=15.9
Q ss_pred HHHhhhhhhhhhHHH-Hhhccc
Q 021594 22 SIFGGVGIACLPLGL-IFSFIR 42 (310)
Q Consensus 22 v~y~gvGlaalPi~l-I~~f~~ 42 (310)
.+-.|.|+..+|+|+ +|+|-.
T Consensus 28 ~~m~~~gi~~lPVD~w~KGy~~ 49 (95)
T COG4298 28 YFMLGLGIWLLPVDLWTKGYWA 49 (95)
T ss_pred HHHHHHHhheechHHHHHHHHH
Confidence 345799999999996 677643
No 178
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=25.45 E-value=4.2e+02 Score=28.46 Aligned_cols=20 Identities=0% Similarity=0.097 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 021594 88 RKNVKSVEKELLQLEEDVKL 107 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~ 107 (310)
..++++|+|+....+.-++.
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ 394 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYES 394 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555444443333
No 179
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=25.05 E-value=1.4e+02 Score=24.97 Aligned_cols=15 Identities=20% Similarity=0.260 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 021594 56 EATELGKKARELKKA 70 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~ 70 (310)
...+|....+++.+.
T Consensus 82 ~~~~i~~~i~~~k~~ 96 (139)
T PF05615_consen 82 LNEEIEQEIEQAKKE 96 (139)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 180
>PHA02898 virion envelope protein; Provisional
Probab=24.99 E-value=79 Score=25.44 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Q 021594 3 TTFPEYVVALATIVGSVLFSIFG 25 (310)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfv~y~ 25 (310)
.|..-|++|...++|.++|..|+
T Consensus 47 lSii~FIlgivl~lG~~ifs~y~ 69 (92)
T PHA02898 47 ISIISFILAIILILGIIFFKGYN 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667999999999998877665
No 181
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.88 E-value=3.5e+02 Score=21.38 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
.-+.+.+.++.+...++.+...++..
T Consensus 71 ~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777765
No 182
>PLN02777 photosystem I P subunit (PSI-P)
Probab=24.81 E-value=2e+02 Score=25.75 Aligned_cols=52 Identities=25% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHH
Q 021594 103 EDVKLLEEMYPQGEKAETSWALTVLGYLAKLVLGILGFIVSVAWVAHIVIYLLINPPLHPFLNEV 167 (310)
Q Consensus 103 ~~~~~le~~y~~~~~~~~~~~~~vl~~~~kLl~Gii~lllSi~w~i~iil~~i~~~~~~~~LN~~ 167 (310)
+-+..+++..++.|++. ++ .|+++..+-.+|+..-++..||+.|+.|++=++
T Consensus 78 ei~k~~~e~Wd~~EdK~-----av--------~~l~~aaiVal~v~~~VL~AId~lPLlP~lLEL 129 (167)
T PLN02777 78 EIVKTVQEAWDKVEDKY-----AV--------SSLAFAGVVALWGSAGMISAIDRLPLVPGVLEL 129 (167)
T ss_pred HHHHHHHHHHhhhcchh-----HH--------HHHHHHHHHHHHHHHHHHHHHhccccccchHHH
Confidence 33445566666677631 12 244455555678888899999998888877655
No 183
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=24.80 E-value=3.3e+02 Score=20.99 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021594 89 KNVKSVEKELLQLEEDVKL 107 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~ 107 (310)
.+.++.++++...|++.+-
T Consensus 12 ~~~~~i~~rLd~iEeKvEf 30 (70)
T PF04210_consen 12 DDFNEIMKRLDEIEEKVEF 30 (70)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444555555554443
No 184
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=24.76 E-value=7.7e+02 Score=25.27 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 021594 90 NVKSVEKELLQLEEDV 105 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~ 105 (310)
..+++++..+.+++..
T Consensus 226 ~~~~~~~~~~~~~~~~ 241 (582)
T PRK11176 226 ETKRFDKVSNRMRQQG 241 (582)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 185
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=24.68 E-value=5.1e+02 Score=24.69 Aligned_cols=93 Identities=16% Similarity=0.087 Sum_probs=0.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHhh---------hhhhhhhHHHHhhcccCCccccChHHHHHHHHHHHHHHHHHHHHH
Q 021594 1 MRTTFPEYVVALATIVGSVLFSIFGG---------VGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAA 71 (310)
Q Consensus 1 ~~vsf~~f~i~~l~~iG~~lfv~y~g---------vGlaalPi~lI~~f~~Rpk~~is~~e~~~~~~~i~~~a~~Lle~~ 71 (310)
++-+.+.++.-+++++..+.+.+-.. .|++..|....... ++|.. .-+....--...+++.++|
T Consensus 3 f~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~r~~~~~~~~p~~~~~-~~p~~------~~~~~~~~~~~~~~l~~EN 75 (283)
T TIGR00219 3 FLVKPKLFIRLLLALIVSLGFIIADSRNSSIQKRRSDMFTAVTLNYYIQ-NRPRE------VFDGISENLKDVNNLEYEN 75 (283)
T ss_pred CCcCCchHHHHHHHHHHHHHHHHhccccccchheeeeEeeeeEHHHHHH-hhHHH------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhcCCCChhhhHHH-HHHHHHHHHHHHHHHHHHh
Q 021594 72 DTLHQEERSGSKGRKWRKNV-KSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 72 ~~lq~~~~~g~~~~k~rr~l-~~l~~~~~~Le~~~~~le~ 110 (310)
+++++ .-.++ .+++++...+++|.++|.+
T Consensus 76 ~~Lr~----------e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 76 YKLRQ----------ELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
No 186
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=24.67 E-value=2.1e+02 Score=27.80 Aligned_cols=43 Identities=14% Similarity=0.310 Sum_probs=29.7
Q ss_pred CCChhHHHHHHhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021594 160 LHPFLNEVFIKLDDLWGL-LGTAAFAFFCFYLLLAVIAGAMMLG 202 (310)
Q Consensus 160 ~~~~LN~~fi~l~~~fpl-~~~i~~~~~~~Yll~csi~G~~~~G 202 (310)
++|.+-..+..+.+++|+ +|=+++.+++++++...+..+.+.-
T Consensus 6 iYp~i~~~l~~~~g~~PFSvgdi~~~~~il~ll~~~~~~~~~~~ 49 (318)
T PF12725_consen 6 IYPVISKLLRRLFGWFPFSVGDILYYLLILFLLYYLIRLIRKIF 49 (318)
T ss_pred chHHHHHHHHHhccCcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888876554 1448888888887777766665543
No 187
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=24.66 E-value=2.9e+02 Score=29.57 Aligned_cols=62 Identities=31% Similarity=0.339 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc---C---CCChhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021594 53 YIKEATELGKKARELKKAADTLHQEERS---G---SKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (310)
Q Consensus 53 ~~~~~~~i~~~a~~Lle~~~~lq~~~~~---g---~~~~k~rr~l~~l~~~~~~Le~~~~~le~~y~~ 114 (310)
..+....++.+.+++.++-.+.+.+... + ....+++++.++.++++..|+++...++...+.
