Query 021594
Match_columns 310
No_of_seqs 127 out of 135
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 06:25:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021594.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021594hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yy0_A C-MYC-binding protein; 87.2 0.85 2.9E-05 32.0 4.5 44 33-77 3-48 (53)
2 2w6a_A ARF GTPase-activating p 82.7 5.5 0.00019 28.6 7.0 38 33-77 2-42 (63)
3 3s9g_A Protein hexim1; cyclin 77.8 12 0.00042 29.4 8.2 57 48-110 30-86 (104)
4 2f23_A Anti-cleavage anti-GREA 74.7 17 0.00057 30.3 9.0 60 48-107 7-71 (156)
5 3b5x_A Lipid A export ATP-bind 72.7 71 0.0024 31.6 14.5 31 8-38 146-181 (582)
6 3rvy_A ION transport protein; 68.2 2.6 8.8E-05 37.9 2.6 24 20-43 218-241 (285)
7 3pjs_K KCSA, voltage-gated pot 67.5 7.7 0.00026 32.4 5.3 24 21-44 100-123 (166)
8 3hd7_A Vesicle-associated memb 61.2 51 0.0018 25.0 12.4 25 52-76 13-37 (91)
9 3eff_K Voltage-gated potassium 58.0 16 0.00056 29.3 5.4 23 20-42 72-94 (139)
10 2yl4_A ATP-binding cassette SU 57.6 1.5E+02 0.0052 29.3 14.3 12 27-38 167-178 (595)
11 2oxj_A Hybrid alpha/beta pepti 57.2 9.9 0.00034 24.2 3.0 22 56-77 2-23 (34)
12 4a82_A Cystic fibrosis transme 54.7 1.7E+02 0.0057 28.9 13.6 31 9-39 143-178 (578)
13 3b60_A Lipid A export ATP-bind 54.3 1.4E+02 0.0049 29.4 12.7 31 7-37 145-180 (582)
14 2bni_A General control protein 53.2 11 0.00038 24.0 2.8 22 56-77 2-23 (34)
15 1rh5_B Preprotein translocase 51.8 28 0.00096 25.8 5.3 29 131-162 44-72 (74)
16 3c3f_A Alpha/beta peptide with 50.3 15 0.0005 23.4 2.9 22 56-77 2-23 (34)
17 4f4c_A Multidrug resistance pr 50.1 2.1E+02 0.0071 31.5 14.1 36 6-41 215-255 (1321)
18 3mky_B Protein SOPB; partition 48.4 23 0.00079 30.9 5.1 54 26-81 62-115 (189)
19 2lw1_A ABC transporter ATP-bin 48.2 21 0.00071 26.9 4.3 56 56-111 23-78 (89)
20 2p4v_A Transcription elongatio 47.1 88 0.003 26.0 8.4 60 48-107 6-71 (158)
21 1lrz_A FEMA, factor essential 46.6 73 0.0025 30.2 8.9 56 54-109 246-301 (426)
22 4h22_A Leucine-rich repeat fli 46.3 50 0.0017 26.1 6.2 64 48-111 16-80 (103)
23 3m48_A General control protein 42.9 19 0.00064 22.8 2.6 21 57-77 2-22 (33)
24 3c3g_A Alpha/beta peptide with 42.4 23 0.00079 22.4 2.9 21 57-77 2-22 (33)
25 3oja_B Anopheles plasmodium-re 41.3 78 0.0027 30.9 8.4 23 89-111 558-580 (597)
26 3hnw_A Uncharacterized protein 40.9 1.3E+02 0.0045 24.6 8.4 26 86-111 107-132 (138)
27 3q8t_A Beclin-1; autophagy, AT 40.2 1.2E+02 0.0042 23.1 7.9 28 86-113 57-84 (96)
28 1uo4_A General control protein 40.2 24 0.00081 22.5 2.8 22 56-77 2-23 (34)
29 3qf4_B Uncharacterized ABC tra 40.1 2.8E+02 0.0095 27.4 12.3 33 7-39 157-194 (598)
30 3he5_B Synzip2; heterodimeric 39.8 37 0.0013 22.8 3.8 23 88-110 9-31 (52)
31 3oja_B Anopheles plasmodium-re 39.3 56 0.0019 31.9 6.9 24 53-76 507-530 (597)
32 2kog_A Vesicle-associated memb 38.2 34 0.0012 27.4 4.3 8 93-100 79-86 (119)
33 1kd8_B GABH BLL, GCN4 acid bas 37.7 29 0.001 22.3 2.9 22 56-77 2-23 (36)
34 3lay_A Zinc resistance-associa 37.1 1.1E+02 0.0037 26.1 7.5 26 84-109 108-133 (175)
35 3qf4_A ABC transporter, ATP-bi 36.8 3.2E+02 0.011 26.9 13.9 30 9-38 145-179 (587)
36 1grj_A GREA protein; transcrip 36.5 1.5E+02 0.0052 24.4 8.2 61 48-108 6-72 (158)
37 2l5g_B Putative uncharacterize 35.2 52 0.0018 21.9 4.0 21 91-111 18-38 (42)
38 4gc0_A D-xylose-proton symport 33.9 2.7E+02 0.0093 25.3 10.9 28 281-309 448-475 (491)
39 1l4a_A Synaptobrevin; snare, s 33.2 1.1E+02 0.0038 22.5 6.1 45 52-96 23-71 (80)
40 4ev6_A Magnesium transport pro 33.0 39 0.0013 31.1 4.4 40 226-274 276-315 (339)
41 2dq0_A Seryl-tRNA synthetase; 33.0 1.8E+02 0.0061 28.3 9.3 24 88-111 75-98 (455)
42 3qne_A Seryl-tRNA synthetase, 33.0 1.8E+02 0.0061 28.7 9.3 24 88-111 77-100 (485)
43 4i0x_B ESAT-6-like protein MAB 32.7 1E+02 0.0035 23.1 6.1 72 48-119 11-97 (103)
44 2w83_C C-JUN-amino-terminal ki 31.9 1.5E+02 0.0053 22.1 6.6 56 50-111 18-73 (77)
45 4dzo_A Mitotic spindle assembl 31.8 43 0.0015 27.0 3.9 26 89-114 4-29 (123)
46 3sjb_C Golgi to ER traffic pro 30.3 1.8E+02 0.0062 22.4 7.0 26 86-111 53-78 (93)
47 4h33_A LMO2059 protein; bilaye 29.6 35 0.0012 27.5 3.0 24 20-43 75-98 (137)
48 1hjb_A Ccaat/enhancer binding 29.0 1.6E+02 0.0054 22.3 6.4 23 89-111 50-72 (87)
49 2hy6_A General control protein 28.0 50 0.0017 21.0 2.8 21 57-77 3-23 (34)
50 2iub_A CORA, divalent cation t 28.0 41 0.0014 31.4 3.6 52 226-290 300-351 (363)
51 2dq3_A Seryl-tRNA synthetase; 27.7 1.7E+02 0.0059 28.0 8.1 24 88-111 74-97 (425)
