BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021596
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/311 (64%), Positives = 242/311 (77%), Gaps = 4/311 (1%)
Query: 1 MASKSKILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPS-KSQLLDHFKNLGVNF 59
M S+S+IL IG TGYIG+ + +AS+ GHPTF+LVREST S+ S K+QLL+ FK G N
Sbjct: 1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANI 60
Query: 60 VVGDVLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDR 119
V G + +H SLV A+K VDVVISTVG + QV II AIKE G V RFFPSEFGNDVD
Sbjct: 61 VHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDN 120
Query: 120 AHGAVEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVV 179
H AVEPAKSV+ +VKA++RRA+EAEGIPYTYV S CF GYFL +L Q G APPRDKVV
Sbjct: 121 VH-AVEPAKSVF-EVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVV 178
Query: 180 ILGDGNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKT 239
ILGDGN + V+ KE+DI T+TIKAVDDPRTLNK LY++ P N S N+LV+LWE+KI KT
Sbjct: 179 ILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKT 238
Query: 240 LEREYVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKY 299
LE+ YV EE++LK I + P N+ ++I HS+F+ G QTNFEI P+ GVEASQL+PDVKY
Sbjct: 239 LEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPA-GVEASQLYPDVKY 297
Query: 300 TTVDEYLNQFV 310
TTVDEYL+ FV
Sbjct: 298 TTVDEYLSNFV 308
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 350 bits (898), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 175/310 (56%), Positives = 235/310 (75%), Gaps = 5/310 (1%)
Query: 3 SKSKILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSA--PSKSQLLDHFKNLGVNFV 60
+++KIL +G TG IG+ IV AS+KAG+PT+ LVR++ +A +K +L+D++++LGV +
Sbjct: 1 TENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILL 60
Query: 61 VGDVLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDRA 120
GD+ +HE+LV AIKQVD+VI G L+ DQVKII AIKEAGNV +FFPSEFG DVDR
Sbjct: 61 EGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDR- 119
Query: 121 HGAVEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVVI 180
H AVEP + V+ + KA IRR +EAEG+PYTY+ + F GYFL NL Q A PPRDKVVI
Sbjct: 120 HDAVEPVRQVFEE-KASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVI 178
Query: 181 LGDGNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTL 240
LGDGN K Y E D+ T+TI+A +DP TLNK ++I+ P N + N++++LWE+KIGKTL
Sbjct: 179 LGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTL 238
Query: 241 EREYVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKYT 300
E+ YVSEEQ+LK+IQE++ P N +L++YHS + G +EI+P+ +EAS+ +PDV YT
Sbjct: 239 EKTYVSEEQVLKDIQESSFPHNYLLALYHSQQIKG-DAVYEIDPAKDIEASEAYPDVTYT 297
Query: 301 TVDEYLNQFV 310
T DEYLNQFV
Sbjct: 298 TADEYLNQFV 307
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 293 bits (750), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 145/315 (46%), Positives = 211/315 (66%), Gaps = 7/315 (2%)
Query: 1 MASKSKILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLGVNFV 60
M KS++L +GGTGYIGK IV AS+ GHPT+VL R +S K Q+L +FK LG +
Sbjct: 1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 60
Query: 61 VGDVLNHESLVNAIKQVDVVISTVGHALLA----DQVKIIAAIKEAGNVTRFFPSEFGND 116
+ +H+ LV+A+KQVDVVIS + +L+ +Q+K++ AIKEAGN+ RF PSEFG D
Sbjct: 61 EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMD 120
Query: 117 VDRAHGAVEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQ-PGAAAPPR 175
D A++P + D K ++RRA+EA IPYTYV S F GYF +L Q G PPR
Sbjct: 121 PDIMEHALQPGSITFID-KRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPR 179
Query: 176 DKVVILGDGNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERK 235
DKV+I GDGN K ++ EDD+ TYTIK++DDP+TLNK +YI+PP NI S +++ +WER