T Consensus 634 h~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~~d 701 (759)
T KOG0981|consen 634 HEKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQMTD 701 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3445566777777777777666653322 2 234567778888888888888888888887443
No 188
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=24.51 E-value=4.4e+02 Score=23.72 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 021594 92 KSVEKELLQLEEDVKL 107 (310)
Q Consensus 92 ~~l~~~~~~Le~~~~~ 107 (310)
+.+++++..|+.+.+.
T Consensus 156 ~e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 156 EELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 189
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=24.42 E-value=3.6e+02 Score=26.96 Aligned_cols=100 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCCccccChHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhcC-CC
Q 021594 8 YVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKK---ARELKKAADTLHQEERSG-SK 83 (310)
Q Consensus 8 f~i~~l~~iG~~lfv~y~gvGlaalPi~lI~~f~~Rpk~~is~~e~~~~~~~i~~~---a~~Lle~~~~lq~~~~~g-~~ 83 (310)
|+-+.++.+||++-+=+--=-|-+-.-.|+..=++ |-+-..+-+.+....+.++ +++|.-+++.+..+--+. ..
T Consensus 44 f~f~~iss~gwff~i~~re~qlk~aa~~llq~kir--k~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~v 121 (401)
T PF06785_consen 44 FVFSIISSLGWFFAIGRREKQLKTAAGQLLQTKIR--KITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREV 121 (401)
T ss_pred eehHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHH
Q 021594 84 GRKWRKNVKSVEKELLQLEEDVKLLE 109 (310)
Q Consensus 84 ~~k~rr~l~~l~~~~~~Le~~~~~le 109 (310)
=.|.+.+.+.++.-++.++++...++
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lq 147 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQ 147 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHH
No 190
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.38 E-value=5e+02 Score=25.33 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=21.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
.+.+.+++.+.+++++..++-.....++.+
T Consensus 115 ~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~ 144 (300)
T KOG2629|consen 115 ESKDKLEADKRQLDDQFDKAAKSLNALMDE 144 (300)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667778888888877777776666654
No 191
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.29 E-value=2.5e+02 Score=30.08 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 53 YIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 53 ~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
+.++.+.+.++.++|-++++++++
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~ 443 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKR 443 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555554
No 192
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=24.21 E-value=8e+02 Score=25.29 Aligned_cols=11 Identities=18% Similarity=0.298 Sum_probs=5.3
Q ss_pred hhhhhHHHHhh
Q 021594 29 IACLPLGLIFS 39 (310)
Q Consensus 29 laalPi~lI~~ 39 (310)
++.+|+-++-.
T Consensus 144 l~~~~l~~~~~ 154 (569)
T PRK10789 144 LLPMPVMAIMI 154 (569)
T ss_pred HHHHHHHHHHH
Confidence 44455554443
No 193
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=24.05 E-value=3.3e+02 Score=30.58 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=40.1
Q ss_pred cChHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 48 ITRSQYIKEATELGKKA-RELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a-~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+|.+-|.+.+.+++..- .+.-|..++++..|..|-.| +-.++++-+++.+.+|+|.+.|+..
T Consensus 752 lT~eg~~kL~~EL~~L~~v~Rpei~~~I~~Ar~~GDLs--ENaEY~aAKe~q~~le~RI~eLe~~ 814 (906)
T PRK14720 752 VTRRALNKKKKELEHLKDVEMPENSKDIGEAQELGDLR--ENAEYKAAKEKQQQLQAALKRLEAE 814 (906)
T ss_pred eCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCCcc--cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888877764 46777888888888777444 3334445555555555555554444
No 194
>COG4582 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.92 E-value=2.5e+02 Score=26.15 Aligned_cols=97 Identities=8% Similarity=-0.013 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhhhHHHHHH
Q 021594 51 SQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYL 130 (310)
Q Consensus 51 ~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~vl~~~ 130 (310)
++.-+-..+.+-|++-++|.-++.|.-+.=-+...-|...++++.+|+.+--...-..++.-+.- ++..|+ +.+|.=
T Consensus 45 ~dlldV~er~elkseLlKelerQ~q~l~~w~~vpgvDqe~ldal~~el~~a~~~L~sa~r~GQ~l--~edr~i-s~iRqR 121 (244)
T COG4582 45 SELLDVFERGEVRTELLKELDRQQQKLQTWIGVPGVDQERLDALIQQLKAAGSVLISAPRIGQSL--REDRLI-ALVRQR 121 (244)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHhhhhhhcchhhHhHh--hhhHHH-HHHHHH
Confidence 34444333444445445444444443221123334477888888877665544443333331111 233445 566766
Q ss_pred HHHHHHHHHH-HHHHHHHHHH
Q 021594 131 AKLVLGILGF-IVSVAWVAHI 150 (310)
Q Consensus 131 ~kLl~Gii~l-llSi~w~i~i 150 (310)
+.+=+|..++ +=++-.|.|.