52 1a93_B MAX protein, coiled coi 27.2 37 0.0013 21.6 2.1 23 87-109 12-34 (34)
53 2f95_B Sensory rhodopsin II tr 27.1 31 0.0011 27.0 2.3 17 94-110 128-144 (163)
54 3fav_B ESAT-6, 6 kDa early sec 26.9 1.8E+02 0.0061 20.9 7.6 71 48-118 5-88 (94)
55 3b5n_A Synaptobrevin homolog 1 26.5 99 0.0034 21.5 4.6 27 51-77 9-35 (61)
56 1ic2_A Tropomyosin alpha chain 26.1 1.9E+02 0.0064 21.1 6.4 23 89-111 41-63 (81)
57 2wq1_A General control protein 25.6 64 0.0022 20.3 2.9 21 57-77 2-22 (33)
58 3kdq_A Uncharacterized conserv 25.2 2.4E+02 0.0082 23.4 7.5 63 49-111 78-150 (154)
59 4ioe_A Secreted protein ESXB; 24.5 1.9E+02 0.0066 20.5 8.3 31 48-78 9-39 (93)
60 3v86_A De novo design helix; c 24.2 1.1E+02 0.0036 18.0 3.5 19 90-108 8-26 (27)
61 1ez3_A Syntaxin-1A; three heli 24.1 1.5E+02 0.0051 22.8 5.8 63 52-114 51-120 (127)
62 3vou_A ION transport 2 domain 24.0 2.7E+02 0.0094 22.1 7.9 15 25-39 89-103 (148)
63 1go4_E MAD1 (mitotic arrest de 23.6 2.1E+02 0.0073 22.3 6.4 24 87-110 73-96 (100)
64 3na7_A HP0958; flagellar bioge 23.5 2.3E+02 0.0078 24.9 7.6 22 89-110 90-111 (256)
65 1n7s_A Vesicle-associated memb 23.5 1.2E+02 0.0041 21.1 4.6 25 52-76 12-36 (63)
66 1a92_A Delta antigen; leucine 23.3 1.2E+02 0.004 20.8 4.2 24 88-111 13-36 (50)
67 2lw1_A ABC transporter ATP-bin 23.2 2.3E+02 0.0079 20.9 9.0 32 81-112 14-45 (89)
68 1sfc_A VAMP 2, protein (synapt 23.2 1.1E+02 0.0037 23.5 4.6 23 54-76 40-62 (96)
69 3gwk_C SAG1039, putative uncha 22.9 2.2E+02 0.0075 20.6 9.6 70 48-117 8-90 (98)
70 2w6b_A RHO guanine nucleotide 22.9 2E+02 0.0068 20.1 5.4 10 67-76 15-24 (56)
71 3hnw_A Uncharacterized protein 22.7 1.6E+02 0.0056 24.0 5.9 22 89-110 103-124 (138)
72 1ses_A Seryl-tRNA synthetase; 22.6 2.9E+02 0.01 26.4 8.6 23 89-111 71-93 (421)
73 4h33_A LMO2059 protein; bilaye 22.3 2.9E+02 0.01 21.8 8.2 73 218-294 14-92 (137)
74 3a7p_A Autophagy protein 16; c 22.1 3.5E+02 0.012 22.6 7.9 23 89-111 103-125 (152)
75 3m9b_A Proteasome-associated A 21.8 1E+02 0.0036 27.9 4.8 27 84-110 70-96 (251)
76 3efg_A Protein SLYX homolog; x 21.3 2.1E+02 0.0072 21.0 5.7 58 48-111 7-64 (78)
77 1kd8_A GABH AIV, GCN4 acid bas 20.9 60 0.002 20.8 2.2 20 57-76 3-22 (36)
78 3zbh_A ESXA; unknown function, 20.8 2.4E+02 0.008 20.2 7.7 70 48-117 9-91 (99)
79 3bhp_A UPF0291 protein YNZC; N 20.8 1.6E+02 0.0054 21.0 4.6 33 66-98 5-37 (60)
80 2yy0_A C-MYC-binding protein; 20.6 1.2E+02 0.0043 20.7 4.0 23 88-110 25-47 (53)
81 4dyl_A Tyrosine-protein kinase 20.6 4.1E+02 0.014 24.9 9.1 70 50-119 315-396 (406)
82 3u06_A Protein claret segregat 20.5 2.6E+02 0.0089 26.8 7.7 28 50-77 5-32 (412)
83 3ra3_B P2F; coiled coil domain 20.4 1E+02 0.0036 18.2 3.0 21 89-109 7-27 (28)
84 3gwk_C SAG1039, putative uncha 20.3 1.7E+02 0.0059 21.2 5.2 24 52-75 19-42 (98)
No 1
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=87.23 E-value=0.85 Score=32.01 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=25.5
Q ss_pred hHHHHhhccc--CCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021594 33 PLGLIFSFIR--RPKAVITRSQYIKEATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 33 Pi~lI~~f~~--Rpk~~is~~e~~~~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
|+|+|+...+ -|.. .+.+.+..+..++..|.++|.++.++++++
T Consensus 3 AlefIk~~LG~~~p~~-~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 3 ALDFLKHHLGAATPEN-PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp -------------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999988 7766 666667778888888888888888888764
No 2
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=82.67 E-value=5.5 Score=28.58 Aligned_cols=38 Identities=32% Similarity=0.467 Sum_probs=25.2
Q ss_pred hHHHHhhcccCCccccChHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 021594 33 PLGLIFSFIRRPKAVITRSQYIKEATELG---KKARELKKAADTLHQE 77 (310)
Q Consensus 33 Pi~lI~~f~~Rpk~~is~~e~~~~~~~i~---~~a~~Lle~~~~lq~~ 77 (310)
|+|+--+ | |+-.||-|-|+.++ .|.++|++.+..+.++
T Consensus 2 ~~dlsDg------p-it~qeylevK~ALaaSeAkiQQLmkVN~~ls~E 42 (63)
T 2w6a_A 2 PLGSSDG------A-VTLQEYLELKKALATSEAKVQQLMKVNSSLSDE 42 (63)
T ss_dssp CCC--CC------S-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCC------c-chHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHH
Confidence 5566555 4 89999988665553 4677888888777653
No 3
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=77.84 E-value=12 Score=29.41 Aligned_cols=57 Identities=25% Similarity=0.348 Sum_probs=43.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
+|++|+..+=.++.++...+-+.++.+|... ...-..++.|+.|++.|.++...|-.
