Query 021599
Match_columns 310
No_of_seqs 468 out of 2489
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 06:29:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.8 2.3E-19 7.9E-24 173.6 18.7 77 8-84 100-184 (437)
2 2dgu_A Heterogeneous nuclear r 99.8 2.4E-19 8.1E-24 139.3 12.4 80 6-85 7-86 (103)
3 2dnq_A RNA-binding protein 4B; 99.8 5E-19 1.7E-23 134.0 12.0 80 6-85 4-83 (90)
4 3beg_B Splicing factor, argini 99.8 1.7E-19 5.8E-24 143.3 9.6 73 8-80 14-87 (115)
5 2dgt_A RNA-binding protein 30; 99.8 4.2E-19 1.5E-23 134.9 11.1 80 6-85 6-85 (92)
6 2dnp_A RNA-binding protein 14; 99.8 3.7E-19 1.3E-23 134.7 10.7 80 5-84 4-83 (90)
7 2kvi_A Nuclear polyadenylated 99.8 2.9E-19 9.8E-24 137.1 9.8 84 2-85 2-86 (96)
8 4fxv_A ELAV-like protein 1; RN 99.8 3E-19 1E-23 138.2 9.5 74 8-81 17-98 (99)
9 1x4c_A Splicing factor, argini 99.8 1E-18 3.4E-23 137.0 12.3 79 7-85 12-96 (108)
10 2cpd_A Apobec-1 stimulating pr 99.8 1.9E-18 6.5E-23 133.1 12.1 81 5-85 10-92 (99)
11 3ex7_B RNA-binding protein 8A; 99.8 1.2E-18 4.1E-23 140.0 10.5 80 6-85 18-105 (126)
12 2dgx_A KIAA0430 protein; RRM d 99.8 2.3E-18 7.8E-23 132.1 10.6 78 7-84 6-92 (96)
13 1x4a_A Splicing factor, argini 99.8 3.4E-18 1.2E-22 134.0 11.6 80 6-85 18-102 (109)
14 2xnq_A Nuclear polyadenylated 99.8 2.6E-18 8.7E-23 132.3 10.2 77 6-82 18-95 (97)
15 1wf1_A RNA-binding protein RAL 99.8 3.6E-18 1.2E-22 134.1 10.8 78 6-83 23-101 (110)
16 2fy1_A RNA-binding motif prote 99.8 6.9E-18 2.4E-22 134.2 12.6 80 6-85 3-89 (116)
17 2do4_A Squamous cell carcinoma 99.8 3.9E-18 1.3E-22 131.5 10.7 82 3-84 10-98 (100)
18 2dnz_A Probable RNA-binding pr 99.8 6.8E-18 2.3E-22 128.7 11.9 78 8-85 3-88 (95)
19 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.3E-18 1.1E-22 142.6 11.1 78 8-85 37-122 (156)
20 2cq3_A RNA-binding protein 9; 99.8 6.6E-18 2.2E-22 130.9 11.8 81 5-85 10-96 (103)
21 1sjq_A Polypyrimidine tract-bi 99.8 2.9E-18 1E-22 134.0 9.8 81 5-85 11-95 (105)
22 1u6f_A Tcubp1, RNA-binding pro 99.8 6.7E-18 2.3E-22 137.9 12.2 80 6-85 38-125 (139)
23 1why_A Hypothetical protein ri 99.8 6.4E-18 2.2E-22 129.6 11.1 81 4-84 11-95 (97)
24 2cqi_A Nucleolysin TIAR; RNA r 99.7 1E-17 3.6E-22 129.7 12.2 80 5-84 10-95 (103)
25 2jvr_A Nucleolar protein 3; RN 99.7 2.4E-18 8.1E-23 136.0 8.7 75 8-82 26-105 (111)
26 2jvo_A Nucleolar protein 3; nu 99.7 3E-18 1E-22 134.6 9.1 79 6-84 27-105 (108)
27 2cqd_A RNA-binding region cont 99.7 1.4E-17 4.7E-22 131.9 13.0 79 5-84 12-98 (116)
28 2d9p_A Polyadenylate-binding p 99.7 5.8E-18 2E-22 131.2 10.5 80 6-85 11-96 (103)
29 3r27_A HnRNP L, heterogeneous 99.7 3.4E-18 1.2E-22 132.4 9.1 75 8-82 19-97 (100)
30 1x5u_A Splicing factor 3B subu 99.7 1.5E-17 5E-22 129.2 12.3 81 5-85 10-98 (105)
31 2cq0_A Eukaryotic translation 99.7 5.8E-18 2E-22 131.2 9.8 81 5-85 10-98 (103)
32 2dgv_A HnRNP M, heterogeneous 99.7 8.8E-18 3E-22 127.3 10.6 79 6-84 4-88 (92)
33 2dgo_A Cytotoxic granule-assoc 99.7 2.3E-17 7.8E-22 130.3 13.0 79 6-84 11-97 (115)
34 1x5s_A Cold-inducible RNA-bind 99.7 1.4E-17 4.7E-22 128.7 11.4 80 6-85 8-95 (102)
35 2dnh_A Bruno-like 5, RNA bindi 99.7 1.2E-17 4.3E-22 129.6 11.2 78 7-84 12-99 (105)
36 1whw_A Hypothetical protein ri 99.7 1.9E-17 6.4E-22 127.3 12.0 79 6-84 4-90 (99)
37 3bs9_A Nucleolysin TIA-1 isofo 99.7 7.7E-18 2.6E-22 126.2 9.1 76 7-82 3-86 (87)
38 3md1_A Nuclear and cytoplasmic 99.7 7.5E-18 2.6E-22 125.1 9.0 74 10-83 1-82 (83)
39 4f25_A Polyadenylate-binding p 99.7 7E-18 2.4E-22 133.8 9.2 75 9-83 4-84 (115)
40 1x4d_A Matrin 3; structural ge 99.7 4.7E-18 1.6E-22 132.3 8.0 77 7-83 12-93 (102)
41 2e5j_A Methenyltetrahydrofolat 99.7 1.2E-17 4E-22 128.2 10.1 77 6-83 15-95 (97)
42 2cpj_A Non-POU domain-containi 99.7 1.6E-17 5.5E-22 127.8 10.6 79 6-84 11-91 (99)
43 1p27_B RNA-binding protein 8A; 99.7 1.2E-17 4.1E-22 130.0 10.0 77 7-83 20-104 (106)
44 2wbr_A GW182, gawky, LD47780P; 99.7 9E-18 3.1E-22 126.3 8.9 73 8-80 5-79 (89)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.3E-17 4.4E-22 124.4 9.7 74 7-80 4-85 (85)
46 2ad9_A Polypyrimidine tract-bi 99.7 9.5E-18 3.2E-22 134.1 9.5 79 6-84 27-109 (119)
47 2dnm_A SRP46 splicing factor; 99.7 1.9E-17 6.6E-22 128.2 11.0 79 6-84 9-95 (103)
48 2cph_A RNA binding motif prote 99.7 2.5E-17 8.6E-22 128.2 11.6 79 6-84 11-99 (107)
49 4a8x_A RNA-binding protein wit 99.7 1.5E-17 5.1E-22 124.7 9.9 74 9-82 3-85 (88)
50 2cpf_A RNA binding motif prote 99.7 1.6E-17 5.3E-22 127.5 10.1 77 8-84 3-90 (98)
51 2cqb_A Peptidyl-prolyl CIS-tra 99.7 9.3E-18 3.2E-22 129.7 8.7 80 6-85 8-95 (102)
52 2dgs_A DAZ-associated protein 99.7 3.9E-17 1.3E-21 125.6 12.2 79 6-85 6-92 (99)
53 1x4g_A Nucleolysin TIAR; struc 99.7 2.4E-17 8.2E-22 129.2 11.1 78 7-84 22-101 (109)
54 3s8s_A Histone-lysine N-methyl 99.7 1.4E-17 4.7E-22 131.4 9.7 75 7-81 3-85 (110)
55 1x5t_A Splicing factor 3B subu 99.7 1.4E-17 4.6E-22 127.2 9.4 78 8-85 3-89 (96)
56 1wex_A Hypothetical protein (r 99.7 2.4E-17 8.2E-22 128.7 11.0 80 5-84 10-93 (104)
57 2ytc_A PRE-mRNA-splicing facto 99.7 2E-17 6.7E-22 123.5 9.9 75 6-80 8-85 (85)
58 1x4h_A RNA-binding protein 28; 99.7 3.6E-17 1.2E-21 128.2 11.8 79 6-84 11-103 (111)
59 2hvz_A Splicing factor, argini 99.7 3.2E-17 1.1E-21 126.5 11.3 75 11-85 1-78 (101)
60 2cpz_A CUG triplet repeat RNA- 99.7 1.9E-17 6.6E-22 130.8 10.1 80 6-85 21-108 (115)
61 2dgp_A Bruno-like 4, RNA bindi 99.7 4.6E-17 1.6E-21 126.6 11.9 79 6-84 9-98 (106)
62 3ulh_A THO complex subunit 4; 99.7 1.7E-17 5.8E-22 129.3 9.3 74 7-80 26-106 (107)
63 2err_A Ataxin-2-binding protei 99.7 1.2E-17 4.1E-22 131.2 8.4 77 6-82 25-107 (109)
64 1wi8_A EIF-4B, eukaryotic tran 99.7 2.7E-17 9.2E-22 127.7 10.2 78 6-85 11-97 (104)
65 2x1f_A MRNA 3'-END-processing 99.7 2.2E-17 7.4E-22 126.4 9.4 75 9-83 1-83 (96)
66 2do0_A HnRNP M, heterogeneous 99.7 7.7E-17 2.6E-21 127.0 12.4 79 4-82 9-94 (114)
67 2cqh_A IGF-II mRNA-binding pro 99.7 2.1E-17 7E-22 125.7 8.7 78 7-84 5-85 (93)
68 2div_A TRNA selenocysteine ass 99.7 4.4E-17 1.5E-21 125.2 10.5 77 7-83 6-95 (99)
69 1oo0_B CG8781-PA, drosophila Y 99.7 2.6E-17 8.9E-22 129.0 9.4 77 7-83 23-107 (110)
70 2cq1_A PTB-like protein L; RRM 99.7 2.9E-17 9.8E-22 127.6 9.4 79 6-84 11-93 (101)
71 2cqc_A Arginine/serine-rich sp 99.7 3E-17 1E-21 124.9 9.4 76 6-81 11-94 (95)
72 2lxi_A RNA-binding protein 10; 99.7 1E-17 3.5E-22 127.4 6.6 76 10-85 1-86 (91)
73 2cpe_A RNA-binding protein EWS 99.7 3.2E-17 1.1E-21 129.1 9.4 80 6-85 11-106 (113)
74 2dhg_A TRNA selenocysteine ass 99.7 1.1E-16 3.6E-21 124.1 12.2 79 6-84 5-92 (104)
75 2e5h_A Zinc finger CCHC-type a 99.7 2.8E-17 9.7E-22 124.9 8.7 75 6-80 12-94 (94)
76 2la4_A Nuclear and cytoplasmic 99.7 2.9E-17 1E-21 126.7 8.7 74 8-81 25-100 (101)
77 2kxn_B Transformer-2 protein h 99.7 4.2E-17 1.4E-21 132.2 9.8 78 5-82 41-126 (129)
78 1x5p_A Negative elongation fac 99.7 1.1E-16 3.7E-21 122.8 11.7 77 6-84 11-89 (97)
79 2ywk_A Putative RNA-binding pr 99.7 3.8E-17 1.3E-21 124.5 8.9 76 6-81 12-94 (95)
80 2la6_A RNA-binding protein FUS 99.7 6.4E-17 2.2E-21 124.5 10.3 76 5-80 8-99 (99)
81 2khc_A Testis-specific RNP-typ 99.7 2.3E-17 7.9E-22 130.9 7.9 75 6-80 36-118 (118)
82 1nu4_A U1A RNA binding domain; 99.7 5.5E-17 1.9E-21 124.1 9.6 78 6-83 4-90 (97)
83 2nlw_A Eukaryotic translation 99.7 8.5E-17 2.9E-21 125.4 10.4 76 7-82 12-100 (105)
84 2cpx_A Hypothetical protein FL 99.7 9.3E-17 3.2E-21 126.7 10.6 81 5-85 20-108 (115)
85 2jrs_A RNA-binding protein 39; 99.7 8.8E-17 3E-21 126.1 10.3 77 6-82 22-106 (108)
86 1whx_A Hypothetical protein ri 99.7 5.9E-17 2E-21 127.7 9.3 74 9-82 9-84 (111)
87 2fc9_A NCL protein; structure 99.7 3.8E-17 1.3E-21 126.1 8.0 80 6-85 11-94 (101)
88 2dis_A Unnamed protein product 99.7 8.5E-17 2.9E-21 125.7 9.9 78 7-84 5-94 (109)
89 3p5t_L Cleavage and polyadenyl 99.7 2.2E-17 7.5E-22 125.0 6.3 74 11-84 2-85 (90)
90 1s79_A Lupus LA protein; RRM, 99.7 6.9E-17 2.4E-21 125.8 9.1 76 4-80 5-87 (103)
91 2a3j_A U1 small nuclear ribonu 99.7 1.4E-16 4.9E-21 128.7 11.3 77 6-82 25-110 (127)
92 2dh8_A DAZ-associated protein 99.7 8.7E-17 3E-21 124.9 9.6 79 6-85 12-98 (105)
93 2dng_A Eukaryotic translation 99.7 1.4E-16 4.7E-21 123.5 10.6 78 6-85 11-96 (103)
94 1p1t_A Cleavage stimulation fa 99.7 6.5E-17 2.2E-21 125.3 8.7 76 8-83 6-89 (104)
95 2cpi_A CCR4-NOT transcription 99.7 3.6E-17 1.2E-21 128.8 7.1 77 8-84 13-103 (111)
96 2cqp_A RNA-binding protein 12; 99.7 3.6E-17 1.2E-21 125.4 6.8 77 6-82 11-95 (98)
97 3ns6_A Eukaryotic translation 99.7 4E-17 1.4E-21 126.2 6.6 75 7-81 3-92 (100)
98 1rk8_A CG8781-PA, CG8781-PA pr 99.7 8.7E-17 3E-21 135.4 9.3 77 8-84 70-154 (165)
99 2fc8_A NCL protein; structure 99.7 6.4E-17 2.2E-21 124.9 7.7 80 6-85 11-95 (102)
100 2krb_A Eukaryotic translation 99.7 1E-16 3.5E-21 118.8 8.5 67 10-76 1-80 (81)
101 2i2y_A Fusion protein consists 99.7 1.6E-16 5.4E-21 131.5 10.6 76 7-82 70-148 (150)
102 3ucg_A Polyadenylate-binding p 99.7 1.5E-16 5.2E-21 119.6 9.4 73 9-82 5-85 (89)
103 1x4f_A Matrin 3; structural ge 99.7 4.7E-17 1.6E-21 128.6 6.8 77 7-83 22-103 (112)
104 2lkz_A RNA-binding protein 5; 99.7 4E-17 1.4E-21 125.4 6.1 76 6-81 5-94 (95)
105 2kt5_A RNA and export factor-b 99.7 2.2E-16 7.4E-21 126.5 10.7 76 8-83 33-115 (124)
106 2e44_A Insulin-like growth fac 99.7 2.2E-16 7.4E-21 120.6 9.7 76 7-82 12-92 (96)
107 2cq4_A RNA binding motif prote 99.7 9.7E-17 3.3E-21 126.6 7.8 72 10-82 25-104 (114)
108 2e5g_A U6 snRNA-specific termi 99.7 3E-16 1E-20 119.6 10.0 75 8-83 6-83 (94)
109 2dgw_A Probable RNA-binding pr 99.7 3E-16 1E-20 118.7 9.9 77 6-84 6-89 (91)
110 2jwn_A Embryonic polyadenylate 99.7 1.9E-16 6.4E-21 126.7 9.1 74 10-84 36-117 (124)
111 2ek1_A RNA-binding protein 12; 99.7 4.2E-17 1.4E-21 124.3 4.9 74 7-80 12-93 (95)
112 1x4b_A Heterogeneous nuclear r 99.7 2.4E-16 8.2E-21 124.7 9.4 75 10-85 27-109 (116)
113 2bz2_A Negative elongation fac 99.7 2.2E-16 7.5E-21 126.5 9.3 78 4-83 33-112 (121)
114 3lqv_A PRE-mRNA branch site pr 99.7 3.8E-16 1.3E-20 123.3 10.5 76 7-82 5-85 (115)
115 2j76_E EIF-4B, EIF4B, eukaryot 99.7 8.9E-17 3E-21 124.1 6.6 75 6-82 15-98 (100)
116 3s7r_A Heterogeneous nuclear r 99.7 3.3E-16 1.1E-20 117.4 9.2 74 5-79 6-87 (87)
117 3n9u_C Cleavage and polyadenyl 99.7 2.6E-16 8.9E-21 131.6 9.4 73 9-81 54-136 (156)
118 2lea_A Serine/arginine-rich sp 99.7 1.6E-16 5.4E-21 129.7 7.9 77 8-84 45-129 (135)
119 1x4e_A RNA binding motif, sing 99.7 8.2E-17 2.8E-21 120.2 5.6 73 8-80 3-83 (85)
120 2lcw_A RNA-binding protein FUS 99.5 8.3E-18 2.8E-22 133.3 0.0 80 6-85 3-98 (116)
121 1wez_A HnRNP H', FTP-3, hetero 99.7 2.9E-16 9.9E-21 122.0 8.8 77 6-84 11-94 (102)
122 2ki2_A SS-DNA binding protein 99.7 9.2E-17 3.1E-21 121.2 5.7 72 11-83 2-81 (90)
123 2cq2_A Hypothetical protein LO 99.7 2.6E-16 8.7E-21 124.7 8.3 77 7-83 22-107 (114)
124 2f3j_A RNA and export factor b 99.6 5.2E-16 1.8E-20 132.4 10.8 75 8-82 86-167 (177)
125 1fjc_A Nucleolin RBD2, protein 99.6 2.6E-16 8.9E-21 120.1 7.9 78 7-84 13-93 (96)
126 2rs2_A Musashi-1, RNA-binding 99.6 4.1E-16 1.4E-20 122.4 9.0 79 4-83 19-105 (109)
127 2e5i_A Heterogeneous nuclear r 99.6 4.9E-16 1.7E-20 125.0 9.5 72 11-82 26-102 (124)
128 2hgn_A Heterogeneous nuclear r 99.6 1.3E-16 4.3E-21 131.1 6.1 76 7-84 43-125 (139)
129 1x5o_A RNA binding motif, sing 99.6 5.6E-16 1.9E-20 122.1 9.4 76 6-81 21-111 (114)
130 1sjr_A Polypyrimidine tract-bi 99.6 6.8E-16 2.3E-20 129.6 10.4 75 9-83 45-125 (164)
131 2kn4_A Immunoglobulin G-bindin 99.6 9.6E-16 3.3E-20 127.6 11.3 76 8-83 68-151 (158)
132 3q2s_C Cleavage and polyadenyl 99.6 3.2E-16 1.1E-20 139.1 8.9 72 9-80 67-148 (229)
133 1wel_A RNA-binding protein 12; 99.6 1.4E-16 4.7E-21 127.8 5.9 74 7-81 22-103 (124)
134 2cqg_A TDP-43, TAR DNA-binding 99.6 1.2E-15 4.1E-20 118.0 11.0 77 6-84 11-95 (103)
135 1wg5_A Heterogeneous nuclear r 99.6 6.8E-16 2.3E-20 120.0 9.6 76 6-82 11-94 (104)
136 2mss_A Protein (musashi1); RNA 99.6 2.9E-16 1E-20 114.4 6.9 67 12-79 1-75 (75)
137 2cpy_A RNA-binding protein 12; 99.6 2.5E-16 8.4E-21 124.6 7.0 76 6-82 11-94 (114)
138 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 5.7E-16 1.9E-20 126.1 9.4 73 7-79 60-140 (140)
139 2diu_A KIAA0430 protein; struc 99.6 5.1E-16 1.8E-20 117.9 8.4 73 10-84 9-86 (96)
140 1fj7_A Nucleolin RBD1, protein 99.6 1.7E-16 5.8E-21 122.4 5.9 77 7-84 14-97 (101)
141 2m2b_A RNA-binding protein 10; 99.6 3.1E-16 1E-20 127.1 7.6 77 7-84 20-110 (131)
142 2db1_A Heterogeneous nuclear r 99.6 3.1E-16 1.1E-20 124.9 7.2 75 6-81 13-97 (118)
143 1wg1_A KIAA1579 protein, homol 99.6 2.8E-16 9.4E-21 118.4 6.4 74 8-82 3-78 (88)
144 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.9E-16 1.3E-20 114.1 6.1 68 11-79 1-76 (77)
145 2hzc_A Splicing factor U2AF 65 99.6 1.2E-15 4.2E-20 114.0 8.7 70 8-78 4-86 (87)
146 3zzy_A Polypyrimidine tract-bi 99.6 1.2E-15 4E-20 123.6 8.3 73 10-82 28-106 (130)
147 2dnn_A RNA-binding protein 12; 99.6 6.4E-16 2.2E-20 121.6 6.5 72 8-81 14-92 (109)
148 3egn_A RNA-binding protein 40; 99.6 1E-15 3.5E-20 125.6 7.8 80 3-82 38-130 (143)
149 2hgl_A HNRPF protein, heteroge 99.6 1.1E-15 3.6E-20 125.1 7.8 75 6-81 40-124 (136)
150 2lmi_A GRSF-1, G-rich sequence 99.6 6.3E-16 2.2E-20 120.8 6.2 76 5-81 6-91 (107)
151 1wf0_A TDP-43, TAR DNA-binding 99.6 1E-15 3.5E-20 115.1 6.6 76 8-85 3-81 (88)
152 3d2w_A TAR DNA-binding protein 99.6 1.6E-15 5.5E-20 114.8 7.7 73 6-82 7-84 (89)
153 3tyt_A Heterogeneous nuclear r 99.6 1.8E-15 6.3E-20 131.9 9.1 75 8-82 2-80 (205)
154 1iqt_A AUF1, heterogeneous nuc 99.6 1.6E-15 5.5E-20 110.3 6.3 67 12-79 1-75 (75)
155 4f02_A Polyadenylate-binding p 99.6 5.1E-15 1.8E-19 129.3 9.7 77 6-82 11-95 (213)
156 2dha_A FLJ20171 protein; RRM d 99.6 3.8E-15 1.3E-19 119.7 7.3 74 7-81 20-104 (123)
157 2xs2_A Deleted in azoospermia- 99.6 2E-15 6.7E-20 116.6 5.1 74 7-82 6-86 (102)
158 4f02_A Polyadenylate-binding p 99.6 6.7E-15 2.3E-19 128.5 9.0 74 9-82 102-181 (213)
159 2hgm_A HNRPF protein, heteroge 99.6 8E-15 2.7E-19 118.2 8.2 72 7-80 39-119 (126)
160 3u1l_A PRE-mRNA-splicing facto 99.5 8.5E-15 2.9E-19 130.4 8.8 76 8-83 132-230 (240)
161 2adc_A Polypyrimidine tract-bi 99.5 1.6E-14 5.3E-19 127.6 10.3 76 7-82 31-110 (229)
162 3md3_A Nuclear and cytoplasmic 99.5 1.6E-14 5.6E-19 119.5 9.7 75 6-80 83-165 (166)
163 2qfj_A FBP-interacting repress 99.5 1.8E-14 6.3E-19 124.8 10.4 77 8-84 123-207 (216)
164 3pgw_A U1-A; protein-RNA compl 99.5 2.8E-14 9.7E-19 129.2 10.7 75 6-80 203-281 (282)
165 2yh0_A Splicing factor U2AF 65 99.5 2.1E-14 7.2E-19 122.8 9.3 77 8-84 112-196 (198)
166 1fxl_A Paraneoplastic encephal 99.5 2.8E-14 9.4E-19 118.3 9.7 74 10-83 2-83 (167)
167 1b7f_A Protein (SXL-lethal pro 99.5 2.1E-14 7.1E-19 119.5 8.7 75 9-83 2-84 (168)
168 1qm9_A Polypyrimidine tract-bi 99.5 2.1E-14 7.2E-19 123.3 8.2 74 9-82 2-79 (198)
169 1l3k_A Heterogeneous nuclear r 99.5 3.7E-14 1.3E-18 121.0 9.0 77 8-85 102-186 (196)
170 2cjk_A Nuclear polyadenylated 99.5 3.6E-14 1.2E-18 118.0 8.6 73 9-82 86-166 (167)
171 2g4b_A Splicing factor U2AF 65 99.5 4.2E-14 1.4E-18 118.2 8.9 73 7-79 91-171 (172)
172 2qfj_A FBP-interacting repress 99.5 5.3E-14 1.8E-18 121.9 9.9 73 10-82 28-108 (216)
173 3pgw_A U1-A; protein-RNA compl 99.5 5.8E-14 2E-18 127.2 10.5 77 6-82 5-90 (282)
174 2dit_A HIV TAT specific factor 99.5 8E-14 2.7E-18 109.7 9.9 78 6-83 11-103 (112)
175 2adc_A Polypyrimidine tract-bi 99.5 7.8E-14 2.7E-18 123.1 10.3 73 9-81 150-227 (229)
176 1qm9_A Polypyrimidine tract-bi 99.5 6.7E-14 2.3E-18 120.1 9.5 74 8-81 118-196 (198)
177 3md3_A Nuclear and cytoplasmic 99.5 6E-14 2.1E-18 116.1 8.5 73 11-83 1-80 (166)
178 1l3k_A Heterogeneous nuclear r 99.5 9.3E-14 3.2E-18 118.5 9.3 76 6-82 9-92 (196)
179 1b7f_A Protein (SXL-lethal pro 99.5 1.4E-13 4.6E-18 114.5 10.0 73 7-79 86-168 (168)
180 2j8a_A Histone-lysine N-methyl 99.5 5E-14 1.7E-18 112.9 7.0 70 11-80 3-94 (136)
