BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021595
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 165/243 (67%), Gaps = 7/243 (2%)
Query: 72 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIK-DVTEPLDQLELIDNL 130
RRSA+Y+P+ WD+DFL S +++ + E YK +A++L+ +V I + E L LELIDN+
Sbjct: 15 RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNV 74
Query: 131 QRLGLAYHFETEIRNILHXXXXXXXXXXWRKENLYATSLEFRLLRQHGYPVSQDVFNGFK 190
QRLGL Y FE++IR L K +L+AT+L FRLLRQHG+ VSQ+ F+GFK
Sbjct: 75 QRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAFSGFK 134
Query: 191 DDKGGFICN---DFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFV 247
D G F+ N D K I+SL+EAS+ +LEGE+I++EA F HLKE +S+ K G +
Sbjct: 135 DQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKE--LSEEKIGKE-L 191
Query: 248 AEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEELKDV 307
AEQ ALELPL + LEA W I+ Y K+ED N +LLELA L++N++Q++YQ +L++
Sbjct: 192 AEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRET 251
Query: 308 SRW 310
SRW
Sbjct: 252 SRW 254
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 109/246 (44%), Positives = 160/246 (65%), Gaps = 7/246 (2%)
Query: 72 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQ 131
RRS NYQP++WD +++QSLN+ YT+E + R EL +V +K+ EP+ QLELI +L+
Sbjct: 6 RRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLK 65
Query: 132 RLGLAYHFETEIRNIL---HXXXXXXXXXXWRKENLYATSLEFRLLRQHGYPVSQDVFNG 188
LGL+ F+ EI+ IL + K +LY T+L FRLLRQHG+ +SQDVFN
Sbjct: 66 YLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNC 125
Query: 189 FKDDKG----GFICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGD 244
FK++KG + D KG++ L+EAS+ +GE +E A +F +K L++ + + D
Sbjct: 126 FKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEID 185
Query: 245 VFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEEL 304
+ + +L+LPL W++ +EARWFID Y +R D N L+ ELAKL FN++QA +Q+EL
Sbjct: 186 ENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQEL 245
Query: 305 KDVSRW 310
KD+SRW
Sbjct: 246 KDLSRW 251
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 155/243 (63%), Gaps = 11/243 (4%)
Query: 73 RSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQR 132
R+ YQP++WD +QS +S Y +E + RA + +V +++ + + +LELID+L+R
Sbjct: 36 RTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRR 95
Query: 133 LGLAYHFETEIRNILHXXXXXXXXXXWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDD 192
LG++ HFE EI IL+ R +LY+T+L FRLLRQ+ + VSQ+VF+ FK+
Sbjct: 96 LGISCHFEREIVEILNSKYYTNNEIDER--DLYSTALRFRLLRQYDFSVSQEVFDCFKNA 153
Query: 193 KGG----FICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHL-KEVMISKSKQGDVFV 247
KG + +D +G++ L+EAS+ S +GE + A F +K L K V++ K D+ +
Sbjct: 154 KGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDK----DINL 209
Query: 248 AEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEELKDV 307
+RALELP W+V M AR FID Y++R D N +LELAKL+FN++QA +Q+ELK+
Sbjct: 210 LSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEA 269
Query: 308 SRW 310
SRW
Sbjct: 270 SRW 272
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 157/246 (63%), Gaps = 9/246 (3%)
Query: 72 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQ 131
RRS NY PS WD +F+QSL S+Y ++ + RA EL V ++ T+ + QLELID+LQ
Sbjct: 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQ 61
Query: 132 RLGLAYHFETEIRNILHXXXXXXXXXX--WRKE--NLYATSLEFRLLRQHGYPVSQDVFN 187
R+GL+ HF+ E + IL + KE +LY+TSL FRLLR+HG+ V+Q+VF+
Sbjct: 62 RMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFD 121
Query: 188 GFKDDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGD 244
FK+++G F + +D +G++ L+EAS+ EGE+ +E A +F +K L+E + GD
