Query 021597
Match_columns 310
No_of_seqs 62 out of 64
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 04:13:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07889 DUF1664: Protein of u 100.0 6.5E-59 1.4E-63 393.2 14.1 120 92-211 6-126 (126)
2 PF10805 DUF2730: Protein of u 97.0 0.0019 4E-08 53.4 5.8 90 94-207 9-98 (106)
3 PRK10884 SH3 domain-containing 96.0 0.25 5.4E-06 45.6 14.1 99 104-210 66-168 (206)
4 PF04375 HemX: HemX; InterPro 96.0 0.079 1.7E-06 52.0 11.3 10 101-110 41-50 (372)
5 KOG2629 Peroxisomal membrane a 95.5 0.05 1.1E-06 53.0 7.8 63 93-156 85-157 (300)
6 PRK15048 methyl-accepting chem 94.8 1.8 3.9E-05 43.6 16.6 31 235-265 518-548 (553)
7 PF01519 DUF16: Protein of unk 94.6 0.26 5.7E-06 41.5 8.4 82 119-209 21-102 (102)
8 PF14712 Snapin_Pallidin: Snap 93.8 1.2 2.5E-05 35.1 10.3 72 136-208 15-91 (92)
9 PF00038 Filament: Intermediat 93.7 2.8 6.1E-05 39.2 14.5 91 126-216 167-258 (312)
10 PHA02562 46 endonuclease subun 93.4 0.96 2.1E-05 45.3 11.4 86 132-217 192-277 (562)
11 PRK11637 AmiB activator; Provi 93.3 1.2 2.7E-05 44.0 11.9 81 125-205 44-127 (428)
12 PRK10920 putative uroporphyrin 93.1 1.5 3.2E-05 44.2 12.2 21 90-110 35-57 (390)
13 PF11932 DUF3450: Protein of u 92.9 2.8 6E-05 38.8 12.9 78 135-212 24-101 (251)
14 PF04582 Reo_sigmaC: Reovirus 92.4 0.18 3.8E-06 49.8 4.6 87 124-210 66-155 (326)
15 PF07889 DUF1664: Protein of u 92.1 2.8 6E-05 36.4 11.0 38 140-177 30-67 (126)
16 PF10158 LOH1CR12: Tumour supp 92.1 3.5 7.6E-05 35.8 11.7 50 124-173 27-76 (131)
17 PRK11637 AmiB activator; Provi 91.6 1.7 3.8E-05 43.0 10.5 78 131-208 43-123 (428)
18 PF12718 Tropomyosin_1: Tropom 91.0 4.2 9.2E-05 35.4 11.1 63 150-212 77-139 (143)
19 smart00502 BBC B-Box C-termina 90.7 3.7 8E-05 32.4 9.8 31 212-242 85-116 (127)
20 PF07798 DUF1640: Protein of u 90.6 12 0.00025 33.3 14.0 97 120-219 43-144 (177)
21 PF13747 DUF4164: Domain of un 90.3 3.8 8.3E-05 33.2 9.6 81 141-225 3-83 (89)
22 PF06419 COG6: Conserved oligo 90.3 2.6 5.6E-05 44.3 10.9 88 115-205 6-97 (618)
23 PF00015 MCPsignal: Methyl-acc 90.1 11 0.00024 32.3 13.1 15 61-75 45-59 (213)
24 KOG0250 DNA repair protein RAD 88.7 6.2 0.00013 44.6 12.6 98 134-231 290-387 (1074)
25 PF00015 MCPsignal: Methyl-acc 88.7 15 0.00032 31.6 14.0 23 180-202 134-156 (213)
26 PF11932 DUF3450: Protein of u 88.5 8.3 0.00018 35.7 11.7 77 131-207 34-110 (251)
27 PF10046 BLOC1_2: Biogenesis o 88.0 11 0.00024 30.7 10.9 68 143-210 25-95 (99)
28 PRK06975 bifunctional uroporph 87.7 3.9 8.4E-05 43.4 10.0 37 143-179 375-411 (656)
29 PF05816 TelA: Toxic anion res 87.5 8.6 0.00019 37.4 11.6 99 123-221 86-202 (333)
30 PF06103 DUF948: Bacterial pro 87.4 5.9 0.00013 31.1 8.7 19 189-207 69-87 (90)
31 PF01442 Apolipoprotein: Apoli 87.1 12 0.00026 31.2 10.9 19 126-144 3-21 (202)
32 PRK13729 conjugal transfer pil 86.9 6.8 0.00015 40.7 11.0 51 161-211 70-120 (475)
33 PF05478 Prominin: Prominin; 86.9 7.2 0.00016 42.2 11.7 33 130-162 189-222 (806)
34 PF04156 IncA: IncA protein; 86.8 15 0.00032 32.2 11.7 8 219-226 175-182 (191)
35 PRK04778 septation ring format 86.3 15 0.00033 38.2 13.2 121 103-223 237-411 (569)
36 PHA02562 46 endonuclease subun 86.3 12 0.00027 37.5 12.3 50 157-206 334-383 (562)
37 PF04513 Baculo_PEP_C: Baculov 86.2 14 0.0003 32.8 11.0 83 125-207 35-118 (140)
38 PF09730 BicD: Microtubule-ass 85.8 55 0.0012 35.9 17.4 102 127-236 372-473 (717)
39 PF10018 Med4: Vitamin-D-recep 85.6 12 0.00026 33.6 10.7 87 137-234 11-99 (188)
40 PF10241 KxDL: Uncharacterized 85.5 8.7 0.00019 30.8 8.8 63 144-206 16-82 (88)
41 COG3883 Uncharacterized protei 85.3 6.4 0.00014 38.1 9.3 67 138-204 37-103 (265)
42 TIGR02132 phaR_Bmeg polyhydrox 85.0 4.1 8.8E-05 37.7 7.4 57 151-207 77-133 (189)
43 TIGR00293 prefoldin, archaeal 84.9 2.2 4.8E-05 35.2 5.3 55 99-184 70-124 (126)
44 PRK10884 SH3 domain-containing 84.8 12 0.00026 34.7 10.5 66 126-191 98-163 (206)
45 PF05531 NPV_P10: Nucleopolyhe 84.4 4.3 9.3E-05 32.6 6.5 52 128-180 11-62 (75)
46 COG4942 Membrane-bound metallo 84.0 11 0.00025 38.6 10.9 82 135-221 38-119 (420)
47 PF10498 IFT57: Intra-flagella 84.0 13 0.00029 37.1 11.2 75 123-197 229-317 (359)
48 PRK15048 methyl-accepting chem 83.9 31 0.00068 34.8 13.9 59 139-197 270-328 (553)
49 PF00261 Tropomyosin: Tropomyo 83.7 19 0.0004 33.3 11.4 68 152-219 91-158 (237)
50 PF10146 zf-C4H2: Zinc finger- 83.6 40 0.00087 31.8 15.9 66 161-226 33-98 (230)
51 smart00283 MA Methyl-accepting 83.2 30 0.00066 30.1 14.0 47 161-207 40-86 (262)
52 PRK09039 hypothetical protein; 82.9 17 0.00036 35.8 11.3 87 137-223 100-194 (343)
53 PF10168 Nup88: Nuclear pore c 82.6 21 0.00045 38.8 12.7 76 126-205 541-617 (717)
54 PF05739 SNARE: SNARE domain; 82.5 11 0.00024 27.2 7.6 53 153-205 4-56 (63)
55 PF10226 DUF2216: Uncharacteri 82.5 43 0.00093 31.3 14.2 38 190-227 103-143 (195)
56 PF04100 Vps53_N: Vps53-like, 82.4 5.8 0.00013 39.5 8.0 27 199-225 68-94 (383)
57 PF05597 Phasin: Poly(hydroxya 82.3 11 0.00024 32.8 8.7 25 187-211 108-132 (132)
58 PRK04778 septation ring format 82.1 27 0.00058 36.4 12.9 17 58-74 251-267 (569)
59 PF10805 DUF2730: Protein of u 82.0 10 0.00022 31.4 8.1 65 152-223 34-100 (106)
60 PRK13182 racA polar chromosome 81.9 6.9 0.00015 35.4 7.6 62 146-209 85-146 (175)
61 PF08614 ATG16: Autophagy prot 81.7 6.4 0.00014 35.3 7.3 96 114-209 71-172 (194)
62 PF09177 Syntaxin-6_N: Syntaxi 81.5 6.6 0.00014 31.5 6.7 22 146-167 39-60 (97)
63 smart00806 AIP3 Actin interact 81.5 27 0.00058 36.1 12.4 94 124-217 176-301 (426)
64 PRK04406 hypothetical protein; 81.1 7.8 0.00017 30.6 6.8 47 146-192 4-50 (75)
65 PF10186 Atg14: UV radiation r 81.1 31 0.00066 31.5 11.7 47 145-191 62-108 (302)
66 PF04102 SlyX: SlyX; InterPro 80.6 7.3 0.00016 29.9 6.3 52 151-209 2-53 (69)
67 PF06103 DUF948: Bacterial pro 80.4 20 0.00043 28.1 8.9 29 119-147 17-45 (90)
68 PF05791 Bacillus_HBL: Bacillu 80.2 22 0.00047 31.9 10.2 88 122-209 78-170 (184)
69 PRK11166 chemotaxis regulator 80.0 28 0.00061 32.7 11.1 114 124-237 26-168 (214)
70 KOG1161 Protein involved in va 79.6 5.4 0.00012 39.4 6.6 71 125-196 45-115 (310)
71 cd00890 Prefoldin Prefoldin is 79.6 4.9 0.00011 32.7 5.4 38 148-185 89-126 (129)
72 PRK14011 prefoldin subunit alp 79.3 4.5 9.7E-05 35.6 5.4 40 143-182 85-124 (144)
73 cd00584 Prefoldin_alpha Prefol 79.3 5.1 0.00011 33.2 5.5 42 144-185 85-126 (129)
74 PF04380 BMFP: Membrane fusoge 79.0 8.7 0.00019 30.4 6.4 78 119-209 1-78 (79)
75 TIGR01837 PHA_granule_1 poly(h 78.8 19 0.00041 30.4 8.8 63 147-209 53-117 (118)
76 COG4942 Membrane-bound metallo 78.7 30 0.00065 35.6 11.7 91 122-212 158-255 (420)
77 PF12325 TMF_TATA_bd: TATA ele 78.4 21 0.00046 30.6 9.1 64 121-185 44-107 (120)
78 smart00283 MA Methyl-accepting 78.3 45 0.00098 29.1 14.2 71 126-196 138-208 (262)
79 PF07888 CALCOCO1: Calcium bin 78.3 25 0.00054 37.3 11.3 65 116-180 129-198 (546)
80 PF12718 Tropomyosin_1: Tropom 78.1 46 0.001 29.0 12.7 89 128-220 17-105 (143)
81 PF08317 Spc7: Spc7 kinetochor 77.8 33 0.00072 33.2 11.3 47 117-163 152-201 (325)
82 PF09602 PhaP_Bmeg: Polyhydrox 77.4 33 0.00072 31.3 10.4 88 110-207 14-104 (165)
83 COG3750 Uncharacterized protei 77.3 14 0.00031 30.3 7.2 44 149-199 17-60 (85)
84 PF04582 Reo_sigmaC: Reovirus 77.3 1.4 3E-05 43.7 1.8 57 174-232 98-156 (326)
85 PRK04863 mukB cell division pr 77.3 45 0.00097 39.3 13.9 82 128-209 314-404 (1486)
86 PF10498 IFT57: Intra-flagella 77.1 15 0.00032 36.7 8.9 27 115-141 232-258 (359)
87 PF10073 DUF2312: Uncharacteri 77.0 9.2 0.0002 30.7 6.0 44 149-199 7-50 (74)
88 PF02996 Prefoldin: Prefoldin 77.0 6.2 0.00013 31.9 5.3 41 144-184 75-115 (120)
89 PF06008 Laminin_I: Laminin Do 76.9 35 0.00076 31.8 10.9 81 126-210 22-102 (264)
90 PRK00846 hypothetical protein; 76.9 18 0.00038 29.1 7.6 55 148-209 8-62 (77)
91 COG1196 Smc Chromosome segrega 76.8 57 0.0012 36.9 14.2 28 183-210 872-899 (1163)
92 COG1196 Smc Chromosome segrega 76.7 54 0.0012 37.1 14.0 49 171-219 867-915 (1163)
93 PF07295 DUF1451: Protein of u 76.3 12 0.00026 33.0 7.2 55 138-192 3-58 (146)
94 COG1579 Zn-ribbon protein, pos 76.2 14 0.0003 35.3 8.0 55 154-208 11-65 (239)
95 PRK09793 methyl-accepting prot 76.2 78 0.0017 32.2 13.9 6 259-264 520-525 (533)
96 PRK09793 methyl-accepting prot 76.2 78 0.0017 32.2 13.9 30 150-179 279-308 (533)
97 KOG0972 Huntingtin interacting 76.0 28 0.00061 34.9 10.3 100 111-210 223-327 (384)
98 PF14197 Cep57_CLD_2: Centroso 75.8 30 0.00064 27.0 8.5 66 143-208 2-67 (69)
99 PF12732 YtxH: YtxH-like prote 75.0 12 0.00027 28.6 6.2 26 121-146 26-51 (74)
100 PF08317 Spc7: Spc7 kinetochor 74.5 75 0.0016 30.8 12.8 55 148-202 179-237 (325)
101 PF05531 NPV_P10: Nucleopolyhe 74.4 15 0.00033 29.4 6.7 17 190-206 44-60 (75)
102 PF06120 Phage_HK97_TLTM: Tail 73.9 53 0.0012 32.4 11.6 44 134-177 54-98 (301)
103 PF12128 DUF3584: Protein of u 73.6 43 0.00092 38.1 12.3 94 130-226 258-352 (1201)
104 PRK03947 prefoldin subunit alp 73.3 8.9 0.00019 32.3 5.5 38 145-182 93-130 (140)
105 PF03915 AIP3: Actin interacti 73.2 29 0.00063 35.6 10.0 88 141-228 201-308 (424)
106 PF04740 LXG: LXG domain of WX 73.1 65 0.0014 28.3 11.8 30 183-212 140-169 (204)
107 TIGR00833 actII Transport prot 73.0 41 0.00089 37.0 11.7 50 182-231 601-650 (910)
108 PF02403 Seryl_tRNA_N: Seryl-t 72.8 19 0.0004 29.0 7.0 61 145-209 35-95 (108)
109 PF08700 Vps51: Vps51/Vps67; 72.7 37 0.00079 26.0 8.4 62 144-208 24-85 (87)
110 PRK15041 methyl-accepting chem 72.5 1E+02 0.0022 31.7 13.8 12 126-137 252-263 (554)
111 PF04799 Fzo_mitofusin: fzo-li 72.4 18 0.0004 33.0 7.6 64 139-209 102-165 (171)
112 TIGR00996 Mtu_fam_mce virulenc 71.8 78 0.0017 29.4 11.8 8 61-68 135-142 (291)
113 PF04129 Vps52: Vps52 / Sac2 f 71.4 49 0.0011 34.1 11.3 62 152-213 13-74 (508)
114 PF06160 EzrA: Septation ring 71.1 20 0.00044 37.3 8.6 61 138-198 371-431 (560)
115 TIGR01000 bacteriocin_acc bact 70.9 41 0.00089 33.7 10.4 35 136-170 162-196 (457)
116 PF14257 DUF4349: Domain of un 70.8 10 0.00022 35.1 5.7 34 172-205 160-193 (262)
117 PRK13694 hypothetical protein; 70.8 22 0.00048 29.2 6.9 49 147-199 10-58 (83)
118 KOG0161 Myosin class II heavy 70.7 36 0.00079 41.1 11.2 81 128-208 1361-1441(1930)
119 PF10828 DUF2570: Protein of u 70.6 14 0.0003 30.6 5.9 20 97-116 9-28 (110)
120 PF15397 DUF4618: Domain of un 70.5 72 0.0016 30.9 11.5 47 134-180 62-108 (258)
121 PF04513 Baculo_PEP_C: Baculov 70.4 79 0.0017 28.1 10.9 80 126-208 18-105 (140)
122 PRK02119 hypothetical protein; 70.3 20 0.00044 28.1 6.4 38 150-187 6-43 (73)
123 PRK10698 phage shock protein P 70.0 49 0.0011 30.7 10.0 80 130-214 97-185 (222)
124 KOG4674 Uncharacterized conser 69.7 30 0.00065 41.4 10.2 23 135-157 805-827 (1822)
125 PRK02224 chromosome segregatio 69.5 47 0.001 35.7 11.0 29 136-164 163-198 (880)
126 PF05008 V-SNARE: Vesicle tran 69.1 30 0.00066 26.2 7.1 50 127-179 2-51 (79)
127 PRK02224 chromosome segregatio 69.1 1.3E+02 0.0027 32.5 14.1 6 8-13 25-30 (880)
128 PF06160 EzrA: Septation ring 69.1 64 0.0014 33.7 11.6 121 103-223 233-407 (560)
129 smart00787 Spc7 Spc7 kinetocho 69.1 1.1E+02 0.0023 30.1 12.5 87 122-208 152-245 (312)
130 PF10046 BLOC1_2: Biogenesis o 69.1 61 0.0013 26.4 9.8 26 161-186 36-61 (99)
131 PRK02793 phi X174 lysis protei 69.0 20 0.00042 28.0 6.1 52 150-208 5-56 (72)
132 PF05549 Allexi_40kDa: Allexiv 68.9 46 0.00099 32.5 9.7 26 262-287 165-198 (271)
133 PF06295 DUF1043: Protein of u 68.6 22 0.00048 30.3 6.9 51 118-176 16-66 (128)
134 TIGR03513 GldL_gliding gliding 68.6 84 0.0018 29.5 11.1 89 117-207 103-191 (202)
135 COG3074 Uncharacterized protei 68.6 60 0.0013 26.3 8.7 67 155-221 6-72 (79)
136 TIGR00606 rad50 rad50. This fa 68.2 96 0.0021 35.6 13.6 79 119-197 879-957 (1311)
137 PF15358 TSKS: Testis-specific 68.2 44 0.00095 34.9 9.9 91 136-226 119-212 (558)
138 KOG0250 DNA repair protein RAD 67.9 54 0.0012 37.5 11.3 60 149-208 361-421 (1074)
139 TIGR03495 phage_LysB phage lys 67.8 13 0.00028 32.6 5.4 15 98-112 7-21 (135)
140 TIGR03185 DNA_S_dndD DNA sulfu 67.5 85 0.0018 33.1 12.3 34 174-207 435-468 (650)
141 PRK00295 hypothetical protein; 67.4 26 0.00057 27.0 6.5 39 151-189 3-41 (68)
142 COG1842 PspA Phage shock prote 67.0 76 0.0017 29.8 10.7 90 120-214 91-185 (225)
143 PF03670 UPF0184: Uncharacteri 66.7 26 0.00056 28.7 6.5 48 130-181 28-75 (83)
144 TIGR01843 type_I_hlyD type I s 66.4 1.2E+02 0.0027 28.9 13.2 15 61-75 86-100 (423)
145 PF04912 Dynamitin: Dynamitin 66.3 34 0.00073 33.9 8.6 55 150-207 333-387 (388)
146 PF05701 WEMBL: Weak chloropla 66.3 1.2E+02 0.0025 31.6 12.8 43 169-211 283-325 (522)
147 PRK10698 phage shock protein P 66.3 1.1E+02 0.0024 28.4 11.5 41 172-212 97-137 (222)
148 KOG4117 Heat shock factor bind 66.1 40 0.00087 26.9 7.2 45 122-166 10-54 (73)
149 PF10168 Nup88: Nuclear pore c 66.0 1E+02 0.0022 33.6 12.8 91 123-213 560-664 (717)
150 PRK04325 hypothetical protein; 65.9 28 0.0006 27.3 6.4 52 150-208 6-57 (74)
151 PF01442 Apolipoprotein: Apoli 65.8 77 0.0017 26.3 11.3 40 150-189 86-126 (202)
152 PF06148 COG2: COG (conserved 65.7 7.6 0.00016 32.6 3.5 48 125-172 66-113 (133)
153 KOG1118 Lysophosphatidic acid 65.5 1.6E+02 0.0035 29.9 13.0 45 118-166 126-171 (366)
154 PRK03918 chromosome segregatio 65.2 49 0.0011 35.3 10.1 62 136-197 159-223 (880)
155 cd00193 t_SNARE Soluble NSF (N 65.2 39 0.00085 23.4 6.6 43 153-195 6-48 (60)
156 cd00632 Prefoldin_beta Prefold 65.1 18 0.00039 29.3 5.5 15 61-75 18-32 (105)
157 PRK00736 hypothetical protein; 65.0 28 0.0006 26.9 6.2 50 151-207 3-52 (68)
158 PF04111 APG6: Autophagy prote 64.7 60 0.0013 31.7 9.8 71 138-208 63-133 (314)
159 PF05667 DUF812: Protein of un 64.7 94 0.002 33.2 11.9 91 124-214 397-487 (594)
160 COG3165 Uncharacterized protei 64.4 26 0.00055 33.0 6.9 67 138-210 133-201 (204)
161 PF00261 Tropomyosin: Tropomyo 64.4 1.2E+02 0.0026 28.0 11.9 43 150-192 173-215 (237)
162 PF15188 CCDC-167: Coiled-coil 64.4 22 0.00048 29.1 5.8 58 132-194 2-63 (85)
163 PRK04098 sec-independent trans 63.9 24 0.00051 32.0 6.4 57 124-181 23-79 (158)
164 PF03908 Sec20: Sec20; InterP 63.9 73 0.0016 25.3 8.8 60 138-201 4-63 (92)
165 COG3883 Uncharacterized protei 63.6 43 0.00093 32.6 8.5 55 155-209 33-87 (265)
166 COG2900 SlyX Uncharacterized p 63.6 31 0.00068 27.6 6.3 39 148-186 3-41 (72)
167 PRK09110 flagellar motor prote 63.5 55 0.0012 31.7 9.2 93 94-188 5-106 (283)
168 cd07912 Tweety_N N-terminal do 63.4 40 0.00087 34.5 8.7 83 99-186 93-184 (418)
169 PLN03094 Substrate binding sub 63.2 33 0.00072 34.6 8.0 15 60-74 231-245 (370)
170 COG5283 Phage-related tail pro 63.1 77 0.0017 36.7 11.4 91 126-216 27-120 (1213)
171 cd07596 BAR_SNX The Bin/Amphip 63.1 99 0.0021 26.6 13.7 97 124-223 60-173 (218)
172 TIGR01916 F420_cofE F420-0:gam 62.7 5 0.00011 38.3 2.0 73 62-135 125-202 (243)
173 TIGR03185 DNA_S_dndD DNA sulfu 62.3 80 0.0017 33.3 10.9 43 151-193 426-468 (650)
174 PF03148 Tektin: Tektin family 61.8 1.4E+02 0.003 29.8 12.0 20 189-208 325-344 (384)
175 PF10779 XhlA: Haemolysin XhlA 61.3 30 0.00066 26.5 5.8 15 150-164 3-17 (71)
176 PF09748 Med10: Transcription 61.0 83 0.0018 26.9 9.0 45 127-171 2-51 (128)
177 PF08702 Fib_alpha: Fibrinogen 61.0 1.2E+02 0.0025 26.7 11.9 96 115-210 23-126 (146)
178 smart00787 Spc7 Spc7 kinetocho 60.8 1.6E+02 0.0034 29.0 11.9 36 175-210 205-240 (312)
179 PF13805 Pil1: Eisosome compon 60.7 1.7E+02 0.0037 28.6 12.6 80 127-210 95-180 (271)
180 KOG1853 LIS1-interacting prote 60.6 1.8E+02 0.004 28.8 13.6 72 133-207 50-124 (333)
181 PF07851 TMPIT: TMPIT-like pro 60.1 79 0.0017 31.6 9.8 51 136-186 8-58 (330)
182 cd00179 SynN Syntaxin N-termin 59.7 91 0.002 25.9 8.9 19 128-146 6-24 (151)
183 PF04344 CheZ: Chemotaxis phos 59.6 1.1E+02 0.0023 28.4 10.0 116 124-239 13-158 (214)
184 PF00038 Filament: Intermediat 59.6 1.2E+02 0.0026 28.4 10.6 69 145-213 67-135 (312)
185 PF00804 Syntaxin: Syntaxin; 59.2 77 0.0017 24.1 10.7 64 126-189 5-71 (103)
186 PF09304 Cortex-I_coil: Cortex 58.8 72 0.0016 27.3 8.1 57 123-179 11-70 (107)
187 TIGR00996 Mtu_fam_mce virulenc 58.8 1.5E+02 0.0034 27.5 11.4 10 192-201 231-240 (291)
188 PF12352 V-SNARE_C: Snare regi 58.7 66 0.0014 23.7 7.1 49 154-202 9-57 (66)
189 KOG2180 Late Golgi protein sor 58.5 48 0.001 36.6 8.6 24 146-169 40-63 (793)
190 cd07667 BAR_SNX30 The Bin/Amph 58.4 87 0.0019 29.9 9.5 76 150-225 55-130 (240)
191 KOG3385 V-SNARE [Intracellular 58.4 30 0.00064 30.1 5.8 66 152-222 35-100 (118)
192 PF05377 FlaC_arch: Flagella a 58.2 23 0.00049 27.0 4.5 11 155-165 2-12 (55)
193 PF03114 BAR: BAR domain; Int 58.2 63 0.0014 27.5 7.9 15 61-75 31-45 (229)
194 TIGR02894 DNA_bind_RsfA transc 58.1 1.5E+02 0.0032 27.1 11.7 84 142-225 61-148 (161)
195 KOG0240 Kinesin (SMY1 subfamil 58.1 1.2E+02 0.0026 32.8 11.2 107 117-223 385-498 (607)
196 PLN02678 seryl-tRNA synthetase 57.8 43 0.00094 34.5 7.9 63 144-210 38-100 (448)
197 PF04906 Tweety: Tweety; Inte 57.5 1.3E+02 0.0028 30.4 11.0 87 99-187 73-162 (406)
198 PRK15422 septal ring assembly 57.5 1E+02 0.0022 25.2 8.3 67 155-221 6-72 (79)
199 PF11559 ADIP: Afadin- and alp 57.4 1.2E+02 0.0026 25.8 13.8 88 121-209 28-115 (151)
200 PF06156 DUF972: Protein of un 57.4 50 0.0011 27.8 6.9 30 123-152 3-32 (107)
201 PF00509 Hemagglutinin: Haemag 57.3 11 0.00024 39.9 3.6 75 120-194 363-447 (550)
202 PF02646 RmuC: RmuC family; I 57.2 55 0.0012 31.5 8.1 45 125-169 3-47 (304)
203 PF04375 HemX: HemX; InterPro 56.9 1E+02 0.0022 30.5 10.1 17 97-113 40-56 (372)
204 PF07106 TBPIP: Tat binding pr 56.9 67 0.0014 28.0 7.9 18 191-208 119-136 (169)
205 PF10241 KxDL: Uncharacterized 56.7 1E+02 0.0022 24.8 8.3 54 133-186 23-76 (88)
206 TIGR00634 recN DNA repair prot 56.7 76 0.0016 32.9 9.5 107 115-225 249-369 (563)
207 PF15450 DUF4631: Domain of un 56.6 93 0.002 33.1 10.0 93 114-206 333-448 (531)
208 TIGR02231 conserved hypothetic 56.6 1.3E+02 0.0028 30.8 11.0 84 126-209 69-173 (525)
209 PRK05431 seryl-tRNA synthetase 56.5 60 0.0013 32.9 8.5 65 144-212 33-97 (425)
210 TIGR00414 serS seryl-tRNA synt 56.4 95 0.0021 31.4 9.9 67 143-213 34-101 (418)
211 COG1256 FlgK Flagellar hook-as 56.2 88 0.0019 33.1 9.9 83 121-207 131-213 (552)
212 PF01544 CorA: CorA-like Mg2+ 56.0 1.3E+02 0.0029 27.0 9.9 58 119-176 116-174 (292)
213 cd07621 BAR_SNX5_6 The Bin/Amp 56.0 55 0.0012 30.8 7.6 77 117-196 48-125 (219)
214 PRK10803 tol-pal system protei 55.7 43 0.00092 31.7 7.0 36 171-206 65-100 (263)
215 PRK11032 hypothetical protein; 55.7 61 0.0013 29.2 7.6 51 137-190 12-66 (160)
216 PF02646 RmuC: RmuC family; I 55.6 70 0.0015 30.8 8.5 61 136-197 3-64 (304)
217 KOG2196 Nuclear porin [Nuclear 55.4 93 0.002 30.3 9.1 70 141-210 84-156 (254)
218 PF04799 Fzo_mitofusin: fzo-li 55.3 68 0.0015 29.4 7.9 57 132-188 102-165 (171)
219 KOG4593 Mitotic checkpoint pro 55.3 1.7E+02 0.0037 32.2 12.0 99 124-222 115-213 (716)
220 KOG0994 Extracellular matrix g 55.3 1.7E+02 0.0037 34.6 12.2 41 181-221 1584-1624(1758)
221 TIGR00383 corA magnesium Mg(2+ 55.3 98 0.0021 29.0 9.3 86 124-209 145-244 (318)
222 PF05791 Bacillus_HBL: Bacillu 55.3 1.3E+02 0.0029 26.9 9.7 74 131-204 106-179 (184)
223 PF05384 DegS: Sensor protein 55.2 49 0.0011 29.8 6.8 49 154-202 7-55 (159)
224 KOG0976 Rho/Rac1-interacting s 55.0 1.3E+02 0.0028 34.2 11.1 102 124-225 273-374 (1265)
225 PF06005 DUF904: Protein of un 55.0 66 0.0014 25.3 6.8 64 136-206 8-71 (72)
226 PLN03184 chloroplast Hsp70; Pr 54.9 1.4E+02 0.003 32.0 11.3 66 142-209 562-632 (673)
227 PRK06975 bifunctional uroporph 54.6 33 0.00073 36.6 6.7 24 175-198 386-409 (656)
228 PF03233 Cauli_AT: Aphid trans 54.4 29 0.00064 31.6 5.4 32 161-192 129-160 (163)
229 KOG0860 Synaptobrevin/VAMP-lik 54.3 1.5E+02 0.0032 25.8 9.4 68 152-219 28-95 (116)
230 KOG0996 Structural maintenance 54.3 71 0.0015 37.1 9.3 83 137-219 396-478 (1293)
231 KOG0996 Structural maintenance 54.2 75 0.0016 36.9 9.4 80 143-223 960-1040(1293)
232 PF06248 Zw10: Centromere/kine 54.2 1.9E+02 0.004 30.2 11.8 80 127-208 28-109 (593)
233 PF06009 Laminin_II: Laminin D 53.9 4.3 9.3E-05 34.7 0.0 38 176-213 47-84 (138)
234 PF07439 DUF1515: Protein of u 53.9 75 0.0016 27.5 7.4 54 131-184 4-64 (112)
235 TIGR00634 recN DNA repair prot 53.9 90 0.002 32.4 9.5 45 124-168 269-316 (563)
236 PF02520 DUF148: Domain of unk 53.7 75 0.0016 25.9 7.3 31 126-156 45-75 (113)
237 COG1463 Ttg2C ABC-type transpo 53.7 1.7E+02 0.0036 28.8 10.8 85 133-217 216-300 (359)
238 PRK10920 putative uroporphyrin 53.5 54 0.0012 33.3 7.7 68 86-164 34-103 (390)
239 TIGR02231 conserved hypothetic 53.4 99 0.0022 31.6 9.6 90 128-217 67-167 (525)
240 PF07888 CALCOCO1: Calcium bin 53.4 1.8E+02 0.004 31.1 11.7 37 176-212 285-321 (546)
241 KOG1029 Endocytic adaptor prot 53.0 39 0.00084 37.9 6.9 66 131-196 436-501 (1118)
242 PF05278 PEARLI-4: Arabidopsis 52.7 1.3E+02 0.0027 29.5 9.6 59 170-228 203-261 (269)
243 PHA03395 p10 fibrous body prot 52.7 43 0.00094 27.7 5.6 8 156-163 14-21 (87)
244 PF09738 DUF2051: Double stran 52.6 41 0.00089 33.0 6.5 60 145-204 104-163 (302)
245 PF05266 DUF724: Protein of un 52.3 1.9E+02 0.0041 26.5 10.9 61 147-207 125-185 (190)
246 PF15450 DUF4631: Domain of un 52.3 1.6E+02 0.0034 31.5 10.8 44 124-167 336-379 (531)
247 PF12777 MT: Microtubule-bindi 52.2 65 0.0014 31.4 7.8 60 125-184 218-280 (344)
248 PF06936 Selenoprotein_S: Sele 52.2 44 0.00096 30.8 6.2 63 93-156 35-97 (190)
249 KOG3067 Translin family protei 52.0 95 0.0021 29.5 8.4 101 132-232 6-111 (226)
250 cd07628 BAR_Atg24p The Bin/Amp 52.0 1.1E+02 0.0024 27.4 8.7 74 150-223 8-82 (185)
251 COG4717 Uncharacterized conser 51.9 1.3E+02 0.0028 34.1 10.6 113 120-239 735-862 (984)
252 PF03962 Mnd1: Mnd1 family; I 51.8 1.9E+02 0.0041 26.3 10.9 38 113-153 57-94 (188)
253 KOG2391 Vacuolar sorting prote 51.8 1.9E+02 0.004 29.6 10.9 69 116-185 217-285 (365)
254 PF12761 End3: Actin cytoskele 51.8 1.3E+02 0.0028 28.2 9.2 28 178-205 157-184 (195)
255 PF08580 KAR9: Yeast cortical 51.6 65 0.0014 34.9 8.3 46 113-158 12-59 (683)
256 PHA01750 hypothetical protein 51.6 31 0.00067 27.6 4.4 32 117-148 23-55 (75)
257 smart00502 BBC B-Box C-termina 51.6 1.2E+02 0.0025 23.8 10.7 37 127-163 20-56 (127)
258 PF02994 Transposase_22: L1 tr 51.4 39 0.00084 33.6 6.2 20 191-210 168-187 (370)
259 PF10146 zf-C4H2: Zinc finger- 51.4 2.2E+02 0.0047 27.0 10.9 12 119-130 13-24 (230)
260 PF10602 RPN7: 26S proteasome 51.2 48 0.001 29.4 6.2 58 143-202 4-61 (177)
261 PRK11519 tyrosine kinase; Prov 51.2 2.7E+02 0.0058 30.0 12.7 27 126-152 265-291 (719)
262 COG5143 SNC1 Synaptobrevin/VAM 51.0 63 0.0014 30.1 7.1 56 133-188 127-185 (190)
263 PF04108 APG17: Autophagy prot 50.9 2.8E+02 0.006 28.0 12.8 24 124-147 206-229 (412)
264 TIGR03752 conj_TIGR03752 integ 50.8 1.4E+02 0.0031 31.3 10.3 36 172-207 107-142 (472)
265 PF05802 EspB: Enterobacterial 50.4 1.8E+02 0.004 29.0 10.4 63 147-209 148-210 (317)
266 cd07622 BAR_SNX4 The Bin/Amphi 50.4 2E+02 0.0044 26.3 11.1 69 110-190 58-126 (201)
267 PF10779 XhlA: Haemolysin XhlA 50.4 54 0.0012 25.1 5.6 22 172-193 4-25 (71)
268 PF04791 LMBR1: LMBR1-like mem 50.3 85 0.0018 31.2 8.4 51 93-147 167-222 (471)
269 PF04111 APG6: Autophagy prote 50.3 2.4E+02 0.0052 27.5 11.3 78 142-219 53-130 (314)
270 PF05739 SNARE: SNARE domain; 50.2 93 0.002 22.3 8.7 41 170-210 7-47 (63)
271 COG4026 Uncharacterized protei 49.9 63 0.0014 31.4 7.0 15 28-43 17-31 (290)
272 PF04012 PspA_IM30: PspA/IM30 49.7 2E+02 0.0042 25.9 11.9 41 172-212 96-136 (221)
273 COG1511 Predicted membrane pro 49.5 1.9E+02 0.004 31.7 11.4 102 125-226 148-258 (780)
274 PF06730 FAM92: FAM92 protein; 49.5 2.2E+02 0.0048 27.1 10.5 76 125-204 15-95 (219)
275 PF06156 DUF972: Protein of un 49.3 29 0.00063 29.2 4.2 55 148-202 3-57 (107)
276 KOG0804 Cytoplasmic Zn-finger 49.1 1.7E+02 0.0038 30.8 10.5 33 135-167 364-396 (493)
277 PF12732 YtxH: YtxH-like prote 49.1 53 0.0011 25.1 5.4 36 118-154 17-52 (74)
278 PRK10869 recombination and rep 49.1 1.1E+02 0.0025 31.9 9.4 106 114-223 241-362 (553)
279 TIGR01005 eps_transp_fam exopo 49.0 3.6E+02 0.0079 28.8 13.8 15 61-75 199-213 (754)
280 PF05701 WEMBL: Weak chloropla 48.9 3.3E+02 0.0072 28.3 13.7 73 155-227 367-439 (522)
281 TIGR03818 MotA1 flagellar moto 48.8 96 0.0021 30.0 8.2 93 94-188 5-106 (282)
282 PF03915 AIP3: Actin interacti 48.8 3.3E+02 0.0071 28.2 13.0 67 120-186 205-272 (424)
283 PRK06569 F0F1 ATP synthase sub 48.7 2E+02 0.0044 25.8 9.9 47 143-189 38-84 (155)
284 TIGR02338 gimC_beta prefoldin, 48.7 42 0.0009 27.6 5.0 21 119-140 59-79 (110)
285 KOG1924 RhoA GTPase effector D 48.6 2.3E+02 0.005 32.2 11.7 127 150-277 369-555 (1102)
286 TIGR02492 flgK_ends flagellar 48.6 1.9E+02 0.004 28.0 10.2 44 121-164 127-170 (322)
287 PF01920 Prefoldin_2: Prefoldi 48.5 52 0.0011 25.7 5.4 14 61-74 17-30 (106)
288 PF06320 GCN5L1: GCN5-like pro 48.5 1.7E+02 0.0037 24.9 9.2 57 158-214 38-94 (121)
289 TIGR02135 phoU_full phosphate 48.4 1.7E+02 0.0037 24.9 11.5 52 115-166 3-54 (212)
290 COG0598 CorA Mg2+ and Co2+ tra 48.4 2.6E+02 0.0056 26.9 11.8 92 117-208 143-247 (322)
291 PF10152 DUF2360: Predicted co 48.1 52 0.0011 28.8 5.8 29 180-208 20-48 (148)
292 PF10211 Ax_dynein_light: Axon 48.1 2.1E+02 0.0046 25.9 9.9 23 184-206 166-188 (189)
293 COG2959 HemX Uncharacterized e 48.0 1.4E+02 0.0031 30.7 9.5 79 99-186 43-123 (391)
294 TIGR02977 phageshock_pspA phag 48.0 2E+02 0.0043 26.3 9.8 27 188-214 159-185 (219)
295 PF11945 WASH_WAHD: WAHD domai 47.9 87 0.0019 30.7 7.8 55 128-182 18-72 (297)
296 PF06148 COG2: COG (conserved 47.9 48 0.001 27.8 5.4 32 155-186 64-95 (133)
297 PRK11091 aerobic respiration c 47.7 3.6E+02 0.0078 28.4 16.3 32 134-165 91-122 (779)
298 PF14084 DUF4264: Protein of u 47.5 8.7 0.00019 29.0 0.8 20 279-298 9-28 (52)
299 PRK13729 conjugal transfer pil 47.5 38 0.00082 35.5 5.6 51 160-210 60-112 (475)
300 PF04778 LMP: LMP repeated reg 47.4 1.6E+02 0.0034 26.9 8.7 82 133-214 5-95 (157)
301 PRK10803 tol-pal system protei 47.1 84 0.0018 29.8 7.4 62 152-220 39-100 (263)
302 COG1283 NptA Na+/phosphate sym 46.9 2.7E+02 0.0059 29.7 11.7 97 123-226 337-449 (533)
303 KOG1298 Squalene monooxygenase 46.5 8.1 0.00018 40.1 0.6 18 9-26 48-69 (509)
304 PF02994 Transposase_22: L1 tr 46.3 34 0.00073 34.1 4.9 24 182-205 166-189 (370)
305 cd07667 BAR_SNX30 The Bin/Amph 46.2 2.8E+02 0.006 26.6 13.7 31 124-154 103-133 (240)
306 PF01920 Prefoldin_2: Prefoldi 46.1 1.4E+02 0.0031 23.2 9.4 24 143-166 9-32 (106)
307 PF06013 WXG100: Proteins of 1 46.0 1.1E+02 0.0024 22.0 9.4 15 144-158 23-37 (86)
308 PRK04098 sec-independent trans 45.9 2.3E+02 0.0049 25.8 9.6 49 122-170 39-91 (158)
309 TIGR01010 BexC_CtrB_KpsE polys 45.8 2.3E+02 0.0051 27.3 10.4 85 122-206 164-260 (362)
310 PLN03223 Polycystin cation cha 45.7 1.1E+02 0.0024 36.4 9.2 91 122-217 767-859 (1634)
311 PRK10246 exonuclease subunit S 45.6 2.1E+02 0.0046 32.2 11.4 28 126-153 782-809 (1047)
312 PF06009 Laminin_II: Laminin D 45.6 6.9 0.00015 33.5 0.0 66 152-217 16-81 (138)
313 PRK10361 DNA recombination pro 45.3 3.8E+02 0.0082 28.2 12.3 15 138-152 39-53 (475)
314 cd07624 BAR_SNX7_30 The Bin/Am 45.3 1.6E+02 0.0034 26.6 8.6 69 150-218 18-86 (200)
315 PF02403 Seryl_tRNA_N: Seryl-t 45.2 1.6E+02 0.0035 23.6 10.0 73 151-223 27-102 (108)
316 cd07651 F-BAR_PombeCdc15_like 45.2 2.4E+02 0.0053 25.7 12.9 38 116-153 95-132 (236)
317 TIGR01000 bacteriocin_acc bact 45.1 2.2E+02 0.0048 28.6 10.5 13 14-26 67-79 (457)
318 PF04108 APG17: Autophagy prot 45.0 2.4E+02 0.0051 28.5 10.6 30 124-153 202-231 (412)
319 KOG2629 Peroxisomal membrane a 44.6 96 0.0021 30.8 7.5 30 238-267 201-230 (300)
320 PF13094 CENP-Q: CENP-Q, a CEN 44.6 1.4E+02 0.0029 25.9 7.8 43 169-211 43-85 (160)
321 PF04100 Vps53_N: Vps53-like, 44.6 3.4E+02 0.0074 27.2 11.8 65 120-184 14-95 (383)
322 PRK09039 hypothetical protein; 44.6 3.2E+02 0.007 27.0 13.2 12 27-38 16-27 (343)
323 PLN02867 Probable galacturonos 44.4 1E+02 0.0022 32.9 8.1 35 170-207 123-157 (535)
324 TIGR00414 serS seryl-tRNA synt 44.4 1E+02 0.0023 31.1 8.1 73 153-225 30-106 (418)
325 PF06013 WXG100: Proteins of 1 44.3 1.2E+02 0.0026 21.8 9.1 29 137-165 9-37 (86)
326 PF07957 DUF3294: Protein of u 44.3 50 0.0011 31.3 5.4 66 147-221 5-78 (216)
327 TIGR02976 phageshock_pspB phag 44.3 15 0.00033 29.3 1.7 44 118-164 24-67 (75)
328 PF10392 COG5: Golgi transport 44.2 1.8E+02 0.004 24.6 8.4 71 128-205 26-96 (132)
329 PRK01919 tatB sec-independent 44.2 1.7E+02 0.0036 27.0 8.5 32 124-155 23-54 (169)
330 PRK11085 magnesium/nickel/coba 44.2 3.2E+02 0.007 26.8 12.0 83 124-206 142-239 (316)
331 COG1463 Ttg2C ABC-type transpo 44.0 1.7E+02 0.0036 28.7 9.2 13 215-227 267-279 (359)
332 PF10883 DUF2681: Protein of u 44.0 24 0.00052 29.0 2.9 18 98-115 11-28 (87)
333 PF10234 Cluap1: Clusterin-ass 43.8 1.9E+02 0.0042 28.1 9.4 76 130-206 126-201 (267)
334 KOG0994 Extracellular matrix g 43.6 1.3E+02 0.0027 35.6 9.1 68 137-208 1227-1294(1758)
335 KOG4515 Uncharacterized conser 43.5 2.9E+02 0.0064 26.2 11.2 52 124-175 91-142 (217)
336 COG3352 FlaC Putative archaeal 43.4 1.6E+02 0.0034 26.9 8.1 80 114-194 62-142 (157)
337 PF10267 Tmemb_cc2: Predicted 43.3 3.1E+02 0.0068 28.1 11.2 78 128-208 219-318 (395)
338 PLN02320 seryl-tRNA synthetase 43.2 1.4E+02 0.003 31.5 8.9 92 110-210 63-159 (502)
339 TIGR03007 pepcterm_ChnLen poly 43.2 3.6E+02 0.0078 27.1 11.6 15 61-75 166-180 (498)
340 KOG0161 Myosin class II heavy 43.1 4.8E+02 0.01 32.2 14.0 45 119-163 899-946 (1930)
341 KOG4603 TBP-1 interacting prot 43.1 1.2E+02 0.0026 28.4 7.5 59 151-209 84-144 (201)
342 cd07630 BAR_SNX_like The Bin/A 42.6 1.2E+02 0.0027 27.7 7.6 80 117-196 28-108 (198)
343 PF14182 YgaB: YgaB-like prote 42.5 1.9E+02 0.0041 23.7 7.7 47 152-198 13-64 (79)
344 COG0497 RecN ATPase involved i 42.4 1.3E+02 0.0029 32.2 8.7 99 132-230 266-378 (557)
345 KOG0971 Microtubule-associated 42.4 3.5E+02 0.0075 31.3 12.0 95 124-218 899-1006(1243)
346 KOG0630 Predicted pyridoxal-de 42.2 1.4E+02 0.0031 32.3 8.8 37 243-279 787-827 (838)
347 cd04786 HTH_MerR-like_sg7 Heli 42.2 90 0.002 26.6 6.3 19 190-208 94-112 (131)
348 PF04012 PspA_IM30: PspA/IM30 42.1 1.9E+02 0.0042 25.9 8.7 15 61-75 28-42 (221)
349 PF10224 DUF2205: Predicted co 42.1 88 0.0019 25.3 5.8 42 190-231 25-66 (80)
350 PRK10807 paraquat-inducible pr 42.0 90 0.002 32.8 7.4 22 141-162 438-459 (547)
351 TIGR02680 conserved hypothetic 41.8 4.4E+02 0.0095 30.9 13.3 43 169-211 923-965 (1353)
352 PF10191 COG7: Golgi complex c 41.7 2.4E+02 0.0053 30.8 10.8 65 127-191 37-101 (766)
353 COG2433 Uncharacterized conser 41.7 1.9E+02 0.004 31.6 9.6 72 135-206 418-492 (652)
354 COG0497 RecN ATPase involved i 41.6 1.2E+02 0.0027 32.4 8.3 54 125-179 222-281 (557)
355 PF14817 HAUS5: HAUS augmin-li 41.4 2.2E+02 0.0048 30.9 10.3 81 148-228 81-161 (632)
356 KOG0809 SNARE protein TLG2/Syn 41.4 2.3E+02 0.0049 28.4 9.5 102 123-224 134-272 (305)
357 PF15290 Syntaphilin: Golgi-lo 41.1 2.9E+02 0.0063 27.6 10.2 30 178-207 114-143 (305)
358 PRK15396 murein lipoprotein; P 41.1 89 0.0019 25.2 5.6 35 151-185 30-64 (78)
359 TIGR03007 pepcterm_ChnLen poly 41.0 1.9E+02 0.0042 28.9 9.3 31 123-153 156-186 (498)
360 cd07647 F-BAR_PSTPIP The F-BAR 41.0 2.9E+02 0.0063 25.4 11.0 41 119-159 97-137 (239)
361 COG5185 HEC1 Protein involved 40.9 1.6E+02 0.0034 31.6 8.7 99 109-207 361-513 (622)
362 PF08702 Fib_alpha: Fibrinogen 40.9 2.5E+02 0.0055 24.6 12.4 44 140-183 23-66 (146)
363 PF08172 CASP_C: CASP C termin 40.7 90 0.0019 29.8 6.6 44 139-182 79-122 (248)
364 PF02181 FH2: Formin Homology 40.6 1.9E+02 0.0041 27.8 8.9 65 162-226 276-347 (370)
365 PRK01156 chromosome segregatio 40.6 3.2E+02 0.0069 29.7 11.4 25 136-160 163-187 (895)
366 KOG1103 Predicted coiled-coil 40.5 3.4E+02 0.0075 28.2 10.9 55 158-212 243-297 (561)
367 PF03233 Cauli_AT: Aphid trans 40.5 2.2E+02 0.0047 26.1 8.6 21 191-211 138-158 (163)
368 PF12238 MSA-2c: Merozoite sur 40.4 2.2E+02 0.0048 26.9 8.9 19 157-175 7-25 (205)
369 PRK09841 cryptic autophosphory 40.2 5.1E+02 0.011 28.0 12.8 24 128-151 267-290 (726)
370 PF04124 Dor1: Dor1-like famil 40.1 3.6E+02 0.0078 26.2 11.3 68 143-210 18-89 (338)
371 PRK11115 transcriptional regul 40.0 2.7E+02 0.0059 24.8 9.3 46 121-166 20-65 (236)
372 KOG3758 Uncharacterized conser 39.8 2.7E+02 0.0059 30.5 10.5 79 123-204 51-129 (655)
373 KOG4674 Uncharacterized conser 39.8 4.9E+02 0.011 32.0 13.3 78 125-205 777-854 (1822)
374 cd00024 CHROMO Chromatin organ 39.8 29 0.00062 23.9 2.4 25 105-129 21-45 (55)
375 PF12777 MT: Microtubule-bindi 39.7 2.4E+02 0.0052 27.5 9.5 8 102-109 195-202 (344)
376 PRK04654 sec-independent trans 39.6 2.8E+02 0.0061 26.4 9.5 33 124-156 23-55 (214)
377 PF11802 CENP-K: Centromere-as 39.6 3.6E+02 0.0078 26.5 10.5 113 61-211 57-170 (268)
378 PF06120 Phage_HK97_TLTM: Tail 39.6 3.9E+02 0.0085 26.5 12.6 32 174-205 141-172 (301)
379 PF03962 Mnd1: Mnd1 family; I 39.5 3E+02 0.0064 25.0 9.6 32 118-149 66-97 (188)
380 PF07798 DUF1640: Protein of u 39.5 2.7E+02 0.0059 24.6 10.6 30 131-160 76-105 (177)
381 cd07627 BAR_Vps5p The Bin/Amph 39.4 3E+02 0.0064 25.0 13.5 47 124-173 58-104 (216)
382 PRK11677 hypothetical protein; 39.3 2E+02 0.0044 25.2 8.1 39 138-176 32-70 (134)
383 PF09763 Sec3_C: Exocyst compl 39.3 1.7E+02 0.0036 31.3 9.0 68 138-205 8-75 (701)
384 PRK04863 mukB cell division pr 39.3 5.1E+02 0.011 31.0 13.4 15 61-75 235-249 (1486)
385 PF07106 TBPIP: Tat binding pr 39.1 1E+02 0.0022 26.9 6.2 60 125-188 76-137 (169)
386 KOG1961 Vacuolar sorting prote 39.1 1.4E+02 0.003 32.6 8.2 53 150-202 72-124 (683)
387 PF00957 Synaptobrevin: Synapt 39.0 1.8E+02 0.004 22.5 8.1 21 132-152 7-27 (89)
388 KOG0978 E3 ubiquitin ligase in 39.0 3.5E+02 0.0077 29.9 11.4 84 124-207 534-620 (698)
389 PHA03395 p10 fibrous body prot 38.9 1.2E+02 0.0026 25.1 6.2 22 127-148 10-31 (87)
390 COG4026 Uncharacterized protei 38.8 3.9E+02 0.0084 26.2 10.9 48 176-223 151-198 (290)
391 KOG4559 Uncharacterized conser 38.8 1.1E+02 0.0023 26.5 6.1 49 125-173 58-106 (120)
392 PF05508 Ran-binding: RanGTP-b 38.8 2.1E+02 0.0045 28.5 8.9 76 120-195 15-105 (302)
393 PRK13169 DNA replication intia 38.7 1.3E+02 0.0029 25.5 6.7 32 122-153 2-33 (110)
394 PF09403 FadA: Adhesion protei 38.6 2.7E+02 0.0058 24.3 12.1 84 124-207 23-112 (126)
395 COG3910 Predicted ATPase [Gene 38.5 40 0.00087 32.2 3.8 44 64-114 25-70 (233)
396 PF08614 ATG16: Autophagy prot 38.5 2E+02 0.0044 25.7 8.2 53 142-194 119-171 (194)
397 TIGR02132 phaR_Bmeg polyhydrox 38.3 1.6E+02 0.0035 27.5 7.5 46 125-170 83-138 (189)
398 PF06705 SF-assemblin: SF-asse 38.3 3.3E+02 0.0071 25.2 13.0 35 124-158 88-122 (247)
399 KOG3595 Dyneins, heavy chain [ 38.3 3.2E+02 0.0069 32.1 11.5 20 114-133 893-912 (1395)
400 PF05478 Prominin: Prominin; 38.2 3.1E+02 0.0068 30.0 11.0 34 118-151 159-196 (806)
401 TIGR01554 major_cap_HK97 phage 38.1 1.3E+02 0.0027 29.4 7.3 11 277-287 114-124 (378)
402 PF12352 V-SNARE_C: Snare regi 37.9 1.6E+02 0.0035 21.6 7.8 18 184-201 46-63 (66)
403 KOG2211 Predicted Golgi transp 37.8 3.8E+02 0.0083 29.9 11.3 80 112-196 55-143 (797)
404 PF15112 DUF4559: Domain of un 37.7 82 0.0018 31.4 6.0 76 120-195 203-285 (307)
405 COG4477 EzrA Negative regulato 37.6 3.7E+02 0.008 29.1 10.9 106 125-230 278-389 (570)
406 TIGR00606 rad50 rad50. This fa 37.6 3.4E+02 0.0074 31.3 11.5 43 151-193 222-264 (1311)
407 PLN03094 Substrate binding sub 37.6 98 0.0021 31.3 6.6 14 34-47 232-245 (370)
408 PF00957 Synaptobrevin: Synapt 37.4 2E+02 0.0042 22.4 9.8 24 136-159 4-27 (89)
409 PF02388 FemAB: FemAB family; 37.3 74 0.0016 31.7 5.7 33 119-151 233-265 (406)
410 COG1730 GIM5 Predicted prefold 37.2 52 0.0011 29.2 4.2 43 120-162 86-131 (145)
411 PF06825 HSBP1: Heat shock fac 37.2 1E+02 0.0022 23.3 5.1 32 135-166 10-41 (54)
412 PHA00276 phage lambda Rz-like 37.1 1.5E+02 0.0033 26.6 7.0 31 161-191 50-80 (144)
413 KOG4832 Uncharacterized conser 37.0 96 0.0021 30.1 6.1 69 150-224 5-74 (253)
414 PF10267 Tmemb_cc2: Predicted 37.0 4.8E+02 0.01 26.8 13.1 96 133-229 214-318 (395)
