Query 021595
Match_columns 310
No_of_seqs 155 out of 755
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:12:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 7.4E-79 1.6E-83 616.3 20.3 237 72-310 1-246 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 4.4E-60 9.5E-65 495.8 16.2 189 118-310 268-480 (784)
3 PLN02592 ent-copalyl diphospha 100.0 9E-59 1.9E-63 485.6 16.8 209 101-310 286-528 (800)
4 PF01397 Terpene_synth: Terpen 100.0 9.8E-59 2.1E-63 413.9 12.2 173 82-255 1-183 (183)
5 PLN02879 L-ascorbate peroxidas 45.9 4.1 8.8E-05 38.8 -1.5 25 18-43 89-113 (251)
6 COG5123 TOA2 Transcription ini 43.1 12 0.00026 31.3 1.1 42 201-255 1-42 (113)
7 PLN02364 L-ascorbate peroxidas 42.6 3.7 8E-05 38.9 -2.3 18 19-36 89-106 (250)
8 cd00691 ascorbate_peroxidase A 40.0 5.3 0.00011 37.9 -1.7 21 18-38 85-105 (253)
9 PLN02608 L-ascorbate peroxidas 36.1 9.3 0.0002 37.2 -0.7 19 18-36 86-104 (289)
10 cd00693 secretory_peroxidase H 31.0 13 0.00028 36.1 -0.7 22 18-39 90-112 (298)
11 PF11848 DUF3368: Domain of un 30.2 12 0.00026 26.5 -0.8 22 170-191 24-45 (48)
12 PF14164 YqzH: YqzH-like prote 30.2 23 0.0005 27.2 0.7 18 172-189 12-29 (64)
13 PLN03030 cationic peroxidase; 27.9 16 0.00035 36.1 -0.6 19 17-35 109-128 (324)
14 smart00027 EH Eps15 homology d 27.1 2.6E+02 0.0057 21.7 6.4 78 102-184 8-85 (96)
15 COG1725 Predicted transcriptio 25.6 70 0.0015 27.5 2.9 57 163-226 48-118 (125)
16 KOG3463 Transcription initiati 25.5 39 0.00085 28.5 1.3 36 204-252 3-38 (109)
17 KOG3951 Uncharacterized conser 23.8 1.1E+02 0.0023 29.9 4.1 41 191-233 264-307 (321)
18 cd00692 ligninase Ligninase an 23.3 19 0.0004 35.7 -1.1 23 18-41 100-122 (328)
19 PF00141 peroxidase: Peroxidas 20.5 15 0.00032 34.2 -2.4 21 18-38 70-91 (230)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=7.4e-79 Score=616.31 Aligned_cols=237 Identities=50% Similarity=0.815 Sum_probs=218.3
Q ss_pred CCCCCCCCCCCCccccccCCCCCchH-HHHHHHHHHHHHHHHhhhh---cCCccchhhHHHHHHHcCCccchHHHHHHHH
Q 021595 72 RRSANYQPSIWDHDFLQSLNSNYTDE-TYKRRAEELKGKVMTTIKD---VTEPLDQLELIDNLQRLGLAYHFETEIRNIL 147 (310)
Q Consensus 72 Rrsany~PsiW~~~fl~sl~~~~~~~-~~~~~~e~LkeeVr~ml~~---~~d~~~~L~lID~LQRLGI~yhFe~EI~~~L 147 (310)
|++++|+||+||+++++++.+++.+. .+.+++++||++||+|+.. ..|++++|+|||+||||||+|||++||+++|
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L 80 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEIL 80 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Confidence 78999999999997777777766544 7899999999999999976 5699999999999999999999999999999
Q ss_pred HHhhccCCccc-cccCCcccchhhhhhhhhcCcccccccccccccCCCcc---cccchHHHHHHHHhhcCCCCCccHHHH
Q 021595 148 HNNYNNNKDYN-WRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGF---ICNDFKGIISLHEASYYSLEGESIMEE 223 (310)
Q Consensus 148 ~~iy~~~~~~~-~~~~DL~~~AL~FRLLRqhGY~VS~DvF~~Fkd~~G~F---l~~DvkglLsLYeAS~L~~~gE~ILde 223 (310)
++||+.+.... ....|||+|||+|||||||||+||||||++|+|++|+| +.+||+|||||||||||+++||+||||
T Consensus 81 ~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLde 160 (542)
T cd00684 81 DYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDE 160 (542)
T ss_pred HHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHH
