Query 021597
Match_columns 310
No_of_seqs 62 out of 64
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 06:27:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ba2_A D12_ORF131, hypothetica 94.3 0.11 3.6E-06 41.4 6.5 77 120-208 8-84 (85)
2 2no2_A HIP-I, huntingtin-inter 93.4 1.1 3.6E-05 36.5 11.0 79 131-209 11-96 (107)
3 1m1j_B Fibrinogen beta chain; 90.1 2.4 8.1E-05 42.3 11.5 97 115-211 87-191 (464)
4 3mq9_A Bone marrow stromal ant 89.6 4.3 0.00015 38.4 12.6 77 125-202 356-432 (471)
5 3oja_A Leucine-rich immune mol 88.9 2.5 8.4E-05 40.3 10.3 66 158-223 412-477 (487)
6 3g67_A Methyl-accepting chemot 88.8 4.2 0.00014 36.2 11.2 39 126-164 5-43 (213)
7 3g67_A Methyl-accepting chemot 88.8 7 0.00024 34.8 12.6 62 133-194 5-66 (213)
8 1deq_A Fibrinogen (alpha chain 88.1 3.9 0.00013 40.1 11.2 94 115-208 54-154 (390)
9 3tnu_B Keratin, type II cytosk 87.6 1.3 4.5E-05 36.3 6.6 52 153-207 43-94 (129)
10 3ghg_A Fibrinogen alpha chain; 87.4 5.3 0.00018 40.8 12.0 95 116-210 52-153 (562)
11 3trt_A Vimentin; cytoskeleton, 87.0 5 0.00017 29.8 9.0 70 125-194 6-76 (77)
12 3tnu_A Keratin, type I cytoske 85.9 1.3 4.5E-05 36.4 5.7 67 138-207 27-96 (131)
13 3na7_A HP0958; flagellar bioge 85.9 4.4 0.00015 36.3 9.6 28 184-211 93-120 (256)
14 3okq_A BUD site selection prot 84.8 14 0.00046 31.8 11.6 77 143-219 11-107 (141)
15 2qyw_A Vesicle transport throu 83.6 2.4 8.2E-05 33.7 6.1 59 118-179 16-75 (102)
16 3onj_A T-snare VTI1; helix, HA 83.5 3.7 0.00013 32.2 7.1 53 124-179 8-60 (97)
17 2akf_A Coronin-1A; coiled coil 83.4 1.3 4.6E-05 29.1 3.7 29 183-211 1-29 (32)
18 2yo3_A General control protein 83.3 2.2 7.7E-05 39.9 6.7 58 137-194 200-257 (268)
19 3oja_B Anopheles plasmodium-re 83.3 9.1 0.00031 37.0 11.2 37 123-159 458-494 (597)
20 4dnd_A Syntaxin-10, SYN10; str 83.1 3 0.0001 34.7 6.8 59 122-182 68-127 (130)
21 1vcs_A Vesicle transport throu 81.2 1.8 6.2E-05 34.4 4.6 62 116-180 4-65 (102)
22 1c1g_A Tropomyosin; contractIl 80.9 22 0.00074 29.2 14.1 34 174-207 69-102 (284)
23 3gwk_C SAG1039, putative uncha 80.7 15 0.00052 27.2 10.5 70 136-205 12-93 (98)
24 2jee_A YIIU; FTSZ, septum, coi 80.5 12 0.00041 29.3 8.9 69 154-222 7-75 (81)
25 3a7p_A Autophagy protein 16; c 80.4 22 0.00076 30.8 11.3 70 129-213 59-129 (152)
26 3hnw_A Uncharacterized protein 80.3 17 0.00059 30.4 10.5 64 150-213 72-135 (138)
27 3mq9_A Bone marrow stromal ant 80.1 18 0.00061 34.2 11.8 42 124-165 369-416 (471)
28 1deq_A Fibrinogen (alpha chain 79.8 14 0.00048 36.3 11.0 82 140-221 54-139 (390)
29 1m1j_A Fibrinogen alpha subuni 79.8 17 0.00057 36.7 11.7 99 112-210 49-154 (491)
30 1kmi_Z CHEZ, chemotaxis protei 79.6 12 0.0004 33.5 9.8 42 198-239 126-170 (214)
31 3zx6_A HAMP, methyl-accepting 79.5 39 0.0013 31.2 14.3 9 61-69 11-19 (341)
32 4abx_A DNA repair protein RECN 78.2 5.7 0.0002 33.6 7.0 92 114-209 67-164 (175)
33 1gl2_D Syntaxin 8, vesicle tra 77.8 6.5 0.00022 28.4 6.3 41 154-194 10-50 (65)
34 3zx6_A HAMP, methyl-accepting 77.7 44 0.0015 30.8 14.2 13 63-75 6-18 (341)
35 3u59_A Tropomyosin beta chain; 77.0 25 0.00084 27.6 12.1 86 144-229 14-99 (101)
36 1m1j_B Fibrinogen beta chain; 76.8 26 0.00088 35.0 12.2 42 141-182 88-129 (464)
37 3ghg_A Fibrinogen alpha chain; 76.6 16 0.00054 37.4 10.6 73 140-212 51-127 (562)
38 1m1j_C Fibrinogen gamma chain; 76.5 21 0.00071 35.0 11.2 41 167-207 84-124 (409)
39 3u59_A Tropomyosin beta chain; 76.1 26 0.00089 27.4 10.5 68 134-201 32-99 (101)
40 1fxk_C Protein (prefoldin); ar 76.0 5 0.00017 32.3 5.8 40 145-184 87-126 (133)
41 1ic2_A Tropomyosin alpha chain 75.7 19 0.00065 27.2 8.6 59 150-208 17-75 (81)
42 1n7s_D SNAP-25A; neuronal snar 75.3 18 0.0006 26.1 8.0 53 152-218 9-61 (66)
43 3c9i_A Tail needle protein GP2 74.9 9.2 0.00031 35.1 7.7 59 152-210 83-141 (242)
44 4ioe_A Secreted protein ESXB; 74.4 23 0.00077 25.8 9.2 31 129-159 13-43 (93)
45 3m0a_A TNF receptor-associated 74.2 17 0.00059 26.1 7.8 58 151-208 3-60 (66)
46 3u1c_A Tropomyosin alpha-1 cha 74.0 31 0.001 27.2 10.7 81 147-227 17-97 (101)
47 2nps_D Syntaxin-6; vesicle fus 73.7 13 0.00044 28.2 7.2 40 184-223 36-75 (82)
48 3htk_A Structural maintenance 73.5 11 0.00039 26.5 6.5 43 158-200 10-52 (60)
49 1sfc_D Protein (SNAP-25B), pro 73.2 15 0.00052 28.1 7.6 46 176-221 38-83 (87)
50 1l8d_A DNA double-strand break 72.6 31 0.0011 26.7 10.0 35 130-164 5-42 (112)
51 2l5g_B Putative uncharacterize 71.8 3.1 0.0001 29.2 3.0 28 147-174 3-30 (42)
52 1sfc_D Protein (SNAP-25B), pro 71.4 24 0.00081 27.0 8.4 59 150-208 26-84 (87)
53 1ic2_A Tropomyosin alpha chain 71.1 31 0.0011 26.0 9.6 65 151-215 4-68 (81)
54 4ioe_A Secreted protein ESXB; 70.4 28 0.00097 25.3 10.2 59 135-193 12-75 (93)
55 2nps_D Syntaxin-6; vesicle fus 70.3 9.6 0.00033 28.9 5.8 57 153-209 19-75 (82)
56 3zbh_A ESXA; unknown function, 70.2 29 0.00099 25.3 11.1 29 136-164 13-41 (99)
57 2zdi_C Prefoldin subunit alpha 69.4 7.4 0.00025 32.2 5.4 40 145-184 97-136 (151)
58 1gl2_D Syntaxin 8, vesicle tra 68.2 12 0.00039 27.0 5.6 50 171-220 13-62 (65)
59 2xzr_A Immunoglobulin-binding 67.7 50 0.0017 27.1 10.5 70 126-195 32-104 (114)
60 3ghg_C Fibrinogen gamma chain; 67.4 39 0.0013 33.3 10.8 91 116-206 26-123 (411)
61 3swy_A Cyclic nucleotide-gated 67.0 11 0.00038 26.7 5.1 36 126-161 10-45 (46)
62 3htk_A Structural maintenance 65.5 26 0.0009 24.5 7.0 47 136-182 9-55 (60)
63 1jth_B Syntaxin 1A; coiled-coi 65.1 36 0.0012 25.2 8.0 58 173-230 9-70 (77)
64 2vs0_A Virulence factor ESXA; 64.6 38 0.0013 24.6 8.4 29 136-164 10-38 (97)
65 3swf_A CGMP-gated cation chann 64.6 19 0.00066 27.8 6.4 39 126-164 12-50 (74)
66 3zbh_A ESXA; unknown function, 64.4 39 0.0013 24.6 10.3 76 129-204 13-93 (99)
67 3efg_A Protein SLYX homolog; x 63.5 12 0.0004 28.7 5.1 54 149-209 10-63 (78)
68 3na7_A HP0958; flagellar bioge 63.1 82 0.0028 28.0 12.9 40 152-191 103-142 (256)
69 2dfs_A Myosin-5A; myosin-V, in 62.1 53 0.0018 35.6 11.6 15 153-167 984-998 (1080)
70 2nps_B Syntaxin 13, vesicle-as 61.6 36 0.0012 24.9 7.4 54 174-227 6-63 (71)
71 3ghg_C Fibrinogen gamma chain; 61.2 1E+02 0.0036 30.2 12.5 92 139-230 24-133 (411)
72 3o0z_A RHO-associated protein 60.8 86 0.0029 27.4 11.5 78 124-208 58-138 (168)
73 3cvf_A Homer-3, homer protein 60.7 36 0.0012 26.4 7.4 60 128-208 6-65 (79)
74 2v71_A Nuclear distribution pr 60.5 91 0.0031 27.6 13.6 99 122-220 29-134 (189)
75 2xdj_A Uncharacterized protein 60.4 40 0.0014 26.1 7.7 26 171-196 31-56 (83)
76 3ci9_A Heat shock factor-bindi 60.0 20 0.00067 25.5 5.3 41 125-165 3-43 (48)
77 3gwk_C SAG1039, putative uncha 59.8 49 0.0017 24.3 9.8 18 159-176 61-78 (98)
78 1n7s_D SNAP-25A; neuronal snar 59.2 45 0.0015 23.9 7.4 48 133-184 8-55 (66)
79 1m1j_A Fibrinogen alpha subuni 58.9 46 0.0016 33.6 9.6 46 147-192 112-157 (491)
80 4i0x_B ESAT-6-like protein MAB 58.9 57 0.0019 24.8 8.9 34 135-168 14-47 (103)
81 1wle_A Seryl-tRNA synthetase; 58.8 37 0.0013 33.8 9.1 29 143-174 74-102 (501)
82 3u1c_A Tropomyosin alpha-1 cha 58.1 66 0.0023 25.3 12.0 52 149-200 47-98 (101)
83 3fav_B ESAT-6, 6 kDa early sec 58.0 35 0.0012 25.0 6.8 28 137-164 10-37 (94)
84 2jee_A YIIU; FTSZ, septum, coi 57.7 66 0.0023 25.1 8.6 53 154-206 28-80 (81)
85 3kkj_A Amine oxidase, flavin-c 57.4 2.2 7.5E-05 33.0 0.0 14 9-22 5-18 (336)
86 3zcc_A HAMP, osmolarity sensor 57.3 48 0.0016 23.4 8.1 24 166-189 65-88 (114)
87 2b9c_A Striated-muscle alpha t 57.2 62 0.0021 27.3 9.0 68 153-220 52-119 (147)
88 3cve_A Homer protein homolog 1 57.1 55 0.0019 25.0 7.8 46 149-194 17-62 (72)
89 3s84_A Apolipoprotein A-IV; fo 56.8 57 0.0019 29.9 9.3 26 166-191 208-233 (273)
90 4fla_A Regulation of nuclear P 56.6 79 0.0027 26.8 9.6 68 139-206 72-146 (152)
91 3fav_A ESAT-6-like protein ESX 56.5 49 0.0017 24.7 7.6 65 137-201 12-88 (101)
92 2w83_C C-JUN-amino-terminal ki 56.2 69 0.0024 24.9 8.4 65 124-209 5-72 (77)
93 3gp4_A Transcriptional regulat 55.2 66 0.0023 26.3 8.7 25 185-209 92-116 (142)
94 3fx7_A Putative uncharacterize 54.5 81 0.0028 25.2 9.0 73 130-202 11-84 (94)
95 4dnd_A Syntaxin-10, SYN10; str 54.2 91 0.0031 25.7 10.3 95 108-209 18-126 (130)
96 3a7p_A Autophagy protein 16; c 54.1 96 0.0033 26.8 9.7 21 190-210 98-118 (152)
97 1sfc_B Protein (syntaxin 1A), 53.8 68 0.0023 24.1 8.4 55 172-226 19-77 (83)
98 3cvf_A Homer-3, homer protein 53.8 64 0.0022 25.0 7.8 52 123-174 22-73 (79)
99 4h22_A Leucine-rich repeat fli 53.5 57 0.002 26.6 7.7 59 147-205 24-82 (103)
100 3m0d_C TNF receptor-associated 53.2 57 0.002 23.8 7.1 36 173-208 26-61 (65)
101 3nmd_A CGMP dependent protein 52.9 42 0.0014 25.8 6.5 50 130-180 15-67 (72)
102 1m1j_C Fibrinogen gamma chain; 52.5 1.8E+02 0.006 28.4 13.0 49 182-230 85-133 (409)
103 1i84_S Smooth muscle myosin he 51.6 30 0.001 37.4 7.6 24 24-47 652-675 (1184)
104 2w83_C C-JUN-amino-terminal ki 51.3 84 0.0029 24.4 9.0 18 122-139 24-41 (77)
105 2zqm_A Prefoldin beta subunit 50.4 32 0.0011 26.5 5.8 15 61-75 25-39 (117)
106 1qu7_A Methyl-accepting chemot 50.1 1.3E+02 0.0045 26.3 12.5 13 63-75 73-85 (227)
107 3plt_A Sphingolipid long chain 50.0 1.5E+02 0.0053 27.1 12.0 84 127-214 61-150 (234)
108 2v66_B Nuclear distribution pr 49.9 1.1E+02 0.0036 25.1 9.8 69 124-196 6-74 (111)
109 2v66_B Nuclear distribution pr 49.7 1.1E+02 0.0036 25.1 11.3 74 148-221 5-82 (111)
110 1l4a_D S-SNAP25 fusion protein 49.2 58 0.002 25.0 6.9 38 184-221 47-84 (87)
111 1l4a_D S-SNAP25 fusion protein 49.1 41 0.0014 25.9 6.1 58 149-206 26-83 (87)
112 3v86_A De novo design helix; c 48.9 10 0.00035 23.9 2.0 23 171-193 4-26 (27)
113 1ses_A Seryl-tRNA synthetase; 48.7 53 0.0018 31.7 8.1 65 144-221 33-97 (421)
114 2c5k_T Syntaxin TLG1, T-snare 47.9 60 0.0021 25.5 7.0 25 186-210 66-90 (95)
115 2q6q_A Spindle POLE BODY compo 47.8 79 0.0027 24.3 7.2 57 148-204 5-61 (74)
116 3hnw_A Uncharacterized protein 47.4 1.1E+02 0.0036 25.6 8.8 48 159-206 88-135 (138)
117 3qne_A Seryl-tRNA synthetase, 47.2 35 0.0012 34.0 6.7 63 144-210 38-100 (485)
118 1q08_A Zn(II)-responsive regul 47.0 40 0.0014 25.1 5.6 61 150-210 7-75 (99)
119 3ol1_A Vimentin; structural ge 46.4 1.1E+02 0.0039 24.5 11.0 72 142-213 30-101 (119)
120 3vkg_A Dynein heavy chain, cyt 45.8 1.1E+02 0.0039 37.2 11.6 58 126-183 2012-2072(3245)
121 3b5n_D Protein transport prote 45.8 82 0.0028 23.0 7.0 32 185-216 28-59 (64)
122 3haj_A Human pacsin2 F-BAR; pa 45.7 1.9E+02 0.0067 27.8 11.6 38 120-157 128-165 (486)
123 3vkg_A Dynein heavy chain, cyt 45.5 87 0.003 38.2 10.6 38 154-191 2015-2052(3245)
124 2nrj_A HBL B protein; enteroto 45.1 1.4E+02 0.0049 28.0 10.3 35 147-181 117-151 (346)
125 1x79_B RAB GTPase binding effe 44.9 1.3E+02 0.0044 24.7 9.1 65 136-200 7-71 (112)
126 1n7s_B Syntaxin 1A; neuronal s 44.7 86 0.0029 22.6 7.5 50 173-222 11-64 (68)
127 3gp4_A Transcriptional regulat 44.6 79 0.0027 25.8 7.5 25 92-118 39-65 (142)
128 2xdj_A Uncharacterized protein 44.4 78 0.0027 24.5 7.0 54 152-212 5-58 (83)
129 3mts_A Histone-lysine N-methyl 43.6 16 0.00053 26.8 2.7 22 106-127 18-39 (64)
130 2c5k_T Syntaxin TLG1, T-snare 43.6 42 0.0014 26.4 5.4 55 121-182 36-90 (95)
131 2dq0_A Seryl-tRNA synthetase; 42.6 56 0.0019 31.9 7.3 62 144-209 36-97 (455)
132 2pnv_A Small conductance calci 42.4 44 0.0015 23.2 4.7 30 139-168 9-38 (43)
133 3ghg_B Fibrinogen beta chain; 42.3 1.5E+02 0.0052 29.6 10.3 35 115-149 82-116 (461)
134 1jcd_A Major outer membrane li 42.1 54 0.0018 23.6 5.3 10 175-184 26-35 (52)
135 3hd7_A Vesicle-associated memb 42.1 1.1E+02 0.0037 23.6 7.5 23 136-158 6-28 (91)
136 1gl2_B Syntaxin 7; membrane pr 42.0 70 0.0024 23.0 6.1 43 174-216 9-51 (65)
137 1sum_B Phosphate transport sys 41.8 1.6E+02 0.0055 25.0 9.6 79 123-201 13-108 (235)
138 1fxk_A Prefoldin; archaeal pro 41.2 54 0.0019 24.9 5.7 15 61-75 20-34 (107)
139 1t3j_A Mitofusin 1; coiled coi 40.9 89 0.003 25.1 7.0 20 146-165 47-66 (96)
140 2j69_A Bacterial dynamin-like 40.7 2E+02 0.0068 29.2 11.2 79 126-210 594-684 (695)
141 1wt6_A Myotonin-protein kinase 40.5 1.1E+02 0.0038 24.0 7.2 24 170-193 27-50 (81)
142 3b5n_B Protein SSO1; snare com 39.9 1E+02 0.0036 22.3 8.1 52 173-224 9-64 (69)
143 3ghg_B Fibrinogen beta chain; 39.2 2.1E+02 0.0073 28.6 10.9 11 65-75 19-29 (461)
144 2i0m_A Phosphate transport sys 39.1 1.2E+02 0.0042 25.1 8.0 44 123-166 13-56 (216)
145 4hpq_C ATG17, KLTH0D15642P; au 38.8 2.7E+02 0.0092 27.2 11.4 6 26-31 120-125 (413)
146 3gpv_A Transcriptional regulat 38.7 72 0.0025 26.1 6.4 24 185-208 106-129 (148)
147 2dq3_A Seryl-tRNA synthetase; 38.5 52 0.0018 31.7 6.3 63 144-210 35-97 (425)
148 4abm_A Charged multivesicular 38.2 1.3E+02 0.0045 22.9 8.9 65 143-208 10-79 (79)
149 2xz3_A Maltose ABC transporter 38.0 1.6E+02 0.0053 27.6 9.4 39 183-221 381-419 (463)
150 3f6n_A Virion-associated prote 37.8 65 0.0022 27.2 5.9 31 162-192 4-34 (129)
151 3hd7_A Vesicle-associated memb 37.4 1.4E+02 0.0047 22.9 9.8 41 154-194 6-46 (91)
152 1xwj_B Talin, metavinculin; ce 37.0 25 0.00084 21.7 2.5 24 122-145 2-25 (26)
153 2dq0_A Seryl-tRNA synthetase; 36.9 1.6E+02 0.0055 28.7 9.6 88 135-222 9-103 (455)
154 4ack_A TSSL; protein transport 36.6 1E+02 0.0034 27.5 7.2 65 162-227 7-71 (185)
155 3e7k_A TRPM7 channel; coiled-c 36.5 1.3E+02 0.0043 22.2 6.9 45 127-175 8-52 (56)
156 3tul_A Cell invasion protein S 35.9 65 0.0022 28.0 5.8 21 192-212 104-124 (158)
157 3lss_A Seryl-tRNA synthetase; 35.8 1.1E+02 0.0038 30.4 8.3 27 143-172 41-67 (484)
158 3hd7_B Syntaxin-1A; membrane p 35.5 1.4E+02 0.0048 23.5 7.4 69 164-232 11-83 (109)
159 2zqm_A Prefoldin beta subunit 35.5 1.1E+02 0.0037 23.4 6.7 18 123-140 65-82 (117)
160 1fxk_A Prefoldin; archaeal pro 35.5 96 0.0033 23.4 6.3 19 123-141 60-78 (107)
161 4ev6_A Magnesium transport pro 34.7 2.3E+02 0.0077 25.8 9.7 38 125-162 168-206 (339)
162 3oz2_A Digeranylgeranylglycero 34.4 8.4 0.00029 33.6 0.0 14 9-22 7-20 (397)
163 1t3j_A Mitofusin 1; coiled coi 34.2 1.4E+02 0.0047 24.0 7.0 17 139-155 29-45 (96)
164 2qyw_A Vesicle transport throu 34.1 1.4E+02 0.0047 23.4 7.1 61 134-194 14-76 (102)
165 3ci9_A Heat shock factor-bindi 33.7 74 0.0025 22.5 4.8 38 125-162 6-47 (48)
166 2ke4_A CDC42-interacting prote 33.4 92 0.0031 24.7 5.9 60 148-209 17-76 (98)
167 2d4y_A HAP1, flagellar HOOK-as 33.2 2.8E+02 0.0096 26.5 10.5 43 121-163 64-106 (463)
168 1d7m_A Cortexillin I; coiled-c 33.2 1.9E+02 0.0065 23.3 7.7 30 126-155 2-34 (101)
169 1fzc_A Fibrin; blood coagulati 33.0 43 0.0015 26.6 3.8 28 149-176 3-30 (87)
170 4aj5_A SKA1, spindle and kinet 32.9 1.9E+02 0.0064 23.1 10.1 45 179-227 35-79 (91)
171 3edv_A Spectrin beta chain, br 32.8 2.1E+02 0.0071 24.9 8.8 57 148-205 187-243 (323)
172 1go4_E MAD1 (mitotic arrest de 32.3 38 0.0013 27.3 3.6 38 172-209 10-47 (100)
173 1x8y_A Lamin A/C; structural p 31.9 1.7E+02 0.0058 22.3 7.3 59 140-205 15-73 (86)
174 4g2k_A General control protein 31.9 1.1E+02 0.0037 25.8 6.3 31 174-204 21-51 (125)
175 1t72_A Phosphate transport sys 31.9 2.2E+02 0.0076 23.6 9.1 79 123-201 17-112 (227)
176 2a01_A Apolipoprotein A-I; fou 31.8 2.3E+02 0.0079 25.0 9.0 34 157-190 92-126 (243)
177 1qu7_A Methyl-accepting chemot 31.6 2.6E+02 0.009 24.4 11.6 14 62-75 55-68 (227)
178 2ocy_A RAB guanine nucleotide 31.2 1.8E+02 0.0062 24.9 7.9 63 125-187 76-149 (154)
179 2p22_A Suppressor protein STP2 31.1 1.1E+02 0.0037 26.8 6.5 52 116-167 33-84 (174)
180 3oja_A Leucine-rich immune mol 31.0 1.6E+02 0.0055 27.7 8.3 9 100-108 342-350 (487)
181 3b5n_A Synaptobrevin homolog 1 30.8 1.4E+02 0.0049 21.1 7.2 22 137-158 4-25 (61)
182 4hb9_A Similarities with proba 30.6 11 0.00036 33.4 0.0 13 9-21 4-16 (412)
183 1wyy_A E2 glycoprotein; membra 30.4 28 0.00094 30.1 2.5 29 176-204 111-139 (149)
184 2bsg_A Fibritin; viral protein 30.0 55 0.0019 33.0 5.0 85 124-210 43-130 (487)
185 1mqs_A SLY1 protein, SLY1P; SM 30.0 2.4E+02 0.0083 28.4 9.8 81 116-197 329-444 (671)
186 3mov_A Lamin-B1; LMNB1, B-type 29.6 2E+02 0.0069 22.5 7.4 69 130-205 14-82 (95)
187 3rkg_A Magnesium transporter M 29.4 1.8E+02 0.006 26.7 8.0 38 126-165 132-169 (261)
188 3u06_A Protein claret segregat 29.4 86 0.0029 30.3 6.2 32 144-175 8-39 (412)
189 1aq5_A Matrilin-1, CMP, cartil 29.3 1E+02 0.0035 21.9 4.9 9 151-159 35-43 (47)
190 2rft_B Influenza B hemagglutin 29.2 25 0.00086 31.0 2.1 47 121-167 36-89 (176)
191 1mqm_B Hemagglutinin HA2 chain 29.2 16 0.00053 33.3 0.8 47 121-167 36-89 (221)
192 3qne_A Seryl-tRNA synthetase, 29.0 2.6E+02 0.0089 27.8 9.6 88 136-223 14-106 (485)
193 2v71_A Nuclear distribution pr 28.9 3E+02 0.01 24.3 14.5 93 134-226 30-133 (189)
194 1xwm_A PHOU, phosphate uptake 28.9 2.5E+02 0.0085 23.3 9.4 44 123-166 13-56 (217)
195 2dfs_A Myosin-5A; myosin-V, in 28.8 4.8E+02 0.016 28.3 12.3 83 126-208 958-1050(1080)
196 3swk_A Vimentin; cytoskeleton, 28.8 2E+02 0.0067 22.0 10.5 67 145-211 13-79 (86)
197 3hh0_A Transcriptional regulat 28.7 1.7E+02 0.0057 24.0 7.0 39 184-222 90-128 (146)
198 1ses_A Seryl-tRNA synthetase; 28.4 2.8E+02 0.0096 26.6 9.6 22 136-157 39-60 (421)
199 2wrg_I Hemagglutinin HA2 chain 28.3 42 0.0014 30.6 3.4 46 121-166 36-88 (222)