T Consensus 122 ~~iPGG~C~FDLPalh~WlH~ 142 (244)
T COG4582 122 LSIPGGCCSFDLPTLHIWLHL 142 (244)
T ss_pred ccCCCcccccCcHHHHHHHhC
Confidence 6677777665 5577778876
No 195
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.68 E-value=1.4e+02 Score=26.92 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 021594 90 NVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+-+++++++++||-+.+.+...
T Consensus 30 dRr~me~~Ek~LElEIkk~Aa~ 51 (208)
T KOG3231|consen 30 DRRAMEKQEKQLELEIKKMAAI 51 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3345566667777776666654
No 196
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=23.58 E-value=39 Score=35.85 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHhhcc----cC-CccccChHHHHHHHHH
Q 021594 14 TIVGSVLFSIFGGVGIACLPLGLIFSFI----RR-PKAVITRSQYIKEATE 59 (310)
Q Consensus 14 ~~iG~~lfv~y~gvGlaalPi~lI~~f~----~R-pk~~is~~e~~~~~~~ 59 (310)
..++-.++.+...++++.+++..+.-.. .. .-+ +|++|.+||.++
T Consensus 440 ~~~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lk-MskqEvK~E~Ke 489 (609)
T PRK12772 440 TELKSLVISIFFRITLIMIIIAVADYVYQKYQYNKDLR-MTKQEVKEEYKQ 489 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHh
Confidence 3344555555555666666665553322 11 224 888888876655
No 197
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.58 E-value=3.1e+02 Score=24.56 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 021594 92 KSVEKELLQLEEDVKLLEEMYP 113 (310)
Q Consensus 92 ~~l~~~~~~Le~~~~~le~~y~ 113 (310)
..+-++...|+.+...|+..+.
T Consensus 106 ~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 106 EELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666655533
No 198
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=23.58 E-value=1.6e+02 Score=29.19 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHhh
Q 021594 13 ATIVGSVLFSIFGGVGIACLPLGLIFS 39 (310)
Q Consensus 13 l~~iG~~lfv~y~gvGlaalPi~lI~~ 39 (310)
+..++..++.+...++++.+++..+--
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~via~~D~ 202 (349)
T PRK12721 176 LPVVSTLIFWLWGGLLACYLVFGILDY 202 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666665543
No 199
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=23.52 E-value=91 Score=22.04 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 021594 93 SVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 93 ~l~~~~~~Le~~~~~le~~ 111 (310)
+++||...|++.+++|.+.
T Consensus 15 qlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 15 QLRRELNSLRRSVHELCTR 33 (48)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444555555555554443
No 200
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=23.52 E-value=3.6e+02 Score=24.29 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021594 90 NVKSVEKELLQLEEDVKLLE 109 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le 109 (310)
++++.+.+...++.+.+.++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~ 74 (265)
T TIGR00999 55 EFESAEYALEEAQAEVQAAK 74 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 201
>PRK06937 type III secretion system protein; Reviewed
Probab=23.37 E-value=3.8e+02 Score=23.99 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=16.9
Q ss_pred ccccChHHHHH--HHHHHH----HHHHHHHHHHHH
Q 021594 45 KAVITRSQYIK--EATELG----KKARELKKAADT 73 (310)
Q Consensus 45 k~~is~~e~~~--~~~~i~----~~a~~Lle~~~~ 73 (310)
++|+.+.+|.. ++.+|- ++|+++++..++
T Consensus 18 ~~vl~a~~~~~~~~A~~il~~A~~~A~~i~~~A~~ 52 (204)
T PRK06937 18 LRVLRAEDYQSLLSAEELVEAARQRAEEIEAEAQE 52 (204)
T ss_pred cccccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888755 333333 456666666654
No 202
>PRK06298 type III secretion system protein; Validated
Probab=23.32 E-value=1.6e+02 Score=29.24 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHhh
Q 021594 14 TIVGSVLFSIFGGVGIACLPLGLIFS 39 (310)
Q Consensus 14 ~~iG~~lfv~y~gvGlaalPi~lI~~ 39 (310)
..++..++.+...++++.+++..+--
T Consensus 178 ~~~~~~~~~l~~~~~~~~~via~~D~ 203 (356)
T PRK06298 178 QIFKEILYKAVTSIGIFFLVVAVLDL 203 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666667777666544
No 203
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=23.30 E-value=59 Score=23.02 Aligned_cols=14 Identities=43% Similarity=0.968 Sum_probs=9.6
Q ss_pred HHHHHHhhhhhhhh
Q 021594 19 VLFSIFGGVGIACL 32 (310)
Q Consensus 19 ~lfv~y~gvGlaal 32 (310)
++-+++|++|++|+
T Consensus 3 iLviL~g~vGLsa~ 16 (46)
T PF11431_consen 3 ILVILFGAVGLSAL 16 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehHHHHHhHHHHH
Confidence 35567777887775
No 204
>PRK08156 type III secretion system protein SpaS; Validated
Probab=23.22 E-value=1.6e+02 Score=29.31 Aligned_cols=27 Identities=11% Similarity=-0.044 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHhh
Q 021594 13 ATIVGSVLFSIFGGVGIACLPLGLIFS 39 (310)
Q Consensus 13 l~~iG~~lfv~y~gvGlaalPi~lI~~ 39 (310)
+..++..++.+...++++.+++..+--
T Consensus 171 ~~~~~~~~~~l~~~~~~~~lvia~~D~ 197 (361)
T PRK08156 171 IVIWRELLVKLVLTFLACALIVLILDF 197 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666667777666654
No 205
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=23.21 E-value=4.2e+02 Score=21.72 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021594 56 EATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~ 76 (310)
+-.++.+...+|+|+|.+++.
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555543
No 206
>PLN02678 seryl-tRNA synthetase
Probab=23.16 E-value=4.7e+02 Score=26.82 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021594 89 KNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~~ 111 (310)
.+.++++++...||.+.+.++..