Confidence 99998643211 12579999999999999999999999999999999999 789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc-CCCCCcchHHHHHHhccCCccCCchhhHHHHhHHHhhccCcccHHHHHHHHhhhHHHHHHHHH
Q 021595 224 AWQFTSKHLKEVMISK-SKQGDVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDKNHLLLELAKLEFNVLQAIYQE 302 (310)
Q Consensus 224 A~~Fs~~~L~~~l~~~-~l~~~~~L~~~V~~ALe~P~h~~l~RleaR~yI~~Y~~~~~~n~~LLeLAKlDFN~~Qs~hq~ 302 (310)
|+.||++||++.+..+ .+ +++|+++|++||++|||+++||+|||+||+.|++++++|++||||||+|||+||++||+
T Consensus 161 A~~ft~~~L~~~~~~~~~~--~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~ 238 (542)
T cd00684 161 ALSFTTKHLEEKLESNWII--DPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQE 238 (542)
T ss_pred HHHHHHHHHHHHhhccCCC--CchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHH
Confidence 9999999999998321 15 78899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCC
Q 021595 303 ELKDVSRW 310 (310)
Q Consensus 303 EL~~lsRW 310 (310)
||++++||
T Consensus 239 El~~~~rW 246 (542)
T cd00684 239 ELKILSRW 246 (542)
T ss_pred HHHHHhHH
Confidence 99999999
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=4.4e-60 Score=495.85 Aligned_cols=189 Identities=31% Similarity=0.500 Sum_probs=172.8
Q ss_pred CCccchhhHHHHHHHcCCccchHHHHHHHHHHhhccCCc-cccccCCcccchhhhhhhhhcCcccccccccccccCCCcc
Q 021595 118 TEPLDQLELIDNLQRLGLAYHFETEIRNILHNNYNNNKD-YNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGF 196 (310)
Q Consensus 118 ~d~~~~L~lID~LQRLGI~yhFe~EI~~~L~~iy~~~~~-~~~~~~DL~~~AL~FRLLRqhGY~VS~DvF~~Fkd~~G~F 196 (310)
.++++++++||+||||||+|||++||+++|+.+|+.+.. ......|+++|||+|||||||||+||||||++|+|++ |
T Consensus 268 ~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~~--F 345 (784)
T PLN02279 268 LDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAEDH--F 345 (784)
T ss_pred ccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCCc--c
Confidence 588999999999999999999999999999999975321 1123579999999999999999999999999999765 7
Q ss_pred ---c---ccchHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHhhcC-----CCCCcchHHHHHHhccCCccCCchh
Q 021595 197 ---I---CNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKS-----KQGDVFVAEQTKRALELPLLWKVPM 265 (310)
Q Consensus 197 ---l---~~DvkglLsLYeAS~L~~~gE~ILdeA~~Fs~~~L~~~l~~~~-----l~~~~~L~~~V~~ALe~P~h~~l~R 265 (310)
+ .+|++|||+||||||+++|||+|||||+.||++||++.+.++. + +++|+++|+|||++|||+++||
T Consensus 346 ~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~--~~~L~~eV~~AL~~P~~~~l~R 423 (784)
T PLN02279 346 SDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRL--RKYIKKEVEDALNFPYYANLER 423 (784)
T ss_pred cchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhccccccccc--CccHHHHHHHHhcCchhcCccH
Confidence 4 5899999999999999999999999999999999999884321 3 6789999999999999999999
Q ss_pred hHHHHhHHHhhccCc------------ccHHHHHHHHhhhHHHHHHHHHHHhhhcCC
Q 021595 266 LEARWFIDVYEKRED------------KNHLLLELAKLEFNVLQAIYQEELKDVSRW 310 (310)
Q Consensus 266 leaR~yI~~Y~~~~~------------~n~~LLeLAKlDFN~~Qs~hq~EL~~lsRW 310 (310)
+|||+||+.|++++. +|+.||||||+|||+||++||+||++++||
T Consensus 424 lEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rW 480 (784)