415 PF11285 DUF3086: Protein of u 36.9 4.1E+02 0.009 26.3 10.4 111 147-288 5-117 (283)
416 PF10481 CENP-F_N: Cenp-F N-te 36.8 4.5E+02 0.0097 26.3 11.1 52 145-196 28-82 (307)
417 PLN02678 seryl-tRNA synthetase 36.7 3.5E+02 0.0076 28.0 10.5 87 135-223 13-106 (448)
418 PF14257 DUF4349: Domain of un 36.2 1.2E+02 0.0026 28.1 6.6 27 172-198 167-193 (262)
419 PRK12482 flagellar motor prote 36.0 2.2E+02 0.0048 27.9 8.5 93 94-188 5-106 (287)
420 PF13874 Nup54: Nucleoporin co 36.0 1.4E+02 0.003 25.7 6.5 69 124-192 54-125 (141)
421 PF02520 DUF148: Domain of unk 36.0 1.2E+02 0.0027 24.6 6.0 17 121-137 29-45 (113)
422 PF12128 DUF3584: Protein of u 36.0 4E+02 0.0086 30.6 11.7 84 127-210 287-381 (1201)
423 COG1392 Phosphate transport re 35.9 3.7E+02 0.008 25.1 10.7 41 190-230 149-198 (217)
424 cd00179 SynN Syntaxin N-termin 35.7 1.1E+02 0.0023 25.5 5.7 15 194-208 54-68 (151)
425 PLN02320 seryl-tRNA synthetase 35.6 1.4E+02 0.003 31.5 7.5 34 190-223 132-165 (502)
426 TIGR01834 PHA_synth_III_E poly 35.6 3.1E+02 0.0067 27.5 9.6 25 115-139 195-219 (320)
427 PF03961 DUF342: Protein of un 35.5 1.9E+02 0.0042 29.1 8.4 26 125-150 331-356 (451)
428 COG1340 Uncharacterized archae 35.4 4.6E+02 0.01 26.1 12.7 71 136-206 52-125 (294)
429 KOG4514 Uncharacterized conser 35.4 3.8E+02 0.0082 25.5 9.5 29 174-202 192-220 (222)
430 KOG4677 Golgi integral membran 35.4 3.9E+02 0.0085 28.5 10.5 73 139-211 249-346 (554)
431 KOG3990 Uncharacterized conser 35.4 1.3E+02 0.0028 29.7 6.7 56 139-206 229-285 (305)
432 PRK11020 hypothetical protein; 35.4 1.7E+02 0.0037 25.5 6.8 54 152-214 4-57 (118)
433 smart00397 t_SNARE Helical reg 35.2 1.6E+02 0.0034 20.6 7.2 26 153-178 12-37 (66)
434 PF01996 F420_ligase: F420-0:G 35.2 6.5 0.00014 36.6 -1.9 73 62-135 133-210 (228)
435 PF05266 DUF724: Protein of un 35.1 3.6E+02 0.0078 24.7 10.1 22 150-171 90-111 (190)
436 PF05276 SH3BP5: SH3 domain-bi 35.0 4.1E+02 0.0089 25.4 10.5 82 127-208 20-111 (239)
437 PF02302 PTS_IIB: PTS system, 34.7 12 0.00026 28.4 -0.2 18 7-24 1-18 (90)
438 PF12329 TMF_DNA_bd: TATA elem 34.7 2.2E+02 0.0048 22.2 8.7 56 160-215 5-60 (74)
439 COG2096 cob(I)alamin adenosylt 34.6 1E+02 0.0023 28.5 5.8 64 137-209 38-102 (184)
440 smart00298 CHROMO Chromatin or 34.6 47 0.001 22.7 2.8 23 106-128 20-42 (55)
441 KOG3091 Nuclear pore complex, 34.5 1.8E+02 0.004 30.9 8.1 63 149-211 337-399 (508)
442 PF10186 Atg14: UV radiation r 34.2 3.6E+02 0.0078 24.5 14.3 11 287-297 258-268 (302)
443 PRK10499 PTS system N,N'-diace 34.2 23 0.00049 29.2 1.4 68 7-85 5-82 (106)
444 KOG3385 V-SNARE [Intracellular 34.1 1.5E+02 0.0032 25.9 6.3 59 163-221 32-90 (118)
445 PRK13293 F420-0--gamma-glutamy 34.1 32 0.0007 33.0 2.5 73 63-135 127-203 (245)
446 PF10174 Cast: RIM-binding pro 34.1 4.3E+02 0.0092 29.5 11.2 82 126-207 313-397 (775)
447 PRK09343 prefoldin subunit bet 33.9 1.1E+02 0.0023 25.9 5.4 47 140-186 65-111 (121)
448 PTZ00446 vacuolar sorting prot 33.8 2.7E+02 0.0059 25.8 8.4 32 135-168 111-142 (191)
449 PF04977 DivIC: Septum formati 33.8 1.3E+02 0.0027 22.3 5.3 30 150-179 21-50 (80)
450 PRK09303 adaptive-response sen 33.7 1E+02 0.0022 29.6 5.9 19 168-186 158-176 (380)
451 KOG0963 Transcription factor/C 33.7 4.1E+02 0.0089 29.1 10.7 76 135-210 178-264 (629)
452 cd07625 BAR_Vps17p The Bin/Amp 33.6 2.5E+02 0.0053 26.6 8.2 72 122-199 47-123 (230)
453 PF06825 HSBP1: Heat shock fac 33.5 1.3E+02 0.0027 22.8 5.1 36 131-166 13-48 (54)
454 PF04523 Herpes_U30: Herpes vi 33.4 2.6E+02 0.0057 31.4 9.6 35 117-151 693-727 (887)
455 PF02346 Vac_Fusion: Chordopox 33.4 1.5E+02 0.0032 22.8 5.4 51 155-205 3-53 (57)
456 COG0598 CorA Mg2+ and Co2+ tra 33.3 1.1E+02 0.0024 29.4 6.0 72 135-206 180-252 (322)
457 PF14661 HAUS6_N: HAUS augmin- 33.3 4.1E+02 0.0088 24.8 9.9 55 136-190 154-208 (247)
458 COG5665 NOT5 CCR4-NOT transcri 33.3 1.1E+02 0.0023 32.0 6.1 43 126-174 117-159 (548)
459 PRK13169 DNA replication intia 33.3 96 0.0021 26.4 5.0 53 148-200 3-55 (110)
460 PRK09458 pspB phage shock prot 32.9 31 0.00067 27.8 1.8 44 118-164 24-67 (75)
461 TIGR00153 conserved hypothetic 32.9 3.4E+02 0.0074 24.4 8.8 15 194-208 153-167 (216)
462 PF07544 Med9: RNA polymerase 32.8 1E+02 0.0022 24.5 4.8 57 131-188 24-80 (83)
463 PF04695 Pex14_N: Peroxisomal 32.8 43 0.00094 28.7 2.9 27 200-227 23-49 (136)
464 PRK15396 murein lipoprotein; P 32.8 1.7E+02 0.0036 23.6 6.0 7 213-219 64-70 (78)
465 PRK05683 flgK flagellar hook-a 32.4 3.8E+02 0.0082 29.2 10.4 58 121-178 127-184 (676)
466 cd07655 F-BAR_PACSIN The F-BAR 32.4 4.3E+02 0.0092 24.8 10.1 33 122-154 113-145 (258)
467 cd07662 BAR_SNX6 The Bin/Amphi 32.3 1.9E+02 0.0042 27.4 7.3 26 118-143 48-73 (218)
468 PTZ00446 vacuolar sorting prot 32.2 3.3E+02 0.0072 25.2 8.6 68 143-211 31-104 (191)
469 PF07851 TMPIT: TMPIT-like pro 32.2 2.3E+02 0.0051 28.4 8.2 28 124-151 21-48 (330)
470 PHA03332 membrane glycoprotein 32.2 4.7E+02 0.01 30.8 11.1 37 167-203 923-963 (1328)
471 PRK07739 flgK flagellar hook-a 32.1 3.7E+02 0.0079 27.8 9.9 41 121-161 139-179 (507)
472 PF03908 Sec20: Sec20; InterP 32.1 2.6E+02 0.0056 22.2 9.4 74 147-221 2-75 (92)
473 COG5173 SEC6 Exocyst complex s 32.1 6.3E+02 0.014 27.9 11.6 73 151-226 34-108 (742)
474 COG5185 HEC1 Protein involved 32.0 5.4E+02 0.012 27.7 11.0 92 131-223 274-375 (622)
475 COG5124 Protein predicted to b 32.0 4.5E+02 0.0097 24.9 11.0 40 113-155 70-109 (209)
476 PF12795 MscS_porin: Mechanose 32.0 4.1E+02 0.0088 24.4 10.1 55 151-205 83-137 (240)
477 PF10828 DUF2570: Protein of u 31.9 2.9E+02 0.0064 22.8 7.6 35 150-184 22-56 (110)
478 cd00176 SPEC Spectrin repeats, 31.8 2.9E+02 0.0064 22.7 9.2 52 177-229 75-126 (213)
479 KOG2196 Nuclear porin [Nuclear 31.8 2.2E+02 0.0047 27.8 7.6 30 133-162 128-157 (254)
480 PF13863 DUF4200: Domain of un 31.8 2.8E+02 0.0061 22.5 10.9 81 130-210 23-103 (126)
481 PF05667 DUF812: Protein of un 31.7 4E+02 0.0087 28.7 10.3 32 155-186 344-375 (594)
482 PF14728 PHTB1_C: PTHB1 C-term 31.6 4.8E+02 0.01 26.4 10.4 76 120-199 210-293 (377)
483 PF01494 FAD_binding_3: FAD bi 31.6 15 0.00032 33.1 -0.1 14 9-22 4-17 (356)
484 PF10212 TTKRSYEDQ: Predicted 31.4 4.1E+02 0.0088 28.5 10.1 38 147-184 414-451 (518)
485 PF05278 PEARLI-4: Arabidopsis 31.4 5.1E+02 0.011 25.4 12.5 42 169-210 223-264 (269)
486 PRK06665 flgK flagellar hook-a 31.4 3.6E+02 0.0078 28.9 9.9 58 121-178 139-196 (627)
487 PF00732 GMC_oxred_N: GMC oxid 31.4 15 0.00033 33.3 -0.1 15 9-23 3-17 (296)
488 cd07649 F-BAR_GAS7 The F-BAR ( 31.4 4.4E+02 0.0096 24.7 12.7 108 119-227 98-212 (233)
489 KOG4670 Uncharacterized conser 31.3 27 0.00059 37.1 1.7 82 139-223 368-451 (602)
490 KOG0517 Beta-spectrin [Cytoske 31.2 3E+02 0.0065 34.2 9.8 85 128-213 901-1009(2473)
491 PRK05431 seryl-tRNA synthetase 31.1 1.8E+02 0.0039 29.5 7.4 59 135-193 38-99 (425)
492 COG4980 GvpP Gas vesicle prote 31.0 3.5E+02 0.0076 23.4 8.9 79 122-205 33-114 (115)
493 PF03938 OmpH: Outer membrane 31.0 3.2E+02 0.007 22.9 9.4 88 127-214 31-132 (158)
494 PF05164 ZapA: Cell division p 30.9 1.4E+02 0.0031 22.7 5.2 35 129-163 53-89 (89)
495 KOG0018 Structural maintenance 30.9 2.9E+02 0.0063 32.1 9.4 87 115-210 668-754 (1141)
496 PRK10778 dksA RNA polymerase-b 30.8 1.2E+02 0.0025 27.0 5.3 104 110-223 7-115 (151)
497 KOG0811 SNARE protein PEP12/VA 30.7 2.3E+02 0.005 27.6 7.7 97 120-218 126-224 (269)
498 PF04678 DUF607: Protein of un 30.6 1.4E+02 0.003 26.7 5.8 64 113-177 25-88 (180)
499 cd07623 BAR_SNX1_2 The Bin/Amp 30.5 3.2E+02 0.007 25.0 8.4 80 117-198 36-116 (224)
500 PRK00290 dnaK molecular chaper 30.5 3.8E+02 0.0082 28.2 9.8 88 122-211 501-595 (627)
No 1
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=100.00 E-value=6.5e-59 Score=393.20 Aligned_cols=120 Identities=48% Similarity=0.775 Sum_probs=116.5
Q ss_pred chhHH-HHHHhhhheeeEEecccCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHH
Q 021597 92 KKYGV-IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ 170 (310)
Q Consensus 92 ~~y~l-~a~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~ 170 (310)
..|++ +|++||+|||||||||||||||||||||||+|||++|+|||||||++|++|||||+||||+||+|||+|.|+++
T Consensus 6 ~~~i~paa~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~ 85 (126)
T PF07889_consen 6 SSLIVPAAAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISK 85 (126)
T ss_pred cchhhHHHHHHHHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 021597 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 171 ~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
+|++||+++|+|+++|++|+++||++|++||+||++||+||
T Consensus 86 ~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 86 QIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999998
No 2
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=96.96 E-value=0.0019 Score=53.43 Aligned_cols=90 Identities=14% Similarity=0.315 Sum_probs=46.4
Q ss_pred hHHHHHHhhhheeeEEecccCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 021597 94 YGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (310)
Q Consensus 94 y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~ 173 (310)
++++.++.+++|+++||+ ++- =||+|..+...- +.-.+...|++.|+.+++.. =++
T Consensus 9 w~ii~a~~~~~~~~~~~~---l~~-~~a~~~~~~~l~---------------~~~~~~~~Rl~~lE~~l~~L-----Pt~ 64 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWLW---LRR-TYAKREDIEKLE---------------ERLDEHDRRLQALETKLEHL-----PTR 64 (106)
T ss_pred cHHHHHHHHHHHHHHHHH---HHH-hhccHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhC-----CCH
Confidence 444555567777777774 222 377765554311 11112344555555555444 115
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 174 ~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
++|..++..++++.+|++.+...+++++..++.+
T Consensus 65 ~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 65 DDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555444443
No 3
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.04 E-value=0.25 Score=45.57 Aligned_cols=99 Identities=13% Similarity=0.233 Sum_probs=74.0
Q ss_pred heeeEEe----cccCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021597 104 GYGYVWW----KGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (310)
Q Consensus 104 GYgYmwW----KGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (310)
||++++- .|| +.+=+-.+..++..-+..+-++|+.+.+.|+.+...+.+|-..+..++++.......+++|-..+
T Consensus 66 ~w~~Vr~~~G~~GW-V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 66 NYAQIRDSKGRTAW-IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred CEEEEEeCCCCEEe-EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888874 388 55555566778999999999999999999999999999999999888888766666555555444
Q ss_pred hhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 180 ~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
..+++..+.-++.|+.+++.+...
T Consensus 145 -------~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 145 -------KNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666776666654
No 4
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=95.98 E-value=0.079 Score=52.05 Aligned_cols=10 Identities=40% Similarity=0.956 Sum_probs=7.5
Q ss_pred hhhheeeEEe
Q 021597 101 VAVGYGYVWW 110 (310)
Q Consensus 101 GavGYgYmwW 110 (310)
.++|+||.||
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 6678887777
No 5
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=0.05 Score=52.96 Aligned_cols=63 Identities=17% Similarity=0.429 Sum_probs=32.8
Q ss_pred hhHH-HHHHhhhhee-eEEecccCcCchhhhhhhh--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q 021597 93 KYGV-IVVIVAVGYG-YVWWKGWKLPDMMFATRRS--------LSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (310)
Q Consensus 93 ~y~l-~a~iGavGYg-YmwWKGws~SDlMfVTKRn--------ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~ 156 (310)
-|++ +++.+++-|+ |-.||-| +-=+||.-.++ |.+=...+.|-|.++-+.++..++.++..-+
T Consensus 85 dy~vmAvi~aGi~y~~y~~~K~Y-V~P~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~ 157 (300)
T KOG2629|consen 85 DYFVMAVILAGIAYAAYRFVKSY-VLPRFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS 157 (300)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH-HHHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5766 4455667774 8889999 44456655444 3333333444444444444444444433333
No 6
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=94.77 E-value=1.8 Score=43.56 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=20.6
Q ss_pred cceeccccCcccccccCCCCCCCCCCCCCCC
Q 021597 235 ELVQASRYTLSRTTLELPGITPSSRSGSLHP 265 (310)
Q Consensus 235 ~~~Q~~~s~s~~~ale~~~~~p~sr~~slpp 265 (310)
.-++..++.|.+|+=|+||.-|-.|..--.|
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (553)
T PRK15048 518 SPLTNKPQTPSRPASEQPPAQPRLRIAEQDP 548 (553)
T ss_pred CcccccccccccccccCCccCccCCcCCCCC
Confidence 3345667777888888888777666554443
No 7
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=94.57 E-value=0.26 Score=41.49 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=43.9
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 021597 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (310)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (310)
=|||++-+...=.+--.-|..+-..|... ....+|+-|..+.+.|-|-++..+.++ ..-+.-++.|-....
T Consensus 21 ~YVT~kef~efKd~~~q~L~kiE~~~~~l--~qgeqI~kL~e~V~~QGEqIkel~~e~-------k~qgktL~~I~~~L~ 91 (102)
T PF01519_consen 21 KYVTHKEFDEFKDSNNQRLTKIENKLDQL--AQGEQINKLTEKVDKQGEQIKELQVEQ-------KAQGKTLQLILKTLQ 91 (102)
T ss_dssp TB-BHHHHHHH---HTTB-BHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 38999988865543334444444444422 334444444444444444444444444 355555677777777
Q ss_pred HHHHHHHHhhh
Q 021597 199 TLESKLIEIEG 209 (310)
Q Consensus 199 ~Le~Ki~~ie~ 209 (310)
.+..+||+||+
T Consensus 92 ~inkRLD~~E~ 102 (102)
T PF01519_consen 92 SINKRLDKMES 102 (102)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHhhccC
Confidence 77789998874
No 8
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=93.76 E-value=1.2 Score=35.09 Aligned_cols=72 Identities=13% Similarity=0.237 Sum_probs=57.2
Q ss_pred hHHHHHHH---HHHHHHHHHHhHhhhhhhHHHHHHHHHHH--HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 136 QLEDVYSS---ISAAQRQLSSKITSVDRDVNKIVEISQAT--QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 136 qLeqVs~s---L~~aKrhLsqRI~~vD~klde~~eis~~i--~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
.|+++.+. +.....+|..+|+++..+|+++.++.... -+.+. -..++.+|..+|.+++..+..|..|+..|+
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444 45567899999999999999999866544 34444 888999999999999999999999998875
No 9
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.72 E-value=2.8 Score=39.22 Aligned_cols=91 Identities=24% Similarity=0.260 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhHH-HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 021597 126 LSDACNSVARQLE-DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (310)
Q Consensus 126 ms~Av~sv~KqLe-qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (310)
|++|...|-.|.+ .+...-..+......+|+.+........+-....++|+.+++..+.....++++++.....||..|
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 8899999988877 445566688889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHhH
Q 021597 205 IEIEGKQDITTL 216 (310)
Q Consensus 205 ~~ie~kQd~Tn~ 216 (310)
..++..-+....
T Consensus 247 ~~le~~~~~~~~ 258 (312)
T PF00038_consen 247 RELEQRLDEERE 258 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988865444333
No 10
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.38 E-value=0.96 Score=45.34 Aligned_cols=86 Identities=12% Similarity=0.171 Sum_probs=62.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 021597 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
.+..++++....+...++.+...|+.+..++++...-...++.++..++.++.+++.+++.+...+..++.++..++.+-
T Consensus 192 ~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l 271 (562)
T PHA02562 192 HIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI 271 (562)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555566666677888888888888888888888888888888888888888888888888887777665
Q ss_pred hHHhHH
Q 021597 212 DITTLG 217 (310)
Q Consensus 212 d~Tn~G 217 (310)
......
T Consensus 272 ~~~~~~ 277 (562)
T PHA02562 272 EQFQKV 277 (562)
T ss_pred HHHHHH
Confidence 444433
No 11
>PRK11637 AmiB activator; Provisional
Probab=93.26 E-value=1.2 Score=44.04 Aligned_cols=81 Identities=11% Similarity=0.154 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH
Q 021597 125 SLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~---~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (310)
...+=...+-+++++....+. ..++++.+.|+.++.++++..+-...++.++..+..+++....++...+.-+..++
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555444 33444556667777777766666666666666666666666666666666655555
Q ss_pred HHHH
Q 021597 202 SKLI 205 (310)
Q Consensus 202 ~Ki~ 205 (310)
..+.
T Consensus 124 ~~l~ 127 (428)
T PRK11637 124 RLLA 127 (428)
T ss_pred HHHH
Confidence 5543
No 12
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=93.12 E-value=1.5 Score=44.25 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=11.5
Q ss_pred CCchhHH--HHHHhhhheeeEEe
Q 021597 90 GAKKYGV--IVVIVAVGYGYVWW 110 (310)
Q Consensus 90 gg~~y~l--~a~iGavGYgYmwW 110 (310)
+|..+++ ++++-++|+||-||
T Consensus 35 ~g~~l~~~aili~la~g~g~y~~ 57 (390)
T PRK10920 35 TGLVLSAVAIAIALAAGAGLYYH 57 (390)
T ss_pred ccHHHHHHHHHHHHHHhhHHHHH
Confidence 3444444 23344777777666
No 13
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.89 E-value=2.8 Score=38.80 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=59.5
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 021597 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (310)
.++.++......+.++..+||+..++.-++..+-.++.++|+..++.-.++...-+++.+.-+..|+.+++.++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555667778888888888888888888888888888888887777777777777777778888777776543
No 14
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.39 E-value=0.18 Score=49.82 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aK---rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (310)
.+|+.++.++...|..++..|++-+ .+|+..|..+...+.+.....-.++..|..+..|+.+.+.||-...-.|..|
T Consensus 66 ~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdL 145 (326)
T PF04582_consen 66 QDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDL 145 (326)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhH
Confidence 3444555555555555554444433 3456667777777777777777777888888888888888888888888888
Q ss_pred HHHHHHhhhh
Q 021597 201 ESKLIEIEGK 210 (310)
Q Consensus 201 e~Ki~~ie~k 210 (310)
|.+|..+|..
T Consensus 146 e~RV~~LEs~ 155 (326)
T PF04582_consen 146 ESRVKALESG 155 (326)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcC
Confidence 8888887754
No 15
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=92.11 E-value=2.8 Score=36.36 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 021597 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (310)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~ 177 (310)
+|+-+=.|||.|+.=...|..+||+.-|-...+|++++
T Consensus 30 ~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLs 67 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLS 67 (126)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777777777666666666543
No 16
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=92.10 E-value=3.5 Score=35.77 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~ 173 (310)
|.+-+-|.-...||.+-.+.++....+|.+||-.+|..+....+...+-+
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erq 76 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQ 76 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999998877655444333
No 17
>PRK11637 AmiB activator; Provisional
Probab=91.57 E-value=1.7 Score=43.02 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=43.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 131 NSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLs---qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
+.+-++|+++...|...++.+. +++..+..++++..+=...+.+++..++.+++.+..+++.++.-+..++.+|+..
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555555 5555555555555544555555555555555555555555555555555555555
Q ss_pred h
Q 021597 208 E 208 (310)
Q Consensus 208 e 208 (310)
+
T Consensus 123 ~ 123 (428)
T PRK11637 123 E 123 (428)
T ss_pred H
Confidence 4
No 18
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.98 E-value=4.2 Score=35.37 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=53.0
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (310)
.|+.||+-|...|++...--+.+.+.+.++....+.+..-+..+..-...+|.|++.++.+-.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 477888888888888888888888888888888888888888888888888888888886643
No 19
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=90.71 E-value=3.7 Score=32.37 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=20.6
Q ss_pred hHHhHHHHHHHHHHHhhcc-CCCccceecccc
Q 021597 212 DITTLGVKKLCDRARELEN-GRPTELVQASRY 242 (310)
Q Consensus 212 d~Tn~GV~~LC~f~~~~~~-~~~~~~~Q~~~s 242 (310)
......+..+|.|++..-. +...+++|..+.
T Consensus 85 ~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~ 116 (127)
T smart00502 85 TQKQEKLSHAINFTEEALNSGDPTELLLSKKL 116 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 3456778888998876544 455677776544
No 20
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=90.63 E-value=12 Score=33.25 Aligned_cols=97 Identities=21% Similarity=0.313 Sum_probs=51.7
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH----HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-hhhhHHHHHH
Q 021597 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQ----LSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-LIGDEFQSVR 194 (310)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKrh----LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~-~ig~Dv~~v~ 194 (310)
+|||..+.+..-..-..+.++-..+...+|+ |....+.|...+|.. -+.+++|+..++.++. .|..+=..++
T Consensus 43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l---~~~L~~ei~~l~a~~klD~n~eK~~~r 119 (177)
T PF07798_consen 43 LVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKL---RQELREEINKLRAEVKLDLNLEKGRIR 119 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6889888887777777777777666655554 333344444444333 3345555555544332 1111122444
Q ss_pred HHHHHHHHHHHHhhhhhhHHhHHHH
Q 021597 195 DIVQTLESKLIEIEGKQDITTLGVK 219 (310)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (310)
.....+|.||.+++.+-+....++.
T Consensus 120 ~e~~~~~~ki~e~~~ki~~ei~~lr 144 (177)
T PF07798_consen 120 EEQAKQELKIQELNNKIDTEIANLR 144 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444443
No 21
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=90.29 E-value=3.8 Score=33.19 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 021597 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (310)
Q Consensus 141 s~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (310)
..+|.++-+.|.+-|++|+..++...+..... .++...+..++.|-..+-+-..+.+.+...+|..|.-.-..+.+
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777766544433 44555556666666666666666677777777776666666655
Q ss_pred HHHHH
Q 021597 221 LCDRA 225 (310)
Q Consensus 221 LC~f~ 225 (310)
..+-+
T Consensus 79 a~e~I 83 (89)
T PF13747_consen 79 AIETI 83 (89)
T ss_pred HHHHH
Confidence 55444
No 22
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=90.29 E-value=2.6 Score=44.35 Aligned_cols=88 Identities=17% Similarity=0.286 Sum_probs=68.5
Q ss_pred cCchhhh----hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 021597 115 LPDMMFA----TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (310)
Q Consensus 115 ~SDlMfV----TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv 190 (310)
++++.|+ +||||...++ +.+=.....+-..=+.+..+|+++...++++++....+++.+...+.+...+-.++
T Consensus 6 L~~~~~~nt~~aRr~LR~~iE---~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~ 82 (618)
T PF06419_consen 6 LSEFGFENTLEARRNLRSDIE---KRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEA 82 (618)
T ss_pred hcccccCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666776 8999876554 55556666666777788899999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 021597 191 QSVRDIVQTLESKLI 205 (310)
Q Consensus 191 ~~v~~~V~~Le~Ki~ 205 (310)
+.++.--..+|.|-.
T Consensus 83 ~~L~~~~~~~~~k~~ 97 (618)
T PF06419_consen 83 SELREQKEELELKKK 97 (618)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887755544444433
No 23
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=90.13 E-value=11 Score=32.31 Aligned_cols=15 Identities=7% Similarity=0.337 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhcC
Q 021597 61 LLAEVSSVQQELSHV 75 (310)
Q Consensus 61 L~aQV~~LaqElr~L 75 (310)
+...++.++++.+.|
T Consensus 45 ~~~~i~~ia~qt~lL 59 (213)
T PF00015_consen 45 ILSLINEIAEQTNLL 59 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHh
Confidence 777777777777777
No 24
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.70 E-value=6.2 Score=44.57 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=77.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 021597 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (310)
Q Consensus 134 ~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (310)
-+..++.-+.+...=+...+++...+.++-+..+-.+.+++|++.-.+.++.+..|++..+..+..++.++.+++..-+-
T Consensus 290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~ 369 (1074)
T KOG0250|consen 290 IKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRK 369 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555556667777777777777788888889999999999999999999999999999999999988888
Q ss_pred HhHHHHHHHHHHHhhccC
Q 021597 214 TTLGVKKLCDRARELENG 231 (310)
Q Consensus 214 Tn~GV~~LC~f~~~~~~~ 231 (310)
.-.-+++||.-+..++..
T Consensus 370 ~k~~~d~l~k~I~~~~~~ 387 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQ 387 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888899999888765543
No 25
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=88.69 E-value=15 Score=31.62 Aligned_cols=23 Identities=9% Similarity=0.266 Sum_probs=8.4
Q ss_pred hhchhhhhhHHHHHHHHHHHHHH
Q 021597 180 RGRSKLIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 180 ~~dl~~ig~Dv~~v~~~V~~Le~ 202 (310)
...+..|...++.+...+..+..
T Consensus 134 ~~~l~~i~~~~~~i~~~i~~i~~ 156 (213)
T PF00015_consen 134 SESLEEIAESVEEISDSIEEISE 156 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhHHhhhhHHHHh
Confidence 33333333333333333333333
No 26
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.53 E-value=8.3 Score=35.71 Aligned_cols=77 Identities=9% Similarity=0.190 Sum_probs=60.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
....++..+--+.+...|+.|.++|+.+...++....-.+..+..|...+..+..+..+++++..+-..|..=|.++
T Consensus 34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m 110 (251)
T PF11932_consen 34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQM 110 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667778888899999999999998888888888888888888888888888888887666666554443
No 27
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=87.99 E-value=11 Score=30.66 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh---HHHHHHHHHHHHHHHHHHhhhh
Q 021597 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD---EFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~---Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
-|...-+..+.|...+++.......-.+.......+++.-+.+|.. .|..+-.+|..||.-..++|.|
T Consensus 25 LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 25 LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666555555555555544 6666666676666666666654
No 28
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=87.65 E-value=3.9 Score=43.43 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021597 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (310)
.+..+.+.+.+|+..++.++.+...-+.+++..+.++
T Consensus 375 ~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l 411 (656)
T PRK06975 375 QAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDL 411 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666655555444444444433
No 29
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=87.51 E-value=8.6 Score=37.38 Aligned_cols=99 Identities=12% Similarity=0.161 Sum_probs=73.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh--------------
Q 021597 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD-------------- 188 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~-------------- 188 (310)
-+.+-.=..++..|+|.++..|...+.+|...+..+|.--++..+..+++..-+...+..+..+..
T Consensus 86 ~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d~ 165 (333)
T PF05816_consen 86 LERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGDQ 165 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccCH
Confidence 344444468999999999999999999999999999988777777666666554443333333332
Q ss_pred ----HHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 021597 189 ----EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (310)
Q Consensus 189 ----Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (310)
....+.+.+..||.|+..++-.+.++..+.--+
T Consensus 166 ~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqi 202 (333)
T PF05816_consen 166 MDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQI 202 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345667788999999999998888887776543
No 30
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=87.41 E-value=5.9 Score=31.12 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 021597 189 EFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~i 207 (310)
.++.+-+.|..++..+.++
T Consensus 69 ~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 69 KVDPVFEAVADLGESVSEL 87 (90)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 31
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=87.14 E-value=12 Score=31.19 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 021597 126 LSDACNSVARQLEDVYSSI 144 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL 144 (310)
|.+.+..+..+++.+.+.|
T Consensus 3 l~~~~~~l~~~~~~l~~~l 21 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERL 21 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 32
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=86.88 E-value=6.8 Score=40.74 Aligned_cols=51 Identities=6% Similarity=0.090 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 021597 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 161 klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
+|.++++-++++++++..+|.+++.+....+..++.++.||..+.+++..+
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444454455555555555544444333333444444444555554444443
No 33
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=86.87 E-value=7.2 Score=42.24 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=24.1
Q ss_pred HHHHHHhHHHHHHH-HHHHHHHHHHhHhhhhhhH
Q 021597 130 CNSVARQLEDVYSS-ISAAQRQLSSKITSVDRDV 162 (310)
Q Consensus 130 v~sv~KqLeqVs~s-L~~aKrhLsqRI~~vD~kl 162 (310)
++++.+|+++|-.. ...++.|+...|++.+..+
T Consensus 189 l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~l 222 (806)
T PF05478_consen 189 LNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLL 222 (806)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 45667777777777 7778888888888777654
No 34
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.78 E-value=15 Score=32.20 Aligned_cols=8 Identities=13% Similarity=0.422 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 021597 219 KKLCDRAR 226 (310)
Q Consensus 219 ~~LC~f~~ 226 (310)
.+|++.++
T Consensus 175 ~~l~~~~~ 182 (191)
T PF04156_consen 175 QQLEEKIQ 182 (191)
T ss_pred HHHHHHHH
Confidence 33444433
No 35
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.30 E-value=15 Score=38.19 Aligned_cols=121 Identities=13% Similarity=0.271 Sum_probs=73.3
Q ss_pred hheeeEEecccCcCchhhhhh--------------------hhHHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhhh
Q 021597 103 VGYGYVWWKGWKLPDMMFATR--------------------RSLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVD 159 (310)
Q Consensus 103 vGYgYmwWKGws~SDlMfVTK--------------------Rnms~Av~sv~KqLeqVs~sL~---~aKrhLsqRI~~vD 159 (310)
-||-=|-=+|..|.++=.-.+ +.....+..+.++++++|+.|. .||+...+.+..+.
T Consensus 237 ~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~ 316 (569)
T PRK04778 237 AGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLP 316 (569)
T ss_pred HHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 355556667888887532222 2334566677788888888776 46777777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhc----------hhhhhhHHHHHH---------------------HHHHHHHHHHHHhh
Q 021597 160 RDVNKIVEISQATQEEVTILRGR----------SKLIGDEFQSVR---------------------DIVQTLESKLIEIE 208 (310)
Q Consensus 160 ~klde~~eis~~i~~eV~~v~~d----------l~~ig~Dv~~v~---------------------~~V~~Le~Ki~~ie 208 (310)
+.++...+-.+.++.|+..++.. +..+..+++.+. .....|..++..++
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie 396 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIE 396 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77777777766666666666655 333444443333 33445555566666
Q ss_pred hhhhHHhHHHHHHHH
Q 021597 209 GKQDITTLGVKKLCD 223 (310)
Q Consensus 209 ~kQd~Tn~GV~~LC~ 223 (310)
..|.--..-|..|+.
T Consensus 397 ~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 397 KEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666655555555543
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.27 E-value=12 Score=37.54 Aligned_cols=50 Identities=6% Similarity=0.130 Sum_probs=23.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 021597 157 SVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 157 ~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (310)
.+..++.+........++++.........+..++++++..+..++.++.+
T Consensus 334 ~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~ 383 (562)
T PHA02562 334 EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAK 383 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHH
Confidence 33333444333334444444444455555555555555555555444443
No 37
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=86.16 E-value=14 Score=32.84 Aligned_cols=83 Identities=12% Similarity=0.247 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~-~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (310)
.++..+..+-.||..+.+.|...-..+..|++.+-..|++. ..+++.+|.|.+.+..++.+.-..|-++......|=..
T Consensus 35 ql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin~tLnnLl~a 114 (140)
T PF04513_consen 35 QLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSSVTNINATLNNLLQA 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35677888888888888888888888888888777777654 45667888888888888877777777776665555555
Q ss_pred HHHh
Q 021597 204 LIEI 207 (310)
Q Consensus 204 i~~i 207 (310)
+.-+
T Consensus 115 ln~l 118 (140)
T PF04513_consen 115 LNNL 118 (140)
T ss_pred HHHh
Confidence 5444
No 38
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=85.83 E-value=55 Score=35.89 Aligned_cols=102 Identities=10% Similarity=0.185 Sum_probs=61.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 021597 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (310)
.+-+..+-..+....+.-...|..+..+++.+..++.......+.-++.+ ..+..|+..+..++..-.++|..
T Consensus 372 k~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri-------~~LE~ELr~l~~~A~E~q~~Lns 444 (717)
T PF09730_consen 372 KAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERI-------SELEKELRALSKLAGESQGSLNS 444 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444444444555556666677777777777777777655555554444 44455566666666666677766
Q ss_pred hhhhhhHHhHHHHHHHHHHHhhccCCCccc
Q 021597 207 IEGKQDITTLGVKKLCDRARELENGRPTEL 236 (310)
Q Consensus 207 ie~kQd~Tn~GV~~LC~f~~~~~~~~~~~~ 236 (310)
-..-=..--..+.-|+.++ ++-|+-.|..