Sbjct: 122 SFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGD 181
Query: 245 VFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQEEL 304
+ + +L++PL W++ A +I+ Y KR D N ++LELA L+ N++QA +QEEL
Sbjct: 182 LLT--RIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEEL 239
Query: 305 KDVSRW 310
K+ RW
Sbjct: 240 KESFRW 245
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 167 bits (422), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 155/265 (58%), Gaps = 27/265 (10%)
Query: 56 PVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRA---EELKGKVMT 112
P +S+ D + R A++QPSIW FL + N ET KR EE++ ++
Sbjct: 9 PSSSPLSSNKDEM---RPKADFQPSIWGDLFLNCPDKNIDAETEKRHQQLKEEVRKMIVA 65
Query: 113 TIKDVTEPLDQLELIDNLQRLGLAYHF----ETEIRNILHXXXXXXXXXXWRKENLYATS 168
+ + T+ +L ID++QRLG++YHF E E+ NI H + +LY TS
Sbjct: 66 PMANSTQ---KLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDA-------ENDLYTTS 115
Query: 169 LEFRLLRQHGYPVSQDVFNGFKDDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEAW 225
+ FRLLR+HGY VS DVFN FKD++G F + +D +G++ L++ASY + GE I++EA
Sbjct: 116 IRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAI 175
Query: 226 QFTSKHLKEVMISKSKQGDVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLL 285
FT+ HL + S D ++E+ AL+ + +P +EAR ++ VY+ E N L
Sbjct: 176 SFTTHHLSLAVASL----DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKAL 231
Query: 286 LELAKLEFNVLQAIYQEELKDVSRW 310
LE AK++FN+LQ ++++EL ++ RW
Sbjct: 232 LEFAKIDFNMLQFLHRKELSEICRW 256
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 140/244 (57%), Gaps = 13/244 (5%)
Query: 72 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPL-DQLELIDNL 130
R A++ PS+W FL N E Y + E LK + + L D L LID +
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 131 QRLGLAYHFETEIRNILHXXXXXXXXXXWRKENLYATSLEFRLLRQHGYPVSQDVFNGFK 190
+RLG++YHFE EI +IL +L ++L+FRLLRQHG+ +S ++F+ F+
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 191 DDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFV 247
D+ G F + +D G+++L+EAS+ + I+E+A F++ HL+ S + +
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPL 186
Query: 248 AEQTKRALELPLLWKVPMLEARWFID-VYEKREDKNHLLLELAKLEFNVLQAIYQEELKD 306
EQ ALE L VP +E R+FI +Y+K + KN++LL AKL+FN+LQ ++++EL
Sbjct: 187 REQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQ 246
Query: 307 VSRW 310
VSRW
Sbjct: 247 VSRW 250
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 140/244 (57%), Gaps = 13/244 (5%)
Query: 72 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPL-DQLELIDNL 130
R A++ PS+W FL N E Y + E LK + + L D L LID +
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 131 QRLGLAYHFETEIRNILHXXXXXXXXXXWRKENLYATSLEFRLLRQHGYPVSQDVFNGFK 190
+RLG++YHFE EI +IL +L ++L+FRLLRQHG+ +S ++F+ F+
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 191 DDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFV 247
D+ G F + +D G+++L+EAS+ + I+E+A F++ HL+ S + +
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPL 186
Query: 248 AEQTKRALELPLLWKVPMLEARWFID-VYEKREDKNHLLLELAKLEFNVLQAIYQEELKD 306
EQ ALE L VP +E R+FI +Y+K + KN++LL AKL+FN+LQ ++++EL
Sbjct: 187 REQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQ 246
Query: 307 VSRW 310
VSRW
Sbjct: 247 VSRW 250
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 140/244 (57%), Gaps = 13/244 (5%)
Query: 72 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPL-DQLELIDNL 130
R A++ PS+W FL N E Y + E LK + + L D L LID +
Sbjct: 2 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 61
Query: 131 QRLGLAYHFETEIRNILHXXXXXXXXXXWRKENLYATSLEFRLLRQHGYPVSQDVFNGFK 190
+RLG++YHFE EI +IL +L ++L+FRLLRQHG+ +S ++F+ F+