T PLN02279 424 LANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERW 480 (784)
T ss_pred HHHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCee
Confidence 999999999988875 899999999999999999999999999999
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=9e-59 Score=485.57 Aligned_cols=209 Identities=32% Similarity=0.451 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHhhhh---c--CCccchhhHHHHHHHcCCccchHHHHHHHHHHhhccCC--cc-c---cccCCcccchh
Q 021595 101 RRAEELKGKVMTTIKD---V--TEPLDQLELIDNLQRLGLAYHFETEIRNILHNNYNNNK--DY-N---WRKENLYATSL 169 (310)
Q Consensus 101 ~~~e~LkeeVr~ml~~---~--~d~~~~L~lID~LQRLGI~yhFe~EI~~~L~~iy~~~~--~~-~---~~~~DL~~~AL 169 (310)
+..+.|..-|++.=.. . .+++++|+|||+||||||+|||++||+++|+.+|+.+. +. . ....|+++|||
T Consensus 286 ~cl~YL~~~~~k~~GgVP~vyP~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TAL 365 (800)
T PLN02592 286 NCLEYLNKAVQRFNGGVPNVYPVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAM 365 (800)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHH
Confidence 3445555555443111 1 58999999999999999999999999999999997422 11 0 12479999999
Q ss_pred hhhhhhhcCcccccccccccccCCCcc------cccchHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHhhcCCCC
Q 021595 170 EFRLLRQHGYPVSQDVFNGFKDDKGGF------ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQG 243 (310)
Q Consensus 170 ~FRLLRqhGY~VS~DvF~~Fkd~~G~F------l~~DvkglLsLYeAS~L~~~gE~ILdeA~~Fs~~~L~~~l~~~~l~~ 243 (310)
+|||||||||+||||||++|++ +|+| ..+|++|||+|||||||+++||+|||||+.||+++|++.+..+.+.+
T Consensus 366 aFRLLRqhGy~VS~DvF~~F~~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d 444 (800)
T PLN02592 366 GFRLLRLHGHQVSADVFKHFEK-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLD 444 (800)
T ss_pred HHHHHHHcCCCCChHHHHhhcC-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999987 8999 27899999999999999999999999999999999999863222210
Q ss_pred ----CcchHHHHHHhccCCccCCchhhHHHHhHHHhhccCcc-------------cHHHHHHHHhhhHHHHHHHHHHHhh
Q 021595 244 ----DVFVAEQTKRALELPLLWKVPMLEARWFIDVYEKREDK-------------NHLLLELAKLEFNVLQAIYQEELKD 306 (310)
Q Consensus 244 ----~~~L~~~V~~ALe~P~h~~l~RleaR~yI~~Y~~~~~~-------------n~~LLeLAKlDFN~~Qs~hq~EL~~ 306 (310)
+++|+++|+|||++|||++|||+||||||+.|++++++ |+.||||||+|||+||++||+||++
T Consensus 445 ~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~ 524 (800)
T PLN02592 445 KWIIMKDLPGEVGFALEIPWYASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDN 524 (800)
T ss_pred ccccCccHHHHHHHhccChhhcCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56899999999999999999999999999999987764 9999999999999999999999999
Q ss_pred hcCC
Q 021595 307 VSRW 310 (310)
Q Consensus 307 lsRW 310 (310)
++||
T Consensus 525 lsrW 528 (800)
T PLN02592 525 FQKW 528 (800)
T ss_pred HhHH
Confidence 9999
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=9.8e-59 Score=413.88 Aligned_cols=173 Identities=53% Similarity=0.843 Sum_probs=147.0
Q ss_pred CCccccccCCCCCc------hHHHHHHHHHHHHHHHHhhhhcC-CccchhhHHHHHHHcCCccchHHHHHHHHHHhhccC
Q 021595 82 WDHDFLQSLNSNYT------DETYKRRAEELKGKVMTTIKDVT-EPLDQLELIDNLQRLGLAYHFETEIRNILHNNYNNN 154 (310)