181 2dnl_A Cytoplasmic polyadenyla 99.5 4.9E-14 1.7E-18 111.3 6.9 71 7-80 5-86 (114)
182 3sde_A Paraspeckle component 1 99.5 7.3E-14 2.5E-18 125.7 8.8 74 8-81 20-95 (261)
183 3nmr_A Cugbp ELAV-like family 99.5 1.2E-13 4.2E-18 115.3 9.4 72 8-79 93-174 (175)
184 1fje_B Nucleolin RBD12, protei 99.5 6.1E-14 2.1E-18 117.8 6.6 75 8-82 97-174 (175)
185 1fxl_A Paraneoplastic encephal 99.5 2.7E-13 9.4E-18 112.2 10.0 72 8-79 86-167 (167)
186 2pe8_A Splicing factor 45; RRM 99.4 2.1E-13 7.3E-18 106.4 8.4 74 8-81 6-93 (105)
187 2voo_A Lupus LA protein; RNA-b 99.4 1.8E-13 6.2E-18 118.2 8.4 71 10-81 109-186 (193)
188 3nmr_A Cugbp ELAV-like family 99.4 3.7E-13 1.3E-17 112.4 9.6 74 9-82 2-88 (175)
189 3tyt_A Heterogeneous nuclear r 99.4 3.4E-13 1.1E-17 117.5 8.3 71 9-79 122-204 (205)
190 2ghp_A U4/U6 snRNA-associated 99.4 3.5E-13 1.2E-17 122.6 8.7 75 7-82 207-291 (292)
191 2g4b_A Splicing factor U2AF 65 99.4 6.5E-13 2.2E-17 110.8 9.0 73 9-82 3-88 (172)
192 1fje_B Nucleolin RBD12, protei 99.4 1.5E-13 5.1E-18 115.4 4.9 76 6-82 9-91 (175)
193 2yh0_A Splicing factor U2AF 65 99.4 7.8E-13 2.7E-17 112.9 9.2 73 9-82 3-88 (198)
194 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.6E-12 1.2E-16 98.5 11.8 74 10-85 10-93 (100)
195 2cjk_A Nuclear polyadenylated 99.4 7.2E-13 2.5E-17 110.1 7.5 71 9-81 2-80 (167)
196 3smz_A Protein raver-1, ribonu 99.4 9.9E-13 3.4E-17 119.1 8.2 77 7-83 181-265 (284)
197 1owx_A Lupus LA protein, SS-B, 99.3 2.5E-12 8.5E-17 102.5 8.9 74 7-80 15-94 (121)
198 3tht_A Alkylated DNA repair pr 99.3 1.5E-12 5.1E-17 121.7 8.4 74 7-80 15-97 (345)
199 1jmt_A Splicing factor U2AF 35 99.3 4.1E-13 1.4E-17 104.6 3.7 66 14-79 19-103 (104)
200 2ghp_A U4/U6 snRNA-associated 99.3 2.1E-12 7.3E-17 117.4 8.7 76 9-84 116-199 (292)
201 3v4m_A Splicing factor U2AF 65 99.3 2.4E-12 8.3E-17 100.3 7.3 73 8-80 3-95 (105)
202 3smz_A Protein raver-1, ribonu 99.3 3.7E-12 1.3E-16 115.3 9.6 76 8-83 93-176 (284)
203 3sde_A Paraspeckle component 1 99.3 5.4E-12 1.8E-16 113.4 8.8 74 9-82 95-179 (261)
204 2dnr_A Synaptojanin-1; RRM dom 99.3 1.1E-11 3.8E-16 93.2 8.1 75 8-83 5-87 (91)
205 3ue2_A Poly(U)-binding-splicin 99.3 1E-11 3.4E-16 98.9 8.2 73 8-80 18-107 (118)
206 3s6e_A RNA-binding protein 39; 99.2 5.3E-11 1.8E-15 94.1 8.1 73 8-80 5-91 (114)
207 3ts2_A Protein LIN-28 homolog 99.1 5.5E-12 1.9E-16 104.2 0.8 120 25-144 2-140 (148)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 1.7E-10 5.8E-15 87.2 6.5 72 8-80 13-93 (95)
209 3dxb_A Thioredoxin N-terminall 98.6 5.7E-08 1.9E-12 84.8 7.2 59 22-80 141-211 (222)
210 2l9w_A U4/U6 snRNA-associated- 98.5 2.8E-07 9.6E-12 71.1 8.5 73 6-78 17-96 (117)
211 1wey_A Calcipressin 1; structu 98.2 3.5E-06 1.2E-10 64.6 6.2 73 9-81 4-83 (104)
212 2dhx_A Poly (ADP-ribose) polym 98.1 2.6E-05 9E-10 59.5 10.6 72 8-80 6-82 (104)
213 2ec7_A GAG polyprotein (PR55GA 98.0 9.6E-06 3.3E-10 53.8 5.5 42 100-142 5-46 (49)
214 2cqf_A RNA-binding protein LIN 98.0 1.8E-05 6.1E-10 55.4 6.6 42 102-143 8-49 (63)
215 2li8_A Protein LIN-28 homolog 97.9 9.8E-06 3.3E-10 58.6 4.7 44 100-143 23-66 (74)
216 2a51_A Nucleocapsid protein; s 97.9 1.1E-05 3.8E-10 50.8 4.0 38 103-141 2-39 (39)
217 2ihx_A Nucleocapsid (NC) prote 97.9 1.4E-05 4.6E-10 55.6 4.8 43 101-143 4-50 (61)
218 1cl4_A Protein (GAG polyprotei 97.8 6.7E-06 2.3E-10 57.0 2.5 42 102-143 2-50 (60)
219 1uw4_A UPF3X; nonsense mediate 97.8 3.8E-05 1.3E-09 57.7 6.5 61 11-71 2-72 (91)
220 2bl6_A Nucleocapsid protein P1 97.8 1.9E-05 6.6E-10 49.1 3.9 36 103-141 2-37 (37)
221 1a1t_A Nucleocapsid protein; s 97.8 2.6E-05 8.9E-10 52.9 4.4 41 101-142 12-52 (55)
222 1wwh_A Nucleoporin 35, nucleop 97.6 0.00015 5E-09 57.0 7.7 71 6-78 20-93 (119)
223 1whv_A Poly(A)-specific ribonu 97.4 0.00051 1.7E-08 51.8 7.5 60 6-65 11-70 (100)
224 2l08_A Regulator of nonsense t 97.3 0.00017 5.8E-09 54.6 4.1 73 8-80 7-94 (97)
225 3ctr_A Poly(A)-specific ribonu 97.2 0.00044 1.5E-08 52.3 5.0 53 11-65 7-60 (101)
226 3p3d_A Nucleoporin 53; structu 97.0 0.00054 1.9E-08 54.5 4.4 71 8-80 5-97 (132)
227 3nyb_B Protein AIR2; polya RNA 97.0 0.00044 1.5E-08 50.9 3.2 39 104-142 27-65 (83)
228 1a6b_B Momulv, zinc finger pro 96.8 0.0014 4.7E-08 41.3 3.8 25 97-121 6-30 (40)
229 2lli_A Protein AIR2; RNA surve 96.3 0.0036 1.2E-07 49.4 4.3 42 102-143 43-84 (124)
230 1u6p_A GAG polyprotein; MLV, A 96.2 0.0035 1.2E-07 42.5 3.3 25 97-121 19-43 (56)
231 1dsq_A Nucleic acid binding pr 96.2 0.0028 9.7E-08 35.9 2.3 19 102-120 3-21 (26)
232 2lli_A Protein AIR2; RNA surve 96.1 0.0057 1.9E-07 48.3 4.8 41 101-141 64-123 (124)
233 3pq1_A Poly(A) RNA polymerase; 96.0 0.0037 1.3E-07 60.3 3.5 51 11-62 54-107 (464)
234 1nc8_A Nucleocapsid protein; H 95.3 0.013 4.6E-07 34.0 2.8 20 101-120 6-25 (29)
235 2g0c_A ATP-dependent RNA helic 95.0 0.074 2.5E-06 37.7 6.8 68 12-80 2-75 (76)
236 2i2y_A Fusion protein consists 94.4 0.0098 3.3E-07 47.9 0.9 38 43-81 12-50 (150)
237 4eyt_A Telomerase associated p 94.1 0.24 8.2E-06 36.6 7.7 58 8-65 10-67 (129)
238 2ysa_A Retinoblastoma-binding 94.1 0.029 1E-06 37.7 2.6 20 101-120 7-26 (55)
239 2li8_A Protein LIN-28 homolog 93.8 0.028 9.6E-07 40.2 2.2 33 110-142 2-43 (74)
240 3nyb_B Protein AIR2; polya RNA 93.8 0.027 9.3E-07 41.2 2.1 38 102-142 6-43 (83)
241 2kn4_A Immunoglobulin G-bindin 91.9 0.053 1.8E-06 43.7 1.5 25 44-68 13-37 (158)
242 1a6b_B Momulv, zinc finger pro 91.8 0.13 4.4E-06 32.2 2.8 22 123-144 10-31 (40)
243 1u6p_A GAG polyprotein; MLV, A 91.3 0.13 4.5E-06 34.6 2.7 23 122-144 22-44 (56)
244 1dsq_A Nucleic acid binding pr 90.3 0.17 5.8E-06 28.4 2.2 19 124-142 3-21 (26)
245 3d45_A Poly(A)-specific ribonu 89.8 0.64 2.2E-05 45.2 7.2 54 11-65 441-494 (507)
246 1cl4_A Protein (GAG polyprotei 88.9 0.3 1E-05 33.0 3.0 21 101-121 30-50 (60)
247 1nc8_A Nucleocapsid protein; H 88.2 0.39 1.3E-05 27.5 2.7 20 123-142 6-25 (29)
248 2cqf_A RNA-binding protein LIN 86.2 0.52 1.8E-05 32.3 3.0 21 101-121 29-49 (63)
249 2a51_A Nucleocapsid protein; s 85.3 0.48 1.7E-05 29.0 2.2 19 101-119 21-39 (39)
250 2ihx_A Nucleocapsid (NC) prote 85.2 0.47 1.6E-05 32.2 2.3 21 101-121 30-50 (61)
251 2bl6_A Nucleocapsid protein P1 83.4 0.47 1.6E-05 28.7 1.5 18 102-119 20-37 (37)
252 2ec7_A GAG polyprotein (PR55GA 82.0 0.84 2.9E-05 29.5 2.4 19 102-120 28-46 (49)
253 1a1t_A Nucleocapsid protein; s 80.8 0.93 3.2E-05 29.9 2.3 20 101-120 33-52 (55)
254 2cu1_A Mitogen-activated prote 78.0 4.1 0.00014 30.5 5.2 63 17-80 23-86 (103)
255 3pgw_S U1-70K; protein-RNA com 77.3 9.4 0.00032 36.1 9.1 24 50-75 147-170 (437)
256 3ts2_A Protein LIN-28 homolog 77.3 1.4 4.7E-05 35.6 2.7 21 101-121 119-139 (148)
257 2ysa_A Retinoblastoma-binding 76.7 1.4 4.8E-05 29.4 2.2 20 122-141 6-25 (55)
258 2npt_B Mitogen-activated prote 72.4 13 0.00046 27.4 6.7 50 17-66 35-85 (100)
259 2jrh_A Mitogen-activated prote 68.5 18 0.00061 26.4 6.5 63 17-80 19-82 (94)
260 2c60_A Human mitogen-activated 68.4 15 0.00051 27.5 6.2 50 17-66 46-96 (111)
261 3fry_A Probable copper-exporti 63.8 19 0.00064 24.0 5.9 54 10-64 6-61 (73)
262 4e8u_A Putative uncharacterize 60.0 12 0.0004 30.9 4.8 52 11-62 13-81 (172)
263 2e5p_A Protein PHF1, PHD finge 50.2 7.4 0.00025 26.7 1.7 21 34-54 27-47 (68)
264 3j21_T 50S ribosomal protein L 49.5 43 0.0015 24.2 5.9 50 15-64 27-83 (86)
265 3dxs_X Copper-transporting ATP 46.1 59 0.002 21.2 6.2 54 11-64 4-63 (74)
266 3lpe_A Putative transcription 45.7 60 0.0021 23.4 6.3 45 23-67 21-73 (92)
267 2kcm_A Cold shock domain famil 44.8 5.5 0.00019 28.0 0.4 46 35-80 3-53 (74)
268 2kpo_A Rossmann 2X2 fold prote 44.7 19 0.00064 25.7 3.2 49 22-75 33-82 (110)
269 2m0o_A PHD finger protein 1; t 43.1 11 0.00037 26.6 1.7 21 34-54 44-64 (79)
270 1vq8_S 50S ribosomal protein L 41.8 51 0.0017 23.7 5.3 48 14-61 25-79 (85)
271 2ofg_X Zinc-transporting ATPas 41.5 98 0.0034 22.4 7.4 54 11-64 10-69 (111)
272 1cqm_A Ribosomal protein S6; a 41.4 42 0.0014 24.7 4.9 49 12-62 6-76 (101)
273 2l3m_A Copper-ION-binding prot 41.3 66 0.0023 20.3 6.6 54 11-64 7-66 (71)
274 3a43_A HYPD, hydrogenase nicke 40.2 30 0.001 27.2 4.2 56 36-112 25-81 (139)
275 4a4j_A Pacszia, cation-transpo 39.8 61 0.0021 20.7 5.3 53 11-63 4-61 (69)
276 3u5e_X 60S ribosomal protein L 39.3 51 0.0018 26.1 5.3 47 17-63 85-138 (142)
277 2exu_A Transcription initiatio 38.7 88 0.003 26.2 7.1 32 37-68 139-173 (200)
278 2zkr_s 60S ribosomal protein L 38.2 60 0.002 26.1 5.6 49 15-63 97-152 (156)
279 3pc6_A DNA repair protein XRCC 38.2 42 0.0014 25.0 4.5 37 1-37 1-37 (104)
280 2okq_A Hypothetical protein YB 37.9 60 0.0021 25.6 5.5 36 27-62 50-108 (141)
281 4a17_R RPL23A, 60S ribosomal p 37.2 56 0.0019 26.1 5.3 46 18-63 94-146 (150)
282 1vd2_A Protein kinase C, IOTA 37.2 56 0.0019 23.7 4.9 52 13-64 17-74 (89)
283 3h7h_B Transcription elongatio 37.1 1.1E+02 0.0037 22.8 6.7 33 36-68 40-75 (106)
284 2e5q_A PHD finger protein 19; 37.1 6.8 0.00023 26.5 -0.1 21 34-54 25-45 (63)
285 2xmw_A PACS-N, cation-transpor 36.6 78 0.0027 19.8 6.6 54 11-64 5-63 (71)
286 3a0j_A Cold shock protein; OB- 36.6 6.4 0.00022 27.5 -0.3 21 34-54 3-23 (73)
287 3iz5_X 60S ribosomal protein L 36.2 49 0.0017 26.5 4.8 47 17-63 95-148 (152)
288 3aqq_A Calcium-regulated heat 35.9 5.5 0.00019 32.0 -0.9 47 33-79 63-112 (147)
289 2j5a_A 30S ribosomal protein S 35.7 43 0.0015 25.1 4.2 49 12-62 12-83 (110)
290 2cfx_A HTH-type transcriptiona 35.6 1.1E+02 0.0039 23.3 7.0 43 24-66 78-124 (144)
291 1yg0_A COP associated protein; 35.5 77 0.0026 19.5 6.2 53 12-64 4-61 (66)
292 1x60_A Sporulation-specific N- 35.5 76 0.0026 21.6 5.4 64 6-69 5-71 (79)
293 2g9o_A Copper-transporting ATP 34.5 69 0.0023 22.2 5.1 54 11-64 5-64 (90)
294 2cg4_A Regulatory protein ASNC 34.3 1.3E+02 0.0046 23.0 7.3 49 17-65 75-128 (152)
295 1q8l_A Copper-transporting ATP 32.7 1.1E+02 0.0038 20.4 7.6 55 10-64 10-70 (84)
296 2kt2_A Mercuric reductase; nme 32.5 93 0.0032 19.4 7.3 53 11-63 2-59 (69)
297 2lsl_A Telomerase associated p 38.1 9.8 0.00033 28.2 0.0 57 9-65 17-98 (137)
298 1aw0_A Menkes copper-transport 31.0 89 0.003 19.6 4.9 54 11-64 5-64 (72)
299 2cyy_A Putative HTH-type trans 30.9 1.6E+02 0.0053 22.6 7.1 48 17-65 74-125 (151)
300 2od0_A Hypothetical protein VP 30.5 41 0.0014 24.8 3.4 26 22-47 4-29 (105)
301 2k5n_A Putative cold-shock pro 30.3 22 0.00077 24.8 1.7 47 34-80 4-52 (74)
302 2eqj_A Metal-response element- 30.1 24 0.00081 24.2 1.7 20 35-54 32-51 (66)
303 1cpz_A Protein (COPZ); copper 29.8 1E+02 0.0034 19.0 8.3 54 11-64 2-61 (68)
304 2kyz_A Heavy metal binding pro 29.8 88 0.003 19.7 4.7 52 11-63 3-56 (67)
305 2d8m_A DNA-repair protein XRCC 29.6 37 0.0012 26.0 3.0 54 8-62 23-78 (129)
306 3swz_A Steroid 17-alpha-hydrox 29.6 96 0.0033 28.5 6.6 59 12-72 16-78 (494)
307 2e1c_A Putative HTH-type trans 29.1 1.6E+02 0.0056 23.4 7.1 47 17-64 94-144 (171)
308 1osd_A MERP, hypothetical prot 28.9 1.1E+02 0.0037 19.2 7.5 54 11-64 5-64 (72)
309 1y3j_A Copper-transporting ATP 28.9 1.1E+02 0.0038 19.7 5.3 54 11-64 5-64 (77)
310 2d74_B Translation initiation 28.9 1.1E+02 0.0039 24.2 5.9 60 1-62 32-98 (148)
311 3i2z_B RNA chaperone, negative 28.7 10 0.00034 26.3 -0.4 22 33-54 6-27 (71)
312 3fut_A Dimethyladenosine trans 28.5 50 0.0017 28.9 4.1 29 10-39 110-138 (271)
313 4bby_A Alkyldihydroxyacetoneph 28.5 32 0.0011 34.2 3.1 48 17-64 350-408 (658)
314 3cjk_B Copper-transporting ATP 28.3 1.2E+02 0.004 19.3 7.0 54 11-64 4-63 (75)
315 4hcz_A PHD finger protein 1; p 28.2 27 0.00094 23.2 1.7 21 34-54 21-41 (58)
316 2yh5_A DAPX protein, BAMC; lip 28.1 42 0.0014 25.9 3.1 48 9-56 12-60 (127)
317 1g6p_A Cold shock protein TMCS 27.9 12 0.00041 25.5 -0.1 20 35-54 3-22 (66)
318 1yjr_A Copper-transporting ATP 27.8 1.2E+02 0.004 19.2 7.5 55 9-63 4-64 (75)
319 1i1g_A Transcriptional regulat 27.7 1.2E+02 0.0041 22.8 5.8 43 23-65 76-123 (141)
320 1p6t_A Potential copper-transp 26.9 1.8E+02 0.006 21.7 6.8 51 13-63 78-134 (151)
321 3ulj_A LIN28B, DNA-binding pro 26.3 23 0.0008 25.8 1.2 19 33-51 9-27 (90)
322 2w7a_A LINE-1 ORF1P; RNA-bindi 26.2 54 0.0018 24.4 3.2 32 46-77 64-98 (100)
323 3uzu_A Ribosomal RNA small sub 26.2 28 0.00096 30.6 2.0 31 10-40 114-144 (279)
324 2lss_A Cold shock-like protein 32.1 14 0.00048 25.4 0.0 20 34-53 6-25 (70)
325 1wfq_A UNR protein; beta-barre 26.1 11 0.00039 27.4 -0.5 20 33-54 19-38 (89)
326 1kvi_A Copper-transporting ATP 26.0 1.4E+02 0.0047 19.3 7.0 55 10-64 9-69 (79)
327 3e6i_A CYPIIE1, P450-J, cytoch 25.0 86 0.0029 28.6 5.3 50 13-63 19-71 (476)
328 2crl_A Copper chaperone for su 24.6 1.9E+02 0.0064 20.4 7.9 53 11-64 21-76 (98)
329 3cam_A Cold-shock domain famil 24.5 33 0.0011 23.3 1.7 20 34-53 3-22 (67)
330 1fvq_A Copper-transporting ATP 24.3 1.3E+02 0.0046 18.7 5.7 54 11-64 4-62 (72)
331 1c9o_A CSPB, cold-shock protei 24.3 34 0.0012 23.1 1.7 21 34-54 3-23 (66)
332 2ew9_A Copper-transporting ATP 24.3 1.6E+02 0.0055 21.8 6.0 52 12-63 83-140 (149)
333 3i4p_A Transcriptional regulat 24.2 2.5E+02 0.0086 21.8 7.7 47 17-63 70-122 (162)
334 1i4w_A Mitochondrial replicati 24.2 64 0.0022 29.4 4.1 23 11-33 143-165 (353)
335 1mwy_A ZNTA; open-faced beta-s 24.1 1.4E+02 0.0049 18.9 8.0 54 11-64 5-62 (73)
336 2lfv_A Protein DAMX; cell divi 29.0 17 0.00059 27.3 0.0 54 10-67 25-87 (106)
337 1h95_A CSD, Y-box binding prot 23.3 29 0.001 24.4 1.2 20 34-53 10-29 (79)
338 3ftd_A Dimethyladenosine trans 23.2 58 0.002 27.9 3.4 29 11-39 96-124 (249)
339 1qyr_A KSGA, high level kasuga 22.9 65 0.0022 27.7 3.7 28 11-38 91-118 (252)
340 2zbc_A 83AA long hypothetical 22.7 1.8E+02 0.0061 19.5 6.4 40 23-62 14-57 (83)
341 1opz_A Potential copper-transp 22.1 1.5E+02 0.0053 18.5 7.6 54 11-64 8-67 (76)
342 2yko_A LINE-1 ORF1P; RNA-bindi 21.9 1.2E+02 0.0041 26.0 5.0 69 10-78 52-148 (233)
343 2e7g_A Putative ribosome-bindi 21.9 91 0.0031 24.0 4.0 31 34-64 43-78 (129)
344 2nn4_A Hypothetical protein YQ 21.5 32 0.0011 24.0 1.1 18 23-40 4-21 (72)
345 4dqz_A Methyltransferase type 21.3 53 0.0018 27.9 2.6 53 11-63 118-181 (230)
346 1q1o_A Cell division control p 21.3 2.2E+02 0.0075 20.9 5.8 50 15-64 26-85 (98)
347 2qif_A Copper chaperone COPZ; 21.2 1.5E+02 0.005 17.9 6.8 54 11-64 4-63 (69)
348 2cvi_A 75AA long hypothetical 21.2 2E+02 0.0069 19.5 6.9 40 23-62 14-57 (83)
349 3tqs_A Ribosomal RNA small sub 21.1 35 0.0012 29.5 1.6 29 12-40 98-126 (255)
350 2l69_A Rossmann 2X3 fold prote 20.9 1.3E+02 0.0045 22.0 4.3 33 46-80 53-85 (134)
351 1pqs_A Cell division control p 20.9 1.1E+02 0.0037 21.5 3.8 50 15-64 5-64 (77)
352 3l3e_A DNA topoisomerase 2-bin 20.5 64 0.0022 23.5 2.8 43 8-51 16-58 (107)
353 2ij2_A Cytochrome P450 BM3; mo 20.5 1E+02 0.0036 28.3 4.9 47 14-61 13-62 (470)
354 3tbg_A Cytochrome P450 2D6; mo 20.2 1.2E+02 0.0042 27.5 5.3 56 14-71 20-78 (479)
355 2lea_A Serine/arginine-rich sp 20.1 22 0.00075 27.4 0.0 27 46-72 6-32 (135)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.82 E-value=2.3e-19 Score=173.63 Aligned_cols=77 Identities=31% Similarity=0.584 Sum_probs=71.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
...++|||+||++.||+++|++||.+||+|+.|.|+ ++||||+|.+.++|++||+.|||++|+|+.|.|+|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345899999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred cCCCC
Q 021599 80 RGGPR 84 (310)
Q Consensus 80 k~~~~ 84 (310)
++...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87544
No 2
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=2.4e-19 Score=139.27 Aligned_cols=80 Identities=29% Similarity=0.492 Sum_probs=74.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCCCC
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRG 85 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~~~ 85 (310)
.....++|||+|||+.+++++|+++|.+||+|..|.|+++||||+|.+.++|++||+.||+..|+|+.|.|+++++....
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999876543
No 3