Sbjct: 62 ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQ 117
Query: 191 DDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFV 247
D+ G F + +D G+++L+EAS+ + I+E+A F++ HL+ S + +
Sbjct: 118 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPL 173
Query: 248 AEQTKRALELPLLWKVPMLEARWFID-VYEKREDKNHLLLELAKLEFNVLQAIYQEELKD 306
EQ ALE L VP +E R+FI +Y+K + KN++LL AKL+FN+LQ ++++EL
Sbjct: 174 REQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQ 233
Query: 307 VSRW 310
VSRW
Sbjct: 234 VSRW 237
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 140/244 (57%), Gaps = 13/244 (5%)
Query: 72 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPL-DQLELIDNL 130
R A++ PS+W FL N E Y + E LK + + L D L LID +
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 76
Query: 131 QRLGLAYHFETEIRNILHXXXXXXXXXXWRKENLYATSLEFRLLRQHGYPVSQDVFNGFK 190
+RLG++YHFE EI +IL +L ++L+FRLLRQHG+ +S ++F+ F+
Sbjct: 77 ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQ 132
Query: 191 DDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFV 247
D+ G F + +D G+++L+EAS+ + I+E+A F++ HL+ S + +
Sbjct: 133 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPL 188
Query: 248 AEQTKRALELPLLWKVPMLEARWFID-VYEKREDKNHLLLELAKLEFNVLQAIYQEELKD 306
EQ ALE L VP +E R+FI +Y+K + KN++LL AKL+FN+LQ ++++EL
Sbjct: 189 REQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQ 248
Query: 307 VSRW 310
VSRW
Sbjct: 249 VSRW 252
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 140/244 (57%), Gaps = 13/244 (5%)
Query: 72 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPL-DQLELIDNL 130
R A++ PS+W FL N E Y + E LK + + L D L LID +
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 76
Query: 131 QRLGLAYHFETEIRNILHXXXXXXXXXXWRKENLYATSLEFRLLRQHGYPVSQDVFNGFK 190
+RLG++YHFE EI +IL +L ++L+FRLLRQHG+ +S ++F+ F+
Sbjct: 77 ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQ 132
Query: 191 DDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFV 247
D+ G F + +D G+++L+EAS+ + I+E+A F++ HL+ S + +
Sbjct: 133 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPL 188
Query: 248 AEQTKRALELPLLWKVPMLEARWFID-VYEKREDKNHLLLELAKLEFNVLQAIYQEELKD 306
EQ ALE L VP +E R+FI +Y+K + KN++LL AKL+FN+LQ ++++EL
Sbjct: 189 REQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQ 248
Query: 307 VSRW 310
VSRW
Sbjct: 249 VSRW 252
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 140/244 (57%), Gaps = 13/244 (5%)
Query: 72 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPL-DQLELIDNL 130
R A++ PS+W FL N E Y + E LK + + L D L LID +
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 131 QRLGLAYHFETEIRNILHXXXXXXXXXXWRKENLYATSLEFRLLRQHGYPVSQDVFNGFK 190
+RLG++YHFE EI +IL +L ++L+FRLLRQHG+ +S ++F+ F+
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 191 DDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFV 247
D+ G F + +D G+++L+EAS+ + I+E+A F++ HL+ S + +
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPL 186
Query: 248 AEQTKRALELPLLWKVPMLEARWFID-VYEKREDKNHLLLELAKLEFNVLQAIYQEELKD 306
EQ ALE L VP +E R+FI +Y+K + KN++LL AKL+FN+LQ ++++EL
Sbjct: 187 REQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQ 246
Query: 307 VSRW 310
VSRW
Sbjct: 247 VSRW 250
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 140/244 (57%), Gaps = 13/244 (5%)
Query: 72 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPL-DQLELIDNL 130
R A++ PS+W FL N E Y + E LK + + L D L LID +
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 131 QRLGLAYHFETEIRNILHXXXXXXXXXXWRKENLYATSLEFRLLRQHGYPVSQDVFNGFK 190
+RLG++YHFE EI +IL +L ++L+FRLLRQHG+ +S ++F+ F+