T Consensus 445 AQDELvtfSEeLAqLYHHV-C~cNgeTPnR 473 (717)
T PF09730_consen 445 AQDELVTFSEELAQLYHHV-CMCNGETPNR 473 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHccCCCCcc
Confidence 5555444455666666666 5555555554
No 39
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=85.64 E-value=12 Score=33.57 Aligned_cols=87 Identities=11% Similarity=0.171 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHH--HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 021597 137 LEDVYSSISAAQRQ--LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (310)
Q Consensus 137 LeqVs~sL~~aKrh--LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (310)
=+++++.|....+| +.+||+.|....+...+-++.|..++.+++.+|..+- ..-+.|+..+...+...
T Consensus 11 d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~----------~~~~~~~~~~~~~~~~~ 80 (188)
T PF10018_consen 11 DDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP----------DQADEKLKSIPKAEKRP 80 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhccccccccccCC
Confidence 34444444444444 4566777776666666666666666666665544433 22223334444333322
Q ss_pred hHHHHHHHHHHHhhccCCCc
Q 021597 215 TLGVKKLCDRARELENGRPT 234 (310)
Q Consensus 215 n~GV~~LC~f~~~~~~~~~~ 234 (310)
- -+..|..|++++.....+
T Consensus 81 v-~~~eLL~YA~rISk~t~~ 99 (188)
T PF10018_consen 81 V-DYEELLSYAHRISKFTSA 99 (188)
T ss_pred C-CHHHHHHHHHHHHHhcCC
Confidence 2 277888999887655444
No 40
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=85.53 E-value=8.7 Score=30.85 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHH----HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 021597 144 ISAAQRQLSSKITSVDRDVNKIVEISQA----TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~----i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (310)
+-++.+++.+|++.=-..|.++.+.++. ++.+...=...+..+..|++.++.-++.|..|+..
T Consensus 16 ~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 16 ILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777666643 44555566667788889999999999999988864
No 41
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.29 E-value=6.4 Score=38.13 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 021597 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (310)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (310)
|.-+..+...++.+...|+.+|.++++...=....++++++.+.++.....||+.+..-+......+
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777888888999999999998888888888888888888888888887776655444433
No 42
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=84.98 E-value=4.1 Score=37.70 Aligned_cols=57 Identities=16% Similarity=0.309 Sum_probs=35.1
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
+..|+-+|..|+|.+.|.-..+-+.+.+-++--...+.|+..+.+-+..||.|++.|
T Consensus 77 vA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 77 VASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666555555555555444455566667777777777777777654
No 43
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=84.86 E-value=2.2 Score=35.23 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=46.0
Q ss_pred HHhhhheeeEEecccCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 021597 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (310)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~ 178 (310)
++.-+|.||+=.+- +..|+++|..||+.++..+++..+..+..+++++.
T Consensus 70 v~v~iG~g~~vE~~-------------------------------~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 70 VLVSIGSGYYVEKD-------------------------------AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred EEEEcCCCEEEEec-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55578999987764 47899999999999999999999999999999887
Q ss_pred hhhchh
Q 021597 179 LRGRSK 184 (310)
Q Consensus 179 v~~dl~ 184 (310)
+...+.
T Consensus 119 i~~~l~ 124 (126)
T TIGR00293 119 LEQEAQ 124 (126)
T ss_pred HHHHHh
Confidence 766544
No 44
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.82 E-value=12 Score=34.66 Aligned_cols=66 Identities=11% Similarity=0.258 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (310)
|.+-++.+..+|++.......-+.++.++++..+....+.++=-++.++++..++.++....-+.+
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555555555544433333333
No 45
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=84.38 E-value=4.3 Score=32.57 Aligned_cols=52 Identities=8% Similarity=0.240 Sum_probs=25.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021597 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (310)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~ 180 (310)
++++.|..+.+.++.++...+..+ .+++.+..|||.+.+-...+.+.|++++
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~-~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNL-PDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444433 3444455555555555555555444443
No 46
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.01 E-value=11 Score=38.58 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=64.4
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 021597 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (310)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (310)
++|+|....|++.. ++|....++..+...-.+..+.++..+..-+.++..|++.+++.+..++..|..++..+ ..
T Consensus 38 ~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~ 112 (420)
T COG4942 38 KQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-RE 112 (420)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HH
Confidence 88888888877654 45556666677777777788888888888999999999999999999999999888766 66
Q ss_pred hHHHHHH
Q 021597 215 TLGVKKL 221 (310)
Q Consensus 215 n~GV~~L 221 (310)
..++...
T Consensus 113 qr~~La~ 119 (420)
T COG4942 113 QRRRLAE 119 (420)
T ss_pred HHHHHHH
Confidence 6666544
No 47
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.00 E-value=13 Score=37.08 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHhHhhhh-------hhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 021597 123 RRSLSDACNSVARQLEDVYSSISAAQ-------RQLSSKITSVD-------RDVNKIVEISQATQEEVTILRGRSKLIGD 188 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aK-------rhLsqRI~~vD-------~klde~~eis~~i~~eV~~v~~dl~~ig~ 188 (310)
+.+++++...+..||+.+++.|..+- +||.++++.+- ++|.+..+--++...-|++....|.+|.+
T Consensus 229 ~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Ise 308 (359)
T PF10498_consen 229 KKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISE 308 (359)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444444444444443 44444444332 33333333333344446666666666666
Q ss_pred HHHHHHHHH
Q 021597 189 EFQSVRDIV 197 (310)
Q Consensus 189 Dv~~v~~~V 197 (310)
+++.+++-+
T Consensus 309 eLe~vK~em 317 (359)
T PF10498_consen 309 ELEQVKQEM 317 (359)
T ss_pred HHHHHHHHH
Confidence 666665433
No 48
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=83.86 E-value=31 Score=34.84 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 021597 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (310)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V 197 (310)
+.++.+...=.+++.-.+.+....++|.+..+++...+.++...+.++-...+.+...+
T Consensus 270 ~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~~~~~ 328 (553)
T PRK15048 270 EGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLA 328 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555566666666666666666655555555555555544444444433
No 49
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=83.69 E-value=19 Score=33.30 Aligned_cols=68 Identities=13% Similarity=0.264 Sum_probs=49.9
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 021597 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (310)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (310)
-.||+.|..+|.+...+.........++...+..+-.|++....-+..+|.|+..++..-.....-+.
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 45666666677777777777777777888888888888888888888888888888765444444443
No 50
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.56 E-value=40 Score=31.80 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 021597 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (310)
Q Consensus 161 klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (310)
-|.|...-......|=...-+.|-+|..|+..+..++..++.--.+.+.+=...-.-+.-|=+++.
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445444455556666666666666655555444444443333333444444443
No 51
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=83.21 E-value=30 Score=30.13 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 161 klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
.+++..+....+.+.+..+...+.+....++.....+..+..++..+
T Consensus 40 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 86 (262)
T smart00283 40 NADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEEL 86 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333
No 52
>PRK09039 hypothetical protein; Validated
Probab=82.87 E-value=17 Score=35.80 Aligned_cols=87 Identities=9% Similarity=0.218 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-------hhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-------LIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~-------~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
|+..++....+..++..|+..+.++|++.+..+...+-+|..++..++ .+...++.....-.....||+.++.
T Consensus 100 Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 100 LQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445577888888888888888887766555555444444 4444444444444455555555555
Q ss_pred hhhHHhHH-HHHHHH
Q 021597 210 KQDITTLG-VKKLCD 223 (310)
Q Consensus 210 kQd~Tn~G-V~~LC~ 223 (310)
.=+.+.+- +..|-+
T Consensus 180 ~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 180 RLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 44444333 444433
No 53
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.57 E-value=21 Score=38.76 Aligned_cols=76 Identities=17% Similarity=0.299 Sum_probs=50.2
Q ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 021597 126 LSDACNSVARQ-LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (310)
Q Consensus 126 ms~Av~sv~Kq-LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (310)
+..|+..+-.+ ++ -...|+.++..|+..+-...++|.+-.+..+++...++..-+.+.+-++.+.+.=+.|..|+
T Consensus 541 L~~a~~vlreeYi~----~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 541 LSQATKVLREEYIE----KQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666654 33 34578999999999999999998888887777775555555544444554444444444444
Q ss_pred H
Q 021597 205 I 205 (310)
Q Consensus 205 ~ 205 (310)
+
T Consensus 617 ~ 617 (717)
T PF10168_consen 617 D 617 (717)
T ss_pred H
Confidence 4
No 54
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=82.53 E-value=11 Score=27.23 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=29.1
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 021597 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
+.|+.+..++.+.+++...|.++|.+=..-|.+|..+++....-+..=-.+|.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ 56 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLK 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655555555555555555444443333333
No 55
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=82.46 E-value=43 Score=31.34 Aligned_cols=38 Identities=34% Similarity=0.433 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhH---HhHHHHHHHHHHHh
Q 021597 190 FQSVRDIVQTLESKLIEIEGKQDI---TTLGVKKLCDRARE 227 (310)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd~---Tn~GV~~LC~f~~~ 227 (310)
...+++=|..-..||.++|.+|+- .|.=+.-||-+..+
T Consensus 103 a~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDe 143 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDE 143 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 445666688888899999988864 57788899988855
No 56
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=82.38 E-value=5.8 Score=39.51 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=10.1
Q ss_pred HHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 021597 199 TLESKLIEIEGKQDITTLGVKKLCDRA 225 (310)
Q Consensus 199 ~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (310)
.|-.||.+|..+=..|-.=|..+|+=+
T Consensus 68 ~L~~~i~~ik~kA~~sE~~V~~it~dI 94 (383)
T PF04100_consen 68 ELFEKISEIKSKAEESEQMVQEITRDI 94 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 57
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=82.28 E-value=11 Score=32.82 Aligned_cols=25 Identities=8% Similarity=0.294 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh
Q 021597 187 GDEFQSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
..||+.++.-|..|+.+|.++..++
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l~~~k 132 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERLANKK 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4788999988888888888887653
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=82.10 E-value=27 Score=36.39 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHhc
Q 021597 58 FNDLLAEVSSVQQELSH 74 (310)
Q Consensus 58 ~~dL~aQV~~LaqElr~ 74 (310)
|.++..+|..|+++|.+
T Consensus 251 ~~~i~~~i~~l~~~i~~ 267 (569)
T PRK04778 251 HLDIEKEIQDLKEQIDE 267 (569)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 43488888888888888
No 59
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=81.98 E-value=10 Score=31.40 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=44.9
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh--hhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 021597 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI--GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (310)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i--g~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (310)
..+++.+++++++ ..+-++.+..++.+. .+|+..++-.+..+++++..+++.=+--++-+.+|.+
T Consensus 34 ~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 34 REDIEKLEERLDE-------HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444443 344556666666777 7888888888888888888888887766777777754
No 60
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=81.91 E-value=6.9 Score=35.40 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=46.9
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 146 ~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
.-...|..+.+.|..++++..+.-+...++|-- =.|=+=+.+|+.+...+..||.+|..+|.
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvs--Yqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVS--YQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444556667777777777777777777888743 34557788999999999999999999663
No 61
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.65 E-value=6.4 Score=35.28 Aligned_cols=96 Identities=19% Similarity=0.348 Sum_probs=45.0
Q ss_pred CcCchhhhhhhhHHH---HHHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021597 114 KLPDMMFATRRSLSD---ACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (310)
Q Consensus 114 s~SDlMfVTKRnms~---Av~sv~KqLeqVs~sL~~aKrhLsq---RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig 187 (310)
++.+..+..+.-|+. .+..+..+|-...+.+..-++.+.. +|..+...+....+=.+...+++.+....++.+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777766664 4677788888888888777776655 4555555555555556666688888889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 021597 188 DEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
+++..++--...+|.|+..++.
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 62
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=81.52 E-value=6.6 Score=31.52 Aligned_cols=22 Identities=23% Similarity=0.441 Sum_probs=10.1
Q ss_pred HHHHHHHHhHhhhhhhHHHHHH
Q 021597 146 AAQRQLSSKITSVDRDVNKIVE 167 (310)
Q Consensus 146 ~aKrhLsqRI~~vD~klde~~e 167 (310)
.++++|..-|+.+.+.|++..+
T Consensus 39 ~~~~eL~~~l~~ie~~L~DL~~ 60 (97)
T PF09177_consen 39 WLKRELRNALQSIEWDLEDLEE 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 63
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=81.49 E-value=27 Score=36.08 Aligned_cols=94 Identities=17% Similarity=0.320 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHhHHHHHHH------------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH-----hhhchhhh
Q 021597 124 RSLSDACNSVARQLEDVYSS------------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI-----LRGRSKLI 186 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~s------------L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~-----v~~dl~~i 186 (310)
+.+..-++++-.++.+|.++ +.+.|++|+.+-|+|=.|.|+.+.+.+.+|++|.. ....|+.+
T Consensus 176 ~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v 255 (426)
T smart00806 176 TEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETV 255 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34555566666667777654 55679999999999999999999999999999743 22345555
Q ss_pred hhHHHHHHHHHH---------------HHHHHHHHhhhhhhHHhHH
Q 021597 187 GDEFQSVRDIVQ---------------TLESKLIEIEGKQDITTLG 217 (310)
Q Consensus 187 g~Dv~~v~~~V~---------------~Le~Ki~~ie~kQd~Tn~G 217 (310)
..||+....-+. .||.-|+.|..-|+|=|.=
T Consensus 256 ~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQ 301 (426)
T smart00806 256 QKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQ 301 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556555554444 4667778888888876653
No 64
>PRK04406 hypothetical protein; Provisional
Probab=81.14 E-value=7.8 Score=30.63 Aligned_cols=47 Identities=9% Similarity=0.103 Sum_probs=34.4
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 021597 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (310)
Q Consensus 146 ~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~ 192 (310)
.+...+.+||+.|..++--|...++...+.|++-+..+......+..
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~ 50 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKY 50 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999888888888887776665444433333
No 65
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.13 E-value=31 Score=31.50 Aligned_cols=47 Identities=9% Similarity=0.186 Sum_probs=34.7
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 021597 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (310)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (310)
.....++..|++.+..+++++++-.+..++++.+.+..+..-..++.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888888888888887777777776655
No 66
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.58 E-value=7.3 Score=29.93 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=34.9
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
+..||+.|..|+--+.+..+...+.|+.-+.. |+.++..+..|..||..++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~-------I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQ-------IDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 56788888888888888888888888666655 56666666666677777663
No 67
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=80.39 E-value=20 Score=28.15 Aligned_cols=29 Identities=7% Similarity=0.289 Sum_probs=13.9
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 021597 119 MFATRRSLSDACNSVARQLEDVYSSISAA 147 (310)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~a 147 (310)
++.+-+++......+.+.++++.+.+...
T Consensus 17 l~~~l~~l~~~l~~~~~ti~~l~~~~~~i 45 (90)
T PF06103_consen 17 LIKVLKKLKKTLDEVNKTIDTLQEQVDPI 45 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455555555555554444444444333
No 68
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=80.15 E-value=22 Score=31.90 Aligned_cols=88 Identities=10% Similarity=0.198 Sum_probs=51.4
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh----hchhhhhhHHHHHHHH
Q 021597 122 TRRSLSDACNSVARQLEDVYSSI-SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR----GRSKLIGDEFQSVRDI 196 (310)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL-~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~----~dl~~ig~Dv~~v~~~ 196 (310)
|-.++-+-++.....-+.+.+.+ ..+|..|.++|..|-..+.+..+-++.+.+++...+ .|...+..|+..++.+
T Consensus 78 ~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~ 157 (184)
T PF05791_consen 78 LNQDIINYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSI 157 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55555555554444444444443 357888999999888776666665555555554443 3555666666666666
Q ss_pred HHHHHHHHHHhhh
Q 021597 197 VQTLESKLIEIEG 209 (310)
Q Consensus 197 V~~Le~Ki~~ie~ 209 (310)
+.+-.+.|..++.
T Consensus 158 l~~~~g~I~~L~~ 170 (184)
T PF05791_consen 158 LAGENGDIPQLQK 170 (184)
T ss_dssp HHHTT--HHHHHH
T ss_pred HhcccCCHHHHHH
Confidence 6666666655554
No 69
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=79.96 E-value=28 Score=32.72 Aligned_cols=114 Identities=20% Similarity=0.235 Sum_probs=66.3
Q ss_pred hhHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhHhh-------hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH---HH
Q 021597 124 RSLSDACNSVA--RQLEDVYSSISAAQRQLSSKITS-------VDRDVNKIVEISQATQEEVTILRGRSKLIGDE---FQ 191 (310)
Q Consensus 124 Rnms~Av~sv~--KqLeqVs~sL~~aKrhLsqRI~~-------vD~klde~~eis~~i~~eV~~v~~dl~~ig~D---v~ 191 (310)
|.|-+|...++ +.|++..+.|-.|+..|.-=|+- +=+-+|.+..++..+.++...++....++-.. .+
T Consensus 26 R~LHdsl~~lg~d~~l~~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~~~~~~~ 105 (214)
T PRK11166 26 RMLRDSLRELGLDQAIEEAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFANPIELA 105 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 56777777765 77788888888888877644332 22233444444444555555554443332211 34
Q ss_pred HHHHHHHHHHHHHHHhh-----------------hhhhHHhHHHHHHHHHHHhhccCCCccce
Q 021597 192 SVRDIVQTLESKLIEIE-----------------GKQDITTLGVKKLCDRARELENGRPTELV 237 (310)
Q Consensus 192 ~v~~~V~~Le~Ki~~ie-----------------~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~ 237 (310)
.++.++......|.++. .=||.|-+=|....+.++.+|..-..-++
T Consensus 106 e~~~L~~~~~~fL~~v~~~t~~~~~~L~eI~mAqdFQDLTGQvI~kVi~~v~~vE~~L~~ll~ 168 (214)
T PRK11166 106 DARELVTDTRAFLADVPEHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLL 168 (214)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHccchHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333 33888998888888888877766544443
No 70
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=79.61 E-value=5.4 Score=39.42 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (310)
+.++.|..+-++||.|+.=.-+--..|..|++.|..+.|+ -..-+--+++..++++++..++.|+..+-.-
T Consensus 45 ~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~-~~~~~~~~~~~~~lr~~l~~~~~em~~L~~f 115 (310)
T KOG1161|consen 45 DESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA-LSLEPPSAEEMKELREELVDFHGEMVLLENF 115 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999985 2222223356677777778888877766543
No 71
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=79.56 E-value=4.9 Score=32.65 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=26.4
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021597 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (310)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ 185 (310)
.++|..||+.+...+++..+....+++++..++..+.+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777777777777777666655443
No 72
>PRK14011 prefoldin subunit alpha; Provisional
Probab=79.32 E-value=4.5 Score=35.60 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021597 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (310)
.+..|+++|..||+.|+..+++..+..+.+.+++.+++..
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999888888888666654
No 73
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=79.26 E-value=5.1 Score=33.20 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021597 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (310)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ 185 (310)
+..|++.+..||+.+...+++..+....++++++.+...+.+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888888888888888888777777777776665543
No 74
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=79.03 E-value=8.7 Score=30.37 Aligned_cols=78 Identities=15% Similarity=0.320 Sum_probs=42.0
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 021597 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (310)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (310)
|+-+++-+.+...-++..+......-...++.+..++++.=.+||=. +|+|....+.- +...+.-+.
T Consensus 1 M~~~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlV------tREEFd~q~~~-------L~~~r~kl~ 67 (79)
T PF04380_consen 1 MQDPNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLV------TREEFDAQKAV-------LARTREKLE 67 (79)
T ss_pred CCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCC------cHHHHHHHHHH-------HHHHHHHHH
Confidence 44445556666666666565555555556666666666665555533 33443333322 344455555
Q ss_pred HHHHHHHHhhh
Q 021597 199 TLESKLIEIEG 209 (310)
Q Consensus 199 ~Le~Ki~~ie~ 209 (310)
.||.||..+|.
T Consensus 68 ~LEarl~~LE~ 78 (79)
T PF04380_consen 68 ALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHhc
Confidence 66666666654
No 75
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=78.77 E-value=19 Score=30.39 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=39.4
Q ss_pred HHHHHHHhHhhhhhhHH-HHHHHHHHHHHHHHHhhhchh-hhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 147 AQRQLSSKITSVDRDVN-KIVEISQATQEEVTILRGRSK-LIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 147 aKrhLsqRI~~vD~kld-e~~eis~~i~~eV~~v~~dl~-~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
.+.++..+++.+-++-+ ...++-+.+.+.|..+-.++. --..||+.++.-|..||.+|..++.
T Consensus 53 ~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 53 AREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444433322 234566677777766655543 2348999999999999999988764
No 76
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.66 E-value=30 Score=35.62 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=70.3
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLS-------SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLs-------qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
-|+-+-++....-++|..|...|++.|++|. .+.+.++..+.|++..-+++..+...-+..++..+-+=..+.
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~ 237 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLK 237 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4677788888888999999999999998887 567778888888888888888888777777777777777777
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 021597 195 DIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd 212 (310)
+.+..+|.-+.+..++-.
T Consensus 238 ~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 238 NEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777766665544433
No 77
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.36 E-value=21 Score=30.59 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=52.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021597 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ 185 (310)
.+|..+++-+-.+++..|.+.+... .-.+|...++.+..+.+..-++-+.--++|.+++.|+..
T Consensus 44 ~~r~~l~~Eiv~l~~~~e~~~~~~~-~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 44 AERDELREEIVKLMEENEELRALKK-EVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4788888888888888888855444 445899999999999999999999999999888887543
No 78
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=78.34 E-value=45 Score=29.05 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (310)
+++-++.++....++-+.++..=.+....++.....+++..+....+.+.+.++..-+..+..-++.+...
T Consensus 138 la~~t~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~ 208 (262)
T smart00283 138 LAERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAA 208 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444444444444444444444444444443333333333333333
No 79
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.29 E-value=25 Score=37.33 Aligned_cols=65 Identities=14% Similarity=0.260 Sum_probs=34.2
Q ss_pred Cchhhhhhhh--HHHHHHHHHHh---HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021597 116 PDMMFATRRS--LSDACNSVARQ---LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (310)
Q Consensus 116 SDlMfVTKRn--ms~Av~sv~Kq---LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~ 180 (310)
+||+.||-|. |.+-+..+-|. |.+.-..|......|..|++.+...|....+-....+.+..++.
T Consensus 129 ~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~ 198 (546)
T PF07888_consen 129 SDMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELT 198 (546)
T ss_pred cceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888665 33333333333 33334445555555666667766666555444444443333333
No 80
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=78.05 E-value=46 Score=28.98 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=52.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
+++..=-|+|++=...+..-=+.|+.|++.+...+|+..+-....++.+.+.... ....++++.-|..||..++..
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~----~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR----KSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHhHHHHHhhHHHHHHHHHHH
Confidence 4455556667776666666666777777777777776655555555444333222 223346666666676666666
Q ss_pred hhhhhHHhHHHHH
Q 021597 208 EGKQDITTLGVKK 220 (310)
Q Consensus 208 e~kQd~Tn~GV~~ 220 (310)
+.+=.-|+.-+..
T Consensus 93 e~~L~e~~ekl~e 105 (143)
T PF12718_consen 93 EKKLKETTEKLRE 105 (143)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555554443
No 81
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=77.79 E-value=33 Score=33.21 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=26.8
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHH---HHHHHHhHhhhhhhHH
Q 021597 117 DMMFATRRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVN 163 (310)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~a---KrhLsqRI~~vD~kld 163 (310)
+-|--....|.+-.+.+.++++.+.+.+... +..|..+|.++....+
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555666666677777776666554443 3445555555554433
No 82
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=77.37 E-value=33 Score=31.30 Aligned_cols=88 Identities=22% Similarity=0.374 Sum_probs=49.0
Q ss_pred ecccCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHhhhhhhHHHHHHHHHHHHHH-HHHhh-hchhhh
Q 021597 110 WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDVNKIVEISQATQEE-VTILR-GRSKLI 186 (310)
Q Consensus 110 WKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~-~aKrhLsqRI~~vD~klde~~eis~~i~~e-V~~v~-~dl~~i 186 (310)
||+| +.+| .+|++-+||+++.+.-.- -.+.-++.-++.+...+.+...-...+..+ |..++ .+...+
T Consensus 14 w~~~---------~~sl-s~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l 83 (165)
T PF09602_consen 14 WKQW---------SQSL-SLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSL 83 (165)
T ss_pred HHHH---------HHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 3444 468889999988775443 334456666666666666655544444444 54442 233333
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 021597 187 GDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~i 207 (310)
++-+.....-+..|..+|..+
T Consensus 84 ~d~inE~t~k~~El~~~i~el 104 (165)
T PF09602_consen 84 NDSINEWTDKLNELSAKIQEL 104 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455554433
No 83
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.33 E-value=14 Score=30.29 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=27.3
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHH
Q 021597 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (310)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~ 199 (310)
|.+..||++|. +|-+.|+..|++ +=.+.+--|+|++.++.+++-
T Consensus 17 rafIerIERlE---eEk~~i~~dikd----vy~eakg~GFDvKa~r~iirl 60 (85)
T COG3750 17 RAFIERIERLE---EEKKTIADDIKD----VYAEAKGHGFDVKAVRTIIRL 60 (85)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHcCCccHHHHHHHHHH
Confidence 34445555554 445555555554 445555569999999988753
No 84
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=77.32 E-value=1.4 Score=43.69 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=17.6
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHH--HHHHHHHHHhhccCC
Q 021597 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG--VKKLCDRARELENGR 232 (310)
Q Consensus 174 ~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~G--V~~LC~f~~~~~~~~ 232 (310)
.+|+.+..++...+..+..++..|.+++.-|.-+.. +++..| |-.|-+-+..+|.+.
T Consensus 98 ssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLks--dVSt~aL~ItdLe~RV~~LEs~~ 156 (326)
T PF04582_consen 98 SSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKS--DVSTQALNITDLESRVKALESGS 156 (326)
T ss_dssp --------------------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhh--hhhhhcchHhhHHHHHHHHhcCC
Confidence 344444444444444455555555555555554433 223333 344555555555543
No 85
>PRK04863 mukB cell division protein MukB; Provisional
Probab=77.26 E-value=45 Score=39.25 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=40.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHh---------HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 021597 128 DACNSVARQLEDVYSSISAAQRQLSSK---------ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (310)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqR---------I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (310)
+-.+.+.++++.+......+++++... +......+++..+-.+...+++.+.+..+..+..+++.+..-+.
T Consensus 314 diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLe 393 (1486)
T PRK04863 314 RELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVD 393 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777766532 22223333333333333334444444444444444444444444
Q ss_pred HHHHHHHHhhh
Q 021597 199 TLESKLIEIEG 209 (310)
Q Consensus 199 ~Le~Ki~~ie~ 209 (310)
.|..++..++.
T Consensus 394 eLqeqLaelqq 404 (1486)
T PRK04863 394 ELKSQLADYQQ 404 (1486)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 86
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=77.14 E-value=15 Score=36.72 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=19.8
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHH
Q 021597 115 LPDMMFATRRSLSDACNSVARQLEDVY 141 (310)
Q Consensus 115 ~SDlMfVTKRnms~Av~sv~KqLeqVs 141 (310)
+...+-.||.-|..--+.+++.||.+.
T Consensus 232 I~~~~~~~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 232 IESALPETKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888777777654
No 87
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=77.01 E-value=9.2 Score=30.68 Aligned_cols=44 Identities=20% Similarity=0.361 Sum_probs=28.9
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHH
Q 021597 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (310)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~ 199 (310)
|.+-.||++|. +|-++|+..|++--.++++ -|+|+..++++|.-
T Consensus 7 r~~ieRiErLE---eEk~~i~~dikdVyaEAK~----~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 7 RQFIERIERLE---EEKKAISDDIKDVYAEAKG----NGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence 34445555554 5555666666665555555 59999999999864
No 88
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=77.00 E-value=6.2 Score=31.90 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021597 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (310)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (310)
+..|++.|..||+.+..++++..+-.+.+++++..++..++
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777666666666666655544433
No 89
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=76.91 E-value=35 Score=31.76 Aligned_cols=81 Identities=12% Similarity=0.261 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
+....+.++++|......+..+| .+++.++..++....=.+..+++++.+..+...+..+.+..+.-...|+..|.
T Consensus 22 l~~~~e~~~~~L~~~~~~~~~~~----~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~ 97 (264)
T PF06008_consen 22 LLSSIEDLTNQLRSYRSKLNPQK----QQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQ 97 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555443 23444444455555555555555555555555555555555555555555555
Q ss_pred Hhhhh
Q 021597 206 EIEGK 210 (310)
Q Consensus 206 ~ie~k 210 (310)
.+..+
T Consensus 98 ~l~~~ 102 (264)
T PF06008_consen 98 NLQDN 102 (264)
T ss_pred HHHHH
Confidence 55443
No 90
>PRK00846 hypothetical protein; Provisional
Probab=76.86 E-value=18 Score=29.11 Aligned_cols=55 Identities=9% Similarity=0.120 Sum_probs=39.8
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
...+.+||+.|..++--|...++...+.|+.-+.. ++.++..+.-|-.|+..++.
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~-------I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLT-------GARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 45688999999999999888888888888776655 45555555555566666653
No 91
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=76.79 E-value=57 Score=36.90 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=10.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 183 SKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 183 l~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
+..+..++...+.....|+..|..++.+
T Consensus 872 ~~~l~~~l~~~~~~~~~l~~~l~~~~~~ 899 (1163)
T COG1196 872 KEELEDELKELEEEKEELEEELRELESE 899 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 92
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=76.74 E-value=54 Score=37.08 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=22.0
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 021597 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (310)
Q Consensus 171 ~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (310)
..++++..+...+.....+...+..-+..++.++..++..-.....-+.
T Consensus 867 ~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 915 (1163)
T COG1196 867 ELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE 915 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444333333333
No 93
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=76.25 E-value=12 Score=33.05 Aligned_cols=55 Identities=9% Similarity=0.172 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH-HhhhchhhhhhHHHH
Q 021597 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT-ILRGRSKLIGDEFQS 192 (310)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~-~v~~dl~~ig~Dv~~ 192 (310)
+.|.+++..+-+.|..-|+....++.+-.++++.=-+.|. -+|+|++.+...++.
T Consensus 3 ~~l~e~~~~~~~~L~~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 3 ESLEEALEHSEEELQEALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666555555555554444433333332 356677777666665
No 94
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=76.25 E-value=14 Score=35.30 Aligned_cols=55 Identities=9% Similarity=0.242 Sum_probs=32.5
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
+|+.+|.+++......+.+++++..++..++.+..++..++..+..|+..+..++
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e 65 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLE 65 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666655555555555555444
No 95
>PRK09793 methyl-accepting protein IV; Provisional
Probab=76.23 E-value=78 Score=32.21 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.3
Q ss_pred CCCCCC
Q 021597 259 RSGSLH 264 (310)
Q Consensus 259 r~~slp 264 (310)
|+.+.|
T Consensus 520 ~~~~~~ 525 (533)
T PRK09793 520 RHESAQ 525 (533)
T ss_pred hhhccc
Confidence 333333
No 96
>PRK09793 methyl-accepting protein IV; Provisional
Probab=76.19 E-value=78 Score=32.18 Aligned_cols=30 Identities=7% Similarity=0.068 Sum_probs=11.4
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (310)
++..-++.+....++|.+-.+++.+.+.++
T Consensus 279 eia~~~~~ls~~~e~qa~~~~~~~~s~~~~ 308 (533)
T PRK09793 279 EIVAGNNDLSSRTEQQAASLAQTAASMEQL 308 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444433333333333333
No 97
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=76.03 E-value=28 Score=34.91 Aligned_cols=100 Identities=17% Similarity=0.338 Sum_probs=69.7
Q ss_pred cccCc-CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 021597 111 KGWKL-PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (310)
Q Consensus 111 KGws~-SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~D 189 (310)
|-|.+ -|=|---|+|...++..++-+|+.++..+..+=..+..|=-.+...|.-...--+...++..++|..-.+...+
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g 302 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44544 36788899999999999999999999999888888888877777776665554555556666666666665555
Q ss_pred HHH----HHHHHHHHHHHHHHhhhh
Q 021597 190 FQS----VRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 190 v~~----v~~~V~~Le~Ki~~ie~k 210 (310)
|.+ +.+++..+|-+=.+||.+
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEEQ 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 543 444455555555555543
No 98
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.83 E-value=30 Score=27.02 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
.|.+.+.-|..|++.++.|+.......+.+..|=..+-.-+..-..++..++.-+..|...+++..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788889999999999999999888888888766666667777777888877777777766543
No 99
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=75.03 E-value=12 Score=28.58 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=16.3
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHH
Q 021597 121 ATRRSLSDACNSVARQLEDVYSSISA 146 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~ 146 (310)
-||+.+.+.+..+..++++.++.+..
T Consensus 26 e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 26 ETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777776666655554443
No 100
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.52 E-value=75 Score=30.79 Aligned_cols=55 Identities=13% Similarity=0.287 Sum_probs=22.3
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHH----HHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 021597 148 QRQLSSKITSVDRDVNKIVEISQATQ----EEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~----~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (310)
+-.|..|-+.|..++...++....+. +++..+|..|.....++...+.-+..|+.
T Consensus 179 ~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~ 237 (325)
T PF08317_consen 179 LPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQE 237 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333222 33444444444444444433333333333
No 101
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=74.36 E-value=15 Score=29.44 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021597 190 FQSVRDIVQTLESKLIE 206 (310)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ 206 (310)
++.+-..+..|+.|+..
T Consensus 44 lDa~~~~l~~l~~~V~~ 60 (75)
T PF05531_consen 44 LDAQSAQLTTLNTKVNE 60 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 102
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=73.89 E-value=53 Score=32.37 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=16.7
Q ss_pred HHhHHHHHHHHHHH-HHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 021597 134 ARQLEDVYSSISAA-QRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (310)
Q Consensus 134 ~KqLeqVs~sL~~a-KrhLsqRI~~vD~klde~~eis~~i~~eV~ 177 (310)
+..||+|.+.+... --.|...|..+..+|++|+...+..+++|.
T Consensus 54 A~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~ 98 (301)
T PF06120_consen 54 ADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKID 98 (301)
T ss_pred HHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443321 123333333333333333333333333333
No 103
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=73.56 E-value=43 Score=38.10 Aligned_cols=94 Identities=20% Similarity=0.356 Sum_probs=65.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
....-++|.++...+..+...+.+++..+..++++..+-.+...++..+.+.+ +..+...++.-+..++.+|+.++.
T Consensus 258 l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~---~~~~~~~~~~~l~~~~~~L~~i~~ 334 (1201)
T PF12128_consen 258 LQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDE---LNKELSALNADLARIKSELDEIEQ 334 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777888888888888888888888777666666665555443 455666666667777788888876
Q ss_pred h-hhHHhHHHHHHHHHHH
Q 021597 210 K-QDITTLGVKKLCDRAR 226 (310)
Q Consensus 210 k-Qd~Tn~GV~~LC~f~~ 226 (310)
+ ..|-..+|..+++-+.
T Consensus 335 ~~~~ye~~~i~~~~~~~~ 352 (1201)
T PF12128_consen 335 QKKDYEDADIEQLIARVD 352 (1201)
T ss_pred HHHHHHHCCHHHHHHHHH
Confidence 5 5666677777766444
No 104
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=73.33 E-value=8.9 Score=32.35 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=21.5
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021597 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (310)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (310)
..|++.|..||+.++..+++..+....+++++..++..
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 130 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQE 130 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666655555555555444433
No 105
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=73.21 E-value=29 Score=35.60 Aligned_cols=88 Identities=15% Similarity=0.271 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH------------HhhhchhhhhhHHHHHHHHHH--------HH
Q 021597 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRGRSKLIGDEFQSVRDIVQ--------TL 200 (310)
Q Consensus 141 s~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~------------~v~~dl~~ig~Dv~~v~~~V~--------~L 200 (310)
..-+..-|++|..+-++|-.++|+.+.+.+.++++|. .+..+++....|++.++.-+. .|
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3456677888888888888888888888888887764 334444444444444444432 45
Q ss_pred HHHHHHhhhhhhHHhHHHHHHHHHHHhh
Q 021597 201 ESKLIEIEGKQDITTLGVKKLCDRAREL 228 (310)
Q Consensus 201 e~Ki~~ie~kQd~Tn~GV~~LC~f~~~~ 228 (310)
|.-|+.|..-|+|=+.=-.++-+.-+.+
T Consensus 281 E~EL~~V~eEQqfL~~QedL~~DL~eDl 308 (424)
T PF03915_consen 281 ESELQKVCEEQQFLKLQEDLLSDLKEDL 308 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777887777655444443333
No 106
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=73.15 E-value=65 Score=28.32 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=16.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 021597 183 SKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 183 l~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (310)
...+...++..++.+...-.||...+.++.
T Consensus 140 ~~~~~~~~~~~~~~l~~~lekL~~fd~~~~ 169 (204)
T PF04740_consen 140 SSSFIDSLEKAKKKLQETLEKLRAFDQQSS 169 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455555555555555555556666655443
No 107
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=73.01 E-value=41 Score=36.99 Aligned_cols=50 Identities=6% Similarity=0.036 Sum_probs=31.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhccC
Q 021597 182 RSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENG 231 (310)
Q Consensus 182 dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~~ 231 (310)
.+.+-..++..+.+.+..+..++.++.....-...+...|-+|...+.+.
T Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (910)
T TIGR00833 601 DVASALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDYSMTMGKL 650 (910)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455566666777777777777766555556666666666665543
No 108
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=72.75 E-value=19 Score=29.03 Aligned_cols=61 Identities=16% Similarity=0.296 Sum_probs=27.2
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
...+|.+..+++.+-.+ .++++++|..--.. ..+.+.+..++..+..-+..||.++..++.
T Consensus 35 d~~~r~l~~~~e~lr~~---rN~~sk~I~~~~~~-~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 35 DQERRELQQELEELRAE---RNELSKEIGKLKKA-GEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHCHT-TCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544 34444444432111 133444444444444444444444444443
No 109
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=72.74 E-value=37 Score=25.97 Aligned_cols=62 Identities=11% Similarity=0.296 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
|....+.|.+.|+..+..|.+. ...=-.+.-.+-+.+..+..++..++..+..|...+..+.
T Consensus 24 i~~~~~~L~~~i~~~~~eLr~~---V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 24 IRQLENKLRQEIEEKDEELRKL---VYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445555555555544433 2222234455555566666666677766666666666654
No 110
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=72.54 E-value=1e+02 Score=31.70 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhH
Q 021597 126 LSDACNSVARQL 137 (310)
Q Consensus 126 ms~Av~sv~KqL 137 (310)
|.++++.+-..|
T Consensus 252 La~s~n~m~~~L 263 (554)
T PRK15041 252 LAESLRHMQGEL 263 (554)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 111
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=72.39 E-value=18 Score=33.00 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
||+..|+.+-.+|.+.+|.....|++. ++++.+++ ..++.+....+.++.-+.-|+..|+..+.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~e---I~~L~~~i----~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDE---IKQLEKEI----QRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777666555544432 22223332 22355556667777777777777776653
No 112
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=71.79 E-value=78 Score=29.40 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 021597 61 LLAEVSSV 68 (310)
Q Consensus 61 L~aQV~~L 68 (310)
|++++..+
T Consensus 135 ll~~~~~l 142 (291)
T TIGR00996 135 LLGSLTRL 142 (291)
T ss_pred HHHHHHHH
Confidence 44444443
No 113
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=71.40 E-value=49 Score=34.12 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=53.4
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 021597 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (310)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (310)
..++..+-.++.+|.++-+.+++-+..-+.||+.+..||.++|+--..|..|+..-......
T Consensus 13 ~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~ 74 (508)
T PF04129_consen 13 SENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEK 74 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 36788899999999999999999999999999999999999999988888888755544433
No 114
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=71.14 E-value=20 Score=37.30 Aligned_cols=61 Identities=11% Similarity=0.279 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 021597 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (310)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (310)
..+|+.|..-=+++..+++.++.++.+..+..+.++++-..+|..+.++..++..+++.|+
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888889999999999999999999999988999998888888888776654
No 115
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=70.86 E-value=41 Score=33.73 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHH
Q 021597 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ 170 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~ 170 (310)
.++.-.+.+.+.+..+.++|..++.++.......+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 162 KSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555555555555555555555444444
No 116
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=70.83 E-value=10 Score=35.13 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=24.9
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 021597 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
.-+|+-++...|+++..|+++++.-...|+.+++
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466777888888888888888866666666655
No 117
>PRK13694 hypothetical protein; Provisional
Probab=70.82 E-value=22 Score=29.16 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=32.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHH
Q 021597 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (310)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~ 199 (310)
|..+|.+=|+++..==+|-++|+..|++--.++++. |+|+..++++|.-
T Consensus 10 a~~~Lr~fIERIERLEeEkk~i~~dikdVyaEAK~~----GfD~K~~r~ii~l 58 (83)
T PRK13694 10 AKEQLRAFIERIERLEEEKKTISDDIKDVYAEAKGN----GFDVKALKTIIRL 58 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHH
Confidence 444444444443333356677777777777777665 9999999998853
No 118
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=70.69 E-value=36 Score=41.06 Aligned_cols=81 Identities=10% Similarity=0.167 Sum_probs=66.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
.++.-+-..+.+..+.+..+||.|.+|++.....++....-.....+--..++.+++....|++.++..+..||.|+...
T Consensus 1361 ~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f 1440 (1930)
T KOG0161|consen 1361 QWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRF 1440 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555566888899999999999999999998888888878888889999999999999999999999998866
Q ss_pred h
Q 021597 208 E 208 (310)
Q Consensus 208 e 208 (310)
+
T Consensus 1441 ~ 1441 (1930)
T KOG0161|consen 1441 E 1441 (1930)
T ss_pred H
Confidence 5
No 119
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=70.60 E-value=14 Score=30.59 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=12.0
Q ss_pred HHHHhhhheeeEEecccCcC
Q 021597 97 IVVIVAVGYGYVWWKGWKLP 116 (310)
Q Consensus 97 ~a~iGavGYgYmwWKGws~S 116 (310)
++++.+.-+||+||-.+.++
T Consensus 9 l~~lvl~L~~~l~~qs~~i~ 28 (110)
T PF10828_consen 9 LAVLVLGLGGWLWYQSQRID 28 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444556777888766443
No 120
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=70.54 E-value=72 Score=30.90 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=34.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021597 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (310)
Q Consensus 134 ~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~ 180 (310)
.++|++.-+.|.+++.....++..|...+++..+-.+.+++||.-++
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777777777777777777776554
No 121
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=70.43 E-value=79 Score=28.14 Aligned_cols=80 Identities=13% Similarity=0.335 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH--------HHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV--------EISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~--------eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V 197 (310)
|++..+.+-.|.-++...|+..+.-+..|+..++.++.... +.....-+.+..++ +.++.|+..++..+
T Consensus 18 LtnvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq---~~~rneLtnlnsil 94 (140)
T PF04513_consen 18 LTNVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQ---DTLRNELTNLNSIL 94 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 44555556555555555555555555555555554444311 12333334443333 34445566666666
Q ss_pred HHHHHHHHHhh
Q 021597 198 QTLESKLIEIE 208 (310)
Q Consensus 198 ~~Le~Ki~~ie 208 (310)
..|-..+--|.
T Consensus 95 ~nL~ssvTNin 105 (140)
T PF04513_consen 95 NNLTSSVTNIN 105 (140)
T ss_pred HHHHHHHhhHH
Confidence 66655555544
No 122
>PRK02119 hypothetical protein; Provisional
Probab=70.28 E-value=20 Score=28.08 Aligned_cols=38 Identities=5% Similarity=0.055 Sum_probs=27.7
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig 187 (310)
.+..||+.|..|+--|........+.|++-+..+....
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~ 43 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQ 43 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888888777777766666543333
No 123
>PRK10698 phage shock protein PspA; Provisional
Probab=69.96 E-value=49 Score=30.70 Aligned_cols=80 Identities=10% Similarity=0.187 Sum_probs=49.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH---------HHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 021597 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT---------QEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (310)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i---------~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (310)
|+.-...|+.-++....+-.+|..++..|..|+.+.+.=...+ +.+|.++-. +.|..+--..+..+
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~-----~~~~~~a~~~f~rm 171 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD-----SGKLDEAMARFESF 171 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCcchHHHHHHHH
Confidence 5555556666666666666677777777777777664432222 222322222 24445556677889
Q ss_pred HHHHHHhhhhhhHH
Q 021597 201 ESKLIEIEGKQDIT 214 (310)
Q Consensus 201 e~Ki~~ie~kQd~T 214 (310)
|.||+++|..-+..