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=133.95 Aligned_cols=80 Identities=24% Similarity=0.547 Sum_probs=75.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCCCC
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRG 85 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~~~ 85 (310)
+..+.++|||+|||..+++++|+++|.+||+|..|.|+++||||+|.+.++|+.||+.|||..|+|+.|.|+++++....
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999876554
No 4
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.80 E-value=1.7e-19 Score=143.27 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=65.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
...++|||+|||+.+++++|+++|.+||+|+.|.|+. +||||+|.+.++|++||+.|||++|+|+.|+|.+.+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3578999999999999999999999999999999988 799999999999999999999999999995554443
No 5
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.2e-19 Score=134.92 Aligned_cols=80 Identities=26% Similarity=0.502 Sum_probs=75.4
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCCCC
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRG 85 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~~~ 85 (310)
.....++|||+|||+.+++++|+++|.+||.|..|.|+++||||+|.+.++|+.||+.|||..|+|+.|.|+++++....
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999876554
No 6
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=134.67 Aligned_cols=80 Identities=33% Similarity=0.606 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCCC
Q 021599 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 84 (310)
Q Consensus 5 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~~ 84 (310)
+.....++|||+|||+.+++++|+++|.+||.|..|.|+++||||+|.+.++|+.||+.|||..|+|+.|.|+++++...
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999987644
No 7
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.9e-19 Score=137.11 Aligned_cols=84 Identities=27% Similarity=0.495 Sum_probs=73.2
Q ss_pred CCCCCCCCCcEEEEccCCC-CCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 2 PRYDDRYGGTRLYVGRLAS-RTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 2 ~~~~~~~~~~~l~V~nL~~-~~te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
-...+..+.++|||+|||+ .+++++|+++|.+||.|..|.|.++||||+|.+.++|+.||+.|||..|.|+.|.|++++
T Consensus 2 ~~~~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 2 TEMHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -------CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CccccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 3445667899999999998 999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 021599 81 GGPRG 85 (310)
Q Consensus 81 ~~~~~ 85 (310)
.....
T Consensus 82 ~~~~~ 86 (96)
T 2kvi_A 82 SNARP 86 (96)
T ss_dssp CCCC-
T ss_pred cCCCC
Confidence 76543
No 8
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=138.24 Aligned_cols=74 Identities=30% Similarity=0.554 Sum_probs=69.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
..+++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4679999999999999999999999999999999864 39999999999999999999999999999999999
Q ss_pred cC
Q 021599 80 RG 81 (310)
Q Consensus 80 k~ 81 (310)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 9
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=137.04 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=73.6
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-CeEEEEECCHHHHHHHHHhcCCcccCC-----Cceeeeecc
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-DFAFVEFSDPRDADDARYSLNGRDVDG-----SRIIVEFAR 80 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-~~afV~F~~~eda~~Ai~~lng~~l~G-----r~I~V~~ak 80 (310)
....++|||+|||+.+++++|+++|.+||+|+.|.|+. +||||+|.+.++|++||+.|||++|+| +.|.|++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 35679999999999999999999999999999999988 799999999999999999999999999 999999999
Q ss_pred CCCCC
Q 021599 81 GGPRG 85 (310)
Q Consensus 81 ~~~~~ 85 (310)
+....
T Consensus 92 ~~~~~ 96 (108)
T 1x4c_A 92 PRSPS 96 (108)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76543
No 10
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=133.08 Aligned_cols=81 Identities=36% Similarity=0.478 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhc--CCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCC
Q 021599 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRY--GRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (310)
Q Consensus 5 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~--G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~ 82 (310)
+.....++|||+|||+.+++++|+++|.+| |.|..|.+.++||||+|.+.++|+.||..|||..|+|+.|.|+++++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 344567899999999999999999999999 999999999999999999999999999999999999999999999876
Q ss_pred CCC
Q 021599 83 PRG 85 (310)
Q Consensus 83 ~~~ 85 (310)
...
T Consensus 90 ~~~ 92 (99)
T 2cpd_A 90 DKD 92 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 11
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.2e-18 Score=139.95 Aligned_cols=80 Identities=24% Similarity=0.466 Sum_probs=73.0
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
....+++|||+||++.+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999986 4599999999999999999999999999999999
Q ss_pred eccCCCCC
Q 021599 78 FARGGPRG 85 (310)
Q Consensus 78 ~ak~~~~~ 85 (310)
++++....
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99866443
No 12
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=132.13 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=72.9
Q ss_pred CCCCcEEEEccCCCCCcHHHHH----HHHHhcCCeeEEEEe-----CCeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLE----EIFSRYGRIRDVDMK-----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~----~~F~~~G~V~~v~i~-----~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
..++++|||+|||+.+++++|+ ++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567999999999999999999 999999999999998 6799999999999999999999999999999999
Q ss_pred eccCCCC
Q 021599 78 FARGGPR 84 (310)
Q Consensus 78 ~ak~~~~ 84 (310)
++++.+.
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9986543
No 13
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=133.96 Aligned_cols=80 Identities=50% Similarity=0.906 Sum_probs=73.5
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-----CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-----~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
+....++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.||+..|+|+.|.|++++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 455679999999999999999999999999999999864 599999999999999999999999999999999998
Q ss_pred CCCCC
Q 021599 81 GGPRG 85 (310)
Q Consensus 81 ~~~~~ 85 (310)
+....
T Consensus 98 ~~~~~ 102 (109)
T 1x4a_A 98 SGRGT 102 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 76543
No 14
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=2.6e-18 Score=132.30 Aligned_cols=77 Identities=29% Similarity=0.521 Sum_probs=72.6
Q ss_pred CCCCCcEEEEccCCC-CCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCC
Q 021599 6 DRYGGTRLYVGRLAS-RTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~-~~te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~ 82 (310)
....+++|||+||++ .+++++|+++|.+||.|..|.|.++||||+|.+.++|+.||+.|||..|+|+.|.|++++..
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 445789999999998 99999999999999999999999999999999999999999999999999999999999864
No 15
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=3.6e-18 Score=134.10 Aligned_cols=78 Identities=29% Similarity=0.583 Sum_probs=72.8
Q ss_pred CCCCCcEEEEccCCCC-CcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCC
Q 021599 6 DRYGGTRLYVGRLASR-TRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~-~te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~ 83 (310)
....+++|||+||++. +++++|+++|.+||+|..|.|.++||||+|.+.++|+.||+.|||..|+|+.|.|++++...
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 3445689999999999 99999999999999999999999999999999999999999999999999999999998543
No 16
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=6.9e-18 Score=134.15 Aligned_cols=80 Identities=30% Similarity=0.538 Sum_probs=73.9
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
+....++|||+||+..+++++|+++|.+||.|+.|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999999975 6999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 021599 79 ARGGPRG 85 (310)
Q Consensus 79 ak~~~~~ 85 (310)
++.....
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9876543
No 17
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=131.47 Aligned_cols=82 Identities=24% Similarity=0.494 Sum_probs=74.9
Q ss_pred CCCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCcee
Q 021599 3 RYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (310)
Q Consensus 3 ~~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~ 75 (310)
........++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.
T Consensus 10 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 10 RYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 445566789999999999999999999999999999999864 5999999999999999999999999999999
Q ss_pred eeeccCCCC
Q 021599 76 VEFARGGPR 84 (310)
Q Consensus 76 V~~ak~~~~ 84 (310)
|+++++.+.
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999987643
No 18
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6.8e-18 Score=128.68 Aligned_cols=78 Identities=29% Similarity=0.491 Sum_probs=72.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
...++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4678999999999999999999999999999999964 49999999999999999999999999999999999
Q ss_pred cCCCCC
Q 021599 80 RGGPRG 85 (310)
Q Consensus 80 k~~~~~ 85 (310)
++....
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876554
No 19
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=3.3e-18 Score=142.61 Aligned_cols=78 Identities=32% Similarity=0.503 Sum_probs=72.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
...++|||+|||..+++++|+++|.+||+|+.|.|+. +||||+|.+.++|++||+.||++.|+|+.|.|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4679999999999999999999999999999999953 49999999999999999999999999999999999
Q ss_pred cCCCCC
Q 021599 80 RGGPRG 85 (310)
Q Consensus 80 k~~~~~ 85 (310)
++....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 876543
No 20
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.6e-18 Score=130.88 Aligned_cols=81 Identities=35% Similarity=0.569 Sum_probs=74.5
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 5 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
......++|||+|||+.+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999997 56999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 021599 79 ARGGPRG 85 (310)
Q Consensus 79 ak~~~~~ 85 (310)
+++....
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 21
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=133.96 Aligned_cols=81 Identities=12% Similarity=0.208 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcC--CcccCCCceeeeecc
Q 021599 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLN--GRDVDGSRIIVEFAR 80 (310)
Q Consensus 5 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--~~afV~F~~~eda~~Ai~~ln--g~~l~Gr~I~V~~ak 80 (310)
......++|||+|||+.+++++|+++|.+||+|+.|.|++ +||||+|++.++|+.||+.|+ +.+|+|+.|.|++++
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 3556789999999999999999999999999999999985 699999999999999999886 478999999999998
Q ss_pred CCCCC
Q 021599 81 GGPRG 85 (310)
Q Consensus 81 ~~~~~ 85 (310)
.+...
T Consensus 91 ~~~~~ 95 (105)
T 1sjq_A 91 HKELK 95 (105)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76543
No 22
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=6.7e-18 Score=137.87 Aligned_cols=80 Identities=28% Similarity=0.447 Sum_probs=73.0
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
+....++|||+||+..+++++|+++|..||+|+.|.|+ ++||||+|.+.++|++||+.|||..|+|+.|.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34557899999999999999999999999999999986 3499999999999999999999999999999999
Q ss_pred eccCCCCC
Q 021599 78 FARGGPRG 85 (310)
Q Consensus 78 ~ak~~~~~ 85 (310)
+++.....
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876554
No 23
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.4e-18 Score=129.60 Aligned_cols=81 Identities=32% Similarity=0.590 Sum_probs=74.1
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCCcccC--CCceeeeec
Q 021599 4 YDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGRDVD--GSRIIVEFA 79 (310)
Q Consensus 4 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--~~afV~F~~~eda~~Ai~~lng~~l~--Gr~I~V~~a 79 (310)
+......++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+ |+.|.|+++
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 34556779999999999999999999999999999999985 49999999999999999999999999 999999999
Q ss_pred cCCCC
Q 021599 80 RGGPR 84 (310)
Q Consensus 80 k~~~~ 84 (310)
++.+.
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 24
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=129.74 Aligned_cols=80 Identities=30% Similarity=0.479 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 5 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
.+....++|||+|||+.+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999999999999999999999999999975 5999999999999999999999999999999999
Q ss_pred ccCCCC
Q 021599 79 ARGGPR 84 (310)
Q Consensus 79 ak~~~~ 84 (310)
+++...
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987543
No 25
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=2.4e-18 Score=136.04 Aligned_cols=75 Identities=19% Similarity=0.145 Sum_probs=70.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcC-CeeEEEEe----CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCC
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYG-RIRDVDMK----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G-~V~~v~i~----~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~ 82 (310)
...++|||+|||+.+++++|+++|.+|| +|..+.|. ++||||+|.+.++|++||+.|||.+|+|+.|.|++++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4568999999999999999999999999 99999996 579999999999999999999999999999999999754
No 26
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=3e-18 Score=134.60 Aligned_cols=79 Identities=25% Similarity=0.507 Sum_probs=73.5
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCCC
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 84 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~~ 84 (310)
.....++|||+||+..+++++|+++|.+||+|..|.|+++||||+|.+.++|+.||+.|||..|+|+.|.|+++++.+.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 4456899999999999999999999999999999999999999999999999999999999999999999999987543
No 27
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=131.94 Aligned_cols=79 Identities=25% Similarity=0.395 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 5 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
......++|||+|||+.+++++|+++|.+||+|+.|.|+. +||||+|.+.++|++||+.|++ +|+|+.|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3456789999999999999999999999999999999964 3999999999999999999998 899999999
Q ss_pred eeccCCCC
Q 021599 77 EFARGGPR 84 (310)
Q Consensus 77 ~~ak~~~~ 84 (310)
+++.....
T Consensus 91 ~~a~~~~~ 98 (116)
T 2cqd_A 91 NLAYLGAK 98 (116)
T ss_dssp EESTTTCC
T ss_pred EEcccCCC
Confidence 99976533
No 28
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=131.18 Aligned_cols=80 Identities=31% Similarity=0.495 Sum_probs=73.8
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
+....++|||+|||+.+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|+++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45678999999999999999999999999999999997 359999999999999999999999999999999999
Q ss_pred cCCCCC
Q 021599 80 RGGPRG 85 (310)
Q Consensus 80 k~~~~~ 85 (310)
++....