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 191 DDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFV 247
D+ G F + +D G+++L+EAS+ + I+E+A F++ HL+ S + +
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPL 186
Query: 248 AEQTKRALELPLLWKVPMLEARWFID-VYEKREDKNHLLLELAKLEFNVLQAIYQEELKD 306
EQ ALE L VP +E R+FI +Y+K + KN++LL AKL+FN+LQ ++++EL
Sbjct: 187 REQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQ 246
Query: 307 VSRW 310
VSRW
Sbjct: 247 VSRW 250
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 140/244 (57%), Gaps = 13/244 (5%)
Query: 72 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPL-DQLELIDNL 130
R A++ PS+W FL N E Y + E LK + + + L D L LID +
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDII 74
Query: 131 QRLGLAYHFETEIRNILHXXXXXXXXXXWRKENLYATSLEFRLLRQHGYPVSQDVFNGFK 190
+RLG++YHFE EI IL +L ++L+FRLLRQHG+ +S ++F+ F+
Sbjct: 75 ERLGISYHFEKEIDEILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 191 DDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFV 247
D+ G F + +D G+++L+EAS+ + I+E+A F++ HL+ S + +
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPL 186
Query: 248 AEQTKRALELPLLWKVPMLEARWFID-VYEKREDKNHLLLELAKLEFNVLQAIYQEELKD 306
EQ ALE L VP +E R+FI +Y+K + KN++LL AKL+FN+LQ ++++EL
Sbjct: 187 REQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQ 246
Query: 307 VSRW 310
VSRW
Sbjct: 247 VSRW 250
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 140/244 (57%), Gaps = 13/244 (5%)
Query: 72 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPL-DQLELIDNL 130
R A++ PS+W FL N E Y + E LK + + + L D L LID +
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDII 74
Query: 131 QRLGLAYHFETEIRNILHXXXXXXXXXXWRKENLYATSLEFRLLRQHGYPVSQDVFNGFK 190
+RLG++YHFE EI IL +L ++L+FRLLRQHG+ +S ++F+ F+
Sbjct: 75 ERLGISYHFEKEIDEILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNISPEIFSKFQ 130
Query: 191 DDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFV 247
D+ G F + +D G+++L+EAS+ + I+E+A F++ HL+ S + +
Sbjct: 131 DENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLE----SAAPHLKSPL 186
Query: 248 AEQTKRALELPLLWKVPMLEARWFID-VYEKREDKNHLLLELAKLEFNVLQAIYQEELKD 306
EQ ALE L VP +E R+FI +Y+K + KN++LL AKL+FN+LQ ++++EL
Sbjct: 187 REQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQ 246
Query: 307 VSRW 310
VSRW
Sbjct: 247 VSRW 250
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 37/225 (16%)
Query: 120 PLDQLE---LIDNLQRLGLAYHFETEIRNILHXXXXX--XXXXXWRKEN----LYATSLE 170
P+D LE ++DN+ RLG+ HFE EI+ L W + N L T+L
Sbjct: 295 PVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALG 354
Query: 171 FRLLRQHGYPVSQDVFNGFKDDKGGFICN------DFKGIISLHEASYYSLEGESIMEEA 224
FRLLR H Y VS +F+ FKD G FIC+ D +++L+ AS + GE+I++EA
Sbjct: 355 FRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEA 414
Query: 225 WQFTSKHLKEVMISKSKQGDVF-----VAEQTKRALELPLLWKVPMLEARWFIDVYEKRE 279
F +K+L+E + KS+ + ++++ K AL+ VP +EA+ + VY R
Sbjct: 415 KSFATKYLREAL-EKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVY--RP 471
Query: 280 D--------------KNHLLLELAKLEFNVLQAIYQEELKDVSRW 310
D N LEL KL+FN++Q+I+QEE+K+V+ W
Sbjct: 472 DYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSW 516
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 46 AAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEE 105
A + ++K + C +S+ + RR+AN P++W +D + SL S Y D +Y+ RAE
Sbjct: 2 AGVSAVSKVSSLVCDLSSTSGLI---RRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEV 58
Query: 106 LKGKV 110
L ++
Sbjct: 59 LVSEI 63
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 117/215 (54%), Gaps = 27/215 (12%)
Query: 121 LDQLELIDNLQRLGLAYHFETEIRNILHXXXX--XXXXXXWRKENLY----ATSLEFRLL 174