T Consensus 172 E~ki~~~Ea~aea~ 185 (222)
T PRK10698 172 ERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHhHh
Confidence 99999999887764
No 124
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=69.73 E-value=30 Score=41.42 Aligned_cols=23 Identities=9% Similarity=0.320 Sum_probs=11.8
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhh
Q 021597 135 RQLEDVYSSISAAQRQLSSKITS 157 (310)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~ 157 (310)
.+++++...|+.+|+||....++
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~ 827 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSD 827 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544443
No 125
>PRK02224 chromosome segregation protein; Provisional
Probab=69.54 E-value=47 Score=35.67 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=15.1
Q ss_pred hHHHHHHHHHH-------HHHHHHHhHhhhhhhHHH
Q 021597 136 QLEDVYSSISA-------AQRQLSSKITSVDRDVNK 164 (310)
Q Consensus 136 qLeqVs~sL~~-------aKrhLsqRI~~vD~klde 164 (310)
.++++++.+.. .++.+..+++.+...|++
T Consensus 163 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (880)
T PRK02224 163 KLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE 198 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554444444 455555555555555544
No 126
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=69.14 E-value=30 Score=26.23 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=35.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021597 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (310)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (310)
...++++.+.|+++...-...|+ +.|..+...|++..++.+++.-||..+
T Consensus 2 ~~l~~~i~~~l~~~~~~~~~~r~---~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLSGEQRK---SLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHGGGS-CHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHhhccChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35567777777777754444444 446667778999999999999888666
No 127
>PRK02224 chromosome segregation protein; Provisional
Probab=69.13 E-value=1.3e+02 Score=32.53 Aligned_cols=6 Identities=33% Similarity=0.656 Sum_probs=2.6
Q ss_pred eeeeEc
Q 021597 8 LTFLVG 13 (310)
Q Consensus 8 v~ILvG 13 (310)
+++|+|
T Consensus 25 ~~~i~G 30 (880)
T PRK02224 25 VTVIHG 30 (880)
T ss_pred eEEEEC
Confidence 444444
No 128
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.09 E-value=64 Score=33.74 Aligned_cols=121 Identities=14% Similarity=0.299 Sum_probs=75.3
Q ss_pred hheeeEEecccCcCchhhhhh-hhH-------------------HHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhhh
Q 021597 103 VGYGYVWWKGWKLPDMMFATR-RSL-------------------SDACNSVARQLEDVYSSIS---AAQRQLSSKITSVD 159 (310)
Q Consensus 103 vGYgYmwWKGws~SDlMfVTK-Rnm-------------------s~Av~sv~KqLeqVs~sL~---~aKrhLsqRI~~vD 159 (310)
-||-.|-=+|..|+++=+-.+ ..+ ......+...++++|+.|. .||+...+.++.+.
T Consensus 233 ~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~ 312 (560)
T PF06160_consen 233 EGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELY 312 (560)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 488889999999988543322 111 2234445566677777665 47777777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhch-----------------hhhhhHHHH--------------HHHHHHHHHHHHHHhh
Q 021597 160 RDVNKIVEISQATQEEVTILRGRS-----------------KLIGDEFQS--------------VRDIVQTLESKLIEIE 208 (310)
Q Consensus 160 ~klde~~eis~~i~~eV~~v~~dl-----------------~~ig~Dv~~--------------v~~~V~~Le~Ki~~ie 208 (310)
+.+++..+-.+.+..|+..++..- +.+...++. +...+..+...|..|+
T Consensus 313 ~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie 392 (560)
T PF06160_consen 313 EYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIE 392 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776665554322 222222221 2233455556666777
Q ss_pred hhhhHHhHHHHHHHH
Q 021597 209 GKQDITTLGVKKLCD 223 (310)
Q Consensus 209 ~kQd~Tn~GV~~LC~ 223 (310)
..|.--+..+..|+.
T Consensus 393 ~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 393 EEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888874
No 129
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.07 E-value=1.1e+02 Score=30.10 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHH---HHHHHHhHhhhhhhHHHH----HHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 122 TRRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVNKI----VEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~a---KrhLsqRI~~vD~klde~----~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
..-.|.+--+.+.++++.+.+.+... +..|...+..+..-.+++ .+.-+.+++++.+...+++....++..++
T Consensus 152 ~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~ 231 (312)
T smart00787 152 NLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELE 231 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666655544333 333444444443333332 11223334444444444444444444444
Q ss_pred HHHHHHHHHHHHhh
Q 021597 195 DIVQTLESKLIEIE 208 (310)
Q Consensus 195 ~~V~~Le~Ki~~ie 208 (310)
.-+..++.+|....
T Consensus 232 ~~l~~l~~~I~~~~ 245 (312)
T smart00787 232 EELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 130
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=69.07 E-value=61 Score=26.36 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhh
Q 021597 161 DVNKIVEISQATQEEVTILRGRSKLI 186 (310)
Q Consensus 161 klde~~eis~~i~~eV~~v~~dl~~i 186 (310)
|-.++..++..+...+..+...-..+
T Consensus 36 kY~~~~~~~~~l~~~~~~l~~k~~~l 61 (99)
T PF10046_consen 36 KYKKMKDIAAGLEKNLEDLNQKYEEL 61 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333
No 131
>PRK02793 phi X174 lysis protein; Provisional
Probab=69.02 E-value=20 Score=28.04 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=35.7
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
.+.+||..|..++--|........+.|++-+..+ +.++.-+.-|-.|+.+++
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I-------~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEM-------AKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhc
Confidence 4778999999998888888888888887766664 444444444445555544
No 132
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=68.92 E-value=46 Score=32.54 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=17.1
Q ss_pred CCCCC-CCCCCCCCCCCCC-------CCCCcchh
Q 021597 262 SLHPL-PLEPPSPSXXXXX-------XXIPMDLI 287 (310)
Q Consensus 262 slpp~-~~e~~sps~~~~~-------~~~~~~~~ 287 (310)
+|||- |.-|..+--+=|+ +.+|||++
T Consensus 165 ~LP~yqa~HPt~rCRtYGti~fnG~~l~iPMDi~ 198 (271)
T PF05549_consen 165 DLPPYQAVHPTARCRTYGTIEFNGSSLRIPMDIR 198 (271)
T ss_pred CCCcccccCCCcccccceeEEECCEeeecccccc
Confidence 37776 5555555555555 89999975
No 133
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=68.59 E-value=22 Score=30.28 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=30.6
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021597 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (310)
Q Consensus 118 lMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (310)
+|..|+++..+. .++...|..+|.+|.+-=+.|.+..++..++-..+.++-
T Consensus 16 ~~r~~~~~~~~q--------~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y 66 (128)
T PF06295_consen 16 IGRLTSSNQQKQ--------AKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDY 66 (128)
T ss_pred HHHHhccchhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555332 344455556666666666667777777777766665554
No 134
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=68.58 E-value=84 Score=29.54 Aligned_cols=89 Identities=11% Similarity=0.213 Sum_probs=61.5
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 021597 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (310)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (310)
++|=....++.+ .+..++.|..+.++.++++ +-++.++.+...|+..+.+=+.--++.+.--....+|..|-+++|+=
T Consensus 103 ~l~esl~~~i~~-~~~aa~~i~~~~~~~~~~~-~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ 180 (202)
T TIGR03513 103 TLMQSLGNGINN-FEGAAKTLAPMTDSYAQQK-KYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEE 180 (202)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 6677788888999888888 67888999999888887775554454444444555667777777777
Q ss_pred HHHHHHHHHHh
Q 021597 197 VQTLESKLIEI 207 (310)
Q Consensus 197 V~~Le~Ki~~i 207 (310)
++.|-..|.++
T Consensus 181 ~~kLa~NL~sL 191 (202)
T TIGR03513 181 MEKMAANLTSL 191 (202)
T ss_pred HHHHHHHHHHH
Confidence 77777776665
No 135
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.55 E-value=60 Score=26.29 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=45.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 021597 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (310)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (310)
++.|..|+.+..+.+...+=||.+++++=..+..++++.++..+.|+..=..+...|..-..-+..|
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777777777777777776666655554444444444
No 136
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.19 E-value=96 Score=35.59 Aligned_cols=79 Identities=11% Similarity=0.194 Sum_probs=45.7
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 021597 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (310)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V 197 (310)
-..-|.++......+...+++.-+.+...+.++.-==..++....+..++...-+.+...++..+..+..+++.+..+.
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM 957 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777777777777777776666554333334444444444445555555555555555555555555443
No 137
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=68.19 E-value=44 Score=34.93 Aligned_cols=91 Identities=13% Similarity=0.200 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 021597 136 QLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 136 qLeqVs~sL~~aKr---hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (310)
.|=..-++|..-|. .++|-|++|..+-+-..|--+.-+.|-.++.+--++...-...|-+.|+.-|-|-..+.-+-.
T Consensus 119 GLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~ 198 (558)
T PF15358_consen 119 GLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSA 198 (558)
T ss_pred cceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchH
Confidence 33333344444443 356677777777666666666777888888888888888889999999999999888887777
Q ss_pred HHhHHHHHHHHHHH
Q 021597 213 ITTLGVKKLCDRAR 226 (310)
Q Consensus 213 ~Tn~GV~~LC~f~~ 226 (310)
+--+-+.||-+.++
T Consensus 199 ~LEekLr~lq~qLq 212 (558)
T PF15358_consen 199 LLEEKLRYLQQQLQ 212 (558)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888999987765
No 138
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=67.93 E-value=54 Score=37.50 Aligned_cols=60 Identities=12% Similarity=0.300 Sum_probs=34.5
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHH-HHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 149 RQLSSKITSVDRDVNKIVEISQATQEEV-TILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV-~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
+|.-.+|+..-+..|.+...+..++++. ..+..+++++..+++.+..-|..||.-+.++.
T Consensus 361 ~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~ 421 (1074)
T KOG0250|consen 361 REIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLR 421 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666666666666555 55555555555555555555555555444444
No 139
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=67.84 E-value=13 Score=32.63 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=9.0
Q ss_pred HHHhhhheeeEEecc
Q 021597 98 VVIVAVGYGYVWWKG 112 (310)
Q Consensus 98 a~iGavGYgYmwWKG 112 (310)
++++++|-+|+||..
T Consensus 7 ~~~a~~~~~~~~~~~ 21 (135)
T TIGR03495 7 LGLLVAGLGWQSQRL 21 (135)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445557777775
No 140
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.54 E-value=85 Score=33.11 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=15.0
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 174 ~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
+++.+++.++..+..+++.++.-+..++.++.++
T Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 435 NELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443
No 141
>PRK00295 hypothetical protein; Provisional
Probab=67.43 E-value=26 Score=27.05 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=27.4
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~D 189 (310)
+..||..|..|+--|....+...+.|+.-+..+......
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~q 41 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQ 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888888888888888877777776666664443333
No 142
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=67.03 E-value=76 Score=29.84 Aligned_cols=90 Identities=19% Similarity=0.302 Sum_probs=62.1
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH---HHHhHhhhhhhHHHHHHHHHH--HHHHHHHhhhchhhhhhHHHHHH
Q 021597 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQA--TQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKrh---LsqRI~~vD~klde~~eis~~--i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
---+.++.+.+...-++++++.+.+..-|+. |.++|..+..+++..++.... .+..|...-+..+. .+.+..+.
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~-~sa~~~fe 169 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS-SSAMAAFE 169 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhHHHHH
Confidence 3456788999999999998888888877764 457888888887776654443 34667777777666 45554444
Q ss_pred HHHHHHHHHHHHhhhhhhHH
Q 021597 195 DIVQTLESKLIEIEGKQDIT 214 (310)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd~T 214 (310)
-+|.|+.++|..=+..
T Consensus 170 ----r~e~kiee~ea~a~~~ 185 (225)
T COG1842 170 ----RMEEKIEEREARAEAA 185 (225)
T ss_pred ----HHHHHHHHHHHHHHHh
Confidence 5567777777664443
No 143
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=66.68 E-value=26 Score=28.70 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=37.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021597 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (310)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~ 181 (310)
++.|-.+|+++..+| .||-+|-++|-.+|.+..+-.++|+.+..+-..
T Consensus 28 ~~~ins~LD~Lns~L----D~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 28 YAAINSMLDQLNSCL----DHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777887766555 689999999999999999999999888755433
No 144
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=66.42 E-value=1.2e+02 Score=28.87 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhcC
Q 021597 61 LLAEVSSVQQELSHV 75 (310)
Q Consensus 61 L~aQV~~LaqElr~L 75 (310)
+.+|+.+|..++..|
T Consensus 86 l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 86 LESQVLRLEAEVARL 100 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777665
No 145
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=66.28 E-value=34 Score=33.88 Aligned_cols=55 Identities=9% Similarity=0.297 Sum_probs=26.8
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
++.++|.+++..+.++..-.+.-++-++.+... +..-++.|+.-|..||.||..+
T Consensus 333 ~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 333 EFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 344445555544444444444434434444433 4445555555566666665543
No 146
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=66.27 E-value=1.2e+02 Score=31.58 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 021597 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 169 s~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
.+.++.|+.+++.+|..+..|+..++..|..|...|...-...
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el 325 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEEL 325 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777888888888888888888877776554433
No 147
>PRK10698 phage shock protein PspA; Provisional
Probab=66.26 E-value=1.1e+02 Score=28.41 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=28.1
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 021597 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (310)
..+.+..++..+.....-++.++.-+..|+.||.+...+++
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666777777777777777777777665
No 148
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=66.06 E-value=40 Score=26.86 Aligned_cols=45 Identities=11% Similarity=0.263 Sum_probs=40.7
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 021597 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (310)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ 166 (310)
--+||.+-..-|-+-|.|+.+...-.-.++..|||.+...+|+..
T Consensus 10 DpkNmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLE 54 (73)
T KOG4117|consen 10 DPKNMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLE 54 (73)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 347999999999999999999999999999999999999988764
No 149
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=65.99 E-value=1e+02 Score=33.59 Aligned_cols=91 Identities=12% Similarity=0.200 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHH---HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-----------hhhh
Q 021597 123 RRSLSDACNSVARQLEDVYSS---ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-----------LIGD 188 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~s---L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~-----------~ig~ 188 (310)
|.-+..-++.+..+.++--+. +..-|+.|+.+=+++.+|+++..+-++.+.+-+..+...+. ++..
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~ 639 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKK 639 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 333444444444444433222 33456677777788888888877777777766665543332 3455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhH
Q 021597 189 EFQSVRDIVQTLESKLIEIEGKQDI 213 (310)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (310)
|++.++.-++.|...|+.+..+.++
T Consensus 640 EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 640 ELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677777777766555554
No 150
>PRK04325 hypothetical protein; Provisional
Probab=65.92 E-value=28 Score=27.33 Aligned_cols=52 Identities=8% Similarity=0.148 Sum_probs=34.9
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
.+..||..|..|+--|...++...+.|++-+..+ +.++.-+.-|-.|+.+++
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I-------~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTL-------DLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 4778888888888888888888877777666654 444444444445555543
No 151
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=65.84 E-value=77 Score=26.33 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=17.4
Q ss_pred HHHHhHhhhhhhHHHHH-HHHHHHHHHHHHhhhchhhhhhH
Q 021597 150 QLSSKITSVDRDVNKIV-EISQATQEEVTILRGRSKLIGDE 189 (310)
Q Consensus 150 hLsqRI~~vD~klde~~-eis~~i~~eV~~v~~dl~~ig~D 189 (310)
.|..|++.+..+++... ++...++..+..+...+....++
T Consensus 86 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (202)
T PF01442_consen 86 SLSERAEELKERLEARAEELESRLEEEVDELEESLESRSEE 126 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444444444432 24444444444444444443333
No 152
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=65.67 E-value=7.6 Score=32.63 Aligned_cols=48 Identities=6% Similarity=0.268 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT 172 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i 172 (310)
++.+++..+..-|.++.+.+.+++..+..+.+.+.+++++.+++....
T Consensus 66 g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k 113 (133)
T PF06148_consen 66 GMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEK 113 (133)
T ss_dssp --------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999988887665443
No 153
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=65.47 E-value=1.6e+02 Score=29.86 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=28.8
Q ss_pred hhhhhhhhHHHHHHHH-HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 021597 118 MMFATRRSLSDACNSV-ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (310)
Q Consensus 118 lMfVTKRnms~Av~sv-~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ 166 (310)
||+=-|.|.=|-...+ -++|.. |...+|.|..|=..-|.+..++-
T Consensus 126 l~~~vkq~FldpL~~l~~~elK~----i~hh~KKLEgRRldyD~kkkk~~ 171 (366)
T KOG1118|consen 126 LDDNVKQNFLDPLQNLQLKELKD----IQHHRKKLEGRRLDYDYKKKKQG 171 (366)
T ss_pred HHHHHHHHHhHHHHHhhHHHHHH----HHHHHHHhhhhhhHHHHHHHHhc
Confidence 5666677766666655 455543 45567778777777777666553
No 154
>PRK03918 chromosome segregation protein; Provisional
Probab=65.22 E-value=49 Score=35.32 Aligned_cols=62 Identities=13% Similarity=0.333 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH---HHHHHhhhchhhhhhHHHHHHHHH
Q 021597 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ---EEVTILRGRSKLIGDEFQSVRDIV 197 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~---~eV~~v~~dl~~ig~Dv~~v~~~V 197 (310)
.++..++.+...++.+..+|+.+...+.+..++.+.+. .++.++...++.+...+..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~ 223 (880)
T PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888889999998888888866655544332 334444444444444444443333
No 155
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=65.18 E-value=39 Score=23.39 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=22.8
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 021597 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (310)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~ 195 (310)
+.|+.+...+-++..+...|..+|.+=..-+.+|...++..+.
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~ 48 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADV 48 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666665544444444444444443
No 156
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=65.09 E-value=18 Score=29.33 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhcC
Q 021597 61 LLAEVSSVQQELSHV 75 (310)
Q Consensus 61 L~aQV~~LaqElr~L 75 (310)
|+.|.+.|..+++++
T Consensus 18 l~~~~~~l~~~~~E~ 32 (105)
T cd00632 18 YIVQRQKVEAQLNEN 32 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666666666555
No 157
>PRK00736 hypothetical protein; Provisional
Probab=65.01 E-value=28 Score=26.90 Aligned_cols=50 Identities=8% Similarity=0.217 Sum_probs=33.1
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
+..||+.|..|+--|....+...+.|+.-+..+ +.++.-+..|-.|+.++
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i-------~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTV-------EQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 457888888888888888888777776666554 44444444444555543
No 158
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.68 E-value=60 Score=31.68 Aligned_cols=71 Identities=10% Similarity=0.149 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
.+--..|...+.+|.+.|..+..+.++..+--...-.+.+..+..+.++.++.+++..-..-...+|++++
T Consensus 63 ~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 63 LQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556667777777777777777777777777788888888888888888888888888888888766
No 159
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=64.66 E-value=94 Score=33.25 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (310)
.-|...|.+-...|.++..--...|+-|...+.++..+.+....=++.-.++|..+|..+..+-.|++.=.+....|...
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588888889999999999999999999999999988887776677777889999999999999999989999999888
Q ss_pred HHHhhhhhhHH
Q 021597 204 LIEIEGKQDIT 214 (310)
Q Consensus 204 i~~ie~kQd~T 214 (310)
+.++...-+++
T Consensus 477 ~e~~~k~~~Rs 487 (594)
T PF05667_consen 477 LEKLPKDVNRS 487 (594)
T ss_pred HHhCCCCCCHH
Confidence 88887664433
No 160
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.38 E-value=26 Score=32.99 Aligned_cols=67 Identities=24% Similarity=0.379 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH--HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE--VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~e--V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
+.+..++....|.+++-+..+...+- +.|-+| +.-=+..+..+-+|++.+++-|.-||.||+++|.|
T Consensus 133 ~~~~~~l~~~~~~l~~~~~~~q~~~A------e~iTEE~r~~v~~~ela~f~~evd~lr~~~~rL~~RL~rLe~k 201 (204)
T COG3165 133 QSVVRALRSGSRFLKHGLKQLQRNLA------EAITEEWRMAVGPLELADFAEEVDALRDAVERLEARLERLERK 201 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHhcchhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666554433333 333333 22234567889999999999999999999999976
No 161
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=64.37 E-value=1.2e+02 Score=28.02 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=16.3
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~ 192 (310)
++..||..|..+|.+..-=...-...|..+...+..+..++..
T Consensus 173 ~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 173 EYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333333333333333333333333
No 162
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=64.35 E-value=22 Score=29.10 Aligned_cols=58 Identities=19% Similarity=0.412 Sum_probs=35.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH----HHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS----QATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis----~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
+|++++|.+.+.|+..++ |++.|+.+|... +++ +.+.+|.+.+...++.-..++..+|
T Consensus 2 ~V~~eId~lEekl~~cr~----~le~ve~rL~~~-eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRR----RLEAVESRLRRR-ELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred cHHHHHhhHHHHHHHHHH----HHHHHHHHHccc-CCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 588999999999988876 567888887543 232 2333444444444444444444443
No 163
>PRK04098 sec-independent translocase; Provisional
Probab=63.92 E-value=24 Score=31.95 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~ 181 (310)
.-|-.+...+++-+..+-..+..+|.++.+-|. +++--++.....+.+.+.+..+|.
T Consensus 23 ~KLP~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~-~~elk~e~~k~k~~l~~~~~~l~~ 79 (158)
T PRK04098 23 DKLPQAMVDIAKFFKAVKKTINDAKSTLDKEIN-IEEIKEEALKYKKEFESAVESLKK 79 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777788888888888888888888887653 222222223334445555555554
No 164
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=63.87 E-value=73 Score=25.33 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH
Q 021597 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (310)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (310)
.+|-++|..+++.|.+-+++-...++...+=++.+++ ++.....+++-+..=+.++..|+
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~----~~~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRS----TNDEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999988888776666555444432 22223344555555555555554
No 165
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.58 E-value=43 Score=32.58 Aligned_cols=55 Identities=11% Similarity=0.256 Sum_probs=25.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
|++=|.++.+..+-.+.+++||..+...++.+...+++.+.-+..++.+|..++.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~ 87 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQK 87 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555554444444444444444444444444444433333
No 166
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.56 E-value=31 Score=27.64 Aligned_cols=39 Identities=5% Similarity=0.040 Sum_probs=30.2
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021597 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (310)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i 186 (310)
...|-+||..|.+++--|....+.+.+.|++-+-.+++.
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~ 41 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKL 41 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999888888888887766654333
No 167
>PRK09110 flagellar motor protein MotA; Validated
Probab=63.46 E-value=55 Score=31.72 Aligned_cols=93 Identities=15% Similarity=0.179 Sum_probs=70.4
Q ss_pred hHHHHHHhhhheeeEEecc-----cCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---HhhhhhhHHHH
Q 021597 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKI 165 (310)
Q Consensus 94 y~l~a~iGavGYgYmwWKG-----ws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqR---I~~vD~klde~ 165 (310)
.++++++|++.+||++=.| |.++-+|-|-=-.+ ++.-++--+..+-.++...|+-+..+ -+...+-++..
T Consensus 5 iGli~~~~~i~~g~~l~gg~~~~l~~~~~~lIV~Ggtl--ga~lv~~p~~~i~~~~k~~~~~f~~~~~~~~~~~~li~~l 82 (283)
T PRK09110 5 IGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAAL--GAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLALL 82 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHhhchhHHHHHHHhHH--HHHHHcCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Confidence 4567788899999998666 77888888876544 44557778899999999999988744 66677888888
Q ss_pred HHHHHHHHHH-HHHhhhchhhhhh
Q 021597 166 VEISQATQEE-VTILRGRSKLIGD 188 (310)
Q Consensus 166 ~eis~~i~~e-V~~v~~dl~~ig~ 188 (310)
.+++...|++ +-.+..+++++.+
T Consensus 83 ~~l~~~aRk~GllaLE~~v~~~~~ 106 (283)
T PRK09110 83 YELLRKARQEGMMALEAHIENPEE 106 (283)
T ss_pred HHHHHHHHhcCHHHHHhhhcCccc
Confidence 8888888877 5556666666653
No 168
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=63.39 E-value=40 Score=34.50 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=46.3
Q ss_pred HHhhhheeeEEecccCcCchhhhhhhh---HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH------HHHHHH
Q 021597 99 VIVAVGYGYVWWKGWKLPDMMFATRRS---LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN------KIVEIS 169 (310)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRn---ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~kld------e~~eis 169 (310)
...|++++|. ---+|.|=+.-|+.. ....++++.+|.+.+.+++..+++ +-++++++.++ +-..+.
T Consensus 93 ~~aaIi~~f~--GN~~~h~gV~~t~~si~~an~tv~~l~nqv~~l~~al~~t~~---~~L~~L~~il~~~~~~~~~~~~~ 167 (418)
T cd07912 93 CCAAIGVGLY--GNDETHDGVVQLTYSLRNANHTVAGIDNQTSDTEASLNVTVE---PQLTNLEDIFDARVNKTDYLQIV 167 (418)
T ss_pred HHHHHHHHhh--ccHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhHhHHHHHhCCCcchhhHHHHH
Confidence 4456666553 223444444444444 477788888888888888888876 34445544333 222334
Q ss_pred HHHHHHHHHhhhchhhh
Q 021597 170 QATQEEVTILRGRSKLI 186 (310)
Q Consensus 170 ~~i~~eV~~v~~dl~~i 186 (310)
+.++.+++.+..++..+
T Consensus 168 ~~~q~~~~n~~~~~~~~ 184 (418)
T cd07912 168 QGLQQMATNAAQQLTGI 184 (418)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44555555555444444
No 169
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=63.24 E-value=33 Score=34.56 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhc
Q 021597 60 DLLAEVSSVQQELSH 74 (310)
Q Consensus 60 dL~aQV~~LaqElr~ 74 (310)
+|..+..+|.+++..
T Consensus 231 ~L~~~ltrL~~~~~~ 245 (370)
T PLN03094 231 ELVGICTRLAREMEA 245 (370)
T ss_pred HHHHHHHHHHHHhhh
Confidence 366666666666554
No 170
>COG5283 Phage-related tail protein [Function unknown]
Probab=63.10 E-value=77 Score=36.74 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLs---qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (310)
|-+++...++--....+.+..||+-|+ .|.+.+-+.|+.++..-+..++|+.|+-+.+...+.+.+.+..-....|.
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~ 106 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN 106 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555556666554 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHhH
Q 021597 203 KLIEIEGKQDITTL 216 (310)
Q Consensus 203 Ki~~ie~kQd~Tn~ 216 (310)
++.++...++.+-.
T Consensus 107 ~~~sas~q~~~a~~ 120 (1213)
T COG5283 107 KLRSLSGQFGVASE 120 (1213)
T ss_pred HHHHHHhhhchhhH
Confidence 99999999887743
No 171
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.10 E-value=99 Score=26.60 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH---HhhhchhhhhhHHHHHH------
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT---ILRGRSKLIGDEFQSVR------ 194 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~---~v~~dl~~ig~Dv~~v~------ 194 (310)
..|++++..+++.++.+++.....-++. ...+-+-|++.......+++-+. .+..++.....++...+
T Consensus 60 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 60 GELGEALSKLGKAAEELSSLSEAQANQE---LVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999998888877655444 34455556666555555553222 23333344444443333
Q ss_pred --------HHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 021597 195 --------DIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (310)
Q Consensus 195 --------~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (310)
..|..|+.+|...|.....+..-...+|+
T Consensus 137 ~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~ 173 (218)
T cd07596 137 KAAPGIKPAKVEELEEELEEAESALEEARKRYEEISE 173 (218)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455555555555555555554444444
No 172
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=62.68 E-value=5 Score=38.34 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcC-CCceEEEeCCCCCCCCchhHH-HHHHhhhheeeEE-ecccC--cCchhhhhhhhHHHHHHHHHH
Q 021597 62 LAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGV-IVVIVAVGYGYVW-WKGWK--LPDMMFATRRSLSDACNSVAR 135 (310)
Q Consensus 62 ~aQV~~LaqElr~L-sr~iTVvn~~ssg~gg~~y~l-~a~iGavGYgYmw-WKGws--~SDlMfVTKRnms~Av~sv~K 135 (310)
.+--++|+++|++. ...+.|+-++|-|+. .-.+. -+++|+.|.-++| |.|-+ |-.-+.+|.++.+|-.++.+.
T Consensus 125 d~sA~~ir~~l~~~~g~~v~VIItDt~gr~-~R~G~~gvAIG~aG~~~l~d~~G~~D~~G~~L~~T~~avaDelAaaA~ 202 (243)
T TIGR01916 125 DASAEKIRRGLRELTGVDVGVIITDTNGRP-FREGQVGVAIGAAGLKVLRDWRGEKDLYGRELEVTEVAVADELAAAAN 202 (243)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCc-cccCCCCeeeeccCChHHHhcCCCcCCCCCeeeccHHHHHHHHHHHHH
Confidence 34568899999998 788888888855553 23333 4689999999998 77764 334568999988887766543
No 173
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.32 E-value=80 Score=33.32 Aligned_cols=43 Identities=5% Similarity=0.092 Sum_probs=19.5
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v 193 (310)
|..+++.+..+++++.+-.+..+.+...++.+++.+..+++.+
T Consensus 426 l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444333
No 174
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=61.82 E-value=1.4e+02 Score=29.78 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 021597 189 EFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie 208 (310)
++..|+..+..|..||...+
T Consensus 325 Ev~~l~~~i~~L~~~L~~a~ 344 (384)
T PF03148_consen 325 EVKELRESIEALQEKLDEAE 344 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 175
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=61.28 E-value=30 Score=26.50 Aligned_cols=15 Identities=7% Similarity=0.472 Sum_probs=9.2
Q ss_pred HHHHhHhhhhhhHHH
Q 021597 150 QLSSKITSVDRDVNK 164 (310)
Q Consensus 150 hLsqRI~~vD~klde 164 (310)
++.+||.+++.++|+
T Consensus 3 ~i~e~l~~ie~~l~~ 17 (71)
T PF10779_consen 3 DIKEKLNRIETKLDN 17 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666666665
No 176
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=61.01 E-value=83 Score=26.92 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHHHHHHHHH-----HHHHHHHHhHhhhhhhHHHHHHHHHH
Q 021597 127 SDACNSVARQLEDVYSSIS-----AAQRQLSSKITSVDRDVNKIVEISQA 171 (310)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~-----~aKrhLsqRI~~vD~klde~~eis~~ 171 (310)
++.+.++-..|-++.-.++ ..+..|.+||+.+...|++..++...
T Consensus 2 e~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~ 51 (128)
T PF09748_consen 2 EQQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQ 51 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555555555555554 56889999999999999999888887
No 177
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=60.96 E-value=1.2e+02 Score=26.72 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=62.8
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH---HHHHHHHHHH-----HHhhhchhhh
Q 021597 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV---EISQATQEEV-----TILRGRSKLI 186 (310)
Q Consensus 115 ~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~---eis~~i~~eV-----~~v~~dl~~i 186 (310)
+.|+|.=.-++..+-++.+-..|++++..=..|+.....=-+.+...+...+ .+-.++.+++ ......+..+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~ 102 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQ 102 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5678888888888888888888888887777776655544444444443211 2333333332 3334445556
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 187 GDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
-.-+..++.+++.+..||.++|-+
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666788888888888888888754
No 178
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=60.78 E-value=1.6e+02 Score=28.98 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=15.6
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 175 eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
+...+|.++.....++...+.-+..++..+..++.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~ 240 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESK 240 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 179
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=60.66 E-value=1.7e+02 Score=28.59 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=59.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH------HHHH
Q 021597 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI------VQTL 200 (310)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~------V~~L 200 (310)
.+++.+|+-.|--+...+..+-.++.++++..-..|-.. ..+.+.|...|..=..+.++|..++.. +..|
T Consensus 95 dddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~I----R~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~L 170 (271)
T PF13805_consen 95 DDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSI----RNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVL 170 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHH
Confidence 678888999999999999999999888877666665543 344456777777777788888887764 6677
Q ss_pred HHHHHHhhhh
Q 021597 201 ESKLIEIEGK 210 (310)
Q Consensus 201 e~Ki~~ie~k 210 (310)
|..|.+.|..
T Consensus 171 eqELvraEae 180 (271)
T PF13805_consen 171 EQELVRAEAE 180 (271)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776644
No 180
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=60.60 E-value=1.8e+02 Score=28.84 Aligned_cols=72 Identities=10% Similarity=0.094 Sum_probs=35.4
Q ss_pred HHHhHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 133 VARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 133 v~KqLeqVs~sL~~aK---rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
+-.||+|+-.....+. ..|+--.++..+|+|.|.. +--.++..+++|+++.+.--+++|.-|+.||..=+-+
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~---q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRV---QFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 4455555544433222 2233333444444444422 2224455666666666666666666666666544433
No 181
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=60.08 E-value=79 Score=31.63 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021597 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i 186 (310)
.|++=+..|+++-|...++++.+..-+++|..-...-+..+.++...+.+.
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445566667777777777777777776555444445555555555555
No 182
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=59.68 E-value=91 Score=25.90 Aligned_cols=19 Identities=0% Similarity=0.303 Sum_probs=10.4
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 021597 128 DACNSVARQLEDVYSSISA 146 (310)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~ 146 (310)
+-|..|..+|..+...+..
T Consensus 6 ~~v~~I~~~i~~i~~~v~~ 24 (151)
T cd00179 6 EEVEEIRGNIDKISEDVEE 24 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555433
No 183
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=59.58 E-value=1.1e+02 Score=28.41 Aligned_cols=116 Identities=27% Similarity=0.303 Sum_probs=63.5
Q ss_pred hhHHHHHHHHH--HhH-HHHHHHHHHHHHHHHHhH-------hhhhhhHHHHHHHHHHHHHHHHHhhhchhh--------
Q 021597 124 RSLSDACNSVA--RQL-EDVYSSISAAQRQLSSKI-------TSVDRDVNKIVEISQATQEEVTILRGRSKL-------- 185 (310)
Q Consensus 124 Rnms~Av~sv~--KqL-eqVs~sL~~aKrhLsqRI-------~~vD~klde~~eis~~i~~eV~~v~~dl~~-------- 185 (310)
|.|-+|...++ +.+ +...+.|-.||.+|.-=| .++=+.+|....++..+++++.++.....+
T Consensus 13 R~Lhdal~~l~~d~~~~~~~~~~ipdA~~rL~yV~~~TE~AA~~~l~~ve~~~p~~~~l~~~~~~l~~~w~~l~~~~~~~ 92 (214)
T PF04344_consen 13 RQLHDALRELGLDPRLMEEAAEEIPDARDRLNYVITMTEQAANRTLNAVEEALPLQDELREEAEELKARWQRLMARELEP 92 (214)
T ss_dssp HHHHHHHHHHTHHHHH-HHTTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--H
T ss_pred HHHHHHHHHcCCChhhHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 44555555543 333 555666777776664322 233344555566666666666655433222
Q ss_pred ---------hhhHHHHHHHHHHHHHHHHHHhh---hhhhHHhHHHHHHHHHHHhhccCCCccceec
Q 021597 186 ---------IGDEFQSVRDIVQTLESKLIEIE---GKQDITTLGVKKLCDRARELENGRPTELVQA 239 (310)
Q Consensus 186 ---------ig~Dv~~v~~~V~~Le~Ki~~ie---~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~ 239 (310)
+..-+..+.+....++..+-+|= .=||+|-+=|..+...++.+|..-..-+.--
T Consensus 93 ~e~~~l~~~~~~~l~~~~~~~~~~~~~l~eIm~Aq~FQDLTGQ~IkKVv~~l~~vE~~L~~ll~~~ 158 (214)
T PF04344_consen 93 DEFRELAHETDAFLQQVEENAQQLRAQLTEIMMAQDFQDLTGQRIKKVVNLLQEVEERLVQLLVIF 158 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTTT---
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222233333333334443332 3499999999999999999888766665543
No 184
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=59.57 E-value=1.2e+02 Score=28.40 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=38.5
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 021597 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (310)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (310)
..-|.+|...++++-..+++...=-..-...-..+..++..+..|++.....-..|+.+|..+...=+|
T Consensus 67 ~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 67 SKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333344444455555555567777777777777777777655443
No 185
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=59.17 E-value=77 Score=24.07 Aligned_cols=64 Identities=9% Similarity=0.238 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhh---hHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR---DVNKIVEISQATQEEVTILRGRSKLIGDE 189 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~---klde~~eis~~i~~eV~~v~~dl~~ig~D 189 (310)
+-+-|..+...|+.+...+..-++.-...+-..+. --++..+++..|+.....++..|..+..+
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888877766666666662 22333334444444444444444433333
No 186
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=58.84 E-value=72 Score=27.32 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHhHHHHH---HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021597 123 RRSLSDACNSVARQLEDVY---SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs---~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (310)
|-.+++=.+++...||+.- +-|.+-|+.|....+.|...-+....=...++.+|.++
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556665555443 23444555555555444444443333333333333333
No 187
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=58.83 E-value=1.5e+02 Score=27.45 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 021597 192 SVRDIVQTLE 201 (310)
Q Consensus 192 ~v~~~V~~Le 201 (310)
.++.++..+.
T Consensus 231 ~l~~~l~~l~ 240 (291)
T TIGR00996 231 ALDDALAALS 240 (291)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 188
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=58.71 E-value=66 Score=23.66 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=24.2
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 021597 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (310)
+|++-..-+++..++..+|.+++..=++.|..+...+..+...+..-..
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~ 57 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNS 57 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444444555666666666655555555544444444444444333333
No 189
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.55 E-value=48 Score=36.57 Aligned_cols=24 Identities=17% Similarity=0.378 Sum_probs=15.0
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHH
Q 021597 146 AAQRQLSSKITSVDRDVNKIVEIS 169 (310)
Q Consensus 146 ~aKrhLsqRI~~vD~klde~~eis 169 (310)
.....+..+|.++|++|+....-.
T Consensus 40 ~li~ki~~eir~~d~~l~~~Vr~q 63 (793)
T KOG2180|consen 40 SLIQKIQGEIRRVDKNLLAVVRTQ 63 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334456667778888777664433
No 190
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.40 E-value=87 Score=29.95 Aligned_cols=76 Identities=11% Similarity=0.098 Sum_probs=60.1
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (310)
++.-++|.++.+|-....|...+.++..++..|....+-=+..+-.+=.+|+..|..+...-+.+..|+..|-++.
T Consensus 55 e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 55 AIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999998888888877777766666666667788888888877777777777776644
No 191
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.38 E-value=30 Score=30.10 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=37.8
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 021597 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (310)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC 222 (310)
.++++.|..|+-..+.++-.|-+||..--.-+..+++|+++-.-...+==+++..+... .|+..+|
T Consensus 35 ee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-----sg~~l~~ 100 (118)
T KOG3385|consen 35 EEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-----SGISLLC 100 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-----CCcchHH
Confidence 34555555555556666666666666655666666666665554444444444444333 6777777
No 192
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=58.21 E-value=23 Score=26.99 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=4.3
Q ss_pred HhhhhhhHHHH
Q 021597 155 ITSVDRDVNKI 165 (310)
Q Consensus 155 I~~vD~klde~ 165 (310)
|+.+..++...
T Consensus 2 i~elEn~~~~~ 12 (55)
T PF05377_consen 2 IDELENELPRI 12 (55)
T ss_pred HHHHHHHHHHH
Confidence 33333343333
No 193
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=58.15 E-value=63 Score=27.52 Aligned_cols=15 Identities=7% Similarity=0.302 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhcC
Q 021597 61 LLAEVSSVQQELSHV 75 (310)
Q Consensus 61 L~aQV~~LaqElr~L 75 (310)
+..+++.+...++.|
T Consensus 31 ~~~~~~~~~~~~~~l 45 (229)
T PF03114_consen 31 LEEKFKQLEESIKKL 45 (229)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888888888777
No 194
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=58.11 E-value=1.5e+02 Score=27.06 Aligned_cols=84 Identities=13% Similarity=0.155 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhHh-hhhhhHHHHHHHHHHHHHH---HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 021597 142 SSISAAQRQLSSKIT-SVDRDVNKIVEISQATQEE---VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (310)
Q Consensus 142 ~sL~~aKrhLsqRI~-~vD~klde~~eis~~i~~e---V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~G 217 (310)
++|+.||++=..|-- .-.-.||++...-+..++. ...++...+....++..++..+..|+.++..++.++..-..-
T Consensus 61 ~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 61 EAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655443321 0223466666666666543 555566667777778888888888888888888776665555
Q ss_pred HHHHHHHH
Q 021597 218 VKKLCDRA 225 (310)
Q Consensus 218 V~~LC~f~ 225 (310)
-..|...+
T Consensus 141 Y~~L~~Im 148 (161)
T TIGR02894 141 YQTLIDIM 148 (161)
T ss_pred HHHHHHHH
Confidence 55555444
No 195
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=58.11 E-value=1.2e+02 Score=32.80 Aligned_cols=107 Identities=9% Similarity=0.122 Sum_probs=65.4
Q ss_pred chhhhhhhhHHH----HHHHHHHhH---HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 021597 117 DMMFATRRSLSD----ACNSVARQL---EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (310)
Q Consensus 117 DlMfVTKRnms~----Av~sv~KqL---eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~D 189 (310)
|+|+---..|+. +-..+++-. +...+.+...-.||.|.+|.-|.+++++..+...++.++..=.+.++.-..+
T Consensus 385 ~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~ 464 (607)
T KOG0240|consen 385 DFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRL 464 (607)
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 456555555553 333444443 5788889999999999999999999999999988888776555444444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 021597 190 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (310)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (310)
.+.++.-.+.+-.-....+..+.-......-||.
T Consensus 465 ~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~ 498 (607)
T KOG0240|consen 465 YEDIQQELSEIQEENEAAKDEVKEVLTALEELAV 498 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333333223333333344444555554
No 196
>PLN02678 seryl-tRNA synthetase
Probab=57.85 E-value=43 Score=34.48 Aligned_cols=63 Identities=11% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
+-.-+|.+.++++.+..+ .++++++|... ..-.++.+.+..++..+.+-+..||.++..++.+
T Consensus 38 ld~~~r~l~~~~e~lr~e---rN~~sk~I~~~-k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKE---FNKLNKEVAKL-KIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777776654 45567776541 1222333344444444444444455555554444
No 197
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=57.50 E-value=1.3e+02 Score=30.38 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=52.4
Q ss_pred HHhhhheeeEEecccCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH---HHHHHHHHHHH
Q 021597 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK---IVEISQATQEE 175 (310)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde---~~eis~~i~~e 175 (310)
..+++|-|+ +---..+|=|+.--.++.||-..++.-=.+|++.....+.-+.+.+++|+.-.++ -.++.+.+++.
T Consensus 73 c~aaigvG~--yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~ 150 (406)
T PF04906_consen 73 CCAAIGVGF--YGNSETNDGVYQLIYSLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQ 150 (406)
T ss_pred HHHHHHccc--ccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445666543 2334467778877777778877777555666666666666667777777665533 33444445555
Q ss_pred HHHhhhchhhhh
Q 021597 176 VTILRGRSKLIG 187 (310)
Q Consensus 176 V~~v~~dl~~ig 187 (310)
++.+-..++.|.
T Consensus 151 ~~~v~~~l~~l~ 162 (406)
T PF04906_consen 151 AENVVQQLDELP 162 (406)
T ss_pred HHHHHHHHhcCc
Confidence 555555555444
No 198
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=57.49 E-value=1e+02 Score=25.22 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=45.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 021597 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (310)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (310)
++.|..|+.+..+.+...+-||.+++++=.....+++.++.--..|+.+-..+..-|+.=..-+..|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777777777777777766666667666666666655555555444
No 199
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=57.45 E-value=1.2e+02 Score=25.81 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=59.6
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 021597 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (310)
.+..++.+.|+.|-.=|. -.+.=...+..|..++.+++..++....-.+..++++.+....+.....+...++..+..+
T Consensus 28 ~~~~~~~~vin~i~~Ll~-~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 28 ESEDNDVRVINCIYDLLQ-QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred cccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544442 2344455677788888888888888877777778888877777777777777777777777
Q ss_pred HHHHHHhhh
Q 021597 201 ESKLIEIEG 209 (310)
Q Consensus 201 e~Ki~~ie~ 209 (310)
+.++.....
T Consensus 107 ~~~~k~~ke 115 (151)
T PF11559_consen 107 EAKLKQEKE 115 (151)
T ss_pred HHHHHHHHH
Confidence 777665544
No 200
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=57.36 E-value=50 Score=27.77 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021597 123 RRSLSDACNSVARQLEDVYSSISAAQRQLS 152 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLs 152 (310)
||++-++++.+.+||.+.++.|.+-|+++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~ 32 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQ 32 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555443
No 201
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=57.27 E-value=11 Score=39.87 Aligned_cols=75 Identities=11% Similarity=0.226 Sum_probs=52.1
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh---chhhhhhH
Q 021597 120 FATRRSLSDACNSVARQLEDVYSSIS-------AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG---RSKLIGDE 189 (310)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~-------~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~---dl~~ig~D 189 (310)
=|-+++=.+|++.++++|..+.+-.. ..=.++.+||+++++++|+...=.-.-+.|+-.+-+ .|..-..+
T Consensus 363 AAD~kSTQ~aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlleN~~tld~~Ds~ 442 (550)
T PF00509_consen 363 AADLKSTQKAIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLENQRTLDLHDSN 442 (550)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhccccchhhhHHH
Confidence 36789999999999999998887552 233468899999999999987655556666544433 33333344
Q ss_pred HHHHH
Q 021597 190 FQSVR 194 (310)
Q Consensus 190 v~~v~ 194 (310)
|.+++
T Consensus 443 ~~~L~ 447 (550)
T PF00509_consen 443 VNNLY 447 (550)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 202
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=57.20 E-value=55 Score=31.53 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 169 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis 169 (310)
.|..-..-+..+|+.+...|....+..+++...|...|....+..
T Consensus 3 ~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~ 47 (304)
T PF02646_consen 3 QLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEAN 47 (304)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555555555555555555555555544444433333
No 203
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=56.91 E-value=1e+02 Score=30.55 Aligned_cols=17 Identities=12% Similarity=-0.036 Sum_probs=13.6
Q ss_pred HHHHhhhheeeEEeccc
Q 021597 97 IVVIVAVGYGYVWWKGW 113 (310)
Q Consensus 97 ~a~iGavGYgYmwWKGw 113 (310)
++++|+.||.|.++-..
T Consensus 40 ~~alg~~~~~~~~~q~~ 56 (372)
T PF04375_consen 40 ALALGAGGWYWQQQQLQ 56 (372)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36999999999988653
No 204
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.88 E-value=67 Score=27.98 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 021597 191 QSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie 208 (310)
.++..-+..|+.||..+.