Q Consensus 82 W~~~fl~sl~~~~~------~~~~~~~~e~LkeeVr~ml~~~~-d~~~~L~lID~LQRLGI~yhFe~EI~~~L~~iy~~~ 154 (310)
|||+||+|+.+.+. .+++.+++++||++||.||.... |++++|+|||+||||||+|||++||+++|+++|+.+
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~ 80 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSW 80 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTT
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhc
Confidence 99999987766554 37889999999999999998754 799999999999999999999999999999999865
Q ss_pred CccccccCCcccchhhhhhhhhcCcccccccccccccCCCcc---cccchHHHHHHHHhhcCCCCCccHHHHHHHHHHHH
Q 021595 155 KDYNWRKENLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKH 231 (310)
Q Consensus 155 ~~~~~~~~DL~~~AL~FRLLRqhGY~VS~DvF~~Fkd~~G~F---l~~DvkglLsLYeAS~L~~~gE~ILdeA~~Fs~~~ 231 (310)
........|||+|||+|||||||||+||||||++|+|++|+| +.+||+|||+|||||||+++||+|||||+.||++|
T Consensus 81 ~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~ 160 (183)
T PF01397_consen 81 DEDNEEIDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTKH 160 (183)
T ss_dssp TTTSHTSSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHHH
T ss_pred cccccccCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 443222359999999999999999999999999999999999 88999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcchHHHHHHhc
Q 021595 232 LKEVMISKSKQGDVFVAEQTKRAL 255 (310)
Q Consensus 232 L~~~l~~~~l~~~~~L~~~V~~AL 255 (310)
|++++...... +++|+++|+|||
T Consensus 161 L~~~~~~~~~~-~~~L~~~V~~AL 183 (183)
T PF01397_consen 161 LKSLLSNLSIP-DPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHTTTCTT-SCHHHHHHHHHH
T ss_pred HHHHhccCCCC-cHHHHHHHHHhC
Confidence 99999433321 346999999997
No 5
>PLN02879 L-ascorbate peroxidase
Probab=45.94 E-value=4.1 Score=38.77 Aligned_cols=25 Identities=24% Similarity=0.200 Sum_probs=18.6
Q ss_pred cccccccCcchhhcccceeeecCCCC
Q 021595 18 YPMSSCINPSTLATSVNGFKCLPLPT 43 (310)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (310)
||.+||+|+++||+++-+ .|.--|+
T Consensus 89 ~~~VScADilalAa~~AV-~~~GGP~ 113 (251)
T PLN02879 89 FPILSYADFYQLAGVVAV-EITGGPE 113 (251)
T ss_pred cCCcCHHHHHHHHHHHHH-HhcCCCc
Confidence 588999999999999753 3444443
No 6
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=43.07 E-value=12 Score=31.32 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=28.0
Q ss_pred hHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHhc
Q 021595 201 FKGIISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQTKRAL 255 (310)
Q Consensus 201 vkglLsLYeAS~L~~~gE~ILdeA~~Fs~~~L~~~l~~~~l~~~~~L~~~V~~AL 255 (310)
+.|+.+|||-|-++--=|++||+ +++.+.+ +++|+..|-...
T Consensus 1 v~~yYElYRrs~ig~~L~dalD~-----------lis~g~i--sp~lam~vLetF 42 (113)
T COG5123 1 VPGYYELYRRSMIGKVLEDALDE-----------LISAGVI--SPNLAMHVLETF 42 (113)
T ss_pred CccHHHHHHHHHHHHHHHHHHHH-----------HHhcCCc--CHHHHHHHHHHh
Confidence 35899999999876545666666 3333566 777776665443
No 7
>PLN02364 L-ascorbate peroxidase 1
Probab=42.57 E-value=3.7 Score=38.95 Aligned_cols=18 Identities=28% Similarity=0.080 Sum_probs=15.7
Q ss_pred ccccccCcchhhccccee
Q 021595 19 PMSSCINPSTLATSVNGF 36 (310)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~ 36 (310)
|.|||+|++.||+++-+.