Sbjct: 180 DKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERL 239
Query: 236 IGKTLEREYVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFP 295
+ L++ Y+S + L ++++ + + ++ + +F G NFEI P+ +EA++L+P
Sbjct: 240 SEQNLDKIYISSQDFLADMKDKSYEEKIVRCHLYQIFFRGDLYNFEIGPN-AIEATKLYP 298
Query: 296 DVKYTTVDEYLNQFV 310
+VKY T+D YL ++V
Sbjct: 299 EVKYVTMDSYLERYV 313
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 259 bits (663), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 135/306 (44%), Positives = 197/306 (64%), Gaps = 4/306 (1%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTL-SAPSKSQLLDHFKNLGVNFVVGDV 64
KI+ GGTGYIGKF+V AS+ HPTF+ R T S PS QL + F+++GV + G++
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 65 LNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDRAHGAV 124
HE +V+ +KQVD+VIS + +++ Q+ II AIK AGN+ RF PS+FG + DR +
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIK-PL 124
Query: 125 EPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVVILGDG 184
P +SV + K IRRA+EA +PYTYV + CF YF+ LL P D +VI G G
Sbjct: 125 PPFESVL-EKKRIIRRAIEAAALPYTYVSANCFGAYFVNYLLHPSPHPNRNDDIVIYGTG 183
Query: 185 NPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREY 244
K V N E+DIA YTIK DPR N+ + +PP NI S N+L+SLWE K G + ++ +
Sbjct: 184 ETKFVLNYEEDIAKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVH 243
Query: 245 VSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKYTTVDE 304
+ +EQL++ QE PQN+ +SI HS+F+ G ++E+ +EAS L+P++++T++D
Sbjct: 244 MPDEQLVRLSQELPQPQNIPVSILHSIFVKGDLMSYEMRKD-DIEASNLYPELEFTSIDG 302
Query: 305 YLNQFV 310
L+ F+
Sbjct: 303 LLDLFI 308
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 194/307 (63%), Gaps = 10/307 (3%)
Query: 4 KSKILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLGVNFVVGD 63
KSKIL GGTGYIG +V+ S+K GHPT+V R ++ SK+ LLD F++LG V G+
Sbjct: 7 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 62
Query: 64 VLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDRAHGA 123
+ HE LV +K+VDVVIS + + DQ KI+ AIK AGN+ RF PS+FG + DR +
Sbjct: 63 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 122
Query: 124 VEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVVILGD 183
P + K IRRA+E IPYTYV + CF YF+ LL+P P+D++ + G
Sbjct: 123 --PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGT 177
Query: 184 GNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLERE 243
G K N E DI YTIK DPR LN+ + +P NI + +L+S WE+KIGK ++
Sbjct: 178 GEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKI 237
Query: 244 YVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKYTTVD 303
+V EE+++ +E P+N+ ++I H +F++G +++ + + VEAS L+P++K+TT+D
Sbjct: 238 HVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTID 296
Query: 304 EYLNQFV 310
E L+ FV
Sbjct: 297 ELLDIFV 303
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 194/307 (63%), Gaps = 10/307 (3%)
Query: 4 KSKILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLGVNFVVGD 63
KSKIL GGTGYIG +V+ S+K GHPT+V R ++ SK+ LLD F++LG V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDRAHGA 123
+ HE LV +K+VDVVIS + + DQ KI+ AIK AGN+ RF PS+FG + DR +
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 126
Query: 124 VEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVVILGD 183
P + K IRRA+E IPYTYV + CF YF+ LL+P P+D++ + G
Sbjct: 127 --PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGT 181
Query: 184 GNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLERE 243
G K N E DI YTIK DPR LN+ + +P NI + +L+S WE+KIGK ++
Sbjct: 182 GEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKI 241
Query: 244 YVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKYTTVD 303