T Consensus 119 ~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 119 EELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444444333
No 205
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=56.69 E-value=1e+02 Score=24.77 Aligned_cols=54 Identities=4% Similarity=0.129 Sum_probs=30.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021597 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (310)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i 186 (310)
+...|+.-++.|...-....+|++.+.....+-.++.+.++.++.-+...+..+
T Consensus 23 ~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~l 76 (88)
T PF10241_consen 23 TLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSL 76 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555566666666666666666666666655555444333
No 206
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=56.68 E-value=76 Score=32.91 Aligned_cols=107 Identities=13% Similarity=0.247 Sum_probs=66.7
Q ss_pred cCchhhhhhhhHHH----HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 021597 115 LPDMMFATRRSLSD----ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (310)
Q Consensus 115 ~SDlMfVTKRnms~----Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv 190 (310)
.-|......+.|.. ....+...|++++..|..+.+.|....+.++-.=++. ..+++....++.-....|.++
T Consensus 249 ~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L----~ele~RL~~l~~LkrKyg~s~ 324 (563)
T TIGR00634 249 LLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERL----NEIEERLAQIKRLKRKYGASV 324 (563)
T ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHHHHHHHHhCCCH
Confidence 44566666666644 6677888888888899999998888888775322222 234455555555555566666
Q ss_pred HHHHHHHHHHHHHHHHhhh----------hhhHHhHHHHHHHHHH
Q 021597 191 QSVRDIVQTLESKLIEIEG----------KQDITTLGVKKLCDRA 225 (310)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~----------kQd~Tn~GV~~LC~f~ 225 (310)
+.+......++.+++.++. ..+-...-+..+|+-+
T Consensus 325 e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~L 369 (563)
T TIGR00634 325 EEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVAL 369 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665554 4444444455555444
No 207
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=56.61 E-value=93 Score=33.12 Aligned_cols=93 Identities=6% Similarity=0.138 Sum_probs=56.3
Q ss_pred CcCchhhhhhhhHHHHH----HHH-------HHhHHHHHHHHHHHHHHHHHhHhhhhh--------hHHHHHHHHHHHHH
Q 021597 114 KLPDMMFATRRSLSDAC----NSV-------ARQLEDVYSSISAAQRQLSSKITSVDR--------DVNKIVEISQATQE 174 (310)
Q Consensus 114 s~SDlMfVTKRnms~Av----~sv-------~KqLeqVs~sL~~aKrhLsqRI~~vD~--------klde~~eis~~i~~ 174 (310)
.-++.+.-+-+.|+++. +.. .-|+..|+.-+.-..+.|..||..+.. .|++.....+.+..
T Consensus 333 Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~ 412 (531)
T PF15450_consen 333 QETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEK 412 (531)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888877664 333 334444455555566666666666543 24445555666666
Q ss_pred HHHHhhhchhhhhhHHHHHHHHH----HHHHHHHHH
Q 021597 175 EVTILRGRSKLIGDEFQSVRDIV----QTLESKLIE 206 (310)
Q Consensus 175 eV~~v~~dl~~ig~Dv~~v~~~V----~~Le~Ki~~ 206 (310)
...++++.++.+..||+.|.... +.++.||+.
T Consensus 413 ~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdt 448 (531)
T PF15450_consen 413 HLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDT 448 (531)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccH
Confidence 67777777777777777776553 344555553
No 208
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=56.56 E-value=1.3e+02 Score=30.81 Aligned_cols=84 Identities=8% Similarity=0.147 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH---HHHHHhHhhhhh------------------hHHHHHHHHHHHHHHHHHhhhchh
Q 021597 126 LSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDR------------------DVNKIVEISQATQEEVTILRGRSK 184 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aK---rhLsqRI~~vD~------------------klde~~eis~~i~~eV~~v~~dl~ 184 (310)
-+.++..+-++|+++.+.+++++ ..+.+|+.-++. .+.+..++...+.++..+++....
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR 148 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666555444332 334444433322 234445555555566666666666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 185 LIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
....+++.+++-+..|+.+|..+..
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6666666666666666666655543
No 209
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=56.47 E-value=60 Score=32.85 Aligned_cols=65 Identities=14% Similarity=0.292 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 021597 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (310)
+-..+|.|..+|+++..+ .++++++|+... .-+++.+.+..++..+++-+..||.++..++.+-+
T Consensus 33 ld~~~r~l~~~~~~lr~~---rn~~sk~i~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 33 LDEERRELQTELEELQAE---RNALSKEIGQAK-RKGEDAEALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888888777665 455677776421 11224444555556666556666666666655533
No 210
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=56.37 E-value=95 Score=31.35 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc-hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 021597 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR-SKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d-l~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (310)
.+-..+|++..+++++. .+.++++++|+.... -.++ .+.+..++..+.+-+..||.++..++.+.+.
T Consensus 34 ~ld~~~r~~~~~~~~l~---~erN~~sk~i~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQ---AKRNELSKQIGKAKG-QKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777766 566777888866321 1123 4455555556665556666666666655443
No 211
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=56.22 E-value=88 Score=33.13 Aligned_cols=83 Identities=14% Similarity=0.349 Sum_probs=61.9
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 021597 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (310)
+.|..+-..-..++.++.+.++.|..-|+.+...|...-+++....+=...+.+++..+ ...|.+...+.+--..|
T Consensus 131 a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~----~~~g~~~NdLlDqRD~L 206 (552)
T COG1256 131 AARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKV----KAAGNDPNDLLDQRDQL 206 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCchhHHHHHHHH
Confidence 66777778888899999999999999998888888776666666555555555666555 56677777777777777
Q ss_pred HHHHHHh
Q 021597 201 ESKLIEI 207 (310)
Q Consensus 201 e~Ki~~i 207 (310)
..+|..+
T Consensus 207 v~eLs~~ 213 (552)
T COG1256 207 VDELSQL 213 (552)
T ss_pred HHHHHhh
Confidence 7777654
No 212
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=56.04 E-value=1.3e+02 Score=27.01 Aligned_cols=58 Identities=7% Similarity=0.191 Sum_probs=34.6
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021597 119 MFATRRSLSDACNSVARQLEDVYSSI-SAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (310)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL-~~aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (310)
+..--..+.+++..+.++++++.+.+ ...++...++|-.+...+..........++-+
T Consensus 116 l~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l 174 (292)
T PF01544_consen 116 LDEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVL 174 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445566777888888888888877 44455555555555555555444444443333
No 213
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=55.99 E-value=55 Score=30.77 Aligned_cols=77 Identities=16% Similarity=0.231 Sum_probs=37.2
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHH-HHHHHHHHhhhchhhhhhHHHHHHH
Q 021597 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ-ATQEEVTILRGRSKLIGDEFQSVRD 195 (310)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~-~i~~eV~~v~~dl~~ig~Dv~~v~~ 195 (310)
|-|-.+||.|+++...+++.|..+++.=. .-|+.-+..|.+..+...++-. +-.+|...+.+.|...-.++++++.
T Consensus 48 ~~lv~~rkela~~~~~fs~al~~L~~~E~---t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~ 124 (219)
T cd07621 48 DKMTRKHKDVADSYIKISAALTQLATSEP---TPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKD 124 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 33445667777777777777666665422 1333333333333333222222 2223455555555555555555554
Q ss_pred H
Q 021597 196 I 196 (310)
Q Consensus 196 ~ 196 (310)
+
T Consensus 125 ~ 125 (219)
T cd07621 125 L 125 (219)
T ss_pred H
Confidence 3
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=55.73 E-value=43 Score=31.72 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 021597 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 171 ~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (310)
..+.||.++|+.+++...+++.+++--..|=..|++
T Consensus 65 ~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 65 DNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666554444444444
No 215
>PRK11032 hypothetical protein; Provisional
Probab=55.67 E-value=61 Score=29.25 Aligned_cols=51 Identities=14% Similarity=0.340 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH----hhhchhhhhhHH
Q 021597 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI----LRGRSKLIGDEF 190 (310)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~----v~~dl~~ig~Dv 190 (310)
|++|.+.|...++.|..=|+.....+.+ ..+.|++|+.. +|+||+++...+
T Consensus 12 l~~v~~~l~~~~~~l~~~ve~a~~~~~~---~~elT~dEl~lv~~ylkRDL~ef~~~~ 66 (160)
T PRK11032 12 VASLTERLRNGERDIDALVESARKRVDA---AGELTRDEVDLITRAVRRDLEEFARSY 66 (160)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666766665555545544444444 44456666543 567777776643
No 216
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=55.58 E-value=70 Score=30.83 Aligned_cols=61 Identities=8% Similarity=0.211 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-HHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 021597 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIV-EISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~-eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V 197 (310)
+|+++-.-|...=+.+.+||+.+..+..+.. .+.+++ +.+.+...++.++..++.++..+.
T Consensus 3 ~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l-~~l~~~~~~~~~l~~~~~~L~~aL 64 (304)
T PF02646_consen 3 QLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQL-KQLSEANGEIQQLSQEASNLTSAL 64 (304)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444455444444332221 122211 223333444455555555555444
No 217
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=55.43 E-value=93 Score=30.26 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHh---HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 141 YSSISAAQRQLSSK---ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 141 s~sL~~aKrhLsqR---I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
+..|+..-||+.+. |..-|+.|=+.-|.+-..-+||.+++.+-.+|.++++.|-.--..||.-|+.+|.+
T Consensus 84 s~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k 156 (254)
T KOG2196|consen 84 SLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETK 156 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888765 55668888888889999999999999999999999999988888888888877765
No 218
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=55.33 E-value=68 Score=29.39 Aligned_cols=57 Identities=12% Similarity=0.402 Sum_probs=26.9
Q ss_pred HHHHhHHHHHH----HHHHHHHHHHHhHhhhhhhHHHHHHHH---HHHHHHHHHhhhchhhhhh
Q 021597 132 SVARQLEDVYS----SISAAQRQLSSKITSVDRDVNKIVEIS---QATQEEVTILRGRSKLIGD 188 (310)
Q Consensus 132 sv~KqLeqVs~----sL~~aKrhLsqRI~~vD~klde~~eis---~~i~~eV~~v~~dl~~ig~ 188 (310)
.|-+.|+.+.. .+..++++|...|+.+..+++...+++ +.++++++.+..+|++|..
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 334456666666666666655544443 4445566665555555544
No 219
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.31 E-value=1.7e+02 Score=32.25 Aligned_cols=99 Identities=11% Similarity=0.086 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (310)
..+.++|..+.+|++-+-....+..+...++...+.+++-+...+.+.-..-..+++..+-....++..+|--+..++..
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999988888888888888888888888888888888888888
Q ss_pred HHHhhhhhhHHhHHHHHHH
Q 021597 204 LIEIEGKQDITTLGVKKLC 222 (310)
Q Consensus 204 i~~ie~kQd~Tn~GV~~LC 222 (310)
+++....=+-.+.-+..+-
T Consensus 195 ~~~~~~ql~~~~q~~~~~~ 213 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQELQ 213 (716)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8776655444444444433
No 220
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=55.31 E-value=1.7e+02 Score=34.61 Aligned_cols=41 Identities=7% Similarity=0.089 Sum_probs=16.5
Q ss_pred hchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 021597 181 GRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (310)
Q Consensus 181 ~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (310)
+-+..+..|+...++.+...+......|.+-.-++.-+..|
T Consensus 1584 ~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL 1624 (1758)
T KOG0994|consen 1584 DAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGEL 1624 (1758)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444433344434333
No 221
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=55.30 E-value=98 Score=29.01 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHH-HHHHHHhHhhhhhhHH-------HHHHHHHHHHHH--H----HHhhhchhhhhhH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAA-QRQLSSKITSVDRDVN-------KIVEISQATQEE--V----TILRGRSKLIGDE 189 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~a-KrhLsqRI~~vD~kld-------e~~eis~~i~~e--V----~~v~~dl~~ig~D 189 (310)
.+..+.+..+.++++++.+.+-.. +++...||-++...+- .+.++...++.. . .+.+..+..+.++
T Consensus 145 d~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~dv~~~ 224 (318)
T TIGR00383 145 DSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDH 224 (318)
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHH
Confidence 345567778888888887776442 3344444444444443 333443333211 1 2233344555557
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 021597 190 FQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~ 209 (310)
++.+.+++..+..+++.+..
T Consensus 225 ~~~l~~~~~~~~e~l~~l~d 244 (318)
T TIGR00383 225 ILSLLEMIETYRELLSSLMD 244 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776553
No 222
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=55.27 E-value=1.3e+02 Score=26.94 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 021597 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (310)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (310)
+.+.+.|+.+.+.+..=+.|...=+..|..=-+++.+=....+..+.++..-+..-+.+|..++.-+..+.++|
T Consensus 106 ~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 106 EDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444555555555555555556666554444444433
No 223
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=55.17 E-value=49 Score=29.75 Aligned_cols=49 Identities=24% Similarity=0.387 Sum_probs=28.6
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 021597 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (310)
=|+.+...-++.-+|.+..++|...++..|+.+..++..+-.-|..||.
T Consensus 7 ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~ 55 (159)
T PF05384_consen 7 TIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEK 55 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666666666666666666666665555555555555543
No 224
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=54.98 E-value=1.3e+02 Score=34.24 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (310)
|.+.---+.+++-|-|.-+-+...+++|.--=+.....+.+..+..+-...++.+.......|+.++..-+.-+++++.|
T Consensus 273 ~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk 352 (1265)
T KOG0976|consen 273 RQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDK 352 (1265)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 33333345567777777777777777666555555555555666666667788888888888999999999999999999
Q ss_pred HHHhhhhhhHHhHHHHHHHHHH
Q 021597 204 LIEIEGKQDITTLGVKKLCDRA 225 (310)
Q Consensus 204 i~~ie~kQd~Tn~GV~~LC~f~ 225 (310)
+.++|.+-|.+.+-|..|-+--
T Consensus 353 ~~eLEKkrd~al~dvr~i~e~k 374 (1265)
T KOG0976|consen 353 LNELEKKRDMALMDVRSIQEKK 374 (1265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999988888776543
No 225
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=54.96 E-value=66 Score=25.34 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 021597 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (310)
+|+.=...+-.|=..|..+|+.|-.+-++.. ++-.+++....+...|-..++..+.+|=+||+.
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3333333333344444444444444333333 333333334455555666666666666666654
No 226
>PLN03184 chloroplast Hsp70; Provisional
Probab=54.88 E-value=1.4e+02 Score=32.00 Aligned_cols=66 Identities=11% Similarity=0.271 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHH-----HHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 142 SSISAAQRQLSSKITSVDRDVNKIV-----EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 142 ~sL~~aKrhLsqRI~~vD~klde~~-----eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
.....+|.+|..-|..+..+|++.. +-.+.+++.+.+.+.=|. ++|.+.+++....|+..+..++.
T Consensus 562 ~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~--~~d~~~ik~~~~~l~~~l~~l~~ 632 (673)
T PLN03184 562 RDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIA--SGSTQKMKDAMAALNQEVMQIGQ 632 (673)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666664321 111223333333333333 23444555444444444444443
No 227
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=54.59 E-value=33 Score=36.55 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=9.9
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHH
Q 021597 175 EVTILRGRSKLIGDEFQSVRDIVQ 198 (310)
Q Consensus 175 eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (310)
.+..+...++......+.+++.+.
T Consensus 386 ~l~~le~~l~~~~~~~~~L~~~~~ 409 (656)
T PRK06975 386 QFAQLDGKLADAQSAQQALEQQYQ 409 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444
No 228
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=54.43 E-value=29 Score=31.57 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 021597 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (310)
Q Consensus 161 klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~ 192 (310)
+|.++.+.-.+|.+.|.+..++|+.|++++..
T Consensus 129 ~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 129 KLKDNIVTEKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred hHhhhccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444455555555555555555544443
No 229
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.30 E-value=1.5e+02 Score=25.80 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=51.2
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 021597 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (310)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (310)
..|++++..++|+..+|-..==+.|-|=.+.|+.+.+--++++..-...+.+=..+..|.=--|.-.+
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~ 95 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMR 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888777777888888888888888888888888877766666655444444333
No 230
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.28 E-value=71 Score=37.09 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 021597 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (310)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (310)
++.-...+...-+|+++.|..+.+++++-..-...+.+.....+..+.+...++.++...-..++.+++.+..+=+....
T Consensus 396 ~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~ 475 (1293)
T KOG0996|consen 396 LEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETE 475 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33344455666677777777777777776666666666666777777777777777777777777777766665555555
Q ss_pred HHH
Q 021597 217 GVK 219 (310)
Q Consensus 217 GV~ 219 (310)
|+.
T Consensus 476 ~~~ 478 (1293)
T KOG0996|consen 476 GIR 478 (1293)
T ss_pred hhH
Confidence 543
No 231
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.21 E-value=75 Score=36.91 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH-HHHHHHHHHHHhhhhhhHHhHHHHHH
Q 021597 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD-IVQTLESKLIEIEGKQDITTLGVKKL 221 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~-~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (310)
.|...-+++..+...+++.+.++.+....++++...++.+++.|..-+..++. .+. ++.|+..+...-+.-..-+.+.
T Consensus 960 ~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~ 1038 (1293)
T KOG0996|consen 960 DLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQP 1038 (1293)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhH
Confidence 44445556667777777888888888888888888888888888888888887 555 8888887777766666666665
Q ss_pred HH
Q 021597 222 CD 223 (310)
Q Consensus 222 C~ 223 (310)
-.
T Consensus 1039 ~k 1040 (1293)
T KOG0996|consen 1039 EK 1040 (1293)
T ss_pred HH
Confidence 43
No 232
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=54.17 E-value=1.9e+02 Score=30.24 Aligned_cols=80 Identities=20% Similarity=0.366 Sum_probs=50.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH--HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 021597 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI--VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (310)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~--~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (310)
++.++.+.++-.++...+..+ ++|..|...+.+.+++. .++...++.++.+.-.++..+..+++....+...|+ +|
T Consensus 28 ~eV~~~I~~~y~df~~~~~~~-~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~-~L 105 (593)
T PF06248_consen 28 EEVHSMINKKYSDFSPSLQSA-KDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLE-QL 105 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 344444555555555555444 35667777777777443 225677778888888888888888887777766665 34
Q ss_pred HHhh
Q 021597 205 IEIE 208 (310)
Q Consensus 205 ~~ie 208 (310)
.+++
T Consensus 106 ~~i~ 109 (593)
T PF06248_consen 106 QEID 109 (593)
T ss_pred HHHH
Confidence 4333
No 233
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=53.92 E-value=4.3 Score=34.74 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 021597 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (310)
Q Consensus 176 V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (310)
+......+...+.-+..+...+..|..|+..++..++.
T Consensus 47 ~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~ 84 (138)
T PF06009_consen 47 ISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSEN 84 (138)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333334444444555555566666666666666655
No 234
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=53.91 E-value=75 Score=27.45 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=34.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhh-------hhHHHHHHHHHHHHHHHHHhhhchh
Q 021597 131 NSVARQLEDVYSSISAAQRQLSSKITSVD-------RDVNKIVEISQATQEEVTILRGRSK 184 (310)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLsqRI~~vD-------~klde~~eis~~i~~eV~~v~~dl~ 184 (310)
+.+..|++.+...+...|+++.+=-|+.| .++||..+-...+...+..++.|++
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVs 64 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVS 64 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45778888888888888888876665544 3455555544444444444444443
No 235
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=53.89 E-value=90 Score=32.37 Aligned_cols=45 Identities=11% Similarity=0.341 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEI 168 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLs---qRI~~vD~klde~~ei 168 (310)
..+.+.+.++--+|+.+...|..-...+. .|++.+..+|.....+
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~L 316 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRL 316 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 56666677777777777777766555443 3455555555544443
No 236
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=53.70 E-value=75 Score=25.89 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~ 156 (310)
+...++.+-+....|-+.|..+...|+.=++
T Consensus 45 ~~~~~~~~~~~~~~vi~~L~~a~~~l~~I~~ 75 (113)
T PF02520_consen 45 VQAQKEEVRKNVTAVISNLSSAFAKLSAILD 75 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333333333333333333333333333333
No 237
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.66 E-value=1.7e+02 Score=28.76 Aligned_cols=85 Identities=7% Similarity=0.119 Sum_probs=51.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 021597 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (310)
-+.++++.-..+...-+++.++-+.+++-+++....+..+.+-+.+.|..+-..-.++..+..+...-...+.++-....
T Consensus 216 ~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~r~~l~~~l~~l~~~~~~~~~~~~~~~~ll~~~p 295 (359)
T COG1463 216 ASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATLLVDYLPGLEQLLHGLP 295 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 34455555556666667777777777777777777777777777777776665555555555555544444444444333
Q ss_pred HHhHH
Q 021597 213 ITTLG 217 (310)
Q Consensus 213 ~Tn~G 217 (310)
.....
T Consensus 296 ~~~~~ 300 (359)
T COG1463 296 TYAAN 300 (359)
T ss_pred hhhhh
Confidence 33333
No 238
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=53.54 E-value=54 Score=33.28 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=39.1
Q ss_pred CCCCCC--chhHHHHHHhhhheeeEEecccCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH
Q 021597 86 GSGTGA--KKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN 163 (310)
Q Consensus 86 ssg~gg--~~y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~kld 163 (310)
++|... -.+.+++++|+-||-|.+..-- .....-+.+..+|+.......+.+..|.+.+..++.++.
T Consensus 34 ~~g~~l~~~aili~la~g~g~y~~~~qq~~-----------~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~ 102 (390)
T PRK10920 34 RTGLVLSAVAIAIALAAGAGLYYHGKQQAQ-----------NQTATNDALANQLTALQKAQESQKQELEGILKQQAKALD 102 (390)
T ss_pred CccHHHHHHHHHHHHHHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346543 3788878999999999999732 123444455555555555544444444444444444443
Q ss_pred H
Q 021597 164 K 164 (310)
Q Consensus 164 e 164 (310)
+
T Consensus 103 ~ 103 (390)
T PRK10920 103 Q 103 (390)
T ss_pred H
Confidence 3
No 239
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=53.43 E-value=99 Score=31.62 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=56.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-----------HHHHHHhhhchhhhhhHHHHHHHH
Q 021597 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT-----------QEEVTILRGRSKLIGDEFQSVRDI 196 (310)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i-----------~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (310)
.+...--+.|++--..+....+++..+++.++.++.-...+.... ...+.++..-+..++..+..++..
T Consensus 67 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (525)
T TIGR02231 67 RPDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTE 146 (525)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555666667777777777776555555322 114566667777777778888888
Q ss_pred HHHHHHHHHHhhhhhhHHhHH
Q 021597 197 VQTLESKLIEIEGKQDITTLG 217 (310)
Q Consensus 197 V~~Le~Ki~~ie~kQd~Tn~G 217 (310)
...|+.++..++.+......-
T Consensus 147 ~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 147 DREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877775555433
No 240
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=53.40 E-value=1.8e+02 Score=31.08 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=15.7
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 021597 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 176 V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (310)
...+++.+.....-++.-++-+..|..-|..+-..+|
T Consensus 285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RD 321 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRD 321 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433333
No 241
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.97 E-value=39 Score=37.85 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=48.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 021597 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (310)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (310)
+.=-|||++=-++|..-+++|++||+.|.+++-.+++..+.+.....-....+++..-.|+..+++
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~k 501 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEK 501 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888889999999999999999999888887777766665555555555555555555554
No 242
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=52.68 E-value=1.3e+02 Score=29.53 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhh
Q 021597 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (310)
Q Consensus 170 ~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~ 228 (310)
+..+.|+....+++.+...++..+++-+...-+||.+++.+--.-..-|.++=-=++++
T Consensus 203 ~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 203 ELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555555555555555555666666655554444444444334443
No 243
>PHA03395 p10 fibrous body protein; Provisional
Probab=52.65 E-value=43 Score=27.71 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=3.2
Q ss_pred hhhhhhHH
Q 021597 156 TSVDRDVN 163 (310)
Q Consensus 156 ~~vD~kld 163 (310)
..||+|+|
T Consensus 14 kavd~KVd 21 (87)
T PHA03395 14 KAVSDKVD 21 (87)
T ss_pred HHHhhHHH
Confidence 33444443
No 244
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.55 E-value=41 Score=33.03 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=45.0
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 021597 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (310)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (310)
-.=|.-|...||.|-++|+++.|.-.+.+.+..+-..++++...-++.++.-+.-|-..|
T Consensus 104 DNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 104 DNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344788999999999999999999999999887666666666666666665555554444
No 245
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=52.32 E-value=1.9e+02 Score=26.52 Aligned_cols=61 Identities=10% Similarity=0.199 Sum_probs=35.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
=++++...|..++.|+-+.++-.+.++.+..+....+++...+++.+++-+...|-+-.++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555555555555555666666666665555555554443
No 246
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=52.28 E-value=1.6e+02 Score=31.50 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~e 167 (310)
.+..++...+..-|+.--..+...=+.|..+|.+|.+++|-+.+
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEq 379 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQ 379 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 56677777788777776666777778899999999999887654
No 247
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=52.17 E-value=65 Score=31.43 Aligned_cols=60 Identities=13% Similarity=0.245 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLs---qRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (310)
=+.++++.....|+...+.|+..+.+|. .+|+.+-.+.++...=...+++++......+.
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3666777777777777777776665543 34444444444444444444445444444433
No 248
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=52.16 E-value=44 Score=30.82 Aligned_cols=63 Identities=16% Similarity=0.263 Sum_probs=22.7
Q ss_pred hhHHHHHHhhhheeeEEecccCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q 021597 93 KYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (310)
Q Consensus 93 ~y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~ 156 (310)
.|+-.+++++|++-|+| .=++-+.=.+-.++...++...=...+..-.+++.+|++.+....+
T Consensus 35 ~yGWyil~~~I~ly~l~-qkl~~~~r~~r~~~~~~~~~~~dpd~v~~rqEa~eaAR~RmQEE~d 97 (190)
T PF06936_consen 35 SYGWYILFGCILLYLLW-QKLSPSFRSLRERRQLDAAAKKDPDVVVRRQEAMEAARRRMQEELD 97 (190)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555554444 4343322222234444444433344556678888888888765443
No 249
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=52.02 E-value=95 Score=29.49 Aligned_cols=101 Identities=15% Similarity=0.219 Sum_probs=51.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH-----H
Q 021597 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI-----E 206 (310)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~-----~ 206 (310)
++-+|++..-+.=++-|.++..-++.++.++.+.+..-+.+...-+-+-.....-..|+..+++--.+|-.... +
T Consensus 6 sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq~~~~LaE~~~~~qyyr 85 (226)
T KOG3067|consen 6 SIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQKYRMLAELPPAGQYYR 85 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhhcCCccceEE
Confidence 55566666655555555555554444444444333332222211111111111122334444444444443332 4
Q ss_pred hhhhhhHHhHHHHHHHHHHHhhccCC
Q 021597 207 IEGKQDITTLGVKKLCDRARELENGR 232 (310)
Q Consensus 207 ie~kQd~Tn~GV~~LC~f~~~~~~~~ 232 (310)
..++=++..+++.+|..|+..++-+-
T Consensus 86 y~~~w~~~~Q~vv~l~alv~~Let~~ 111 (226)
T KOG3067|consen 86 YNGHWRRSTQRVVSLPALVAWLETGT 111 (226)
T ss_pred ecchHHHHHHHHHHHHHHHHHHhhcc
Confidence 44567888999999999999988773
No 250
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.00 E-value=1.1e+02 Score=27.41 Aligned_cols=74 Identities=12% Similarity=0.140 Sum_probs=52.3
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHH-HHHHHHHhhhhhhHHhHHHHHHHH
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT-LESKLIEIEGKQDITTLGVKKLCD 223 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~-Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (310)
++..+|+.|+.+|.....+...+.+.-.++..|+..+|.-+..+-..-.+ |+..+..+...-+....+...|-+
T Consensus 8 ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~ 82 (185)
T cd07628 8 EIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNK 82 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777788888888888777777777766 777777666555555555555544
No 251
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=51.90 E-value=1.3e+02 Score=34.14 Aligned_cols=113 Identities=20% Similarity=0.223 Sum_probs=59.2
Q ss_pred hhhhhhHHHHHHHHHHhHHHHH---------HHHHHHH----HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021597 120 FATRRSLSDACNSVARQLEDVY---------SSISAAQ----RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (310)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs---------~sL~~aK----rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i 186 (310)
|.+.+...+=+.++.+||+.|+ .+.+..| ..|..+|+.++....+ +..+|..+...+.+.
T Consensus 735 ~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~e-------l~a~v~~~~~qi~~l 807 (984)
T COG4717 735 EQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEE-------LHAQVAALSRQIAQL 807 (984)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 5678888888888999998642 1222222 0111122222222221 122222222222211
Q ss_pred --hhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhccCCCccceec
Q 021597 187 --GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQA 239 (310)
Q Consensus 187 --g~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~ 239 (310)
|+.+..++++-..|=.+|.++--+=-..-.++..|-+.++..+..+.|..+|-
T Consensus 808 E~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~rlP~vi~~ 862 (984)
T COG4717 808 EGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLPAVIQE 862 (984)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Confidence 23344555566666666666665555566667777777777777777776654
No 252
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.83 E-value=1.9e+02 Score=26.30 Aligned_cols=38 Identities=11% Similarity=0.377 Sum_probs=24.8
Q ss_pred cCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021597 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (310)
Q Consensus 113 ws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsq 153 (310)
|+|+.-... .+.+.++.+.+.++++...++..+..|..
T Consensus 57 WsFps~~~~---~~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 57 WSFPSQAKQ---KRQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred EecChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678866554 44566777777777777776666666544
No 253
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.81 E-value=1.9e+02 Score=29.56 Aligned_cols=69 Identities=4% Similarity=0.080 Sum_probs=44.2
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021597 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (310)
Q Consensus 116 SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ 185 (310)
-+||++-+.-|.+.-+-. ..|.+-+|.|+.-++||-.-+++|+.++-..++-+.-.+..|.|+.+|.++
T Consensus 217 eklR~r~eeeme~~~aeq-~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQ-ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 356666666666554433 346666667777777777777777766666666666666777776666655
No 254
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=51.77 E-value=1.3e+02 Score=28.16 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=22.6
Q ss_pred HhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 021597 178 ILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 178 ~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
....++..|.+||+.|.+-|.+||.=|.
T Consensus 157 ~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 157 KSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788889999999999999987664
No 255
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=51.64 E-value=65 Score=34.95 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=30.0
Q ss_pred cCcCchhhhhhh--hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh
Q 021597 113 WKLPDMMFATRR--SLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (310)
Q Consensus 113 ws~SDlMfVTKR--nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~v 158 (310)
|.++|.-|...+ ..-+|+..+..+++|+.+-+..+|.-|.+=.+++
T Consensus 12 i~~~~~~~L~~~i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l 59 (683)
T PF08580_consen 12 ILLPIALYLSESIPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREGL 59 (683)
T ss_pred cccchHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444455555544 2334555666789999999999999887654443
No 256
>PHA01750 hypothetical protein
Probab=51.62 E-value=31 Score=27.58 Aligned_cols=32 Identities=16% Similarity=0.433 Sum_probs=23.0
Q ss_pred chhhhhhhhHHHHHHHHH-HhHHHHHHHHHHHH
Q 021597 117 DMMFATRRSLSDACNSVA-RQLEDVYSSISAAQ 148 (310)
Q Consensus 117 DlMfVTKRnms~Av~sv~-KqLeqVs~sL~~aK 148 (310)
.+-|--|..+.||+..+- +-|+++-..|+++|
T Consensus 23 qlYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 23 QLYLKIKQALKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567889999998754 45777777777766
No 257
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=51.58 E-value=1.2e+02 Score=23.80 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=16.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH
Q 021597 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN 163 (310)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~kld 163 (310)
.++...+...+.++.+....+|.++....+.+-.-|+
T Consensus 20 ~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~ 56 (127)
T smart00502 20 EDALKQLISIIQEVEENAADVEAQIKAAFDELRNALN 56 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 258
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=51.44 E-value=39 Score=33.63 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 021597 191 QSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~k 210 (310)
+.....+..|+.||+.+|..
T Consensus 168 ~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 168 KELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333444445555555543
No 259
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=51.42 E-value=2.2e+02 Score=26.96 Aligned_cols=12 Identities=0% Similarity=0.058 Sum_probs=5.0
Q ss_pred hhhhhhhHHHHH
Q 021597 119 MFATRRSLSDAC 130 (310)
Q Consensus 119 MfVTKRnms~Av 130 (310)
|+-+|-.+-+.+
T Consensus 13 lek~k~~i~~e~ 24 (230)
T PF10146_consen 13 LEKLKNEILQEV 24 (230)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 260
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=51.19 E-value=48 Score=29.40 Aligned_cols=58 Identities=5% Similarity=0.083 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 021597 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (310)
-+..++++-..+++.||.+|.+-+ ...++++|-....++.++-..+..+...+...+.
T Consensus 4 w~~~~~~~~~~~~~~Le~elk~~~--~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~ 61 (177)
T PF10602_consen 4 WIEETKAKNAEELEKLEAELKDAK--SNLGKESIRMALEDLADHYCKIGDLEEALKAYSR 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467888899999999999999875 6778888888888888888888777777666554
No 261
>PRK11519 tyrosine kinase; Provisional
Probab=51.16 E-value=2.7e+02 Score=29.96 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLS 152 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLs 152 (310)
..++..=+.+||+++...|..+.+.|.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~ 291 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLN 291 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666677777777777776665554
No 262
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=51.00 E-value=63 Score=30.07 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=45.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhh---hhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 021597 133 VARQLEDVYSSISAAQRQLSSKITSV---DRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (310)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~v---D~klde~~eis~~i~~eV~~v~~dl~~ig~ 188 (310)
+.-.++|+..++..+|+-|..-|+.+ |+|||.+..++..+.-++.-++-....++.
T Consensus 127 ~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~ 185 (190)
T COG5143 127 IQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNL 185 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44458888889999999999888887 889999999999999888777766555544
No 263
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=50.90 E-value=2.8e+02 Score=28.00 Aligned_cols=24 Identities=4% Similarity=0.282 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAA 147 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~a 147 (310)
..|++-.+++++|-||=..++.-+
T Consensus 206 ~ema~lL~sLt~HfDqC~~a~~~~ 229 (412)
T PF04108_consen 206 QEMASLLESLTNHFDQCVTAVRHT 229 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888888888888877777633
No 264
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.84 E-value=1.4e+02 Score=31.32 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=20.9
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
++.+=.++..+.++...+.+.++..+..|..+++.+
T Consensus 107 v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 107 VQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333334445555666666666666666666666543
No 265
>PF05802 EspB: Enterobacterial EspB protein
Probab=50.43 E-value=1.8e+02 Score=29.00 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=52.5
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
+.+.++..=+.+++.+++..++-++|-.--+++.+.++.+.+||...-+....|-..+..-..
T Consensus 148 q~kgaqkyaEsl~d~~~KAseiMQQim~t~T~Aa~r~s~v~ddv~~~a~~as~~ae~~A~Aa~ 210 (317)
T PF05802_consen 148 QQKGAQKYAESLADAMEKASEIMQQIMATATKAASRTSGVADDVATSAQKASQLAEQAADAAQ 210 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999999999999999999999999999999999999877666666555544433
No 266
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=50.38 E-value=2e+02 Score=26.30 Aligned_cols=69 Identities=7% Similarity=0.148 Sum_probs=52.9
Q ss_pred ecccCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 021597 110 WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (310)
Q Consensus 110 WKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~D 189 (310)
+.+|+.+. ..|.++...++..+|..+.++..+-.. .++.-+-|.|....+..++.=+. ++++.+...|
T Consensus 58 f~~ls~~E------~~l~~~le~~g~~~d~~~~~~~~~~~~----~~~f~e~LkEy~~ya~slk~vlk--~r~~~q~~~e 125 (201)
T cd07622 58 FSEWSAIE------KEMGDGLQKAGHYMDSYAASIDNGLED----EELIADQLKEYLFFADSLRAVCK--KHELLQYDLE 125 (201)
T ss_pred HHHHHhcc------hhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 46788888 699999999999999988888875544 46777888888888888887433 6666666655
Q ss_pred H
Q 021597 190 F 190 (310)
Q Consensus 190 v 190 (310)
.
T Consensus 126 ~ 126 (201)
T cd07622 126 K 126 (201)
T ss_pred H
Confidence 4
No 267
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=50.37 E-value=54 Score=25.11 Aligned_cols=22 Identities=5% Similarity=0.149 Sum_probs=9.4
Q ss_pred HHHHHHHhhhchhhhhhHHHHH
Q 021597 172 TQEEVTILRGRSKLIGDEFQSV 193 (310)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v 193 (310)
+++++..+..++.++..+++.+
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~l 25 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKL 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333
No 268
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=50.33 E-value=85 Score=31.21 Aligned_cols=51 Identities=22% Similarity=0.527 Sum_probs=26.8
Q ss_pred hhHHHHHHhhhheeeEE-----ecccCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 021597 93 KYGVIVVIVAVGYGYVW-----WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAA 147 (310)
Q Consensus 93 ~y~l~a~iGavGYgYmw-----WKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~a 147 (310)
.+|++.++.-+|||-+- |+.-.- |-..+.+++.......++++.-+.+...
T Consensus 167 ~~Gl~l~i~~~g~Glv~iP~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (471)
T PF04791_consen 167 FWGLFLFIILLGYGLVAIPRDLWRSSNS----YFRAAKLEDEAAEAKEKLDDIIEKLRRL 222 (471)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhccc----cchhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 46665566678888642 553322 4444444444455555555554444444
No 269
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=50.25 E-value=2.4e+02 Score=27.53 Aligned_cols=78 Identities=6% Similarity=0.160 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 021597 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (310)
Q Consensus 142 ~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~ 219 (310)
+.|....+.|.+.+..+...-++..+-.+..++|..++...-.++-.+...++.-...++.+.++++..-+++..=+.
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666667777776666666555555555655555554455555555554455555555555544444444333
No 270
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=50.20 E-value=93 Score=22.31 Aligned_cols=41 Identities=12% Similarity=0.277 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 170 ~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
..|...|.+++.=...|+.+|+.=..++..+|..++....+
T Consensus 7 ~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~ 47 (63)
T PF05739_consen 7 DELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH
Confidence 33444444444444444444544444444444444444333
No 271
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=49.93 E-value=63 Score=31.43 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=7.8
Q ss_pred cchhhhhhhHHHHHHH
Q 021597 28 SSVSDAVGGTLKIVSK 43 (310)
Q Consensus 28 sdv~~~lsg~lk~l~k 43 (310)
||+ ..+|-++|-+.=
T Consensus 17 sDv-E~iSkalQr~aL 31 (290)
T COG4026 17 SDV-EVISKALQRLAL 31 (290)
T ss_pred chH-HHHHHHHHHhhh
Confidence 444 455566665543
No 272
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=49.71 E-value=2e+02 Score=25.89 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=29.8
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 021597 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (310)
..+++..++..+......+..++.-+..|+.||..+..+.+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777777777777776655
No 273
>COG1511 Predicted membrane protein [Function unknown]
Probab=49.54 E-value=1.9e+02 Score=31.66 Aligned_cols=102 Identities=12% Similarity=0.214 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhHHHHHHHH-H-HHHH-------HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 021597 125 SLSDACNSVARQLEDVYSSI-S-AAQR-------QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL-~-~aKr-------hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~ 195 (310)
.++++.+.+++++-..+... . .+=+ .....+..+.+-+++.....+.+.+....+..-...+.+++..+..
T Consensus 148 ~~~~l~~~is~~~t~t~~~~v~~~~i~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 227 (780)
T COG1511 148 AADKLLNEISKELTETYTKVVAFPTIYDLGGGVKGAADGAEKLKDGTDEASNGNKKLSDLLNTLNNSSATFSDGLNALTS 227 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHHHhh
Confidence 44555555555555544444 1 1111 1122333444444444444444444333333333333334444444
Q ss_pred HHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 021597 196 IVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (310)
Q Consensus 196 ~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (310)
-+..+.+++..+....+.-..|+..|-+.++
T Consensus 228 ~~~~l~d~l~~i~~~~~~~~~~~~~l~~~~~ 258 (780)
T COG1511 228 GLTTLTDGLNQLDSGLGTLAAGIGELKQGAE 258 (780)
T ss_pred hhHHHhhhHHHHHhhhhHHhhhhHHHHHHHH
Confidence 4444444444444333333333333333333
No 274
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=49.53 E-value=2.2e+02 Score=27.12 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH-HHHHHhhhchhhhhhHHHHHHHH----HHH
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ-EEVTILRGRSKLIGDEFQSVRDI----VQT 199 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~-~eV~~v~~dl~~ig~Dv~~v~~~----V~~ 199 (310)
=|.++++.|-||+.++-..+++ .+.+..+|-+|=|+......... +|-..++..|.++.+++..|++- |.-
T Consensus 15 ~i~~~i~~vEkhFg~lC~~~a~----ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa~v~R 90 (219)
T PF06730_consen 15 FIQDRITNVEKHFGELCQLFAA----YTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQAEVER 90 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888887776 45566777777775544433333 34456777899999999888754 555
Q ss_pred HHHHH
Q 021597 200 LESKL 204 (310)
Q Consensus 200 Le~Ki 204 (310)
||.|+
T Consensus 91 lE~KV 95 (219)
T PF06730_consen 91 LEAKV 95 (219)
T ss_pred HHHHh
Confidence 55555
No 275
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.30 E-value=29 Score=29.18 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=49.0
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 021597 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (310)
|+.|-.+|..+..++.+..+=.+.++++|.++-+.=.++.-+-+.++..+..++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999999988888888888899999999988876
No 276
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=49.10 E-value=1.7e+02 Score=30.83 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=17.8
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 021597 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (310)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~e 167 (310)
++|++-++-+.++|+-+.+|++.++.|++++..
T Consensus 364 ~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~k 396 (493)
T KOG0804|consen 364 DSLKQESSDLEAEKKIVERKLQQLQTKLKKCQK 396 (493)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555665555555555555555433
No 277
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=49.09 E-value=53 Score=25.09 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=20.2
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 021597 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (310)
Q Consensus 118 lMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqR 154 (310)
++|+.+.+ .+-...+....+.+.+.+.....+...+
T Consensus 17 lL~aP~sG-~e~R~~l~~~~~~~~~~~~~~~~~~~~~ 52 (74)
T PF12732_consen 17 LLFAPKSG-KETREKLKDKAEDLKDKAKDLYEEAKEK 52 (74)
T ss_pred HHhCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666544 4555566666666666655555554444
No 278
>PRK10869 recombination and repair protein; Provisional
Probab=49.06 E-value=1.1e+02 Score=31.88 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=58.2
Q ss_pred CcCchhhhhhhhHHHH------HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021597 114 KLPDMMFATRRSLSDA------CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (310)
Q Consensus 114 s~SDlMfVTKRnms~A------v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig 187 (310)
+.-|.+.-..+.|... ...+...|++++..|..+.+.|..-.+.++-.=++..++ ++-+..++.=-...|
T Consensus 241 ~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~i----e~Rl~~l~~L~rKyg 316 (553)
T PRK10869 241 NILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAEL----EQRLSKQISLARKHH 316 (553)
T ss_pred cHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH----HHHHHHHHHHHHHhC
Confidence 3455566666666544 355777788888888888888888777665433333222 223333333333345
Q ss_pred hHHHHHHHHHHHHHHHHHH----------hhhhhhHHhHHHHHHHH
Q 021597 188 DEFQSVRDIVQTLESKLIE----------IEGKQDITTLGVKKLCD 223 (310)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~----------ie~kQd~Tn~GV~~LC~ 223 (310)
.+++.|-..-..++.+++. ++...+-.-.-+..+|+
T Consensus 317 ~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~ 362 (553)
T PRK10869 317 VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQ 362 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555544 44444444444555544
No 279
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=48.96 E-value=3.6e+02 Score=28.78 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhcC
Q 021597 61 LLAEVSSVQQELSHV 75 (310)
Q Consensus 61 L~aQV~~LaqElr~L 75 (310)
|..|+..|++++++.
T Consensus 199 L~~ql~~l~~~l~~a 213 (754)
T TIGR01005 199 LAPEIADLSKQSRDA 213 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888888877665
No 280
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=48.86 E-value=3.3e+02 Score=28.33 Aligned_cols=73 Identities=7% Similarity=0.137 Sum_probs=52.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh
Q 021597 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (310)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~ 227 (310)
+..+-..|++...=+...+.+...++..+..+..+++..+..+.+.|.||.....--+.+...--.--.-+.-
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~ 439 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKA 439 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666677777888888888899999999999999999999887665555555544443333333
No 281
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=48.79 E-value=96 Score=30.04 Aligned_cols=93 Identities=12% Similarity=0.221 Sum_probs=69.7
Q ss_pred hHHHHHHhhhheeeEEecc-----cCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---HhhhhhhHHHH
Q 021597 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKI 165 (310)
Q Consensus 94 y~l~a~iGavGYgYmwWKG-----ws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqR---I~~vD~klde~ 165 (310)
.++++++|++-+||++=.| |.++-+|-|-=-.+ ++.-++.-+..+..++...|+-+..+ -+...+-++..