T Consensus 89 ~~VScADilalAardAV~ 106 (250)
T PLN02364 89 PTISFADFHQLAGVVAVE 106 (250)
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 789999999999986654
No 8
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=39.99 E-value=5.3 Score=37.89 Aligned_cols=21 Identities=29% Similarity=0.119 Sum_probs=17.6
Q ss_pred cccccccCcchhhcccceeee
Q 021595 18 YPMSSCINPSTLATSVNGFKC 38 (310)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~ 38 (310)
||.+||+|++.||+++-+-.|
T Consensus 85 ~~~VScADilalAar~Av~~~ 105 (253)
T cd00691 85 YPDISYADLWQLAGVVAIEEM 105 (253)
T ss_pred cCCCCHHHHHHHHHHHHHHHc
Confidence 478999999999999766555
No 9
>PLN02608 L-ascorbate peroxidase
Probab=36.13 E-value=9.3 Score=37.15 Aligned_cols=19 Identities=21% Similarity=0.013 Sum_probs=16.0
Q ss_pred cccccccCcchhhccccee
Q 021595 18 YPMSSCINPSTLATSVNGF 36 (310)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~ 36 (310)
||.+||+|+++||+++-+-
T Consensus 86 ~~~VScADilalAardAV~ 104 (289)
T PLN02608 86 HPKITYADLYQLAGVVAVE 104 (289)
T ss_pred cCCcCHHHHHHHHHHHHHH
Confidence 4889999999999986543
No 10
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=31.05 E-value=13 Score=36.14 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=18.1
Q ss_pred cc-cccccCcchhhcccceeeec
Q 021595 18 YP-MSSCINPSTLATSVNGFKCL 39 (310)
Q Consensus 18 ~~-~~~~~~~~~~~~~~~~~~~~ 39 (310)
.| .+||+|+++||+++-+-.|-
T Consensus 90 cp~~VScADiialAar~av~~~G 112 (298)
T cd00693 90 CPGVVSCADILALAARDAVVLAG 112 (298)
T ss_pred CCCcccHHHHHHHhhhhceeccC
Confidence 35 89999999999998766553
No 11
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=30.21 E-value=12 Score=26.50 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=16.0
Q ss_pred hhhhhhhcCccccccccccccc
Q 021595 170 EFRLLRQHGYPVSQDVFNGFKD 191 (310)
Q Consensus 170 ~FRLLRqhGY~VS~DvF~~Fkd 191 (310)
.+.-|+++||++|+++++.+..
T Consensus 24 ~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 24 LLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHHcCcccCHHHHHHHHH
Confidence 3445588899999988877653
No 12
>PF14164 YqzH: YqzH-like protein
Probab=30.16 E-value=23 Score=27.24 Aligned_cols=18 Identities=33% Similarity=0.320 Sum_probs=15.1
Q ss_pred hhhhhcCccccccccccc
Q 021595 172 RLLRQHGYPVSQDVFNGF 189 (310)
Q Consensus 172 RLLRqhGY~VS~DvF~~F 189 (310)
+-|||+||++.++.+...
T Consensus 12 ~~l~QYg~d~~~~pls~~ 29 (64)
T PF14164_consen 12 NCLRQYGYDVECMPLSDE 29 (64)
T ss_pred HHHHHhCCcccCCCCCHH
Confidence 569999999999987764
No 13
>PLN03030 cationic peroxidase; Provisional
Probab=27.87 E-value=16 Score=36.13 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=15.8
Q ss_pred ccc-cccccCcchhhcccce
Q 021595 17 VYP-MSSCINPSTLATSVNG 35 (310)
Q Consensus 17 ~~~-~~~~~~~~~~~~~~~~ 35 (310)
..| .|||+|++.||++.-+
T Consensus 109 ~CPg~VSCADilalAarDaV 128 (324)
T PLN03030 109 ACPGVVSCADILALAARDSV 128 (324)
T ss_pred hCCCcccHHHHHHHHhhccc
Confidence 457 8999999999999543
No 14
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=27.06 E-value=2.6e+02 Score=21.68 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhhhcCCccchhhHHHHHHHcCCccchHHHHHHHHHHhhccCCccccccCCcccchhhhhhhhhcCccc
Q 021595 102 RAEELKGKVMTTIKDVTEPLDQLELIDNLQRLGLAYHFETEIRNILHNNYNNNKDYNWRKENLYATSLEFRLLRQHGYPV 181 (310)
Q Consensus 102 ~~e~LkeeVr~ml~~~~d~~~~L~lID~LQRLGI~yhFe~EI~~~L~~iy~~~~~~~~~~~DL~~~AL~FRLLRqhGY~V 181 (310)
+.+.+++..+.+=.+....+..-++...+.++|++ ++|++.++..+=. +.+ ..+.-+=+-.++..--..+.|+.+
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~---~~ev~~i~~~~d~-~~~-g~I~~~eF~~~~~~~~~~~~g~~~ 82 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLP---QTLLAKIWNLADI-DND-GELDKDEFALAMHLIYRKLNGYPI 82 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCC---HHHHHHHHHHhcC-CCC-CCcCHHHHHHHHHHHHHHHcCCCC
Confidence 44455544443322334566777788888889975 4678877765421 111 011112223445555556789999
Q ss_pred ccc
Q 021595 182 SQD 184 (310)
Q Consensus 182 S~D 184 (310)
++.