T Consensus 78 ~~~~~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 78 AETKELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666554
No 207
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=23.16 E-value=3.1e+02 Score=20.70 Aligned_cols=30 Identities=7% Similarity=-0.190 Sum_probs=24.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 121 SWALTVLGYLAKLVLGILGFIVSVAWVAHI 150 (310)
Q Consensus 121 ~~~~~vl~~~~kLl~Gii~lllSi~w~i~i 150 (310)
+++|.++.||+-++.-+++.+-+-+|..+-
T Consensus 21 kPWwdvf~~YL~~~mlmi~v~~~~~ql~~~ 50 (65)
T PF12534_consen 21 KPWWDVFFDYLVLLMLMIFVFGGTFQLTQD 50 (65)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhHHhccc
Confidence 456799999999999999988888887443
No 208
>PLN03086 PRLI-interacting factor K; Provisional
Probab=23.07 E-value=2.4e+02 Score=29.97 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=6.3
Q ss_pred HHHHHhhcccCcc
Q 021594 105 VKLLEEMYPQGEK 117 (310)
Q Consensus 105 ~~~le~~y~~~~~ 117 (310)
..++++.-..++|
T Consensus 63 ~~~~~~~~~~~~g 75 (567)
T PLN03086 63 DQQMQESLQAGRG 75 (567)
T ss_pred HHHHHHHHHcCCC
Confidence 4445555444555
No 209
>PRK09108 type III secretion system protein HrcU; Validated
Probab=23.03 E-value=1.6e+02 Score=29.11 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHhh
Q 021594 13 ATIVGSVLFSIFGGVGIACLPLGLIFS 39 (310)
Q Consensus 13 l~~iG~~lfv~y~gvGlaalPi~lI~~ 39 (310)
+..++..++-+...++++.+++..+--
T Consensus 178 ~~~~~~~~~~l~~~~~~~~~via~~D~ 204 (353)
T PRK09108 178 AQILWTVLMKLLAVAAGVFLLVGAADW 204 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666544
No 210
>KOG4136 consensus Predicted mitochondrial cholesterol transporter [Signal transduction mechanisms; Lipid transport and metabolism]
Probab=22.90 E-value=5.9e+02 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=17.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 021594 173 DLWGLLGTAAFAFFCFYLLLAVIAG 197 (310)
Q Consensus 173 ~~fpl~~~i~~~~~~~Yll~csi~G 197 (310)
+.||. ..+++++++-|...|-+.+
T Consensus 62 d~fp~-~li~fsl~~~~vy~~~l~~ 85 (198)
T KOG4136|consen 62 DGFPF-SLILFSLFIQYVYYGLLDT 85 (198)
T ss_pred cCCcH-HHHHHHHHHHHHHHHHhcc
Confidence 45777 7888888888877665543
No 211
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.84 E-value=1.8e+02 Score=30.36 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=25.7
Q ss_pred hhhhhhhhhH------HHHhhcccCCccccChHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 021594 25 GGVGIACLPL------GLIFSFIRRPKAVITRSQYIK-EATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 25 ~gvGlaalPi------~lI~~f~~Rpk~~is~~e~~~-~~~~i~~~a~~Lle~~~~lq~ 76 (310)
+++||--||= ..+-++.- |++-|+-++++. .+..=++|.+.|.+.-+..|+
T Consensus 442 ~~YgLl~lP~M~Elk~~~~~~~~~-~~~~id~~~ikykdkkrEk~Rq~~l~~~~~~~~~ 499 (567)
T KOG0345|consen 442 TLYGLLRLPKMPELKQYKIGEFFF-PKPAIDFSEIKYKDKKREKQRQQKLKVRKEAKQE 499 (567)
T ss_pred HHHHHHhCCCcHHHhhhhccceec-cCCCcchhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 5677777772 23333311 332377777644 333334455555555554444
No 212
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=22.77 E-value=2.9e+02 Score=19.72 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
++.+++.+....+...++++.+..++++.
T Consensus 4 vd~~~l~~~a~~~~~~~~~l~~~~~~l~~ 32 (86)
T PF06013_consen 4 VDPEQLRAAAQQLQAQADELQSQLQQLES 32 (86)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888888888888887
No 213
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=22.71 E-value=1.1e+02 Score=23.67 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=15.5
Q ss_pred HHhhhhhhhhhHHHHhhccc
Q 021594 23 IFGGVGIACLPLGLIFSFIR 42 (310)
Q Consensus 23 ~y~gvGlaalPi~lI~~f~~ 42 (310)
+.+.+=|+..|+=+|.++.+
T Consensus 22 Fl~~vll~LtPlfiisa~lS 41 (74)
T PF15086_consen 22 FLTTVLLILTPLFIISAVLS 41 (74)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 45566688889999998776
No 214
>PRK10722 hypothetical protein; Provisional
Probab=22.61 E-value=1.9e+02 Score=27.37 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 021594 88 RKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
+++++...|+++.|.+=+|.|..
T Consensus 189 q~~L~~t~rKLEnLTdIERqLSs 211 (247)
T PRK10722 189 QYQLELTTRKLENLTDIERQLSS 211 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555555555555555555544
No 215
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=22.48 E-value=5.3e+02 Score=22.60 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 021594 93 SVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 93 ~l~~~~~~Le~~~~~le~~ 111 (310)
.++-....|+++.+.+++.
T Consensus 129 ~i~L~~e~L~~~~~~a~~~ 147 (171)
T PRK08307 129 HIRLALEHLEREEEEAEEE 147 (171)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555444
No 216
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.43 E-value=4e+02 Score=21.11 Aligned_cols=70 Identities=13% Similarity=0.340 Sum_probs=44.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------cCCCC-------hhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQEER------SGSKG-------RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~------~g~~~-------~k~rr~l~~l~~~~~~Le~~~~~le~~y~~ 114 (310)
++.++.....+..+..++++.....+++++.. +|.-+ .++.+...++.+.+..+-+..++..+.+..
T Consensus 7 ~~~~~~~~~A~~~~~~~~~i~~~l~~l~s~~~~l~~~W~G~a~~~f~~~~~~w~~~~~~l~~~l~~i~~~l~~~a~~~~~ 86 (97)
T COG4842 7 VNPEEMRATAKDYAGSSGEIQALLQDLASEIAKLQSAWEGDAAEAFQSEQQQWNQAATELNEALEQLADALRHAADAFEE 86 (97)
T ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777788887777777777776432 23211 235566667777777777776666666555
Q ss_pred Ccc
Q 021594 115 GEK 117 (310)
Q Consensus 115 ~~~ 117 (310)
.+.