+V EE+++ +E P+N+ ++I H +F++G +++ + + VEAS L+P++K+TT+D
Sbjct: 242 HVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTID 300
Query: 304 EYLNQFV 310
E L+ FV
Sbjct: 301 ELLDIFV 307
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 132/307 (42%), Positives = 194/307 (63%), Gaps = 10/307 (3%)
Query: 4 KSKILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLGVNFVVGD 63
KSKIL GGTGYIG +V+ S+K GHPT+V R ++ SK+ LLD F++LG V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDRAHGA 123
+ HE LV +K+VDVVIS + + DQ KI+ AIK AGN+ RF PS+FG + DR +
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 126
Query: 124 VEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVVILGD 183
P + + IRRA+E IPYTYV + CF YF+ LL+P P+D++ + G
Sbjct: 127 --PPFEALIERQRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGT 181
Query: 184 GNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLERE 243
G K N E DI YTIK DPR LN+ + +P NI + +L+S WE+KIGK ++
Sbjct: 182 GEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKI 241
Query: 244 YVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKYTTVD 303
+V EE+++ +E P+N+ ++I H +F++G +++ + + VEAS L+P++K+TT+D
Sbjct: 242 HVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTID 300
Query: 304 EYLNQFV 310
E L+ FV
Sbjct: 301 ELLDIFV 307
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 237 bits (604), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 193/307 (62%), Gaps = 10/307 (3%)
Query: 4 KSKILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLGVNFVVGD 63
KSKIL GGTGYIG +V+ S+K GHPT+V R ++ SK+ LLD F++LG V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDRAHGA 123
+ HE LV +K+VDVVIS + DQ KI+ AIK AGN+ RF PS+FG + DR +
Sbjct: 67 LDEHEKLVELMKKVDVVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFGVEEDRINAL 126
Query: 124 VEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVVILGD 183
P + K IRRA+E IPYTYV + CF YF+ LL+P P+D++ + G
Sbjct: 127 --PPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRP---YDPKDEITVYGT 181
Query: 184 GNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLERE 243
G K N E DI YTIK DPR LN+ + +P NI + +L+S WE+KIGK ++
Sbjct: 182 GEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKKFKKI 241
Query: 244 YVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKYTTVD 303
+V EE+++ +E P+N+ ++I H +F++G +++ + + VEAS L+P++K+TT+D
Sbjct: 242 HVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKEN-DVEASTLYPELKFTTID 300
Query: 304 EYLNQFV 310
E L+ FV
Sbjct: 301 ELLDIFV 307
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 185/309 (59%), Gaps = 5/309 (1%)
Query: 4 KSKILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLGVNFVVGD 63
K ++L G TG+IG+F+ AS+ A PT++L R S PSK+++ ++ G V G
Sbjct: 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRS-PSKAKIFKALEDKGAIIVYGL 68
Query: 64 VLNHESLVNAIKQ--VDVVISTVGHALLADQVKIIAAIKEAGNVTRFFPSEFGNDVDRAH 121
+ E++ +K+ +D+V+STVG + DQ+ ++ A+K G + RF PSEFG+DV+RA
Sbjct: 69 INEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVNRAD 128
Query: 122 GAVEPAKSVYYDVKARIRRAVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVVIL 181
VEP ++Y + K R+R+ VE GIP+TY+ + N + P PP D I
Sbjct: 129 -PVEPGLNMYRE-KRRVRQLVEESGIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIY 186
Query: 182 GDGNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLE 241
GDGN KA + DI +T+K VDD RTLNK+++ +P N + N+L S+WE+KIG+TL
Sbjct: 187 GDGNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGRTLP 246
Query: 242 REYVSEEQLLKNIQEAAPPQNVILSIYHSVFMNGVQTNFEIEPSFGVEASQLFPDVKYTT 301
R V+E+ LL E PQ+V+ + H +F+ G Q NF I+ VE + L+P+ + T