T Consensus 83 ~~~ 85 (96)
T smart00027 83 PAS 85 (96)
T ss_pred Ccc
Confidence 876
No 15
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=25.65 E-value=70 Score=27.51 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=34.3
Q ss_pred CcccchhhhhhhhhcCcccccccccccccCCCcccccchH------------HHHH--HHHhhcCCCCCccHHHHHHH
Q 021595 163 NLYATSLEFRLLRQHGYPVSQDVFNGFKDDKGGFICNDFK------------GIIS--LHEASYYSLEGESIMEEAWQ 226 (310)
Q Consensus 163 DL~~~AL~FRLLRqhGY~VS~DvF~~Fkd~~G~Fl~~Dvk------------glLs--LYeAS~L~~~gE~ILdeA~~ 226 (310)
+.+|++=+|+.|.+.||=.+--- .|.|.++|.+ ..|+ +.+|..++++-|+|++=...
T Consensus 48 NpnTv~raY~eLE~eG~i~t~rg-------~G~fV~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~G~s~eei~~~~~~ 118 (125)
T COG1725 48 NPNTVQRAYQELEREGIVETKRG-------KGTFVTEDAKEILDQLKRELAEEELEEFIEEAKALGLSLEEILELLKE 118 (125)
T ss_pred CHHHHHHHHHHHHHCCCEEEecC-------eeEEEcCCchhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 57788888888888888665543 3444333322 1222 56777777776666554433
No 16
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=25.55 E-value=39 Score=28.51 Aligned_cols=36 Identities=8% Similarity=0.015 Sum_probs=22.8
Q ss_pred HHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 021595 204 IISLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKSKQGDVFVAEQTK 252 (310)
Q Consensus 204 lLsLYeAS~L~~~gE~ILdeA~~Fs~~~L~~~l~~~~l~~~~~L~~~V~ 252 (310)
+.+|||.+-++-.=+++||| +++.+.+ +|+|+.+|-
T Consensus 3 ~YelYR~ttlG~~L~~tLDe-----------~v~~g~i--tp~la~~VL 38 (109)
T KOG3463|consen 3 YYELYRRTTLGNALQKTLDE-----------LVSDGVI--TPSLAKKVL 38 (109)
T ss_pred HHHHHHHhhHHHHHHHHHHH-----------HHHcCCC--CHHHHHHHH
Confidence 57999999987444455554 4444555 666666553
No 17
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.77 E-value=1.1e+02 Score=29.91 Aligned_cols=41 Identities=29% Similarity=0.449 Sum_probs=30.4
Q ss_pred cCCCcc---cccchHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHH
Q 021595 191 DDKGGF---ICNDFKGIISLHEASYYSLEGESIMEEAWQFTSKHLK 233 (310)
Q Consensus 191 d~~G~F---l~~DvkglLsLYeAS~L~~~gE~ILdeA~~Fs~~~L~ 233 (310)
+.+|-| ..-|+||-..|-.+-- .... +-|=.|..||++||.
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~~-e~LLnaLRfTTKHlN 307 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQS-ECLLNALRFTTKHLN 307 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chhh-HHHHHHHHHHHhhcC
Confidence 467888 5679999998887753 2233 346678999999987
No 18
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=23.29 E-value=19 Score=35.70 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=18.8
Q ss_pred cccccccCcchhhcccceeeecCC
Q 021595 18 YPMSSCINPSTLATSVNGFKCLPL 41 (310)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~ 41 (310)
|+ +||+|++.||++|-+-.|.--
T Consensus 100 ~c-VScADiialAa~~AV~~~~GG 122 (328)
T cd00692 100 HN-VSMADFIQFAGAVAVSNCPGA 122 (328)
T ss_pred cC-cCHHHHHHHHHHHHHHhcCCC
Confidence 45 999999999999887777533
No 19
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=20.47 E-value=15 Score=34.19 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=16.9
Q ss_pred cc-cccccCcchhhcccceeee
Q 021595 18 YP-MSSCINPSTLATSVNGFKC 38 (310)
Q Consensus 18 ~~-~~~~~~~~~~~~~~~~~~~ 38 (310)
.| .+||+|+++||+++-+-.|
T Consensus 70 cp~~VS~ADiialAa~~av~~~ 91 (230)
T PF00141_consen 70 CPGVVSCADIIALAARDAVELC 91 (230)
T ss_dssp STTTS-HHHHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHhhhccccc
Confidence 45 7999999999999777666
Done!