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 876543
No 29
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=132.38 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=69.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCCcc--cCCCceeeeeccCC
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRD--VDGSRIIVEFARGG 82 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~~eda~~Ai~~lng~~--l~Gr~I~V~~ak~~ 82 (310)
.++.+|||+|||+.+++++|+++|.+||+|+.|.|+ ++||||+|++.++|..||+.|++.. |.|+.|.|+|++.+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 468899999999999999999999999999999997 5799999999999999999999875 78999999999854
No 30
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=129.24 Aligned_cols=81 Identities=27% Similarity=0.384 Sum_probs=74.3
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 5 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
.+....++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3556789999999999999999999999999999999864 49999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 021599 77 EFARGGPRG 85 (310)
Q Consensus 77 ~~ak~~~~~ 85 (310)
+++++....
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876543
No 31
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.8e-18 Score=131.18 Aligned_cols=81 Identities=27% Similarity=0.435 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 5 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
.+....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||+.|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3566789999999999999999999999999999999864 39999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 021599 77 EFARGGPRG 85 (310)
Q Consensus 77 ~~ak~~~~~ 85 (310)
+++++....
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999876543
No 32
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=8.8e-18 Score=127.29 Aligned_cols=79 Identities=24% Similarity=0.379 Sum_probs=72.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
.....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|+++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346789999999999999999999999999999999864 59999999999999999999999999999999999
Q ss_pred cCCCC
Q 021599 80 RGGPR 84 (310)
Q Consensus 80 k~~~~ 84 (310)
++...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 86543
No 33
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=2.3e-17 Score=130.34 Aligned_cols=79 Identities=27% Similarity=0.532 Sum_probs=73.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
+....++|||+||++.+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|||+.|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 456789999999999999999999999999999999864 399999999999999999999999999999999
Q ss_pred eccCCCC
Q 021599 78 FARGGPR 84 (310)
Q Consensus 78 ~ak~~~~ 84 (310)
+++....
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9987654
No 34
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=128.75 Aligned_cols=80 Identities=36% Similarity=0.614 Sum_probs=73.4
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
.....++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345789999999999999999999999999999999964 499999999999999999999999999999999
Q ss_pred eccCCCCC
Q 021599 78 FARGGPRG 85 (310)
Q Consensus 78 ~ak~~~~~ 85 (310)
++++....
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 35
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=1.2e-17 Score=129.65 Aligned_cols=78 Identities=28% Similarity=0.462 Sum_probs=72.1
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCC---Cceee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDG---SRIIV 76 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~G---r~I~V 76 (310)
....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|.| +.|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 35689999999999999999999999999999999974 599999999999999999999999998 99999
Q ss_pred eeccCCCC
Q 021599 77 EFARGGPR 84 (310)
Q Consensus 77 ~~ak~~~~ 84 (310)
++++....
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987654
No 36
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=127.26 Aligned_cols=79 Identities=29% Similarity=0.437 Sum_probs=73.0
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
+....++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 346789999999999999999999999999999999853 599999999999999999999999999999999
Q ss_pred eccCCCC
Q 021599 78 FARGGPR 84 (310)
Q Consensus 78 ~ak~~~~ 84 (310)
++++...
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987654
No 37
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=7.7e-18 Score=126.17 Aligned_cols=76 Identities=24% Similarity=0.453 Sum_probs=68.1
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
..+.++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35678999999999999999999999999999999864 3999999999999999999999999999999999
Q ss_pred ccCC
Q 021599 79 ARGG 82 (310)
Q Consensus 79 ak~~ 82 (310)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9865
No 38
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=7.5e-18 Score=125.10 Aligned_cols=74 Identities=24% Similarity=0.444 Sum_probs=69.1
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
+++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 4789999999999999999999999999999986 34999999999999999999999999999999999986
Q ss_pred CC
Q 021599 82 GP 83 (310)
Q Consensus 82 ~~ 83 (310)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=7e-18 Score=133.80 Aligned_cols=75 Identities=20% Similarity=0.399 Sum_probs=69.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCC
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~ 82 (310)
..++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||+.|+|+.|.|++++..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 467899999999999999999999999999999863 59999999999999999999999999999999999865
Q ss_pred C
Q 021599 83 P 83 (310)
Q Consensus 83 ~ 83 (310)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 40
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.7e-18 Score=132.30 Aligned_cols=77 Identities=16% Similarity=0.137 Sum_probs=70.4
Q ss_pred CCCCcEEEEccCCC-CCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCCc--ccCCCceeeeeccC
Q 021599 7 RYGGTRLYVGRLAS-RTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGR--DVDGSRIIVEFARG 81 (310)
Q Consensus 7 ~~~~~~l~V~nL~~-~~te~dL~~~F~~~G~V~~v~i~~--~~afV~F~~~eda~~Ai~~lng~--~l~Gr~I~V~~ak~ 81 (310)
..++++|||+|||+ .+++++|+++|.+||+|+.|.|++ +||||+|++.++|+.||+.||+. .|+|+.|.|++++.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 45689999999999 999999999999999999999986 69999999999999999998865 59999999999985
Q ss_pred CC
Q 021599 82 GP 83 (310)
Q Consensus 82 ~~ 83 (310)
..
T Consensus 92 ~~ 93 (102)
T 1x4d_A 92 YK 93 (102)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 41
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=128.21 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=69.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe----CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~----~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
+....++|||+|||+.+++++|+++|.+||.|. +.++ ++||||+|.+.++|+.||+.|||..|+|+.|.|+++++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 345579999999999999999999999999996 5554 57999999999999999999999999999999999986
Q ss_pred CC
Q 021599 82 GP 83 (310)
Q Consensus 82 ~~ 83 (310)
..
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 42
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=127.84 Aligned_cols=79 Identities=23% Similarity=0.466 Sum_probs=73.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCC
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~ 83 (310)
.....++|||+|||+.+++++|+++|.+||+|..|.|++ +||||+|.+.++|+.||+.|||..|+|+.|.|+++++..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 345678999999999999999999999999999999986 699999999999999999999999999999999998764
Q ss_pred C
Q 021599 84 R 84 (310)
Q Consensus 84 ~ 84 (310)
.
T Consensus 91 ~ 91 (99)
T 2cpj_A 91 S 91 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 43
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=129.98 Aligned_cols=77 Identities=25% Similarity=0.497 Sum_probs=70.9
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
...+++|||+||+..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3457899999999999999999999999999999986 35999999999999999999999999999999999
Q ss_pred ccCCC
Q 021599 79 ARGGP 83 (310)
Q Consensus 79 ak~~~ 83 (310)
+++.+
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98653
No 44
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=9e-18 Score=126.29 Aligned_cols=73 Identities=16% Similarity=0.313 Sum_probs=69.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
....-|||+||++.+++++|+++|.+||+|..+.|. +|||||+|.+.++|++||+.||+..|.|+.|.|++|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467889999999999999999999999999999885 6899999999999999999999999999999999985
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.3e-17 Score=124.40 Aligned_cols=74 Identities=35% Similarity=0.524 Sum_probs=69.3
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
..+.++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4578999999999999999999999999999999884 45999999999999999999999999999999999
Q ss_pred cc
Q 021599 79 AR 80 (310)
Q Consensus 79 ak 80 (310)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 46
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.5e-18 Score=134.06 Aligned_cols=79 Identities=13% Similarity=0.220 Sum_probs=71.8
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCC--cccCCCceeeeeccC
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNG--RDVDGSRIIVEFARG 81 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--~~afV~F~~~eda~~Ai~~lng--~~l~Gr~I~V~~ak~ 81 (310)
...++++|||+|||+.+++++|+++|++||+|+.|.|+. +||||+|++.++|++||+.|++ .+|.|+.|.|++++.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 445689999999999999999999999999999999984 7999999999999999998874 689999999999986
Q ss_pred CCC
Q 021599 82 GPR 84 (310)
Q Consensus 82 ~~~ 84 (310)
+..
T Consensus 107 k~~ 109 (119)
T 2ad9_A 107 KEL 109 (119)
T ss_dssp SSC
T ss_pred CCC
Confidence 644
No 47
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=128.22 Aligned_cols=79 Identities=43% Similarity=0.697 Sum_probs=72.8
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
+..+.++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 446689999999999999999999999999999999863 599999999999999999999999999999999
Q ss_pred eccCCCC
Q 021599 78 FARGGPR 84 (310)
Q Consensus 78 ~ak~~~~ 84 (310)
+++....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9986544
No 48
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=128.24 Aligned_cols=79 Identities=24% Similarity=0.540 Sum_probs=72.9
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC---------CeEEEEECCHHHHHHHHHhc-CCcccCCCcee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---------DFAFVEFSDPRDADDARYSL-NGRDVDGSRII 75 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~---------~~afV~F~~~eda~~Ai~~l-ng~~l~Gr~I~ 75 (310)
+....++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.| |+..|+|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 456789999999999999999999999999999999853 49999999999999999999 99999999999
Q ss_pred eeeccCCCC
Q 021599 76 VEFARGGPR 84 (310)
Q Consensus 76 V~~ak~~~~ 84 (310)
|+++++...
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987644
No 49
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=124.74 Aligned_cols=74 Identities=32% Similarity=0.637 Sum_probs=69.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE---------eCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM---------KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i---------~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
..++|||+|||..+++++|+++|.+||.|..|.| .++||||+|.+.++|+.||+.|||..|+|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999988 4579999999999999999999999999999999999
Q ss_pred cCC
Q 021599 80 RGG 82 (310)
Q Consensus 80 k~~ 82 (310)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 50
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=127.47 Aligned_cols=77 Identities=29% Similarity=0.578 Sum_probs=71.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-----------CeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-----------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
.+.++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999998862 49999999999999999999999999999999
Q ss_pred eeccCCCC
Q 021599 77 EFARGGPR 84 (310)
Q Consensus 77 ~~ak~~~~ 84 (310)
++++....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987644
No 51
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.3e-18 Score=129.69 Aligned_cols=80 Identities=33% Similarity=0.433 Sum_probs=73.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
.....++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34578999999999999999999999999999999985 3599999999999999999999999999999999
Q ss_pred eccCCCCC
Q 021599 78 FARGGPRG 85 (310)
Q Consensus 78 ~ak~~~~~ 85 (310)
++++....
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876544
No 52
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.9e-17 Score=125.55 Aligned_cols=79 Identities=23% Similarity=0.440 Sum_probs=72.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
+....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+ ||+..|+|+.|.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 456789999999999999999999999999999999953 599999999999999998 99999999999999
Q ss_pred eccCCCCC
Q 021599 78 FARGGPRG 85 (310)
Q Consensus 78 ~ak~~~~~ 85 (310)
++++....
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876543
No 53
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=129.16 Aligned_cols=78 Identities=24% Similarity=0.464 Sum_probs=72.8
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCCC
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 84 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~~ 84 (310)
....++|||+||+..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||..|||..|+|+.|.|.|+++.+.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 45678999999999999999999999999999999984 7999999999999999999999999999999999987654
No 54
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=131.37 Aligned_cols=75 Identities=21% Similarity=0.312 Sum_probs=69.9
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
..+..+|||+||++.+++++|+++|.+||+|+.|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999863 4999999999999999999999999999999999
Q ss_pred ccC
Q 021599 79 ARG 81 (310)
Q Consensus 79 ak~ 81 (310)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 864
No 55
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=127.23 Aligned_cols=78 Identities=24% Similarity=0.430 Sum_probs=71.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEE-EEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV-DMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v-~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
.++++|||+|||..+++++|+++|.+||.|..| .|+. +||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 568999999999999999999999999999988 8754 4999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 021599 79 ARGGPRG 85 (310)
Q Consensus 79 ak~~~~~ 85 (310)
+.+....
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 56
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=128.73 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCCc--ccCCCceeeeecc
Q 021599 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGR--DVDGSRIIVEFAR 80 (310)
Q Consensus 5 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--~~afV~F~~~eda~~Ai~~lng~--~l~Gr~I~V~~ak 80 (310)
....++.+|||+|||+.+++++|+++|.+||+|..|.|++ +||||+|.+.++|+.||+.|++. .|+|+.|.|+|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 3456789999999999999999999999999999999874 69999999999999999988764 5999999999998
Q ss_pred CCCC
Q 021599 81 GGPR 84 (310)
Q Consensus 81 ~~~~ 84 (310)
.+..
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 6544
No 57
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=123.48 Aligned_cols=75 Identities=31% Similarity=0.491 Sum_probs=70.4
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhc-CCcccCCCceeeeecc
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFAR 80 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--~~afV~F~~~eda~~Ai~~l-ng~~l~Gr~I~V~~ak 80 (310)
+....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.| +|..|+|+.|.|+|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456789999999999999999999999999999999976 79999999999999999988 9999999999999975
No 58
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.6e-17 Score=128.19 Aligned_cols=79 Identities=20% Similarity=0.407 Sum_probs=72.8
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcC------CcccCC
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLN------GRDVDG 71 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~ln------g~~l~G 71 (310)
+....++|||+|||+.+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|| +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 44678999999999999999999999999999999986 3599999999999999999999 999999
Q ss_pred CceeeeeccCCCC
Q 021599 72 SRIIVEFARGGPR 84 (310)
Q Consensus 72 r~I~V~~ak~~~~ 84 (310)
+.|.|+++.+...
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987644
No 59
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-17 Score=126.48 Aligned_cols=75 Identities=47% Similarity=0.780 Sum_probs=70.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCCCC
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRG 85 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~---~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~~~ 85 (310)
++|||+|||+.+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|+++++.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 689999999999999999999999999999996 469999999999999999999999999999999999876543
No 60
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=1.9e-17 Score=130.85 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=72.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
+....++|||+|||+.+++++|+++|.+||+|+.|.|+. +||||+|.+.++|+.||+.||+..|+|+.|.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345678999999999999999999999999999998864 399999999999999999999999999999999
Q ss_pred eccCCCCC
Q 021599 78 FARGGPRG 85 (310)
Q Consensus 78 ~ak~~~~~ 85 (310)
++++....
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99876543
No 61
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=4.6e-17 Score=126.62 Aligned_cols=79 Identities=20% Similarity=0.429 Sum_probs=72.5
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCccc---CCCce
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDV---DGSRI 74 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l---~Gr~I 74 (310)
.....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..| .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 456789999999999999999999999999999999964 5999999999999999999999988 89999
Q ss_pred eeeeccCCCC
Q 021599 75 IVEFARGGPR 84 (310)
Q Consensus 75 ~V~~ak~~~~ 84 (310)
.|.++.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987654
No 62
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=1.7e-17 Score=129.33 Aligned_cols=74 Identities=24% Similarity=0.385 Sum_probs=69.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~-------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
....++|||+|||+.+++++|+++|.+||.|+.|.|+ ++||||+|.+.++|++||+.|||..|+|+.|.|+++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3567999999999999999999999999999999987 459999999999999999999999999999999998
Q ss_pred c
Q 021599 80 R 80 (310)
Q Consensus 80 k 80 (310)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 63
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=131.18 Aligned_cols=77 Identities=36% Similarity=0.614 Sum_probs=72.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
+....++|||+||+..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|+++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45678999999999999999999999999999999997 569999999999999999999999999999999999
Q ss_pred cCC
Q 021599 80 RGG 82 (310)
Q Consensus 80 k~~ 82 (310)
+++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 864
No 64
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=127.70 Aligned_cols=78 Identities=23% Similarity=0.358 Sum_probs=71.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---------CCeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~---------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
+....++|||+|||+.+++++|+++|.+|| |+.|.|+ ++||||+|.+.++|++|| .||+..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345679999999999999999999999999 9999986 349999999999999999 99999999999999
Q ss_pred eeccCCCCC
Q 021599 77 EFARGGPRG 85 (310)
Q Consensus 77 ~~ak~~~~~ 85 (310)
+++++....
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 65
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=2.2e-17 Score=126.37 Aligned_cols=75 Identities=19% Similarity=0.400 Sum_probs=70.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
++++|||+||+..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|++++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999986 3599999999999999999999999999999999998
Q ss_pred CCC
Q 021599 81 GGP 83 (310)
Q Consensus 81 ~~~ 83 (310)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 66
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.7e-17 Score=126.98 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=72.5
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 4 YDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 4 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
..+....++|||+||+..+++++|+++|.+||+|+.|.|+. +||||+|.+.++|+.||+.|||+.|+|+.|.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 34556789999999999999999999999999999999864 49999999999999999999999999999999
Q ss_pred eeccCC
Q 021599 77 EFARGG 82 (310)
Q Consensus 77 ~~ak~~ 82 (310)
++++..
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 999754
No 67
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-17 Score=125.68 Aligned_cols=78 Identities=24% Similarity=0.424 Sum_probs=70.2
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCC-eeEEEE-eCCeEEEEECCHHHHHHHHHhcCC-cccCCCceeeeeccCCC
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGR-IRDVDM-KRDFAFVEFSDPRDADDARYSLNG-RDVDGSRIIVEFARGGP 83 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~-V~~v~i-~~~~afV~F~~~eda~~Ai~~lng-~~l~Gr~I~V~~ak~~~ 83 (310)
....++|||+|||+.+++++|+++|.+||. |..+.| .++||||+|.+.++|+.||+.||| ..|+|+.|.|+++++..
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 456789999999999999999999999999 665554 468999999999999999999999 99999999999998764
Q ss_pred C
Q 021599 84 R 84 (310)
Q Consensus 84 ~ 84 (310)
.
T Consensus 85 ~ 85 (93)
T 2cqh_A 85 L 85 (93)
T ss_dssp C
T ss_pred c
Confidence 4
No 68
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=125.16 Aligned_cols=77 Identities=22% Similarity=0.391 Sum_probs=70.9
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCee-EEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCc----
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIR-DVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSR---- 73 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~-~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~---- 73 (310)
....++|||+|||+.+++++|+++|.+||+|. .|.|+. +||||+|.+.++|+.||+.|||..|+|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45689999999999999999999999999999 998863 49999999999999999999999999999
Q ss_pred eeeeeccCCC
Q 021599 74 IIVEFARGGP 83 (310)
Q Consensus 74 I~V~~ak~~~ 83 (310)
|.|+++++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998653
No 69
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=2.6e-17 Score=129.00 Aligned_cols=77 Identities=25% Similarity=0.502 Sum_probs=71.1
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
...+++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||..|||..|+|+.|.|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3457899999999999999999999999999999986 35999999999999999999999999999999999
Q ss_pred ccCCC
Q 021599 79 ARGGP 83 (310)
Q Consensus 79 ak~~~ 83 (310)
+.+.+
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98653
No 70
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=127.63 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=71.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhc--CCcccCCCceeeeeccC
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSL--NGRDVDGSRIIVEFARG 81 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--~~afV~F~~~eda~~Ai~~l--ng~~l~Gr~I~V~~ak~ 81 (310)
...++++|||+|||+.+++++|+++|.+||+|+.|.|+. +||||+|.+.++|+.||+.| ++.+|.|+.|.|+|++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 445679999999999999999999999999999999875 69999999999999999976 46789999999999986
Q ss_pred CCC
Q 021599 82 GPR 84 (310)
Q Consensus 82 ~~~ 84 (310)
+..
T Consensus 91 ~~~ 93 (101)
T 2cq1_A 91 KEL 93 (101)
T ss_dssp SSC
T ss_pred ccC
Confidence 544
No 71
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=124.95 Aligned_cols=76 Identities=39% Similarity=0.517 Sum_probs=70.6
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
+....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 456689999999999999999999999999999999863 499999999999999999999999999999999
Q ss_pred eccC
Q 021599 78 FARG 81 (310)
Q Consensus 78 ~ak~ 81 (310)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9874
No 72
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=127.41 Aligned_cols=76 Identities=22% Similarity=0.370 Sum_probs=68.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcC-CeeEEEEeC--------CeEEEEECCHHHHHHHHHhc-CCcccCCCceeeeec
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYG-RIRDVDMKR--------DFAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFA 79 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G-~V~~v~i~~--------~~afV~F~~~eda~~Ai~~l-ng~~l~Gr~I~V~~a 79 (310)
+++|||+|||..+|+++|+++|.+|| +|..|.|++ +||||+|.+.++|+.||+.| ++..|+|+.|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 899998853 59999999999999999877 567899999999999
Q ss_pred cCCCCC
Q 021599 80 RGGPRG 85 (310)
Q Consensus 80 k~~~~~ 85 (310)
.++++.
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 73
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=129.11 Aligned_cols=80 Identities=26% Similarity=0.431 Sum_probs=72.5
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCee--------EEEEeC--------CeEEEEECCHHHHHHHHHhcCCccc
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIR--------DVDMKR--------DFAFVEFSDPRDADDARYSLNGRDV 69 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~--------~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l 69 (310)
+....++|||+|||+.+++++|+++|.+||.|. .|.|+. +||||+|.+.++|+.||+.|||+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999998 587753 4999999999999999999999999
Q ss_pred CCCceeeeeccCCCCC
Q 021599 70 DGSRIIVEFARGGPRG 85 (310)
Q Consensus 70 ~Gr~I~V~~ak~~~~~ 85 (310)
+|+.|.|+++++....