Sbjct: 247 RVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNFSIDGPEDVEVTTLYPEDSFRT 306
Query: 302 VDEYLNQFV 310
V+E +++
Sbjct: 307 VEECFGEYI 315
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
Length = 344
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 1 MASKSKILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLGVNFV 60
M IL GGTG GK V + + ++V + +S++ F + + F
Sbjct: 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVY--SRDELKQSEMAMEFNDPRMRFF 75
Query: 61 VGDVLNHESLVNAIKQVDVVI 81
+GDV + E L A++ VD+ I
Sbjct: 76 IGDVRDLERLNYALEGVDICI 96
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN
IV Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME
TERNARY Complex
Length = 206
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 1 MASKSKILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLGVNFV 60
MA K KI G TG G + +V+AG+ VLVR+S+ PS+ H V
Sbjct: 1 MAVK-KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS-RLPSEGPRPAH-------VV 51
Query: 61 VGDVLNHESLVNAIKQVDVVISTVG 85
VGDVL + + D VI +G
Sbjct: 52 VGDVLQAADVDKTVAGQDAVIVLLG 76
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLG---VNFVVG 62
++L GG+GYIG ++ GH +L SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVNAI---KQVDVVISTVGHALLADQVK 94
D+ N E+L+ I +D VI G + + V+
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLG---VNFVVG 62
++L GG+GYIG ++ GH +L SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVNAI---KQVDVVISTVGHALLADQVK 94
D+ N E+L+ I +D VI G + + V+
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLG---VNFVVG 62
++L GG+GYIG ++ GH +L SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVNAI---KQVDVVISTVGHALLADQVK 94
D+ N E+L+ I +D VI G + + V+
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLG---VNFVVG 62
++L GG+GYIG ++ GH +L SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVNAI---KQVDVVISTVGHALLADQVK 94
D+ N E+L+ I +D VI G + + V+
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLG---VNFVVG 62
++L GG+GYIG ++ GH +L SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVNAI---KQVDVVISTVGHALLADQVK 94
D+ N E+L+ I +D VI G + + V+
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Galactose
Length = 338
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLG---VNFVVG 62
++L GG+GYIG ++ GH +L SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVNAI---KQVDVVISTVGHALLADQVK 94
D+ N E+L+ I +D VI G + + V+
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli,
Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLG---VNFVVG 62
++L GG+GYIG ++ GH +L SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVNAI---KQVDVVISTVGHALLADQVK 94
D+ N E+L+ I +D VI G + + V+
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLG---VNFVVG 62
++L GG+GYIG ++ GH +L SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVNAI---KQVDVVISTVGHALLADQVK 94
D+ N E+L+ I +D VI G + + V+
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Glucose
Length = 338
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLG---VNFVVG 62
++L GG+GYIG ++ GH +L SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVNAI---KQVDVVISTVGHALLADQVK 94
D+ N E+L+ I +D VI G + + V+
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLG---VNFVVG 62
++L GG+GYIG ++ GH +L SK +L + LG FV G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVNAI---KQVDVVISTVGHALLADQVK 94
D+ N E+L+ I +D VI G + + V+
Sbjct: 58 DIRN-EALMTEILHDHAIDTVIHFAGLKAVGESVQ 91
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose
4,6-Dehydratase) From Streptomyces Venezuelae With Nad
And Tyd Bound
Length = 337
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHPTF----VLVRESTLSAPSKSQLLDHFKNLGVNFVV 61