200 3l39_A Putative PHOU-like phos 28.3 2.8E+02 0.0097 23.9 8.8 76 133-208 99-178 (227)
201 1avo_B 11S regulator; proteaso 28.3 2.6E+02 0.009 23.3 8.5 82 124-205 6-87 (140)
202 3c9i_A Tail needle protein GP2 28.3 2.2E+02 0.0075 26.1 8.1 13 294-306 174-186 (242)
203 2iub_A CORA, divalent cation t 28.2 3.5E+02 0.012 24.8 10.3 39 126-164 193-232 (363)
204 3edv_A Spectrin beta chain, br 28.2 3E+02 0.01 23.9 11.3 14 61-74 44-57 (323)
205 3q0x_A Centriole protein; cent 28.2 1.4E+02 0.0047 27.2 6.9 30 147-176 165-194 (228)
206 3h6p_C ESAT-6-like protein ESX 27.8 59 0.002 24.1 3.8 33 169-201 55-87 (96)
207 2l3l_A Tubulin-specific chaper 27.6 2.4E+02 0.0081 22.6 9.7 73 135-209 31-105 (111)
208 1gl2_C VTI1B, vesicle transpor 27.6 1.7E+02 0.006 21.1 6.3 49 154-202 3-51 (65)
209 2lf0_A Uncharacterized protein 27.5 63 0.0021 27.1 4.1 56 150-214 7-62 (123)
210 1urq_A M-tomosyn isoform; tran 27.4 1.8E+02 0.0062 21.2 6.8 31 130-160 6-36 (63)
211 3he5_B Synzip2; heterodimeric 27.3 1.1E+02 0.0037 21.7 4.7 34 176-209 12-45 (52)
212 1gk4_A Vimentin; intermediate 27.0 2E+02 0.0069 21.6 8.9 40 166-205 32-71 (84)
213 3m91_A Proteasome-associated A 27.0 1.2E+02 0.004 21.7 5.0 34 150-183 13-46 (51)
214 4abx_A DNA repair protein RECN 26.8 2E+02 0.0067 24.0 7.3 141 37-193 16-162 (175)
215 3i00_A HIP-I, huntingtin-inter 26.7 91 0.0031 25.6 5.0 44 163-209 11-54 (120)
216 3trt_A Vimentin; cytoskeleton, 26.7 1.8E+02 0.0063 21.0 8.8 37 172-208 40-76 (77)
217 3kpe_A Fusion glycoprotein F0; 26.7 1.4E+02 0.0049 21.4 5.4 41 158-198 2-42 (51)
218 1jsd_B Haemagglutinin (HA2 cha 26.6 58 0.002 28.6 4.0 47 121-167 36-89 (176)
219 3m3w_A Pacsin3, protein kinase 26.1 2.9E+02 0.0099 25.0 8.8 33 122-154 128-160 (320)
220 1xsv_A Hypothetical UPF0122 pr 26.1 2.3E+02 0.0078 21.9 8.1 34 125-158 43-76 (113)
221 3lwe_A M-phase phosphoprotein 26.1 27 0.00094 25.0 1.5 39 106-148 22-60 (62)
222 3zrx_A AF1503 protein, osmolar 26.0 1.7E+02 0.0057 20.3 9.3 21 166-186 65-85 (115)
223 1l8d_A DNA double-strand break 26.0 2.2E+02 0.0075 21.7 9.0 37 168-204 65-101 (112)
224 1lrz_A FEMA, factor essential 25.6 1.1E+02 0.0036 28.9 5.9 35 118-152 237-271 (426)
225 3l4f_A RHO guanine nucleotide 25.5 1.4E+02 0.0046 22.3 5.2 44 169-212 9-52 (61)
226 3abi_A Putative uncharacterize 25.2 14 0.00047 34.0 -0.3 16 7-23 18-33 (365)
227 3iyk_A VP5; icosahedral virus; 25.2 1.9E+02 0.0064 29.5 7.8 54 112-169 81-134 (526)
228 2b9b_A Fusion glycoprotein F0; 24.9 1.7E+02 0.0057 29.6 7.4 49 132-180 427-478 (497)
229 1wle_A Seryl-tRNA synthetase; 24.9 4.6E+02 0.016 26.0 10.6 33 189-221 117-149 (501)
230 2h1e_A Chromo domain protein 1 24.8 53 0.0018 28.3 3.4 27 105-132 48-74 (177)
231 1lwu_A Fibrinogen alpha-1 chai 24.7 92 0.0032 26.0 4.6 28 149-176 25-52 (119)
232 3t37_A Probable dehydrogenase; 24.7 16 0.00054 34.4 0.0 15 9-23 20-34 (526)
233 3i2w_A Syndapin, LD46328P; EFC 24.6 3.5E+02 0.012 23.6 9.7 39 121-159 114-152 (290)
234 3p8q_A GP5, head protein; viru 24.6 16 0.00054 34.4 0.0 64 138-208 5-68 (385)
235 1tqg_A Chemotaxis protein CHEA 24.5 2E+02 0.0067 21.5 6.3 39 168-208 37-75 (105)
236 2kvm_A Chromobox protein homol 24.5 32 0.0011 25.5 1.7 25 103-128 29-53 (74)
237 1wt6_A Myotonin-protein kinase 24.3 2.6E+02 0.0088 21.9 8.0 27 122-148 11-37 (81)
238 2fxo_A Myosin heavy chain, car 24.3 2.8E+02 0.0095 22.3 9.3 66 128-193 58-123 (129)
239 2ieq_A S glycoprotein, spike g 24.1 2.4E+02 0.0082 23.2 7.0 34 124-158 4-37 (109)
240 3cve_A Homer protein homolog 1 23.8 2.4E+02 0.0083 21.4 8.2 55 151-208 5-59 (72)
241 2vkl_A RV0948C/MT0975; helical 23.7 2.2E+02 0.0074 21.7 6.4 52 150-201 16-67 (90)
242 2z5i_A TM, general control pro 23.7 1.3E+02 0.0045 21.2 4.7 30 149-178 15-44 (52)
243 1dip_A Delta-sleep-inducing pe 23.5 1.5E+02 0.0052 23.0 5.3 25 186-210 13-37 (78)
244 3qao_A LMO0526 protein, MERR-l 23.4 70 0.0024 28.6 4.0 22 151-172 81-102 (249)
245 2lw1_A ABC transporter ATP-bin 23.4 2.4E+02 0.0082 21.2 7.7 27 152-178 21-47 (89)
246 4gip_D Fusion glycoprotein F1; 23.3 58 0.002 32.1 3.7 52 132-194 346-397 (409)
247 2xz3_A Maltose ABC transporter 23.1 1.1E+02 0.0039 28.6 5.6 54 168-226 380-433 (463)
248 2efr_A General control protein 23.1 3.5E+02 0.012 23.1 10.8 76 125-200 74-152 (155)
249 3r2p_A Apolipoprotein A-I; amp 23.1 3.4E+02 0.012 22.8 10.4 67 125-191 79-150 (185)
250 3nmd_A CGMP dependent protein 23.0 89 0.003 23.9 3.9 44 151-194 24-67 (72)
251 1yvv_A Amine oxidase, flavin-c 22.9 18 0.00061 31.3 0.0 14 9-22 5-18 (336)
252 3r4h_A Coiled coil helix CC-TE 22.9 56 0.0019 21.5 2.4 25 171-195 6-30 (34)
253 2r2v_A GCN4 leucine zipper; co 22.7 97 0.0033 20.7 3.5 26 154-179 2-27 (34)
254 1r8e_A Multidrug-efflux transp 22.5 1.4E+02 0.0046 25.8 5.6 31 146-176 79-109 (278)
255 3kqg_A Langerin, C-type lectin 22.4 1.1E+02 0.0039 24.5 4.8 18 150-167 3-20 (182)
256 3lay_A Zinc resistance-associa 22.2 3.2E+02 0.011 23.5 7.9 6 213-218 140-145 (175)
257 3s84_A Apolipoprotein A-IV; fo 22.2 4.4E+02 0.015 23.9 11.0 45 145-189 102-147 (273)
258 2fyz_B Fusion protein, fusion 22.0 85 0.0029 22.3 3.4 22 132-153 11-32 (48)
259 1nfn_A Apolipoprotein E3; lipi 21.9 2.9E+02 0.01 23.7 7.6 24 167-190 99-122 (191)
260 1ez3_A Syntaxin-1A; three heli 21.9 1.5E+02 0.005 23.0 5.2 16 130-145 14-29 (127)
261 2olt_A Hypothetical protein; s 21.9 3.6E+02 0.012 22.7 10.0 17 193-209 162-178 (227)
262 3ku3_B Hemagglutinin HA2 chain 21.9 62 0.0021 28.5 3.2 58 119-176 34-98 (174)
263 3uux_B Mitochondrial division 21.8 4.7E+02 0.016 24.1 9.9 67 124-194 152-218 (242)
264 1h2v_C 80 kDa nuclear CAP bind 21.7 78 0.0027 33.1 4.5 43 112-154 602-650 (771)
265 2bni_A General control protein 21.7 95 0.0032 20.8 3.3 28 154-181 2-29 (34)
266 2d9u_A Chromobox protein homol 21.6 25 0.00085 26.1 0.6 25 103-128 26-50 (74)
267 2l7b_A Apolipoprotein E, APO-E 21.4 1.6E+02 0.0056 27.4 6.3 63 125-187 104-171 (307)
268 2zvf_A Alanyl-tRNA synthetase; 21.3 1.3E+02 0.0044 24.5 5.0 76 128-203 7-97 (171)
269 2ieq_A S glycoprotein, spike g 21.3 3.4E+02 0.012 22.2 8.3 19 129-147 2-20 (109)
270 3m9b_A Proteasome-associated A 21.3 99 0.0034 28.6 4.6 32 150-181 58-89 (251)
271 4hpq_C ATG17, KLTH0D15642P; au 21.2 5.6E+02 0.019 24.9 10.2 67 140-210 27-109 (413)
272 4gde_A UDP-galactopyranose mut 21.2 26 0.0009 32.3 0.8 14 9-22 13-26 (513)
273 3efg_A Protein SLYX homolog; x 21.2 1.6E+02 0.0056 22.3 5.1 33 176-208 16-48 (78)
274 3c3f_A Alpha/beta peptide with 21.0 1.1E+02 0.0037 20.5 3.5 28 154-181 2-29 (34)
275 2b2y_C CHD-1, chromodomain-hel 21.0 35 0.0012 28.1 1.4 23 106-128 60-82 (115)
276 2yo3_A General control protein 21.0 3.6E+02 0.012 25.2 8.3 65 117-181 194-258 (268)
277 3m5g_B Hemagglutinin; influenz 20.9 33 0.0011 30.4 1.3 61 119-179 34-101 (182)
278 1tr2_A Vinculin isoform 1; act 20.9 4.5E+02 0.015 28.3 10.2 15 61-75 576-590 (1066)
279 3u5c_K 40S ribosomal protein S 20.8 45 0.0015 27.2 2.0 13 214-226 69-81 (105)
280 3c98_B Syntaxin-1A; protein co 20.6 3.8E+02 0.013 22.4 8.5 21 128-148 47-67 (279)
281 4dpv_Z Protein (parvovirus coa 20.5 28 0.00094 35.7 0.8 12 102-113 521-532 (584)
282 2p22_A Suppressor protein STP2 20.5 4.2E+02 0.015 23.0 10.2 37 189-225 57-93 (174)
283 1gd2_E Transcription factor PA 20.4 2.7E+02 0.0093 20.8 7.5 47 145-191 21-67 (70)
284 4i0x_B ESAT-6-like protein MAB 20.4 2.8E+02 0.0094 20.8 8.0 26 121-146 11-36 (103)
285 2p4w_A Transcriptional regulat 20.1 4E+02 0.014 22.8 8.1 58 137-194 120-178 (202)
No 1
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=94.28 E-value=0.11 Score=41.36 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=49.2
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHH
Q 021597 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (310)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~ 199 (310)
|||+|-+..-.... ++|..|.+|...+...+.-|-|-+..=-+++.+++..-..-|.-++.|-....+
T Consensus 8 YVT~Kqf~e~l~~F------------k~~~~~~~~~~kie~~~~~QgEqI~~qGeqIkeLq~eqkaQg~tl~lil~tL~~ 75 (85)
T 2ba2_A 8 YVTHKQLDEKLKNF------------VTKTEFKEFQTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQG 75 (85)
T ss_dssp BCBHHHHHHHHTTB------------CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89998877642221 345555555555555555555544444455555555556667777788888888
Q ss_pred HHHHHHHhh
Q 021597 200 LESKLIEIE 208 (310)
Q Consensus 200 Le~Ki~~ie 208 (310)
+..+|+.||
T Consensus 76 ~nkRLDkle 84 (85)
T 2ba2_A 76 INKRLDNLE 84 (85)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhhccC
Confidence 888888887
No 2
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=93.36 E-value=1.1 Score=36.50 Aligned_cols=79 Identities=10% Similarity=0.281 Sum_probs=62.4
Q ss_pred HHHHHhH---HHHHHHHHHHHHHHHHhHhhhh----hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 021597 131 NSVARQL---EDVYSSISAAQRQLSSKITSVD----RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (310)
Q Consensus 131 ~sv~KqL---eqVs~sL~~aKrhLsqRI~~vD----~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (310)
+.++||| .|..+.+..+|+.|..+|+.+. .|++++.+....++.++..-..+|..+..+++.+..-=..|..+
T Consensus 11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~ 90 (107)
T 2no2_A 11 AEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAE 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 4677889999999999999865 66777888888888888888888888888888888777777777
Q ss_pred HHHhhh
Q 021597 204 LIEIEG 209 (310)
Q Consensus 204 i~~ie~ 209 (310)
++.++.
T Consensus 91 ~~~l~~ 96 (107)
T 2no2_A 91 FAELEK 96 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 3
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=90.05 E-value=2.4 Score=42.34 Aligned_cols=97 Identities=10% Similarity=0.199 Sum_probs=64.2
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-----hh
Q 021597 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-----LI 186 (310)
Q Consensus 115 ~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aK---rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~-----~i 186 (310)
+.|+|=-..++....+..|-..|++++..-..++ ++|+..+...+.++.++.+..+.-.+++.+.+.-++ ++
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~ 166 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI 166 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3788888899999999999999999987777665 346666666666666655555555555544443332 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh
Q 021597 187 GDEFQSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 187 g~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
...+..++..+..|..||..+|.+-
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666777776666553
No 4
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.60 E-value=4.3 Score=38.43 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (310)
-|.+++..+-..=..+-++|..+.+.+.+-|++.-. ..|+......++.++++++..+.++.-.-..-++.|-+|-.
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRA-VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA 432 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHH-HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHH
Confidence 344555444443335677888888888888887644 44777888999999999999999988888877777766543
No 5
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.87 E-value=2.5 Score=40.30 Aligned_cols=66 Identities=9% Similarity=-0.056 Sum_probs=53.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 021597 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (310)
Q Consensus 158 vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (310)
+....+++.++.++.+.|-..++.+.+.++.+++.+++--..++..+.+++..=.-+++-...+|.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 445666677788888888888889999999999999988888888888888777777777777775
No 6
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=88.84 E-value=4.2 Score=36.24 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde 164 (310)
++.|+..+...+..+.+.++.+-+++...++.+....++
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~ 43 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISEN 43 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444444444444444333333
No 7
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=88.76 E-value=7 Score=34.82 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=28.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
+...+++++..+...-.++....+.+....+++.++++.+.+++......+.++...+..+.
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEAS 66 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444433333333
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.05 E-value=3.9 Score=40.12 Aligned_cols=94 Identities=10% Similarity=0.149 Sum_probs=47.9
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021597 115 LPDMMFATRRSLSDACNSVARQLEDVY-------SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (310)
Q Consensus 115 ~SDlMfVTKRnms~Av~sv~KqLeqVs-------~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig 187 (310)
+-++|==+-|++.+.++.+...|+.++ .-+..++.-|.+|.....+.=+-..|.+..++..+..++++|..--
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455556777777777777776653 3344444545555444444444445555555555555554443322
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 021597 188 DEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
-.|..++..|+.+-.||.+||
T Consensus 134 ~~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 134 QRINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 244444444444444444444
No 9
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.59 E-value=1.3 Score=36.26 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=26.0
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
.+|++|...++.+...-....+.+.++.. +...+++.++..+..||.-|..+
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQ---RGELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHH
Confidence 45555555555555555555554444433 22334455555555555555443
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.37 E-value=5.3 Score=40.78 Aligned_cols=95 Identities=8% Similarity=0.122 Sum_probs=64.0
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-------HHHHHHHHHHHHhhhchhhhhh
Q 021597 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-------EISQATQEEVTILRGRSKLIGD 188 (310)
Q Consensus 116 SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~-------eis~~i~~eV~~v~~dl~~ig~ 188 (310)
-++|-=+-|++.+-++.|-.+|++++.+=..+-....+-.+.|..++.+.. |++.+++..+..++..|.+--.
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQls 131 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQ 131 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777889999999999999999987766666666655555555554444 4444555555555555544445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 021597 189 EFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
-++.||..|+.+-.||.+||--
T Consensus 132 nIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777788888743
No 11
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=86.99 E-value=5 Score=29.75 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhHHHHHH-HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 125 SLSDACNSVARQLEDVYS-SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~-sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
.|+.+.+.|=.|-|.+-. .-+.+..-...+++.+........+-...++.|+++++..+..+.-|+++++
T Consensus 6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566777777777665533 3445666677788877777777777777778887777777666666666554
No 12
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.89 E-value=1.3 Score=36.41 Aligned_cols=67 Identities=6% Similarity=0.263 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 138 EDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 138 eqVs~sL~~aKrh---LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
..-.+.|..+|.+ |..+|++|...++.+...-....+.+.++.. +...+++.++..+..||.-|..+
T Consensus 27 ~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~ 96 (131)
T 3tnu_A 27 ATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQL 96 (131)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555543 4456667777666666555555555555543 23445566666666666665544
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.87 E-value=4.4 Score=36.31 Aligned_cols=28 Identities=4% Similarity=0.092 Sum_probs=13.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 021597 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 184 ~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
..+..+++....-...||.+|-++...-
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444433
No 14
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=84.77 E-value=14 Score=31.76 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH------------HhhhchhhhhhHHHHHHHHHH--------HHHH
Q 021597 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRGRSKLIGDEFQSVRDIVQ--------TLES 202 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~------------~v~~dl~~ig~Dv~~v~~~V~--------~Le~ 202 (310)
-+.+-|++|..|.|+|=.++|+.+.+.+..|++|. .++.|+.....|++.+...+. .+|.