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999876543
No 74
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=124.13 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=72.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHh-cCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcc-cCCCceee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSR-YGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRD-VDGSRIIV 76 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~-~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~-l~Gr~I~V 76 (310)
+....++|||+||++.+++++|+++|.+ ||.|..|.|+. +||||+|.+.++|+.||+.|||.. |+|+.|.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 5567899999999999999999999999 99999999863 599999999999999999999999 99999999
Q ss_pred eeccCCCC
Q 021599 77 EFARGGPR 84 (310)
Q Consensus 77 ~~ak~~~~ 84 (310)
+++.+...
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99976543
No 75
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=124.94 Aligned_cols=75 Identities=27% Similarity=0.425 Sum_probs=69.8
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
.....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 345678999999999999999999999999999999964 499999999999999999999999999999999
Q ss_pred ecc
Q 021599 78 FAR 80 (310)
Q Consensus 78 ~ak 80 (310)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 76
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.9e-17 Score=126.72 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=70.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
...++|||+||+..+++++|+++|.+||.|..|.|. ++||||+|.+.++|+.||..|||..|+|+.|.|.++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 457899999999999999999999999999999996 57999999999999999999999999999999999875
No 77
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=4.2e-17 Score=132.16 Aligned_cols=78 Identities=40% Similarity=0.548 Sum_probs=72.2
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 5 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
.+..+.++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999999999999999999999999999963 49999999999999999999999999999999
Q ss_pred eeccCC
Q 021599 77 EFARGG 82 (310)
Q Consensus 77 ~~ak~~ 82 (310)
+++++.
T Consensus 121 ~~a~~~ 126 (129)
T 2kxn_B 121 DFSITK 126 (129)
T ss_dssp SCCSSS
T ss_pred EEecCC
Confidence 999865
No 78
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=122.76 Aligned_cols=77 Identities=34% Similarity=0.478 Sum_probs=70.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCC
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~ 83 (310)
.....++|||+|| .+++++|+++|.+||+|..|.|. ++||||+|.+.++|+.||+.|||..|+|+.|.|+++++.+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 4457899999996 89999999999999999999987 5799999999999999999999999999999999998765
Q ss_pred C
Q 021599 84 R 84 (310)
Q Consensus 84 ~ 84 (310)
.
T Consensus 89 ~ 89 (97)
T 1x5p_A 89 M 89 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 79
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=124.50 Aligned_cols=76 Identities=29% Similarity=0.418 Sum_probs=70.4
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
.....++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 345679999999999999999999999999999999964 4999999999999999999999999999999999
Q ss_pred ccC
Q 021599 79 ARG 81 (310)
Q Consensus 79 ak~ 81 (310)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 873
No 80
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=6.4e-17 Score=124.46 Aligned_cols=76 Identities=24% Similarity=0.422 Sum_probs=69.9
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE--------EEEeC--------CeEEEEECCHHHHHHHHHhcCCcc
Q 021599 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD--------VDMKR--------DFAFVEFSDPRDADDARYSLNGRD 68 (310)
Q Consensus 5 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~--------v~i~~--------~~afV~F~~~eda~~Ai~~lng~~ 68 (310)
......++|||+||+..+++++|+++|.+||.|.. |.|+. +||||+|.+.++|+.||+.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999998 88753 499999999999999999999999
Q ss_pred cCCCceeeeecc
Q 021599 69 VDGSRIIVEFAR 80 (310)
Q Consensus 69 l~Gr~I~V~~ak 80 (310)
|+|+.|.|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 81
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=2.3e-17 Score=130.92 Aligned_cols=75 Identities=25% Similarity=0.458 Sum_probs=69.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
+....++|||+||++.+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999996 3599999999999999999999999999999999
Q ss_pred ecc
Q 021599 78 FAR 80 (310)
Q Consensus 78 ~ak 80 (310)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 82
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=5.5e-17 Score=124.06 Aligned_cols=78 Identities=26% Similarity=0.477 Sum_probs=71.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHH----HHHHhcCCeeEEEEe-----CCeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLE----EIFSRYGRIRDVDMK-----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~----~~F~~~G~V~~v~i~-----~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
+..++++|||+|||..+++++|+ ++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 45678999999999999999999 999999999999986 579999999999999999999999999999999
Q ss_pred eeccCCC
Q 021599 77 EFARGGP 83 (310)
Q Consensus 77 ~~ak~~~ 83 (310)
+++++..
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998653
No 83
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=8.5e-17 Score=125.39 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=70.0
Q ss_pred CCCCcEEEEccCCCCC------cHHHHHHHHHhcCCeeEEEEe------CCeEEEEECCHHHHHHHHHhcCCcccCCC-c
Q 021599 7 RYGGTRLYVGRLASRT------RSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPRDADDARYSLNGRDVDGS-R 73 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~------te~dL~~~F~~~G~V~~v~i~------~~~afV~F~~~eda~~Ai~~lng~~l~Gr-~ 73 (310)
....++|||+|||+.+ ++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||..|||..|+|+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3457899999999999 889999999999999999987 47999999999999999999999999998 9
Q ss_pred eeeeeccCC
Q 021599 74 IIVEFARGG 82 (310)
Q Consensus 74 I~V~~ak~~ 82 (310)
|.|+++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998754
No 84
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.3e-17 Score=126.70 Aligned_cols=81 Identities=26% Similarity=0.409 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCe----eEEEEe----CCeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI----RDVDMK----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 5 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V----~~v~i~----~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
......++|||+|||+.+++++|+++|.+||.| ..+.+. ++||||+|.+.++|+.||+.|||..|+|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344567999999999999999999999999998 566654 469999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 021599 77 EFARGGPRG 85 (310)
Q Consensus 77 ~~ak~~~~~ 85 (310)
+++++....
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpx_A 100 EFGKNKKQR 108 (115)
T ss_dssp EECCCCSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 85
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.69 E-value=8.8e-17 Score=126.11 Aligned_cols=77 Identities=31% Similarity=0.496 Sum_probs=71.4
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
...+.++|||+||+..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 445679999999999999999999999999999999863 499999999999999999999999999999999
Q ss_pred eccCC
Q 021599 78 FARGG 82 (310)
Q Consensus 78 ~ak~~ 82 (310)
+++++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 99864
No 86
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.9e-17 Score=127.72 Aligned_cols=74 Identities=27% Similarity=0.346 Sum_probs=69.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCC
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~ 82 (310)
..++|||+|||+.+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|+|+...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 46899999999999999999999999999999986 469999999999999999999999999999999999753
No 87
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.8e-17 Score=126.10 Aligned_cols=80 Identities=24% Similarity=0.329 Sum_probs=69.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE----eCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM----KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i----~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
.....++|||+|||+.+++++|+++|.+||.|.-+.. .++||||+|.+.++|++||+.|||..|+|+.|.|+++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 3456899999999999999999999999998843322 246999999999999999999999999999999999987
Q ss_pred CCCC
Q 021599 82 GPRG 85 (310)
Q Consensus 82 ~~~~ 85 (310)
....
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 88
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.5e-17 Score=125.74 Aligned_cols=78 Identities=28% Similarity=0.423 Sum_probs=70.9
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCC-eeEEEEe---------CCeEEEEECCHHHHHHHHHhcC--CcccCCCce
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGR-IRDVDMK---------RDFAFVEFSDPRDADDARYSLN--GRDVDGSRI 74 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~-V~~v~i~---------~~~afV~F~~~eda~~Ai~~ln--g~~l~Gr~I 74 (310)
..+.++|||+|||+.+++++|+++|.+||. |..|.|+ ++||||+|.+.++|+.||+.|| +..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 356799999999999999999999999998 9999987 3599999999999999999996 589999999
Q ss_pred eeeeccCCCC
Q 021599 75 IVEFARGGPR 84 (310)
Q Consensus 75 ~V~~ak~~~~ 84 (310)
.|+++++...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986543
No 89
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=2.2e-17 Score=125.02 Aligned_cols=74 Identities=23% Similarity=0.322 Sum_probs=63.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcC--CeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYG--RIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G--~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
.+|||+||++.+++++|+++|.+|| +|..|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999998864 399999999999999999999999999999999998
Q ss_pred CCCC
Q 021599 81 GGPR 84 (310)
Q Consensus 81 ~~~~ 84 (310)
+.+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 90
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.9e-17 Score=125.83 Aligned_cols=76 Identities=16% Similarity=0.333 Sum_probs=69.6
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 4 YDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 4 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
+.......+|||+|||+.+++++|+++|.+||+|..|.|+. |||||+|.+.++|+.||. |+|+.|+|+.|.|
T Consensus 5 ~~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V 83 (103)
T 1s79_A 5 LKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLI 83 (103)
T ss_dssp CSSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEE
T ss_pred ccccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEE
Confidence 33455678999999999999999999999999999999964 699999999999999997 9999999999999
Q ss_pred eecc
Q 021599 77 EFAR 80 (310)
Q Consensus 77 ~~ak 80 (310)
.++.
T Consensus 84 ~~~~ 87 (103)
T 1s79_A 84 LFKD 87 (103)
T ss_dssp EEHH
T ss_pred EEch
Confidence 9875
No 91
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=128.73 Aligned_cols=77 Identities=14% Similarity=0.277 Sum_probs=69.9
Q ss_pred CCCCCcEEEEccCCCCCcHHHHH----HHHHhcCCeeEEEEe-----CCeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLE----EIFSRYGRIRDVDMK-----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~----~~F~~~G~V~~v~i~-----~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
+..++++|||+||++.+++++|+ ++|.+||+|..|.|. +|||||+|.+.++|+.||..|||..|.|+.|.|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34567899999999999999876 699999999999885 369999999999999999999999999999999
Q ss_pred eeccCC
Q 021599 77 EFARGG 82 (310)
Q Consensus 77 ~~ak~~ 82 (310)
+|++..
T Consensus 105 ~~a~~~ 110 (127)
T 2a3j_A 105 TFSETP 110 (127)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 999864
No 92
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.7e-17 Score=124.93 Aligned_cols=79 Identities=27% Similarity=0.363 Sum_probs=72.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
+....++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+. |++.|+|+.|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 456789999999999999999999999999999999865 3999999999999999988 9999999999999
Q ss_pred eccCCCCC
Q 021599 78 FARGGPRG 85 (310)
Q Consensus 78 ~ak~~~~~ 85 (310)
++++....
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99876543
No 93
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.4e-16 Score=123.47 Aligned_cols=78 Identities=27% Similarity=0.444 Sum_probs=70.6
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
.....++|||+|||+.+++++|+++|.+|| |..|.|+. +||||+|.+.++|+.|| .|||..|+|+.|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345679999999999999999999999997 99999863 49999999999999999 999999999999999
Q ss_pred eccCCCCC
Q 021599 78 FARGGPRG 85 (310)
Q Consensus 78 ~ak~~~~~ 85 (310)
++.+....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876543
No 94
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.5e-17 Score=125.25 Aligned_cols=76 Identities=25% Similarity=0.455 Sum_probs=70.3
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
...++|||+|||..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 346899999999999999999999999999999886 359999999999999999999999999999999999
Q ss_pred cCCC
Q 021599 80 RGGP 83 (310)
Q Consensus 80 k~~~ 83 (310)
.+..
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8653
No 95
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.6e-17 Score=128.78 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=71.3
Q ss_pred CCCcEEEEccCCCCCcHHHHH---HHHHhcCCeeEEEEeC-----------CeEEEEECCHHHHHHHHHhcCCcccCCCc
Q 021599 8 YGGTRLYVGRLASRTRSRDLE---EIFSRYGRIRDVDMKR-----------DFAFVEFSDPRDADDARYSLNGRDVDGSR 73 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~---~~F~~~G~V~~v~i~~-----------~~afV~F~~~eda~~Ai~~lng~~l~Gr~ 73 (310)
...++|||+|||+.+++++|+ ++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||+.|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 457899999999999999999 9999999999999863 49999999999999999999999999999
Q ss_pred eeeeeccCCCC
Q 021599 74 IIVEFARGGPR 84 (310)
Q Consensus 74 I~V~~ak~~~~ 84 (310)
|.|+++++++.
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999997653
No 96
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.6e-17 Score=125.44 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=68.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
.....++|||+|||+.+++++|+++|.+||.|..+.++ ++||||+|.+.++|+.||+.|||..|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999998755443 3599999999999999999999999999999999
Q ss_pred eccCC
Q 021599 78 FARGG 82 (310)
Q Consensus 78 ~ak~~ 82 (310)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 97
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=4e-17 Score=126.23 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=69.8
Q ss_pred CCCCcEEEEccCCC------CCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCC-
Q 021599 7 RYGGTRLYVGRLAS------RTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDG- 71 (310)
Q Consensus 7 ~~~~~~l~V~nL~~------~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~G- 71 (310)
...+++|||+|||. .+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 45578999999999 99999999999999999999985 4699999999999999999999999999
Q ss_pred CceeeeeccC
Q 021599 72 SRIIVEFARG 81 (310)
Q Consensus 72 r~I~V~~ak~ 81 (310)
+.|.|.++.+
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999999874
No 98
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=8.7e-17 Score=135.40 Aligned_cols=77 Identities=25% Similarity=0.478 Sum_probs=70.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
..+++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||..|||+.|+|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4568999999999999999999999999999999863 59999999999999999999999999999999999
Q ss_pred cCCCC
Q 021599 80 RGGPR 84 (310)
Q Consensus 80 k~~~~ 84 (310)
.....
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 86543
No 99
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6.4e-17 Score=124.92 Aligned_cols=80 Identities=26% Similarity=0.482 Sum_probs=69.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-----CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-----RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~-----~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
.....++|||+||++.+++++|+++|..|+.|..+... ++||||+|.+.++|+.||+.|||+.|+|+.|.|++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 44678999999999999999999999988755544432 3599999999999999999999999999999999999
Q ss_pred CCCCC
Q 021599 81 GGPRG 85 (310)
Q Consensus 81 ~~~~~ 85 (310)
+....
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76543
No 100
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=118.80 Aligned_cols=67 Identities=22% Similarity=0.413 Sum_probs=62.9
Q ss_pred CcEEEEccCCCCC------cHHHHHHHHHhcCCeeEEEEe------CCeEEEEECCHHHHHHHHHhcCCcccCCC-ceee
Q 021599 10 GTRLYVGRLASRT------RSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPRDADDARYSLNGRDVDGS-RIIV 76 (310)
Q Consensus 10 ~~~l~V~nL~~~~------te~dL~~~F~~~G~V~~v~i~------~~~afV~F~~~eda~~Ai~~lng~~l~Gr-~I~V 76 (310)
+++|||+|||..+ ++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+ .|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 789999999999999999987 46999999999999999999999999999 8887
No 101
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.68 E-value=1.6e-16 Score=131.50 Aligned_cols=76 Identities=42% Similarity=0.681 Sum_probs=71.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCC
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~---~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~ 82 (310)
....++|||+|||+.+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|+++++.
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 3567999999999999999999999999999999997 569999999999999999999999999999999999865
No 102
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=1.5e-16 Score=119.56 Aligned_cols=73 Identities=26% Similarity=0.424 Sum_probs=68.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
..++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.|| .|||..|+|+.|.|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 357999999999999999999999999999999863 39999999999999999 999999999999999998
Q ss_pred CC
Q 021599 81 GG 82 (310)
Q Consensus 81 ~~ 82 (310)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 103
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.7e-17 Score=128.63 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=69.7
Q ss_pred CCCCcEEEEccCCCC-CcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcC--CcccCCCceeeeeccC
Q 021599 7 RYGGTRLYVGRLASR-TRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLN--GRDVDGSRIIVEFARG 81 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~-~te~dL~~~F~~~G~V~~v~i~~--~~afV~F~~~eda~~Ai~~ln--g~~l~Gr~I~V~~ak~ 81 (310)
..++++|||+|||++ +++++|+++|.+||+|..|.|++ +||||+|++.++|+.||+.|+ +.+|+|+.|.|++++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 456899999999998 99999999999999999999975 799999999999999999886 4569999999999985
Q ss_pred CC
Q 021599 82 GP 83 (310)
Q Consensus 82 ~~ 83 (310)
..
T Consensus 102 ~~ 103 (112)
T 1x4f_A 102 YK 103 (112)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 104
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=4e-17 Score=125.38 Aligned_cols=76 Identities=24% Similarity=0.388 Sum_probs=68.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCC--eeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCc----ccCC
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGR--IRDVDMKR--------DFAFVEFSDPRDADDARYSLNGR----DVDG 71 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~--V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~----~l~G 71 (310)
......+|||+|||+.+|+++|+++|++||. |..|.|++ |||||+|.+.++|+.||+.|||. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4567789999999999999999999999995 66888753 49999999999999999999997 4899
Q ss_pred CceeeeeccC
Q 021599 72 SRIIVEFARG 81 (310)
Q Consensus 72 r~I~V~~ak~ 81 (310)
+.|.|+||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999973
No 105
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=2.2e-16 Score=126.52 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=70.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
..+++|||+||+..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|+++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 4568999999999999999999999999999999963 599999999999999999999999999999999998
Q ss_pred CCC
Q 021599 81 GGP 83 (310)
Q Consensus 81 ~~~ 83 (310)
...
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 653
No 106
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=120.57 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=69.6
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEE-EEeCC----eEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV-DMKRD----FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v-~i~~~----~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
....++|||+|||+.+++++|+++|.+||.|..| .|+.+ .|||+|.+.++|+.||..|||..|+|+.|.|+++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3457899999999999999999999999999999 46543 599999999999999999999999999999999986
Q ss_pred C
Q 021599 82 G 82 (310)
Q Consensus 82 ~ 82 (310)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 107
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.7e-17 Score=126.59 Aligned_cols=72 Identities=35% Similarity=0.586 Sum_probs=67.7
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
.++|||+||++.+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.|| .|||+.|+|+.|.|+++++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4799999999999999999999999999999996 359999999999999999 9999999999999999975
Q ss_pred C
Q 021599 82 G 82 (310)
Q Consensus 82 ~ 82 (310)
.
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 108
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=119.59 Aligned_cols=75 Identities=24% Similarity=0.355 Sum_probs=67.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC---eEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCC
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~---~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~ 83 (310)
....+|||+|||+.+++++|+++|.+||+|..|.+.+. ||||+|.+.++|++||+ |||+.|+|+.|.|+++....
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 45679999999999999999999999999999844322 99999999999999998 99999999999999987553
No 109
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=118.71 Aligned_cols=77 Identities=17% Similarity=0.256 Sum_probs=70.5
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
.....++|||+|||+.+++++|+++|.+| .|..|.|+. +||||+|.+.++|+.||. |||..|+|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 44678999999999999999999999999 999998864 399999999999999998 999999999999999
Q ss_pred ccCCCC
Q 021599 79 ARGGPR 84 (310)
Q Consensus 79 ak~~~~ 84 (310)
++..+.
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 987643
No 110
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=1.9e-16 Score=126.71 Aligned_cols=74 Identities=26% Similarity=0.422 Sum_probs=68.6
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
.++|||+||+..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.|| .|||..|+|+.|.|++++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 57999999999999999999999999999998863 49999999999999999 8999999999999999986
Q ss_pred CCC
Q 021599 82 GPR 84 (310)
Q Consensus 82 ~~~ 84 (310)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 111
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=4.2e-17 Score=124.25 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=65.8
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
....++|||+|||+.+++++|+++|.+||.|..+.++ ++||||+|.+.++|++||+.|||+.|+|+.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3456999999999999999999999999998766554 35999999999999999999999999999999999
Q ss_pred cc
Q 021599 79 AR 80 (310)
Q Consensus 79 ak 80 (310)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 86
No 112
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.4e-16 Score=124.70 Aligned_cols=75 Identities=24% Similarity=0.426 Sum_probs=69.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
.++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+. +++.|+|+.|.|+++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 58999999999999999999999999999999864 4999999999999999977 99999999999999987
Q ss_pred CCCC
Q 021599 82 GPRG 85 (310)
Q Consensus 82 ~~~~ 85 (310)
+...
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 6543
No 113
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=2.2e-16 Score=126.51 Aligned_cols=78 Identities=33% Similarity=0.471 Sum_probs=70.2
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 4 YDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 4 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
......+++|||+|| .+++++|+++|.+||+|..|.|. ++||||+|.+.++|+.||+.|||..|+|+.|.|+++++
T Consensus 33 ~~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 33 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp --CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 334567899999996 69999999999999999999987 57999999999999999999999999999999999986
Q ss_pred CC
Q 021599 82 GP 83 (310)
Q Consensus 82 ~~ 83 (310)
.+
T Consensus 111 ~~ 112 (121)
T 2bz2_A 111 QP 112 (121)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 114
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=3.8e-16 Score=123.27 Aligned_cols=76 Identities=25% Similarity=0.435 Sum_probs=70.7
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-----CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-----~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
...+++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|+++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 35678999999999999999999999999999999964 5999999999999999999999999999999999975
Q ss_pred C
Q 021599 82 G 82 (310)
Q Consensus 82 ~ 82 (310)
.