++L GG G+IG V + +P V+V +S A +++ L + + FV
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 62 GDVLNHESLVNAIKQVDVVI 81
GD+ + L ++ VD ++
Sbjct: 62 GDIRDAGLLARELRGVDAIV 81
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHPTF----VLVRESTLSAPSKSQLLDHFKNLGVNFVV 61
++L GG G+IG V + +P V+V +S A +++ L + + FV
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 62 GDVLNHESLVNAIKQVDVVI 81
GD+ + L ++ VD ++
Sbjct: 62 GDIRDAGLLARELRGVDAIV 81
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 6 KILSIGGTGYIG----KFIVEASVKAGHPTFVLVRESTLSAPSK-SQLLDHFKNLGVNFV 60
K+L GG G+IG ++I+E HP + ++ L S + L D + FV
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEK-----HPDWEVINIDKLGYGSNPANLKDLEDDPRYTFV 59
Query: 61 VGDVLNHESLVNAIKQVDVVI 81
GDV ++E + +++VD V+
Sbjct: 60 KGDVADYELVKELVRKVDGVV 80
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 4 KSKILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNL-----GVN 58
K ++ GGTG++G +I+++ ++ G+ +R + P + + + NL ++
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIR----ADPERKRDVSFLTNLPGASEKLH 56
Query: 59 FVVGDVLNHESLVNAIK 75
F D+ N +S AI+
Sbjct: 57 FFNADLSNPDSFAAAIE 73
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 6 KILSIGGTGYIGKFIVEASVKAGHPTFVLVR 36
KI GGTG++G+++VE+ G+ +L R
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTR 34
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family Protein
From Shigella Flexneri
Length = 236
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 59 FVVGDVLNHESLVNAIKQVDVVISTVGHALLADQVKIIAAIKEAGNVTRF-FPSEFGNDV 117
+ GDVLNH +L A + D+V + + L Q + A +A +V R F G
Sbjct: 71 IIXGDVLNHAALKQAXQGQDIVYANLTGEDLDIQANSVIAAXKACDVKRLIFVLSLGIYD 130
Query: 118 DRAHGAVEPAKSVYYDVKARIRR---AVEAEGIPYTYVE 153
+ VE +V + RR A+EA G+ YT +
Sbjct: 131 EVPGKFVEWNNAVIGEPLKPFRRAADAIEASGLEYTILR 169
>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4U|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4V|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4V|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4W|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
pdb|4B4W|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
Length = 303
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 49/129 (37%), Gaps = 20/129 (15%)
Query: 27 AGHPTFVLVRESTLSAPSKSQLLDHFKNLGVNFVVGDVLNHESLVNAIKQVDVVISTVGH 86
AG V+ R + L P LL N V N LV KQ D+++ VG
Sbjct: 178 AGKHAVVVGRSAILGKPMAMMLLQ--ANATVTICHSRTQNLPELV---KQADIIVGAVGK 232
Query: 87 ALL--ADQVKIIAAIKEAGNVTRFFPSEFGNDVDRAHGAVEPAKSVY---------YDVK 135
A L D +K A + +AG F P + G D +E S Y +
Sbjct: 233 AELIQKDWIKQGAVVVDAG----FHPRDGGGVGDIQLQGIEEIASAYTPVPGGVGPMTIT 288
Query: 136 ARIRRAVEA 144
IR+ VEA
Sbjct: 289 TLIRQTVEA 297
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 8/134 (5%)
Query: 141 AVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVVILGDGNPKAVYNKEDDIATYT 200
A+ IPYT++ + + +F+ L+ A+ V G G +V E +A T
Sbjct: 127 AIRTTNIPYTFLRNALYTDFFVNEGLR--ASTESGAIVTNAGSGIVNSVTRNELALAAAT 184
Query: 201 IKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYVS---EEQLLKNIQEA 257
+ + NL P ++F++L + GK + + VS E+ L N
Sbjct: 185 VLTEEGHENKTYNLVSNQP---WTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVP 241
Query: 258 APPQNVILSIYHSV 271
P + +IY ++
Sbjct: 242 EPFTEITAAIYDAI 255
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 8/134 (5%)
Query: 141 AVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVVILGDGNPKAVYNKEDDIATYT 200
A+ IPYT++ + + +F+ L+ A+ V G G +V E +A T
Sbjct: 127 AIRTTNIPYTFLRNALYTDFFVNEGLR--ASTESGAIVTNAGSGIVNSVTRNELALAAAT 184
Query: 201 IKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYVS---EEQLLKNIQEA 257