T Consensus 87 ~d~ 89 (97)
T COG4842 87 ADQ 89 (97)
T ss_pred HHH
Confidence 543
No 217
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=22.43 E-value=2.6e+02 Score=26.85 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 021594 186 FCFYLLLAVIAGAMMLGL 203 (310)
Q Consensus 186 ~~~Yll~csi~G~~~~Gi 203 (310)
+...+++||-.=...+|+
T Consensus 154 l~~~ifscTe~EA~nlG~ 171 (298)
T PF11262_consen 154 LSPLIFSCTENEAENLGR 171 (298)
T ss_pred hhhHHhccCHHHHHHHHH
Confidence 445677778777778884
No 218
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.31 E-value=2.2e+02 Score=26.06 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021594 89 KNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~~ 111 (310)
++++.+++++..++.+...+++.
T Consensus 123 kklnslkk~~e~lr~el~k~~e~ 145 (203)
T KOG3433|consen 123 KKLNSLKKILESLRWELAKIQET 145 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555555555554444444443
No 219
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=22.30 E-value=8.4e+02 Score=26.55 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=14.9
Q ss_pred hhhhhhhhhHHHHhhcccCC
Q 021594 25 GGVGIACLPLGLIFSFIRRP 44 (310)
Q Consensus 25 ~gvGlaalPi~lI~~f~~Rp 44 (310)
+.+.+++.|+..+-+...-|
T Consensus 296 ~li~l~~~~l~~l~~~~~~~ 315 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQP 315 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888877655
No 220
>PLN02320 seryl-tRNA synthetase
Probab=22.24 E-value=4.3e+02 Score=27.59 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 021594 90 NVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+.+.++++...||.+.+.++..
T Consensus 138 ~~k~lk~~i~~le~~~~~~~~~ 159 (502)
T PLN02320 138 EGKNLKEGLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665555543
No 221
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=22.23 E-value=1.4e+02 Score=25.19 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQGE 116 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~y~~~~ 116 (310)
-++.+++++++.+.+|++.+++|...+..+
T Consensus 79 ~~~~l~~~~~~~~~~e~Rlr~mE~yVTS~~ 108 (118)
T PRK10697 79 SSELLDEVDRELAAGEQRLREMERYVTSDT 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345689999999999999999999866443
No 222
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.18 E-value=9.4e+02 Score=25.92 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=39.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhhheeeeecccCCCchhh--HHHHHHHHHHHHHHHHHH
Q 021594 171 LDDLWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNS--FLFNVGLILLCSISVIQF 240 (310)
Q Consensus 171 l~~~fpl~~~i~~~~~~~Yll~csi~G~~~~GiRf~~~~i~pmr~~~T~~ns--lLfn~~Llll~s~av~qF 240 (310)
....+|+.| -.+-++.+.+.-+-+.|+.+-|.+-.+ |+++++|.+.-.. ++..+....+..+++..+
T Consensus 260 ~~~~~~l~~-~~~v~l~~fl~~~niy~W~~~rVNy~f--If~~~~~~~l~~~~~l~i~~~~~~~~~l~~l~~ 328 (617)
T KOG1162|consen 260 METMFPLYG-FGLVVLHKFLYNVNIYEWSRTRVNYKF--IFEFDQRTELGYRDILLIHNTNGILEFLPVLKN 328 (617)
T ss_pred HHHHHHHHH-HHHHHHHHHHhcCchHHHHHhcCCcee--eecCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678766 334444555666778888887775444 5666666665544 444444455555555554
No 223
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=22.08 E-value=3.5e+02 Score=23.13 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021594 86 KWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (310)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~y~~ 114 (310)
..|+++++++++...|+++.+.|...|-.
T Consensus 57 ~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~ 85 (126)
T PF07028_consen 57 SQRSELKELKQELDVLSKELQALRKEYLE 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999998888888653
No 224
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=21.98 E-value=4.3e+02 Score=21.36 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 85 RKWRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 85 ~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
.+.+.++++++++...-.++.+.+..
T Consensus 54 ~~~~~~l~~~~~~lk~~r~~~~v~k~ 79 (106)
T PF05837_consen 54 EELSEKLEKLEKELKKSRQRWRVMKN 79 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444443
No 225
>COG2770 ResE FOG: HAMP domain [Signal transduction mechanisms]
Probab=21.92 E-value=3.5e+02 Score=20.55 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 021594 56 EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKL 107 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~ 107 (310)
.+..+.+...++.+.++++..+.-++....+-+-|+..++++.+.+.+..+.
T Consensus 26 ~~~~v~~~l~~l~~~~~~~~~g~~~~~i~~~~~dEi~~L~~a~~~m~~~l~~ 77 (83)
T COG2770 26 AARRVTRPLRRLADLAQNLALGDLSAEIPQPMLDEIGELAKAFNRMRDSLQR 77 (83)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCCccccCCccchhHHHHHHHHHHHHHHHHHH
Confidence 3445566667777888888776555555444566777787777777665443
No 226
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=21.91 E-value=3.5e+02 Score=22.63 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=19.0
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHH
Q 021594 82 SKGRKWRKNVKSVEKELLQLEEDVKL 107 (310)
Q Consensus 82 ~~~~k~rr~l~~l~~~~~~Le~~~~~ 107 (310)
..+.|.-+|++.-+.+...|+.+++.