T Consensus 85 ~ 85 (115)
T 3lqv_A 85 N 85 (115)
T ss_dssp H
T ss_pred C
Confidence 3
No 115
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=8.9e-17 Score=124.10 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=66.4
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---------CCeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~---------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
.....++|||+||+..+++++|+++|.+|| |..|.|+ ++||||+|.+.++|+.|| .|||..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345679999999999999999999999999 9999985 359999999999999999 99999999999999
Q ss_pred eeccCC
Q 021599 77 EFARGG 82 (310)
Q Consensus 77 ~~ak~~ 82 (310)
+++++.
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999864
No 116
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.66 E-value=3.3e-16 Score=117.36 Aligned_cols=74 Identities=24% Similarity=0.473 Sum_probs=66.8
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 5 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
.+....++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+ +++..|+|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 4557789999999999999999999999999999999863 499999999999999995 5788999999999
Q ss_pred eec
Q 021599 77 EFA 79 (310)
Q Consensus 77 ~~a 79 (310)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 117
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=131.64 Aligned_cols=73 Identities=18% Similarity=0.295 Sum_probs=67.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcC--CeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYG--RIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G--~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
..++|||+||++.+++++|+++|.+|| +|..|.|+. |||||+|.+.++|+.||+.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 999999863 3999999999999999999999999999999999
Q ss_pred ccC
Q 021599 79 ARG 81 (310)
Q Consensus 79 ak~ 81 (310)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 118
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.65 E-value=1.6e-16 Score=129.67 Aligned_cols=77 Identities=43% Similarity=0.671 Sum_probs=71.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
...++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4578999999999999999999999999999999864 39999999999999999999999999999999999
Q ss_pred cCCCC
Q 021599 80 RGGPR 84 (310)
Q Consensus 80 k~~~~ 84 (310)
++...
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86543
No 119
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8.2e-17 Score=120.17 Aligned_cols=73 Identities=25% Similarity=0.398 Sum_probs=68.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
.++++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 5689999999999999999999999999999999863 49999999999999999999999999999998876
Q ss_pred c
Q 021599 80 R 80 (310)
Q Consensus 80 k 80 (310)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 120
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=8.3e-18 Score=133.29 Aligned_cols=80 Identities=24% Similarity=0.386 Sum_probs=72.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE--------EEEeC--------CeEEEEECCHHHHHHHHHhcCCccc
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD--------VDMKR--------DFAFVEFSDPRDADDARYSLNGRDV 69 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~--------v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l 69 (310)
+..+.++|||+|||..+++++|+++|.+||.|.. |.|+. +||||+|.+.++|+.||+.|||..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999999999999999999999988 66643 4999999999999999999999999
Q ss_pred CCCceeeeeccCCCCC
Q 021599 70 DGSRIIVEFARGGPRG 85 (310)
Q Consensus 70 ~Gr~I~V~~ak~~~~~ 85 (310)
+|+.|.|+++++.+..
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999876554
No 121
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=121.97 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=67.9
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
.....++|||+|||+.+++++|+++|.+||. +.|.|+. +||||+|.+.++|++|| .||+..|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 3456789999999999999999999999995 4888863 49999999999999999 5899999999999999
Q ss_pred ccCCCC
Q 021599 79 ARGGPR 84 (310)
Q Consensus 79 ak~~~~ 84 (310)
+.....
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 886543
No 122
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=9.2e-17 Score=121.21 Aligned_cols=72 Identities=29% Similarity=0.499 Sum_probs=65.1
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCC
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~ 82 (310)
++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.+ |+.||..|||..|+|+.|.|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 6899999999999999999999999999999963 49999999999 99999999999999999999999865
Q ss_pred C
Q 021599 83 P 83 (310)
Q Consensus 83 ~ 83 (310)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 123
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=124.66 Aligned_cols=77 Identities=19% Similarity=0.398 Sum_probs=69.6
Q ss_pred CCCCcEEEE--ccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCCccc-----CCCceeee
Q 021599 7 RYGGTRLYV--GRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGRDV-----DGSRIIVE 77 (310)
Q Consensus 7 ~~~~~~l~V--~nL~~~~te~dL~~~F~~~G~V~~v~i~~--~~afV~F~~~eda~~Ai~~lng~~l-----~Gr~I~V~ 77 (310)
..++.+||| +||++.+++++|+++|++||+|..|.|+. +||||+|.+.++|++||+.|||.+| .|..|.|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 356789999 77999999999999999999999999874 5999999999999999999999988 67889999
Q ss_pred eccCCC
Q 021599 78 FARGGP 83 (310)
Q Consensus 78 ~ak~~~ 83 (310)
|++..+
T Consensus 102 ~a~~~p 107 (114)
T 2cq2_A 102 FVEKVQ 107 (114)
T ss_dssp EESCCC
T ss_pred ecccCc
Confidence 987544
No 124
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.65 E-value=5.2e-16 Score=132.42 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=70.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
..+++|||+||++.+++++|+++|.+||+|+.|.|+. +||||+|.+.++|++||+.|||..|+|+.|.|+|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4578999999999999999999999999999999964 699999999999999999999999999999999997
Q ss_pred CC
Q 021599 81 GG 82 (310)
Q Consensus 81 ~~ 82 (310)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 53
No 125
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=120.14 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=69.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE---eCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCC
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM---KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i---~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~ 83 (310)
....++|||+|||..+++++|+++|.+||.|..+.. .++||||+|.+.++|+.||+.|||..|+|+.|.|+++.+..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 345789999999999999999999999999887722 24699999999999999999999999999999999998664
Q ss_pred C
Q 021599 84 R 84 (310)
Q Consensus 84 ~ 84 (310)
.
T Consensus 93 ~ 93 (96)
T 1fjc_A 93 G 93 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 126
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.65 E-value=4.1e-16 Score=122.43 Aligned_cols=79 Identities=23% Similarity=0.396 Sum_probs=67.0
Q ss_pred CCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCcee
Q 021599 4 YDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (310)
Q Consensus 4 ~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~ 75 (310)
.++....++|||+||+..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||..| +..|+|+.|.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 34556789999999999999999999999999999999863 49999999999999999877 4999999999
Q ss_pred eeeccCCC
Q 021599 76 VEFARGGP 83 (310)
Q Consensus 76 V~~ak~~~ 83 (310)
|+++.++.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998654
No 127
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=4.9e-16 Score=124.98 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=65.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--Ce-EEEEECCHHHHHHHHHhcCCcccCC--CceeeeeccCC
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DF-AFVEFSDPRDADDARYSLNGRDVDG--SRIIVEFARGG 82 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--~~-afV~F~~~eda~~Ai~~lng~~l~G--r~I~V~~ak~~ 82 (310)
..|||+||++.+++++|+++|.+||+|+.|.|+. +| |||+|.+.++|+.||+.|||..|.| ..|.|++|++.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 3467999999999999999999999999998864 66 9999999999999999999999988 58999999865
No 128
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=1.3e-16 Score=131.05 Aligned_cols=76 Identities=18% Similarity=0.148 Sum_probs=67.8
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~-------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
....++|||+|||+++++++|+++|.+|| |+.|.|+ ++||||+|.+.++|++|| .||+.+|+|+.|.|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999 7788886 459999999999999999 89999999999999998
Q ss_pred cCCCC
Q 021599 80 RGGPR 84 (310)
Q Consensus 80 k~~~~ 84 (310)
.....
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 86544
No 129
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.6e-16 Score=122.10 Aligned_cols=76 Identities=16% Similarity=0.373 Sum_probs=68.9
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCccc--------C
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDV--------D 70 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l--------~ 70 (310)
.....++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 345679999999999999999999999999999999864 4999999999999999999999999 5
Q ss_pred CCceeeeeccC
Q 021599 71 GSRIIVEFARG 81 (310)
Q Consensus 71 Gr~I~V~~ak~ 81 (310)
++.|.|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 67799999874
No 130
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=6.8e-16 Score=129.60 Aligned_cols=75 Identities=23% Similarity=0.386 Sum_probs=68.3
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe----CCeEEEEECCHHHHHHHHHhcCCcccCC--CceeeeeccCC
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK----RDFAFVEFSDPRDADDARYSLNGRDVDG--SRIIVEFARGG 82 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~----~~~afV~F~~~eda~~Ai~~lng~~l~G--r~I~V~~ak~~ 82 (310)
...+|||+||++.+++++|+++|.+||+|+.|.|+ ++||||+|.+.++|+.||+.|||..|.| +.|.|+|+++.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 34678999999999999999999999999999986 2499999999999999999999999965 99999999865
Q ss_pred C
Q 021599 83 P 83 (310)
Q Consensus 83 ~ 83 (310)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 3
No 131
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.64 E-value=9.6e-16 Score=127.57 Aligned_cols=76 Identities=43% Similarity=0.684 Sum_probs=70.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
...++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999999864 49999999999999999999999999999999999
Q ss_pred cCCC
Q 021599 80 RGGP 83 (310)
Q Consensus 80 k~~~ 83 (310)
++..
T Consensus 148 ~~~~ 151 (158)
T 2kn4_A 148 RYGR 151 (158)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8653
No 132
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=3.2e-16 Score=139.08 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=66.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcC--CeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYG--RIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G--~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
..++|||+||++.|++++|+++|.+|| +|+.|.|+. +||||+|.+.++|++||+.||+++|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 999999864 3999999999999999999999999999999999
Q ss_pred cc
Q 021599 79 AR 80 (310)
Q Consensus 79 ak 80 (310)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 133
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-16 Score=127.82 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=66.0
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEE-EEe-------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDV-DMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v-~i~-------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
....++|||+|||+.+++++|++||.+||.|..+ .|. ++||||+|.+.++|++||+ |||+.|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4567999999999999999999999999998763 332 4599999999999999998 999999999999999
Q ss_pred ccC
Q 021599 79 ARG 81 (310)
Q Consensus 79 ak~ 81 (310)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 134
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=117.98 Aligned_cols=77 Identities=23% Similarity=0.331 Sum_probs=68.9
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
.....++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||. +++.|+|+.|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 345678999999999999999999999999999999864 399999999999999997 4789999999999
Q ss_pred eccCCCC
Q 021599 78 FARGGPR 84 (310)
Q Consensus 78 ~ak~~~~ 84 (310)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqg_A 89 LPNSKQS 95 (103)
T ss_dssp CCCTTCC
T ss_pred ecCCCCc
Confidence 9987644
No 135
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.8e-16 Score=120.03 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=68.5
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE-EEEe-------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD-VDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~-v~i~-------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
+....++|||+|||+.+++++|+++|.+||.|.. |.|+ ++||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 4456899999999999999999999999999987 7774 46999999999999999977 9999999999999
Q ss_pred eccCC
Q 021599 78 FARGG 82 (310)
Q Consensus 78 ~ak~~ 82 (310)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98754
No 136
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=2.9e-16 Score=114.35 Aligned_cols=67 Identities=19% Similarity=0.426 Sum_probs=62.8
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 12 ~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
+|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+ |||..|+|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999998853 499999999999999996 9999999999999875
No 137
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-16 Score=124.58 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=68.9
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCe-eEEEEe-------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI-RDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V-~~v~i~-------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
.....++|||+|||+.+++++|++||.+||.| ..|.|+ ++||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 44567999999999999999999999999999 778885 46999999999999999976 9999999999999
Q ss_pred eccCC
Q 021599 78 FARGG 82 (310)
Q Consensus 78 ~ak~~ 82 (310)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98753
No 138
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=5.7e-16 Score=126.07 Aligned_cols=73 Identities=36% Similarity=0.519 Sum_probs=67.7
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
....++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3567999999999999999999999999999999985 35999999999999999999999999999999998
Q ss_pred c
Q 021599 79 A 79 (310)
Q Consensus 79 a 79 (310)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 139
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.1e-16 Score=117.91 Aligned_cols=73 Identities=26% Similarity=0.404 Sum_probs=65.4
Q ss_pred CcEEEEccCCCCCcHHH----HHHHHHhcC-CeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCCC
Q 021599 10 GTRLYVGRLASRTRSRD----LEEIFSRYG-RIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 84 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~d----L~~~F~~~G-~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~~ 84 (310)
.|.|||+|||+.+++++ |.++|.+|| +|..|. .|||||+|.+.++|..||+.|||+.|.|+.|.|.+|+....
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 34499999999999988 558999994 999983 49999999999999999999999999999999999986643
No 140
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-16 Score=122.40 Aligned_cols=77 Identities=25% Similarity=0.384 Sum_probs=67.1
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE-------eCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM-------KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i-------~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
....++|||+||+..+++++|+++|.+||.|..+.+ .++||||+|.+.++|++||+ |||..|+|+.|.|+++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 346789999999999999999999999997755211 25699999999999999998 9999999999999999
Q ss_pred cCCCC
Q 021599 80 RGGPR 84 (310)
Q Consensus 80 k~~~~ 84 (310)
++...
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 86543
No 141
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=127.06 Aligned_cols=77 Identities=25% Similarity=0.414 Sum_probs=69.6
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE--EEEe--------CCeEEEEECCHHHHHHHHHhcCCc----ccCCC
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD--VDMK--------RDFAFVEFSDPRDADDARYSLNGR----DVDGS 72 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~--v~i~--------~~~afV~F~~~eda~~Ai~~lng~----~l~Gr 72 (310)
....++|||+||++.+++++|+++|.+||.|.. |.|+ ++||||+|.+. +|+.||..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999966 7775 35999999999 999999999999 99999
Q ss_pred ceeeeeccCCCC
Q 021599 73 RIIVEFARGGPR 84 (310)
Q Consensus 73 ~I~V~~ak~~~~ 84 (310)
.|.|+++++...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987543
No 142
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=3.1e-16 Score=124.92 Aligned_cols=75 Identities=17% Similarity=0.101 Sum_probs=68.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCC---eeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCcee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGR---IRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~---V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~ 75 (310)
+....++|||+|||+++++++|++||..||. |..|.|+. +||||+|.+.++|++||+ ||++.|+|+.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 4456799999999999999999999999999 88888863 499999999999999998 999999999999
Q ss_pred eeeccC
Q 021599 76 VEFARG 81 (310)
Q Consensus 76 V~~ak~ 81 (310)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999863
No 143
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=2.8e-16 Score=118.40 Aligned_cols=74 Identities=16% Similarity=0.345 Sum_probs=68.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCC
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~ 82 (310)
...++|||+|||+.+++++|+++|.+| +|..|.|. ++||||+|.+.++|+.||+.|||..|+|+.|.|+++...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 356899999999999999999999999 99998875 579999999999999999999999999999999998743
No 144
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.9e-16 Score=114.07 Aligned_cols=68 Identities=25% Similarity=0.500 Sum_probs=64.1
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||..|+ ..|+|+.|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5799999999999999999999999999998853 499999999999999999999 9999999999986
No 145
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=1.2e-15 Score=114.03 Aligned_cols=70 Identities=23% Similarity=0.465 Sum_probs=65.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhc----C-------CeeEEEEe--CCeEEEEECCHHHHHHHHHhcCCcccCCCce
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRY----G-------RIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRI 74 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~----G-------~V~~v~i~--~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I 74 (310)
...++|||+|||+.+++++|+++|.+| | +|..+.+. ++||||+|.+.++|+.|| .|||..|+|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 456899999999999999999999999 8 99999987 579999999999999999 999999999999
Q ss_pred eeee
Q 021599 75 IVEF 78 (310)
Q Consensus 75 ~V~~ 78 (310)
.|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9873
No 146
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.61 E-value=1.2e-15 Score=123.60 Aligned_cols=73 Identities=25% Similarity=0.462 Sum_probs=67.3
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC---Ce-EEEEECCHHHHHHHHHhcCCcccCC--CceeeeeccCC
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---DF-AFVEFSDPRDADDARYSLNGRDVDG--SRIIVEFARGG 82 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~---~~-afV~F~~~eda~~Ai~~lng~~l~G--r~I~V~~ak~~ 82 (310)
-..|||+||++.+++++|.++|.+||+|..|.|+. +| |||+|.+.++|+.||+.|||..|.| ..|.|+|++..
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 35788999999999999999999999999998864 46 9999999999999999999999988 88999999865
No 147
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=6.4e-16 Score=121.64 Aligned_cols=72 Identities=18% Similarity=0.171 Sum_probs=66.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~-------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
...++|||+|||+.+++++|++||.+| .|..|.|+ ++||||+|.+.++|++|| .||+..|+|+.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 345799999999999999999999999 89999986 459999999999999999 799999999999998886
Q ss_pred C
Q 021599 81 G 81 (310)
Q Consensus 81 ~ 81 (310)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 148
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=125.57 Aligned_cols=80 Identities=29% Similarity=0.498 Sum_probs=70.4
Q ss_pred CCCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE--------EEEe-----CCeEEEEECCHHHHHHHHHhcCCccc
Q 021599 3 RYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD--------VDMK-----RDFAFVEFSDPRDADDARYSLNGRDV 69 (310)
Q Consensus 3 ~~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~--------v~i~-----~~~afV~F~~~eda~~Ai~~lng~~l 69 (310)
.+.....+++|||+||++.+++++|+++|.+||.|.. |.+. ++||||+|.+.++|+.||..|||..|
T Consensus 38 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 38 SYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp TCCCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred ccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 3445667899999999999999999999999998865 3332 35999999999999999999999999
Q ss_pred CCCceeeeeccCC
Q 021599 70 DGSRIIVEFARGG 82 (310)
Q Consensus 70 ~Gr~I~V~~ak~~ 82 (310)
+|+.|.|++++..
T Consensus 118 ~g~~l~V~~a~~~ 130 (143)
T 3egn_A 118 FGKPMVVQFARSA 130 (143)
T ss_dssp TTEECEEEECCCS
T ss_pred CCcEEEEEECCCC
Confidence 9999999999864
No 149
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=1.1e-15 Score=125.08 Aligned_cols=75 Identities=17% Similarity=0.092 Sum_probs=68.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCC---eeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCcee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGR---IRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~---V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~ 75 (310)
+....++|||+|||+.+|+++|+++|.+||. |..|.|+. +||||+|.+.++|++||+ ||+.+|+|+.|.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3456799999999999999999999999999 78888863 499999999999999998 999999999999
Q ss_pred eeeccC
Q 021599 76 VEFARG 81 (310)
Q Consensus 76 V~~ak~ 81 (310)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998863
No 150
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=6.3e-16 Score=120.82 Aligned_cols=76 Identities=12% Similarity=0.017 Sum_probs=69.1
Q ss_pred CCCCCCcEEEEccCCCCCcHHHHHHHHHhcCC---eeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCce
Q 021599 5 DDRYGGTRLYVGRLASRTRSRDLEEIFSRYGR---IRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRI 74 (310)
Q Consensus 5 ~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~---V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I 74 (310)
++....++|||+|||+.+++++|++||..||. |..|.|+. +||||+|.+.++|++||+ ||+..|+|+.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 34567899999999999999999999999998 88888863 499999999999999998 99999999999
Q ss_pred eeeeccC
Q 021599 75 IVEFARG 81 (310)
Q Consensus 75 ~V~~ak~ 81 (310)
.|.++..
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9999864
No 151
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1e-15 Score=115.09 Aligned_cols=76 Identities=29% Similarity=0.451 Sum_probs=65.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCCC
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 84 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~---~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~~ 84 (310)
...++|||+|||+.+++++|+++|.+||+|..|.|+ ++||||+|.+.++|++|+.. ...+.|..|.|.++.+...
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 457999999999999999999999999999999997 57999999999999865422 4566899999999886644
Q ss_pred C
Q 021599 85 G 85 (310)
Q Consensus 85 ~ 85 (310)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 152
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=1.6e-15 Score=114.77 Aligned_cols=73 Identities=30% Similarity=0.572 Sum_probs=59.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCCc--ccCCCceeeeecc
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGR--DVDGSRIIVEFAR 80 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~---~~~afV~F~~~eda~~Ai~~lng~--~l~Gr~I~V~~ak 80 (310)
.....++|||+|||+++++++|+++|++||+|..|.|+ +|||||+|.+.++|++ |++. .+.|+.|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 45678999999999999999999999999999999997 5799999999999884 3444 4568899999987
Q ss_pred CC
Q 021599 81 GG 82 (310)
Q Consensus 81 ~~ 82 (310)
++
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 54
No 153
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=1.8e-15 Score=131.91 Aligned_cols=75 Identities=24% Similarity=0.293 Sum_probs=70.2
Q ss_pred CCCcEEEEccCC-CCCcHHHHHHHHHhcCCeeEEEEeC---CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCC
Q 021599 8 YGGTRLYVGRLA-SRTRSRDLEEIFSRYGRIRDVDMKR---DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (310)
Q Consensus 8 ~~~~~l~V~nL~-~~~te~dL~~~F~~~G~V~~v~i~~---~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~ 82 (310)
.++++|||+||+ +.+++++|+++|.+||.|..|.|++ +||||+|.+.++|+.||+.|||..|.|+.|.|.+++..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 357899999999 8999999999999999999999974 69999999999999999999999999999999998754
No 154
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=1.6e-15 Score=110.29 Aligned_cols=67 Identities=21% Similarity=0.478 Sum_probs=62.2
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 12 ~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
+|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+ +++..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999885 3599999999999999996 5899999999999875
No 155
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.57 E-value=5.1e-15 Score=129.29 Aligned_cols=77 Identities=29% Similarity=0.442 Sum_probs=68.6
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
...+.++|||+|||+.+++++|+++|++||+|+.|.|++ +||||+|.+.++|+.||+.||+..+.|+.|.|.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 345678999999999999999999999999999999864 399999999999999999999999999999999
Q ss_pred eccCC
Q 021599 78 FARGG 82 (310)
Q Consensus 78 ~ak~~ 82 (310)
++...