T Consensus 30 mSKqELIqEYl~LE~~~s~le~e~~rlr~~~------~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 30 MSKQELIKEYLELEKSLSRMEDENNRLRLES------KRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 8899998888888999999988888887742 22235777888888888887666544
No 4
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=74.68 E-value=17 Score=30.30 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=40.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCh-----hhhHHHHHHHHHHHHHHHHHHH
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGR-----KWRKNVKSVEKELLQLEEDVKL 107 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~-----k~rr~l~~l~~~~~~Le~~~~~ 107 (310)
+|..-+.+.+.+++.+..+.-+..++++.-+..|-++. ..|.+...+++..+.|+++.+.
T Consensus 7 ~T~~g~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~ 71 (156)
T 2f23_A 7 LTKAGYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSR 71 (156)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888999888998888888888999998877774431 1233344444455555544444
No 5
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=72.66 E-value=71 Score=31.60 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH-----hhhhhhhhhHHHHh
Q 021594 8 YVVALATIVGSVLFSIF-----GGVGIACLPLGLIF 38 (310)
Q Consensus 8 f~i~~l~~iG~~lfv~y-----~gvGlaalPi~lI~ 38 (310)
.+.+.+++++.+.++++ +-+.++.+|+-.+-
T Consensus 146 ~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~ 181 (582)
T 3b5x_A 146 IVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFA 181 (582)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33344444444444333 22344555655543
No 6
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=68.25 E-value=2.6 Score=37.94 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=18.5
Q ss_pred HHHHHhhhhhhhhhHHHHhhcccC
Q 021594 20 LFSIFGGVGIACLPLGLIFSFIRR 43 (310)
Q Consensus 20 lfv~y~gvGlaalPi~lI~~f~~R 43 (310)
.|++.+|+++.++|+..|-+...+
T Consensus 218 ~~~~i~~~~~lnl~~aii~~~f~~ 241 (285)
T 3rvy_A 218 PFIFVVTFVMINLVVAICVDAMAI 241 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778999999999999886653
No 7
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=67.50 E-value=7.7 Score=32.43 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=17.8
Q ss_pred HHHHhhhhhhhhhHHHHhhcccCC
Q 021594 21 FSIFGGVGIACLPLGLIFSFIRRP 44 (310)
Q Consensus 21 fv~y~gvGlaalPi~lI~~f~~Rp 44 (310)
+....|+++.+++++.+-+...++
T Consensus 100 ~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 100 VVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp HHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888899999888866643
No 8
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=61.20 E-value=51 Score=24.97 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 52 QYIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 52 e~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
|..|.+....+-.++++|.|+.++.
T Consensus 13 ev~evk~iM~~NI~kvL~RgekL~~ 37 (91)
T 3hd7_A 13 QVDEVVDIMRVNVDKVLERDQKLSE 37 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHH
Confidence 3444444444445555555555544
No 9
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=57.99 E-value=16 Score=29.27 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=16.5
Q ss_pred HHHHHhhhhhhhhhHHHHhhccc
Q 021594 20 LFSIFGGVGIACLPLGLIFSFIR 42 (310)
Q Consensus 20 lfv~y~gvGlaalPi~lI~~f~~ 42 (310)
.+....|+++.+++++.+-+...
T Consensus 72 ~~~~~~G~~~~~~~~~~i~~~~~ 94 (139)
T 3eff_K 72 VVVMVAGITSFGLVTAALATWFV 94 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888899988887543
No 10
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=57.55 E-value=1.5e+02 Score=29.25 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=5.9
Q ss_pred hhhhhhhHHHHh
Q 021594 27 VGIACLPLGLIF 38 (310)
Q Consensus 27 vGlaalPi~lI~ 38 (310)
+.++.+|+-++-
T Consensus 167 i~l~~~~l~~~~ 178 (595)
T 2yl4_A 167 FVLSVVPPVSII 178 (595)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555655443
No 11
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=57.17 E-value=9.9 Score=24.20 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021594 56 EATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
+.+++.+|+++|+..+.+++.+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~e 23 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXE 23 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHH
Confidence 4678888999999998888864
No 12
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=54.65 E-value=1.7e+02 Score=28.86 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHH-----hhhhhhhhhHHHHhh
Q 021594 9 VVALATIVGSVLFSIF-----GGVGIACLPLGLIFS 39 (310)
Q Consensus 9 ~i~~l~~iG~~lfv~y-----~gvGlaalPi~lI~~ 39 (310)
+.+.+.+++.+..+++ +.++++.+|+-++-.
T Consensus 143 ~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~ 178 (578)
T 4a82_A 143 WLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTV 178 (578)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443 334445556654443
No 13
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=54.28 E-value=1.4e+02 Score=29.35 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh-----hhhhhhhHHHH
Q 021594 7 EYVVALATIVGSVLFSIFGG-----VGIACLPLGLI 37 (310)
Q Consensus 7 ~f~i~~l~~iG~~lfv~y~g-----vGlaalPi~lI 37 (310)
..+.+.+++++.+..+++.+ +.++.+|+-.+
T Consensus 145 ~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~ 180 (582)
T 3b60_A 145 TVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSI 180 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34445555555555544433 33444555444
No 14
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=53.19 E-value=11 Score=23.96 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021594 56 EATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
+++++.+|.++|+..+.+++.+
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~E 23 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNE 23 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHH
Confidence 5678888999999998888874
No 15
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=51.80 E-value=28 Score=25.85 Aligned_cols=29 Identities=34% Similarity=0.694 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 021594 131 AKLVLGILGFIVSVAWVAHIVIYLLINPPLHP 162 (310)
Q Consensus 131 ~kLl~Gii~lllSi~w~i~iil~~i~~~~~~~ 162 (310)
+-++.|++..++-+ +|+.+.++.+||..|
T Consensus 44 G~~imG~IGfiIkl---i~ipIn~ii~~~~~~ 72 (74)
T 1rh5_B 44 GISLLGIIGYIIHV---PATYIKGILKPPTTP 72 (74)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHH---HHHHHhcccCCCCCC
Confidence 55677777777665 788899999886544
No 16
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=50.33 E-value=15 Score=23.39 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021594 56 EATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
+++++.+|.++|+..+.+++.+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~E 23 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENE 23 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHH
Confidence 4678888888888888888764
No 17
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=50.06 E-value=2.1e+02 Score=31.52 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-----hhhhhhhhhHHHHhhcc
Q 021594 6 PEYVVALATIVGSVLFSIF-----GGVGIACLPLGLIFSFI 41 (310)
Q Consensus 6 ~~f~i~~l~~iG~~lfv~y-----~gvGlaalPi~lI~~f~ 41 (310)
+..+.++++++|.+...++ +.+.++.+|+-.+-...