+ + NL P ++F++L + GK + + VS E+ L N
Sbjct: 185 VLTEEGHENKTYNLVSNQP---WTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVP 241
Query: 258 APPQNVILSIYHSV 271
P + +IY ++
Sbjct: 242 EPFAEITAAIYDAI 255
>pdb|4E4S|A Chain A, Crystal Structure Of Pika Gitrl
pdb|4E4S|B Chain B, Crystal Structure Of Pika Gitrl
pdb|4E4S|C Chain C, Crystal Structure Of Pika Gitrl
pdb|4E4S|D Chain D, Crystal Structure Of Pika Gitrl
pdb|4E4S|E Chain E, Crystal Structure Of Pika Gitrl
pdb|4E4S|F Chain F, Crystal Structure Of Pika Gitrl
Length = 125
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 179 VILGDGNPKAVYNKEDDIATYTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGK 238
I G P Y K D +TL + IQ GNIY FN G
Sbjct: 44 AIYGRVTPNPTYKGFAPFEVQLCKNKDAIQTLTDSSKIQNLGNIYEFN---------AGD 94
Query: 239 TLEREYVSEEQLLK 252
T+E + S++Q+LK
Sbjct: 95 TIELRFNSDDQVLK 108
>pdb|1OOP|A Chain A, The Crystal Structure Of Swine Vesicular Disease Virus
Length = 283
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 150 TYVESYCFDGYFLPNLLQPGAAAPPRDKVVILGDGNPKAV----YNKEDDIATYTIKAVD 205
T V SY + P++ +APPR V +G GN ++ + + D TY I ++
Sbjct: 154 TKVNSYSWQTSTNPSVFWTEGSAPPRMSVPFIGIGNAYSMFYDGWARFDKQGTYGISTLN 213
Query: 206 DPRTL 210
+ TL
Sbjct: 214 NMGTL 218
>pdb|2I7A|A Chain A, Domain Iv Of Human Calpain 13
Length = 174
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Query: 210 LNKNLYIQPPGNIYSFND---LVSLWERKIGKTLERE 243
LN+ L PPG+++S ++ LV+L E K+ L++E
Sbjct: 30 LNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQE 66
>pdb|2VV5|A Chain A, The Open Structure Of Mscs
pdb|2VV5|B Chain B, The Open Structure Of Mscs
pdb|2VV5|C Chain C, The Open Structure Of Mscs
pdb|2VV5|D Chain D, The Open Structure Of Mscs
pdb|2VV5|E Chain E, The Open Structure Of Mscs
pdb|2VV5|F Chain F, The Open Structure Of Mscs
pdb|2VV5|G Chain G, The Open Structure Of Mscs
Length = 286
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 128 KSVYYDVKARIRRAVEAEGIPYTY 151
++VY+DV RI+R +A GI + Y
Sbjct: 247 QNVYWDVLERIKREFDAAGISFPY 270
>pdb|2OAU|A Chain A, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|B Chain B, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|C Chain C, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|D Chain D, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|E Chain E, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|F Chain F, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|2OAU|G Chain G, Mechanosensitive Channel Of Small Conductance (Mscs)
pdb|4HWA|A Chain A, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|B Chain B, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|C Chain C, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|D Chain D, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|E Chain E, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|F Chain F, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
pdb|4HWA|G Chain G, Crystal Structure Of Escherichia Coli Mscs Wildtype (open
State)
Length = 306
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 128 KSVYYDVKARIRRAVEAEGIPYTY 151
++VY+DV RI+R +A GI + Y
Sbjct: 267 QNVYWDVLERIKREFDAAGISFPY 290
>pdb|4AGF|A Chain A, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|B Chain B, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|C Chain C, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|D Chain D, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|E Chain E, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|F Chain F, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
pdb|4AGF|G Chain G, Mtssl Spin Labeled L124c Mutant Of Mscs In The Open Form