T Consensus 11 y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~ 90 (141)
T 3okq_A 11 YMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEA 90 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence 46677888888888888888888888888888764 345555555555555555543 4677
Q ss_pred HHHHhhhhhhHHhHHHH
Q 021597 203 KLIEIEGKQDITTLGVK 219 (310)
Q Consensus 203 Ki~~ie~kQd~Tn~GV~ 219 (310)
-|..|..-|+|=|.==.
T Consensus 91 EL~~VceEQqfl~~Qed 107 (141)
T 3okq_A 91 ELDKVCEEQQFLTLQEE 107 (141)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777877665433
No 15
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=83.55 E-value=2.4 Score=33.69 Aligned_cols=59 Identities=8% Similarity=0.097 Sum_probs=38.7
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021597 118 MMFATRRSLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (310)
Q Consensus 118 lMfVTKRnms~Av~sv~KqLeqVs~sL~-~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (310)
++----+.+...++++.+.++++..... ..|+. .|..++..|||..|+.+++.-||..+
T Consensus 16 lFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~---~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 16 HFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKK---LVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333345566677777777777643322 34433 36677888888888888888887665
No 16
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=83.52 E-value=3.7 Score=32.24 Aligned_cols=53 Identities=9% Similarity=0.173 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (310)
+.+...++++...|+++...=...|+. -|..++..+||..|+..++.-||..+
T Consensus 8 ~df~~~~~~i~~~l~~~~~~~ge~Rk~---~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 8 SDFKTTLEQAKASLAEAPSQPLSQRNT---TLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345677888888888876333334443 46777889999999999999999888
No 17
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=83.36 E-value=1.3 Score=29.08 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=25.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 021597 183 SKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 183 l~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
++++.+|+.+++.+|+.|..+++++|..-
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678899999999999999999999764
No 18
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=83.34 E-value=2.2 Score=39.94 Aligned_cols=58 Identities=9% Similarity=0.213 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
..|++++++.++....+|+.+|+.+++....=..++.+.|.++-..+-.|..+++.|+
T Consensus 200 v~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~ 257 (268)
T 2yo3_A 200 YAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIK 257 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778999999888888888877777666666666666555555555555555444
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.31 E-value=9.1 Score=36.96 Aligned_cols=37 Identities=3% Similarity=0.083 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 021597 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD 159 (310)
...+.+.+..+...+++....++..++++..|++...
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 3446678888888888889999999999988887766
No 20
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=83.07 E-value=3 Score=34.73 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=34.6
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhh-hHHHHHHHHHHHHHHHHHhhhc
Q 021597 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR-DVNKIVEISQATQEEVTILRGR 182 (310)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~-klde~~eis~~i~~eV~~v~~d 182 (310)
+++-|.++|.++..+|+.+.+++..+.++=. |- +++. .+..=+.....++++|..++..
T Consensus 68 ~~~EL~~~l~sie~dLeDLe~sI~ivE~np~-kF-~l~~~Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 68 TTNELRNGLRSIEWDLEDLEETIGIVEANPG-KF-KLPAGDLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HH-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-hc-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777765532 22 2222 2444444555555555555443
No 21
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=81.23 E-value=1.8 Score=34.35 Aligned_cols=62 Identities=10% Similarity=0.124 Sum_probs=44.6
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021597 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (310)
Q Consensus 116 SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~ 180 (310)
|+++----+.+...++.+.+.+.++...=...|+. -|..++..|||..|+..++.-||..+-
T Consensus 4 SelFe~YE~df~~l~~~i~~kl~~i~~~~geerk~---~i~~ie~~l~EA~ell~qMelE~r~~p 65 (102)
T 1vcs_A 4 GSSGEGYEQDFAVLTAEITSKIARVPRLPPDEKKQ---MVANVEKQLEEARELLEQMDLEVREIP 65 (102)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHGGGSCTTTHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444445667788889999888876432334443 377888999999999999999987653
No 22
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=80.89 E-value=22 Score=29.16 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=13.5
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 174 ~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
.++..+...+..+..++..+..-+..++..+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (284)
T 1c1g_A 69 EKLELAEKKATDAEADVASLNRRIQLFEEELDRA 102 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444433333
No 23
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=80.67 E-value=15 Score=27.22 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHH------------HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 021597 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKI------------VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~------------~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (310)
+|+++...+..+...+.+.+.+|...++.. .+.-...+..+..+..-|..|...+...-..++.-|.+
T Consensus 12 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~ 91 (98)
T 3gwk_C 12 ELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDAD 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433 34444555666666666666666666666666666655
Q ss_pred HH
Q 021597 204 LI 205 (310)
Q Consensus 204 i~ 205 (310)
+.
T Consensus 92 ~A 93 (98)
T 3gwk_C 92 IA 93 (98)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 24
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.47 E-value=12 Score=29.32 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=51.2
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 021597 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (310)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC 222 (310)
-++.|..|+++..+.+...+-||.+++++-.....+.+.++.-...|+.....+..-|..=...|..|.
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777788888888888888888887777777777777777777777777766666666666553
No 25
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.35 E-value=22 Score=30.78 Aligned_cols=70 Identities=9% Similarity=0.073 Sum_probs=46.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 129 Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
+|+.. +.+.+.-..|.....+|..||..++..+.+-....+.++||. ..++--..-+|.|+..++
T Consensus 59 ~vs~~-~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl--------------~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 59 IVSHD-DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAAL--------------ISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
T ss_pred cccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH
Confidence 44443 344455666777777777888877777777766666666665 666666777778887777
Q ss_pred h-hhhH
Q 021597 209 G-KQDI 213 (310)
Q Consensus 209 ~-kQd~ 213 (310)
. ++..
T Consensus 124 ~EN~~L 129 (152)
T 3a7p_A 124 KEHSQL 129 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 5 5444
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.35 E-value=17 Score=30.41 Aligned_cols=64 Identities=8% Similarity=0.147 Sum_probs=50.3
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (310)
++.++++.+...+++...=....+.|+...+..++....++..++.-+..|+.++.++|.+.+.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677777777777777777888888888888888888888888888888888888877654
No 27
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.06 E-value=18 Score=34.17 Aligned_cols=42 Identities=7% Similarity=0.269 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHH------HHHHHHHHHhHhhhhhhHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSI------SAAQRQLSSKITSVDRDVNKI 165 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL------~~aKrhLsqRI~~vD~klde~ 165 (310)
....+|++.+.+++++.-+.+ ..+.++|.+.|+++.+++-+.
T Consensus 369 ~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 416 (471)
T 3mq9_A 369 QTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDV 416 (471)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHH
Confidence 456667776666666554443 344567888888888877654
No 28
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=79.78 E-value=14 Score=36.30 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH----HHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHh
Q 021597 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV----TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (310)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV----~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn 215 (310)
+...|..+-|.+..||+.|...|++.....+.+-.-+ ..++.++.++.+-=..+.+.-+.||.+|.-|..+-+-..
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777889999999999999998876666655443 344555666665556677777888888888777755444
Q ss_pred HHHHHH
Q 021597 216 LGVKKL 221 (310)
Q Consensus 216 ~GV~~L 221 (310)
.-|..|
T Consensus 134 ~~ir~L 139 (390)
T 1deq_A 134 QRINLL 139 (390)
T ss_pred HHHHHH
Confidence 433333
No 29
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=79.77 E-value=17 Score=36.65 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=80.6
Q ss_pred ccCcCchhhhhhhhHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021597 112 GWKLPDMMFATRRSLSDACNSVARQLEDV-------YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (310)
Q Consensus 112 Gws~SDlMfVTKRnms~Av~sv~KqLeqV-------s~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (310)
|--+-++|-=+.|+..+.++.+.+.|+.+ +.-+..++.-|.+|.....+.=+-..|.+..++.....+++.+.
T Consensus 49 GCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd 128 (491)
T 1m1j_A 49 GCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVA 128 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55566778888899999999888888877 45577778888888888888888888889999998888888886
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 185 LIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
.--.-|..+|..|+.+-.||.+||.-
T Consensus 129 ~qi~~IrvLq~~l~~q~skIQRLE~d 154 (491)
T 1m1j_A 129 TQVNRIKALQNSIQEQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55578888888888888899988854
No 30
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=79.57 E-value=12 Score=33.48 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=28.3
Q ss_pred HHHHHHHHHhh---hhhhHHhHHHHHHHHHHHhhccCCCccceec
Q 021597 198 QTLESKLIEIE---GKQDITTLGVKKLCDRARELENGRPTELVQA 239 (310)
Q Consensus 198 ~~Le~Ki~~ie---~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~ 239 (310)
..+...+.+|= .=||+|-+=|......++.++..-..=+...
T Consensus 126 ~~~~~~l~eIm~AqdFQDLTGQ~I~KVi~lv~~vE~~L~~ll~~~ 170 (214)
T 1kmi_Z 126 SFTNAQLLKIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLEN 170 (214)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444443 3489999999999998888888777666543
No 31
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=79.47 E-value=39 Score=31.16 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 021597 61 LLAEVSSVQ 69 (310)
Q Consensus 61 L~aQV~~La 69 (310)
|...+++++
T Consensus 11 l~~~~~~ia 19 (341)
T 3zx6_A 11 LSNTVDKIA 19 (341)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 32
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=78.19 E-value=5.7 Score=33.63 Aligned_cols=92 Identities=13% Similarity=0.194 Sum_probs=47.4
Q ss_pred CcCchhhhhhhhHHHH------HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021597 114 KLPDMMFATRRSLSDA------CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (310)
Q Consensus 114 s~SDlMfVTKRnms~A------v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig 187 (310)
+..|.+....+.|..+ .+.+...|+.++..|..+-..|..-.++++--=+.. ..+.+-...++.=-...|
T Consensus 67 ~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL----~~ie~RL~~l~~L~RKyg 142 (175)
T 4abx_A 67 NAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEAL----DRVEARLSALSKLKNKYG 142 (175)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHH----HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH----HHHHHHHHHHHHHHHHcC
Confidence 4556666666666542 344555566666666666666665555554322222 222222333333333445
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 021597 188 DEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 188 ~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
.+++.|-..-..+..++..++.
T Consensus 143 ~~~eell~~~~~~~~eL~~l~~ 164 (175)
T 4abx_A 143 PTLEDVVEFGAQAAEELAGLEE 164 (175)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhC
Confidence 5666666666666666666554
No 33
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=77.84 E-value=6.5 Score=28.38 Aligned_cols=41 Identities=5% Similarity=0.074 Sum_probs=18.9
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
.++.|..++..++.++..|.+||.+=-.-|..+..+++...
T Consensus 10 ~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~ 50 (65)
T 1gl2_D 10 GLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTD 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555433333333333333333
No 34
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=77.66 E-value=44 Score=30.79 Aligned_cols=13 Identities=0% Similarity=0.233 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhcC
Q 021597 63 AEVSSVQQELSHV 75 (310)
Q Consensus 63 aQV~~LaqElr~L 75 (310)
.-+++|...++.+
T Consensus 6 ~pl~~l~~~~~~i 18 (341)
T 3zx6_A 6 RPIIELSNTVDKI 18 (341)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3456666666666
No 35
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=77.01 E-value=25 Score=27.57 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 021597 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (310)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (310)
|..=+....-|.+.+..++.+..+-.....++|..++..+..+..|++....-....-.|+..-+..-.-+-..|..|.+
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555667777777777777777777788888888888888888888777777777777777666666777777776
Q ss_pred HHHhhc
Q 021597 224 RARELE 229 (310)
Q Consensus 224 f~~~~~ 229 (310)
-++-++
T Consensus 94 riqllE 99 (101)
T 3u59_A 94 RIQLVE 99 (101)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 665443
No 36
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=76.81 E-value=26 Score=34.99 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021597 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (310)
Q Consensus 141 s~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (310)
.+.|...++++...|+.|.+++++....+..+++-|..++..
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~s 129 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNK 129 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 444455555555556666666655554444433333333333
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.56 E-value=16 Score=37.38 Aligned_cols=73 Identities=12% Similarity=0.207 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH----HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 021597 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQAT----QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i----~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (310)
+...|-.+-+-|+.||+.|-.++++...-.+.+ +..+..++.++.+.++--..+.++-+.||.+|..|+.+-|
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVd 127 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVI 127 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999999986655544 4556677777777773333344444477777777766543
No 38
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=76.48 E-value=21 Score=34.98 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 167 EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 167 eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
+-++.+.+|+..+...+.+....+..++.++..++.||..+
T Consensus 84 q~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 84 QKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHH
Confidence 33444445555554444444445555555555555555444
No 39
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.12 E-value=26 Score=27.42 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=44.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH
Q 021597 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (310)
Q Consensus 134 ~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (310)
-|++++-...+..--..|..||..+...+|...+-....+.++.+.....+.--.++.++++-++-||
T Consensus 32 ~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 32 KKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444555777777777777777776666666666666666666677777776666655
No 40
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=76.02 E-value=5 Score=32.32 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=27.5
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021597 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (310)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (310)
..|++.|..||+.++..+++..+....++++++.+...+.
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777666555543
No 41
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=75.66 E-value=19 Score=27.18 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=32.2
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
....|.+.+..++.+...-.....++|..++..+..+..|++....-+.....||..-+
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555556666666666666666655555555555554433
No 42
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=75.28 E-value=18 Score=26.12 Aligned_cols=53 Identities=8% Similarity=0.113 Sum_probs=27.2
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHH
Q 021597 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (310)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV 218 (310)
-+.++.|..++..++.++..|.+|+ +.=..++..|+.++++...+=..++.-+
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El--------------~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl 61 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEI--------------DTQNRQIDRIMEKADSNKTRIDEANQRA 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555 4445555555555555555544444443
No 43
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=74.88 E-value=9.2 Score=35.05 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=50.3
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
..||..+..++|+..+=+-...+.+....-.+.++..||..++.-|..||+|+...|.+
T Consensus 83 e~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~ 141 (242)
T 3c9i_A 83 EARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENN 141 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccc
Confidence 57999999999999887777777888888888899999999998888888888877755
No 44
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=74.37 E-value=23 Score=25.85 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=18.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 021597 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (310)
Q Consensus 129 Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD 159 (310)
.+..+++++.+..+.|...-..|.++|+.|.
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~ 43 (93)
T 4ioe_A 13 ELERIAGNFKNAAGEAQSQINRLEGDINSLE 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666663
No 45
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=74.18 E-value=17 Score=26.15 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=41.3
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
|.+++.++..|++...-|...-..+|......++.....-..-+..+..||.|+.+++
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 5667777777777766666666667777777777666665556778888888887765
No 46
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=73.96 E-value=31 Score=27.22 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=55.4
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 021597 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (310)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (310)
=+....-|.+.+..++.+..+-..+..+||..++..+..+..|++..+.-+...-.|+..-+..-.-+-..|..|-+-++
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777777777777777788888888888888888888777777666776666555555555665544443
Q ss_pred h
Q 021597 227 E 227 (310)
Q Consensus 227 ~ 227 (310)
-
T Consensus 97 l 97 (101)
T 3u1c_A 97 L 97 (101)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=73.70 E-value=13 Score=28.16 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=28.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 021597 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (310)
Q Consensus 184 ~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~ 223 (310)
..||.|++.=..++..|+.++++...+=..++.-+..+..
T Consensus 36 ~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 36 QRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667777777778887777777777777766644
No 48
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=73.49 E-value=11 Score=26.45 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 021597 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (310)
Q Consensus 158 vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (310)
++.+++++.+.-..++.+..+.+..+.+.-.++..++.-+..|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334433333333333333333333333334333333333
No 49
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=73.21 E-value=15 Score=28.13 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=25.0
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 021597 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (310)
Q Consensus 176 V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (310)
|..++.=--.||.+++.=..++..|+.|+++...+=..+|.-+..|
T Consensus 38 v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 38 IGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333333344555556666666666666666666655555554443
No 50
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=72.64 E-value=31 Score=26.68 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=17.5
Q ss_pred HHHHHHhHHHHHHHHH---HHHHHHHHhHhhhhhhHHH
Q 021597 130 CNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNK 164 (310)
Q Consensus 130 v~sv~KqLeqVs~sL~---~aKrhLsqRI~~vD~klde 164 (310)
...+.++++++.+.|. .-+..+.++|+.+...+..
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544443 3345555566655555544
No 51
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=71.82 E-value=3.1 Score=29.19 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=19.8
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 021597 147 AQRQLSSKITSVDRDVNKIVEISQATQE 174 (310)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~ 174 (310)
+|.+|-|.|++||..++...+=+...++
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999888776444333333
No 52
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=71.44 E-value=24 Score=27.04 Aligned_cols=59 Identities=7% Similarity=0.144 Sum_probs=36.7
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
+.-+.++.|...+..++.++..|-+||..=-.-|..|..+++.....+..--.|+..+-
T Consensus 26 eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll 84 (87)
T 1sfc_D 26 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555566666666666666666666666666667777766666656665553
No 53
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=71.07 E-value=31 Score=26.00 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=50.7
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHh
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn 215 (310)
+..+|+.+-...|...+=......++.+..........++.+++.-+..||.-++..+..=.-++
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777788888888888999999999999999998888776644333
No 54
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=70.45 E-value=28 Score=25.30 Aligned_cols=59 Identities=14% Similarity=0.190 Sum_probs=35.6
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-----HHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021597 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-----EISQATQEEVTILRGRSKLIGDEFQSV 193 (310)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~-----eis~~i~~eV~~v~~dl~~ig~Dv~~v 193 (310)
.+|+++...+..+...|.+.+++|...++... +-.....++..+.+..+.++...++.+
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i 75 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGI 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888887777753 233444444444444444443333333
No 55
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=70.29 E-value=9.6 Score=28.87 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=43.3
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
..++.|..++..++.++..|.+||.+=-.-|..+..+++.....+..--.|+..+-.
T Consensus 19 ~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 19 EQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777888888888888877777888888888888777777777766644
No 56
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=70.16 E-value=29 Score=25.31 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 021597 136 QLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde 164 (310)
+|+++...+..+..+|.+.+++|+..++.
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~v~~ 41 (99)
T 3zbh_A 13 ELRGVARQYNVESSNVTELIARLDQMSHT 41 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555544444
No 57
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=69.41 E-value=7.4 Score=32.22 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=27.1
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021597 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (310)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (310)
..|++.|..||+.+...++...+..+.++++++.+...+.
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777766655555443
No 58
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=68.23 E-value=12 Score=27.03 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 021597 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (310)
Q Consensus 171 ~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (310)
.+..-|..++.=-..||.|++.=..+...|+.++++...+-..++.-+..
T Consensus 13 ~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 13 ALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555556777778877777888888887777776666655443
No 59
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=67.71 E-value=50 Score=27.07 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsq---RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~ 195 (310)
...++++=+..++.-|-+|++--|.|.| |++....+++|..+=-+++.+++.++-.+.-.|..++..++.
T Consensus 32 ~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 32 IDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567777777788778877766555555 444434444444333444445555555555555555554443
No 60
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=67.43 E-value=39 Score=33.25 Aligned_cols=91 Identities=12% Similarity=0.141 Sum_probs=38.9
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh-------hhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 021597 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKIT-------SVDRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (310)
Q Consensus 116 SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~-------~vD~klde~~eis~~i~~eV~~v~~dl~~ig~ 188 (310)
.|+|.==.++..+-+..|-..|++|+.+=+.|+..+..=-+ ...+..|-..+-++.+.+|+......+.+...
T Consensus 26 ~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~ 105 (411)
T 3ghg_C 26 ADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDS 105 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444444555555555555555555444444332221111 11122233334444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021597 189 EFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ 206 (310)
.|..++.++...+.||..
T Consensus 106 ~i~~l~~~~~~~~~~i~~ 123 (411)
T 3ghg_C 106 SIRYLQEIYNSNNQKIVN 123 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 61
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=67.03 E-value=11 Score=26.65 Aligned_cols=36 Identities=8% Similarity=0.345 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhh
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD 161 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~k 161 (310)
|.+.+..+-..+-.+-....+++..|.|||..+..+
T Consensus 10 Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 10 LGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555555678999999999998765
No 62
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=65.51 E-value=26 Score=24.52 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021597 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (310)
+++.-......-.+++..+++....++++..+-.+.+++++.+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444545556666666666666666666666666666555444
No 63
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=65.10 E-value=36 Score=25.21 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=39.2
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhHHhHHHHHHHHHHHhhcc
Q 021597 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRARELEN 230 (310)
Q Consensus 173 ~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f~~~~~~ 230 (310)
.+++..+..++..++.=+..+..+|..=+.-|++||++ ++.+..|...|-.+.+--+.
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~ 70 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666777777788778888888877 66677788888776654333
No 64
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=64.58 E-value=38 Score=24.57 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 021597 136 QLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde 164 (310)
+|+++...+..+..+|.+.++.|...++.
T Consensus 10 ~l~~~A~~~~~~~~~l~~~l~~L~~~~~~ 38 (97)
T 2vs0_A 10 EIRAKSQSYGQGSDQIRQILSDLTRAQGE 38 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555544444
No 65
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=64.58 E-value=19 Score=27.79 Aligned_cols=39 Identities=10% Similarity=0.326 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde 164 (310)
|.+.+..+-..+-.+-....+++.+|.|||..|..++-.