T Consensus 5 iGli~~~~~v~~g~~l~Gg~~~~l~~~~~~lIV~Ggtl--ga~lis~p~~~~~~~~~~~~~~f~~~~~~~~~~~~li~~l 82 (282)
T TIGR03818 5 IGLVVVLGCVFGGYLLAGGHLAALWQPAELLIIGGAAI--GAFIIANPPKVLKETLKGLPKVFKGSKYGKADYLDLLSLL 82 (282)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Confidence 4567788888888887444 66777777765544 34457778889999999999988777 45667888888
Q ss_pred HHHHHHHHHH-HHHhhhchhhhhh
Q 021597 166 VEISQATQEE-VTILRGRSKLIGD 188 (310)
Q Consensus 166 ~eis~~i~~e-V~~v~~dl~~ig~ 188 (310)
.+++...|++ +-.+..+++++.+
T Consensus 83 ~~la~~aR~~GllaLE~~v~~~~~ 106 (282)
T TIGR03818 83 YELLRKARREGLMAIESHIENPEE 106 (282)
T ss_pred HHHHHHHHhcCHHHHHhhhcCccc
Confidence 8999999887 6666666666664
No 282
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=48.79 E-value=3.3e+02 Score=28.20 Aligned_cols=67 Identities=7% Similarity=0.170 Sum_probs=42.2
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhh-hHHHHHHHHHHHHHHHHHhhhchhhh
Q 021597 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR-DVNKIVEISQATQEEVTILRGRSKLI 186 (310)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~-klde~~eis~~i~~eV~~v~~dl~~i 186 (310)
=--|..|+.-+..+-+.+|.+.+.+...|+...+|==+... +|+.+..-......++.+++.-+..+
T Consensus 205 ~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~ 272 (424)
T PF03915_consen 205 ESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTE 272 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578899999999999999999999999999887433322 23333333333344444444444333
No 283
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=48.73 E-value=2e+02 Score=25.81 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 021597 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~D 189 (310)
.|..=++++..-|+.-...-++..++-+..++++.++|....+|+.|
T Consensus 38 iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 38 IFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555555555555
No 284
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=48.67 E-value=42 Score=27.57 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=14.5
Q ss_pred hhhhhhhHHHHHHHHHHhHHHH
Q 021597 119 MFATRRSLSDACNSVARQLEDV 140 (310)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqV 140 (310)
|||- +...+|...+.+.++..
T Consensus 59 vlv~-~~~~e~~~~l~~r~e~i 79 (110)
T TIGR02338 59 LLVK-TDKEEAIQELKEKKETL 79 (110)
T ss_pred hhhe-ecHHHHHHHHHHHHHHH
Confidence 6765 66777777777766655
No 285
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=48.65 E-value=2.3e+02 Score=32.24 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHH---------------------------------------------------
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTI--------------------------------------------------- 178 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~--------------------------------------------------- 178 (310)
+|++|++++...+|+..++-....+-|.+
T Consensus 369 el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIvlHr~~~DPdf~y 448 (1102)
T KOG1924|consen 369 ELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDFKY 448 (1102)
T ss_pred HHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCcch
Q ss_pred ---hhhchhhhhhHH------HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhccCCCccceeccccCcccccc
Q 021597 179 ---LRGRSKLIGDEF------QSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTL 249 (310)
Q Consensus 179 ---v~~dl~~ig~Dv------~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~~~s~s~~~al 249 (310)
..-|++.+-+++ +.+.+-...|+.|++.-...-.-+.+-....-+-+..++....+---|..... .--.+
T Consensus 449 r~~l~id~~~liD~~vdkak~eeseqkA~e~~kk~~ke~ta~qe~qael~k~e~Ki~~l~ae~~al~s~~~~~~-~~~~i 527 (1102)
T KOG1924|consen 449 RFRLDIDLTELIDKMVDKAKAEESEQKAAELEKKFDKELTARQEAQAELQKHEEKIKLLEAEKQALSSPSQLLP-IDGGI 527 (1102)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCchhhhhccCcccCCC-CCCCC
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021597 250 ELPGITPSSRSGSLHPLPLEPPSPSXXX 277 (310)
Q Consensus 250 e~~~~~p~sr~~slpp~~~e~~sps~~~ 277 (310)
-.||..|..+-..-||+|..||=|.-+.
T Consensus 528 P~PP~~pp~gG~g~pppPppPPlpggag 555 (1102)
T KOG1924|consen 528 PPPPPLPPTGGTGPPPPPPPPPLPGGAG 555 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 286
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=48.59 E-value=1.9e+02 Score=27.97 Aligned_cols=44 Identities=14% Similarity=0.347 Sum_probs=28.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 021597 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde 164 (310)
+.|..+-.+-..++.++.+.++.|...++.....|+..-++++.
T Consensus 127 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ 170 (322)
T TIGR02492 127 ALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINS 170 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777776666655444333333
No 287
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=48.55 E-value=52 Score=25.72 Aligned_cols=14 Identities=14% Similarity=0.408 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHhc
Q 021597 61 LLAEVSSVQQELSH 74 (310)
Q Consensus 61 L~aQV~~LaqElr~ 74 (310)
+.+|+..|..+++.
T Consensus 17 ~~~q~~~l~~~~~~ 30 (106)
T PF01920_consen 17 LEQQIQQLERQLRE 30 (106)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 288
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=48.51 E-value=1.7e+02 Score=24.92 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 021597 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (310)
Q Consensus 158 vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (310)
|.....+.-+-++.|..|.-.++..+..+...-...-.++..+..+|.+|..=|+.+
T Consensus 38 ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDveNWa 94 (121)
T PF06320_consen 38 LNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDVENWA 94 (121)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 334444455555666666666666666666666666666666666666665544443
No 289
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=48.43 E-value=1.7e+02 Score=24.86 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=41.9
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 021597 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (310)
Q Consensus 115 ~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ 166 (310)
|.|-+--.|+.+..-+..+.+.|+.+.+++..-...+.++|...|+.+|...
T Consensus 3 ~~~~l~~~~~el~~m~~~~~~ml~~~~~~~~~~d~~~~~~i~~~e~~id~l~ 54 (212)
T TIGR02135 3 FDEELKELREELLEMGGLVEEQLEDAVRALTEKDRELARKVIEDDDQINALE 54 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHChHHHHHHH
Confidence 3445566788888888899999999999998777788888888888887765
No 290
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=48.37 E-value=2.6e+02 Score=26.90 Aligned_cols=92 Identities=10% Similarity=0.138 Sum_probs=61.7
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHH-HHHHHHHhHhhhhhhHHHHHHHHHHHHHHH------------HHhhhch
Q 021597 117 DMMFATRRSLSDACNSVARQLEDVYSSISA-AQRQLSSKITSVDRDVNKIVEISQATQEEV------------TILRGRS 183 (310)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~-aKrhLsqRI~~vD~klde~~eis~~i~~eV------------~~v~~dl 183 (310)
.+|+..=.+..+.+..+.++++++.+.|-. .+++.-.||-.+.+.+=.........++-+ .+.+.-+
T Consensus 143 ~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l 222 (322)
T COG0598 143 ALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYL 222 (322)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHH
Confidence 466677788999999999999999976655 444577777777776655444443333222 2344445
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 184 KLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 184 ~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
..+.+|+.++..++..+..++..+.
T Consensus 223 ~dv~~~~~~~~~~~~~~~~~l~~l~ 247 (322)
T COG0598 223 RDVLDHLTQLIEMLEALRERLSSLL 247 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777777654
No 291
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=48.14 E-value=52 Score=28.78 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=18.7
Q ss_pred hhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 180 ~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
.++|.++-.-++.+...+.-||.||++|.
T Consensus 20 E~kL~~~e~~Lq~~E~~l~iLEaKL~SIp 48 (148)
T PF10152_consen 20 EEKLSDMEQRLQRLEATLNILEAKLSSIP 48 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445555556666666777788888776
No 292
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=48.13 E-value=2.1e+02 Score=25.92 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 021597 184 KLIGDEFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 184 ~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (310)
....++++.++..-..|..+|.+
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455666666666666666554
No 293
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=48.05 E-value=1.4e+02 Score=30.69 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=35.7
Q ss_pred HHhhhheeeEEecccCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHH--HHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021597 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ--RQLSSKITSVDRDVNKIVEISQATQEEV 176 (310)
Q Consensus 99 ~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aK--rhLsqRI~~vD~klde~~eis~~i~~eV 176 (310)
++|.=+-||-||++- .-..+.=...+.+|++....+....| +.|..+|.....+++.-.-..+.-..++
T Consensus 43 aLgLGagg~~f~QqQ---------~~~~~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~el~~l~~~~~~~~~ql 113 (391)
T COG2959 43 ALGLGAGGYYFGQQQ---------NVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQL 113 (391)
T ss_pred HHHhchhHHHHHHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333333346677764 12233334445555555555555555 5555555554444444222222223334
Q ss_pred HHhhhchhhh
Q 021597 177 TILRGRSKLI 186 (310)
Q Consensus 177 ~~v~~dl~~i 186 (310)
.+++..+..|
T Consensus 114 ~e~Q~~v~~i 123 (391)
T COG2959 114 SELQKKVATI 123 (391)
T ss_pred HHHHHHHHHh
Confidence 4444433333
No 294
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=47.98 E-value=2e+02 Score=26.33 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 021597 188 DEFQSVRDIVQTLESKLIEIEGKQDIT 214 (310)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (310)
.|+.+-...+.-+|.|+.++|..-+..
T Consensus 159 ~~~~~a~~~fer~e~ki~~~ea~aea~ 185 (219)
T TIGR02977 159 GRSDEAMARFEQYERRVDELEAQAESY 185 (219)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666777788888887665543
No 295
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=47.91 E-value=87 Score=30.74 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=37.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021597 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (310)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (310)
.++..+...|+++-......=.++++||++-..+|+...+=+...+..|..+++-
T Consensus 18 Eti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs 72 (297)
T PF11945_consen 18 ETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGS 72 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4556666677777777777777777777777777776666666666666666554
No 296
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=47.85 E-value=48 Score=27.79 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=8.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021597 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (310)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~i 186 (310)
+..+++++++...=...++++|..++.++.+.
T Consensus 64 L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~ 95 (133)
T PF06148_consen 64 LVGMDEKIEELRKPLSQFREEVESVRDELDNT 95 (133)
T ss_dssp ----------HHHHHHHHHHHHHHHHHS-STT
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444433333
No 297
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=47.70 E-value=3.6e+02 Score=28.37 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=16.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 021597 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (310)
Q Consensus 134 ~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~ 165 (310)
...|+.+.+....+.++|.++++.+...+.+.
T Consensus 91 ~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 122 (779)
T PRK11091 91 VAKLEEMRERDLELNVQLKDNIAQLNQEIAER 122 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555554443
No 298
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=47.54 E-value=8.7 Score=29.01 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=16.5
Q ss_pred CCCCCcchhHHhhhcccccc
Q 021597 279 XXXIPMDLIRLVDFLNTNVI 298 (310)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~ 298 (310)
.|..-.|+.++|||||-|.-
T Consensus 9 ~~~~~~dlYKvVDfLNktLK 28 (52)
T PF14084_consen 9 EFEYNDDLYKVVDFLNKTLK 28 (52)
T ss_pred EecCCccHHHHHHHHhhhhh
Confidence 36667799999999999864
No 299
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=47.53 E-value=38 Score=35.46 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHH--HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 160 RDVNKIVEISQAT--QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 160 ~klde~~eis~~i--~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
..+|++.+.++.+ ++...++...|+.+..+++.+......+|.||+.+|..
T Consensus 60 ~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE 112 (475)
T PRK13729 60 TTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQD 112 (475)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3333334444333 34467777777777777777777777777777766543
No 300
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=47.38 E-value=1.6e+02 Score=26.91 Aligned_cols=82 Identities=11% Similarity=0.261 Sum_probs=54.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhH-----HHHHHHHHHHHHHHHHhhhchhhhhhH----HHHHHHHHHHHHHH
Q 021597 133 VARQLEDVYSSISAAQRQLSSKITSVDRDV-----NKIVEISQATQEEVTILRGRSKLIGDE----FQSVRDIVQTLESK 203 (310)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~vD~kl-----de~~eis~~i~~eV~~v~~dl~~ig~D----v~~v~~~V~~Le~K 203 (310)
+-++|-.--..|..||.+|.+.|+.-..-+ ..+.-.-...-..|+++...|+.|..| +..+++.....+.=
T Consensus 5 l~~kL~D~D~~IqqaK~~L~~ei~kA~q~~~snnt~~mqsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~eLq~tr~~I~eF 84 (157)
T PF04778_consen 5 LDKKLTDNDNEIQQAKTELDKEIQKANQAVASNNTASMQSAKSSLDAKITEITKKLEKFNKDKEAKFNELQQTRKQIDEF 84 (157)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 334455555667788888888887765544 333333445556788888888888765 55666666666666
Q ss_pred HHHhhhhhhHH
Q 021597 204 LIEIEGKQDIT 214 (310)
Q Consensus 204 i~~ie~kQd~T 214 (310)
|.....+++|+
T Consensus 85 i~~~K~NpnY~ 95 (157)
T PF04778_consen 85 INKNKNNPNYA 95 (157)
T ss_pred HhhccCCccHH
Confidence 66777777777
No 301
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.09 E-value=84 Score=29.76 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=40.8
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 021597 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (310)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (310)
.+|+.++...++......-+++.++..++.++.+++++++..+ ..|..+...|.---.-+..
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~-------~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQ-------YQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4788777777777766666777777777777666666666655 6666666666543333333
No 302
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=46.89 E-value=2.7e+02 Score=29.71 Aligned_cols=97 Identities=16% Similarity=0.242 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH----------H------HHHHHhhhchhhh
Q 021597 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT----------Q------EEVTILRGRSKLI 186 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i----------~------~eV~~v~~dl~~i 186 (310)
+|-.-.-+..+-+-|+.+++.+.. ......+|.++++.+|...+-.+.- + .+.-+...|+|+|
T Consensus 337 ~rEvl~~~d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE~I 415 (533)
T COG1283 337 AREVLRLGDSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLEHI 415 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHHHH
Confidence 444445566677778888888887 7777888888888888765433211 1 2345566677777
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 021597 187 GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (310)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (310)
|+-++.+ +.-.+. .++.+-.++-.|..-||++..
T Consensus 416 gDiie~l---~~~~~k---k~~~~~~fse~~~~el~~l~~ 449 (533)
T COG1283 416 GDIIERL---LELADK---KIANGRAFSEDGLEELDALFA 449 (533)
T ss_pred HHHHHHH---HHHHHH---HHhcCCCCCHHHHHHHHHHHH
Confidence 7766663 233333 345667777788888877554
No 303
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=46.45 E-value=8.1 Score=40.09 Aligned_cols=18 Identities=56% Similarity=0.916 Sum_probs=15.2
Q ss_pred eeeEcCcccceeec----cCCC
Q 021597 9 TFLVGAGILTSVLA----KEGR 26 (310)
Q Consensus 9 ~ILvGAG~~GSvl~----knGk 26 (310)
+|+||||++|+.|+ |+||
T Consensus 48 vIIVGAGV~GsaLa~~L~kdGR 69 (509)
T KOG1298|consen 48 VIIVGAGVAGSALAYALAKDGR 69 (509)
T ss_pred EEEECCcchHHHHHHHHhhCCc
Confidence 79999999998654 7887
No 304
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=46.27 E-value=34 Score=34.07 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=14.1
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHH
Q 021597 182 RSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 182 dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
.+......+..+.+-+..||+++-
T Consensus 166 ~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 166 AIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333344455666666777777665
No 305
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.24 E-value=2.8e+02 Score=26.63 Aligned_cols=31 Identities=6% Similarity=0.234 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqR 154 (310)
..|++..+.++..+++.+.+|...++|+.++
T Consensus 103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~ 133 (240)
T cd07667 103 GELAEPLEGVSACIGNCSTALEELTEDMTED 133 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6899999999999999999999999998774
No 306
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=46.10 E-value=1.4e+02 Score=23.23 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHH
Q 021597 143 SISAAQRQLSSKITSVDRDVNKIV 166 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~ 166 (310)
.+...-..+.++|..+...+.+..
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~ 32 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELE 32 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555443
No 307
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=45.95 E-value=1.1e+02 Score=21.99 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhHhhh
Q 021597 144 ISAAQRQLSSKITSV 158 (310)
Q Consensus 144 L~~aKrhLsqRI~~v 158 (310)
|...-+.|...++.+
T Consensus 23 l~~~~~~l~~~~~~l 37 (86)
T PF06013_consen 23 LQSQLQQLESSIDSL 37 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 308
>PRK04098 sec-independent translocase; Provisional
Probab=45.92 E-value=2.3e+02 Score=25.76 Aligned_cols=49 Identities=10% Similarity=0.373 Sum_probs=26.3
Q ss_pred hhhhHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhHhhhhh--hHHHHHHHHH
Q 021597 122 TRRSLSDACNSVARQ--LEDVYSSISAAQRQLSSKITSVDR--DVNKIVEISQ 170 (310)
Q Consensus 122 TKRnms~Av~sv~Kq--LeqVs~sL~~aKrhLsqRI~~vD~--klde~~eis~ 170 (310)
-||.++++-+.+-.. ++.+-+.+...|+.|.+-.++|.. .+|+..++..
T Consensus 39 ~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~~~~~eel~~~~~ 91 (158)
T PRK04098 39 VKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLKI 91 (158)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhh
Confidence 344445544444442 234455555666777776666665 4555554443
No 309
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=45.80 E-value=2.3e+02 Score=27.33 Aligned_cols=85 Identities=11% Similarity=0.206 Sum_probs=51.7
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH---h--HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh-------hhH
Q 021597 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSS---K--ITSVDRDVNKIVEISQATQEEVTILRGRSKLI-------GDE 189 (310)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsq---R--I~~vD~klde~~eis~~i~~eV~~v~~dl~~i-------g~D 189 (310)
.++.-.+|+.-+.+||++....|..+.+.|.. + +-.++.......+....++.+..+++..+... .-+
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 45556789999999999999999999877754 1 11122223334445555556666655555444 234
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021597 190 FQSVRDIVQTLESKLIE 206 (310)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ 206 (310)
+..++.-+..|+.+|..
T Consensus 244 v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDE 260 (362)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55555555566555554
No 310
>PLN03223 Polycystin cation channel protein; Provisional
Probab=45.66 E-value=1.1e+02 Score=36.36 Aligned_cols=91 Identities=26% Similarity=0.386 Sum_probs=60.2
Q ss_pred hhhhHH--HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHH
Q 021597 122 TRRSLS--DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (310)
Q Consensus 122 TKRnms--~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~ 199 (310)
.||.|. ||-+.++.-|+||. .|+-++..|...|+.|.-++|-++.+++.-..+=+ + ..-|..-...|+.-=..
T Consensus 767 ~~r~l~~~~~~~~l~~~~~~v~-~~~t~q~~~~~~~~~~~~~~~~~~~~a~~~~~d~~-~---~~~i~~g~~d~~~~~~~ 841 (1634)
T PLN03223 767 NRRRLQQTNAAATLTNILTQVG-TLSTTQTSLDTQIETLKTQQDRANQEAEAHHADNS-L---ETLINAGFTDIKAGQAA 841 (1634)
T ss_pred hhhhhhhcchHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccch-H---HHHHHhchhHHHhHHHH
Confidence 367665 67777777777775 47788888999999888888877666554332210 0 11222223445555567
Q ss_pred HHHHHHHhhhhhhHHhHH
Q 021597 200 LESKLIEIEGKQDITTLG 217 (310)
Q Consensus 200 Le~Ki~~ie~kQd~Tn~G 217 (310)
||.||++|-+||+.+...
T Consensus 842 ~~~~~~~il~kq~~al~~ 859 (1634)
T PLN03223 842 LEAKLDEILGKQQQALAA 859 (1634)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 889999999998876543
No 311
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=45.62 E-value=2.1e+02 Score=32.22 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLSS 153 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsq 153 (310)
+...+......+.++...+...+++|..
T Consensus 782 l~~~i~~~~~~~~~~~~~~~~~~~~l~~ 809 (1047)
T PRK10246 782 LEQLKQNLENQRQQAQTLVTQTAQALAQ 809 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555554
No 312
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=45.59 E-value=6.9 Score=33.46 Aligned_cols=66 Identities=9% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 021597 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (310)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~G 217 (310)
..+++.+..++++..+-.+.+..+|.+...+++++...+..+...|..|+..+..+..++..-..-
T Consensus 16 ~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~ 81 (138)
T PF06009_consen 16 LDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENL 81 (138)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777777777778888888888888888888888888888888888888776544333
No 313
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=45.33 E-value=3.8e+02 Score=28.25 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 021597 138 EDVYSSISAAQRQLS 152 (310)
Q Consensus 138 eqVs~sL~~aKrhLs 152 (310)
+++.+.++.++..+.
T Consensus 39 ~~~~~~~~~~~~~~~ 53 (475)
T PRK10361 39 EEMVAELSAAKQQIT 53 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 314
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=45.31 E-value=1.6e+02 Score=26.63 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=39.8
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHH
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV 218 (310)
++...|+.|+.+|.....+...+-+.-.++-.++..+|.=+..+=..=.+|+..|..+-..-+....+.
T Consensus 18 e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~ 86 (200)
T cd07624 18 KMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAAL 86 (200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777666665554443333334444444443333333333
No 315
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=45.21 E-value=1.6e+02 Score=23.59 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=42.2
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh---hhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI---GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i---g~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (310)
.-.+|-.+|.+.-+...-....+.+-+.+...+... |.|.+.+..-+..|-.+|..+|....-...-+..+|.
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555444444444444444444443333 3467777777777777777777777766666666653
No 316
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=45.18 E-value=2.4e+02 Score=25.71 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=28.9
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021597 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (310)
Q Consensus 116 SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsq 153 (310)
.+-|--.|+.+.+....+-+...+....|..+|+..-+
T Consensus 95 ~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~ 132 (236)
T cd07651 95 ASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEA 132 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888888888888888888877653
No 317
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=45.06 E-value=2.2e+02 Score=28.58 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=9.1
Q ss_pred CcccceeeccCCC
Q 021597 14 AGILTSVLAKEGR 26 (310)
Q Consensus 14 AG~~GSvl~knGk 26 (310)
+|++..|.+++|.
T Consensus 67 ~G~v~~i~V~eG~ 79 (457)
T TIGR01000 67 NNAIKENYLKENK 79 (457)
T ss_pred CcEEEEEEcCCCC
Confidence 3677777777774
No 318
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=45.04 E-value=2.4e+02 Score=28.49 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsq 153 (310)
.+++...+++=..|.+=++--..|.+|..+
T Consensus 202 ~~le~ema~lL~sLt~HfDqC~~a~~~~eg 231 (412)
T PF04108_consen 202 HSLEQEMASLLESLTNHFDQCVTAVRHTEG 231 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455555555555555555555555555544
No 319
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.63 E-value=96 Score=30.83 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=16.2
Q ss_pred eccccCcccccccCCCCCCCCCCCCCCCCC
Q 021597 238 QASRYTLSRTTLELPGITPSSRSGSLHPLP 267 (310)
Q Consensus 238 Q~~~s~s~~~ale~~~~~p~sr~~slpp~~ 267 (310)
++..+.+++|.-..+-++|..-+.-.+|.+
T Consensus 201 ~~p~~~p~ip~wqi~~~sp~~~~~~~~~~~ 230 (300)
T KOG2629|consen 201 VAPSSAPSIPSWQIQAESPHHSSNRMTSTD 230 (300)
T ss_pred CCcccCCCCchhhhccccchhhhccCCCCC
Confidence 333455666666666666654444445553
No 320
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=44.61 E-value=1.4e+02 Score=25.88 Aligned_cols=43 Identities=21% Similarity=0.092 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 021597 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 169 s~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
....++|+......++.-...+++++.-+..++..+.+.+.+-
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455555555555666667777777777777777766653
No 321
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=44.58 E-value=3.4e+02 Score=27.22 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=31.8
Q ss_pred hhhhhhHH---HHHHHHHHhHHHHHHHHHHHHHHHH--------------HhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021597 120 FATRRSLS---DACNSVARQLEDVYSSISAAQRQLS--------------SKITSVDRDVNKIVEISQATQEEVTILRGR 182 (310)
Q Consensus 120 fVTKRnms---~Av~sv~KqLeqVs~sL~~aKrhLs--------------qRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (310)
|-|..+|+ +..+.+.+.+.++.+.|..+.+... ..|..|-.++.+.++-++.++.-|.++=.|
T Consensus 14 fp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~d 93 (383)
T PF04100_consen 14 FPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRD 93 (383)
T ss_pred CCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 3445555555666666655544332 334444444555555555555545444444
Q ss_pred hh
Q 021597 183 SK 184 (310)
Q Consensus 183 l~ 184 (310)
++
T Consensus 94 Ik 95 (383)
T PF04100_consen 94 IK 95 (383)
T ss_pred HH
Confidence 33
No 322
>PRK09039 hypothetical protein; Validated
Probab=44.56 E-value=3.2e+02 Score=26.96 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=6.7
Q ss_pred CcchhhhhhhHH
Q 021597 27 LSSVSDAVGGTL 38 (310)
Q Consensus 27 Lsdv~~~lsg~l 38 (310)
-|-+.|.+++.|
T Consensus 16 wpg~vd~~~~ll 27 (343)
T PRK09039 16 WPGFVDALSTLL 27 (343)
T ss_pred CchHHHHHHHHH
Confidence 455556565554
No 323
>PLN02867 Probable galacturonosyltransferase
Probab=44.43 E-value=1e+02 Score=32.90 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 170 ~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
+++-.|++..+-|...+ +..++.|++.+|.++...
T Consensus 123 ~~~~~~~~~~~~d~~~~---~~kl~am~~~~e~~~~~~ 157 (535)
T PLN02867 123 NDLVKEMTSNRQDIKAF---AFRTKAMLLKMERKVQSA 157 (535)
T ss_pred HHHHHHHHhccchHHHH---HHHHHHHHHHHHHHHHHH
Confidence 33344444444444433 456777888888887654
No 324
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=44.39 E-value=1e+02 Score=31.07 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=46.3
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh---hhhH-HHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 021597 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDE-FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (310)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~---ig~D-v~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (310)
.+|-.+|.+.-++..-.+..+.+-+.+...+.. -+.| .+.+..-+..|..+|..+|.+......-+..++..+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555555555444445555554444444433 2345 677888888899999999998888877777765533
No 325
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=44.28 E-value=1.2e+02 Score=21.84 Aligned_cols=29 Identities=14% Similarity=0.377 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 021597 137 LEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (310)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~ 165 (310)
|+++...+....++|...++.+...++.+
T Consensus 9 l~~~a~~~~~~~~~l~~~~~~l~~~~~~l 37 (86)
T PF06013_consen 9 LRAAAQQLQAQADELQSQLQQLESSIDSL 37 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 326
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=44.27 E-value=50 Score=31.33 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=45.7
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH--------HHHHHhhhhhhHHhHHH
Q 021597 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE--------SKLIEIEGKQDITTLGV 218 (310)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le--------~Ki~~ie~kQd~Tn~GV 218 (310)
|-.+|.++|+.|...+..|..++..|.+.|-+++- ..++.-|..++ .+-..++..+-.||.-+
T Consensus 5 tle~Lk~qV~~L~~lV~KQs~lIskTGq~vlelQv---------~~~K~~~~~~~~~~~~~~~~~~~~~d~~D~aTNeDL 75 (216)
T PF07957_consen 5 TLEELKKQVDELQALVKKQSKLISKTGQQVLELQV---------KKQKRDVNSFDKSFWPKSSSKQAQIDMSDYATNEDL 75 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhcccccccccccCcCCCccccccccchhH
Confidence 45788899999999999999999999999877763 34444444444 34445555666666644
Q ss_pred HHH
Q 021597 219 KKL 221 (310)
Q Consensus 219 ~~L 221 (310)
--|
T Consensus 76 VQL 78 (216)
T PF07957_consen 76 VQL 78 (216)
T ss_pred HHH
Confidence 333
No 327
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=44.25 E-value=15 Score=29.25 Aligned_cols=44 Identities=14% Similarity=0.345 Sum_probs=31.8
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 021597 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (310)
Q Consensus 118 lMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde 164 (310)
+=|.||+..+. .++.+-++--+.|.+.=++|.+||+.|.+=||+
T Consensus 24 lHY~~k~~~~~---~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 24 LHYRSKRKTAA---SLSTDDQALLQELYAKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHHhhhccCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45778877664 355555666666777778899999999887764
No 328
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=44.22 E-value=1.8e+02 Score=24.56 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=31.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 021597 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
+..-+++.+|..+...|..-.+||..-|-.=-..|-.+..-.+.. +.-+..+..-+++++.-+.-|..+|.
T Consensus 26 ~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~-------~~~l~~v~~~v~~L~~s~~RL~~eV~ 96 (132)
T PF10392_consen 26 DSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEEL-------ESVLQAVRSSVESLQSSYERLRSEVI 96 (132)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555555544433333333332222222 23333344444444444444444443
No 329
>PRK01919 tatB sec-independent translocase; Provisional
Probab=44.21 E-value=1.7e+02 Score=26.96 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKI 155 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI 155 (310)
..|-.+...+++-+.++-..+...|.++..-+
T Consensus 23 ekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~ 54 (169)
T PRK01919 23 ERLPRVARTAGALFGRAQRYINDVKAEVSREI 54 (169)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888888888776554
No 330
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=44.20 E-value=3.2e+02 Score=26.80 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh----------hhchhhhhh
Q 021597 124 RSLSDACNSVARQLEDVYSSISAA-----QRQLSSKITSVDRDVNKIVEISQATQEEVTIL----------RGRSKLIGD 188 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~a-----KrhLsqRI~~vD~klde~~eis~~i~~eV~~v----------~~dl~~ig~ 188 (310)
...++..+.+.+.||+++..+-.. =+++-++|-++.+-+-+..++.-.++.-+.-+ +..+..+.+
T Consensus 142 d~~ad~lE~~~~~ld~ls~~if~~~~~~~~~~~l~~i~~l~~~~~~~r~~l~~~~r~l~~l~~~~~~~~~~~~~~~~~~~ 221 (316)
T PRK11085 142 EQLADEIENIYSDLEKLSRVIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQAREILR 221 (316)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHH
Confidence 345666667777777777666431 12333444444444444333332222222211 123344445
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021597 189 EFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ 206 (310)
|++++..-+..+.+++..
T Consensus 222 Di~~l~~~~~~~~~~~~~ 239 (316)
T PRK11085 222 DIESLLPHNESLFQKVNF 239 (316)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555444443
No 331
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.04 E-value=1.7e+02 Score=28.72 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHh
Q 021597 215 TLGVKKLCDRARE 227 (310)
Q Consensus 215 n~GV~~LC~f~~~ 227 (310)
+..+..||.+..-
T Consensus 267 ~~~l~~l~~~~~~ 279 (359)
T COG1463 267 NQALANLRPLATL 279 (359)
T ss_pred HHHHHHHHHHHHH
Confidence 3344445555443
No 332
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=44.03 E-value=24 Score=29.01 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=13.0
Q ss_pred HHHhhhheeeEEecccCc
Q 021597 98 VVIVAVGYGYVWWKGWKL 115 (310)
Q Consensus 98 a~iGavGYgYmwWKGws~ 115 (310)
+++.++=++|.|||-|+.
T Consensus 11 ~~v~~~i~~y~~~k~~ka 28 (87)
T PF10883_consen 11 GAVVALILAYLWWKVKKA 28 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566678999998853
No 333
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=43.76 E-value=1.9e+02 Score=28.14 Aligned_cols=76 Identities=12% Similarity=0.222 Sum_probs=47.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 021597 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (310)
++.++..=-.+|+.|..--..=..|-..+... -++.++-+.+++-+..++..++++...+.++..=...||.||..
T Consensus 126 aseit~~GA~LydlL~kE~~lr~~R~~a~~r~-~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 126 ASEITQRGASLYDLLGKEVELREERQRALARP-LELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred HHHHHHHHHHHHHHHhchHhHHHHHHHHHcCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555443322222233333333 34556888888888888888888888888888888888888863
No 334
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=43.58 E-value=1.3e+02 Score=35.55 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
++|+..+++..||.| +.+..+|-+..+-...|.+++.-...||+.+..|+..|..++..|+.+++.|.
T Consensus 1227 i~~l~~~~~~lr~~l----~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQL----QALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHH----HHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555443 34444455555555556677777778888888888888888888888888664
No 335
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.49 E-value=2.9e+02 Score=26.17 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~e 175 (310)
+-+=+-|.-+-.||.+--+++++-+.||-.|+..|+.++.-.-|-....++.
T Consensus 91 q~~~~lctR~Q~Hl~~cA~aVA~dQn~lv~r~K~v~~s~~tLf~~~~~~qk~ 142 (217)
T KOG4515|consen 91 QPFFRLCTRLQEHLAVCAKAVAADQNKLVARCKSVEASMITLFEETRAHQKQ 142 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455789999999999999999999999999999999998766655555554
No 336
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=43.38 E-value=1.6e+02 Score=26.87 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=50.4
Q ss_pred CcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHH-HHHHHHHHHHhhhchhhhhhHHHH
Q 021597 114 KLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI-SQATQEEVTILRGRSKLIGDEFQS 192 (310)
Q Consensus 114 s~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ei-s~~i~~eV~~v~~dl~~ig~Dv~~ 192 (310)
||.|.+=--|+.++++-+.+- -|+.=+.-|...=..+++.+.-+-.+..++-++ .+.+.++|.+++.-++..+.|+.-
T Consensus 62 ~~~~~~~g~kk~~~~~~eele-rLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~ 140 (157)
T COG3352 62 KVKIEIEGQKKQLQDIKEELE-RLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRE 140 (157)
T ss_pred cccccccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 355555556666666666653 355555555555556666666676666666666 666777777777777777766655
Q ss_pred HH
Q 021597 193 VR 194 (310)
Q Consensus 193 v~ 194 (310)
+.
T Consensus 141 l~ 142 (157)
T COG3352 141 LY 142 (157)
T ss_pred hc
Confidence 43
No 337
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=43.26 E-value=3.1e+02 Score=28.11 Aligned_cols=78 Identities=10% Similarity=0.300 Sum_probs=45.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH--------------hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH----
Q 021597 128 DACNSVARQLEDVYSSISAAQRQLSS--------------KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE---- 189 (310)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsq--------------RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~D---- 189 (310)
+.+..+-+...++.+++.+-|.++.+ |.++|++.++ +..+.=++|+..++.+|..+.+-
T Consensus 219 ~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlN---d~~elHq~Ei~~LKqeLa~~EEK~~Yq 295 (395)
T PF10267_consen 219 EELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLN---DLTELHQNEIYNLKQELASMEEKMAYQ 295 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33555555555666666666655444 4444444433 34445556666666666554433
Q ss_pred ----HHHHHHHHHHHHHHHHHhh
Q 021597 190 ----FQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 190 ----v~~v~~~V~~Le~Ki~~ie 208 (310)
...|++.++..-.||..||
T Consensus 296 s~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 296 SYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 3456677777778888888
No 338
>PLN02320 seryl-tRNA synthetase
Probab=43.20 E-value=1.4e+02 Score=31.52 Aligned_cols=92 Identities=14% Similarity=0.259 Sum_probs=47.5
Q ss_pred ecccCcCchhhhhhhhHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021597 110 WKGWKLPDMMFATRRSLSDACNSVARQ-----LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (310)
Q Consensus 110 WKGws~SDlMfVTKRnms~Av~sv~Kq-----LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (310)
||-. -|+=|. |.|-.....++.+- +|++- .+-..+|.+..+++.+. .+.++++++|+.. .-..+.+
T Consensus 63 ~~~m--lD~k~i-r~n~~~v~~~l~~R~~~~~vd~l~-~ld~~~r~~~~~~~~lr---~ern~~sk~i~~~--~~~~~~~ 133 (502)
T PLN02320 63 WKAA--IDFKWI-RDNKEAVAINIRNRNSNANLELVL-ELYENMLALQKEVERLR---AERNAVANKMKGK--LEPSERQ 133 (502)
T ss_pred cccc--cCHHHH-HhCHHHHHHHHHhcCCCcCHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh--hCCCCHH
Confidence 6643 455554 44555444444432 34442 24445566666666554 4556677777651 2223445
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 185 LIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
.+..++..+++-+..||.++..++.+
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~ 159 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555543
No 339
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=43.19 E-value=3.6e+02 Score=27.07 Aligned_cols=15 Identities=7% Similarity=0.268 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcC
Q 021597 61 LLAEVSSVQQELSHV 75 (310)
Q Consensus 61 L~aQV~~LaqElr~L 75 (310)
|..|+..+++++++.
T Consensus 166 l~~ql~~~~~~L~~a 180 (498)
T TIGR03007 166 IDEQIKTYEKKLEAA 180 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888887777765
No 340
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=43.11 E-value=4.8e+02 Score=32.24 Aligned_cols=45 Identities=13% Similarity=0.333 Sum_probs=19.5
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHH---HHHHHHHHHHHhHhhhhhhHH
Q 021597 119 MFATRRSLSDACNSVARQLEDVYS---SISAAQRQLSSKITSVDRDVN 163 (310)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~---sL~~aKrhLsqRI~~vD~kld 163 (310)
++.-|-.+..=+..+..+++...+ .+...++.+.+.++.+.+.++
T Consensus 899 ~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~ 946 (1930)
T KOG0161|consen 899 LRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLE 946 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433 333344444444444444444
No 341
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=43.10 E-value=1.2e+02 Score=28.40 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=38.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh--chhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRG--RSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~--dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
|-..|.++..|+...+.....+..|+.++.. .+++++.++++++..|.+.+.||..+-+
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555554 3467778888888888888888887753
No 342
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.56 E-value=1.2e+02 Score=27.69 Aligned_cols=80 Identities=15% Similarity=0.090 Sum_probs=45.5
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHH-HHHHHHHHHHhhhchhhhhhHHHHHHH
Q 021597 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI-SQATQEEVTILRGRSKLIGDEFQSVRD 195 (310)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ei-s~~i~~eV~~v~~dl~~ig~Dv~~v~~ 195 (310)
|-|--+|+.|++++..+++.|..++..=..+-+-|+.=+..+.+-.+...++ ..+-.++...+...|...-.++++++.
T Consensus 28 ~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~ 107 (198)
T cd07630 28 LKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSRYSESEKD 107 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3455678899999999998888776643222212222222222222222222 223345666677777777777777766
Q ss_pred H
Q 021597 196 I 196 (310)
Q Consensus 196 ~ 196 (310)
+
T Consensus 108 ~ 108 (198)
T cd07630 108 M 108 (198)
T ss_pred H
Confidence 5
No 343
>PF14182 YgaB: YgaB-like protein
Probab=42.52 E-value=1.9e+02 Score=23.68 Aligned_cols=47 Identities=13% Similarity=0.316 Sum_probs=33.0
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHH-----HHHHhhhchhhhhhHHHHHHHHHH
Q 021597 152 SSKITSVDRDVNKIVEISQATQE-----EVTILRGRSKLIGDEFQSVRDIVQ 198 (310)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~-----eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (310)
.-++=.|-..||-|.+|-++.++ +...++..+.+...+++.||.++.
T Consensus 13 MD~LL~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe 64 (79)
T PF14182_consen 13 MDKLLFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFE 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888888877653 366677777777777777776654
No 344
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=42.45 E-value=1.3e+02 Score=32.16 Aligned_cols=99 Identities=15% Similarity=0.248 Sum_probs=54.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH----------hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH---HH
Q 021597 132 SVARQLEDVYSSISAAQRQLSS----------KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI---VQ 198 (310)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsq----------RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~---V~ 198 (310)
.+.+.|+..+..|..+..+|.. |++.+..+|.....+.+--.-.+.++-.-..++..+++.+... ..
T Consensus 266 ~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~ 345 (557)
T COG0497 266 ELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLE 345 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3444444444444444444443 5666666666666665554445666666666666666666544 56
Q ss_pred HHHHHHHHhhhhhhHHhHHHHHHH-HHHHhhcc
Q 021597 199 TLESKLIEIEGKQDITTLGVKKLC-DRARELEN 230 (310)
Q Consensus 199 ~Le~Ki~~ie~kQd~Tn~GV~~LC-~f~~~~~~ 230 (310)
.||.++..+..+=..+..-+-..= +++..++.
T Consensus 346 ~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~ 378 (557)
T COG0497 346 ALEKEVKKLKAELLEAAEALSAIRKKAAKELEK 378 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666444444443332 34444443
No 345
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.40 E-value=3.5e+02 Score=31.34 Aligned_cols=95 Identities=13% Similarity=0.199 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHH----------HHHhHhhhhhhHHHHHHHHHHHH---HHHHHhhhchhhhhhHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQ----------LSSKITSVDRDVNKIVEISQATQ---EEVTILRGRSKLIGDEF 190 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrh----------LsqRI~~vD~klde~~eis~~i~---~eV~~v~~dl~~ig~Dv 190 (310)
++|.+-|+.+..-|+-+-..+.+.... |..|-..+...+++..-+--.+. +|+.+++-..+.=+.|+
T Consensus 899 ~~lr~sleq~nstl~ll~~~~~~~Ey~~~~~ps~~~pl~~RA~~~K~~~edaegL~~tle~re~eikeLkk~aKmkqeel 978 (1243)
T KOG0971|consen 899 ECLRQSLEQLNSTLNLLATAMQEGEYDAERPPSKPPPLELRAAALKAEIEDAEGLGLTLEDRETEIKELKKSAKMKQEEL 978 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCcHHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHhhHHHH
Confidence 455655555555554444444433333 56666665555554443332222 33444444455555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHhHHH
Q 021597 191 QSVRDIVQTLESKLIEIEGKQDITTLGV 218 (310)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV 218 (310)
-+.+--....|.||++...+++....++
T Consensus 979 Se~qvRldmaEkkLss~~k~~~h~v~~~ 1006 (1243)
T KOG0971|consen 979 SEAQVRLDLAEKKLSSAAKDADHRVEKV 1006 (1243)
T ss_pred HHHHHHHHHHHHHhhhhhhhHhHHHHHH
Confidence 5555555555555555554444444433
No 346
>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]
Probab=42.23 E-value=1.4e+02 Score=32.30 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=24.7
Q ss_pred CcccccccCCCCCC---CCCCCCCCCC-CCCCCCCCCCCCC
Q 021597 243 TLSRTTLELPGITP---SSRSGSLHPL-PLEPPSPSXXXXX 279 (310)
Q Consensus 243 ~s~~~ale~~~~~p---~sr~~slpp~-~~e~~sps~~~~~ 279 (310)
+.++|+=|.||+.- ...+..+||. |..-|.|.+..||
T Consensus 787 a~pi~aNesP~iPhepfatkadaeP~s~ptsE~a~~eea~S 827 (838)
T KOG0630|consen 787 AHPIPANESPPIPHEPFATKADAEPPSEPTSEPAPGEEAGS 827 (838)
T ss_pred CCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcC
Confidence 46889999888631 2556677777 6655666666665
No 347
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=42.18 E-value=90 Score=26.60 Aligned_cols=19 Identities=16% Similarity=-0.085 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 021597 190 FQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie 208 (310)
++.++++-..|+.+++.++
T Consensus 94 i~~L~~~~~~L~~~i~~~~ 112 (131)
T cd04786 94 EARLAQNKAQLLVLIDLIE 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333333333444444333
No 348
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=42.10 E-value=1.9e+02 Score=25.95 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhcC
Q 021597 61 LLAEVSSVQQELSHV 75 (310)
Q Consensus 61 L~aQV~~LaqElr~L 75 (310)
|-..|+.+.++|..+
T Consensus 28 l~q~ird~e~~l~~a 42 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKA 42 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555677777776666
No 349
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=42.09 E-value=88 Score=25.32 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhccC
Q 021597 190 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENG 231 (310)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~~ 231 (310)
+..+|.....|=.+++.+..--+---..=.+|++|++.+...
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444555544433333333456899999888553
No 350
>PRK10807 paraquat-inducible protein B; Provisional
Probab=42.03 E-value=90 Score=32.82 Aligned_cols=22 Identities=0% Similarity=0.105 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhHhhhhhhH
Q 021597 141 YSSISAAQRQLSSKITSVDRDV 162 (310)
Q Consensus 141 s~sL~~aKrhLsqRI~~vD~kl 162 (310)
-+.+.++=+++.+-+++++..+
T Consensus 438 ~~~l~~tL~~~~~tl~~l~~~l 459 (547)
T PRK10807 438 IEQATSTLSESQRTMRELQTTL 459 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 351
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=41.76 E-value=4.4e+02 Score=30.87 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 021597 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 169 s~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
.++++.++.+++..+.....++...+.-...++.++.+.+.+-
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777766666666665554
No 352
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=41.73 E-value=2.4e+02 Score=30.85 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=49.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 021597 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (310)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (310)
++-+..+--..++|+.+|..+=.++.+||=++...++.+..=+...++++..++++++....|-.
T Consensus 37 s~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~ 101 (766)
T PF10191_consen 37 SSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTA 101 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHH
Confidence 33333333456788888888889999999999999998888888888888888888877666543
No 353
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=41.65 E-value=1.9e+02 Score=31.64 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhHHHHHHHHHHHHHHHHHH
Q 021597 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~---~ig~Dv~~v~~~V~~Le~Ki~~ 206 (310)
.+.+..-..+..+=+.|.-++.+|+..+++++......++++..++..+. .++.++.....-+..|+-+|.+
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
No 354
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=41.55 E-value=1.2e+02 Score=32.38 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhHH------HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021597 125 SLSDACNSVARQLE------DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (310)
Q Consensus 125 nms~Av~sv~KqLe------qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (310)
.+.++|.+.-..|. .+.+.|-.+.++|.. +...|.++.+..+.....-.+|.++
T Consensus 222 kl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~-~~~~d~~l~~~~~~l~ea~~~l~ea 281 (557)
T COG0497 222 KLAEAIQNALELLSGEDDTVSALSLLGRALEALED-LSEYDGKLSELAELLEEALYELEEA 281 (557)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH-hhccChhHHHHHHHHHHHHHHHHHH
Confidence 34555555555664 366777777777743 3444445554444444444333333
No 355
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=41.41 E-value=2.2e+02 Score=30.85 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=62.2
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh
Q 021597 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (310)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~ 227 (310)
|+.|.+.|++|...+.++..=.+.+..|+......++++-+++.+.++----|+..=...+.-+..-.+=...|+.+++.