Length = 286
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 128 KSVYYDVKARIRRAVEAEGIPYTY 151
++VY+DV RI+R +A GI + Y
Sbjct: 247 QNVYWDVLERIKREFDAAGISFPY 270
>pdb|4AGE|A Chain A, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|B Chain B, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|C Chain C, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|D Chain D, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|E Chain E, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|F Chain F, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
pdb|4AGE|G Chain G, Mtssl Spin Labeled D67c Mutant Of Mscs In The Open Form
Length = 286
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 128 KSVYYDVKARIRRAVEAEGIPYTY 151
++VY+DV RI+R +A GI + Y
Sbjct: 247 QNVYWDVLERIKREFDAAGISFPY 270
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 10 IGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLGVNFVVGDVLNHES 69
+G TG +G A AGH ++ R S S+ Q L + + V ++L+H
Sbjct: 19 LGATGLLGHHAARAIRAAGHDLVLIHRPS-----SQIQRLAYLEP---ECRVAEMLDHAG 70
Query: 70 LVNAIKQVDVVISTVGH 86
L A++ +D VI + G+
Sbjct: 71 LERALRGLDGVIFSAGY 87
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(h)
Length = 287
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 141 AVEAEGIPYTYVESYCFDGYFLPNLLQPGAAAPPRDKVVILGDGNPKAVYNKEDDIATYT 200
A+ IPYT++ + + +F+ L+ A+ V G G +V E +A T
Sbjct: 127 AIRTTNIPYTFLRNALYTDFFVNEGLR--ASTESGAIVTNAGSGIVNSVTRNELALAAAT 184
Query: 201 IKAVDDPRTLNKNLYIQPPGNIYSFNDLVSLWERKIGKTLEREYVSEEQ 249
+ + NL P ++F++L + GK + + VS E+
Sbjct: 185 VLTEEGHENKTYNLVSNQP---WTFDELAQILSEVSGKKVVHQPVSFEE 230
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 30 PTFVLVRESTLSAPSKSQLLD-HFKNLGVNF----VVGDVLNH---ESLVNAIKQVDVV- 80
P F +V + AP +D H + G+ F V D+++ ++LV A + + +
Sbjct: 239 PIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLKGAVPDIVSKNITKALVEAFEPLGISD 298
Query: 81 ------ISTVGHALLADQVKIIAAIK-EAGNVTRFFPSEFGN 115
I+ G + DQV+ A+K E N TR SE+GN
Sbjct: 299 YNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGN 340
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 7 ILSIGGTGYIGKFIVEASVKAGHPTFVLV-----RESTLSAPSKSQLLDHFKNL 55
IL GG G++G + + HP +V R +TL + ++ L HFKNL
Sbjct: 13 ILITGGAGFVGSNLA-FHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL 65
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 1 MASKSKILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNL----G 56
++ IL GG G+IG V +++ + T+ ++ A + S L++ K++
Sbjct: 21 QSNAXNILVTGGAGFIGSNFVHYXLQS-YETYKII---NFDALTYSGNLNNVKSIQDHPN 76
Query: 57 VNFVVGDVLNHESLVNAIKQVDVVI 81
FV G++ N E L + IK+ DV +
Sbjct: 77 YYFVKGEIQNGELLEHVIKERDVQV 101
>pdb|3MOI|A Chain A, The Crystal Structure Of The Putative Dehydrogenase From
Bordetella Bronchiseptica Rb50
Length = 387
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 18 KFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNLGVNFVVGDVLNHESLVNAIKQV 77
+ +V+AS + H ++ + TLS ++++ + GV+ VVG +H+ +V ++ +
Sbjct: 79 EHVVQASEQGLH--IIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSRSHDPVVRTLRAI 136
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 3 SKSKILSIGGTGYIGKFIVEASVKAGHPTFVLVRESTLSAPSKSQLLDHFKNL 55
S ++L GG GYIG V A ++ + + V+V +S + KS ++ +N+
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIV-DSLVGTHGKSDHVETRENV 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,437,144
Number of Sequences: 62578
Number of extensions: 403516
Number of successful extensions: 1218
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1165
Number of HSP's gapped (non-prelim): 58
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)