T Consensus 35 ~ld~k~tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 35 ALDAKYTKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 35566777888888888888777654
No 227
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=21.88 E-value=1.1e+03 Score=25.93 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021594 127 LGYLAKLVLGILGFIVSVAWVAHIVIYLLI 156 (310)
Q Consensus 127 l~~~~kLl~Gii~lllSi~w~i~iil~~i~ 156 (310)
-|++.-+++..+.+++.+.-.+-++.-..-
T Consensus 412 yR~~~~lil~~~llLIv~~~~lGLl~G~~G 441 (806)
T PF05478_consen 412 YRWIVGLILCCVLLLIVLCLLLGLLCGCCG 441 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 355666666666666666666666665554
No 228
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.87 E-value=3.7e+02 Score=28.49 Aligned_cols=14 Identities=36% Similarity=0.273 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 021594 226 NVGLILLCSISVIQ 239 (310)
Q Consensus 226 n~~Llll~s~av~q 239 (310)
+..|.+-..++++|
T Consensus 443 ~~~l~lsl~iGvi~ 456 (646)
T PRK05771 443 MTILIISLLIGVIH 456 (646)
T ss_pred HHHHHHHHHHHHHH
Confidence 35566666667777
No 229
>PRK13824 replication initiation protein RepC; Provisional
Probab=21.85 E-value=2.6e+02 Score=28.20 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 56 EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+-+=+..|++|+.+..++.+.+ |++++.+++++..+.++.+.+-++
T Consensus 140 DLsPL~~R~~El~~~A~~~~ae----------~~~~r~lr~~it~~rRdi~~li~~ 185 (404)
T PRK13824 140 DLAPLLARAEEFEALAEQVAAE----------RKALRRLRERLTLCRRDIAKLIEA 185 (404)
T ss_pred chHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888763 567777777777777777665543
No 230
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=21.77 E-value=1.1e+02 Score=18.58 Aligned_cols=16 Identities=13% Similarity=0.393 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 021594 90 NVKSVEKELLQLEEDV 105 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~ 105 (310)
++++++++...||++.
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5667777777776543
No 231
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=21.65 E-value=39 Score=23.45 Aligned_cols=16 Identities=25% Similarity=0.621 Sum_probs=13.5
Q ss_pred ehhhHHHHHHHHHHHH
Q 021594 273 KYNVFQIAFVVLAGLT 288 (310)
Q Consensus 273 ~~nv~~y~~l~~~~l~ 288 (310)
.|++|+||.|+++-.+
T Consensus 3 ~YsvfvFaiLaissvs 18 (43)
T PF10917_consen 3 VYSVFVFAILAISSVS 18 (43)
T ss_pred eeeehHHHHhhhhccc
Confidence 4688999999998877
No 232
>PF08278 DnaG_DnaB_bind: DNA primase DnaG DnaB-binding ; InterPro: IPR013173 Eubacterial DnaG primases interact with several factors to form the replisome. One of these factors is DnaB, a helicase. This domain has been demonstrated to be responsible for the interaction between DnaG and DnaB []. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003896 DNA primase activity, 0006269 DNA replication, synthesis of RNA primer; PDB: 2HAJ_A 1T3W_B.
Probab=21.64 E-value=3e+02 Score=22.21 Aligned_cols=11 Identities=0% Similarity=0.106 Sum_probs=3.4
Q ss_pred CCChhhhHHHH
Q 021594 82 SKGRKWRKNVK 92 (310)
Q Consensus 82 ~~~~k~rr~l~ 92 (310)
+.+..+|++++
T Consensus 114 ~Lt~eEk~el~ 124 (127)
T PF08278_consen 114 GLTDEEKQELR 124 (127)
T ss_dssp ---HHHHHHHH
T ss_pred CcCHHHHHHHH
Confidence 34444444443
No 233
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=21.53 E-value=2.7e+02 Score=23.92 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=21.9
Q ss_pred HhhcccCCccccChHHH-----HHHHHHHHHH-HHHHHHHHHHHHHh
Q 021594 37 IFSFIRRPKAVITRSQY-----IKEATELGKK-ARELKKAADTLHQE 77 (310)
Q Consensus 37 I~~f~~Rpk~~is~~e~-----~~~~~~i~~~-a~~Lle~~~~lq~~ 77 (310)
-..|-.||. ||.+|+ +|.|.++--+ ++.+.+.-+|+++.
T Consensus 78 Rdef~YkP~--lT~~QF~s~gFAErKi~i~~Di~~~v~~~h~el~r~ 122 (131)
T PF15007_consen 78 RDEFNYKPS--LTKAQFFSKGFAERKIIIVCDILNLVKKKHKELQRQ 122 (131)
T ss_pred HHHhCCCCC--CCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666673 999986 5655554444 33444444555553
No 234
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=21.52 E-value=4.6e+02 Score=23.87 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 54 IKEATELGKKARELKKAADTLHQEER-SGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 54 ~~~~~~i~~~a~~Lle~~~~lq~~~~-~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
++.-..+..|.+.+-++-+.+=.... +-..++..++++.++++.++.|++...++-+.
T Consensus 78 A~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~l 136 (189)
T TIGR02132 78 ASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILEL 136 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555444433322211 12345667889999999999999887665444
No 235
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=21.48 E-value=1.2e+02 Score=29.94 Aligned_cols=41 Identities=10% Similarity=0.201 Sum_probs=27.5
Q ss_pred hhhhhHHHHhhcccCCccccChHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 021594 29 IACLPLGLIFSFIRRPKAVITRSQYIK-EATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 29 laalPi~lI~~f~~Rpk~~is~~e~~~-~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
++|+|+...+. |+++.+-| .+.++.++-.++.++..+.++.
T Consensus 52 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (324)
T PLN00171 52 FSAIPFTAVKA--------IANSSLGESLQRRLEETKKAAVEESSAFKAA 93 (324)
T ss_pred eecccHHHHHH--------HhcCcHHHHHHHHHHHhhHHHHHhHHHHHHH
Confidence 57899999998 77777755 5555666655666655555543
No 236
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=21.42 E-value=8.6e+02 Score=24.61 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021594 55 KEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 55 ~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
+..++......|.++-.+.++.