T Consensus 12 LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 12 MESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455555555555555577999999999999887765
No 66
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=64.36 E-value=39 Score=24.61 Aligned_cols=76 Identities=12% Similarity=0.158 Sum_probs=43.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhh-----HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 021597 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRD-----VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (310)
Q Consensus 129 Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~k-----lde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (310)
.+..+++++.+..+.|...-..|.+.|+.|... -+...+.-...+..+..+..-|..|...+.......+.-|.+
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~~ 92 (99)
T 3zbh_A 13 ELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQ 92 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777777432 223333333444445555555555555555555555544444
Q ss_pred H
Q 021597 204 L 204 (310)
Q Consensus 204 i 204 (310)
+
T Consensus 93 ~ 93 (99)
T 3zbh_A 93 I 93 (99)
T ss_dssp H
T ss_pred H
Confidence 4
No 67
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=63.50 E-value=12 Score=28.74 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=36.9
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
..|.+||+.|..|+--|....+...+.|++-+.. |+.++.-+..|-.|+..++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~-------Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLT-------GARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh
Confidence 4577899999999988888888888888666655 55666666666677776664
No 68
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=63.14 E-value=82 Score=27.97 Aligned_cols=40 Identities=8% Similarity=0.087 Sum_probs=21.4
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 021597 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (310)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (310)
..||+.+.+++.+..+-.+..+.++.++...++.+..++.
T Consensus 103 ~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 103 KERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555543
No 69
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=62.08 E-value=53 Score=35.61 Aligned_cols=15 Identities=13% Similarity=0.477 Sum_probs=6.3
Q ss_pred HhHhhhhhhHHHHHH
Q 021597 153 SKITSVDRDVNKIVE 167 (310)
Q Consensus 153 qRI~~vD~klde~~e 167 (310)
.++..++.++++..+
T Consensus 984 ~~v~~L~~e~~~l~~ 998 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRK 998 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 70
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=61.56 E-value=36 Score=24.86 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=39.1
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhHHhHHHHHHHHHHHh
Q 021597 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRARE 227 (310)
Q Consensus 174 ~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f~~~ 227 (310)
+++..+..++..++.=+..+..+|..=+.-|++||.+ ++.+..|...|-.+..-
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 63 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666667788888888888899999887 66666777777665543
No 71
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=61.21 E-value=1e+02 Score=30.23 Aligned_cols=92 Identities=11% Similarity=0.177 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc------------------hhhhhhHHHHHHHHHHHH
Q 021597 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR------------------SKLIGDEFQSVRDIVQTL 200 (310)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d------------------l~~ig~Dv~~v~~~V~~L 200 (310)
.+.+.|...++.....|+.|...|++....+..+.+-|..++.. .+.+-+++..+..++...
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~ 103 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTH 103 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677777788888888888888888877777777777666653 233556666666677777
Q ss_pred HHHHHHhhhhhhHHhHHHHHHHHHHHhhcc
Q 021597 201 ESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (310)
Q Consensus 201 e~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~ 230 (310)
+..|..++..-+.-+.-|..|-+-+..++.
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 104 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777877777666666667777666666554
No 72
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=60.76 E-value=86 Score=27.42 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqR---I~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (310)
+.+.++...+-+.+-+++..|..=|+-.+++ |.-+..+ ......|+..++...+..-.|...++..+..|
T Consensus 58 ~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~r-------i~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 58 RILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQAR-------ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544332222 2222221 22334556666666666666777777777777
Q ss_pred HHHHHHhh
Q 021597 201 ESKLIEIE 208 (310)
Q Consensus 201 e~Ki~~ie 208 (310)
|..-..+|
T Consensus 131 EKe~a~~e 138 (168)
T 3o0z_A 131 EKEKNNLE 138 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 77666655
No 73
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=60.69 E-value=36 Score=26.41 Aligned_cols=60 Identities=15% Similarity=0.311 Sum_probs=33.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHh
Q 021597 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
..|++++..|+.+... -..|..||..+...|++..+=....+.|+ +.+.+.|++||.++
T Consensus 6 ~e~e~~~~klq~~E~r----N~~Le~~v~~le~~Le~s~~~q~~~~~El-----------------k~l~e~Ld~KI~eL 64 (79)
T 3cvf_A 6 AEREETQQKVQDLETR----NAELEHQLRAMERSLEEARAERERARAEV-----------------GRAAQLLDVSLFEL 64 (79)
T ss_dssp ----CTTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhhHHHHH
Confidence 3355555555443322 33477777777777777766666666555 34445566666665
Q ss_pred h
Q 021597 208 E 208 (310)
Q Consensus 208 e 208 (310)
.
T Consensus 65 ~ 65 (79)
T 3cvf_A 65 S 65 (79)
T ss_dssp H
T ss_pred H
Confidence 4
No 74
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=60.46 E-value=91 Score=27.62 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=64.7
Q ss_pred hhhhHHHHHHH---HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH----HHHhhhchhhhhhHHHHHH
Q 021597 122 TRRSLSDACNS---VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE----VTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 122 TKRnms~Av~s---v~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~e----V~~v~~dl~~ig~Dv~~v~ 194 (310)
++..+.++.++ +-.-||.==+.+...-++|..++.++...+++.+.=-+..+.+ ++.++..+.......+.++
T Consensus 29 le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 29 ARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 2233333344555666778888888888888876666666666 7777777777777778888
Q ss_pred HHHHHHHHHHHHhhhhhhHHhHHHHH
Q 021597 195 DIVQTLESKLIEIEGKQDITTLGVKK 220 (310)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (310)
.-++.||-+=|.+|.+--++..-+..
T Consensus 109 ~~ireLEq~NDdlEr~~R~~~~SleD 134 (189)
T 2v71_A 109 KYVRELEQANDDLERAKRATIMSLED 134 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 77877877777777665555544433
No 75
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=60.44 E-value=40 Score=26.13 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHH
Q 021597 171 ATQEEVTILRGRSKLIGDEFQSVRDI 196 (310)
Q Consensus 171 ~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (310)
..+.||..+|+.++....+++.+++-
T Consensus 31 ~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34556666666666666666555543
No 76
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=60.00 E-value=20 Score=25.52 Aligned_cols=41 Identities=12% Similarity=0.305 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~ 165 (310)
|..+-.+.|-.=|+|+++-....-..+..|||.+..++|+.
T Consensus 3 ~~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 3 TVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444555555677777777777777888888888777764
No 77
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=59.79 E-value=49 Score=24.34 Aligned_cols=18 Identities=0% Similarity=0.281 Sum_probs=7.0
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 021597 159 DRDVNKIVEISQATQEEV 176 (310)
Q Consensus 159 D~klde~~eis~~i~~eV 176 (310)
+.++++..++...|.+++
T Consensus 61 ~~~~~~~~~~L~~i~~~L 78 (98)
T 3gwk_C 61 SPKITEFAQLLEDINQQL 78 (98)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 78
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=59.23 E-value=45 Score=23.92 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=33.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 021597 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (310)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~ 184 (310)
.-.+|++++..|...| +++..| ...+++|.++...+.++|..+...+.
T Consensus 8 qD~~Ld~L~~~v~~lk-~la~~i---g~El~~Qn~~Ld~l~~~~d~~~~~l~ 55 (66)
T 1n7s_D 8 MDENLEQVSGIIGNLR-HMALDM---GNEIDTQNRQIDRIMEKADSNKTRID 55 (66)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3457888888877654 555544 57888898888888887765555543
No 79
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=58.92 E-value=46 Score=33.56 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=33.1
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 021597 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (310)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~ 192 (310)
-=.+|-.||.-++.++|.+..-....|..|...+.++.++..||..
T Consensus 112 ~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 112 VSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677888888999888777777777776666666666666553
No 80
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=58.88 E-value=57 Score=24.76 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHH
Q 021597 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI 168 (310)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ei 168 (310)
-+|++....|..+.++|...|+.|+..++.....
T Consensus 14 ~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 14 DHIEQVTSRARGFKEFVTENLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566677777777777777777777777776555
No 81
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=58.81 E-value=37 Score=33.85 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 021597 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i~~ 174 (310)
+|-..+|.+..+++.+..+ .++++++|..
T Consensus 74 ~ld~~~r~~~~~~~~l~~~---rn~~sk~i~~ 102 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEE---KEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3455677777777766654 4455666654
No 82
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=58.07 E-value=66 Score=25.26 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=23.9
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 021597 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (310)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (310)
..|+.||+.+...+|...+--...++.+.+.....+.--.++.++++-++-|
T Consensus 47 ~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 47 VQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444444444444444333344444445554444433
No 83
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=58.01 E-value=35 Score=24.98 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 021597 137 LEDVYSSISAAQRQLSSKITSVDRDVNK 164 (310)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde 164 (310)
|++....|....++|.+.|+.|+..++.
T Consensus 10 l~~~a~~~~~~~~~i~~~l~~l~~~v~~ 37 (94)
T 3fav_B 10 IEAAASAIQGNVTSIHSLLDEGKQSLTK 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555544444444443
No 84
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=57.66 E-value=66 Score=25.11 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=28.1
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 021597 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (310)
.|+.+..|-....+=.+.++.....+.....+...+....+.-+++|=+||+.
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~ 80 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33333333333333333333344445556666777777777777777666653
No 85
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=57.37 E-value=2.2 Score=32.99 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.3
Q ss_pred eeeEcCcccceeec
Q 021597 9 TFLVGAGILTSVLA 22 (310)
Q Consensus 9 ~ILvGAG~~GSvl~ 22 (310)
+++||||++|..++
T Consensus 5 V~IIGaGpaGL~aA 18 (336)
T 3kkj_A 5 IAIIGTGIAGLSAA 18 (336)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECcCHHHHHHH
Confidence 68899999987654
No 86
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=57.27 E-value=48 Score=23.41 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhH
Q 021597 166 VEISQATQEEVTILRGRSKLIGDE 189 (310)
Q Consensus 166 ~eis~~i~~eV~~v~~dl~~ig~D 189 (310)
..++.++++-++.++.-++.+..+
T Consensus 65 ~~~shel~tpl~~i~~~~e~l~~~ 88 (114)
T 3zcc_A 65 AGVSHDLRTPLTRIRLATEMMSEQ 88 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred HHhhHHHcChHHHHHHHHHHHHHh
Confidence 345555555555555555544443
No 87
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=57.24 E-value=62 Score=27.30 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=53.4
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 021597 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (310)
Q Consensus 153 qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~ 220 (310)
.||+.+..+|.+.+.+.+.......++.+.+..+..|++.--.-+...|.|+..++..=.....-+.-
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKs 119 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777778888888888889999999999999999999999999999888765544443433
No 88
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=57.06 E-value=55 Score=25.00 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=26.6
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
..|..||..+...|++.+.=....+.|+.-+.+.+.-=-+|+..++
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elr 62 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELR 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3466677777777777666666666666555544444334444444
No 89
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=56.80 E-value=57 Score=29.88 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhHHH
Q 021597 166 VEISQATQEEVTILRGRSKLIGDEFQ 191 (310)
Q Consensus 166 ~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (310)
.+++.+++.+|.+.|.++.-.++|++
T Consensus 208 ~~~~~~~~qq~e~f~~~~~p~~e~~~ 233 (273)
T 3s84_A 208 AELGGHLDQQVEEFRRRVEPYGENFN 233 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 45568888888888888887777764
No 90
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=56.56 E-value=79 Score=26.82 Aligned_cols=68 Identities=7% Similarity=0.107 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH-------HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 021597 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ-------EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~-------~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (310)
.++..+..|-..|..-..+|.+.+++...+++.++ +.+.+++..++....-.+.|..+-..|+..|..
T Consensus 72 ~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 72 RLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444444555555555555555555544443 233344444444444445555555555555543
No 91
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=56.49 E-value=49 Score=24.70 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHH------------HHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH
Q 021597 137 LEDVYSSISAAQRQLSSKITSVDRDVNK------------IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (310)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde------------~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (310)
|++....+.....+|.+.|+.|+..++. ..+...+-+....+++.-|..|..-+.........-|
T Consensus 12 l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~~~d 88 (101)
T 3fav_A 12 LAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRAD 88 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555544432 2333344444444444444444444444444433333
No 92
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=56.17 E-value=69 Score=24.91 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=40.8
Q ss_pred hhHHHHHHHHH---HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 021597 124 RSLSDACNSVA---RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (310)
Q Consensus 124 Rnms~Av~sv~---KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (310)
++|.+-+.++= ++|-..-.+|.-+|+.|..|+|.|.+.-+. +..++.++++.-..+
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~---------------------l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDV---------------------LQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------------------HHHHHHHHHHHHHHH
Confidence 34555555553 344455668888999999988877664432 344567888888888
Q ss_pred HHHHHHhhh
Q 021597 201 ESKLIEIEG 209 (310)
Q Consensus 201 e~Ki~~ie~ 209 (310)
+.|+.++|.
T Consensus 64 ~~ri~elEe 72 (77)
T 2w83_C 64 EEKNRELEE 72 (77)
T ss_dssp HHHC-----
T ss_pred HHHHHHHHH
Confidence 888887774
No 93
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=55.16 E-value=66 Score=26.29 Aligned_cols=25 Identities=8% Similarity=0.239 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 185 LIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
.+...++.++.+...|+.+|+..+.
T Consensus 92 ~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 92 ELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555554443
No 94
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=54.55 E-value=81 Score=25.21 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=54.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhh-hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 021597 130 CNSVARQLEDVYSSISAAQRQLSSKITSVD-RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD-~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (310)
+...+++|++.-+.|...=..|..+.++|+ +.=++.....+..++-+..++.-.+.....|.-++..++-||.
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHH
Confidence 456789999999999999999999999998 4445555666666666666666666666667777766665554
No 95
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=54.24 E-value=91 Score=25.70 Aligned_cols=95 Identities=14% Similarity=0.280 Sum_probs=58.0
Q ss_pred EEecccCcCchhhhhhhhHHHHHHHHHHhHHHHH-----------HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021597 108 VWWKGWKLPDMMFATRRSLSDACNSVARQLEDVY-----------SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (310)
Q Consensus 108 mwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs-----------~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (310)
.+.-+-+.-|=+|+-|.-..++++.+-.-..+-. +.+..++++|..-|+.+.+.|++..+....+..+
T Consensus 18 ~~~~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~n- 96 (130)
T 4dnd_A 18 LYFQSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEAN- 96 (130)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred eeeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 3444566779999988888888777766555421 2467888888888888888888887766655433
Q ss_pred HHhhhchhhhh---hHHHHHHHHHHHHHHHHHHhhh
Q 021597 177 TILRGRSKLIG---DEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 177 ~~v~~dl~~ig---~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
=+.|+ .|+..=++.|..++.+|..|+.
T Consensus 97 ------p~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 97 ------PGKFKLPAGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp ------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22322 2355555666777777766654
No 96
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=54.11 E-value=96 Score=26.79 Aligned_cols=21 Identities=5% Similarity=-0.067 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 021597 190 FQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~k 210 (310)
++.+++-...|--.+..+|.+
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 97
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=53.83 E-value=68 Score=24.11 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=38.6
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhHHhHHHHHHHHHHH
Q 021597 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRAR 226 (310)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f~~ 226 (310)
=.+++..+..++..++.=+..+..+|..=+.-|++||++ ++.+..|...|..+..
T Consensus 19 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (83)
T 1sfc_B 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666777777788888889999877 5566677777766553
No 98
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=53.83 E-value=64 Score=25.02 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 021597 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~ 174 (310)
...|..=|.++-.+|++-...=...|.+|.+=++.+|-|+++..|+-+.+..
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3457778888888888888888888899999999999999999887766654
No 99
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=53.46 E-value=57 Score=26.59 Aligned_cols=59 Identities=3% Similarity=-0.013 Sum_probs=45.4
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 021597 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
=|--|.=.||-|-++|+++.|.-.+++.|-.+-..+++........++.-+..|...|.
T Consensus 24 EKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778999999999999999999999888877777776666666666555555544
No 100
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=53.19 E-value=57 Score=23.79 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=20.5
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 173 ~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
.++|......++.....-..=++.+..||.|+.+.+
T Consensus 26 ~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 26 NKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 334444444444443333333777788888877765
No 101
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.85 E-value=42 Score=25.76 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=30.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021597 130 CNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILR 180 (310)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsq---RI~~vD~klde~~eis~~i~~eV~~v~ 180 (310)
.++|++ +.++.++|...-.+|.+ ||+.++..|++-.+..+..+.++...|
T Consensus 15 ~~~mgt-i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 15 IEGRGS-LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp ----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555 77777777776655544 577777777777766666666664443
No 102
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=52.49 E-value=1.8e+02 Score=28.45 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=27.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhcc
Q 021597 182 RSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (310)
Q Consensus 182 dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~~~~ 230 (310)
+.+.+.+++..+..++..-|..|.+++..-+-.+.-|..|-+-+..+++
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444555555555555555666666665544455566666665555554
No 103
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=51.59 E-value=30 Score=37.36 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=12.5
Q ss_pred CCCCcchhhhhhhHHHHHHHhhhc
Q 021597 24 EGRLSSVSDAVGGTLKIVSKLIKQ 47 (310)
Q Consensus 24 nGkLsdv~~~lsg~lk~l~k~lk~ 47 (310)
.|+.+-+...+..-|..|++.|..
T Consensus 652 ~~~~~tv~~~f~~~l~~L~~~l~~ 675 (1184)
T 1i84_S 652 KGMFRTVGQLYKEQLTKLMTTLRN 675 (1184)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHh
Confidence 344556665666666666665543
No 104
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=51.29 E-value=84 Score=24.44 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=6.6
Q ss_pred hhhhHHHHHHHHHHhHHH
Q 021597 122 TRRSLSDACNSVARQLED 139 (310)
Q Consensus 122 TKRnms~Av~sv~KqLeq 139 (310)
||--+.=+-+++=+.+|+
T Consensus 24 TKNaLnvvk~DLI~rvdE 41 (77)
T 2w83_C 24 TKNALNIVKNDLIAKVDE 41 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 105
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=50.38 E-value=32 Score=26.49 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhcC
Q 021597 61 LLAEVSSVQQELSHV 75 (310)
Q Consensus 61 L~aQV~~LaqElr~L 75 (310)
|..|+..|..+++++
T Consensus 25 l~~q~~~l~~~~~e~ 39 (117)
T 2zqm_A 25 VVQQKQKVQLELTEA 39 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666655
No 106
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=50.06 E-value=1.3e+02 Score=26.33 Aligned_cols=13 Identities=0% Similarity=0.115 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhcC
Q 021597 63 AEVSSVQQELSHV 75 (310)
Q Consensus 63 aQV~~LaqElr~L 75 (310)
.-|+..+.+-..|
T Consensus 73 ~~I~~IA~QTNLL 85 (227)
T 1qu7_A 73 SVIDGIAFQTNIL 85 (227)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 107
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=49.96 E-value=1.5e+02 Score=27.06 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=58.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH------HHHHH
Q 021597 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD------IVQTL 200 (310)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~------~V~~L 200 (310)
.+++.+|+-.|-.+...+..+..++.++++..-..|-.. ..+.+.|...|..=..+.++|..++. -+..|
T Consensus 61 dddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~I----R~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~L 136 (234)
T 3plt_A 61 DDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSI----RNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVL 136 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 578888888888888888888888888877766665544 33334566666666666677766663 46778
Q ss_pred HHHHHHhhhhhhHH
Q 021597 201 ESKLIEIEGKQDIT 214 (310)
Q Consensus 201 e~Ki~~ie~kQd~T 214 (310)
|..|.+.|...-.+
T Consensus 137 eqELvraEae~lva 150 (234)
T 3plt_A 137 EQELVRAEAESLVA 150 (234)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHH
Confidence 88877766554444
No 108
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=49.90 E-value=1.1e+02 Score=25.14 Aligned_cols=69 Identities=10% Similarity=0.204 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~ 196 (310)
|.|...++.+..-+|+.-+-+...++.-..-|..|.+.+++..+.-..++. --++|++-.+|++-=.++
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~----~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHK----YVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHH
Confidence 345556666666666666666666666666666666666665443333333 335566666666654443
No 109
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=49.68 E-value=1.1e+02 Score=25.11 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=52.3
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHH----HHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 021597 148 QRQLSSKITSVDRDVNKIVEISQATQE----EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (310)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~----eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (310)
-|.|..+..++.-.+|+.+.=-++-+. .++.++.++......-+.++.-++.||-+=|.+|-..-.|..-+-.+
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 355666666666666655554444443 36778888888888889999999999999998888777776655443
No 110
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=49.16 E-value=58 Score=25.04 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=22.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 021597 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (310)
Q Consensus 184 ~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (310)
..||.+++.=..++..++.|+++...+-..+|.-+..|
T Consensus 47 ~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 47 IDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666666667777777666666666554443
No 111
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=49.06 E-value=41 Score=25.87 Aligned_cols=58 Identities=9% Similarity=0.146 Sum_probs=32.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 021597 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (310)
++.-+-++.|...+..++.++..|.+|+..=-.-|..|..+++.+..-+..--.|+..
T Consensus 26 ~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 26 DDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555556666666666666655555566666666665555444444443
No 112
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=48.94 E-value=10 Score=23.91 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhchhhhhhHHHHH
Q 021597 171 ATQEEVTILRGRSKLIGDEFQSV 193 (310)
Q Consensus 171 ~i~~eV~~v~~dl~~ig~Dv~~v 193 (310)
+.++||.++++.+..+.+++..+
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 56788888888776666666543
No 113
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=48.71 E-value=53 Score=31.67 Aligned_cols=65 Identities=9% Similarity=0.142 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 021597 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (310)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (310)
+-..+|.+..+++.+..+ .++++++|.. . -+.|.+.+..-+..|..+|..+|....-...-+..+
T Consensus 33 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~~---~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTE---RNQVAKRVPK---A-------PPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHSSS---S-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHh---h-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666555443 3445555542 1 112334444444444444444444444444444444
No 114
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=47.94 E-value=60 Score=25.45 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 186 IGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 186 ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
-..||..=+..|..|+.+|..|..+
T Consensus 66 ~~~EI~~Rk~~v~~l~~~i~~lk~~ 90 (95)
T 2c5k_T 66 ENEDVSGREAQVKNIKQQLDALKLR 90 (95)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777788888888888877654
No 115
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=47.77 E-value=79 Score=24.31 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=31.5
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 021597 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (310)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (310)
-|+|...++.-++.+|..+-|.++.+-.+..--+--....++....+.....||.|+
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 456666666666666666666666665554433333344444455555555554443
No 116
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=47.37 E-value=1.1e+02 Score=25.58 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHH
Q 021597 159 DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (310)
Q Consensus 159 D~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ 206 (310)
+..+.+.+.=....+.+..++...++....+++.++.-+..||.++..