T Consensus 91 ~~~~~ 95 (213)
T 4f02_A 91 WSQRD 95 (213)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 88644
No 156
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.8e-15 Score=119.72 Aligned_cols=74 Identities=14% Similarity=0.066 Sum_probs=65.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCe----eEEEEe-------CCeEEEEECCHHHHHHHHHhcCCcccCCCcee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRI----RDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V----~~v~i~-------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~ 75 (310)
....++|||+|||+.+++++|++||.+||.| ..|.|+ ++||||+|.+.++|++||+. |+..|+|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3567899999999999999999999999975 577775 35999999999999999975 99999999999
Q ss_pred eeeccC
Q 021599 76 VEFARG 81 (310)
Q Consensus 76 V~~ak~ 81 (310)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 157
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.56 E-value=2e-15 Score=116.59 Aligned_cols=74 Identities=19% Similarity=0.416 Sum_probs=67.7
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
....++|||+|||+.+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||. ++..|+|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 34568999999999999999999999999999999864 699999999999999997 999999999999998
Q ss_pred cCC
Q 021599 80 RGG 82 (310)
Q Consensus 80 k~~ 82 (310)
...
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 754
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.56 E-value=6.7e-15 Score=128.54 Aligned_cols=74 Identities=20% Similarity=0.412 Sum_probs=69.1
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCC
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~ 82 (310)
..++|||+||++.+++++|+++|.+||.|+.|.|+ ++||||+|.+.++|++||+.|||.+|+|+.|.|.+++++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 45789999999999999999999999999999986 359999999999999999999999999999999999754
No 159
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.55 E-value=8e-15 Score=118.24 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=64.3
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCee--EEEEe-------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIR--DVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~--~v~i~-------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
....++|||+|||+.+++++|+++|.+| .|+ .|.|+ ++||||+|.+.++|++||+ +++..|+|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 3457899999999999999999999999 676 88886 4599999999999999996 47799999999998
Q ss_pred ecc
Q 021599 78 FAR 80 (310)
Q Consensus 78 ~ak 80 (310)
++.
T Consensus 117 ~a~ 119 (126)
T 2hgm_A 117 KSS 119 (126)
T ss_dssp EEC
T ss_pred ECC
Confidence 875
No 160
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.55 E-value=8.5e-15 Score=130.42 Aligned_cols=76 Identities=24% Similarity=0.482 Sum_probs=69.0
Q ss_pred CCCcEEEEccCCCCC---------cHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCCccc-------
Q 021599 8 YGGTRLYVGRLASRT---------RSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDV------- 69 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~---------te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~~eda~~Ai~~lng~~l------- 69 (310)
..+++|||+||+..+ ++++|+++|.+||+|+.|.|+ ++||||+|.+.++|+.||+.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e 211 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKE 211 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccccc
Confidence 457899999999998 799999999999999999997 57999999999999999999999999
Q ss_pred -----CCCceeeeeccCCC
Q 021599 70 -----DGSRIIVEFARGGP 83 (310)
Q Consensus 70 -----~Gr~I~V~~ak~~~ 83 (310)
.|+.|.|.||+..+
T Consensus 212 ~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 212 WDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp GGGGGGSCCCEEEECC---
T ss_pred ccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 161
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=1.6e-14 Score=127.59 Aligned_cols=76 Identities=26% Similarity=0.435 Sum_probs=71.4
Q ss_pred CCCCcEEEEccCCC-CCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCC
Q 021599 7 RYGGTRLYVGRLAS-RTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (310)
Q Consensus 7 ~~~~~~l~V~nL~~-~~te~dL~~~F~~~G~V~~v~i~---~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~ 82 (310)
..++++|||+|||+ .+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|.|+.|.|+++...
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 35689999999999 99999999999999999999997 579999999999999999999999999999999999754
No 162
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.6e-14 Score=119.54 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=69.7
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
.....++|||+|||..+++++|+++|.+||.|..+.|+. +||||+|.+.++|+.||..|||..|+|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 345678999999999999999999999999999999863 399999999999999999999999999999999
Q ss_pred ecc
Q 021599 78 FAR 80 (310)
Q Consensus 78 ~ak 80 (310)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.54 E-value=1.8e-14 Score=124.79 Aligned_cols=77 Identities=25% Similarity=0.472 Sum_probs=71.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
...++|||+||+..+++++|+++|.+||+|+.|.|+. +||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3468999999999999999999999999999999863 49999999999999999999999999999999999
Q ss_pred cCCCC
Q 021599 80 RGGPR 84 (310)
Q Consensus 80 k~~~~ 84 (310)
.+.+.
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87643
No 164
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.53 E-value=2.8e-14 Score=129.22 Aligned_cols=75 Identities=25% Similarity=0.452 Sum_probs=70.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC---CeEEEEECCHHHHHHHHHhcCCcccC-CCceeeeecc
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR---DFAFVEFSDPRDADDARYSLNGRDVD-GSRIIVEFAR 80 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~---~~afV~F~~~eda~~Ai~~lng~~l~-Gr~I~V~~ak 80 (310)
....+++|||+||+..+++++|+++|.+||.|+.|.|+. +||||+|.+.++|+.||+.|||..|+ |+.|.|+|++
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 445678999999999999999999999999999999974 69999999999999999999999999 9999999986
No 165
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.53 E-value=2.1e-14 Score=122.76 Aligned_cols=77 Identities=22% Similarity=0.508 Sum_probs=71.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
...++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5679999999999999999999999999999999863 49999999999999999999999999999999999
Q ss_pred cCCCC
Q 021599 80 RGGPR 84 (310)
Q Consensus 80 k~~~~ 84 (310)
.+...
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86543
No 166
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.53 E-value=2.8e-14 Score=118.29 Aligned_cols=74 Identities=30% Similarity=0.543 Sum_probs=69.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
.++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999864 4999999999999999999999999999999999986
Q ss_pred CC
Q 021599 82 GP 83 (310)
Q Consensus 82 ~~ 83 (310)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.52 E-value=2.1e-14 Score=119.46 Aligned_cols=75 Identities=33% Similarity=0.518 Sum_probs=69.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
++++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|+|..|.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 568999999999999999999999999999998853 599999999999999999999999999999999998
Q ss_pred CCC
Q 021599 81 GGP 83 (310)
Q Consensus 81 ~~~ 83 (310)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 168
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=2.1e-14 Score=123.28 Aligned_cols=74 Identities=27% Similarity=0.461 Sum_probs=69.8
Q ss_pred CCcEEEEccCCC-CCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCC
Q 021599 9 GGTRLYVGRLAS-RTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (310)
Q Consensus 9 ~~~~l~V~nL~~-~~te~dL~~~F~~~G~V~~v~i~---~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~ 82 (310)
.+++|||+|||. .+++++|+++|.+||.|..|.|+ ++||||+|.+.++|+.||+.|||..|.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 468999999999 99999999999999999999997 579999999999999999999999999999999999754
No 169
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.51 E-value=3.7e-14 Score=120.99 Aligned_cols=77 Identities=25% Similarity=0.424 Sum_probs=66.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
...++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||.. +|..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3568999999999999999999999999999999863 4999999999999999976 799999999999999
Q ss_pred cCCCCC
Q 021599 80 RGGPRG 85 (310)
Q Consensus 80 k~~~~~ 85 (310)
.++...
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 876543
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.50 E-value=3.6e-14 Score=118.01 Aligned_cols=73 Identities=23% Similarity=0.427 Sum_probs=67.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
..++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|++||+ |+|..|+|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 357999999999999999999999999999999864 399999999999999997 89999999999999998
Q ss_pred CC
Q 021599 81 GG 82 (310)
Q Consensus 81 ~~ 82 (310)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 171
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=4.2e-14 Score=118.19 Aligned_cols=73 Identities=23% Similarity=0.525 Sum_probs=68.0
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
....++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|||..|+|+.|.|++
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578999999999999999999999999999999854 3999999999999999999999999999999998
Q ss_pred c
Q 021599 79 A 79 (310)
Q Consensus 79 a 79 (310)
|
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 7
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.50 E-value=5.3e-14 Score=121.87 Aligned_cols=73 Identities=29% Similarity=0.464 Sum_probs=66.9
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
.++|||+|||..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 4799999999999999999999999999999985 45999999999999999999999999999999988764
Q ss_pred C
Q 021599 82 G 82 (310)
Q Consensus 82 ~ 82 (310)
.
T Consensus 108 ~ 108 (216)
T 2qfj_A 108 I 108 (216)
T ss_dssp C
T ss_pred c
Confidence 3
No 173
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.50 E-value=5.8e-14 Score=127.17 Aligned_cols=77 Identities=25% Similarity=0.467 Sum_probs=71.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHH----HHHHhcCCeeEEEEeC-----CeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLE----EIFSRYGRIRDVDMKR-----DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~----~~F~~~G~V~~v~i~~-----~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
+...+++|||+||++.+++++|+ ++|.+||.|..|.|++ +||||+|.+.++|+.||+.|||..|.|+.|.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45678999999999999999966 8999999999999865 69999999999999999999999999999999
Q ss_pred eeccCC
Q 021599 77 EFARGG 82 (310)
Q Consensus 77 ~~ak~~ 82 (310)
++++..
T Consensus 85 ~~a~~~ 90 (282)
T 3pgw_A 85 QYAKTD 90 (282)
T ss_pred EEeccC
Confidence 999754
No 174
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8e-14 Score=109.70 Aligned_cols=78 Identities=24% Similarity=0.321 Sum_probs=68.1
Q ss_pred CCCCCcEEEEccCCCCCc-----------HHHHHHHHHhcCCeeEEEEe----CCeEEEEECCHHHHHHHHHhcCCcccC
Q 021599 6 DRYGGTRLYVGRLASRTR-----------SRDLEEIFSRYGRIRDVDMK----RDFAFVEFSDPRDADDARYSLNGRDVD 70 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~t-----------e~dL~~~F~~~G~V~~v~i~----~~~afV~F~~~eda~~Ai~~lng~~l~ 70 (310)
......+|+|.||-.... +++|+++|.+||+|..|.|. ++||||+|.+.++|+.||+.|||..|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345688999999954432 57999999999999999775 579999999999999999999999999
Q ss_pred CCceeeeeccCCC
Q 021599 71 GSRIIVEFARGGP 83 (310)
Q Consensus 71 Gr~I~V~~ak~~~ 83 (310)
|+.|.|+++.+..
T Consensus 91 gr~l~v~~a~~~~ 103 (112)
T 2dit_A 91 GRQITAQAWDGTT 103 (112)
T ss_dssp TEECEEEECCSCC
T ss_pred CcEEEEEEeCCCC
Confidence 9999999998653
No 175
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=7.8e-14 Score=123.07 Aligned_cols=73 Identities=19% Similarity=0.385 Sum_probs=69.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcC-CeeEEEEe---CCeEEEEECCHHHHHHHHHhcCCcccC-CCceeeeeccC
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYG-RIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVD-GSRIIVEFARG 81 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G-~V~~v~i~---~~~afV~F~~~eda~~Ai~~lng~~l~-Gr~I~V~~ak~ 81 (310)
.+++|||+||+..+++++|+++|.+|| +|..|.|+ ++||||+|.+.++|+.||..|||..|+ |+.|.|.|+++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 478999999999999999999999999 99999994 479999999999999999999999999 99999999985
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.49 E-value=6.7e-14 Score=120.11 Aligned_cols=74 Identities=19% Similarity=0.366 Sum_probs=69.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcC-CeeEEEEe---CCeEEEEECCHHHHHHHHHhcCCcccC-CCceeeeeccC
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYG-RIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVD-GSRIIVEFARG 81 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G-~V~~v~i~---~~~afV~F~~~eda~~Ai~~lng~~l~-Gr~I~V~~ak~ 81 (310)
.++++|||+||+..+++++|+++|.+|| +|..|.|+ ++||||+|.+.++|+.||..|||..|+ |+.|.|.|+++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 3478999999999999999999999999 99999994 479999999999999999999999999 99999999975
No 177
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=6e-14 Score=116.10 Aligned_cols=73 Identities=27% Similarity=0.481 Sum_probs=67.9
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCCC
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 83 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~~ 83 (310)
.+|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+.|||..|.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 3799999999999999999999999999999963 499999999999999999999999999999999987553
No 178
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.48 E-value=9.3e-14 Score=118.50 Aligned_cols=76 Identities=24% Similarity=0.397 Sum_probs=68.4
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~ 77 (310)
+....++|||+|||+.+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+. ++..|+|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345679999999999999999999999999999999864 3999999999999999965 8999999999999
Q ss_pred eccCC
Q 021599 78 FARGG 82 (310)
Q Consensus 78 ~ak~~ 82 (310)
++...
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 98754
No 179
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.48 E-value=1.4e-13 Score=114.47 Aligned_cols=73 Identities=30% Similarity=0.497 Sum_probs=67.5
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCC--Cceee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDG--SRIIV 76 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~G--r~I~V 76 (310)
....++|||+|||..+++++|+++|.+||.|..+.|+. +||||+|.+.++|..||..|||..|+| ..|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 35678999999999999999999999999999998863 499999999999999999999999988 99999
Q ss_pred eec
Q 021599 77 EFA 79 (310)
Q Consensus 77 ~~a 79 (310)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 180
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.48 E-value=5e-14 Score=112.95 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=62.5
Q ss_pred cEEEEccC----CCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECC----HHH----HHHHHH--hcCCcc
Q 021599 11 TRLYVGRL----ASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSD----PRD----ADDARY--SLNGRD 68 (310)
Q Consensus 11 ~~l~V~nL----~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~----~ed----a~~Ai~--~lng~~ 68 (310)
+.|||+|| ++.|++++|+++|.+||+|..|.++. |||||+|.+ +++ |..||. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999999864 499999996 333 788888 899999
Q ss_pred cCCCceeeeecc
Q 021599 69 VDGSRIIVEFAR 80 (310)
Q Consensus 69 l~Gr~I~V~~ak 80 (310)
|+|+.|.|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999976
No 181
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.9e-14 Score=111.25 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=59.4
Q ss_pred CCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-----------CCeEEEEECCHHHHHHHHHhcCCcccCCCcee
Q 021599 7 RYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-----------RDFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~-----------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~ 75 (310)
....++|||+|||+.+++++|+++|.+||+|. +.++ ++||||+|.+.++|++||+.|+ .|+|..|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 35678999999999999999999999999999 6664 3599999999999999999883 36666666
Q ss_pred eeecc
Q 021599 76 VEFAR 80 (310)
Q Consensus 76 V~~ak 80 (310)
|..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 55443
No 182
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=7.3e-14 Score=125.74 Aligned_cols=74 Identities=27% Similarity=0.504 Sum_probs=69.6
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
...++|||+|||+.+|+++|+++|.+||.|..|.|. ++||||+|.+.++|..||..|||..|.|+.|.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 456899999999999999999999999999999997 46999999999999999999999999999999999874
No 183
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.47 E-value=1.2e-13 Score=115.35 Aligned_cols=72 Identities=25% Similarity=0.495 Sum_probs=66.1
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccC---CCceeee
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVD---GSRIIVE 77 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~---Gr~I~V~ 77 (310)
...++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|+.||+.|||..+. ++.|.|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 3568999999999999999999999999999999864 39999999999999999999998776 3899999
Q ss_pred ec
Q 021599 78 FA 79 (310)
Q Consensus 78 ~a 79 (310)
||
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.46 E-value=6.1e-14 Score=117.76 Aligned_cols=75 Identities=21% Similarity=0.362 Sum_probs=67.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE---eCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccCC
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM---KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 82 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i---~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~~ 82 (310)
...++|||+|||..+++++|+++|.+||+|..+.. .++||||+|.+.++|..||..|||..|+|+.|.|.|+.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 35689999999999999999999999999988811 2469999999999999999999999999999999999865
No 185
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.45 E-value=2.7e-13 Score=112.20 Aligned_cols=72 Identities=35% Similarity=0.625 Sum_probs=65.4
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--------CCeEEEEECCHHHHHHHHHhcCCcccCCCc--eeee
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--------RDFAFVEFSDPRDADDARYSLNGRDVDGSR--IIVE 77 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~--I~V~ 77 (310)
...++|||+|||..+++++|+++|.+||.|..+.|+ ++||||+|.+.++|+.||+.|||..|.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 456899999999999999999999999999999885 349999999999999999999999999965 7777
Q ss_pred ec
Q 021599 78 FA 79 (310)
Q Consensus 78 ~a 79 (310)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 65
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=2.1e-13 Score=106.37 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=65.3
Q ss_pred CCCcEEEEccCCC-----CCcHHHHHHHHHhcCCeeEEEEeC---------CeEEEEECCHHHHHHHHHhcCCcccCCCc
Q 021599 8 YGGTRLYVGRLAS-----RTRSRDLEEIFSRYGRIRDVDMKR---------DFAFVEFSDPRDADDARYSLNGRDVDGSR 73 (310)
Q Consensus 8 ~~~~~l~V~nL~~-----~~te~dL~~~F~~~G~V~~v~i~~---------~~afV~F~~~eda~~Ai~~lng~~l~Gr~ 73 (310)
.++.+|+|.||-. +.++++|+++|++||+|..|.|+. |||||+|.+.++|++||+.|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 236899999999999999998862 49999999999999999999999999999
Q ss_pred eeeeeccC
Q 021599 74 IIVEFARG 81 (310)
Q Consensus 74 I~V~~ak~ 81 (310)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999863
No 187
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.44 E-value=1.8e-13 Score=118.15 Aligned_cols=71 Identities=14% Similarity=0.324 Sum_probs=64.8
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~-------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
.++|||+|||+.+++++|+++|.+||+|..|.|+ +|||||+|.+.++|+.||..++ ..|+|+.|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999886 3599999999999999997654 699999999999864
No 188
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.43 E-value=3.7e-13 Score=112.39 Aligned_cols=74 Identities=23% Similarity=0.443 Sum_probs=65.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe----------CCeEEEEECCHHHHHHHHHhcCCcccC---CCcee
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK----------RDFAFVEFSDPRDADDARYSLNGRDVD---GSRII 75 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~----------~~~afV~F~~~eda~~Ai~~lng~~l~---Gr~I~ 75 (310)
+.++|||+|||+.+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.|||..+. +..|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999885 249999999999999999999998876 56777
Q ss_pred eeeccCC
Q 021599 76 VEFARGG 82 (310)
Q Consensus 76 V~~ak~~ 82 (310)
|.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 7776644
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.41 E-value=3.4e-13 Score=117.51 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=63.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCe--eEEEEeC------CeEEEEECCHHHHHHHHHhcCCcccCCC----ceee
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRI--RDVDMKR------DFAFVEFSDPRDADDARYSLNGRDVDGS----RIIV 76 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V--~~v~i~~------~~afV~F~~~eda~~Ai~~lng~~l~Gr----~I~V 76 (310)
++.+|||+|||+.++|++|+++|.+||.| ..|.|+. +||||+|.+.++|..||..|||.+|.|. .|.|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 46789999999999999999999999999 8888864 4999999999999999999999999886 4666
Q ss_pred eec
Q 021599 77 EFA 79 (310)
Q Consensus 77 ~~a 79 (310)
.|+
T Consensus 202 k~~ 204 (205)
T 3tyt_A 202 KLC 204 (205)
T ss_dssp EEE
T ss_pred Eec
Confidence 654
No 190
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.41 E-value=3.5e-13 Score=122.62 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=69.7
Q ss_pred CCCCcEEEEccCCCC-CcHHHHHHHHHhcCCeeEEEEeC---------CeEEEEECCHHHHHHHHHhcCCcccCCCceee
Q 021599 7 RYGGTRLYVGRLASR-TRSRDLEEIFSRYGRIRDVDMKR---------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIV 76 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~-~te~dL~~~F~~~G~V~~v~i~~---------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V 76 (310)
....++|||+|||.. +++++|+++|.+||.|..|.|+. +||||+|.+.++|..|| .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 346789999999999 99999999999999999999863 48999999999999999 99999999999999
Q ss_pred eeccCC
Q 021599 77 EFARGG 82 (310)
Q Consensus 77 ~~ak~~ 82 (310)
.|++++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999865
No 191
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.40 E-value=6.5e-13 Score=110.85 Aligned_cols=73 Identities=22% Similarity=0.450 Sum_probs=66.7
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhc----C-------CeeEEEEe--CCeEEEEECCHHHHHHHHHhcCCcccCCCcee
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRY----G-------RIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~----G-------~V~~v~i~--~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~ 75 (310)
+.++|||+|||..+++++|+++|.+| | .|..+.+. ++||||+|.+.++|+.|| .|||..|.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46899999999999999999999999 7 78888775 579999999999999999 8999999999999
Q ss_pred eeeccCC
Q 021599 76 VEFARGG 82 (310)
Q Consensus 76 V~~ak~~ 82 (310)
|.++...