L++L L+DN++ LG+ HF+ EI+ L W +++L T+L R L
Sbjct: 247 LERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTL 306
Query: 175 RQHGYPVSQDVFNGFKDDKGGFICN------DFKGIISLHEASYYSLEGESIMEEAWQFT 228
R HGY VS DV N FKD+ G F + + + +++L AS + E M++A +F
Sbjct: 307 RMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFA 366
Query: 229 SKHLKEVMISK-SKQGDVFVAEQTKRALELPLLWKVPMLEARWFIDVYE-----KRED-- 280
+L+E + +K S +F ++ + +E P +P LEAR +ID Y+ +R+
Sbjct: 367 EPYLREALATKISTNTKLF--KEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLY 424
Query: 281 -----KNHLLLELAKLEFNVLQAIYQEELKDVSRW 310
N LELAKL+FN++Q+++QEELK ++RW
Sbjct: 425 RMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRW 459
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 39/226 (17%)
Query: 120 PLDQLE---LIDNLQRLGLAYHFETEIRNILHXXXXX--XXXXXWRKEN----LYATSLE 170
PLD E +D ++RLG+ HF+ EI+ L W +EN + T++
Sbjct: 267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMG 326
Query: 171 FRLLRQHGYPVSQDVFNGFKDDKGGFIC------NDFKGIISLHEASYYSLEGESIMEEA 224
R+LR HGY VS DV F+D+ G F C +++++ S+ S GE+IMEEA
Sbjct: 327 LRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEA 386
Query: 225 WQFTSKHLKEVMISKSKQGDVF--------VAEQTKRALELPLLWKVPMLEARWFID--- 273
T ++L+ + + D F + + + AL+ P +P LEAR +I+
Sbjct: 387 KLCTERYLRNAL----ENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYG 442
Query: 274 ---------VYEKREDKNHLLLELAKLEFNVLQAIYQEELKDVSRW 310
VY N LELAKL+FN +Q+I+Q EL+D+ RW
Sbjct: 443 PDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRW 488
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 122/272 (44%), Gaps = 51/272 (18%)
Query: 77 YQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVMTTIKDVTEPLDQLE---LIDNLQRL 133
+ PS F+Q+ +SN E + + G V P+D E ++D LQRL
Sbjct: 205 FSPSSTAFAFMQTRDSNCL-EYLRNAVKRFNGGVPNVF-----PVDLFEHIWIVDRLQRL 258
Query: 134 GLAYHFETEIRNILHXXXX--XXXXXXWRK----ENLYATSLEFRLLRQHGYPVSQDVFN 187
G++ +FE EI+ L W + +++ T++ FRLLRQHGY VS DVF
Sbjct: 259 GISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFK 318
Query: 188 GFKDDKGGFIC------NDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEV------ 235
F + +G F C G+ +L+ AS + E I++ A +F+ +L E
Sbjct: 319 NF-EKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREEL 377
Query: 236 ----MISKSKQGDVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKRED----------- 280
+I K G++ ALE+P +P +E R++ID Y D
Sbjct: 378 IDKWIIMKDLPGEIGF------ALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMP 431
Query: 281 --KNHLLLELAKLEFNVLQAIYQEELKDVSRW 310
N+ LELAK ++N QA +Q E +W
Sbjct: 432 YVNNNGYLELAKQDYNNCQAQHQLEWDIFQKW 463
>pdb|2EL8|A Chain A, Solution Structure Of The Human Stap2 Sh2 Domain
Length = 118
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 238 SKSKQGDVFVAEQTKRALELP-LLWKVPMLEARWFIDVY 275
S G+V E+ +RALE P KV LEA+ ++ Y
Sbjct: 2 SSGSSGEVLAKEEARRALETPSCFLKVSRLEAQLLLERY 40
>pdb|1L1L|A Chain A, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|B Chain B, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|C Chain C, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|D Chain D, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
Length = 739
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 97 ETYKRRAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLA 136
ETY++R++E+ G V + + LEL+D G A
Sbjct: 696 ETYEKRSQEITGNVEEVFSQLNSDVKDLELVDQTDCEGGA 735
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,763,776
Number of Sequences: 62578
Number of extensions: 339590
Number of successful extensions: 1019
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 26
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)