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~ 160 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQ 160 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999998888888999999888888888888899888877777766666665555555555555555553
Q ss_pred h
Q 021597 228 L 228 (310)
Q Consensus 228 ~ 228 (310)
+
T Consensus 161 ~ 161 (632)
T PF14817_consen 161 L 161 (632)
T ss_pred H
Confidence 3
No 356
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.39 E-value=2.3e+02 Score=28.37 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=71.4
Q ss_pred hhhHH-HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH--------------------------------HHH
Q 021597 123 RRSLS-DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV--------------------------------EIS 169 (310)
Q Consensus 123 KRnms-~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~--------------------------------eis 169 (310)
++++. |+...++.+|.+.+...+...-..-.||.+-+.+-.+-. +.+
T Consensus 134 e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~ 213 (305)
T KOG0809|consen 134 ERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVV 213 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHHH
Confidence 45555 788889999999999999888777777766544322211 122
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHh----HHHHHHHHH
Q 021597 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT----LGVKKLCDR 224 (310)
Q Consensus 170 ~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn----~GV~~LC~f 224 (310)
..=.+||+.+..-+.....-++.+..+|-.=+.=||+|.++-+-|+ .|..-|-..
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KA 272 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKA 272 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHH
Confidence 2223568888888777777788888888888888999988855544 566666543
No 357
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.11 E-value=2.9e+02 Score=27.59 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=24.7
Q ss_pred HhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 178 ILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 178 ~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
|++.-|+.-+.+|++++++|+++-..|..=
T Consensus 114 EAQLALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 114 EAQLALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 566678899999999999999988777643
No 358
>PRK15396 murein lipoprotein; Provisional
Probab=41.05 E-value=89 Score=25.18 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=17.2
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ 185 (310)
|+..++.|..|+|+...-....+.++..++++-.+
T Consensus 30 LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~r 64 (78)
T PRK15396 30 LSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555444444333
No 359
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=41.03 E-value=1.9e+02 Score=28.94 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021597 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsq 153 (310)
++..+++..-+.+|++++.+.|..+.+.|..
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888889999999888888877764
No 360
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=41.01 E-value=2.9e+02 Score=25.42 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=32.6
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 021597 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (310)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD 159 (310)
..-.|+.+.+.+..+.|.+...+..|..+|+.--++=..++
T Consensus 97 ~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e 137 (239)
T cd07647 97 QKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKD 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888899999999999999999999988776644443
No 361
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.91 E-value=1.6e+02 Score=31.59 Aligned_cols=99 Identities=17% Similarity=0.256 Sum_probs=74.8
Q ss_pred EecccCcCch--hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH--------------
Q 021597 109 WWKGWKLPDM--MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT-------------- 172 (310)
Q Consensus 109 wWKGws~SDl--MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i-------------- 172 (310)
.=+|+|.+|| |-.-|--|..-.+-++-+-+.+-.++-+++.+...+++.|.+++.+-+-+...|
T Consensus 361 ~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~ 440 (622)
T COG5185 361 RKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDS 440 (622)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCC
Confidence 4568888885 888898999999999999999999999999999999999999887765443322
Q ss_pred -------------------------------HHHHH-------HhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 173 -------------------------------QEEVT-------ILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 173 -------------------------------~~eV~-------~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
+.+++ .+.+++.+...|+..+++..+++|.+|.+.
T Consensus 441 ~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a 513 (622)
T COG5185 441 SLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEA 513 (622)
T ss_pred ceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 11121 145666667777777777777777777654
No 362
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=40.87 E-value=2.5e+02 Score=24.64 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 021597 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (310)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl 183 (310)
+.+.|....+.+..||+.|...|++....+..+.+-|..++.-+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~ 66 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSL 66 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56778889999999999999999998888887777776665543
No 363
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=40.74 E-value=90 Score=29.76 Aligned_cols=44 Identities=11% Similarity=0.288 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021597 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (310)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (310)
.+=.-|.+.|..+.+|...|...+.++.+.....+.||..+|.|
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999888888888777776
No 364
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=40.58 E-value=1.9e+02 Score=27.84 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhh-------HHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 021597 162 VNKIVEISQATQEEVTILRGRSKLIGD-------EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (310)
Q Consensus 162 lde~~eis~~i~~eV~~v~~dl~~ig~-------Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (310)
+++..+-.+.+++.+..++..++.... -...+...++..+.++..++....-+..-...+|+|.+
T Consensus 276 ~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfg 347 (370)
T PF02181_consen 276 LDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFG 347 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333333344444444444444433332 46677888999999999999999999999999999883
No 365
>PRK01156 chromosome segregation protein; Provisional
Probab=40.58 E-value=3.2e+02 Score=29.75 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhh
Q 021597 136 QLEDVYSSISAAQRQLSSKITSVDR 160 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~ 160 (310)
.+++.++.+..+.+.+..+|..++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~ei~~le~ 187 (895)
T PRK01156 163 SLERNYDKLKDVIDMLRAEISNIDY 187 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443
No 366
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=40.51 E-value=3.4e+02 Score=28.22 Aligned_cols=55 Identities=18% Similarity=0.322 Sum_probs=34.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 021597 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 158 vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (310)
|.+.++|..---...+.+..........+..++.+++.+|.+||.....+.-+-.
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeq 297 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQ 297 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcccc
Confidence 3333333333333444444444444556788999999999999998887765543
No 367
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=40.45 E-value=2.2e+02 Score=26.08 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 021597 191 QSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
..+...|..++.+|.+|+.++
T Consensus 138 ~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 138 KLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666667777766654
No 368
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=40.40 E-value=2.2e+02 Score=26.86 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=10.5
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 021597 157 SVDRDVNKIVEISQATQEE 175 (310)
Q Consensus 157 ~vD~klde~~eis~~i~~e 175 (310)
.+.+-++..+++.+.|+++
T Consensus 7 ~~~d~~~~l~~v~~~iK~~ 25 (205)
T PF12238_consen 7 SSKDALKALKKVLDLIKEN 25 (205)
T ss_pred hhHHHHHHHHHHHHHHccC
Confidence 3445555556666666554
No 369
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=40.21 E-value=5.1e+02 Score=27.96 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=12.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 021597 128 DACNSVARQLEDVYSSISAAQRQL 151 (310)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhL 151 (310)
+|.+=+.+||+.+.+.|..+.+.|
T Consensus 267 ~a~~fL~~qL~~l~~~L~~aE~~l 290 (726)
T PRK09841 267 QSLEFLQRQLPEVRSELDQAEEKL 290 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554443
No 370
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=40.11 E-value=3.6e+02 Score=26.18 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhHhhhhhh----HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 143 SISAAQRQLSSKITSVDRD----VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~k----lde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
+|+....++.+.|+.+..+ +-+..+....+.+++..+...+.++..++.++.........+...+..+
T Consensus 18 ~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~ 89 (338)
T PF04124_consen 18 SLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEE 89 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433 2233455555556666666666666666666555555555554444333
No 371
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=39.97 E-value=2.7e+02 Score=24.79 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=35.9
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 021597 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ 166 (310)
-.|+.+.+-+..+.+.|+.+.+++..-..++.++|...|+.+|+..
T Consensus 20 ~~~~el~~M~~~v~~ml~~~~~al~~~d~~~~~~i~~~e~~id~l~ 65 (236)
T PRK11115 20 SIRTQVLTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMME 65 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHChHHHHHHH
Confidence 3567777778888888888888887777778888888888777765
No 372
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.83 E-value=2.7e+02 Score=30.48 Aligned_cols=79 Identities=13% Similarity=0.283 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 021597 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (310)
||||..- +-+++=+..+..-.+=+++..|+++|+..+++++-....++.+.+....+...+-...+.+++--..||.
T Consensus 51 RRnLr~~---iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~ 127 (655)
T KOG3758|consen 51 RRNLRSD---IESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLEL 127 (655)
T ss_pred HhhhhhH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 7877654 4456666677777778889999999999999999999999999888888877776666666654444444
Q ss_pred HH
Q 021597 203 KL 204 (310)
Q Consensus 203 Ki 204 (310)
|.
T Consensus 128 r~ 129 (655)
T KOG3758|consen 128 RK 129 (655)
T ss_pred HH
Confidence 43
No 373
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=39.81 E-value=4.9e+02 Score=31.99 Aligned_cols=78 Identities=23% Similarity=0.337 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (310)
++..-+.+|-.+....-.+-+++|+.+.+||+.|.+.|...+.= .++++..+|.-......++..-+..|..+...+
T Consensus 777 ~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k---lq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~ 853 (1822)
T KOG4674|consen 777 SLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK---LQEKSSDLRELTNSLEKQLENAQNLVDELESEL 853 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 34444555556666667888999999999999998877665432 444444444444444444444444444444443
Q ss_pred H
Q 021597 205 I 205 (310)
Q Consensus 205 ~ 205 (310)
+
T Consensus 854 ~ 854 (1822)
T KOG4674|consen 854 K 854 (1822)
T ss_pred H
Confidence 3
No 374
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=39.78 E-value=29 Score=23.95 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.9
Q ss_pred eeeEEecccCcCchhhhhhhhHHHH
Q 021597 105 YGYVWWKGWKLPDMMFATRRSLSDA 129 (310)
Q Consensus 105 YgYmwWKGws~SDlMfVTKRnms~A 129 (310)
.-++.|+|++-.|-.+++..+|.++
T Consensus 21 ~y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 21 EYLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred EEEEEECCCCCccCccccHHHhCch
Confidence 3478999999999999999999876
No 375
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=39.75 E-value=2.4e+02 Score=27.53 Aligned_cols=8 Identities=38% Similarity=0.617 Sum_probs=3.3
Q ss_pred hhheeeEE
Q 021597 102 AVGYGYVW 109 (310)
Q Consensus 102 avGYgYmw 109 (310)
|+|+.|.|
T Consensus 195 Aa~~Lc~W 202 (344)
T PF12777_consen 195 AAGSLCKW 202 (344)
T ss_dssp THHHHHHH
T ss_pred cchHHHHH
Confidence 34444444
No 376
>PRK04654 sec-independent translocase; Provisional
Probab=39.62 E-value=2.8e+02 Score=26.41 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~ 156 (310)
+.|=.+...+++-+.++-..+..+|+++.+-++
T Consensus 23 erLPe~aRtlGk~irk~R~~~~~vk~El~~El~ 55 (214)
T PRK04654 23 ERLPKAARFAGLWVRRARMQWDSVKQELERELE 55 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777788888888777777777777776554
No 377
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=39.60 E-value=3.6e+02 Score=26.48 Aligned_cols=113 Identities=16% Similarity=0.280 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcC-CCceEEEeCCCCCCCCchhHHHHHHhhhheeeEEecccCcCchhhhhhhhHHHHHHHHHHhHHH
Q 021597 61 LLAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLED 139 (310)
Q Consensus 61 L~aQV~~LaqElr~L-sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeq 139 (310)
++.|+..|+-|+.+. .+..-|+..+ . -++.++ .|..|. -+..+|+.
T Consensus 57 l~~~~k~L~aE~~qwqk~~peii~~n---~-----~VL~~l---------------------gkeelq----kl~~eLe~ 103 (268)
T PF11802_consen 57 LMMRVKCLTAELEQWQKRTPEIIPLN---P-----EVLLTL---------------------GKEELQ----KLISELEM 103 (268)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCC---H-----HHHHHH---------------------HHHHHH----HHHHHHHH
Confidence 888999999999998 6655566554 1 112222 244444 45567888
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 021597 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
|-..+.+=.++|..-+++-..=|+|+++|-+.......+++.....+.+ +.++..|+.||..++.-+
T Consensus 104 vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-----~rv~~el~~K~~~~k~~~ 170 (268)
T PF11802_consen 104 VLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE-----SRVFQELKTKIEKIKEYK 170 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-----HHHHHHHHHHHHHHHHHH
Confidence 8888888888999989999999999999999888888777765555443 355678888888777443
No 378
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=39.59 E-value=3.9e+02 Score=26.48 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=17.7
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 021597 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 174 ~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
+++...+..++++..-...++.++.+++.+..
T Consensus 141 ~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 141 RELAVAQERLEQMQSKASETQATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555566666655555544
No 379
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.48 E-value=3e+02 Score=25.04 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=24.0
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 021597 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQR 149 (310)
Q Consensus 118 lMfVTKRnms~Av~sv~KqLeqVs~sL~~aKr 149 (310)
-++-.-..+.+-++.+-+.++.+.+.|..+|.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777888888888888877777753
No 380
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=39.47 E-value=2.7e+02 Score=24.63 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=15.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhh
Q 021597 131 NSVARQLEDVYSSISAAQRQLSSKITSVDR 160 (310)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~ 160 (310)
+.+-...+++..-+..-+.+|...|+.+..
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555444
No 381
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=39.38 E-value=3e+02 Score=25.03 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~ 173 (310)
.+|++++..++.-.++++..... |-.+=.-.+...|++...++..++
T Consensus 58 ~~l~~~l~~~a~~~~~~~~~~~~---~a~~e~~~l~~~L~ey~r~~~Svk 104 (216)
T cd07627 58 KSLSDLLAALAEVQKRIKESLER---QALQDVLTLGVTLDEYIRSIGSVR 104 (216)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665555555555544433 333334445555555555555554
No 382
>PRK11677 hypothetical protein; Provisional
Probab=39.33 E-value=2e+02 Score=25.22 Aligned_cols=39 Identities=5% Similarity=0.109 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021597 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (310)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (310)
.++...|..+|.+|.+-=+.|.+...+..++...+.++=
T Consensus 32 ~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y 70 (134)
T PRK11677 32 QALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDY 70 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666667777777777777666655
No 383
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=39.27 E-value=1.7e+02 Score=31.25 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 021597 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
++++..|+++....-+.|-..+.+.++..+-......||.++-.-++.+..++..+++-+..+|.+=.
T Consensus 8 ~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~ 75 (701)
T PF09763_consen 8 ERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNN 75 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44555666666666666666777777666666666677766666666666666666655555554433
No 384
>PRK04863 mukB cell division protein MukB; Provisional
Probab=39.27 E-value=5.1e+02 Score=30.99 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhcC
Q 021597 61 LLAEVSSVQQELSHV 75 (310)
Q Consensus 61 L~aQV~~LaqElr~L 75 (310)
+...++..++=+..+
T Consensus 235 m~~~l~~~r~t~~~~ 249 (1486)
T PRK04863 235 MEAALRENRMTLEAI 249 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666555555444
No 385
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.15 E-value=1e+02 Score=26.88 Aligned_cols=60 Identities=13% Similarity=0.268 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhH--HHHHHHHHHHHHHHHHhhhchhhhhh
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV--NKIVEISQATQEEVTILRGRSKLIGD 188 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~kl--de~~eis~~i~~eV~~v~~dl~~ig~ 188 (310)
.|..-+..+..+|..+... -++|...+..+...+ ++..+...+.++|+..+...|..+..
T Consensus 76 ~ld~ei~~L~~el~~l~~~----~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKE----VKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555554444333 344445555555544 55566666666677666666666554
No 386
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=39.07 E-value=1.4e+02 Score=32.65 Aligned_cols=53 Identities=6% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (310)
..++.+..+-.+++.|..+-.++.+=.++-+.+|+.|..||..++.--..+.-
T Consensus 72 ~es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~ 124 (683)
T KOG1961|consen 72 KESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQL 124 (683)
T ss_pred HhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHH
Confidence 35568888999999999999999999999999999999999999966544443
No 387
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=39.03 E-value=1.8e+02 Score=22.53 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=8.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 021597 132 SVARQLEDVYSSISAAQRQLS 152 (310)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLs 152 (310)
.+-.++++|.+.+...=+.+-
T Consensus 7 ~i~~~v~~v~~im~~Ni~~ll 27 (89)
T PF00957_consen 7 QIQEQVEEVKNIMRENIDKLL 27 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333
No 388
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=39.00 E-value=3.5e+02 Score=29.88 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH---HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQL---SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhL---sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (310)
|.+++-+..+.+.+.....++...|++- .++.+.+--++++....-++|+..+.+.+..++.+.+-...++.=...|
T Consensus 534 ~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 534 RGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777777653 3444445555555555555555554444444443333333333333333
Q ss_pred HHHHHHh
Q 021597 201 ESKLIEI 207 (310)
Q Consensus 201 e~Ki~~i 207 (310)
-.|+.++
T Consensus 614 ~~kle~~ 620 (698)
T KOG0978|consen 614 KRKLERL 620 (698)
T ss_pred HHHHHHh
Confidence 3444433
No 389
>PHA03395 p10 fibrous body protein; Provisional
Probab=38.88 E-value=1.2e+02 Score=25.14 Aligned_cols=22 Identities=5% Similarity=0.279 Sum_probs=12.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 021597 127 SDACNSVARQLEDVYSSISAAQ 148 (310)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aK 148 (310)
.+|++.+..+++-++.++...+
T Consensus 10 r~dIkavd~KVdalQ~~V~~l~ 31 (87)
T PHA03395 10 RQDIKAVSDKVDALQAAVDDVR 31 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3455556666655555555544
No 390
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.81 E-value=3.9e+02 Score=26.21 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=19.8
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 021597 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (310)
Q Consensus 176 V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (310)
=+++...++....+++.+|.-...||....+++.+-+.-..-|+.|-.
T Consensus 151 keeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~ 198 (290)
T COG4026 151 KEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKK 198 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 333333334444444444444444444444444443333333444443
No 391
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.78 E-value=1.1e+02 Score=26.46 Aligned_cols=49 Identities=12% Similarity=0.254 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~ 173 (310)
-|.+|.+.==|-+.||-|.|+.--.+|+++.++|.--|.+..+|...++
T Consensus 58 eMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst~ 106 (120)
T KOG4559|consen 58 EMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDSTD 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4667777777778888888887778888888888777777777666654
No 392
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=38.76 E-value=2.1e+02 Score=28.55 Aligned_cols=76 Identities=24% Similarity=0.295 Sum_probs=42.2
Q ss_pred hhhhhhHHH----HHHHHHHhHHHHHH----HHHHHHHHHHHhHhhhhhhHHHHHHHHH-------HHHHHHHHhhhchh
Q 021597 120 FATRRSLSD----ACNSVARQLEDVYS----SISAAQRQLSSKITSVDRDVNKIVEISQ-------ATQEEVTILRGRSK 184 (310)
Q Consensus 120 fVTKRnms~----Av~sv~KqLeqVs~----sL~~aKrhLsqRI~~vD~klde~~eis~-------~i~~eV~~v~~dl~ 184 (310)
||-|.+.+= |+..+++=|++|-+ .|...|+.|..||+-|.--+|=++=++. .+-.=...+|.++.
T Consensus 15 fAIRSGIslaS~yAikq~s~~l~~ip~~~~~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L~~~L~~eI~ 94 (302)
T PF05508_consen 15 FAIRSGISLASSYAIKQCSRFLKKIPDKDRKELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPLTKDLRREID 94 (302)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 566666653 45666666666544 5777788888888777766654433322 12222334444445
Q ss_pred hhhhHHHHHHH
Q 021597 185 LIGDEFQSVRD 195 (310)
Q Consensus 185 ~ig~Dv~~v~~ 195 (310)
.++..++.+-.
T Consensus 95 ~f~~~l~~~~~ 105 (302)
T PF05508_consen 95 SFDERLEEAAE 105 (302)
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 393
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.67 E-value=1.3e+02 Score=25.52 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 021597 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (310)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsq 153 (310)
-|+++=++++.+.+||.++++.+++-|.++..
T Consensus 2 dk~elfd~l~~le~~l~~l~~el~~LK~~~~e 33 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVLLKELGALKKQLAE 33 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888888888888887777776654
No 394
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=38.58 E-value=2.7e+02 Score=24.25 Aligned_cols=84 Identities=13% Similarity=0.302 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc--hhhhhhHHHHH----HHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR--SKLIGDEFQSV----RDIV 197 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d--l~~ig~Dv~~v----~~~V 197 (310)
.++..=.+++..+++++-..=.+-+....++-+..+..|+++.+.-..+.+....+..+ +.-++++.+.+ ....
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 56666677888888888777778888999999999999999999999999877666654 34444444443 4445
Q ss_pred HHHHHHHHHh
Q 021597 198 QTLESKLIEI 207 (310)
Q Consensus 198 ~~Le~Ki~~i 207 (310)
..||.+|..-
T Consensus 103 ~~L~k~I~~~ 112 (126)
T PF09403_consen 103 NKLDKEIAEQ 112 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 395
>COG3910 Predicted ATPase [General function prediction only]
Probab=38.47 E-value=40 Score=32.20 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcC--CCceEEEeCCCCCCCCchhHHHHHHhhhheeeEEecccC
Q 021597 64 EVSSVQQELSHV--PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWK 114 (310)
Q Consensus 64 QV~~LaqElr~L--sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmwWKGws 114 (310)
-++.|+. .| .-|||++.|. .|+ .+.+++=+| |+||+|=---|-+
T Consensus 25 a~r~l~~---~LeF~apIT~i~GE-NGs--GKSTLLEai-A~~~~~n~aGg~~ 70 (233)
T COG3910 25 AFRHLEE---RLEFRAPITFITGE-NGS--GKSTLLEAI-AAGMGFNAAGGGK 70 (233)
T ss_pred HHHhhhh---hccccCceEEEEcC-CCc--cHHHHHHHH-HhhccccccCCCc
Confidence 4777776 45 7799999997 233 366665444 6677776655554
No 396
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=38.46 E-value=2e+02 Score=25.71 Aligned_cols=53 Identities=15% Similarity=0.336 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 142 ~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
..+.+...+|..||..++..+.+.....+.++||...++--+.....-+..++
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556677777777777777777777777777776666555555444443
No 397
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=38.30 E-value=1.6e+02 Score=27.54 Aligned_cols=46 Identities=22% Similarity=0.515 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHH-------HHHHH---HHHhHhhhhhhHHHHHHHHH
Q 021597 125 SLSDACNSVARQLEDVYSSIS-------AAQRQ---LSSKITSVDRDVNKIVEISQ 170 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~-------~aKrh---LsqRI~~vD~klde~~eis~ 170 (310)
|+.+=+..+--++++..+.+. +.|+. |.|||.+||.|+|++-++.+
T Consensus 83 nlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444455555555554 22222 33455555555555554444
No 398
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=38.27 E-value=3.3e+02 Score=25.22 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~v 158 (310)
.+++.++..+..-+..+.+.|+.-|..+...|++.
T Consensus 88 ~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~ 122 (247)
T PF06705_consen 88 EQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEEL 122 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45666666666666666666666666666666654
No 399
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=38.25 E-value=3.2e+02 Score=32.12 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=10.5
Q ss_pred CcCchhhhhhhhHHHHHHHH
Q 021597 114 KLPDMMFATRRSLSDACNSV 133 (310)
Q Consensus 114 s~SDlMfVTKRnms~Av~sv 133 (310)
+.+|+-+....+.+-||..+
T Consensus 893 ~~p~f~~~~v~~~s~a~~~l 912 (1395)
T KOG3595|consen 893 QNPDFVPEKVNRASLACEGL 912 (1395)
T ss_pred CCccCCHHHHHhhhhhhhhH
Confidence 34555555555555555554
No 400
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=38.19 E-value=3.1e+02 Score=30.01 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=21.4
Q ss_pred hhhhhhhhHHHHHHHH----HHhHHHHHHHHHHHHHHH
Q 021597 118 MMFATRRSLSDACNSV----ARQLEDVYSSISAAQRQL 151 (310)
Q Consensus 118 lMfVTKRnms~Av~sv----~KqLeqVs~sL~~aKrhL 151 (310)
.||+|.+.|...+... ...++++..-+..+..|+
T Consensus 159 ~aF~~n~~l~~~v~~~~~~~~~~~~Dl~~~l~~~~~qi 196 (806)
T PF05478_consen 159 CAFVANQQLSTGVDDTPNTVNSTLDDLRTFLNDTPQQI 196 (806)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4899998887777644 445555555555555544
No 401
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=38.10 E-value=1.3e+02 Score=29.42 Aligned_cols=11 Identities=18% Similarity=0.353 Sum_probs=5.6
Q ss_pred CCCCCCCcchh
Q 021597 277 XXXXXIPMDLI 287 (310)
Q Consensus 277 ~~~~~~~~~~~ 287 (310)
.|.|-.|.++.
T Consensus 114 ~gG~lIP~~~~ 124 (378)
T TIGR01554 114 DGGVTIPEEIG 124 (378)
T ss_pred CCCeeCCHHHH
Confidence 44555555544
No 402
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=37.92 E-value=1.6e+02 Score=21.56 Aligned_cols=18 Identities=6% Similarity=0.235 Sum_probs=8.5
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 021597 184 KLIGDEFQSVRDIVQTLE 201 (310)
Q Consensus 184 ~~ig~Dv~~v~~~V~~Le 201 (310)
..+...+...+.++..++
T Consensus 46 ~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 46 DDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 444444555555554443
No 403
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.75 E-value=3.8e+02 Score=29.89 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=47.0
Q ss_pred ccCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH---------HHHHHHHHHhhhc
Q 021597 112 GWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS---------QATQEEVTILRGR 182 (310)
Q Consensus 112 Gws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis---------~~i~~eV~~v~~d 182 (310)
.-.||+=||-| -+-+-+.++.|++.+...|+..+++|-+.. +++..+--...+ ...+..|.++++.
T Consensus 55 n~~fSv~~~tS---as~~s~~ia~q~~~L~q~lr~ldrqLh~qv--~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~ 129 (797)
T KOG2211|consen 55 NTLFSVQMMTS---ASKESNRIATQCDDLTQKLRELDRQLHAQV--LKRHMALLAQATEELFEDLELRSLLVKVAELQSE 129 (797)
T ss_pred cchhhhhhHHH---HHHhcCCHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33467767533 233455678888888888888888876543 222222211122 2344567777777
Q ss_pred hhhhhhHHHHHHHH
Q 021597 183 SKLIGDEFQSVRDI 196 (310)
Q Consensus 183 l~~ig~Dv~~v~~~ 196 (310)
+.+|..|+..-.+.
T Consensus 130 i~riknd~~epyk~ 143 (797)
T KOG2211|consen 130 IKRIKNDNKEPYKI 143 (797)
T ss_pred HHHHHHhhhhHHHH
Confidence 77777777655443
No 404
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=37.73 E-value=82 Score=31.36 Aligned_cols=76 Identities=11% Similarity=0.173 Sum_probs=47.1
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc------hh-hhhhHHHH
Q 021597 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR------SK-LIGDEFQS 192 (310)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d------l~-~ig~Dv~~ 192 (310)
|+.+--+.|-|..-++-+..++..+.-=...|..||+.+=..++++....+++.+.+..+++- |. .++.|++.
T Consensus 203 ~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qk 282 (307)
T PF15112_consen 203 HIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEELQK 282 (307)
T ss_pred cCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 344444555555555555556666666666677777777777777776667777776666553 33 56666644
Q ss_pred HHH
Q 021597 193 VRD 195 (310)
Q Consensus 193 v~~ 195 (310)
|+.
T Consensus 283 L~~ 285 (307)
T PF15112_consen 283 LDS 285 (307)
T ss_pred HHH
Confidence 443
No 405
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=37.62 E-value=3.7e+02 Score=29.05 Aligned_cols=106 Identities=21% Similarity=0.312 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH---HH
Q 021597 125 SLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI---VQ 198 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~---~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~---V~ 198 (310)
.++.-.+.+-..++++|+-+. +||+....+...+-+.|+.+++....+++|+..|+..----..|...++.. ..
T Consensus 278 ~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~ 357 (570)
T COG4477 278 EAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELK 357 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhhHHhHHHHHHHHHHHhhcc
Q 021597 199 TLESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (310)
Q Consensus 199 ~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~ 230 (310)
.|+.-++.|-++++-...--..|..-++.+++
T Consensus 358 el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~ 389 (570)
T COG4477 358 ELESVLDEILENIEAQEVAYSELQDNLEEIEK 389 (570)
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
No 406
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.58 E-value=3.4e+02 Score=31.35 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=19.3
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v 193 (310)
+..+|..+-.+++...+..+.+..++.++...+.++......+
T Consensus 222 ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~ 264 (1311)
T TIGR00606 222 IRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKI 264 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444443333333
No 407
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=37.57 E-value=98 Score=31.29 Aligned_cols=14 Identities=7% Similarity=0.169 Sum_probs=8.1
Q ss_pred hhhHHHHHHHhhhc
Q 021597 34 VGGTLKIVSKLIKQ 47 (310)
Q Consensus 34 lsg~lk~l~k~lk~ 47 (310)
|-+.|..+..++++
T Consensus 232 L~~~ltrL~~~~~~ 245 (370)
T PLN03094 232 LVGICTRLAREMEA 245 (370)
T ss_pred HHHHHHHHHHHhhh
Confidence 33666666666554
No 408
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=37.44 E-value=2e+02 Score=22.38 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhh
Q 021597 136 QLEDVYSSISAAQRQLSSKITSVD 159 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD 159 (310)
.++++.+.+..+|.-+..-|+.+=
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll 27 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLL 27 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665553
No 409
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=37.26 E-value=74 Score=31.74 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=18.2
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 021597 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQL 151 (310)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhL 151 (310)
+|+..-+..++.+.+.+++++....++..+..|
T Consensus 233 ~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l 265 (406)
T PF02388_consen 233 FFLAELNGKEYLESLQEKLEKLEKEIEKLEEKL 265 (406)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666665555555444433
No 410
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=37.22 E-value=52 Score=29.20 Aligned_cols=43 Identities=16% Similarity=0.424 Sum_probs=28.3
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhHhhhhhhH
Q 021597 120 FATRRSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDV 162 (310)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKr---hLsqRI~~vD~kl 162 (310)
|.-.++..+|.+.+-|..+.+..++..... +|++|++.+...+
T Consensus 86 ~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 86 YYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred eeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455789999999999999887766554332 3444444444443
No 411
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=37.19 E-value=1e+02 Score=23.31 Aligned_cols=32 Identities=9% Similarity=0.270 Sum_probs=19.9
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 021597 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (310)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ 166 (310)
+=|+|+++.....-..+..|||.+..++|+..
T Consensus 10 ~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE 41 (54)
T PF06825_consen 10 NLLQQMQDKFQTMSDQILGRIDEMSSRIDDLE 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33555555666666667777777777766543
No 412
>PHA00276 phage lambda Rz-like lysis protein
Probab=37.06 E-value=1.5e+02 Score=26.64 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 021597 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (310)
Q Consensus 161 klde~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (310)
.+.++.+++.+.++|+..++....++..|+.
T Consensus 50 ~QqaVaal~~~yqkEladaK~~~DrLiadlR 80 (144)
T PHA00276 50 TQAAINAVSKEYQEDLAALEGSTDRVIADLR 80 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3667778888888888887777666665554
No 413
>KOG4832 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.04 E-value=96 Score=30.08 Aligned_cols=69 Identities=20% Similarity=0.369 Sum_probs=44.3
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHH-HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHH
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQ-EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDR 224 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~-~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f 224 (310)
.|.+=|+++.++.++..++-..-. +.-..+. +|..|+..+.+|...++.++..+..=+ -||- ...||..
T Consensus 5 sLeSLIss~ne~igEl~kl~s~rnm~~e~TI~-~L~aI~~~~~sieLllq~ikd~lrqqk----eann-~geLc~~ 74 (253)
T KOG4832|consen 5 SLESLISSVNEKIGELKKLLSLRNMGQEPTIK-VLNAIGDEIISIELLLQKIKDELRQQK----EANN-LGELCES 74 (253)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhcc-hHHHHHH
Confidence 345556677777776665543222 2223333 788999999999999998888776432 2222 6778876
No 414
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=37.01 E-value=4.8e+02 Score=26.79 Aligned_cols=96 Identities=21% Similarity=0.275 Sum_probs=45.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH-HHHHHHHHHHHHHHHhhh-------chhhhhhHHHHHHHHHHHHHHHH
Q 021597 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVN-KIVEISQATQEEVTILRG-------RSKLIGDEFQSVRDIVQTLESKL 204 (310)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~vD~kld-e~~eis~~i~~eV~~v~~-------dl~~ig~Dv~~v~~~V~~Le~Ki 204 (310)
+.+-++.+ ..+.....+|...|++|..++. +...+.+..++|=..... -++--..||.++++-...+|.||
T Consensus 214 l~~~~~el-~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 214 LQKILEEL-REIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33334444 3455555666777777766433 445555555555322221 22233445555555555555555
Q ss_pred HHhhhhhhHHhHHHHHHHH-HHHhhc
Q 021597 205 IEIEGKQDITTLGVKKLCD-RARELE 229 (310)
Q Consensus 205 ~~ie~kQd~Tn~GV~~LC~-f~~~~~ 229 (310)
+=-.+-.-....-+.--|+ -+..+|
T Consensus 293 ~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 293 AYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5333222222333444443 344555
No 415
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=36.94 E-value=4.1e+02 Score=26.28 Aligned_cols=111 Identities=17% Similarity=0.264 Sum_probs=61.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 021597 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (310)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (310)
+=++|.+|=+.|...+++...=-+.|++|+. +.|-+--+.|- .++.+=|||-.--+-.|.+.++
T Consensus 5 ~L~eL~qrk~~Lq~eIe~LerR~~ri~~Emr------tsFaG~Sq~lA----------~RVqGFkdYLvGsLQDLa~saE 68 (283)
T PF11285_consen 5 ALKELEQRKQALQIEIEQLERRRERIEKEMR------TSFAGQSQDLA----------IRVQGFKDYLVGSLQDLAQSAE 68 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccccchHHHH----------HHHhhhHHHHHHHHHHHHHHHH
Confidence 3355666666665555555444455555542 11222222232 2455667777777778888888
Q ss_pred hhccCCCccceeccccCcccccccCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCcchhH
Q 021597 227 ELENGRPTELVQASRYTLSRTTLELPGITPSSRSGSLHPL--PLEPPSPSXXXXXXXIPMDLIR 288 (310)
Q Consensus 227 ~~~~~~~~~~~Q~~~s~s~~~ale~~~~~p~sr~~slpp~--~~e~~sps~~~~~~~~~~~~~~ 288 (310)
+++=-..+...|-+|. .....-|+. +..++.|......|+.-.++||
T Consensus 69 qLeLv~~~~~~~psp~---------------~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~Ir 117 (283)
T PF11285_consen 69 QLELVPQPVVVQPSPL---------------DEPAPPPQANAAKNPPTPQFAAQTFQPDERQIR 117 (283)
T ss_pred hhccCCCCcCCCCCcc---------------cccccCcccccccCCCCCcchhhhcchHHHHHH
Confidence 8887666555542211 111111111 3445666667778998888887
No 416
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=36.78 E-value=4.5e+02 Score=26.32 Aligned_cols=52 Identities=8% Similarity=0.216 Sum_probs=37.6
Q ss_pred HHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 021597 145 SAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (310)
Q Consensus 145 ~~aKrhLsq---RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (310)
..-||+=.| .||.++.-|++|+.-.+.-+.+.+.+++....+-+..+++...
T Consensus 28 dkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~ 82 (307)
T PF10481_consen 28 DKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKT 82 (307)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 334444444 4899999999998888888888888887776666666655544
No 417
>PLN02678 seryl-tRNA synthetase
Probab=36.70 E-value=3.5e+02 Score=28.01 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=50.0
Q ss_pred HhHHHHHHHHHHHHHHH----HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch---hhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 135 RQLEDVYSSISAAQRQL----SSKITSVDRDVNKIVEISQATQEEVTILRGRS---KLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 135 KqLeqVs~sL~~aKrhL----sqRI~~vD~klde~~eis~~i~~eV~~v~~dl---~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
.+.|.|-++|. ||.+ -.+|-.+|.+.-+...-.+..+.+-+.+...+ ..-+.|.+.+..-+..|..+|..+
T Consensus 13 ~~~~~v~~~l~--~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~l 90 (448)
T PLN02678 13 GDPELIRESQR--RRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEK 90 (448)
T ss_pred cCHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Confidence 35556666654 2221 23444444443333333333343333333333 233456777777788889999999
Q ss_pred hhhhhHHhHHHHHHHH
Q 021597 208 EGKQDITTLGVKKLCD 223 (310)
Q Consensus 208 e~kQd~Tn~GV~~LC~ 223 (310)
|...+....-+..++.
T Consensus 91 e~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 91 EAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988888888877654
No 418
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=36.20 E-value=1.2e+02 Score=28.13 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=15.6
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHH
Q 021597 172 TQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (310)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (310)
+++++++++.+++++...++.+.+.|.
T Consensus 167 ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 167 IERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555666666666666666655543
No 419
>PRK12482 flagellar motor protein MotA; Provisional
Probab=36.01 E-value=2.2e+02 Score=27.86 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=67.5
Q ss_pred hHHHHHHhhhheeeEEecc-----cCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh---hhhHHHH
Q 021597 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV---DRDVNKI 165 (310)
Q Consensus 94 y~l~a~iGavGYgYmwWKG-----ws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~v---D~klde~ 165 (310)
.++++++|++.+||+.=.| |.++-+|-|-=-.+ ++.-++.-++++-..+...|+-+..+-.+. .+-++..
T Consensus 5 iGlv~~~~~v~~g~~l~Gg~~~~~~~~~~~lIV~GGt~--ga~lis~p~~~~~~~~k~~~~~f~~~~~~~~~y~~~i~~l 82 (287)
T PRK12482 5 FGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGI--GAMILGNPKSVLKEMWHQIKGVIRRKEYGVEFQRQLLLLL 82 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHhHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Confidence 4566777888888876455 56666776665544 345567888999999999999887765555 4778888
Q ss_pred HHHHHHHHHH-HHHhhhchhhhhh
Q 021597 166 VEISQATQEE-VTILRGRSKLIGD 188 (310)
Q Consensus 166 ~eis~~i~~e-V~~v~~dl~~ig~ 188 (310)
.|+++.-|.| +-.+..+++++.+
T Consensus 83 v~ls~~aRr~GllaLE~~i~~~~d 106 (287)
T PRK12482 83 YELLEMVQEGGLKRLDQHIEIPEE 106 (287)
T ss_pred HHHHHHHHhcCHHHHHHhhcCccc
Confidence 9999888877 6666666666653
No 420
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=35.97 E-value=1.4e+02 Score=25.66 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKr---hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~ 192 (310)
..+.+-++.+.++-.+.+..|..+|+ +|+.|+=+|-.+++-..--.-.+..|-.+++..++.+..++..
T Consensus 54 ~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 54 KEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNA 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
No 421
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=35.97 E-value=1.2e+02 Score=24.60 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHHHHHhH
Q 021597 121 ATRRSLSDACNSVARQL 137 (310)
Q Consensus 121 VTKRnms~Av~sv~KqL 137 (310)
+.+.++.+.++..-+++
T Consensus 29 a~~~~v~~~~~~f~~~~ 45 (113)
T PF02520_consen 29 AEKYGVQDQYNEFKAQV 45 (113)
T ss_pred HHHCCcHHHHHHHHHHH
Confidence 44444444444433333
No 422
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=35.97 E-value=4e+02 Score=30.62 Aligned_cols=84 Identities=19% Similarity=0.337 Sum_probs=42.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH--------HHHhhhc---hhhhhhHHHHHHH
Q 021597 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE--------VTILRGR---SKLIGDEFQSVRD 195 (310)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~e--------V~~v~~d---l~~ig~Dv~~v~~ 195 (310)
....+.+..++++..+.+...++++..+++.++..+..++.-.+.+.++ +.++..+ +..+..+++.++.
T Consensus 287 ~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~ 366 (1201)
T PF12128_consen 287 KEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQE 366 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555554433333322 2222222 2344555566666
Q ss_pred HHHHHHHHHHHhhhh
Q 021597 196 IVQTLESKLIEIEGK 210 (310)
Q Consensus 196 ~V~~Le~Ki~~ie~k 210 (310)
....|..|...|+.+
T Consensus 367 ~~~~Lt~~~~di~~k 381 (1201)
T PF12128_consen 367 QLDLLTSKHQDIESK 381 (1201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666644
No 423
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=35.93 E-value=3.7e+02 Score=25.10 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-------hhHH--hHHHHHHHHHHHhhcc
Q 021597 190 FQSVRDIVQTLESKLIEIEGK-------QDIT--TLGVKKLCDRARELEN 230 (310)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~k-------Qd~T--n~GV~~LC~f~~~~~~ 230 (310)
+..+..-|..+|...|.|+.+ -+.. -..++++|++++.+++
T Consensus 149 ~~~i~~eI~~~E~e~D~i~~~l~k~Lf~~e~~~~~~~~~~~~~i~~~i~~ 198 (217)
T COG1392 149 LLEIIKEIEALEHECDDIQRELLKKLFSLETEINPIDVIILKEIIEKIED 198 (217)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 334444456667666666643 1222 2677888888876543
No 424
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=35.74 E-value=1.1e+02 Score=25.49 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHhh
Q 021597 194 RDIVQTLESKLIEIE 208 (310)
Q Consensus 194 ~~~V~~Le~Ki~~ie 208 (310)
+.....+-.+|..|+
T Consensus 54 ~~~~~~ik~~lk~l~ 68 (151)
T cd00179 54 KKLAKEIKGKLKELE 68 (151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444443
No 425
>PLN02320 seryl-tRNA synthetase
Probab=35.59 E-value=1.4e+02 Score=31.49 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 021597 190 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (310)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (310)
.+.+..-+..|-.+|..+|........-+..++.
T Consensus 132 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555554444444433
No 426
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=35.57 E-value=3.1e+02 Score=27.50 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=14.8
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHH
Q 021597 115 LPDMMFATRRSLSDACNSVARQLED 139 (310)
Q Consensus 115 ~SDlMfVTKRnms~Av~sv~KqLeq 139 (310)
+.+++.+...=..++++.+.+-|..
T Consensus 195 ~~ey~~~~~~~~~ks~e~~~~~l~~ 219 (320)
T TIGR01834 195 MADYQLLEADIGYKSFAALMSDLLA 219 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666665555554
No 427
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=35.52 E-value=1.9e+02 Score=29.11 Aligned_cols=26 Identities=12% Similarity=0.345 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHH
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQ 150 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrh 150 (310)
.+....+.+.+++++..+.+...+++
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 428
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=35.45 E-value=4.6e+02 Score=26.08 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhHHHHHHHHHHHHHHHHHH
Q 021597 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~---~ig~Dv~~v~~~V~~Le~Ki~~ 206 (310)
-|-.--.++.+-|+.+..+|.-+-.+-++..+......+++.+++.+.. .-|.++.++...++-||-+.-.
T Consensus 52 E~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T 125 (294)
T COG1340 52 ELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQT 125 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHh
Confidence 3334445667777888888888888888888888888888888888777 5677788877777777666553
No 429
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.44 E-value=3.8e+02 Score=25.45 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=22.3
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 021597 174 EEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 174 ~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (310)
+||+..-..++++..-|..|+++|+.||.
T Consensus 192 EEi~ksm~pv~~La~qir~irRlve~les 220 (222)
T KOG4514|consen 192 EEITKSMKPVEQLAQQIRQIRRLVEMLES 220 (222)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 55666666677888888888988888875
No 430
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=35.40 E-value=3.9e+02 Score=28.51 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHH---hHhhhhhhHHH------HHHHHH----------------HHHHHHHHhhhchhhhhhHHHHH
Q 021597 139 DVYSSISAAQRQLSS---KITSVDRDVNK------IVEISQ----------------ATQEEVTILRGRSKLIGDEFQSV 193 (310)
Q Consensus 139 qVs~sL~~aKrhLsq---RI~~vD~klde------~~eis~----------------~i~~eV~~v~~dl~~ig~Dv~~v 193 (310)
..-|.+.-|++||.- |||...-+++. -.|++. ..+.|+.++|-....-..|++.+
T Consensus 249 n~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~ 328 (554)
T KOG4677|consen 249 NELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHI 328 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHH
Confidence 355677788888764 44433333333 112221 23678888998888899999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 021597 194 RDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 194 ~~~V~~Le~Ki~~ie~kQ 211 (310)
+.-+..|+..|..||+.|
T Consensus 329 q~q~~~Lrs~~~d~EAq~ 346 (554)
T KOG4677|consen 329 QDQYTLLRSQIIDIEAQD 346 (554)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999764
No 431
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.37 E-value=1.3e+02 Score=29.73 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH-HHHHHHHHHH
Q 021597 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI-VQTLESKLIE 206 (310)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~-V~~Le~Ki~~ 206 (310)
++-|.|+.-|+-|.|+ ..+.-.-..++++++.| .+-..+++..|.+ |..|-.|+.+
T Consensus 229 ~lkeeia~Lkk~L~qk-----------dq~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~ 285 (305)
T KOG3990|consen 229 KLKEEIARLKKLLHQK-----------DQLILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEE 285 (305)
T ss_pred HHHHHHHHHHHHHhhh-----------HHHHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555443 33333334556777777 5555778888877 7777776654
No 432
>PRK11020 hypothetical protein; Provisional
Probab=35.36 E-value=1.7e+02 Score=25.54 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=28.6
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 021597 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (310)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (310)
.+-|++|.++||.|.- +..-...|+|-+- +..+..=+..|+.+|.++-.+|.+-
T Consensus 4 K~Eiq~L~drLD~~~~-----Klaaa~~rgd~~~----i~qf~~E~~~l~k~I~~lk~~~~~~ 57 (118)
T PRK11020 4 KNEIKRLSDRLDAIRH-----KLAAASLRGDAEK----YAQFEKEKATLEAEIARLKEVQSQK 57 (118)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHhcCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666632 1112223333222 2344444566778888888777653
No 433
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=35.23 E-value=1.6e+02 Score=20.57 Aligned_cols=26 Identities=8% Similarity=0.254 Sum_probs=12.0
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHH
Q 021597 153 SKITSVDRDVNKIVEISQATQEEVTI 178 (310)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~~ 178 (310)
++|+++...+-++.++...|..+|.+
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~ 37 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEE 37 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 434
>PF01996 F420_ligase: F420-0:Gamma-glutamyl ligase; InterPro: IPR002847 This entry contains F420-0:gamma-glutamyl ligase and related proteins. F420-0:gamma-glutamyl ligase catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives [, , , ].; PDB: 2G9I_A 2PHN_A.