T Consensus 215 ~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~ 255 (1321)
T 4f4c_A 215 GMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFA 255 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666655554 34566777877665543
No 18
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=48.44 E-value=23 Score=30.92 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=37.8
Q ss_pred hhhhhhhhHHHHhhcccCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 021594 26 GVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADTLHQEERSG 81 (310)
Q Consensus 26 gvGlaalPi~lI~~f~~Rpk~~is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g 81 (310)
..-.|.||-++|..|++ |.- ++...+........+..+.+.+..+.+.++..+|
T Consensus 62 ~L~~A~LP~~lv~~fp~-p~d-Ls~~~~~~L~k~~~~~~~ll~~~a~~l~e~~~~G 115 (189)
T 3mky_B 62 CINTAKLPKSVVALFSH-PGE-LSARSGDALQKAFTDKEELLKQQASNLHEQKKAG 115 (189)
T ss_dssp HHHHHHSCHHHHHTSSS-GGG-SCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHcCC-HHh-cCchhHHHHHHHHhccHHHHHHHHHHHHHHhccC
Confidence 35678999999999986 888 9988887765555555555555555555444455
No 19
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.22 E-value=21 Score=26.93 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 56 EATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+-..+..+..+|-+...+++..-++......|-.++..+.++...++.+...+.+.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666655554433345556666666666666665555543
No 20
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=47.09 E-value=88 Score=25.95 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=33.3
Q ss_pred cChHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCCChh-----hhHHHHHHHHHHHHHHHHHHH
Q 021594 48 ITRSQYIKEATELGKK-ARELKKAADTLHQEERSGSKGRK-----WRKNVKSVEKELLQLEEDVKL 107 (310)
Q Consensus 48 is~~e~~~~~~~i~~~-a~~Lle~~~~lq~~~~~g~~~~k-----~rr~l~~l~~~~~~Le~~~~~ 107 (310)
+|..-+.+.+.+++.- ..+--+..++++.-+..|-.|.- .|++...++++.+.|+++.+.
T Consensus 6 lT~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~ 71 (158)
T 2p4v_A 6 VTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMEN 71 (158)
T ss_dssp ECHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777766666554 34555666777776666744311 233444444555555444433
No 21
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=46.63 E-value=73 Score=30.19 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 021594 54 IKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLE 109 (310)
Q Consensus 54 ~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le 109 (310)
.+..+.++++.+++.++-.+++++..+...+.|.+++++.++++...++++..+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 301 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGK 301 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666665544454567778888888888888888777664
No 22
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=46.26 E-value=50 Score=26.11 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=37.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChh-hhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRK-WRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k-~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+|.+|+..+|+.+.=..+-|.+.-++.++.-.+-.+..+ -.|+++++++....|..+...+...
T Consensus 16 VsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 16 VSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777666766666666666666665553222211112 2356777777777777777666655
No 23
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=42.87 E-value=19 Score=22.80 Aligned_cols=21 Identities=29% Similarity=0.272 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 021594 57 ATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 57 ~~~i~~~a~~Lle~~~~lq~~ 77 (310)
++++.+|+++|++.+.+++.+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~E 22 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENE 22 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHH
Confidence 456777888888888877764
No 24
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=42.41 E-value=23 Score=22.35 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 021594 57 ATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 57 ~~~i~~~a~~Lle~~~~lq~~ 77 (310)
.+++.+|.++|+..+.+++.+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~E 22 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENX 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHH
Confidence 467788888888888888764
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.30 E-value=78 Score=30.85 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021594 89 KNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+.+.++++|...++.+..++++.
T Consensus 558 ~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 558 AKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.91 E-value=1.3e+02 Score=24.56 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
..++++.+++++...|+++...||..
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777778888887777777654
No 27
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=40.18 E-value=1.2e+02 Score=23.14 Aligned_cols=28 Identities=14% Similarity=0.464 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021594 86 KWRKNVKSVEKELLQLEEDVKLLEEMYP 113 (310)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~y~ 113 (310)
+.+++++.++++...++++...++..|+
T Consensus 57 ~~w~eyn~~~~ql~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 57 QYQREYSEFKRQQLELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777776543
No 28
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=40.16 E-value=24 Score=22.46 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021594 56 EATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
+++++.+|.++|+..+.+++.+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~E 23 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENE 23 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHH
Confidence 3567888888888888888764
No 29
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=40.10 E-value=2.8e+02 Score=27.43 Aligned_cols=33 Identities=18% Similarity=0.477 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHH-----hhhhhhhhhHHHHhh
Q 021594 7 EYVVALATIVGSVLFSIF-----GGVGIACLPLGLIFS 39 (310)
Q Consensus 7 ~f~i~~l~~iG~~lfv~y-----~gvGlaalPi~lI~~ 39 (310)
..+.+.+.+++.+.++++ +-+.++.+|+-++-.
T Consensus 157 ~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~ 194 (598)
T 3qf4_B 157 QFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLIT 194 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555443 334555666655443
No 30
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=39.79 E-value=37 Score=22.82 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 021594 88 RKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
|++..++++.--+||+|++.||.
T Consensus 9 rkkiarlkkdnlqlerdeqnlek 31 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEK 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHH
Confidence 44444555555555555555444
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.28 E-value=56 Score=31.91 Aligned_cols=24 Identities=13% Similarity=0.005 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 53 YIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 53 ~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
+.++.+++.++.+++.+..++.++
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~ 530 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRT 530 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHH
Confidence 344444555555555544444443
No 32
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=38.17 E-value=34 Score=27.41 Aligned_cols=8 Identities=13% Similarity=0.140 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 021594 93 SVEKELLQ 100 (310)
Q Consensus 93 ~l~~~~~~ 100 (310)
++++.-+.