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333334444444444455555566666666666666653
No 117
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=47.20 E-value=35 Score=34.05 Aligned_cols=63 Identities=8% Similarity=0.038 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
|-..+|.+..+++.+..+. ++++++|..- ....++.+.+..++..+..-+..||.++..++.+
T Consensus 38 ld~~~r~~~~~~~~l~~~r---n~~sk~i~~~-k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKL---NSVQKEIGKR-FKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777766544 4455555432 1223344445555555555555555555555443
No 118
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=47.01 E-value=40 Score=25.13 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=39.8
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHH--------HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQ--------EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~--------~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
++..++..++=.|++.+++...-. +-...++..+..+...++.++.+...|+.++...+..
T Consensus 7 ~~I~~lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~ 75 (99)
T 1q08_A 7 KFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGT 75 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566677777777777765421 2234455566667777777777777777777777654
No 119
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=46.43 E-value=1.1e+02 Score=24.52 Aligned_cols=72 Identities=8% Similarity=0.099 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 021597 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (310)
Q Consensus 142 ~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (310)
+.+..-|.+|.-.|+++-.-+|+.+.=-+.=...=..+..++..+..|++...-.-..||.|+..+..-=+|
T Consensus 30 d~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 30 DQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666666665555321111111123345566677777787777777899999888765443
No 120
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.85 E-value=1.1e+02 Score=37.25 Aligned_cols=58 Identities=5% Similarity=0.185 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH---HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQL---SSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhL---sqRI~~vD~klde~~eis~~i~~eV~~v~~dl 183 (310)
+.++++..-++|+...+.|++++..| ..+|+.+.++.++...=.+.+++|+...+..+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl 2072 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKV 2072 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554433 24455555555544444444455554444443
No 121
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=45.80 E-value=82 Score=23.00 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 021597 185 LIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (310)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (310)
.+|.++++=+.++..++.|.+.+..+=..++.
T Consensus 28 ~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~ 59 (64)
T 3b5n_D 28 TTGKELDSQQKRLNNIEESTDDLDINLHMNTN 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555444443
No 122
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=45.66 E-value=1.9e+02 Score=27.78 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=29.5
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhh
Q 021597 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITS 157 (310)
Q Consensus 120 fVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~ 157 (310)
|-.|+.+.+....+-|.|......|..+|+..-++-..
T Consensus 128 ~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke 165 (486)
T 3haj_A 128 FKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKE 165 (486)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888888888899999998887655443
No 123
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.54 E-value=87 Score=38.16 Aligned_cols=38 Identities=11% Similarity=0.203 Sum_probs=16.4
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 021597 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (310)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (310)
+++.+..++++.++--+..++++.++.+.+.....+.+
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 124
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=45.07 E-value=1.4e+02 Score=28.00 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=19.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021597 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (310)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~ 181 (310)
.|..|...|+.|-..+.+..+-++.+.+++..-+.
T Consensus 117 d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~ 151 (346)
T 2nrj_A 117 DGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRD 151 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667766665555555555554454444443
No 125
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=44.87 E-value=1.3e+02 Score=24.70 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 021597 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (310)
|.+++..-+..+++.|+.=.+--++=-+..++-.+..+.+|.++...+.+-...+..++..+...
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444444444566667777788888777777777777777665544
No 126
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=44.65 E-value=86 Score=22.62 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=33.4
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh----hHHhHHHHHHH
Q 021597 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ----DITTLGVKKLC 222 (310)
Q Consensus 173 ~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ----d~Tn~GV~~LC 222 (310)
.+++..+..++..++.=+..+..+|..=+..|++||++- +++..|...|-
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~ 64 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666667777777888888889998874 44445555443
No 127
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=44.56 E-value=79 Score=25.83 Aligned_cols=25 Identities=16% Similarity=0.342 Sum_probs=12.6
Q ss_pred chhHH--HHHHhhhheeeEEecccCcCch
Q 021597 92 KKYGV--IVVIVAVGYGYVWWKGWKLPDM 118 (310)
Q Consensus 92 ~~y~l--~a~iGavGYgYmwWKGws~SDl 118 (310)
+.|+- +..+-.+=+ +.--|+++.++
T Consensus 39 R~Y~~~dl~~l~~I~~--lr~~G~sL~eI 65 (142)
T 3gp4_A 39 RKFGAEDLRWILFTRQ--MRRAGLSIEAL 65 (142)
T ss_dssp BCBCHHHHHHHHHHHH--HHHTTCCHHHH
T ss_pred eeeCHHHHHHHHHHHH--HHHcCCCHHHH
Confidence 56766 333323322 24457777665
No 128
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=44.41 E-value=78 Score=24.48 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=27.5
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 021597 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (310)
.+|++++...++......-.+..++ +....||..++=.++.+..+|..+...|-
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql-------~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQL-------SDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4556555443333333333344444 45555555555555555566666665554
No 129
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=43.62 E-value=16 Score=26.76 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.6
Q ss_pred eeEEecccCcCchhhhhhhhHH
Q 021597 106 GYVWWKGWKLPDMMFATRRSLS 127 (310)
Q Consensus 106 gYmwWKGws~SDlMfVTKRnms 127 (310)
-++.|||+.-+|-.|-...||.
T Consensus 18 YlVKWkGy~~~~~TWEp~~nl~ 39 (64)
T 3mts_A 18 YLVKWRGYPDSESTWEPRQNLK 39 (64)
T ss_dssp EEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEecCCCcCCcEeEHHHCC
Confidence 4689999999999999999994
No 130
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=43.57 E-value=42 Score=26.35 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=35.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021597 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~d 182 (310)
-++.-+.+.|..+.-.|+.+.+||...++. =...++.=+...+.++.++..++.+
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~-------~~~EI~~Rk~~v~~l~~~i~~lk~~ 90 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRD-------ENEDVSGREAQVKNIKQQLDALKLR 90 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-------TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999986655 2223333334444444444444433
No 131
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=42.61 E-value=56 Score=31.92 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
|-..+|.+..+++.+..+ .++++++|..- ..-.++.+.+..++..+..-+..||.++..++.
T Consensus 36 l~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHE---RNKIAVEIGKR-RKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566676666666554 44556666531 111233344444444444444444444444443
No 132
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=42.41 E-value=44 Score=23.23 Aligned_cols=30 Identities=10% Similarity=0.382 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHH
Q 021597 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEI 168 (310)
Q Consensus 139 qVs~sL~~aKrhLsqRI~~vD~klde~~ei 168 (310)
.+-+.+.+-...|..||..+..|||...+.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 445567777888999999999999987654
No 133
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=42.28 E-value=1.5e+02 Score=29.63 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=27.2
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 021597 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQR 149 (310)
Q Consensus 115 ~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKr 149 (310)
+.|+|.==.++..+-+..|-..|++++.+=+.|+.
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~ 116 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQ 116 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHH
Confidence 67888888888888888888888888766655553
No 134
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=42.15 E-value=54 Score=23.56 Aligned_cols=10 Identities=10% Similarity=0.292 Sum_probs=4.0
Q ss_pred HHHHhhhchh
Q 021597 175 EVTILRGRSK 184 (310)
Q Consensus 175 eV~~v~~dl~ 184 (310)
+|..++.|+.
T Consensus 26 dV~al~~~v~ 35 (52)
T 1jcd_A 26 DANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 135
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=42.13 E-value=1.1e+02 Score=23.55 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhh
Q 021597 136 QLEDVYSSISAAQRQLSSKITSV 158 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~v 158 (310)
.|.++.+.|..+|.-+..-||.+
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kv 28 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKV 28 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 136
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=41.95 E-value=70 Score=23.01 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=30.0
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 021597 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (310)
Q Consensus 174 ~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~ 216 (310)
+++..+..++..++.=+..+..+|..=+..|++||++-+-|..
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 51 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEV 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666777888888888899999987544443
No 137
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=41.85 E-value=1.6e+02 Score=24.97 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH-----------H------HHHhhhchhh
Q 021597 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE-----------E------VTILRGRSKL 185 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~-----------e------V~~v~~dl~~ 185 (310)
|+.+..-+.-+.++|+...++|..-...+.++|...|+.+|....-...--- + +..+-.|+++
T Consensus 13 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~lla~~qp~a~dlr~i~~~l~i~~dlER 92 (235)
T 1sum_B 13 KKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIEN 92 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 4555556666667777777777666667777787777777765432211111 1 1233466677
Q ss_pred hhhHHHHHHHHHHHHH
Q 021597 186 IGDEFQSVRDIVQTLE 201 (310)
Q Consensus 186 ig~Dv~~v~~~V~~Le 201 (310)
||+-..+|-..+..+.
T Consensus 93 IgD~a~~Ia~~~~~~~ 108 (235)
T 1sum_B 93 IADKCHDIAKNVLELM 108 (235)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7776666655554443
No 138
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=41.17 E-value=54 Score=24.85 Aligned_cols=15 Identities=7% Similarity=0.277 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhcC
Q 021597 61 LLAEVSSVQQELSHV 75 (310)
Q Consensus 61 L~aQV~~LaqElr~L 75 (310)
+..|+..|..+++++
T Consensus 20 l~~q~~~l~~~~~e~ 34 (107)
T 1fxk_A 20 ISVQKQTVEMQINET 34 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666665
No 139
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=40.85 E-value=89 Score=25.06 Aligned_cols=20 Identities=15% Similarity=0.564 Sum_probs=10.0
Q ss_pred HHHHHHHHhHhhhhhhHHHH
Q 021597 146 AAQRQLSSKITSVDRDVNKI 165 (310)
Q Consensus 146 ~aKrhLsqRI~~vD~klde~ 165 (310)
.++++|...|++++.+++..
T Consensus 47 ~t~~eL~~EI~~L~~eI~~L 66 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEIDQL 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544443
No 140
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=40.70 E-value=2e+02 Score=29.19 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhHHHHH------------HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021597 126 LSDACNSVARQLEDVY------------SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs------------~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v 193 (310)
+.++-..+-++|.++. +....-++++.+|++.. +..+.+++++=+..-+..-.++..+.+.+
T Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------i~~~~~~l~~~~~~~~~~~~~~~~~~~~l 667 (695)
T 2j69_A 594 VKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDD------IVSRKSELDNLVKQKQTREINRESEFNRL 667 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444555566665444 33334444444444322 22233333444444555556666677777
Q ss_pred HHHHHHHHHHHHHhhhh
Q 021597 194 RDIVQTLESKLIEIEGK 210 (310)
Q Consensus 194 ~~~V~~Le~Ki~~ie~k 210 (310)
+.+..++-.+|..++..
T Consensus 668 ~~~~~~~~~~~~~~~~~ 684 (695)
T 2j69_A 668 KNLQEDVIAQLQKIEAA 684 (695)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 77666666677766653
No 141
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.52 E-value=1.1e+02 Score=23.96 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHH
Q 021597 170 QATQEEVTILRGRSKLIGDEFQSV 193 (310)
Q Consensus 170 ~~i~~eV~~v~~dl~~ig~Dv~~v 193 (310)
+.|++|++.+|.+.-.+.++++.-
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~ea 50 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREA 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 142
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=39.92 E-value=1e+02 Score=22.26 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=35.2
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhHHhHHHHHHHHH
Q 021597 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDR 224 (310)
Q Consensus 173 ~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f 224 (310)
.+++..+..++..++.=+..+..+|..=+..|++||++ ++.+..|...|-.+
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 64 (69)
T 3b5n_B 9 HQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKA 64 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666777777888888888898877 45555566555443
No 143
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=39.19 E-value=2.1e+02 Score=28.56 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHhcC
Q 021597 65 VSSVQQELSHV 75 (310)
Q Consensus 65 V~~LaqElr~L 75 (310)
+.+=++|.-.+
T Consensus 19 ~~~~~~~~~~~ 29 (461)
T 3ghg_B 19 LDKKREEAPSL 29 (461)
T ss_dssp -----------
T ss_pred cccccCCCCCC
Confidence 34444444444
No 144
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=39.08 E-value=1.2e+02 Score=25.09 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 021597 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ 166 (310)
|+.+..-+.-+.++|+...+++..-...+.++|...|+++|+..
T Consensus 13 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~ 56 (216)
T 2i0m_A 13 EQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQ 56 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHH
Confidence 45556666666777777777776656677777777777777654
No 145
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=38.80 E-value=2.7e+02 Score=27.21 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=3.3
Q ss_pred CCcchh
Q 021597 26 RLSSVS 31 (310)
Q Consensus 26 kLsdv~ 31 (310)
.|.|++
T Consensus 120 ~L~DFI 125 (413)
T 4hpq_C 120 KLGDFI 125 (413)
T ss_dssp TTTTSS
T ss_pred cHHHHc
Confidence 366654
No 146
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=38.73 E-value=72 Score=26.13 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=11.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 185 LIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 185 ~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
.+...++.++.+...|+.+|...+
T Consensus 106 ~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 106 NVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555555444
No 147
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=38.47 E-value=52 Score=31.74 Aligned_cols=63 Identities=11% Similarity=0.254 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
|-..+|.+..+++.+..+ .++++++|..- ..-.++.+.+..++..+..-+..||.++..++.+
T Consensus 35 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSE---RNKLSKEIGKL-KREGKDTTEIQNRVKELKEEIDRLEEELRKVEEE 97 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHTTGG-GSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777776666554 44556666531 1112455566666666676666666666666654
No 148
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=38.19 E-value=1.3e+02 Score=22.86 Aligned_cols=65 Identities=12% Similarity=0.257 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-----HHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 143 SISAAQRQLSSKITSVDRDVNKIVEISQAT-----QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i-----~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
.|..+..-|.++...++.+++++.++++.- +.-...++.+ ......++.+.....+||.-+..||
T Consensus 10 ~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~~knK~~Al~aLkrK-K~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 10 RLRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRK-KRYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345555666777777777777776666642 1123333333 3445556666666666666665554
No 149
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=38.01 E-value=1.6e+02 Score=27.62 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=29.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 021597 183 SKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (310)
Q Consensus 183 l~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (310)
+.....|++.+...|.+|+..|.++..=----.+|+.+|
T Consensus 381 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 419 (463)
T 2xz3_A 381 IHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWL 419 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Confidence 466778888888889999999988776544455677766
No 150
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=37.80 E-value=65 Score=27.18 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 021597 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (310)
Q Consensus 162 lde~~eis~~i~~eV~~v~~dl~~ig~Dv~~ 192 (310)
|.+.+++++++.++|..+..++.+|-.|..+
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5566677777777777777777777777766
No 151
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=37.41 E-value=1.4e+02 Score=22.94 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=16.3
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
+|+++..++||.+.+-..--++|-+=.+.++.+.+--+.++
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~ 46 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 46 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 33444444444444443333344333333333333333333
No 152
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=37.01 E-value=25 Score=21.72 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHH
Q 021597 122 TRRSLSDACNSVARQLEDVYSSIS 145 (310)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~ 145 (310)
|+|-+++++..|+.++.+|-++|.
T Consensus 2 ~q~el~~~~r~v~ekV~~vlaaLq 25 (26)
T 1xwj_B 2 TKKELIESARKVSEKVSHVLAALQ 25 (26)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678899999999999988877663
No 153
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.95 E-value=1.6e+02 Score=28.68 Aligned_cols=88 Identities=9% Similarity=0.065 Sum_probs=53.6
Q ss_pred HhHHHHHHHHHHHHH-H---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhHHHHHHHHHHHHHHHHHHh
Q 021597 135 RQLEDVYSSISAAQR-Q---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIEI 207 (310)
Q Consensus 135 KqLeqVs~sL~~aKr-h---LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~---~ig~Dv~~v~~~V~~Le~Ki~~i 207 (310)
++.|.|-++++.=.- . +-.+|-.+|.+-.+...-.+.++.+-+.+...+. .-+.|.+.+..-+..|..+|..+
T Consensus 9 ~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 88 (455)
T 2dq0_A 9 ENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGEL 88 (455)
T ss_dssp HCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence 345555555543211 1 2355555555555555555555555555544443 33567788888888899999999
Q ss_pred hhhhhHHhHHHHHHH
Q 021597 208 EGKQDITTLGVKKLC 222 (310)
Q Consensus 208 e~kQd~Tn~GV~~LC 222 (310)
|....-...-+..+.
T Consensus 89 ~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 89 ENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777777666663
No 154
>4ack_A TSSL; protein transport, microbial surface structures, virul factor; 2.15A {Francisella novicida} PDB: 4acl_A
Probab=36.59 E-value=1e+02 Score=27.50 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh
Q 021597 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (310)
Q Consensus 162 lde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~ 227 (310)
++-..+|.+.|++-+.+-+-|-++|..-=.+|+++|..+-.+|.. ...+..--.-++.+|.|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ir~~I~~~re~L~~-gysE~~~~~ilFAlcAlIDE 71 (185)
T 4ack_A 7 IEIILDIIKTTREIIEDNDNDNEKISYHRNNIRKSIFFLQEELLE-KYSETVCKYIVFPLLAYVDE 71 (185)
T ss_dssp HHHHHHHHHHHHHHTC---CCTTHHHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 344567888888888888888888888888999999988888888 77777777889999998864
No 155
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=36.53 E-value=1.3e+02 Score=22.17 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=36.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 021597 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (310)
Q Consensus 127 s~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~e 175 (310)
++=++.|.-+|+.|.+-+...|+.| ..||.++-+.++++..+-+-
T Consensus 8 ~eRve~m~~~l~Evnekv~~ik~sL----~~LD~~lg~Lqdlsal~v~t 52 (56)
T 3e7k_A 8 FERVEQMSIQIKEVGDRVNYIKRSL----QSLDSQIGHLQDLSALTVDT 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHH
Confidence 4558889999999999999998854 57888888888888876553
No 156
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=35.95 E-value=65 Score=28.00 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 021597 192 SVRDIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 192 ~v~~~V~~Le~Ki~~ie~kQd 212 (310)
+.+..+..|.+-+.+...+++
T Consensus 104 k~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 104 QAEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444
No 157
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=35.79 E-value=1.1e+02 Score=30.42 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 021597 143 SISAAQRQLSSKITSVDRDVNKIVEISQAT 172 (310)
Q Consensus 143 sL~~aKrhLsqRI~~vD~klde~~eis~~i 172 (310)
+|-..+|.+..+++.+..+.++ ++++|
T Consensus 41 ~ld~~~r~~~~~~~~l~~~rN~---~sk~i 67 (484)
T 3lss_A 41 EADKKWRRTQFLTEASKKLINI---CSKAV 67 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 3556678888888777765554 44444
No 158
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=35.51 E-value=1.4e+02 Score=23.53 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhHHhHHHHHHHHHHHhhccCC
Q 021597 164 KIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRARELENGR 232 (310)
Q Consensus 164 e~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~k----Qd~Tn~GV~~LC~f~~~~~~~~ 232 (310)
+.-.-.++=.+|+..+..++.+++.=+..+..+|..=+.-|++||++ ++....|...|-.+.+--+++|
T Consensus 11 ~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~r 83 (109)
T 3hd7_B 11 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 159
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.50 E-value=1.1e+02 Score=23.43 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHhHHHH
Q 021597 123 RRSLSDACNSVARQLEDV 140 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqV 140 (310)
++...+|...+.+..+.+
T Consensus 65 ~~~~~ea~~~L~~~~e~i 82 (117)
T 2zqm_A 65 KTTKDKAVAELKEKIETL 82 (117)
T ss_dssp EECHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHH
Confidence 345555555555444443
No 160
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.50 E-value=96 Score=23.42 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHhHHHHH
Q 021597 123 RRSLSDACNSVARQLEDVY 141 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs 141 (310)
++...+|...+.+.++.+.
T Consensus 60 ~~~~~e~~~~L~~~~e~i~ 78 (107)
T 1fxk_A 60 RVAKDELTEELQEKLETLQ 78 (107)
T ss_dssp EECHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHH
Confidence 4466666666665555444
No 161
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=34.71 E-value=2.3e+02 Score=25.83 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHhhhhhhH
Q 021597 125 SLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDV 162 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~-~aKrhLsqRI~~vD~kl 162 (310)
+..+.+..+.++++++.+.+- ..+++...||-.+.+++
T Consensus 168 ~~~~~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l 206 (339)
T 4ev6_A 168 SYSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTL 206 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 444555566666666555432 12333344444444433
No 162
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=34.41 E-value=8.4 Score=33.62 Aligned_cols=14 Identities=36% Similarity=0.387 Sum_probs=11.2
Q ss_pred eeeEcCcccceeec
Q 021597 9 TFLVGAGILTSVLA 22 (310)
Q Consensus 9 ~ILvGAG~~GSvl~ 22 (310)
+|+||||++|+.++
T Consensus 7 ViIVGaGpaGl~~A 20 (397)
T 3oz2_A 7 VLVVGGGPGGSTAA 20 (397)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECcCHHHHHHH
Confidence 68999999987543
No 163
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=34.17 E-value=1.4e+02 Score=23.99 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHHHHhH
Q 021597 139 DVYSSISAAQRQLSSKI 155 (310)
Q Consensus 139 qVs~sL~~aKrhLsqRI 155 (310)
||...|+.+-..|-+-+
T Consensus 29 QVQqELs~tfarLc~~V 45 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQV 45 (96)
T ss_dssp ------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 164
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=34.12 E-value=1.4e+02 Score=23.41 Aligned_cols=61 Identities=7% Similarity=0.040 Sum_probs=41.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhh--hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 134 ARQLEDVYSSISAAQRQLSSKITSVDR--DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 134 ~KqLeqVs~sL~~aKrhLsqRI~~vD~--klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
+.-++.--+-....-..++++|..+-. .-++-+.....++..+.++.+=|.++.-++.++.
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444555555555555666667766622 2266677788888888888888888888887764
No 165
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=33.67 E-value=74 Score=22.51 Aligned_cols=38 Identities=16% Similarity=0.420 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhH----HHHHHHHHHHHHHHHHhHhhhhhhH
Q 021597 125 SLSDACNSVARQL----EDVYSSISAAQRQLSSKITSVDRDV 162 (310)
Q Consensus 125 nms~Av~sv~KqL----eqVs~sL~~aKrhLsqRI~~vD~kl 162 (310)
-|..+|..+=.|| +.+|+.|-.-=.+++.|||.|+..+
T Consensus 6 dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 6 DLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 3455555544444 5677777777788888888887764
No 166
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=33.37 E-value=92 Score=24.70 Aligned_cols=60 Identities=13% Similarity=0.258 Sum_probs=25.5
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
|+.|.++|+.+...+++-..-.+.+.+=...-. .=.++| |-.++..-......||+.++.