T Consensus 187 ~~~~~~~~~~~e~~~g~~~ik~ 208 (529)
T TIGR02868 187 RLRSQLYQQLTDALDGAADLVA 208 (529)
T ss_pred HHHHHHHHHHHHHhccHHHHHH
Confidence 3334444444444444444443
No 237
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=21.37 E-value=4.8e+02 Score=22.35 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=28.9
Q ss_pred cChHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCCh-----hhhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 48 ITRSQYIKEATELGKKAR-ELKKAADTLHQEERSGSKGR-----KWRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~-~Lle~~~~lq~~~~~g~~~~-----k~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
+|..-+++.+.+++..-. +--+..++++.-+..|.++. ..+.+...+.++.+.|+++...++.
T Consensus 7 lt~~g~~~L~~eL~~l~~~~r~~~~~~~~~A~~~gdl~En~~y~~a~~~~~~~~~ri~~l~~~L~~a~i 75 (157)
T PRK00226 7 MTQEGYEKLEEELEELKTVERPEIIEAIAEAREHGDLSENAEYHAAKEEQGFIEGRIRELEDKLSNAEV 75 (157)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHHHHHhCee
Confidence 565555554444433321 22234444554444553321 1233444556666666665555443
No 238
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.37 E-value=5e+02 Score=26.16 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 021594 90 NVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+.++++++...|+.+.+.+++.
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~ 98 (418)
T TIGR00414 77 ELKELKEELTELSAALKALEAE 98 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666555554
No 239
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.36 E-value=5.1e+02 Score=21.99 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 021594 88 RKNVKSVEKELLQLEEDVKLLE 109 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le 109 (310)
++++..+++.+.....|...+.
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444444444444333
No 240
>PF14182 YgaB: YgaB-like protein
Probab=21.29 E-value=4.1e+02 Score=20.90 Aligned_cols=37 Identities=14% Similarity=0.388 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhhhHHHHHH
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEEMYPQGEKAETSWALTVLGYL 130 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~y~~~~~~~~~~~~~vl~~~ 130 (310)
+..++...+.|.+..+++.+.+.+.|+++-. .|++.|
T Consensus 38 ~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTe-------eVI~sy 74 (79)
T PF14182_consen 38 REAELHSIQEEISQMKKELKEIQRVFEKQTE-------EVIRSY 74 (79)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 4567888888888888888888887664422 566664
No 241
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.18 E-value=5.5e+02 Score=22.28 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhc
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEEMY 112 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~y 112 (310)
.+.++..+++++..|+++++.++...
T Consensus 150 ~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 150 TKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566788888888888888888763
No 242
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.18 E-value=2.6e+02 Score=26.86 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 57 ATELGKKARELKKAADTLHQE----ERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 57 ~~~i~~~a~~Lle~~~~lq~~----~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+..++++-+.++|.-+.|-+. +.++.+.++.|..++.|+++.+..-+....|+.+
T Consensus 238 kk~L~qkdq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~s 296 (305)
T KOG3990|consen 238 KKLLHQKDQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRNS 296 (305)
T ss_pred HHHHhhhHHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444444455544444431 1111223334444556666655555555555543
No 243
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=21.09 E-value=1.8e+02 Score=27.50 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=14.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
++-+.+.+++.+|+++.+++.|+.++-++
T Consensus 204 V~td~L~keAe~i~~~lekl~eq~~~~~~ 232 (244)
T COG1938 204 VDTDKLEKEAEEIEEQLEKLAEQLEKEEE 232 (244)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555544443
No 244
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=21.00 E-value=4.8e+02 Score=22.92 Aligned_cols=23 Identities=39% Similarity=0.731 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLE 109 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le 109 (310)
++.+-+.++..+..|+.+.+.|+
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666
No 245
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=20.97 E-value=1.1e+02 Score=22.72 Aligned_cols=25 Identities=32% Similarity=0.447 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
-|.|++-++.....|+++.++||..
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~E 36 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEE 36 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888775
No 246
>PRK11637 AmiB activator; Provisional
Probab=20.97 E-value=3.2e+02 Score=27.25 Aligned_cols=17 Identities=6% Similarity=0.245 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021594 90 NVKSVEKELLQLEEDVK 106 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~~ 106 (310)
+++++++++..|+....
T Consensus 234 ~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 234 QLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 247
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.91 E-value=3.5e+02 Score=29.03 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021594 53 YIKEATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 53 ~~~~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
+.++.+.+..+.+++..+..+++++
T Consensus 434 l~~e~~~L~~~~ee~k~eie~L~~~ 458 (652)
T COG2433 434 LEEENSELKRELEELKREIEKLESE 458 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666654
No 248
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=20.88 E-value=2.3e+02 Score=26.84 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 021594 90 NVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+...++|++..|++|...||+.
T Consensus 196 ~~~~lrrQi~klnrRl~~lE~~ 217 (246)
T PF05644_consen 196 DAASLRRQIIKLNRRLQALEEE 217 (246)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3448999999999999999997
No 249
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.87 E-value=1.3e+02 Score=26.72 Aligned_cols=25 Identities=44% Similarity=0.518 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+.+.++.++.+...|+.+.+.++..