T Consensus 79 ~F~k~A~k 86 (119)
T 2kog_A 79 QFETSAAK 86 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 33
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=37.65 E-value=29 Score=22.27 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021594 56 EATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 56 ~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
+.+++.++.++|+....+++.+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~e 23 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNK 23 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHH
Confidence 3567777777777777777653
No 34
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=37.08 E-value=1.1e+02 Score=26.12 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=17.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHH
Q 021594 84 GRKWRKNVKSVEKELLQLEEDVKLLE 109 (310)
Q Consensus 84 ~~k~rr~l~~l~~~~~~Le~~~~~le 109 (310)
.+-|..+++++.+|...|+.+.+...
T Consensus 108 ~~~DeakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 108 SSPDTAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34477778888777777776655433
No 35
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=36.84 E-value=3.2e+02 Score=26.94 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHh-----hhhhhhhhHHHHh
Q 021594 9 VVALATIVGSVLFSIFG-----GVGIACLPLGLIF 38 (310)
Q Consensus 9 ~i~~l~~iG~~lfv~y~-----gvGlaalPi~lI~ 38 (310)
+.+.+++++.+.+.++. .+.++.+|+-.+-
T Consensus 145 ~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~ 179 (587)
T 3qf4_A 145 VRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLL 179 (587)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555554443 3455566655443
No 36
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=36.49 E-value=1.5e+02 Score=24.43 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=32.5
Q ss_pred cChHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCChh-----hhHHHHHHHHHHHHHHHHHHHH
Q 021594 48 ITRSQYIKEATELGKKAR-ELKKAADTLHQEERSGSKGRK-----WRKNVKSVEKELLQLEEDVKLL 108 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~-~Lle~~~~lq~~~~~g~~~~k-----~rr~l~~l~~~~~~Le~~~~~l 108 (310)
+|..-+.+.+.+++.--. +--+..++++.-+..|-.+.- .|++...+++..+.|+++.+.+
T Consensus 6 ~T~~g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a 72 (158)
T 1grj_A 6 MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNA 72 (158)
T ss_dssp EEHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCHHHHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 677777766666554422 445566677666666644311 2333444445555555544443
No 37
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.24 E-value=52 Score=21.87 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 021594 91 VKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 91 l~~l~~~~~~Le~~~~~le~~ 111 (310)
..+-+++...|..+++.||++
T Consensus 18 I~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 18 ITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444443
No 38
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=33.94 E-value=2.7e+02 Score=25.29 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCccccc
Q 021594 281 FVVLAGLTFVYYAAFGWRRRKPSGKFQLS 309 (310)
Q Consensus 281 ~l~~~~l~~i~~l~~~~~~~~~~~~~~~~ 309 (310)
+-++++++.++..+. -|.-|.++-+|||
T Consensus 448 ~~~~~~~~~i~~~~~-~PETkg~tLeei~ 475 (491)
T 4gc0_A 448 YGCMGVLAALFMWKF-VPETKGKTLEELE 475 (491)
T ss_dssp HHHHHHHHHHHHHHH-CCCCTTCCHHHHG
T ss_pred HHHHHHHHHHHHHhe-ecCCCCCCHHHHH
Confidence 334455555443222 2555555555554
No 39
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=33.21 E-value=1.1e+02 Score=22.45 Aligned_cols=45 Identities=2% Similarity=0.107 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--cC--CCChhhhHHHHHHHH
Q 021594 52 QYIKEATELGKKARELKKAADTLHQEER--SG--SKGRKWRKNVKSVEK 96 (310)
Q Consensus 52 e~~~~~~~i~~~a~~Lle~~~~lq~~~~--~g--~~~~k~rr~l~~l~~ 96 (310)
|+.+.+....+-.++++|.|+.|..... +. ..+...++.-+++++
T Consensus 23 el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~r 71 (80)
T 1l4a_A 23 QVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666678888888888887322 21 234445555455444
No 40
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=33.05 E-value=39 Score=31.15 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhHHHhHHHHHHHHHhcccccceeeeeh
Q 021594 226 NVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKY 274 (310)
Q Consensus 226 n~~Llll~s~av~qFc~~~f~~ya~~t~i~~~f~~~~~nl~~~~~~~~~ 274 (310)
|-.|=.|++.+++ .+.-|.+..+||--+.++|+.++-|-|
T Consensus 276 N~~mk~LTiit~I---------flP~T~IaGiyGMNf~~mPel~~~~gy 315 (339)
T 4ev6_A 276 NQIMKILTMVTTI---------FAVPMWITGIYGMNFSYLPLANNPQGF 315 (339)
T ss_dssp HHHHHHHHHHHHH---------SSHHHHHHHHTTCCCSCCTTSSCTTHH
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHhhccCcCCCCCCccCchHH
Confidence 5555566666654 345588999999999999999875544
No 41
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=33.03 E-value=1.8e+02 Score=28.28 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 88 RKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+.+.+.+++++..||.+.+.+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 75 LAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666554
No 42
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.99 E-value=1.8e+02 Score=28.74 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 88 RKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+.+.+++++++..||.+...+++.
T Consensus 77 ~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 77 IAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666655554
No 43
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=32.71 E-value=1e+02 Score=23.09 Aligned_cols=72 Identities=15% Similarity=0.273 Sum_probs=39.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hc----C-------CCChhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQEE----RS----G-------SKGRKWRKNVKSVEKELLQLEEDVKLLEEMY 112 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~----~~----g-------~~~~k~rr~l~~l~~~~~~Le~~~~~le~~y 112 (310)
++.+++.+...++...++++-+...+++..- .. | ..-.++++..+++++.+..+.+..+.....|
T Consensus 11 v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a~~~y 90 (103)
T 4i0x_B 11 FDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTAHGAY 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555421 11 1 1123566777788888888888888888888
Q ss_pred ccCccch
Q 021594 113 PQGEKAE 119 (310)
Q Consensus 113 ~~~~~~~ 119 (310)
...+..+
T Consensus 91 ~~~e~~~ 97 (103)
T 4i0x_B 91 SEAQEAN 97 (103)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 8887643
No 44
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=31.90 E-value=1.5e+02 Score=22.06 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 50 RSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 50 ~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
..|+.+++..++.-=++|+..-+++-.++ .--|-++.++++....++.+.+.+|+.