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~-~nP~~G-D~~s~~~~L~e~~~kid~L~~ 76 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALKKMKDVYE-KTPQMG-DPASLEPQIAETLSNIERLKL 76 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-HCGGGC-CGGGSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccC-CHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665555444333222222221111 113444 444444444444444444443
No 167
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=33.25 E-value=2.8e+02 Score=26.49 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=28.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH
Q 021597 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN 163 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~kld 163 (310)
+.|..+-..-..++.++.++++.|...++.+..+|+.--+++.
T Consensus 64 ~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN 106 (463)
T 2d4y_A 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQIN 106 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777777777777777777666554433333
No 168
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=33.15 E-value=1.9e+02 Score=23.30 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhHHH---HHHHHHHHHHHHHHhH
Q 021597 126 LSDACNSVARQLED---VYSSISAAQRQLSSKI 155 (310)
Q Consensus 126 ms~Av~sv~KqLeq---Vs~sL~~aKrhLsqRI 155 (310)
|+|-.+++-..|+. -.+.|...|++|..-+
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l 34 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLL 34 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 44555555444443 2344555555544333
No 169
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=32.99 E-value=43 Score=26.61 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=15.5
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021597 149 RQLSSKITSVDRDVNKIVEISQATQEEV 176 (310)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV 176 (310)
..|-.||+.+..|+++|.+.....++.|
T Consensus 3 edLrrrI~~LkrkV~~q~~~i~~Lq~nv 30 (87)
T 1fzc_A 3 EDLRSRIEVLKRKVIEKVQHIQLLQKNV 30 (87)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899988888888776555555444
No 170
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=32.88 E-value=1.9e+02 Score=23.11 Aligned_cols=45 Identities=29% Similarity=0.483 Sum_probs=36.6
Q ss_pred hhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh
Q 021597 179 LRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (310)
Q Consensus 179 v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~~ 227 (310)
.+.-+..||+|+-.|+.....||--+. .|.-++.-..-||.+.++
T Consensus 35 lk~~L~Kig~Ei~~l~eLLn~~E~eV~----~Qe~~~~sLKEL~~s~e~ 79 (91)
T 4aj5_A 35 LKTVLNKIGDEIIVINELLNKLELEIQ----YQEQTNNSLKELCESLEE 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 345578899999999988888887664 588899999999998864
No 171
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=32.79 E-value=2.1e+02 Score=24.93 Aligned_cols=57 Identities=2% Similarity=-0.022 Sum_probs=30.1
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 021597 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 148 KrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
..++..|++.|..+-+...+.+..-+..+.+.. .+.+|..+++.+..-+...+..|.
T Consensus 187 ~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~-~~~~F~~~~~~l~~Wl~~~~~~l~ 243 (323)
T 3edv_A 187 ADDIQKRENEVLEAWKSLLDACESRRVRLVDTG-DKFRFFSMVRDLMLWMEDVIRQIE 243 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666655555555555555555444 244555555555554444444444
No 172
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.27 E-value=38 Score=27.33 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=34.0
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
+.+++..++..++....+-+.+++-+..||.+|....-
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l 47 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRAL 47 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66799999999999999999999999999999987443
No 173
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=31.87 E-value=1.7e+02 Score=22.27 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 021597 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
+-.+|+.+..++...++. .+........++..+|.++...-.|-+.+-++=..||--|.
T Consensus 15 Le~~l~e~E~~~~~~l~~-------~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 15 KEAKLRDLEDSLARERDT-------SRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344455555544443333 33344444666777777777776676666666666665553
No 174
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=31.87 E-value=1.1e+02 Score=25.75 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=11.7
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 021597 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (310)
Q Consensus 174 ~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (310)
|.|.++-.++-.+..++..++..|..|+..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l 51 (125)
T 4g2k_A 21 DKIEEILSKIYHIENEIARIKKLIGNLVSRL 51 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 175
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=31.85 E-value=2.2e+02 Score=23.63 Aligned_cols=79 Identities=9% Similarity=0.163 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH-----HHHH------H------HHHHhhhchhh
Q 021597 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS-----QATQ------E------EVTILRGRSKL 185 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis-----~~i~------~------eV~~v~~dl~~ 185 (310)
++.+..-+..+.+.|+...+++..-...+..+|...|+++|+...-. +.+. . .+..+-.++++
T Consensus 17 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~~~~~~~l~i~~~lER 96 (227)
T 1t72_A 17 KEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSDLER 96 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 44555555566666777777766555667777777777777653211 1111 0 12224467777
Q ss_pred hhhHHHHHHHHHHHHH
Q 021597 186 IGDEFQSVRDIVQTLE 201 (310)
Q Consensus 186 ig~Dv~~v~~~V~~Le 201 (310)
||+-..+|-..+..+.
T Consensus 97 IgD~a~nIa~~~~~~~ 112 (227)
T 1t72_A 97 MGDEAENIAERAILLA 112 (227)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7776666665554443
No 176
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=31.78 E-value=2.3e+02 Score=25.02 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=16.7
Q ss_pred hhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhHH
Q 021597 157 SVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEF 190 (310)
Q Consensus 157 ~vD~klde~-~eis~~i~~eV~~v~~dl~~ig~Dv 190 (310)
.+-.+|.-- .|+...+..++.++|..++-+..++
T Consensus 92 e~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel 126 (243)
T 2a01_A 92 EVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAEL 126 (243)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444444432 2344555555555555555554444
No 177
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=31.57 E-value=2.6e+02 Score=24.39 Aligned_cols=14 Identities=0% Similarity=0.209 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhcC
Q 021597 62 LAEVSSVQQELSHV 75 (310)
Q Consensus 62 ~aQV~~LaqElr~L 75 (310)
..+++.|.+..+++
T Consensus 55 ~~~~~~l~~~s~~I 68 (227)
T 1qu7_A 55 VQTMRDISTSSQKI 68 (227)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 178
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.22 E-value=1.8e+02 Score=24.95 Aligned_cols=63 Identities=8% Similarity=0.191 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhHHHHHHHH--------HHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 021597 125 SLSDACNSVARQLEDVYSSI--------SAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL--------~~aKrh---LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig 187 (310)
.....++.+.+-||.++.+| +.||+. +..|.+.|...+.+-..+....++++.+++.=+.++.
T Consensus 76 ~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 76 KAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555543 333332 4455555555566665566666666655554444443
No 179
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=31.12 E-value=1.1e+02 Score=26.78 Aligned_cols=52 Identities=6% Similarity=0.213 Sum_probs=30.7
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 021597 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (310)
Q Consensus 116 SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~e 167 (310)
-|.+|.+--.|.++...-...|.+=.+.|...+..|.++.+.|...++...+
T Consensus 33 ~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 33 ADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666665555555666666666655555555555544
No 180
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.02 E-value=1.6e+02 Score=27.73 Aligned_cols=9 Identities=0% Similarity=-0.547 Sum_probs=4.4
Q ss_pred HhhhheeeE
Q 021597 100 IVAVGYGYV 108 (310)
Q Consensus 100 iGavGYgYm 108 (310)
+--+||||-
T Consensus 342 V~L~gyC~s 350 (487)
T 3oja_A 342 DALKEQYRT 350 (487)
T ss_dssp HHHHHHTCC
T ss_pred hhHHHHhcC
Confidence 334566543
No 181
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=30.81 E-value=1.4e+02 Score=21.10 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhh
Q 021597 137 LEDVYSSISAAQRQLSSKITSV 158 (310)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~v 158 (310)
|.+|...|..+|.-+..-|+.|
T Consensus 4 l~~vq~~l~evk~iM~~NI~~v 25 (61)
T 3b5n_A 4 TAELQAEIDDTVGIMRDNINKV 25 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 182
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=30.62 E-value=11 Score=33.37 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=10.3
Q ss_pred eeeEcCcccceee
Q 021597 9 TFLVGAGILTSVL 21 (310)
Q Consensus 9 ~ILvGAG~~GSvl 21 (310)
++|||||++|..+
T Consensus 4 V~IVGaGpaGl~~ 16 (412)
T 4hb9_A 4 VGIIGAGIGGTCL 16 (412)
T ss_dssp EEEECCSHHHHHH
T ss_pred EEEECcCHHHHHH
Confidence 5788999998653
No 183
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=30.42 E-value=28 Score=30.12 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=13.6
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 021597 176 VTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (310)
Q Consensus 176 V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (310)
++++.-...++...++.++..+..|-.-+
T Consensus 111 I~~Le~s~~~L~k~~~eLq~~IdnlN~TL 139 (149)
T 1wyy_A 111 ISGINASVVNIQKEIDRLNEVAKNLNESL 139 (149)
T ss_dssp CTTCCCCCCCCHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333334444455555555555554433
No 184
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=30.00 E-value=55 Score=33.00 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsq---RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (310)
-+|..|--.|-|..+.+.+-+...+..+.. +|...++-|+..-... .-++|..-+.|++.+..++...+..+..+
T Consensus 43 G~lNra~v~VQ~NV~~Ld~N~~~~~~~~ne~~~~Vn~I~~~L~~~GD~~--vi~qI~~n~~dI~~Lk~~~~~~~~~l~~~ 120 (487)
T 2bsg_A 43 GSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDIE--ALAQIGINKKDISDLKTLTSEHTEILNGT 120 (487)
T ss_pred cccccchhhhhhhHHHHhhhHHHHHhhHHHHHHHHHHHHHHHhccccHH--HHHHHHhhHHHHHHHhcchhhhhhhhhhh
Confidence 456777777888888888888888877766 4444444444322211 33455555566666666666666666666
Q ss_pred HHHHHHhhhh
Q 021597 201 ESKLIEIEGK 210 (310)
Q Consensus 201 e~Ki~~ie~k 210 (310)
..++++|+..
T Consensus 121 ~~~~~ei~~d 130 (487)
T 2bsg_A 121 NNTVDSILAD 130 (487)
T ss_pred ccchHHHHhh
Confidence 6666666644
No 185
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=29.96 E-value=2.4e+02 Score=28.41 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=58.8
Q ss_pred Cchhhhhhh--hHHHHHHHHHHhHHHHHHHHHHHHH-----------------------------HHHHhHhhhhhhHHH
Q 021597 116 PDMMFATRR--SLSDACNSVARQLEDVYSSISAAQR-----------------------------QLSSKITSVDRDVNK 164 (310)
Q Consensus 116 SDlMfVTKR--nms~Av~sv~KqLeqVs~sL~~aKr-----------------------------hLsqRI~~vD~klde 164 (310)
.|-+|+.-| ++.++...+.+.+++..+.....++ ++.++-..++..+.=
T Consensus 329 ~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~i 408 (671)
T 1mqs_A 329 NDFFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNI 408 (671)
T ss_dssp SCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 799999887 7899999999999988887654332 566777788888888
Q ss_pred HHHHHHHHH----HHHHHhhhchhhhhhHHHHHHHHH
Q 021597 165 IVEISQATQ----EEVTILRGRSKLIGDEFQSVRDIV 197 (310)
Q Consensus 165 ~~eis~~i~----~eV~~v~~dl~~ig~Dv~~v~~~V 197 (310)
+.+|.+.++ +++.++..++- -+.|.+.|..++
T Consensus 409 a~~l~~~i~~~~l~~~~e~EQ~l~-~~~~~~~i~~ll 444 (671)
T 1mqs_A 409 FAALLSQLESKSLDTFFEVEQDPG-STKTRSRFLDIL 444 (671)
T ss_dssp HHHHHHHHHTTTCHHHHHHTSCCS-SHHHHHHHHHHT
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHh-cCchHHHHHHHH
Confidence 888888887 46777777763 233344444333
No 186
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=29.56 E-value=2e+02 Score=22.47 Aligned_cols=69 Identities=10% Similarity=0.176 Sum_probs=37.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 021597 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
.+++-++...+-..|+.++.++...++.....+ .....++..++.++..--.|-+.+-.+-..||-.|.
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i-------~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLLAKEKDNSRRML-------TDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666665555544444333 345556666666666666666666666666665543
No 187
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=29.42 E-value=1.8e+02 Score=26.69 Aligned_cols=38 Identities=3% Similarity=0.081 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 021597 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~ 165 (310)
|..+|+.+...+..+......+-++|..+|++ .+|...
T Consensus 132 L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~--~~L~~L 169 (261)
T 3rkg_A 132 FINVMSALETDFKLHSQICIQILNDLENEVNR--LKLRHL 169 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHH
Confidence 45677777777777877777788888877765 455544
No 188
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=29.37 E-value=86 Score=30.30 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 021597 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (310)
Q Consensus 144 L~~aKrhLsqRI~~vD~klde~~eis~~i~~e 175 (310)
|...-++|.+|++.++.+..++.+..+..+++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555554444444444333
No 189
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=29.26 E-value=1e+02 Score=21.86 Aligned_cols=9 Identities=11% Similarity=0.564 Sum_probs=3.9
Q ss_pred HHHhHhhhh
Q 021597 151 LSSKITSVD 159 (310)
Q Consensus 151 LsqRI~~vD 159 (310)
+++|++.++
T Consensus 35 vt~rle~lE 43 (47)
T 1aq5_A 35 VAKRIEALE 43 (47)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 190
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope Pro fusion protein, membrane, transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB: 2rfu_B* 3bt6_B*
Probab=29.25 E-value=25 Score=30.95 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=36.9
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHhHhhhhhhHHHHHH
Q 021597 121 ATRRSLSDACNSVARQLEDVYSS-------ISAAQRQLSSKITSVDRDVNKIVE 167 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~s-------L~~aKrhLsqRI~~vD~klde~~e 167 (310)
+-+++-.+|...++..|..+.+. +...=.++-+||.+|++++|+...
T Consensus 36 ad~ksTQ~aId~It~K~N~~iek~n~qfe~i~~ef~~~e~rI~~l~~~vdD~~~ 89 (176)
T 2rft_B 36 ADLKSTQEAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLRA 89 (176)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTCCCCCCCCCSSCCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999888542 333344888999999999998853
No 191
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1 PDB: 1mql_B* 1mqn_B* 2l4g_A
Probab=29.19 E-value=16 Score=33.27 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=37.6
Q ss_pred hhhhhHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHhHhhhhhhHHHHHH
Q 021597 121 ATRRSLSDACNSVARQLEDVYS-------SISAAQRQLSSKITSVDRDVNKIVE 167 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~-------sL~~aKrhLsqRI~~vD~klde~~e 167 (310)
+-+++-..|...+++.|..+.+ ++...=.+|-+||++|.+|+|+...
T Consensus 36 AD~kSTQ~AId~It~KlN~~iekmN~qfe~v~~ef~~~e~ri~~l~~~vdD~~~ 89 (221)
T 1mqm_B 36 ADLKSTQAAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKI 89 (221)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHSCCCEECSCCCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578889999999999988853 4555556788999999999998753
No 192
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=29.01 E-value=2.6e+02 Score=27.82 Aligned_cols=88 Identities=10% Similarity=0.047 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHH--HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 136 QLEDVYSSISAAQR--QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 136 qLeqVs~sL~~aKr--hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~---~ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
..|.|-++++.=.. .+-.+|-.+|.+--+...-.++++.+-+.+...+. .-+.|.+.+..-+..|..+|..+|..
T Consensus 14 n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~ 93 (485)
T 3qne_A 14 DPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEK 93 (485)
T ss_dssp CHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555542111 13456666666666665556666666555555443 34677888888899999999999988
Q ss_pred hhHHhHHHHHHHH
Q 021597 211 QDITTLGVKKLCD 223 (310)
Q Consensus 211 Qd~Tn~GV~~LC~ 223 (310)
..-...-+..++.
T Consensus 94 ~~~~~~~~~~~l~ 106 (485)
T 3qne_A 94 EAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 8777776666543
No 193
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.88 E-value=3e+02 Score=24.26 Aligned_cols=93 Identities=14% Similarity=0.194 Sum_probs=46.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-----------hhhhHHHHHHHHHHHHHH
Q 021597 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-----------LIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 134 ~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~-----------~ig~Dv~~v~~~V~~Le~ 202 (310)
-.-|+.+.++=..-..+|-.-|+....+.-+...-....+.|+...+.++. .+..++..++.....|-.
T Consensus 30 e~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~ 109 (189)
T 2v71_A 30 RDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHK 109 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444434444445555555555555554444444445444443333 334445555555556666
Q ss_pred HHHHhhhhhhHHhHHHHHHHHHHH
Q 021597 203 KLIEIEGKQDITTLGVKKLCDRAR 226 (310)
Q Consensus 203 Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (310)
+|-.+|-..|-=..-...+|.-.+
T Consensus 110 ~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 110 YVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhhHH
Confidence 666666555555555555554443
No 194
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=28.86 E-value=2.5e+02 Score=23.26 Aligned_cols=44 Identities=9% Similarity=0.168 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 021597 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (310)
Q Consensus 123 KRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~ 166 (310)
++.+..-+.-+.+.|+...+++..--..+..+|...|+++|+..
T Consensus 13 ~~~l~~M~~~v~~ml~~a~~al~~~d~~~a~~v~~~d~~iD~l~ 56 (217)
T 1xwm_A 13 HNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALE 56 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHH
Confidence 44555566666777777777777666778888888888887764
No 195
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.84 E-value=4.8e+02 Score=28.31 Aligned_cols=83 Identities=8% Similarity=0.112 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhHHHHHHH------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH----HhhhchhhhhhHHHHHHH
Q 021597 126 LSDACNSVARQLEDVYSS------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT----ILRGRSKLIGDEFQSVRD 195 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~s------L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~----~v~~dl~~ig~Dv~~v~~ 195 (310)
+.+-|+.+-+.++.+... +..--+.|...|+.++.++++...-.+.++++.. ++++.++++..+...+++
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444443322 2233357777888888777776655555555443 344555555556666666
Q ss_pred HHHHHHHHHHHhh
Q 021597 196 IVQTLESKLIEIE 208 (310)
Q Consensus 196 ~V~~Le~Ki~~ie 208 (310)
-+..||..+...+
T Consensus 1038 q~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 1038 EKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666665554443
No 196
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=28.77 E-value=2e+02 Score=22.04 Aligned_cols=67 Identities=9% Similarity=0.085 Sum_probs=38.7
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 021597 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (310)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQ 211 (310)
..-|-.|..-|+++-.-+++.+.=-+.=...=+.+-.|+..+..|++...-.-..||.||+++..--
T Consensus 13 ~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444433222211122234445566666778888888889999999886543
No 197
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=28.67 E-value=1.7e+02 Score=23.97 Aligned_cols=39 Identities=3% Similarity=0.143 Sum_probs=24.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 021597 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (310)
Q Consensus 184 ~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC 222 (310)
+.+...++.++.+...|+.++..++......+.=...|.
T Consensus 90 ~~L~~~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~Li 128 (146)
T 3hh0_A 90 EVLLAEQERIAKVLSHMDEMTKKFQKEERVNVALFSSFL 128 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHH
Confidence 344455666677777777777777766665555444444
No 198
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.44 E-value=2.8e+02 Score=26.61 Aligned_cols=22 Identities=9% Similarity=0.353 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHhh
Q 021597 136 QLEDVYSSISAAQRQLSSKITS 157 (310)
Q Consensus 136 qLeqVs~sL~~aKrhLsqRI~~ 157 (310)
.+.+-.+.|.+-|..+++.|..
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455666666677776665
No 199
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein, glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A {Influenza a virus} PDB: 2wrh_I*
Probab=28.32 E-value=42 Score=30.56 Aligned_cols=46 Identities=15% Similarity=0.345 Sum_probs=36.9
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHhHhhhhhhHHHHH
Q 021597 121 ATRRSLSDACNSVARQLEDVYSS-------ISAAQRQLSSKITSVDRDVNKIV 166 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~s-------L~~aKrhLsqRI~~vD~klde~~ 166 (310)
+-+++-..|...++..|..|.+. +...=.++-+||++|.+++|+..
T Consensus 36 AD~kSTQ~AId~It~KlN~liek~N~qf~~i~~EF~e~e~rI~~l~~~vdD~~ 88 (222)
T 2wrg_I 36 ADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGF 88 (222)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTSCCCCSCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45688899999999999888653 44445578899999999999875
No 200
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=28.30 E-value=2.8e+02 Score=23.91 Aligned_cols=76 Identities=9% Similarity=0.196 Sum_probs=41.6
Q ss_pred HHHhHHHHHHHHHHHHHHHH-HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH---HHHHHHHHHHHhh
Q 021597 133 VARQLEDVYSSISAAQRQLS-SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD---IVQTLESKLIEIE 208 (310)
Q Consensus 133 v~KqLeqVs~sL~~aKrhLs-qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~---~V~~Le~Ki~~ie 208 (310)
+...||.|-+.+..+=+.+. -+++.++..+.++.++....-+++.++=..+.+++.|.+.+.. -|..||.+.+.+.
T Consensus 99 L~~~lDdI~D~ie~~a~~l~l~~~~~~~~~~~~l~~~i~~~~~~l~~ai~~L~~~~~~~~~i~~~~~eI~~lE~eaD~l~ 178 (227)
T 3l39_A 99 LASCMDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDVY 178 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666655544443 3444555555555555555455555555555554435444444 4777777777665
No 201
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=28.27 E-value=2.6e+02 Score=23.34 Aligned_cols=82 Identities=12% Similarity=0.083 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~K 203 (310)
..+-...+.+-..+.++.+.+..-|.-++-+|-+..+==+==.++++.+-+++++++.....+.+.+..-+..-..+..|
T Consensus 6 ~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~~~~~~~~i~~Y~~~Ra~~v~K 85 (140)
T 1avo_B 6 EKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTK 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888888888888888888888777666666688899999999999999999988888888777777777
Q ss_pred HH
Q 021597 204 LI 205 (310)
Q Consensus 204 i~ 205 (310)
+.