Probab=35.16 E-value=6.5 Score=36.62 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcC-CCceEEEeCCCCCCCCchhHH-HHHHhhhheeeEE-eccc--CcCchhhhhhhhHHHHHHHHHH
Q 021597 62 LAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGV-IVVIVAVGYGYVW-WKGW--KLPDMMFATRRSLSDACNSVAR 135 (310)
Q Consensus 62 ~aQV~~LaqElr~L-sr~iTVvn~~ssg~gg~~y~l-~a~iGavGYgYmw-WKGw--s~SDlMfVTKRnms~Av~sv~K 135 (310)
.+=.++|+++|++. ...+.|+=.++.|+. .-.+. -+++|+.|.-|+| |+|- -|-.-|-+|.+..+|-.++.+.
T Consensus 133 d~sA~~i~~~l~~~~g~~v~ViI~Dt~gr~-~r~G~~~vaig~~Gi~~~~d~~G~~d~~g~~L~~T~~~~aD~la~aa~ 210 (228)
T PF01996_consen 133 DASARRIREELKERTGKDVGVIITDTNGRP-WRLGQTGVAIGVAGIKPLRDYRGEKDLFGRELKVTPRAVADELASAAD 210 (228)
T ss_dssp HHHHHHHHHHHHHHHS---EEEEEEEEEET-TEECEEEEEEEEESB-SEEE-TT-B-TTS-B-S--EEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCceEEEEECCCCcE-EecCCccchhhccCCccccccCCCchhhhChhccCchhhhhHHHHHhh
Confidence 34578899999988 777776666633432 22333 3688999998988 7676 3566688999999998887664
No 435
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.13 E-value=3.6e+02 Score=24.74 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=11.6
Q ss_pred HHHHhHhhhhhhHHHHHHHHHH
Q 021597 150 QLSSKITSVDRDVNKIVEISQA 171 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~ 171 (310)
||..||..|=.-.+++..+.+.
T Consensus 90 ~l~~RL~kLL~lk~~~~~~~e~ 111 (190)
T PF05266_consen 90 FLRSRLNKLLSLKDDQEKLLEE 111 (190)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 4666666655555544444333
No 436
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=34.96 E-value=4.1e+02 Score=25.39 Aligned_cols=82 Identities=12% Similarity=0.224 Sum_probs=68.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH----------HHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 021597 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE----------ISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (310)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~e----------is~~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (310)
++-++.+-+.|+........+....+.||..+..||-.|.+ ..+..+.+...+-...++-.+-...-+++
T Consensus 20 td~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~ 99 (239)
T PF05276_consen 20 TDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMHAAAKEM 99 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788899999999999999999999999999988765 34677778888888888888888999999
Q ss_pred HHHHHHHHHHhh
Q 021597 197 VQTLESKLIEIE 208 (310)
Q Consensus 197 V~~Le~Ki~~ie 208 (310)
|.-+|..+.+=.
T Consensus 100 v~laEq~l~~~~ 111 (239)
T PF05276_consen 100 VALAEQSLMSDS 111 (239)
T ss_pred HHHHHHHHhcCC
Confidence 999998887644
No 437
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=34.70 E-value=12 Score=28.43 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=15.9
Q ss_pred ceeeeEcCcccceeeccC
Q 021597 7 KLTFLVGAGILTSVLAKE 24 (310)
Q Consensus 7 Kv~ILvGAG~~GSvl~kn 24 (310)
|++++.|+|++.|.++++
T Consensus 1 kIlvvC~~Gi~TS~~~~~ 18 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVAN 18 (90)
T ss_dssp EEEEEESSSSHHHHHHHH
T ss_pred CEEEECCChHHHHHHHHH
Confidence 799999999999988854
No 438
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.65 E-value=2.2e+02 Score=22.22 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHh
Q 021597 160 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (310)
Q Consensus 160 ~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn 215 (310)
.+|.+-.+.+.+.++|-..+...--....-|..++.-+..+|..+..+..+.+-..
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333344444444444444444444443333333
No 439
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=34.58 E-value=1e+02 Score=28.53 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh-HHHHHHHHHHHHHHHHHHhhh
Q 021597 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD-EFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~-Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
+|...+.|--|+-|+.. +++.++-..||+++..+..|++.-++ -..--...|.-||..|++.+.
T Consensus 38 lDElNs~IG~A~~~~~~---------~~i~~~L~~IQ~~LF~lG~dLat~~~~~~~i~~e~v~~LE~~id~y~~ 102 (184)
T COG2096 38 LDELNSFIGLARALLKD---------EDIRAILRRIQNDLFDLGADLATPEEKPLRITEEDVKRLEKRIDAYNA 102 (184)
T ss_pred HHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHhhhhhcCCCccccccCHHHHHHHHHHHHHHHh
Confidence 56777777777777654 77888889999999999999888771 011223446666666665543
No 440
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=34.55 E-value=47 Score=22.71 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.5
Q ss_pred eeEEecccCcCchhhhhhhhHHH
Q 021597 106 GYVWWKGWKLPDMMFATRRSLSD 128 (310)
Q Consensus 106 gYmwWKGws~SDlMfVTKRnms~ 128 (310)
-|+.|+|++-++--+++..++..
T Consensus 20 ylVkW~g~~~~~~tW~~~~~l~~ 42 (55)
T smart00298 20 YLVKWKGYSYSEDTWEPEENLLN 42 (55)
T ss_pred EEEEECCCCCccCceeeHHHHHH
Confidence 47899999999999999988886
No 441
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.50 E-value=1.8e+02 Score=30.85 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=35.1
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 021597 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
+.|.+|+.-=|...+.-.+..+.|.++|++++..=...=--|...++.-..|+.+|=+|--||
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikq 399 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQ 399 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777777763222222233444444444444444444333
No 442
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=34.25 E-value=3.6e+02 Score=24.53 Aligned_cols=11 Identities=36% Similarity=0.304 Sum_probs=5.7
Q ss_pred hHHhhhccccc
Q 021597 287 IRLVDFLNTNV 297 (310)
Q Consensus 287 ~~~~~~~~~~~ 297 (310)
..-|-.||.||
T Consensus 258 ~~~v~lLn~nI 268 (302)
T PF10186_consen 258 EYAVFLLNKNI 268 (302)
T ss_pred HHHHHHHHHHH
Confidence 33445566654
No 443
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=34.16 E-value=23 Score=29.21 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=39.5
Q ss_pred ceeeeEcCcccceeeccCCCCcchhhhhhhHHHHHHHhhh-cCCC-----CCCCccchHH--HHHHHHHHHHHHhcC--C
Q 021597 7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIK-QDDP-----GPSDRKLFND--LLAEVSSVQQELSHV--P 76 (310)
Q Consensus 7 Kv~ILvGAG~~GSvl~knGkLsdv~~~lsg~lk~l~k~lk-~~d~-----s~s~~~~~~d--L~aQV~~LaqElr~L--s 76 (310)
||+++.|+|+..|++++. +.... +. ++++ +-+. ......+.+- |.-||+..-.++++. .
T Consensus 5 kIllvC~~G~sTSll~~k--m~~~~-------~~--~gi~~~V~A~~~~~~~~~~~~~DviLl~Pqi~~~~~~i~~~~~~ 73 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSK--MRAQA-------EK--YEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPN 73 (106)
T ss_pred EEEEECCCCccHHHHHHH--HHHHH-------HH--CCCCEEEEEeecchhhccccCCCEEEECHHHHHHHHHHHhhcCC
Confidence 799999999999999843 22111 00 0111 0011 0001122322 455999999999987 4
Q ss_pred CceEEEeCC
Q 021597 77 RSVIIETSS 85 (310)
Q Consensus 77 r~iTVvn~~ 85 (310)
.||.+++.-
T Consensus 74 ~pV~~I~~~ 82 (106)
T PRK10499 74 KPVEVIDSL 82 (106)
T ss_pred CCEEEEChH
Confidence 688888753
No 444
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.12 E-value=1.5e+02 Score=25.89 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 021597 163 NKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (310)
Q Consensus 163 de~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (310)
.|..|..+..++.|+.+++-.=.|+.||+.=+++..++++-.++....=--|-.-+.-+
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ 90 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTM 90 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999888776655554434333
No 445
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=34.12 E-value=32 Score=32.96 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcC-CCceEEEeCCCCCCCCchhHHHHHHhhhheeeEE-ecccC--cCchhhhhhhhHHHHHHHHHH
Q 021597 63 AEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVW-WKGWK--LPDMMFATRRSLSDACNSVAR 135 (310)
Q Consensus 63 aQV~~LaqElr~L-sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmw-WKGws--~SDlMfVTKRnms~Av~sv~K 135 (310)
+--++|+++|++. ...+.|+-++|-|+.-+....-++||+.|..=+| |+|-+ |---|.+|..+.+|-.++.+.
T Consensus 127 ~SA~~ir~~l~~~~g~~v~VIItDt~gr~~R~G~t~vAIG~aGi~~l~d~rG~~D~~G~~L~vT~~avaDelAaaA~ 203 (245)
T PRK13293 127 ESAERIREGLEELTGKKVGVIITDTNGRPFRKGQRGVAIGVAGIPALWDWRGEKDLFGRELETTEVAVADELAAAAN 203 (245)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEcCCCcccccCCcceeeeccCchHHHhhcCCcCCCCCeeechHHHHHHHHHHHHH
Confidence 4467889999998 7788888887556543333444678887777666 77752 444578999988887766543
No 446
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=34.05 E-value=4.3e+02 Score=29.51 Aligned_cols=82 Identities=16% Similarity=0.282 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrh---LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (310)
+.+.-..+-.|++-+-++|.+...| |..=+++|--+||+-......-...+..+..+.+....+|..++.+..--|.
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ 392 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKER 392 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566678888888888877654 4555555555555555544444444444444444444444444444444444
Q ss_pred HHHHh
Q 021597 203 KLIEI 207 (310)
Q Consensus 203 Ki~~i 207 (310)
||..+
T Consensus 393 ki~~L 397 (775)
T PF10174_consen 393 KINVL 397 (775)
T ss_pred HHHHH
Confidence 44333
No 447
>PRK09343 prefoldin subunit beta; Provisional
Probab=33.91 E-value=1.1e+02 Score=25.90 Aligned_cols=47 Identities=9% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021597 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (310)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i 186 (310)
|-.....++..|..||+-.+.+++....=.+.+++.+.+++..+..+
T Consensus 65 v~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 65 VKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 448
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=33.84 E-value=2.7e+02 Score=25.77 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=16.4
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHH
Q 021597 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI 168 (310)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ei 168 (310)
..|.+-+.+|...-+.++ ||.||+=+|+..|.
T Consensus 111 ~aLk~g~~aLK~~~k~~~--idkVd~lmDei~E~ 142 (191)
T PTZ00446 111 NALSYAANTHKKLNNEIN--TQKVEKIIDTIQEN 142 (191)
T ss_pred HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHH
Confidence 344444444444444442 66666666655543
No 449
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.82 E-value=1.3e+02 Score=22.34 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=13.9
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (310)
++.+.|+.+..++++..+-.+..+.++..+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444
No 450
>PRK09303 adaptive-response sensory kinase; Validated
Probab=33.73 E-value=1e+02 Score=29.64 Aligned_cols=19 Identities=5% Similarity=0.039 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhhchhhh
Q 021597 168 ISQATQEEVTILRGRSKLI 186 (310)
Q Consensus 168 is~~i~~eV~~v~~dl~~i 186 (310)
++-.+++-++.++.-++.+
T Consensus 158 iaHeLrtPLt~i~~~~e~l 176 (380)
T PRK09303 158 LAHDLRTPLTAASLALETL 176 (380)
T ss_pred HhHhhcchHHHHHHHHHHH
Confidence 4445555555555444444
No 451
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=33.73 E-value=4.1e+02 Score=29.09 Aligned_cols=76 Identities=13% Similarity=0.294 Sum_probs=47.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh-----------hchhhhhhHHHHHHHHHHHHHHH
Q 021597 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR-----------GRSKLIGDEFQSVRDIVQTLESK 203 (310)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~-----------~dl~~ig~Dv~~v~~~V~~Le~K 203 (310)
++.-.+..-|.+.+..+..+++-+++|++.+....+.|+++.++.+ ..+.-|=.|++.=++.+..||..
T Consensus 178 q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e 257 (629)
T KOG0963|consen 178 QEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLERE 257 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555566666666666666555555555544444 44667777888888888888888
Q ss_pred HHHhhhh
Q 021597 204 LIEIEGK 210 (310)
Q Consensus 204 i~~ie~k 210 (310)
+..+...
T Consensus 258 ~e~L~~q 264 (629)
T KOG0963|consen 258 VEQLREQ 264 (629)
T ss_pred HHHHHHH
Confidence 7766643
No 452
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.61 E-value=2.5e+02 Score=26.63 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 021597 122 TRRSLSDACNSVARQLEDVYSSIS-----AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (310)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~-----~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (310)
+||.|+.+.+.+++.+.++++.=. .+=++|...++.+.+-...| -..++..+.+-+..+-.|+..|+.+
T Consensus 47 ~rr~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~kLg~v~~~v~dl~~~Q------A~~d~~tl~d~L~~~~~~~~~vKea 120 (230)
T cd07625 47 ARKQLSLEEADFGQKLIQLSVEETHHGLGNLYEKFGKVLTAVGDIDSIQ------ATVDMATLYDGLEWISRDAYVVKEA 120 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 021597 197 VQT 199 (310)
Q Consensus 197 V~~ 199 (310)
...
T Consensus 121 ltn 123 (230)
T cd07625 121 LTN 123 (230)
T ss_pred HHH
No 453
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=33.48 E-value=1.3e+02 Score=22.84 Aligned_cols=36 Identities=11% Similarity=0.360 Sum_probs=25.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 021597 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (310)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ 166 (310)
..+-.+.+.+|+.|-.-=.+++.|||.|...+.+..
T Consensus 13 ~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~ 48 (54)
T PF06825_consen 13 QQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLM 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444555567888888888889999999988887653
No 454
>PF04523 Herpes_U30: Herpes virus tegument protein U30; InterPro: IPR007611 This family is named after the human herpesvirus protein, but has been characterised in cytomegalovirus as UL47. Cytomegalovirus UL47 is a component of the tegument, which is a protein layer surrounding the viral capsid. UL47 co-precipitates with UL48 and UL69 tegument proteins, and the major capsid protein UL86. A UL47-containing complex is thought to be involved in the release of viral DNA from the disassembling virus particle [].; GO: 0019068 virion assembly
Probab=33.38 E-value=2.6e+02 Score=31.42 Aligned_cols=35 Identities=6% Similarity=0.225 Sum_probs=17.4
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 021597 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQL 151 (310)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhL 151 (310)
..+.|.=..+-++|..+-++-.++.+.++...+.|
T Consensus 693 ~~~~v~l~~f~~ti~~l~~~~~~l~~~l~~~~~~l 727 (887)
T PF04523_consen 693 QILSVSLPTFKSTIKALQDQCRELIDRLTQLSERL 727 (887)
T ss_pred cceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555554443333
No 455
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=33.36 E-value=1.5e+02 Score=22.78 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=28.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 021597 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
+..++.+|-.....-+.+.+.-......+.++..-++-+++.+-.|..|||
T Consensus 3 ~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kKiD 53 (57)
T PF02346_consen 3 IKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKKID 53 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444444444444444445556666667777777777777765
No 456
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=33.34 E-value=1.1e+02 Score=29.39 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=43.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-HHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 021597 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~-eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (310)
.+|-++...+...|+.|...-+-+...+.... .+.+.+++...++..++.+..+.++..++++..|=+-..+
T Consensus 180 ~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s 252 (322)
T COG0598 180 ERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLS 252 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666554444444444433 5666777777777777777777777777777665444433
No 457
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=33.32 E-value=4.1e+02 Score=24.82 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 021597 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv 190 (310)
.++....-+.+.++.+.+-+++-+...++-.+.++.+..++.++...-.......
T Consensus 154 ~~~~~~a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~ 208 (247)
T PF14661_consen 154 DLHELLARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQL 208 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667778888888888888888888888888888888877766654444444
No 458
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=33.31 E-value=1.1e+02 Score=31.98 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~ 174 (310)
..||+..+-+|+|+.-.. ++..||+|-...++...-|-+..++
T Consensus 117 i~~~~~el~~q~e~~ea~------e~e~~~erh~~h~~~le~i~~~l~n 159 (548)
T COG5665 117 IHDCLDELQKQLEQYEAQ------ENEEQTERHEFHIANLENILKKLQN 159 (548)
T ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999986543 8889999999998888777777664
No 459
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=33.27 E-value=96 Score=26.40 Aligned_cols=53 Identities=9% Similarity=0.240 Sum_probs=37.8
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 021597 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (310)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (310)
|+.|-.++..+...+.+..+-...++++|.++-+.=....-+-+.++..+..+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57777888888888887777777777777777666666666666666555544
No 460
>PRK09458 pspB phage shock protein B; Provisional
Probab=32.95 E-value=31 Score=27.82 Aligned_cols=44 Identities=7% Similarity=0.300 Sum_probs=28.5
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 021597 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (310)
Q Consensus 118 lMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde 164 (310)
|=|.||+.-+.. ++.+=++-=+.|...-+++.+||+.|.+=||.
T Consensus 24 LHY~sk~~~~~~---Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 24 LHYRSKRQGSQG---LSQEEQQRLAQLTEKAERMRERIQALEAILDA 67 (75)
T ss_pred HhhcccccCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 458888775542 33333333444555667899999999887774
No 461
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=32.91 E-value=3.4e+02 Score=24.40 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhh
Q 021597 194 RDIVQTLESKLIEIE 208 (310)
Q Consensus 194 ~~~V~~Le~Ki~~ie 208 (310)
-.-|..+|.+.+.+.
T Consensus 153 ~~~I~~lE~e~D~i~ 167 (216)
T TIGR00153 153 IKEIKDLEDEIDVMQ 167 (216)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334556666666544
No 462
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.85 E-value=1e+02 Score=24.47 Aligned_cols=57 Identities=12% Similarity=0.206 Sum_probs=35.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 021597 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (310)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~ 188 (310)
.++.+....+---|..||..+ ..+..++..+++|.+-.+..++++..-+.-|..++.
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i-~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAI-RELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555444 346668888888888888888887666666555543
No 463
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=32.82 E-value=43 Score=28.69 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=18.5
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHHHHHh
Q 021597 200 LESKLIEIEGKQDITTLGVKKLCDRARE 227 (310)
Q Consensus 200 Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~ 227 (310)
++.|+.=+|.| ..|+.=|..+|+-++.
T Consensus 23 ~~~k~~FL~sK-GLt~~EI~~al~~a~~ 49 (136)
T PF04695_consen 23 LEKKIAFLESK-GLTEEEIDEALGRAGS 49 (136)
T ss_dssp HHHHHHHHHHC-T--HHHHHHHHHHHT-
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHhcCC
Confidence 56777777777 7888889888876644
No 464
>PRK15396 murein lipoprotein; Provisional
Probab=32.80 E-value=1.7e+02 Score=23.62 Aligned_cols=7 Identities=0% Similarity=-0.073 Sum_probs=2.6
Q ss_pred HHhHHHH
Q 021597 213 ITTLGVK 219 (310)
Q Consensus 213 ~Tn~GV~ 219 (310)
++|.-++
T Consensus 64 raN~RlD 70 (78)
T PRK15396 64 RANQRLD 70 (78)
T ss_pred HHHHHHH
Confidence 3333333
No 465
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=32.44 E-value=3.8e+02 Score=29.18 Aligned_cols=58 Identities=12% Similarity=0.313 Sum_probs=37.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 021597 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~ 178 (310)
+.|..+-..-+.+..++.++++.|...++.+.++|+..-.++++..+=+..+.+++..
T Consensus 127 aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~ 184 (676)
T PRK05683 127 AARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQ 184 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777777777777777777777777777777765555444444444444445443
No 466
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=32.41 E-value=4.3e+02 Score=24.79 Aligned_cols=33 Identities=6% Similarity=0.202 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 021597 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (310)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqR 154 (310)
.++.+.+....+-|++.+.+..|..+|+..-++
T Consensus 113 e~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~ 145 (258)
T cd07655 113 ETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAA 145 (258)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777778888887777765433
No 467
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=32.30 E-value=1.9e+02 Score=27.42 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=13.2
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHH
Q 021597 118 MMFATRRSLSDACNSVARQLEDVYSS 143 (310)
Q Consensus 118 lMfVTKRnms~Av~sv~KqLeqVs~s 143 (310)
-|-..||+|+++-..+++.|..++.+
T Consensus 48 ~l~~~rk~la~~~~~~s~sl~~L~~~ 73 (218)
T cd07662 48 RMTRSHKSAADDYNRIGSSLYTLGTQ 73 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444555555555555555555444
No 468
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=32.23 E-value=3.3e+02 Score=25.25 Aligned_cols=68 Identities=21% Similarity=0.324 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHH--HHHH----HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 021597 143 SISAAQRQLSSKITSVDRDVNKIVEISQA--TQEE----VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~--i~~e----V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
.|..+..-|.+|..+++.+++++.+.++. .+++ ...++.+ ...-..++++.....+||.-+..||..+
T Consensus 31 ~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~LkrK-K~~E~ql~q~~~ql~nLEq~~~~iE~a~ 104 (191)
T PTZ00446 31 KNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILLKRK-KLYEQEIENILNNRLTLEDNMINLENMH 104 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667778888888888877776652 1111 2233333 3344455555555555665555555443
No 469
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=32.19 E-value=2.3e+02 Score=28.41 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQL 151 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhL 151 (310)
|.-..-++.+++..++-+.+|...|++|
T Consensus 21 r~Y~qKleel~~lQ~~C~ssI~~QkkrL 48 (330)
T PF07851_consen 21 RSYKQKLEELSKLQDKCSSSISHQKKRL 48 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666666554
No 470
>PHA03332 membrane glycoprotein; Provisional
Probab=32.18 E-value=4.7e+02 Score=30.76 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhhchhhhhhHHH----HHHHHHHHHHHH
Q 021597 167 EISQATQEEVTILRGRSKLIGDEFQ----SVRDIVQTLESK 203 (310)
Q Consensus 167 eis~~i~~eV~~v~~dl~~ig~Dv~----~v~~~V~~Le~K 203 (310)
.|+..+++.+.++.+.++...++++ .+..-+.+|..+
T Consensus 923 kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 923 KISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666665555543 334444444444
No 471
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=32.14 E-value=3.7e+02 Score=27.84 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=27.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhh
Q 021597 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD 161 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~k 161 (310)
+.|..+-.+-..++.++.++++.|...++.+...|+.--++
T Consensus 139 ~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~ 179 (507)
T PRK07739 139 GARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKE 179 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777777777777777777777777777666665443333
No 472
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=32.12 E-value=2.6e+02 Score=22.18 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=56.4
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 021597 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (310)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (310)
+-..+++.+.+.-..|.+..+-++.+-+++.+=...+...+++.+.++..+..=...|..++ +++.+..-+.++
T Consensus 2 ~s~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~-r~~~~D~~li~~ 75 (92)
T PF03908_consen 2 ASSDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLE-RRDKTDRILIFF 75 (92)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHH
Confidence 34678888999999999999999999999999999999999998888877766655555554 455555544443
No 473
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=32.09 E-value=6.3e+02 Score=27.87 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=40.1
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH--HHHHHhhhhhhHHhHHHHHHHHHHH
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE--SKLIEIEGKQDITTLGVKKLCDRAR 226 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le--~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (310)
|..-++++.+.+.+|-- .+.+-+++++.-......=.+.=+.+|+-+. .++..+-.+-..|+.-...||.|++
T Consensus 34 l~~h~~~~~~e~~~~ln---~~~n~~~~i~~~~~e~~~l~e~~r~~V~~~~~~fr~~k~Y~sv~~t~~~~s~l~n~V~ 108 (742)
T COG5173 34 LEHHDGNLSAEISKCLN---NILNISKRIYGLEEELKSLVEGKRRNVRVLKGFFRLVKDYRSVKMTCLAHSNLCNVVE 108 (742)
T ss_pred HHhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333 3333333333333333333344445555444 3566677788889999999999886
No 474
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=32.01 E-value=5.4e+02 Score=27.75 Aligned_cols=92 Identities=20% Similarity=0.297 Sum_probs=56.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh-------hhchhhhhhHHHHHHHHHHHHHHH
Q 021597 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL-------RGRSKLIGDEFQSVRDIVQTLESK 203 (310)
Q Consensus 131 ~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v-------~~dl~~ig~Dv~~v~~~V~~Le~K 203 (310)
+.+-.+++.+++-+..|. ++++.|+.++.|-.+++.=.--.+.-|..+ -+.+++...+++....-+..|-.+
T Consensus 274 ~~lk~~n~~l~e~i~ea~-k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~ 352 (622)
T COG5185 274 ANLKTQNDNLYEKIQEAM-KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSN 352 (622)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445666677777764 477888888777655544333333333333 344566666666666666677777
Q ss_pred HHHhh---hhhhHHhHHHHHHHH
Q 021597 204 LIEIE---GKQDITTLGVKKLCD 223 (310)
Q Consensus 204 i~~ie---~kQd~Tn~GV~~LC~ 223 (310)
++++. .||++...-+....+
T Consensus 353 ~d~L~~q~~kq~Is~e~fe~mn~ 375 (622)
T COG5185 353 IDELHKQLRKQGISTEQFELMNQ 375 (622)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHH
Confidence 77766 467777776666543
No 475
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=32.00 E-value=4.5e+02 Score=24.89 Aligned_cols=40 Identities=15% Similarity=0.410 Sum_probs=31.8
Q ss_pred cCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Q 021597 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKI 155 (310)
Q Consensus 113 ws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI 155 (310)
|||+. =|+|.+.+.|.++-++++.|+.-++.-|..+..-.
T Consensus 70 WsF~s---~~~qk~~~~~~~l~~~~~~~kqdi~t~~e~i~~ek 109 (209)
T COG5124 70 WSFKS---QTLQKLYDSSELLKKKIQEVKQDIATYKEEIDKEK 109 (209)
T ss_pred Eecch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 56654 48999999999999999999988877766665444
No 476
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=31.95 E-value=4.1e+02 Score=24.43 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=25.2
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
|.+||......|.+..+-.....+++..++.-.+++...+-..+.....++.++.
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555554444444444444444444444444444444444444444444433
No 477
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=31.87 E-value=2.9e+02 Score=22.77 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=18.8
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (310)
..+.||+++..+.+.+.+..++-++...+++.++.
T Consensus 22 ~qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~ 56 (110)
T PF10828_consen 22 YQSQRIDRLRAENKAQAQTIQQQEDANQELKAQLQ 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666655555555555544444433
No 478
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=31.81 E-value=2.9e+02 Score=22.75 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=22.0
Q ss_pred HHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhc
Q 021597 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELE 229 (310)
Q Consensus 177 ~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~ 229 (310)
..+...++.+...-+.++..+..-..+|...-....+... ...++.|+...+
T Consensus 75 ~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~-~~~l~~wl~~~e 126 (213)
T cd00176 75 EEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRD-ADDLEQWLEEKE 126 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3444444444444444444444444444443332222222 222666665443
No 479
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=31.78 E-value=2.2e+02 Score=27.79 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=13.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhH
Q 021597 133 VARQLEDVYSSISAAQRQLSSKITSVDRDV 162 (310)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~vD~kl 162 (310)
.-|-|||=-+.|.+..++|-+-++.+..|+
T Consensus 128 ~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~ 157 (254)
T KOG2196|consen 128 DQKRLDQELEFILSQQQELEDLLDPLETKL 157 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 480
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=31.78 E-value=2.8e+02 Score=22.53 Aligned_cols=81 Identities=11% Similarity=0.194 Sum_probs=54.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
....-..+++-.+.|......|..++...|.=+.+..+=...-......-...-.....++..++.-+..|...+..++.
T Consensus 23 ~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~ 102 (126)
T PF13863_consen 23 IERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888888888888887766655555555555555555666666666666666666665554
Q ss_pred h
Q 021597 210 K 210 (310)
Q Consensus 210 k 210 (310)
.
T Consensus 103 ~ 103 (126)
T PF13863_consen 103 K 103 (126)
T ss_pred H
Confidence 4
No 481
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.75 E-value=4e+02 Score=28.67 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=11.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021597 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (310)
Q Consensus 155 I~~vD~klde~~eis~~i~~eV~~v~~dl~~i 186 (310)
|+.+...++....-.+++.+++.+.+....++
T Consensus 344 i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l 375 (594)
T PF05667_consen 344 IEELEAEIKMLKSSLKQLEEELEEKEAENEEL 375 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 482
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=31.64 E-value=4.8e+02 Score=26.41 Aligned_cols=76 Identities=18% Similarity=0.297 Sum_probs=55.9
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--------HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 021597 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK--------ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (310)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqR--------I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (310)
|-.|+++ ....+.|++.+.-.++-.|+|-.| ++++|-=||+...-.-..-|++.+++.++.+-+.++.
T Consensus 210 ~~lr~~~----~~~~~~L~~~a~QfRaIQrrlL~r~kd~~p~~l~~L~~LLe~ty~~l~~~~d~~~~~~~~l~~a~~~L~ 285 (377)
T PF14728_consen 210 FELRQEL----KELEEELDERAQQFRAIQRRLLTRFKDKNPAPLDNLDTLLEGTYRQLIALADEIEELQANLKRAGASLS 285 (377)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4455544 445666677777777777887755 5788888888877777777889999999998888888
Q ss_pred HHHHHHHH
Q 021597 192 SVRDIVQT 199 (310)
Q Consensus 192 ~v~~~V~~ 199 (310)
..-+++..
T Consensus 286 ~~~~Ll~~ 293 (377)
T PF14728_consen 286 CATQLLIL 293 (377)
T ss_pred HHHHHHHH
Confidence 87766543
No 483
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=31.62 E-value=15 Score=33.05 Aligned_cols=14 Identities=36% Similarity=0.330 Sum_probs=9.3
Q ss_pred eeeEcCcccceeec
Q 021597 9 TFLVGAGILTSVLA 22 (310)
Q Consensus 9 ~ILvGAG~~GSvl~ 22 (310)
+++||||++|..++
T Consensus 4 V~IvGaG~aGl~~A 17 (356)
T PF01494_consen 4 VAIVGAGPAGLAAA 17 (356)
T ss_dssp EEEE--SHHHHHHH
T ss_pred EEEECCCHHHHHHH
Confidence 57999999987654
No 484
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=31.44 E-value=4.1e+02 Score=28.46 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=19.4
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021597 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (310)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (310)
-|.|.++||+.|-.++....-=......|...++..++
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~ 451 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLE 451 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666655554333333344444444443
No 485
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=31.44 E-value=5.1e+02 Score=25.43 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 169 s~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
.+.+++.++++++.|.++..+--.++..+.-+..|+...+++
T Consensus 223 ~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~ 264 (269)
T PF05278_consen 223 VKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGK 264 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344445566666666666666666666666666666655543
No 486
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=31.40 E-value=3.6e+02 Score=28.87 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=39.6
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 021597 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~ 178 (310)
+.|..+-..-.+++.++.++++.|...++.+..+|+.--+++++..+=...+-+++..
T Consensus 139 a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~ 196 (627)
T PRK06665 139 AERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVK 196 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888889999999999999988888888755444444433333333344443
No 487
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=31.38 E-value=15 Score=33.35 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=12.3
Q ss_pred eeeEcCcccceeecc
Q 021597 9 TFLVGAGILTSVLAK 23 (310)
Q Consensus 9 ~ILvGAG~~GSvl~k 23 (310)
+|+||+|.+|++++.
T Consensus 3 ~iIVGsG~~G~v~A~ 17 (296)
T PF00732_consen 3 YIIVGSGAGGSVVAS 17 (296)
T ss_dssp EEEES-SHHHHHHHH
T ss_pred EEEECcCHHHHHHHH
Confidence 589999999999775
No 488
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.37 E-value=4.4e+02 Score=24.67 Aligned_cols=108 Identities=11% Similarity=0.214 Sum_probs=69.7
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHH--HHHHHHHHhhhchhhhhhHHHH----
Q 021597 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ--ATQEEVTILRGRSKLIGDEFQS---- 192 (310)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~--~i~~eV~~v~~dl~~ig~Dv~~---- 192 (310)
++-.++.+.+.+..+-|.+-.-+..+..+|+.+-+|-...+....+... .+ .+.+++..++.+++.-.+++..
T Consensus 98 ~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~~~~~~~~-~k~~~s~~~~~K~~~K~~Ka~~e~~~~ve~ 176 (233)
T cd07649 98 FKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEGKTQQLEI-KLSNKTEEDIKKARRKSTQAGDDLMRCVDL 176 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999999999888876554322 11 1234455555555444433322
Q ss_pred HHHHHHHHHHHHHHhhhh-hhHHhHHHHHHHHHHHh
Q 021597 193 VRDIVQTLESKLIEIEGK-QDITTLGVKKLCDRARE 227 (310)
Q Consensus 193 v~~~V~~Le~Ki~~ie~k-Qd~Tn~GV~~LC~f~~~ 227 (310)
...+-..++.++..+-.. |.+-..-|..|.+++.+
T Consensus 177 y~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~ 212 (233)
T cd07649 177 YNQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQ 212 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333455555544433 66666666666665543
No 489
>KOG4670 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=31.25 E-value=27 Score=37.12 Aligned_cols=82 Identities=12% Similarity=0.174 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH--HhhhhhhHHhH
Q 021597 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI--EIEGKQDITTL 216 (310)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~--~ie~kQd~Tn~ 216 (310)
+.+-.+. .=.-|.|.|+.|+..++++.+..+.=--.+...+..+..|..|..... ...|+-=+- ....+|++.-+
T Consensus 368 R~win~t-iL~plvqeI~~vn~qfr~q~a~p~lqig~~sV~~lk~aAi~~~~~~~~--~p~lp~llpfLd~~snqeYlvq 444 (602)
T KOG4670|consen 368 RLWINLT-ILDPLVQEIRTVNQQFRQQQAQPQLQIGLISVMQLKVAAISEHRRLQG--LPKLPWLLPFLDRSSNQEYLVQ 444 (602)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccceechhhHHHHHHHHHHHhhhhcc--CCccchhhhhccCCccHHHHHH
Confidence 3343333 445688899999999997776665544556666666666655532211 111221111 34567999999
Q ss_pred HHHHHHH
Q 021597 217 GVKKLCD 223 (310)
Q Consensus 217 GV~~LC~ 223 (310)
-|+.||+
T Consensus 445 RIKeLaq 451 (602)
T KOG4670|consen 445 RIKELAQ 451 (602)
T ss_pred HHHHHhh
Confidence 9999997
No 490
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=31.20 E-value=3e+02 Score=34.15 Aligned_cols=85 Identities=25% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHH----HHHHHHHHHHHHHhHhhhhhhHHH-----------------HHHHHHHHHHHHHHhhhchhhh
Q 021597 128 DACNSVARQLEDV----YSSISAAQRQLSSKITSVDRDVNK-----------------IVEISQATQEEVTILRGRSKLI 186 (310)
Q Consensus 128 ~Av~sv~KqLeqV----s~sL~~aKrhLsqRI~~vD~klde-----------------~~eis~~i~~eV~~v~~dl~~i 186 (310)
..|+.+..||=++ |+.|.....||.+|-+++....++ |.|....|++. +.+.+++..+
T Consensus 901 ~~Vn~~a~qL~~~ghp~sd~I~~~Q~~Ln~rW~~l~~l~~qk~~~L~~a~~V~~f~~eC~et~~wi~dK-~~~~e~t~~~ 979 (2473)
T KOG0517|consen 901 AEVNDIARQLLEVGHPNSDEILARQDKLNQRWQQLRELVDQKKVALESALRVETFHLECEETRVWIRDK-TRVLESTDRL 979 (2473)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHhcccc
Q ss_pred hhH---HHHHHHHHHHHHHHHHHhhhhhhH
Q 021597 187 GDE---FQSVRDIVQTLESKLIEIEGKQDI 213 (310)
Q Consensus 187 g~D---v~~v~~~V~~Le~Ki~~ie~kQd~ 213 (310)
+.| |..++...++||.++.-||.|++.
T Consensus 980 ~~Dl~gv~alqrrL~~lErdl~aie~kv~~ 1009 (2473)
T KOG0517|consen 980 GNDLAGVMALQRRLQGLERDLAAIEAKVAA 1009 (2473)
T ss_pred CcchHHHHHHHHHHhhhhhHHHHHHHHHHH
No 491
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=31.12 E-value=1.8e+02 Score=29.48 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhh--hhh-hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021597 135 RQLEDVYSSISAAQRQLSSKITS--VDR-DVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (310)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~--vD~-klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v 193 (310)
++|.+=.+.|++-|+++++.|.. -+. ..++..+-.+.+++++.++...+..+..++..+
T Consensus 38 r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 38 RELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=31.01 E-value=3.5e+02 Score=23.38 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred hh---hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 021597 122 TR---RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (310)
Q Consensus 122 TK---Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (310)
|| |++.++...+.+++-+-...++. .++.-+...-..+-.. |...+++-..+.+.+.++..+|++..+..+.
T Consensus 33 lR~~~K~~~~~~~~~ae~~~~~~~~~a~---~~s~~~a~~~~~~~~~--ik~~v~~~~e~~q~~~~~l~~ei~~~~~~~s 107 (115)
T COG4980 33 LRKKLKKSGDALFELAEDKGTDILMIAD---KLSKESAETLKDQGGE--IKESVKKWKEDIQPEIERLKSEIEDLQEAIS 107 (115)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHhHHHHHHHHHhhHH--HHHHHHHhHhhcchhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 021597 199 TLESKLI 205 (310)
Q Consensus 199 ~Le~Ki~ 205 (310)
.++.++.
T Consensus 108 d~~k~~~ 114 (115)
T COG4980 108 DETKTES 114 (115)
T ss_pred HHHhhcc
No 493
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=30.96 E-value=3.2e+02 Score=22.92 Aligned_cols=88 Identities=10% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH---------HHHHHHHHHHHHHhhhchhhhhhHHHH-----
Q 021597 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI---------VEISQATQEEVTILRGRSKLIGDEFQS----- 192 (310)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~---------~eis~~i~~eV~~v~~dl~~ig~Dv~~----- 192 (310)
..+...+.++|+.-.+.+...-+.+.+.++.+-.+++.. .+..+.+++...+++....+...+++.
T Consensus 31 ~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~ 110 (158)
T PF03938_consen 31 SPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQEL 110 (158)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhhhHH
Q 021597 193 VRDIVQTLESKLIEIEGKQDIT 214 (310)
Q Consensus 193 v~~~V~~Le~Ki~~ie~kQd~T 214 (310)
++.+...+..-+..+-..+.++
T Consensus 111 ~~~i~~~i~~~v~~~a~~~g~~ 132 (158)
T PF03938_consen 111 LQPIQKKINKAVEEYAKENGYD 132 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHHHHHHcCCe
No 494
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=30.90 E-value=1.4e+02 Score=22.66 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHH--HHHHhHhhhhhhHH
Q 021597 129 ACNSVARQLEDVYSSISAAQR--QLSSKITSVDRDVN 163 (310)
Q Consensus 129 Av~sv~KqLeqVs~sL~~aKr--hLsqRI~~vD~kld 163 (310)
|+=+++-.+.+........+. ++.+||+.+..+||
T Consensus 53 aaLnla~e~~~~~~~~~~~~~~~~l~~~i~~L~~~le 89 (89)
T PF05164_consen 53 AALNLADELLKLKRELDELEELERLEERIEELNERLE 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhC
No 495
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.86 E-value=2.9e+02 Score=32.11 Aligned_cols=87 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 115 ~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
+-++++ ||+ -+.+|..++.-+-.-|+-.+..+++-=..++....|. +.+.+++.+.+-.++.|..+++...
T Consensus 668 l~ei~~--~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El----~~~~~~i~~~~p~i~~i~r~l~~~e 738 (1141)
T KOG0018|consen 668 LKEIQK--RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELEL----QRTESEIDEFGPEISEIKRKLQNRE 738 (1141)
T ss_pred HHHHHH--hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhCchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhh
Q 021597 195 DIVQTLESKLIEIEGK 210 (310)
Q Consensus 195 ~~V~~Le~Ki~~ie~k 210 (310)
..+..|+.++..+|.+
T Consensus 739 ~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 739 GEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHHHH
No 496
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=30.84 E-value=1.2e+02 Score=26.97 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=0.0
Q ss_pred ecccCcCchhhhhhhh---HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 021597 110 WKGWKLPDMMFATRRS---LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (310)
Q Consensus 110 WKGws~SDlMfVTKRn---ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~i 186 (310)
||--|+++|--+|--. +.+..-=-.++|+..-..|..-|..|..+|. ...+.++++.....+.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yM~~~ql~~fr~~L~~~r~eL~~~i~----------~~~~~~~~~~~~~~D~~D~a 76 (151)
T PRK10778 7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFKRILEAWRNQLRDEVD----------RTVTHMQDEAANFPDPVDRA 76 (151)
T ss_pred cccccchhccccccccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhcccccCCCHHHHH
Q ss_pred hhHHHHHHHH--HHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 021597 187 GDEFQSVRDI--VQTLESKLIEIEGKQDITTLGVKKLCD 223 (310)
Q Consensus 187 g~Dv~~v~~~--V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (310)
..+.+.-... ...-...|..|+.....-..|-|-.|+
T Consensus 77 ~~~~~~~~~l~~~~r~~~~L~~I~~AL~Ri~~gtYG~Ce 115 (151)
T PRK10778 77 AQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCE 115 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceec
No 497
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.71 E-value=2.3e+02 Score=27.59 Aligned_cols=97 Identities=10% Similarity=0.169 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hHhhhhhh-HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 021597 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSS-KITSVDRD-VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (310)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsq-RI~~vD~k-lde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V 197 (310)
+++| ++.--..+-.+=+.+.+--.-..+|..+ -.+-.+.. ++.+.++.++=.+++..+..|+-....-+..+-.||
T Consensus 126 ~~a~--~s~~s~~~~~~~~~~~~~~~~~~~~~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV 203 (269)
T KOG0811|consen 126 MVAR--GSQNSQQLDEESPRVDELSNNGSQSQQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLV 203 (269)
T ss_pred cccc--ccccchhhhhhhhhhhhhhccchhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhhHHhHHH
Q 021597 198 QTLESKLIEIEGKQDITTLGV 218 (310)
Q Consensus 198 ~~Le~Ki~~ie~kQd~Tn~GV 218 (310)
..=+..+++||++-+.|..-|
T Consensus 204 ~eQG~~VDsIe~nve~a~~nv 224 (269)
T KOG0811|consen 204 HEQGELVDSIEANVENASVNV 224 (269)
T ss_pred HHhhhHHhHHHHHHHHHHHHH
No 498
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=30.63 E-value=1.4e+02 Score=26.72 Aligned_cols=64 Identities=17% Similarity=0.322 Sum_probs=0.0
Q ss_pred cCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 021597 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (310)
Q Consensus 113 ws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~ 177 (310)
+.++|.+|-.-+.+.++|..+-..+. +.+......++|.+|++.+..+|+.+.++-..|.++..
T Consensus 25 i~~~~~v~L~P~~v~~~v~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~ 88 (180)
T PF04678_consen 25 IALSDSVYLRPKQVKEAVHRLLPLLN-VEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKAE 88 (180)
T ss_pred EEECCeeeECHHHHHHHHHHHhcccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=30.52 E-value=3.2e+02 Score=25.03 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH-HHHHHHHhhhchhhhhhHHHHHHH
Q 021597 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA-TQEEVTILRGRSKLIGDEFQSVRD 195 (310)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~-i~~eV~~v~~dl~~ig~Dv~~v~~ 195 (310)
|.|---||.|+++...+++.+..+++.=..+ -|++-+.++.+--+...++... -.+|...+.+.|...-..+.+|+.
T Consensus 36 e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~--~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~ 113 (224)
T cd07623 36 ESLVNHRKELALNTGSFAKSAAMLSNCEEHT--SLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKD 113 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 021597 196 IVQ 198 (310)
Q Consensus 196 ~V~ 198 (310)
++.
T Consensus 114 ~f~ 116 (224)
T cd07623 114 VFH 116 (224)
T ss_pred HHH
No 500
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=30.46 E-value=3.8e+02 Score=28.21 Aligned_cols=88 Identities=9% Similarity=0.181 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhHhhhhhhHHH-----HHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 122 TRRSLSDACNSVA--RQLEDVYSSISAAQRQLSSKITSVDRDVNK-----IVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 122 TKRnms~Av~sv~--KqLeqVs~sL~~aKrhLsqRI~~vD~klde-----~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
++..+..+..... ..-|........+|.+|..-|.++.++|++ ..+-.+.+++.+.+.++-|. .+|.+.++
T Consensus 501 s~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~--~~~~~~i~ 578 (627)
T PRK00290 501 SDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALK--GEDKEAIK 578 (627)
T ss_pred CHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHh--cCCHHHHH
Q ss_pred HHHHHHHHHHHHhhhhh
Q 021597 195 DIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQ 211 (310)
+....|+.++..++.++
T Consensus 579 ~k~~~L~~~~~~~~~~~ 595 (627)
T PRK00290 579 AKTEELTQASQKLGEAM 595 (627)
T ss_pred HHHHHHHHHHHHHHHHH
Done!