T Consensus 18 N~eLl~TKNaLnvvk~DLI~rvdELt~E~------e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 18 NTQLLETKNALNIVKNDLIAKVDELTCEK------DVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888887888888888876643 224567777777777777777777764
No 45
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=31.75 E-value=43 Score=27.03 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 021594 89 KNVKSVEKELLQLEEDVKLLEEMYPQ 114 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~~y~~ 114 (310)
++++++++++..+|.+.++|.+.|.+
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ 29 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQT 29 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888888653
No 46
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=30.27 E-value=1.8e+02 Score=22.45 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 86 KWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 86 k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
|-||+++++..|+..+......-...
T Consensus 53 KL~Rk~DKl~~ele~l~~~l~~~k~~ 78 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEIQSENKA 78 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777776665554444
No 47
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=29.60 E-value=35 Score=27.50 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=18.2
Q ss_pred HHHHHhhhhhhhhhHHHHhhcccC
Q 021594 20 LFSIFGGVGIACLPLGLIFSFIRR 43 (310)
Q Consensus 20 lfv~y~gvGlaalPi~lI~~f~~R 43 (310)
.+....|+|+.+++++.+-++...
T Consensus 75 ~~~~~~g~~~~~~~~~~i~~~~~~ 98 (137)
T 4h33_A 75 SIMMLFGIAFIGMITSTITNFFRC 98 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557888999999999887653
No 48
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.97 E-value=1.6e+02 Score=22.34 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021594 89 KNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~~ 111 (310)
++-..|+.++..|+.+...|...
T Consensus 50 ~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 50 AENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544
No 49
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=28.00 E-value=50 Score=20.96 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 021594 57 ATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 57 ~~~i~~~a~~Lle~~~~lq~~ 77 (310)
.+++.++.++|+..+.+++.+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~e 23 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANA 23 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHH
Confidence 456777777777777777653
No 50
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=27.97 E-value=41 Score=31.38 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhHHHhHHHHHHHHHhcccccceeeeehhhHHHHHHHHHHHHHH
Q 021594 226 NVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFV 290 (310)
Q Consensus 226 n~~Llll~s~av~qFc~~~f~~ya~~t~i~~~f~~~~~nl~~~~~~~~~nv~~y~~l~~~~l~~i 290 (310)
|-.|=.|++.+++- +.-|.+..+||--+.|+|+.++-|-| ++.+++++++.+
T Consensus 300 N~imk~LTiit~If---------lP~T~IaGiyGMNf~~mPel~~~~Gy----~~~l~~m~~i~~ 351 (363)
T 2iub_A 300 NEVMKVLTIIATIF---------MPLTFIAGIYGMNFEYMPELRWKWGY----PVVLAVMGVIAV 351 (363)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHTTSCC--------------C----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHhhhcccCCCCCcccCcHHH----HHHHHHHHHHHH
Confidence 55666666666553 23477788888778899999886666 344444444333
No 51
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.68 E-value=1.7e+02 Score=27.98 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 88 RKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
+.+.+.++.++..|+.+.+.+++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ 97 (425)
T 2dq3_A 74 QNRVKELKEEIDRLEEELRKVEEE 97 (425)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666555555544
No 52
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=27.17 E-value=37 Score=21.61 Aligned_cols=23 Identities=17% Similarity=0.432 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLE 109 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le 109 (310)
.+.+.+.++++-..||.+.+.||
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhHHHHHHHHHHHHHHHHhcC
Confidence 34455555555555655555543
No 53
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=27.14 E-value=31 Score=26.97 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021594 94 VEKELLQLEEDVKLLEE 110 (310)
Q Consensus 94 l~~~~~~Le~~~~~le~ 110 (310)
+++...++++..+++|.
T Consensus 128 l~~~~~~~~~~~~~~~~ 144 (163)
T 2f95_B 128 VRTSLEDAKNAREDAEQ 144 (163)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 54
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=26.89 E-value=1.8e+02 Score=20.92 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=38.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------cCCCC-------hhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQEER------SGSKG-------RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~------~g~~~-------~k~rr~l~~l~~~~~~Le~~~~~le~~y~~ 114 (310)
++.+++.....++...++++-+...+++..-. +|.-+ .++++..+++++.+..+.+..+.....|..
T Consensus 5 v~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~~y~~ 84 (94)
T 3fav_B 5 WNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQAMAS 84 (94)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777776322 13222 245566667777777777777777777887
Q ss_pred Cccc
Q 021594 115 GEKA 118 (310)
Q Consensus 115 ~~~~ 118 (310)
.+..
T Consensus 85 ~d~~ 88 (94)
T 3fav_B 85 TEGN 88 (94)
T ss_dssp ----
T ss_pred HHHH
Confidence 7753
No 55
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=26.55 E-value=99 Score=21.45 Aligned_cols=27 Identities=4% Similarity=0.064 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021594 51 SQYIKEATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 51 ~e~~~~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
.|+.|.+....+-.+++++.|+.+...
T Consensus 9 ~~l~evk~iM~~NI~~vl~RgekLd~L 35 (61)
T 3b5n_A 9 AEIDDTVGIMRDNINKVAERGERLTSI 35 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 356666777777778888888877763
No 56
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=26.15 E-value=1.9e+02 Score=21.12 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021594 89 KNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~~ 111 (310)
.++..++++...|+.+....++.
T Consensus 41 ~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666555544
No 57
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.60 E-value=64 Score=20.31 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 021594 57 ATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 57 ~~~i~~~a~~Lle~~~~lq~~ 77 (310)
++|+.+|.++|+....+++.+
T Consensus 2 MnQLEdKVEell~~~~~le~E 22 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNE 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHH
Confidence 456777777777777776653
No 58
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=25.24 E-value=2.4e+02 Score=23.45 Aligned_cols=63 Identities=27% Similarity=0.250 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCC--C-------ChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 49 TRSQYIKEATELGKKARELKKAADTLHQEE-RSGS--K-------GRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 49 s~~e~~~~~~~i~~~a~~Lle~~~~lq~~~-~~g~--~-------~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
|-.|.-+.+.++..+...+.+.+.+=..+. +.++ . -.+.|++.+++.++.|.|+...+.+.+.