T Consensus 86 ~~ 87 (140)
T 1avo_B 86 AA 87 (140)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 202
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=28.25 E-value=2.2e+02 Score=26.09 Aligned_cols=13 Identities=38% Similarity=1.045 Sum_probs=10.3
Q ss_pred cccccccCCcccc
Q 021597 294 NTNVIGDKNTGWV 306 (310)
Q Consensus 294 ~~~~~~~~~~~~~ 306 (310)
.+.|||..-|||-
T Consensus 174 G~kVvGaR~tG~T 186 (242)
T 3c9i_A 174 GKKVVGARQTGWT 186 (242)
T ss_dssp TEEEECSCBCCCC
T ss_pred CEEEecccccCcc
Confidence 4678888888885
No 203
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=28.23 E-value=3.5e+02 Score=24.82 Aligned_cols=39 Identities=3% Similarity=0.133 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH-HHHHHHhHhhhhhhHHH
Q 021597 126 LSDACNSVARQLEDVYSSISAA-QRQLSSKITSVDRDVNK 164 (310)
Q Consensus 126 ms~Av~sv~KqLeqVs~sL~~a-KrhLsqRI~~vD~klde 164 (310)
..+.+..+.+.+|.+.+.+-.. ++...+||-.+.+++-.
T Consensus 193 y~~~l~~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~ 232 (363)
T 2iub_A 193 YFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVE 232 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 3344444455555554443321 22333444444444333
No 204
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=28.20 E-value=3e+02 Score=23.93 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhc
Q 021597 61 LLAEVSSVQQELSH 74 (310)
Q Consensus 61 L~aQV~~LaqElr~ 74 (310)
+..+-+.+.+|+..
T Consensus 44 l~~~~~~f~~el~~ 57 (323)
T 3edv_A 44 LQERFREFARDTGN 57 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666654
No 205
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=28.16 E-value=1.4e+02 Score=27.17 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=12.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021597 147 AQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (310)
Q Consensus 147 aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (310)
.|+||+.|+..+-.++.....--+.|++|.
T Consensus 165 Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~ 194 (228)
T 3q0x_A 165 VKQFLAFRLSEVKGTCHDLSDDLSRTRDDR 194 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333333333
No 206
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=27.80 E-value=59 Score=24.10 Aligned_cols=33 Identities=6% Similarity=-0.035 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH
Q 021597 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (310)
Q Consensus 169 s~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (310)
..+-.....+++.-|..|+.-++..+.....-|
T Consensus 55 ~~~W~~~~~~l~~~L~~i~~~l~~a~~~y~~~d 87 (96)
T 3h6p_C 55 QTQWNQALEDLVRAYQSMSGTHESNTMAMLARD 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443333333
No 207
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=27.63 E-value=2.4e+02 Score=22.63 Aligned_cols=73 Identities=7% Similarity=0.008 Sum_probs=56.5
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhh--hhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 135 RQLEDVYSSISAAQRQLSSKITSV--DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 135 KqLeqVs~sL~~aKrhLsqRI~~v--D~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
...+..+.+...-+..+..+|+.. -+.+|++.+=+...++.|++.-.-|- -+|+..-+..+..|..++.+...
T Consensus 31 E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp--~YD~R~~q~~i~~L~~~l~e~r~ 105 (111)
T 2l3l_A 31 ENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLA--AYDLRQGQEALARLQAALAERRR 105 (111)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777778888888766 55688888888888888988776665 47899999999999999887643
No 208
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=27.57 E-value=1.7e+02 Score=21.05 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=22.0
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHH
Q 021597 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (310)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~ 202 (310)
|+++=.++|+++..+...|.+-=..+-.+|..=++-+...+..+...+.
T Consensus 3 rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~ 51 (65)
T 1gl2_C 3 HMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNE 51 (65)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHh
Confidence 4444455555555555555544444444444444444444433333333
No 209
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=27.52 E-value=63 Score=27.13 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=33.4
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~T 214 (310)
.+.+-|++|.++||.|.- +..-...|+|-+- +..+..=+..|+.+|.++..+|.+.
T Consensus 7 ~~K~Eiq~L~drLD~~~r-----Klaaa~~rgd~~~----i~qf~~E~~~l~k~I~~lk~~q~~~ 62 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRH-----QQADLSLVEAADK----YAELEKEKATLEAEIARLREVHSQK 62 (123)
T ss_dssp SHHHHHHHHHHHHHHHHH-----HHHHSCTTTCTTH----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHhCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777732 2222334444332 3445555667778888888887653
No 210
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=27.36 E-value=1.8e+02 Score=21.18 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=22.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhh
Q 021597 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDR 160 (310)
Q Consensus 130 v~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~ 160 (310)
.+.|-.|++.|...+..+...+..|-++|+.
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~ 36 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSD 36 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888877665553
No 211
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.31 E-value=1.1e+02 Score=21.73 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=19.2
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 176 V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
+..++.|--++..|-+++..++..|...|.++|.
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3333333344555556666666666666666664
No 212
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.00 E-value=2e+02 Score=21.63 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHH
Q 021597 166 VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (310)
Q Consensus 166 ~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~ 205 (310)
.........++..+|.++...-.|-+.+-++=..||--|.
T Consensus 32 q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 32 QDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3334444556666666666666666666666556665443
No 213
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.96 E-value=1.2e+02 Score=21.68 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=15.2
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl 183 (310)
+|..+++.|..+=....+.-+.-++++..+++.|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 214
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=26.79 E-value=2e+02 Score=24.01 Aligned_cols=141 Identities=9% Similarity=0.086 Sum_probs=79.9
Q ss_pred HHHHHHHhhhcCCCCCCCccchHHHHHHHHHHHH--HHhcC-CCceEEEeCCCCCCCCchhHHHHHHhhhheeeEEeccc
Q 021597 37 TLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQ--ELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGW 113 (310)
Q Consensus 37 ~lk~l~k~lk~~d~s~s~~~~~~dL~aQV~~Laq--Elr~L-sr~iTVvn~~ssg~gg~~y~l~a~iGavGYgYmwWKGw 113 (310)
.+++.+.-+++-++.|+ ....|.++.++|.+ +|+.. ..-...++++ ..|..-.+..++..+.-
T Consensus 16 ~L~~ql~El~~~~l~~g---E~eeLe~e~~rL~nae~l~~~~~~a~~~L~~~---e~~~~~~L~~a~~~L~~-------- 81 (175)
T 4abx_A 16 LLAFQVQEISEVSPDPG---EEEGLNTELSRLSNLHTIAQAAAGGVELLSDG---DLNAAGLIGEAVRALNA-------- 81 (175)
T ss_dssp HHHHHHHHHHHHCCCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHhCCCCCC---hHHHHHHHHHHHHCHHHHHHHHHHHHHHHhCC---cchHHHHHHHHHHHHHH--------
Confidence 44555655665555553 12228888888866 34443 3333344433 11222222122222210
Q ss_pred CcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 021597 114 KLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (310)
Q Consensus 114 s~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLs---qRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv 190 (310)
++++ .-.=..+.+.+.++--+|+.++..|+..-.++. .|++.|..+|+....+.+--...+.++-.-..++..++
T Consensus 82 -l~~~-d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~eL 159 (175)
T 4abx_A 82 -GAKY-DETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEEL 159 (175)
T ss_dssp -HHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred -HHHh-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0000 112346888888888999999999988777773 78999999999988887766544444444444444444
Q ss_pred HHH
Q 021597 191 QSV 193 (310)
Q Consensus 191 ~~v 193 (310)
..+
T Consensus 160 ~~l 162 (175)
T 4abx_A 160 AGL 162 (175)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 215
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.74 E-value=91 Score=25.60 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 021597 163 NKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (310)
Q Consensus 163 de~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~ 209 (310)
|+-..++...+.||..++..++.| ...-+..|..|.++|..+|+
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~ 54 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEA 54 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
No 216
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.71 E-value=1.8e+02 Score=21.04 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=27.3
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 172 i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
++..|..-..++.....++..++..++.|+..|+.+.
T Consensus 40 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 40 LSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555555667777888999999999999988764
No 217
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=26.67 E-value=1.4e+02 Score=21.40 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 021597 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (310)
Q Consensus 158 vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~ 198 (310)
|+.++...++-.+.|.+-|.++...++.+.-=++.+|+-+.
T Consensus 2 le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN 42 (51)
T 3kpe_A 2 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYID 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666667777777777777776776665543
No 218
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Probab=26.63 E-value=58 Score=28.64 Aligned_cols=47 Identities=6% Similarity=0.318 Sum_probs=37.1
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHhHhhhhhhHHHHHH
Q 021597 121 ATRRSLSDACNSVARQLEDVYSSI-------SAAQRQLSSKITSVDRDVNKIVE 167 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL-------~~aKrhLsqRI~~vD~klde~~e 167 (310)
+-+++-.+|...++..|..+.+-. ...=.++-+||.+|..++|+...
T Consensus 36 ad~~sTQ~aid~It~K~N~~iekmn~qf~~i~~ef~e~e~ri~~l~~~vdD~~~ 89 (176)
T 1jsd_B 36 ADSDSTQKAIDKITSKVNNIVDKMNKQYGIIDHEFSEIETRLNMINNKIDDQIQ 89 (176)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999998887543 23345788999999999998853
No 219
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=26.11 E-value=2.9e+02 Score=25.00 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 021597 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (310)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqR 154 (310)
.||.+.+...-+.+++.+.+..|..+|+..-++
T Consensus 128 e~K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~ 160 (320)
T 3m3w_A 128 ASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTA 160 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888889999999999998887664
No 220
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=26.08 E-value=2.3e+02 Score=21.93 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~v 158 (310)
+..+....++-....|+..+..|+++|...+...
T Consensus 43 s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~ 76 (113)
T 1xsv_A 43 SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKL 76 (113)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777888889999999998887654
No 221
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=26.08 E-value=27 Score=25.00 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=27.5
Q ss_pred eeEEecccCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 021597 106 GYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ 148 (310)
Q Consensus 106 gYmwWKGws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aK 148 (310)
-++.|||+.-+|--+-...||.++-. -|++.....+..|
T Consensus 22 YlVkWkGy~~~~~TWEp~~nl~~~~~----li~~f~~~~~~~k 60 (62)
T 3lwe_A 22 YKVRWKGYTSDDDTWEPEIHLEDCKE----VLLEFRKKIAENK 60 (62)
T ss_dssp EEEEETTSCGGGCEEEEHHHHTTCHH----HHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcCCCeeeHhHhhccHH----HHHHHHHhhHhhc
Confidence 46899999988999999999865433 3455555555444
No 222
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=25.97 E-value=1.7e+02 Score=20.33 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhhchhhh
Q 021597 166 VEISQATQEEVTILRGRSKLI 186 (310)
Q Consensus 166 ~eis~~i~~eV~~v~~dl~~i 186 (310)
..++..++.-++.+...++.+
T Consensus 65 ~~~shel~~~l~~i~~~~~~l 85 (115)
T 3zrx_A 65 AGVSHDLRTPLTRIRLATEMM 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 334444444444444444443
No 223
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.97 E-value=2.2e+02 Score=21.71 Aligned_cols=37 Identities=3% Similarity=0.059 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHH
Q 021597 168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (310)
Q Consensus 168 is~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki 204 (310)
....++.++.+++..+..+...+..+..-+..|+.++
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443333333333
No 224
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=25.61 E-value=1.1e+02 Score=28.87 Aligned_cols=35 Identities=3% Similarity=0.113 Sum_probs=24.2
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 021597 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLS 152 (310)
Q Consensus 118 lMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLs 152 (310)
.+|+.+=|+.+..+.+.++++++...++..++.|.
T Consensus 237 ~l~lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T 1lrz_A 237 LVPLAYINFDEYIKELNEERDILNKDLNKALKDIE 271 (426)
T ss_dssp ECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555667777777777777777777777765553
No 225
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=25.46 E-value=1.4e+02 Score=22.33 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 021597 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (310)
Q Consensus 169 s~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd 212 (310)
.=++++||.+++.+......=++..+++-..||.-+-++-..+|
T Consensus 9 VYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 9 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34568888888888888888888888888888876666655543
No 226
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=25.25 E-value=14 Score=33.98 Aligned_cols=16 Identities=38% Similarity=0.518 Sum_probs=12.2
Q ss_pred ceeeeEcCcccceeecc
Q 021597 7 KLTFLVGAGILTSVLAK 23 (310)
Q Consensus 7 Kv~ILvGAG~~GSvl~k 23 (310)
||+|| |||++|+.+++
T Consensus 18 kilvl-GaG~vG~~~~~ 33 (365)
T 3abi_A 18 KVLIL-GAGNIGRAIAW 33 (365)
T ss_dssp EEEEE-CCSHHHHHHHH
T ss_pred EEEEE-CCCHHHHHHHH
Confidence 55555 99999998764
No 227
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=25.23 E-value=1.9e+02 Score=29.51 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=30.4
Q ss_pred ccCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 021597 112 GWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 169 (310)
Q Consensus 112 Gws~SDlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis 169 (310)
|-..+|=.=-+.+.|.+-+.. ||.....-..--||=..=++..+..|++...+.
T Consensus 81 ~~~~pDPLsPgE~~~~~Kl~e----LE~e~k~d~~~~khn~~I~~k~g~~l~~v~~~~ 134 (526)
T 3iyk_A 81 GEEIPDPLSPGERGIQAKLKE----LEDEQRNELVRLKYNDKIKEKFGKELEEVYNFM 134 (526)
T ss_pred CCCCCCCCCHhHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788777777777766643 444444444444454444555555555554443
No 228
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=24.92 E-value=1.7e+02 Score=29.63 Aligned_cols=49 Identities=16% Similarity=0.390 Sum_probs=29.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHh---HhhhhhhHHHHHHHHHHHHHHHHHhh
Q 021597 132 SVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKIVEISQATQEEVTILR 180 (310)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsqR---I~~vD~klde~~eis~~i~~eV~~v~ 180 (310)
+++.+|.+|-.+|..++.||.+= ++.+...+++...-.-.+.+||..++
T Consensus 427 DISseL~~vn~sl~~a~~~I~~Sn~~L~~v~~~~~~~~~~~~~~~~~~~~~~ 478 (497)
T 2b9b_A 427 DISQNLAAVNKSLSDALQHLAQSDTYLSAIEDKIEEILSKIYHIENEIARIK 478 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHhhhhhhhHHHHHHH
Confidence 57888999999999999887542 33333444444333333444444433
No 229
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=24.88 E-value=4.6e+02 Score=26.02 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 021597 189 EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (310)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~L 221 (310)
|.+.+..-+..|..+|..+|....-...-+..+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666665555555554
No 230
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=24.80 E-value=53 Score=28.28 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=22.4
Q ss_pred eeeEEecccCcCchhhhhhhhHHHHHHH
Q 021597 105 YGYVWWKGWKLPDMMFATRRSLSDACNS 132 (310)
Q Consensus 105 YgYmwWKGws~SDlMfVTKRnms~Av~s 132 (310)
--|+.|||+|--+--|+|-.+|.. |..
T Consensus 48 EYlVKWKg~Sy~HnTWe~ee~L~~-~~g 74 (177)
T 2h1e_A 48 EFLIKWTDESHLHNTWETYESIGQ-VRG 74 (177)
T ss_dssp EEEEEETTSCGGGCEEECHHHHCS-CTT
T ss_pred EEEEEECCCccccCeecCHHHHhh-chH
Confidence 447889999999999999999975 443
No 231
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=24.66 E-value=92 Score=25.98 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=18.0
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021597 149 RQLSSKITSVDRDVNKIVEISQATQEEV 176 (310)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV 176 (310)
..|-.||+.|-.|+++|..-....++.|
T Consensus 25 edLrrrIe~LkrKV~~Qvq~i~~Lq~nV 52 (119)
T 1lwu_A 25 RELERRIIHLQRRINMQLQQLTLLQHNI 52 (119)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788887777777766555544444
No 232
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=24.66 E-value=16 Score=34.45 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=13.5
Q ss_pred eeeEcCcccceeecc
Q 021597 9 TFLVGAGILTSVLAK 23 (310)
Q Consensus 9 ~ILvGAG~~GSvl~k 23 (310)
+|+||+|.+|+|++.
T Consensus 20 ~IIVGsG~aG~v~A~ 34 (526)
T 3t37_A 20 IVIVGGGSAGSLLAA 34 (526)
T ss_dssp EEEECCSHHHHHHHH
T ss_pred EEEECccHHHHHHHH
Confidence 599999999999885
No 233
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=24.61 E-value=3.5e+02 Score=23.55 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=30.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 021597 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD 159 (310)
-.|+.+.+....+.|.+...+..|..+|+..-++-...+
T Consensus 114 kerK~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~ 152 (290)
T 3i2w_A 114 KERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTER 152 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777788888888888899999999988876655433
No 234
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=24.60 E-value=16 Score=34.45 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 138 eqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
.++.++|..+-+++.+.-|.--.++++-.++...++++| .++..+++.++.-+..||.|+.+..
T Consensus 5 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~ 68 (385)
T 3p8q_A 5 ALIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDL-------MKVQEELTKSGTRLFDLEQKLASGA 68 (385)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334444444444444333333333333334455555555 5555666667766677777776653
No 235
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=24.54 E-value=2e+02 Score=21.48 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 168 is~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
....+...+..+++.-..+|. ..+..+...||.-++.+.
T Consensus 37 ~~~~l~r~~HtLKGsa~~~G~--~~l~~la~~lE~~l~~~r 75 (105)
T 1tqg_A 37 LINEAFRALHTLKGMAGTMGF--SSMAKLCHTLENILDKAR 75 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHhcCh--HHHHHHHHHHHHHHHHHH
Confidence 444555556666666555553 355666666666555443
No 236
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=24.51 E-value=32 Score=25.51 Aligned_cols=25 Identities=32% Similarity=0.666 Sum_probs=21.1
Q ss_pred hheeeEEecccCcCchhhhhhhhHHH
Q 021597 103 VGYGYVWWKGWKLPDMMFATRRSLSD 128 (310)
Q Consensus 103 vGYgYmwWKGws~SDlMfVTKRnms~ 128 (310)
+=| ++.|||++-+|--|....||.+
T Consensus 29 ~~Y-lVKWkGy~~~~~TWEp~~~L~~ 53 (74)
T 2kvm_A 29 VEY-LVKWKGWPPKYSTWEPEEHILD 53 (74)
T ss_dssp EEE-EEEETTSCGGGCEEEETTTCSC
T ss_pred EEE-EEEEcCCCCccCeEeeHHHCCC
Confidence 334 7899999999999999999974
No 237
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=24.30 E-value=2.6e+02 Score=21.88 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 021597 122 TRRSLSDACNSVARQLEDVYSSISAAQ 148 (310)
Q Consensus 122 TKRnms~Av~sv~KqLeqVs~sL~~aK 148 (310)
++++|..|..+==+-=+-+++.|..+|
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr 37 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIR 37 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777776553333333444444443
No 238
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=24.30 E-value=2.8e+02 Score=22.30 Aligned_cols=66 Identities=11% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 021597 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (310)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v 193 (310)
.|-.....-.+...+.|.+.|..|..+|..+..++++..+.......+=..+...++....|++..
T Consensus 58 ~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 58 QAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 239
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=24.13 E-value=2.4e+02 Score=23.16 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~v 158 (310)
.|..-|.+++.+-+.|.++.+..+-.-|++ |+.|
T Consensus 4 ~nit~a~~~~n~Ai~~~~~gf~tv~~Al~k-iQdV 37 (109)
T 2ieq_A 4 NNIVASFSSVNDAITQTAEAIHTVTIALNK-IQDV 37 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 356677788888888888877777666643 4433
No 240
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=23.78 E-value=2.4e+02 Score=21.40 Aligned_cols=55 Identities=9% Similarity=0.219 Sum_probs=23.4
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
+++|++.+..+=.+..+-....++++.+-+..=++...+ ++.+.+.|++||+++.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~E---lk~~~e~Ld~KI~eL~ 59 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSN---LKTLLEILDGKIFELT 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHH
Confidence 344444444443333333333333443333333333322 2333455666666554
No 241
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=23.71 E-value=2.2e+02 Score=21.74 Aligned_cols=52 Identities=12% Similarity=0.108 Sum_probs=32.5
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHH
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le 201 (310)
+|-++||.+|.+|=+.-+==-.+-++|.+++..-..--.|-+--++++..+.
T Consensus 16 ~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~ 67 (90)
T 2vkl_A 16 TLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYS 67 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHH
Confidence 5777899999998877554455557787777543323344444444444443
No 242
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.66 E-value=1.3e+02 Score=21.25 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=23.5
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 021597 149 RQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (310)
Q Consensus 149 rhLsqRI~~vD~klde~~eis~~i~~eV~~ 178 (310)
..|...||+|.++|...++--+.|.+++.-
T Consensus 15 ~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 457788889988888888888888777644
No 243
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=23.53 E-value=1.5e+02 Score=23.03 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhh
Q 021597 186 IGDEFQSVRDIVQTLESKLIEIEGK 210 (310)
Q Consensus 186 ig~Dv~~v~~~V~~Le~Ki~~ie~k 210 (310)
.+++++-++.-+..|+.|+..+|.-
T Consensus 13 VREEVevLKe~I~EL~e~~~qLE~E 37 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNSQLERE 37 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888753
No 244
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=23.44 E-value=70 Score=28.59 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=8.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHH
Q 021597 151 LSSKITSVDRDVNKIVEISQAT 172 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i 172 (310)
|..+++.|..++++...+...+
T Consensus 81 L~~~~~~L~~~~~~L~~~~~~l 102 (249)
T 3qao_A 81 LDMQRHLLIEKKQRIETMLATL 102 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 245
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.40 E-value=2.4e+02 Score=21.24 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=15.8
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 021597 152 SSKITSVDRDVNKIVEISQATQEEVTI 178 (310)
Q Consensus 152 sqRI~~vD~klde~~eis~~i~~eV~~ 178 (310)
...++.+..++++..+-...+..++..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344566666666665555666666543
No 246
>4gip_D Fusion glycoprotein F1; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=23.30 E-value=58 Score=32.06 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=18.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
+++..|..|..+|..|+++| |+...+-+.+++++.++-.++-.|..++..++
T Consensus 346 DIsteL~~vn~~L~~A~~~l-----------~~Sn~iL~svn~Ki~~~~~~~~~~~~~~~~~~ 397 (409)
T 4gip_D 346 DISQNLAAVNKSLSDALQHL-----------AQSDTYLSAIEDKIEEILSKIYHIENEIARIK 397 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHTC----------------------
T ss_pred chhhhHHHHHHHHHHHHHHH-----------HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777665 34444444555555555555555555555444
No 247
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=23.11 E-value=1.1e+02 Score=28.56 Aligned_cols=54 Identities=11% Similarity=0.077 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 021597 168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (310)
Q Consensus 168 is~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~~ 226 (310)
+.+..++++.++.+-++.++.-+.++-.+|..=..-|+-+-.+|. ..-||-|+.