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~ 138 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEE 138 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444
No 250
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=20.86 E-value=2.8e+02 Score=27.62 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHH
Q 021594 63 KARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQL 101 (310)
Q Consensus 63 ~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~L 101 (310)
|-+++..+-+++|+++++. ++|..+-++.++|..+|
T Consensus 161 km~~lqPel~~Iq~Kyk~~---~~d~~~~~k~q~e~~~L 196 (357)
T PRK02201 161 KQEELQGKKAKIDAKYKDY---KKDKQMKQRKQQEIQEL 196 (357)
T ss_pred HHHHhhHHHHHHHHHHhcc---cCCHHHHHHHHHHHHHH
Confidence 3455666677777766422 24555555666665555
No 251
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=20.73 E-value=7e+02 Score=24.56 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=50.1
Q ss_pred hhhhhhHHHHhhcccCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 021594 28 GIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKL 107 (310)
Q Consensus 28 GlaalPi~lI~~f~~Rpk~~is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~ 107 (310)
+...+|-|. + .-+.+++ =+.+++.+..+++.++.+.+-++-.+++.+..... ...+-....+++-++..+.+-.+-
T Consensus 151 ~ckLFP~DV-q-i~S~~~l-PD~seLe~~~s~~sk~Lq~lqq~v~~Lask~~y~p-d~~~~e~~~~Lr~~L~tflq~~~~ 226 (325)
T PF06694_consen 151 ECKLFPPDV-Q-IQSIYPL-PDVSELEKKASELSKQLQSLQQQVAELASKHPYNP-DEEYVEKESQLRLELETFLQTAAG 226 (325)
T ss_pred hcCcCCHHH-h-hccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-chhhHHHHHHHHHHHHHHHHHHHH
Confidence 566788884 3 2233333 34555555555555555555555566665543221 111224455688888888888888
Q ss_pred HHhhcccCcc
Q 021594 108 LEEMYPQGEK 117 (310)
Q Consensus 108 le~~y~~~~~ 117 (310)
....|++.-+
T Consensus 227 F~~~Y~~EIr 236 (325)
T PF06694_consen 227 FNHCYEKEIR 236 (325)
T ss_pred HHHHHHhcch
Confidence 8888886554
No 252
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.70 E-value=5.4e+02 Score=23.96 Aligned_cols=25 Identities=16% Similarity=0.229 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 52 QYIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 52 e~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
+|...+.+|.+..+.+.+..+-|++
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e 36 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEE 36 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554444444444443
No 253
>COG4920 Predicted membrane protein [Function unknown]
Probab=20.67 E-value=4.2e+02 Score=24.78 Aligned_cols=33 Identities=9% Similarity=0.199 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHhhcccCC
Q 021594 12 LATIVGSVLFSIFGGVGIACLPLGLIFSFIRRP 44 (310)
Q Consensus 12 ~l~~iG~~lfv~y~gvGlaalPi~lI~~f~~Rp 44 (310)
+++++|--++-++.=+=+.-+-++-+-+-++.|
T Consensus 23 vlsffp~~f~tf~ilyilf~~glsiVm~~RSnp 55 (249)
T COG4920 23 VLSFFPAEFFTFLILYILFFFGLSIVMGLRSNP 55 (249)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 344555444444444444444455566666655
No 254
>PRK06286 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.65 E-value=1.2e+02 Score=24.44 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 021594 4 TFPEYVVALATIVGSVLFSIFGGVGIACLPLGL 36 (310)
Q Consensus 4 sf~~f~i~~l~~iG~~lfv~y~gvGlaalPi~l 36 (310)
-+...+++.+..+|.++..+ |++|+.-+|=|+
T Consensus 3 ~~~~ii~~illiiG~~f~l~-gaiGllRlPD~~ 34 (91)
T PRK06286 3 QFVGIIQDILLIIASIGILI-ASIRLWRVEKDR 34 (91)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHhheeCCCcc
Confidence 34566778888888765554 999999998655
No 255
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.64 E-value=5.5e+02 Score=22.08 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
-+.++..++++...|+.+...|...
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4678889999999999999888875
No 256
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.59 E-value=3.2e+02 Score=25.08 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 021594 223 FLFNVGLILLCSISVIQFCS 242 (310)
Q Consensus 223 lLfn~~Llll~s~av~qFc~ 242 (310)
.-|.-++.+|. -.|.|.|.
T Consensus 255 ~~f~~~v~lLn-~nI~~L~~ 273 (302)
T PF10186_consen 255 QRFEYAVFLLN-KNIAQLCF 273 (302)
T ss_pred HHHHHHHHHHH-HHHHHHHH
Confidence 34444444332 34444444
No 257
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.46 E-value=2e+02 Score=28.60 Aligned_cols=27 Identities=15% Similarity=0.002 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHhh
Q 021594 13 ATIVGSVLFSIFGGVGIACLPLGLIFS 39 (310)
Q Consensus 13 l~~iG~~lfv~y~gvGlaalPi~lI~~ 39 (310)
+..++..++-+...++++.+++..+--
T Consensus 183 ~~~~~~~~~~l~~~~~~~~~via~~D~ 209 (359)
T PRK05702 183 LGHALDLVLKLLLLVVLALLVIAAIDV 209 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566666666655543
No 258
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=20.29 E-value=1.1e+02 Score=24.68 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=18.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh
Q 021594 3 TTFPEYVVALATIVGSVLFSIFG 25 (310)
Q Consensus 3 vsf~~f~i~~l~~iG~~lfv~y~ 25 (310)
.|..-|++|.+.++|.++|.-|+
T Consensus 48 lSii~FIlG~vl~lGilifs~y~ 70 (91)
T PHA02680 48 LSVTCFIVGAVLLLGLFVFSMYR 70 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667999999999977766665
No 259
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=20.24 E-value=6.1e+02 Score=22.41 Aligned_cols=6 Identities=17% Similarity=0.639 Sum_probs=2.3
Q ss_pred hhhhhh
Q 021594 27 VGIACL 32 (310)
Q Consensus 27 vGlaal 32 (310)
+|+++.
T Consensus 39 ~~~~~~ 44 (199)
T PF10112_consen 39 IGAVAF 44 (199)
T ss_pred HHHHHH
Confidence 333333
No 260
>PRK10132 hypothetical protein; Provisional
Probab=20.23 E-value=5e+02 Score=21.38 Aligned_cols=28 Identities=7% Similarity=0.233 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 49 TRSQYIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 49 s~~e~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
+.+++.+++.++..+.+.|.+..+++-+
T Consensus 6 ~~~~~~~q~e~L~~Dl~~L~~~le~ll~ 33 (108)
T PRK10132 6 NRNDVDDGVQDIQNDVNQLADSLESVLK 33 (108)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888888888888777765
No 261
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.10 E-value=3.1e+02 Score=26.67 Aligned_cols=18 Identities=17% Similarity=0.184 Sum_probs=7.2
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 021594 49 TRSQYIKEATELGKKARE 66 (310)
Q Consensus 49 s~~e~~~~~~~i~~~a~~ 66 (310)
+.+++.+.+.++.+.-.+
T Consensus 202 d~~eL~~lk~~l~~~~~e 219 (312)
T smart00787 202 DPTELDRAKEKLKKLLQE 219 (312)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
Done!