T Consensus 78 tl~eaia~rd~L~~~~~~l~~~~~~a~~~~~rys~sEIk~vs~vdv~~~qk~ad~l~k~~r~Ld~~IQ~~Nw~ 150 (154)
T 3kdq_A 78 TLADALSVRDALLKKRTLYSDLADQLTSRQDRYSRSEIKYVATMDAREIRKKADLAAKEYRQLDVDIQRLNWQ 150 (154)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSTTSCCEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhheeccCHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 444566677777777777777766544321 1111 0 1245667777777777777766666554
No 59
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=24.48 E-value=1.9e+02 Score=20.54 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=26.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQEE 78 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~ 78 (310)
++.+++.....++...++++.+.-..+++.-
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~ 39 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEGDI 39 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888889998999888888888743
No 60
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=24.22 E-value=1.1e+02 Score=18.00 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021594 90 NVKSVEKELLQLEEDVKLL 108 (310)
Q Consensus 90 ~l~~l~~~~~~Le~~~~~l 108 (310)
++-.++.|+|.|.+++..|
T Consensus 8 evgelkgevralkdevkdl 26 (27)
T 3v86_A 8 EVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHhcc
Confidence 4445555566665555443
No 61
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=24.09 E-value=1.5e+02 Score=22.83 Aligned_cols=63 Identities=8% Similarity=0.249 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--hcC--CCChhh---hHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021594 52 QYIKEATELGKKARELKKAADTLHQEE--RSG--SKGRKW---RKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (310)
Q Consensus 52 e~~~~~~~i~~~a~~Lle~~~~lq~~~--~~g--~~~~k~---rr~l~~l~~~~~~Le~~~~~le~~y~~ 114 (310)
++.+...++.+.+..+...-+.+++.- .+| ..+..+ +.....+.++...+-.+++..+..|..
T Consensus 51 ~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre 120 (127)
T 1ez3_A 51 ELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRE 120 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777766521 122 222222 335557888888887788777777653
No 62
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=23.95 E-value=2.7e+02 Score=22.09 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=8.0
Q ss_pred hhhhhhhhhHHHHhh
Q 021594 25 GGVGIACLPLGLIFS 39 (310)
Q Consensus 25 ~gvGlaalPi~lI~~ 39 (310)
.|+++.+..++-+-+
T Consensus 89 ~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 89 IGIGLVFGFIHKLAV 103 (148)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555543
No 63
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.61 E-value=2.1e+02 Score=22.25 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 87 WRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 87 ~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
.++++++|++|...|.++.+.+|+
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677888888888777777665
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.54 E-value=2.3e+02 Score=24.94 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021594 89 KNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~ 110 (310)
|+++++.+|...++++...+|.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANR 111 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555544444
No 65
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=23.51 E-value=1.2e+02 Score=21.06 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 52 QYIKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 52 e~~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
|..+.+....+-.++++|.|+.+..
T Consensus 12 ~l~ev~~iM~~NI~~vl~RGekLd~ 36 (63)
T 1n7s_A 12 QVDEVVDIMRVNVDKVLERDQKLSE 36 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4556666666667777777777766
No 66
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=23.27 E-value=1.2e+02 Score=20.79 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 88 RKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
|++.+.++++.|.-.+....||..
T Consensus 13 Rkk~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 777888888888888888888886
No 67
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.22 E-value=2.3e+02 Score=20.95 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=25.4
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 021594 81 GSKGRKWRKNVKSVEKELLQLEEDVKLLEEMY 112 (310)
Q Consensus 81 g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~y 112 (310)
.++|-|.+|+++.+.++...||.+...|+...
T Consensus 14 ~KLSykeqrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 14 SKLSYKLQRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888887763
No 68
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.15 E-value=1.1e+02 Score=23.45 Aligned_cols=23 Identities=4% Similarity=0.021 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021594 54 IKEATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 54 ~~~~~~i~~~a~~Lle~~~~lq~ 76 (310)
.|.+.+..+-.++++|.|+.|..
T Consensus 40 deVk~IM~~NI~kvLeRGEkLd~ 62 (96)
T 1sfc_A 40 DEVVDIMRVNVDKVLERDQKLSE 62 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Confidence 33444444445555555555554
No 69
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=22.89 E-value=2.2e+02 Score=20.57 Aligned_cols=70 Identities=13% Similarity=0.215 Sum_probs=43.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------cCCCChh-------hhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQEER------SGSKGRK-------WRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~------~g~~~~k-------~rr~l~~l~~~~~~Le~~~~~le~~y~~ 114 (310)
++.+++.....++...++++.+.-..+++.-. +|.-+.. ++...+++.+.+....+..+.....|++
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~ 87 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQ 87 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888888876322 2333333 3444455555555555555555555655
Q ss_pred Ccc
Q 021594 115 GEK 117 (310)
Q Consensus 115 ~~~ 117 (310)
.+.
T Consensus 88 ~D~ 90 (98)
T 3gwk_C 88 TDA 90 (98)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 70
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.87 E-value=2e+02 Score=20.13 Aligned_cols=10 Identities=40% Similarity=0.531 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 021594 67 LKKAADTLHQ 76 (310)
Q Consensus 67 Lle~~~~lq~ 76 (310)
|.|+-.++|+
T Consensus 15 LkDqV~eL~q 24 (56)
T 2w6b_A 15 LKDEVQELRQ 24 (56)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 71
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.72 E-value=1.6e+02 Score=23.96 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 021594 89 KNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~ 110 (310)
-+++.++++...|.++...|++
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544
No 72
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.59 E-value=2.9e+02 Score=26.35 Aligned_cols=23 Identities=26% Similarity=0.253 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021594 89 KNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~~ 111 (310)
.+.+.+++++..|+.+.+.+++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~ 93 (421)
T 1ses_A 71 ARGKALGEEAKRLEEALREKEAR 93 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555565555555544
No 73
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=22.32 E-value=2.9e+02 Score=21.82 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=38.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhhhhHhhHHHhHHHHHHHHHhcccccceeeeehhh------HHHHHHHHHHHHHHH
Q 021594 218 TLMNSFLFNVGLILLCSISVIQFCSTAFGYYAQATAAQEIFGHTLESLRGIKYLYKYNV------FQIAFVVLAGLTFVY 291 (310)
Q Consensus 218 T~~nslLfn~~Llll~s~av~qFc~~~f~~ya~~t~i~~~f~~~~~nl~~~~~~~~~nv------~~y~~l~~~~l~~i~ 291 (310)
+....+++-..++.+...+..+|....+.+|.+. --|..++..--|+|-+..-+. ..++++|+.+.+.+.