T Consensus 380 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 433 (463)
T 2xz3_A 380 LIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWLYIRLG-----FQSLCPTIN 433 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHhC-----cCccchhhc
Confidence 456666777777777788888888888888766666777766654 335666664
No 248
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=23.10 E-value=3.5e+02 Score=23.05 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHHH
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKr---hLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~~~V~~L 200 (310)
...+-+..++.+|...-..-..|-| .|..-||++.++|+..++--+.|++++...-.++..|..++..+..-|..|
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
No 249
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=23.05 E-value=3.4e+02 Score=22.81 Aligned_cols=67 Identities=12% Similarity=0.309 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH----HhHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhHHH
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQLS----SKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQ 191 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLs----qRI~~vD~klde~-~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (310)
......+.+.|.|+.+...|.--..++. +.++.+-.+|.=. .++-..++.++.++|..|.-+.+++.
T Consensus 79 ~~~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr 150 (185)
T 3r2p_A 79 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMR 150 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455666777778777766665555554 4444444444422 34555666777788888877777664
No 250
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.00 E-value=89 Score=23.92 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=21.2
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 151 LsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
|..=++.-+.+|.+..++++....++.+-...+.++...++.++
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333444445555555555555555555555555555444
No 251
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=22.91 E-value=18 Score=31.29 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.5
Q ss_pred eeeEcCcccceeec
Q 021597 9 TFLVGAGILTSVLA 22 (310)
Q Consensus 9 ~ILvGAG~~GSvl~ 22 (310)
+++||||++|..++
T Consensus 5 V~IIGaG~~Gl~~A 18 (336)
T 1yvv_A 5 IAIIGTGIAGLSAA 18 (336)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECCcHHHHHHH
Confidence 68999999987654
No 252
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=22.90 E-value=56 Score=21.48 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=18.1
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHH
Q 021597 171 ATQEEVTILRGRSKLIGDEFQSVRD 195 (310)
Q Consensus 171 ~i~~eV~~v~~dl~~ig~Dv~~v~~ 195 (310)
.|+.|+..++..+..|.+++..|++
T Consensus 6 aikqelaaikkelaaikfelaaikq 30 (34)
T 3r4h_A 6 AIKQELAAIKKELAAIKFELAAIKQ 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4667777777777788888777653
No 253
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=22.67 E-value=97 Score=20.74 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=11.8
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021597 154 KITSVDRDVNKIVEISQATQEEVTIL 179 (310)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v 179 (310)
|...|.+|+++...=-....+||..+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44445555555433333344444433
No 254
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=22.51 E-value=1.4e+02 Score=25.81 Aligned_cols=31 Identities=3% Similarity=-0.006 Sum_probs=16.8
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021597 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (310)
Q Consensus 146 ~aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (310)
..+..|.++++.++.++.+.+++.+.+++.+
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (278)
T 1r8e_A 79 ELFAFYTEQERQIREKLDFLSALEQTISLVK 109 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666655555555555555444
No 255
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=22.37 E-value=1.1e+02 Score=24.50 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=3.9
Q ss_pred HHHHhHhhhhhhHHHHHH
Q 021597 150 QLSSKITSVDRDVNKIVE 167 (310)
Q Consensus 150 hLsqRI~~vD~klde~~e 167 (310)
+|+..|+.+...++....
T Consensus 3 ~l~~~~~~l~~~~~~~~~ 20 (182)
T 3kqg_A 3 TLNAQIPELKSDLEKASA 20 (182)
T ss_dssp ----------CHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHH
Confidence 345555555555554433
No 256
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.20 E-value=3.2e+02 Score=23.53 Aligned_cols=6 Identities=17% Similarity=0.645 Sum_probs=2.3
Q ss_pred HHhHHH
Q 021597 213 ITTLGV 218 (310)
Q Consensus 213 ~Tn~GV 218 (310)
.+.+||
T Consensus 140 m~KeGi 145 (175)
T 3lay_A 140 MAQAGI 145 (175)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 333344
No 257
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=22.19 E-value=4.4e+02 Score=23.88 Aligned_cols=45 Identities=9% Similarity=0.148 Sum_probs=21.1
Q ss_pred HHHHHHHHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhH
Q 021597 145 SAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDE 189 (310)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~-~eis~~i~~eV~~v~~dl~~ig~D 189 (310)
...|..+.++++.+-.+|.-. .++-..+...+.+++..+.-.-.|
T Consensus 102 eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~~l~P~ae~ 147 (273)
T 3s84_A 102 DELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQD 147 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSS
T ss_pred HHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344455555555555554432 233444445555555555444333
No 258
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=22.04 E-value=85 Score=22.31 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=17.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 021597 132 SVARQLEDVYSSISAAQRQLSS 153 (310)
Q Consensus 132 sv~KqLeqVs~sL~~aKrhLsq 153 (310)
+++.+|.++..+|++|+.||.+
T Consensus 11 DISseL~~iNnsL~~A~~~I~e 32 (48)
T 2fyz_B 11 DISTELSKVNASLQNTVKYIKE 32 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888888754
No 259
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=21.92 E-value=2.9e+02 Score=23.72 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhchhhhhhHH
Q 021597 167 EISQATQEEVTILRGRSKLIGDEF 190 (310)
Q Consensus 167 eis~~i~~eV~~v~~dl~~ig~Dv 190 (310)
++.+.++.++.++|..|+-+..|+
T Consensus 99 ~lr~~l~kdlEelr~kL~P~~eEL 122 (191)
T 1nfn_A 99 AAQARLGADMEDVCGRLVQYRGEV 122 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 444456666666666666655554
No 260
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=21.90 E-value=1.5e+02 Score=22.98 Aligned_cols=16 Identities=0% Similarity=0.237 Sum_probs=6.9
Q ss_pred HHHHHHhHHHHHHHHH
Q 021597 130 CNSVARQLEDVYSSIS 145 (310)
Q Consensus 130 v~sv~KqLeqVs~sL~ 145 (310)
|..+-..|+.+...+.
T Consensus 14 v~~I~~~i~~i~~~v~ 29 (127)
T 1ez3_A 14 VEEIRGFIDKIAENVE 29 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 261
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=21.86 E-value=3.6e+02 Score=22.72 Aligned_cols=17 Identities=6% Similarity=0.110 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 021597 193 VRDIVQTLESKLIEIEG 209 (310)
Q Consensus 193 v~~~V~~Le~Ki~~ie~ 209 (310)
.-.-|..+|.+.+.++.
T Consensus 162 ~~~~i~~lE~~~D~l~~ 178 (227)
T 2olt_A 162 MINELDIIEEDTDDLQI 178 (227)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33346677777776653
No 262
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B* 2fk0_B* 3fku_B* 4fqi_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B* 3r2x_B* ...
Probab=21.86 E-value=62 Score=28.51 Aligned_cols=58 Identities=10% Similarity=0.192 Sum_probs=42.2
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 021597 119 MFATRRSLSDACNSVARQLEDVYSSISA-------AQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (310)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~sL~~-------aKrhLsqRI~~vD~klde~~eis~~i~~eV 176 (310)
|=+.+++-..|...+++.|-.|.+.... .=.+|.+||.+|+.|+|++..-.=.-.-|+
T Consensus 34 ~AAD~kSTQ~AId~It~KvN~iiekmn~qf~~v~~ef~~~e~ri~~l~~kvdD~~~DvwsYnAEL 98 (174)
T 3ku3_B 34 YAADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAEL 98 (174)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHTSSCCCCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHH
Confidence 5578999999999999999888764322 223577899999999999854433333443
No 263
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=21.81 E-value=4.7e+02 Score=24.06 Aligned_cols=67 Identities=12% Similarity=0.253 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 021597 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (310)
Q Consensus 124 Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~~v~ 194 (310)
..|.+-.++|...||- |.--|.=...-|..+|.|+++...+.+.+-+.+..+..+=.....|+..|.
T Consensus 152 ~~Lkk~~~~i~~~Lel----L~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~ 218 (242)
T 3uux_B 152 SALKSFSQTLVNSLEF----LNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQID 218 (242)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4566666666666654 333444445567778888877777777777777666655444444444333
No 264
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=21.71 E-value=78 Score=33.11 Aligned_cols=43 Identities=14% Similarity=0.346 Sum_probs=22.0
Q ss_pred ccCcCchhhh--hh----hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 021597 112 GWKLPDMMFA--TR----RSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (310)
Q Consensus 112 Gws~SDlMfV--TK----Rnms~Av~sv~KqLeqVs~sL~~aKrhLsqR 154 (310)
.|-|++-|=. || -=|.+|+.-|++++.++...++++|+++...
T Consensus 602 ~w~f~~~~~~~~~~~~~weil~~ti~kv~~rv~~~~~~~~~~~~~~~~~ 650 (771)
T 1h2v_C 602 NWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQ 650 (771)
T ss_dssp HHHTSGGGTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHcCchhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667775500 10 1256777777777777777777777776653
No 265
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.71 E-value=95 Score=20.78 Aligned_cols=28 Identities=7% Similarity=0.311 Sum_probs=16.1
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021597 154 KITSVDRDVNKIVEISQATQEEVTILRG 181 (310)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~ 181 (310)
|...+.+|+++...--..+.+||..++.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4555666666665555566666655543
No 266
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.61 E-value=25 Score=26.15 Aligned_cols=25 Identities=24% Similarity=0.686 Sum_probs=21.5
Q ss_pred hheeeEEecccCcCchhhhhhhhHHH
Q 021597 103 VGYGYVWWKGWKLPDMMFATRRSLSD 128 (310)
Q Consensus 103 vGYgYmwWKGws~SDlMfVTKRnms~ 128 (310)
+=| ++.|||++-.|--|....||.+
T Consensus 26 ~~Y-lVKWkGy~~~~~TWEp~~nl~~ 50 (74)
T 2d9u_A 26 LEY-LVKWRGWSSKHNSWEPEENILD 50 (74)
T ss_dssp EEE-EEEETTSCTTTCEEEEGGGCCC
T ss_pred EEE-EEEECCCCCccCccccHHHCCC
Confidence 335 8999999999999999999986
No 267
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=21.38 E-value=1.6e+02 Score=27.35 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh----hhhhhHHHH-HHHHHHHHHHHHHhhhchhhhh
Q 021597 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKIT----SVDRDVNKI-VEISQATQEEVTILRGRSKLIG 187 (310)
Q Consensus 125 nms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~----~vD~klde~-~eis~~i~~eV~~v~~dl~~ig 187 (310)
.....-+.+.+.++.+-.-|.-=...|..+++ .+-.+|.-. .|+-..++.++.++|..|.-+.
T Consensus 104 ~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py~ 171 (307)
T 2l7b_A 104 ELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQ 171 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 34444455556666655555444444433333 333333221 2344445556666666664333
No 268
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=21.34 E-value=1.3e+02 Score=24.53 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh-hchhhh--------------hhHHHH
Q 021597 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR-GRSKLI--------------GDEFQS 192 (310)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~-~dl~~i--------------g~Dv~~ 192 (310)
+.+...-+.|.++++.|..-..+|..||+++-+++.+...-.+..+.+..... .++..- +.|.+.
T Consensus 7 ~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~~~~i~g~~~~~~~~~~d~~~ 86 (171)
T 2zvf_A 7 EAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEFDSMKVVAEVVDADMQA 86 (171)
T ss_dssp HHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEESSSCEEEEEECSCCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEeCCEEEEEEEeCCCHHH
Q ss_pred HHHHHHHHHHH
Q 021597 193 VRDIVQTLESK 203 (310)
Q Consensus 193 v~~~V~~Le~K 203 (310)
++.++..|-.|
T Consensus 87 lr~~~~~l~~~ 97 (171)
T 2zvf_A 87 LQKLAERLAEK 97 (171)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcC
No 269
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=21.33 E-value=3.4e+02 Score=22.25 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=8.8
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 021597 129 ACNSVARQLEDVYSSISAA 147 (310)
Q Consensus 129 Av~sv~KqLeqVs~sL~~a 147 (310)
|...++.-+..|..+|..+
T Consensus 2 a~~nit~a~~~~n~Ai~~~ 20 (109)
T 2ieq_A 2 AINNIVASFSSVNDAITQT 20 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 3444444555554444433
No 270
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.31 E-value=99 Score=28.63 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=16.1
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021597 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (310)
Q Consensus 150 hLsqRI~~vD~klde~~eis~~i~~eV~~v~~ 181 (310)
.|..+++.+..+.+...+..+..++|+..+++
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555543333
No 271
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=21.22 E-value=5.6e+02 Score=24.93 Aligned_cols=67 Identities=4% Similarity=0.053 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh-----hchhh-----------hhhHHHHHHHHHHHHHHH
Q 021597 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR-----GRSKL-----------IGDEFQSVRDIVQTLESK 203 (310)
Q Consensus 140 Vs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~-----~dl~~-----------ig~Dv~~v~~~V~~Le~K 203 (310)
....|..||..|+ ++..++.+..-+...+++++.-+. ..+++ +.+=+..++.....|+..
T Consensus 27 A~~~l~~t~~~L~----~~~~~~~k~~Fl~~~l~~Q~~~L~~~ilr~~i~~~li~~e~~~~~f~~lv~~l~~~~~~L~~~ 102 (413)
T 4hpq_C 27 SNDHLTTTKLRIR----EWQKFQSKLHFVLDCIQQQTKFLSEILLREGIGRNLIEEEWSQTVLVRLVNDMKFWQNEITKM 102 (413)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554 477888889999999999977664 44443 333444555556667777
Q ss_pred HHHhhhh
Q 021597 204 LIEIEGK 210 (310)
Q Consensus 204 i~~ie~k 210 (310)
|..+...
T Consensus 103 ~~~Lr~T 109 (413)
T 4hpq_C 103 MNKLDNI 109 (413)
T ss_dssp HHHHHTS
T ss_pred HHHHhCC
Confidence 7766543
No 272
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=21.17 E-value=26 Score=32.29 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=11.2
Q ss_pred eeeEcCcccceeec
Q 021597 9 TFLVGAGILTSVLA 22 (310)
Q Consensus 9 ~ILvGAG~~GSvl~ 22 (310)
+|+||||++|-..+
T Consensus 13 VvIIGaGisGLsaA 26 (513)
T 4gde_A 13 VLVIGAGPTGLGAA 26 (513)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECCcHHHHHHH
Confidence 78999999886543
No 273
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.15 E-value=1.6e+02 Score=22.26 Aligned_cols=33 Identities=6% Similarity=0.025 Sum_probs=15.1
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 021597 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (310)
Q Consensus 176 V~~v~~dl~~ig~Dv~~v~~~V~~Le~Ki~~ie 208 (310)
++++...+..-.+-|+.++++|-.-...|++++
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~ 48 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNA 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555555554444444443
No 274
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=21.05 E-value=1.1e+02 Score=20.47 Aligned_cols=28 Identities=7% Similarity=0.150 Sum_probs=15.4
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021597 154 KITSVDRDVNKIVEISQATQEEVTILRG 181 (310)
Q Consensus 154 RI~~vD~klde~~eis~~i~~eV~~v~~ 181 (310)
|...+.+|+++...--...++||..++.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4455566666655555555566654443
No 275
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=20.97 E-value=35 Score=28.14 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=20.6
Q ss_pred eeEEecccCcCchhhhhhhhHHH
Q 021597 106 GYVWWKGWKLPDMMFATRRSLSD 128 (310)
Q Consensus 106 gYmwWKGws~SDlMfVTKRnms~ 128 (310)
-++.|||||-.+=-|-+..||..
T Consensus 60 YlVKWkG~s~~~nTWEp~enL~~ 82 (115)
T 2b2y_C 60 YLIKWKGWSHIHNTWETEETLKQ 82 (115)
T ss_dssp EEEEETTSCGGGCEEECHHHHHH
T ss_pred EEEEECCCCchhcccCCHHHcCC
Confidence 47999999999999999999875
No 276
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=20.96 E-value=3.6e+02 Score=25.16 Aligned_cols=65 Identities=8% Similarity=0.192 Sum_probs=38.5
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021597 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (310)
Q Consensus 117 DlMfVTKRnms~Av~sv~KqLeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~ 181 (310)
+-.=|.-+.|..+++...+--|+--..|...=..+..|+..+|+++++...-+..|.+||..++.
T Consensus 194 stDAVNv~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 258 (268)
T 2yo3_A 194 DTDAVNYAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKK 258 (268)
T ss_dssp TTSBCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456666676666666554444444444444445555556677777776666677777765554
No 277
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST cell membrane, HOST membrane, membrane, transmembrane, viral protein; HET: NAG; 2.60A {Influenza a virus} PDB: 3m5h_B* 3m5i_B* 3m5j_B* 4dj6_B* 4dj7_B* 4dj8_B* 4fqv_B 1ti8_B*
Probab=20.93 E-value=33 Score=30.43 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=44.2
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 021597 119 MFATRRSLSDACNSVARQLEDVYSS-------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (310)
Q Consensus 119 MfVTKRnms~Av~sv~KqLeqVs~s-------L~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v 179 (310)
|=+.+++-..|...+++.|-.|.+- +...=.++.+||.+|.+|+|++..=.=.-.-|+-.+
T Consensus 34 ~AAD~kSTQ~AId~IT~KvN~iIeKmN~qf~~i~~Ef~eve~ri~~l~~kvdD~~~DiWsYnaELLVl 101 (182)
T 3m5g_B 34 TAADYKSTQSAIDQITGKLNRLIGKTNQQFELIDNEFNEIEQQIGNVINWTRDAMTEIWSYNAELLVA 101 (182)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHSSCCCEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHH
Confidence 5578999999999999998887643 333345678899999999999854444444444333
No 278
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A
Probab=20.90 E-value=4.5e+02 Score=28.27 Aligned_cols=15 Identities=7% Similarity=0.262 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhcC
Q 021597 61 LLAEVSSVQQELSHV 75 (310)
Q Consensus 61 L~aQV~~LaqElr~L 75 (310)
|.+-++.|++.|+.+
T Consensus 576 L~~a~~~L~~~i~~~ 590 (1066)
T 1tr2_A 576 LQDSLKDLKARMQEA 590 (1066)
T ss_dssp HHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555554
No 279
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=20.80 E-value=45 Score=27.24 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=11.9
Q ss_pred HhHHHHHHHHHHH
Q 021597 214 TTLGVKKLCDRAR 226 (310)
Q Consensus 214 Tn~GV~~LC~f~~ 226 (310)
||+||.||.+|.+
T Consensus 69 TnEGieyLR~yLh 81 (105)
T 3u5c_K 69 TEEGVEYLREYLN 81 (105)
T ss_dssp CHHHHHHHHHHTC
T ss_pred chhhHHHHHHHhC
Confidence 9999999999983
No 280
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=20.61 E-value=3.8e+02 Score=22.44 Aligned_cols=21 Identities=0% Similarity=0.246 Sum_probs=11.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 021597 128 DACNSVARQLEDVYSSISAAQ 148 (310)
Q Consensus 128 ~Av~sv~KqLeqVs~sL~~aK 148 (310)
+-|..+...+++++..+....
T Consensus 47 ~~ve~i~~~i~~i~~~v~el~ 67 (279)
T 3c98_B 47 EQVEEIRGFIDKIAENVEEVK 67 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666555443
No 281
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=20.52 E-value=28 Score=35.67 Aligned_cols=12 Identities=50% Similarity=1.157 Sum_probs=10.1
Q ss_pred hhheeeEEeccc
Q 021597 102 AVGYGYVWWKGW 113 (310)
Q Consensus 102 avGYgYmwWKGw 113 (310)
.+-|+|.||||.
T Consensus 521 ivty~~f~wkgk 532 (584)
T 4dpv_Z 521 IVTYSDFWWKGK 532 (584)
T ss_dssp CCEEEEEEEEEE
T ss_pred EEEEeeEEEccE
Confidence 467999999995
No 282
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.46 E-value=4.2e+02 Score=22.99 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 021597 189 EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (310)
Q Consensus 189 Dv~~v~~~V~~Le~Ki~~ie~kQd~Tn~GV~~LC~f~ 225 (310)
+.+.++.++..||.-...++.+=+....-+..+=+|.
T Consensus 57 g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 57 DKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666555444333443443
No 283
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.43 E-value=2.7e+02 Score=20.77 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=28.7
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 021597 145 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (310)
Q Consensus 145 ~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~dl~~ig~Dv~ 191 (310)
.+-+..=.++|..|..++++..+....+..|...++..+..+..++.
T Consensus 21 RafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445667777777777777666666666666665555544443
No 284
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=20.42 E-value=2.8e+02 Score=20.81 Aligned_cols=26 Identities=8% Similarity=-0.026 Sum_probs=11.5
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHH
Q 021597 121 ATRRSLSDACNSVARQLEDVYSSISA 146 (310)
Q Consensus 121 VTKRnms~Av~sv~KqLeqVs~sL~~ 146 (310)
|+=-.|.++...+...-+++.+.|..
T Consensus 11 v~~~~l~~~a~~~~~~~~~i~~~l~~ 36 (103)
T 4i0x_B 11 FDLDHIEQVTSRARGFKEFVTENLDQ 36 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 285
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=20.06 E-value=4e+02 Score=22.78 Aligned_cols=58 Identities=5% Similarity=0.029 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh-chhhhhhHHHHHH
Q 021597 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG-RSKLIGDEFQSVR 194 (310)
Q Consensus 137 LeqVs~sL~~aKrhLsqRI~~vD~klde~~eis~~i~~eV~~v~~-dl~~ig~Dv~~v~ 194 (310)
.+..-+.+...-+.|..|+..+...+++..+....++...+++++ -++.+..+++.+.
T Consensus 120 ~~~~~~~l~~~L~~l~~~l~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 178 (202)
T 2p4w_A 120 INVKMRELAEFLHELNERIREIIEEKRELEEARILIETYIENTMRRLAEENRQIIEEIF 178 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345666666677777777777777777777777666655543 3445555544443
Done!