T Consensus 14 ~~l~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~a----~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~ 89 (137)
T 4h33_A 14 NGLNRFLMIFVLLVIIIPVPMVFIEPEINNYPDA----LWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMIT 89 (137)
T ss_dssp THHHHHHHHHHHHHHHTHHHHHHHCSSCCSHHHH----HHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH----HHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555566665555555442 223344444455665544332 346677777777665
Q ss_pred HHH
Q 021594 292 YAA 294 (310)
Q Consensus 292 ~l~ 294 (310)
..+
T Consensus 90 ~~i 92 (137)
T 4h33_A 90 STI 92 (137)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 74
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.12 E-value=3.5e+02 Score=22.63 Aligned_cols=23 Identities=17% Similarity=0.032 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021594 89 KNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le~~ 111 (310)
.++..++-+...+|.+.+.++..
T Consensus 103 DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 103 AALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555554
No 75
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.75 E-value=1e+02 Score=27.92 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=20.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 021594 84 GRKWRKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 84 ~~k~rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
..+-+.+++.+++|+..|+++.++|..
T Consensus 70 Ne~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 70 NSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344566788888888888888887765
No 76
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.27 E-value=2.1e+02 Score=21.05 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=32.0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQEERSGSKGRKWRKNVKSVEKELLQLEEDVKLLEEM 111 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~~~Le~~~~~le~~ 111 (310)
++.+++.++-.++..|..-.-+-.+++.+- =.+.++++++++++++.|.++.+.++.+
T Consensus 7 ~~~~~le~Ri~~LE~klAfqE~tIeeLn~~------v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 7 PRDQELEARLVELETRLSFQEQALTELSEA------LADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHTC------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 555566666666555544444444444332 1235678999999999999888877764
No 77
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.91 E-value=60 Score=20.83 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021594 57 ATELGKKARELKKAADTLHQ 76 (310)
Q Consensus 57 ~~~i~~~a~~Lle~~~~lq~ 76 (310)
.+++.++.++|+....+++.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~ 22 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLEN 22 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHH
Confidence 34555566666665555554
No 78
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=20.82 E-value=2.4e+02 Score=20.16 Aligned_cols=70 Identities=10% Similarity=0.182 Sum_probs=45.4
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------CCCC-------hhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 021594 48 ITRSQYIKEATELGKKARELKKAADTLHQEERS------GSKG-------RKWRKNVKSVEKELLQLEEDVKLLEEMYPQ 114 (310)
Q Consensus 48 is~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~------g~~~-------~k~rr~l~~l~~~~~~Le~~~~~le~~y~~ 114 (310)
++.+++.+...++...++++.+..+.++..-.. |.-+ .+++...+++.+.+....+..+.....|++
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~ 88 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILED 88 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888888888888763221 2111 134555566666666666666666666666
Q ss_pred Ccc
Q 021594 115 GEK 117 (310)
Q Consensus 115 ~~~ 117 (310)
.+.
T Consensus 89 ~d~ 91 (99)
T 3zbh_A 89 TDQ 91 (99)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 79
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=20.77 E-value=1.6e+02 Score=20.96 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhhcCCCChhhhHHHHHHHHHH
Q 021594 66 ELKKAADTLHQEERSGSKGRKWRKNVKSVEKEL 98 (310)
Q Consensus 66 ~Lle~~~~lq~~~~~g~~~~k~rr~l~~l~~~~ 98 (310)
+.++...++-++.+..+.+...+.+-++|+++-
T Consensus 5 ~~i~RINeLakK~K~~gLT~eEk~EQ~~LR~eY 37 (60)
T 3bhp_A 5 AKIARINELAAKAKAGVITEEEKAEQQKLRQEY 37 (60)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 346666677776666777776666666665553
No 80
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.62 E-value=1.2e+02 Score=20.71 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 021594 88 RKNVKSVEKELLQLEEDVKLLEE 110 (310)
Q Consensus 88 rr~l~~l~~~~~~Le~~~~~le~ 110 (310)
|++...++++...|.++...+..
T Consensus 25 k~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 25 RLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555554444443
No 81
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=20.59 E-value=4.1e+02 Score=24.92 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-Ch-----------hhhHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 021594 50 RSQYIKEATELGKKARELKKAADTLHQEERSGSK-GR-----------KWRKNVKSVEKELLQLEEDVKLLEEMYPQGEK 117 (310)
Q Consensus 50 ~~e~~~~~~~i~~~a~~Lle~~~~lq~~~~~g~~-~~-----------k~rr~l~~l~~~~~~Le~~~~~le~~y~~~~~ 117 (310)
.+++.+.+..+..+-+++.+..+.+++.+.++.. +. ..+..+..++-.+..|+...+.++..-++.|+
T Consensus 315 ~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 394 (406)
T 4dyl_A 315 TDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEHLGP 394 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC
Confidence 3445555556666666666666666655433322 11 23456666777777777777777777666555
Q ss_pred ch
Q 021594 118 AE 119 (310)
Q Consensus 118 ~~ 119 (310)
.+
T Consensus 395 ~~ 396 (406)
T 4dyl_A 395 GE 396 (406)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 82
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.47 E-value=2.6e+02 Score=26.75 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021594 50 RSQYIKEATELGKKARELKKAADTLHQE 77 (310)
Q Consensus 50 ~~e~~~~~~~i~~~a~~Lle~~~~lq~~ 77 (310)
..++.++-.++.++.+++.+..++.+.+
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~ 32 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAE 32 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666553
No 83
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.37 E-value=1e+02 Score=18.17 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021594 89 KNVKSVEKELLQLEEDVKLLE 109 (310)
Q Consensus 89 r~l~~l~~~~~~Le~~~~~le 109 (310)
.+-.++++|...||.+...||
T Consensus 7 qknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 7 QKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhHHHHHHHHHHHHHHHhc
Confidence 344577778888877765554
No 84
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=20.28 E-value=1.7e+02 Score=21.16 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021594 52 QYIKEATELGKKARELKKAADTLH 75 (310)
Q Consensus 52 e~~~~~~~i~~~a~~Lle~~~~lq 75 (310)
++.....+|.....+|......++
T Consensus 19 ~~~~~~~~i~~~l~~L~~~~~~l~ 42 (98)
T 3gwk_C 19 KYTAGSQQVTEVLNLLTQEQAVID 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544444
Done!