T Consensus 82 v~~~~~~ 88 (172)
T 2g4b_A 82 IRRPHDY 88 (172)
T ss_dssp EECCSSC
T ss_pred ecCCccc
Confidence 9987754
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.40 E-value=1.5e-13 Score=115.36 Aligned_cols=76 Identities=26% Similarity=0.419 Sum_probs=66.1
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE-----EEE--eCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD-----VDM--KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~-----v~i--~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
+....++|||+|||..+++++|+++|.+||.|.. ... .++||||+|.+.++|+.|| .|||..|.|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 4567899999999999999999999999986543 222 2479999999999999999 5999999999999999
Q ss_pred ccCC
Q 021599 79 ARGG 82 (310)
Q Consensus 79 ak~~ 82 (310)
+...
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 9864
No 193
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.39 E-value=7.8e-13 Score=112.91 Aligned_cols=73 Identities=22% Similarity=0.433 Sum_probs=66.0
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhc----C-------CeeEEEEe--CCeEEEEECCHHHHHHHHHhcCCcccCCCcee
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRY----G-------RIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~----G-------~V~~v~i~--~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~ 75 (310)
..++|||+|||+.+++++|+++|.+| | .|..+.+. ++||||+|.+.++|+.|| .|||..|.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46899999999999999999999999 5 67777775 579999999999999999 8999999999999
Q ss_pred eeeccCC
Q 021599 76 VEFARGG 82 (310)
Q Consensus 76 V~~ak~~ 82 (310)
|.++...
T Consensus 82 v~~~~~~ 88 (198)
T 2yh0_A 82 IRRPHDY 88 (198)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998754
No 194
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.6e-12 Score=98.51 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=62.2
Q ss_pred CcEEEEccCC-------CCCcHHHHHHHHHhcCCeeEEEEe---CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 10 GTRLYVGRLA-------SRTRSRDLEEIFSRYGRIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 10 ~~~l~V~nL~-------~~~te~dL~~~F~~~G~V~~v~i~---~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
..+|.|.-.. ..+++++|+++|.+||+|..|.|+ ++||||+|.+.++|+.||+.+++ +.|+.|.|+|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 5566666443 458999999999999999999996 57999999999999999988655 67999999999
Q ss_pred cCCCCC
Q 021599 80 RGGPRG 85 (310)
Q Consensus 80 k~~~~~ 85 (310)
++.+..
T Consensus 88 ~~~~~~ 93 (100)
T 2d9o_A 88 EGQPQD 93 (100)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 876543
No 195
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.37 E-value=7.2e-13 Score=110.07 Aligned_cols=71 Identities=25% Similarity=0.504 Sum_probs=64.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
+.++|||+|||..+++++|+++|.+||+|..|.|+. +||||+|.+.++|+.||+. +..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999864 4999999999999999975 578899999998876
Q ss_pred C
Q 021599 81 G 81 (310)
Q Consensus 81 ~ 81 (310)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.36 E-value=9.9e-13 Score=119.11 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=70.5
Q ss_pred CCCCcEEEEccCCCCC-cHHHHHHHHHhcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 7 RYGGTRLYVGRLASRT-RSRDLEEIFSRYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~~-te~dL~~~F~~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
....++|||+|||..+ ++++|+++|..||.|..|.|+. +||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3467899999999995 9999999999999999999864 4999999999999999999999999999999999
Q ss_pred ccCCC
Q 021599 79 ARGGP 83 (310)
Q Consensus 79 ak~~~ 83 (310)
+.+..
T Consensus 261 a~~~~ 265 (284)
T 3smz_A 261 CAPGP 265 (284)
T ss_dssp CCSSS
T ss_pred ecCCC
Confidence 98653
No 197
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.5e-12 Score=102.51 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=67.8
Q ss_pred CCCCcEEEEccCCCC-CcHHHHHHHHHhcCCeeEEEEeCC--eEEEEECC-HHHHHHHHHhcC--CcccCCCceeeeecc
Q 021599 7 RYGGTRLYVGRLASR-TRSRDLEEIFSRYGRIRDVDMKRD--FAFVEFSD-PRDADDARYSLN--GRDVDGSRIIVEFAR 80 (310)
Q Consensus 7 ~~~~~~l~V~nL~~~-~te~dL~~~F~~~G~V~~v~i~~~--~afV~F~~-~eda~~Ai~~ln--g~~l~Gr~I~V~~ak 80 (310)
-..++.|||+||+.. +++++|+++|.+||+|.+|+|..+ +|||.|.+ .++|+.||..|| +.+|.|..++|++..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 357899999999999 999999999999999999999887 99999999 899999999994 788999999988764
No 198
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.34 E-value=1.5e-12 Score=121.73 Aligned_cols=74 Identities=20% Similarity=0.456 Sum_probs=64.0
Q ss_pred CCCCcEEEEcc--CCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCHHHHHHHHHhcCCcccC---CC--ceeee
Q 021599 7 RYGGTRLYVGR--LASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDPRDADDARYSLNGRDVD---GS--RIIVE 77 (310)
Q Consensus 7 ~~~~~~l~V~n--L~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~~eda~~Ai~~lng~~l~---Gr--~I~V~ 77 (310)
..++.+|||+| |+..+++++|+++|++||+|..|.|. ++||||+|.+.++|++||+.|||.++. |+ .|.|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 45678999999 57899999999999999999999885 579999999999999999999999883 44 46666
Q ss_pred ecc
Q 021599 78 FAR 80 (310)
Q Consensus 78 ~ak 80 (310)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 663
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.34 E-value=4.1e-13 Score=104.55 Aligned_cols=66 Identities=24% Similarity=0.441 Sum_probs=57.3
Q ss_pred EEccCCCCCcHHHHHHHH------------HhcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCCcccCCCce
Q 021599 14 YVGRLASRTRSRDLEEIF------------SRYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRI 74 (310)
Q Consensus 14 ~V~nL~~~~te~dL~~~F------------~~~G~V~~v~i~-------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I 74 (310)
++.||++.+++++|+++| ++||+|..|.|+ +|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 356777777887777666 999999999997 4599999999999999999999999999999
Q ss_pred eeeec
Q 021599 75 IVEFA 79 (310)
Q Consensus 75 ~V~~a 79 (310)
.|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.33 E-value=2.1e-12 Score=117.37 Aligned_cols=76 Identities=14% Similarity=0.347 Sum_probs=69.5
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcC-CeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYG-RIRDVDMK-------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G-~V~~v~i~-------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
..++|||+|||..+++++|+++|.+|| .|..|.|+ ++||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 568999999999999999999999999 99999985 4699999999999999999999999999999999998
Q ss_pred CCCC
Q 021599 81 GGPR 84 (310)
Q Consensus 81 ~~~~ 84 (310)
+...
T Consensus 196 ~~~~ 199 (292)
T 2ghp_A 196 PLEK 199 (292)
T ss_dssp CC--
T ss_pred CCcc
Confidence 6543
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.32 E-value=2.4e-12 Score=100.33 Aligned_cols=73 Identities=19% Similarity=0.351 Sum_probs=63.5
Q ss_pred CCCcEEEEccC--CCCC--------cHHHHHHHHHhcCCeeEEEEe----------CCeEEEEECCHHHHHHHHHhcCCc
Q 021599 8 YGGTRLYVGRL--ASRT--------RSRDLEEIFSRYGRIRDVDMK----------RDFAFVEFSDPRDADDARYSLNGR 67 (310)
Q Consensus 8 ~~~~~l~V~nL--~~~~--------te~dL~~~F~~~G~V~~v~i~----------~~~afV~F~~~eda~~Ai~~lng~ 67 (310)
.++..|+|.|| +..+ .++||+++|++||+|+.|.|+ ++||||+|.+.++|++||+.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45778899998 3333 347899999999999999985 369999999999999999999999
Q ss_pred ccCCCceeeeecc
Q 021599 68 DVDGSRIIVEFAR 80 (310)
Q Consensus 68 ~l~Gr~I~V~~ak 80 (310)
.|+|+.|.|.++.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999875
No 202
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.32 E-value=3.7e-12 Score=115.31 Aligned_cols=76 Identities=18% Similarity=0.351 Sum_probs=69.9
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--------CeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--------DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--------~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
...++|||+|||..+++++|+++|.+||.|..|.|+. +||||+|.+.++|..||..|+|..|+|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3568999999999999999999999999999998863 39999999999999999999999999999999999
Q ss_pred cCCC
Q 021599 80 RGGP 83 (310)
Q Consensus 80 k~~~ 83 (310)
.+..
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 7643
No 203
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.29 E-value=5.4e-12 Score=113.44 Aligned_cols=74 Identities=24% Similarity=0.231 Sum_probs=65.8
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe-------CCeEEEEECCHHHHHHHHHhcCC-cccC---CCceeee
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK-------RDFAFVEFSDPRDADDARYSLNG-RDVD---GSRIIVE 77 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~-------~~~afV~F~~~eda~~Ai~~lng-~~l~---Gr~I~V~ 77 (310)
.+++|||+||+..+++++|+++|.+||.|..|.|+ ++||||+|.+.++|..||..||+ ..+. ++.|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 46899999999999999999999999999999986 45999999999999999999954 4444 8999999
Q ss_pred eccCC
Q 021599 78 FARGG 82 (310)
Q Consensus 78 ~ak~~ 82 (310)
++...
T Consensus 175 ~~~~~ 179 (261)
T 3sde_A 175 PMEQF 179 (261)
T ss_dssp ECCCE
T ss_pred ecccc
Confidence 98754
No 204
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=93.17 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=63.6
Q ss_pred CCCcEEEEccCCC----CCcH----HHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeec
Q 021599 8 YGGTRLYVGRLAS----RTRS----RDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 79 (310)
Q Consensus 8 ~~~~~l~V~nL~~----~~te----~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~a 79 (310)
++..||+|..++. ++-. .+|.+.|.+||+|..++|+.+.+||+|.+.++|.+||+ |||..|+|+.|+|+++
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 3456777776652 2322 56899999999999999999999999999999999997 9999999999999999
Q ss_pred cCCC
Q 021599 80 RGGP 83 (310)
Q Consensus 80 k~~~ 83 (310)
++..
T Consensus 84 t~dW 87 (91)
T 2dnr_A 84 SPSG 87 (91)
T ss_dssp CCSS
T ss_pred CCCc
Confidence 8653
No 205
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.27 E-value=1e-11 Score=98.90 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=63.9
Q ss_pred CCCcEEEEccCCC--C---CcHHHHHHHHHhcCCeeEEEEeC------------CeEEEEECCHHHHHHHHHhcCCcccC
Q 021599 8 YGGTRLYVGRLAS--R---TRSRDLEEIFSRYGRIRDVDMKR------------DFAFVEFSDPRDADDARYSLNGRDVD 70 (310)
Q Consensus 8 ~~~~~l~V~nL~~--~---~te~dL~~~F~~~G~V~~v~i~~------------~~afV~F~~~eda~~Ai~~lng~~l~ 70 (310)
.++.+|+|.||-. + -.++||+++|++||+|..|.|+. +||||+|.+.++|.+||+.|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3678999999842 2 24689999999999999998852 58999999999999999999999999
Q ss_pred CCceeeeecc
Q 021599 71 GSRIIVEFAR 80 (310)
Q Consensus 71 Gr~I~V~~ak 80 (310)
|+.|.|.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999975
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.18 E-value=5.3e-11 Score=94.11 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=62.2
Q ss_pred CCCcEEEEccCCCCC----------cHHHHHHHHHhcCCeeEEEEeC----CeEEEEECCHHHHHHHHHhcCCcccCCCc
Q 021599 8 YGGTRLYVGRLASRT----------RSRDLEEIFSRYGRIRDVDMKR----DFAFVEFSDPRDADDARYSLNGRDVDGSR 73 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~----------te~dL~~~F~~~G~V~~v~i~~----~~afV~F~~~eda~~Ai~~lng~~l~Gr~ 73 (310)
.++..|.|.||=... .++||+++|++||+|+.|.|.+ |||||+|.+.++|++||+.|||.+|+|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 356678888883211 2357899999999999999964 79999999999999999999999999999
Q ss_pred eeeeecc
Q 021599 74 IIVEFAR 80 (310)
Q Consensus 74 I~V~~ak 80 (310)
|.|+++.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999985
No 207
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=99.14 E-value=5.5e-12 Score=104.22 Aligned_cols=120 Identities=25% Similarity=0.476 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCCeeEEEEeCCeEEEEECC--------HHHHHHHHHhcC--Cc--ccCCCceeeeeccCCCC-------C
Q 021599 25 RDLEEIFSRYGRIRDVDMKRDFAFVEFSD--------PRDADDARYSLN--GR--DVDGSRIIVEFARGGPR-------G 85 (310)
Q Consensus 25 ~dL~~~F~~~G~V~~v~i~~~~afV~F~~--------~eda~~Ai~~ln--g~--~l~Gr~I~V~~ak~~~~-------~ 85 (310)
+||.++|...|.|++++..++|+||+..+ .+|+-..+..|. |+ ...|..|..++...... .
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~l~eG~~V~f~~~~g~kG~~A~~V~~ 81 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTG 81 (148)
T ss_dssp ----CCEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCCCCTTCEEEEEEEEETTEEEEEEEES
T ss_pred CcccccccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCccCCCCCEEEEEEEEccccchhhcccc
Confidence 56778888999999999999999999762 233322233332 22 22566666555432210 0
Q ss_pred CCCCCCccCCCCCCCCCCCccCCCCCCCCccCCCCCCCcccccCCCCCcccccCCCCCc
Q 021599 86 PGGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPK 144 (310)
Q Consensus 86 ~~g~~~~~grg~~~~~~rc~~~G~~g~~~rdc~~~~~~~~~~~cg~~~h~~~~~~~~~r 144 (310)
.++....+....+.+...||+||..||++++|+.......||.|+..+|+.++|+....
T Consensus 82 pgg~pv~GS~rrp~~~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~~r~Cp~~~~ 140 (148)
T 3ts2_A 82 PGGVFCIGSERRPKGGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSINHMVASCPLKAQ 140 (148)
T ss_dssp GGGCCCCCCTTSCCCSCCCTTTCCSSCCGGGCCSCCCCCCCTTTCCSSCCGGGCTTTTC
T ss_pred cCCccccccccccCCCCcccEeCCccchhhhCCCCCCCCcccccCCcCCEeccCcCCCC
Confidence 01111111112233457899999999999999987777899999999999999997653
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.7e-10 Score=87.19 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=62.1
Q ss_pred CCCcEEEEccCCCC-----CcH----HHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 8 YGGTRLYVGRLASR-----TRS----RDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 8 ~~~~~l~V~nL~~~-----~te----~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
++..||+|..++.. +-. .+|.+.|.+||+|..++|+.+-+||+|.+.++|.+||+ |||.+|+|+.|+|.+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEEEEC
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEec
Confidence 45678888877643 211 46899999999999999999999999999999999997 999999999999998
Q ss_pred cc
Q 021599 79 AR 80 (310)
Q Consensus 79 ak 80 (310)
..
T Consensus 92 k~ 93 (95)
T 1ufw_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.61 E-value=5.7e-08 Score=84.81 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=53.9
Q ss_pred CcHHHHHHHHHhcCCeeEEEEe------------CCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 22 TRSRDLEEIFSRYGRIRDVDMK------------RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 22 ~te~dL~~~F~~~G~V~~v~i~------------~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
-.+++|.+.|.+||+|..|.|+ +|++||+|.+.++|.+||+.|||.+|+|+.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3567899999999999999985 2499999999999999999999999999999999875
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.55 E-value=2.8e-07 Score=71.08 Aligned_cols=73 Identities=19% Similarity=0.174 Sum_probs=66.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhc-----CCeeEEEEeCC--eEEEEECCHHHHHHHHHhcCCcccCCCceeeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRY-----GRIRDVDMKRD--FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~-----G~V~~v~i~~~--~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ 78 (310)
.++...+|-|-|||..++...|+.|++.+ |.|+.|.+..+ -|+|+|.+...|.+|.-.|||.+|+|++|.|.-
T Consensus 17 ~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 17 SKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 34557889999999999999999999999 99999999865 899999999999999999999999999998854
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.15 E-value=3.5e-06 Score=64.57 Aligned_cols=73 Identities=22% Similarity=0.346 Sum_probs=63.2
Q ss_pred CCcEEEEccCCCCC-c----HHHHHHHHHhcCCeeEEEEeCC--eEEEEECCHHHHHHHHHhcCCcccCCCceeeeeccC
Q 021599 9 GGTRLYVGRLASRT-R----SRDLEEIFSRYGRIRDVDMKRD--FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 81 (310)
Q Consensus 9 ~~~~l~V~nL~~~~-t----e~dL~~~F~~~G~V~~v~i~~~--~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak~ 81 (310)
.-++|+|+||+.++ . .+.++++|..|+++....+.+. -..|.|.+.++|..|-..||+..|+|..|+|-++.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 35789999998766 2 2567899999999888888776 568999999999999999999999999999999874
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=2.6e-05 Score=59.51 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=62.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhc-----CCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRY-----GRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~-----G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
....+|.|.|||+.+.++.|.-+|+.- |+|..|....+-|+|+|.+.+.|+..|+. ..+.|.+..|.|....
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 457899999999999999999999872 58999998889999999999999999844 4588889999887654
No 213
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=98.01 E-value=9.6e-06 Score=53.81 Aligned_cols=42 Identities=40% Similarity=1.047 Sum_probs=36.6
Q ss_pred CCCCCccCCCCCCCCccCCCCCCCcccccCCCCCcccccCCCC
Q 021599 100 GSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142 (310)
Q Consensus 100 ~~~rc~~~G~~g~~~rdc~~~~~~~~~~~cg~~~h~~~~~~~~ 142 (310)
....||+||..||++.+|+.. ....||.||..+|++++|+..
T Consensus 5 r~~~C~~Cg~~GH~a~~C~~~-~~~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 5 KVIRCWNCGKEGHSARQCRAP-RRQGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CCCBCTTTCCBTCCTTTCCCS-SCCSCSSSCCSSCCGGGCCSS
T ss_pred CcCeeeecCCCCcChhhCcCC-CCCeeCcCCCcCCccCCCcCC
Confidence 346799999999999999986 356899999999999999864
No 214
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=1.8e-05 Score=55.37 Aligned_cols=42 Identities=33% Similarity=0.716 Sum_probs=38.2
Q ss_pred CCCccCCCCCCCCccCCCCCCCcccccCCCCCcccccCCCCC
Q 021599 102 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP 143 (310)
Q Consensus 102 ~rc~~~G~~g~~~rdc~~~~~~~~~~~cg~~~h~~~~~~~~~ 143 (310)
..||+|+..||++.+|+.......||.|++.+|++++|+...
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSCCCSSCCTTTCCSSSCTTTCTGGG
T ss_pred CcccccCCCCcChhhCCCCCCCCccCCcCCcCCccCcCCCcc
Confidence 579999999999999998767789999999999999998754
No 215
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.93 E-value=9.8e-06 Score=58.58 Aligned_cols=44 Identities=32% Similarity=0.678 Sum_probs=38.7
Q ss_pred CCCCCccCCCCCCCCccCCCCCCCcccccCCCCCcccccCCCCC
Q 021599 100 GSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP 143 (310)
Q Consensus 100 ~~~rc~~~G~~g~~~rdc~~~~~~~~~~~cg~~~h~~~~~~~~~ 143 (310)
....||+||..|||+.+|+.......||.||+.+|++++|+...
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar~Cp~~~ 66 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKA 66 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSSCCCCCCCTTTCCTTSCGGGCTTGG
T ss_pred CCCcccccCCcCcCcccCCCCCCCCccCCcCCcCCccCcCcCCc
Confidence 34679999999999999998766789999999999999998643
No 216
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.89 E-value=1.1e-05 Score=50.81 Aligned_cols=38 Identities=39% Similarity=0.970 Sum_probs=33.8
Q ss_pred CCccCCCCCCCCccCCCCCCCcccccCCCCCcccccCCC
Q 021599 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN 141 (310)
Q Consensus 103 rc~~~G~~g~~~rdc~~~~~~~~~~~cg~~~h~~~~~~~ 141 (310)
.||+||..||++.+|+.. ....|+.||..+|++++|+.
T Consensus 2 ~C~~Cg~~GH~a~~C~~~-~~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP-RQEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC-CCSSCTTTCCSSSCTTTSCC
T ss_pred eeeccCCCCcccccCCCC-CCCccccCCCCCCccCcCcC
Confidence 599999999999999975 35789999999999999863
No 217
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.89 E-value=1.4e-05 Score=55.62 Aligned_cols=43 Identities=28% Similarity=0.842 Sum_probs=37.1
Q ss_pred CCCCccCCCCCCCCccCCCCCC----CcccccCCCCCcccccCCCCC
Q 021599 101 SGRCFNCGIDGHWARDCKAGDW----KNKCYRCGERGHIERNCQNSP 143 (310)
Q Consensus 101 ~~rc~~~G~~g~~~rdc~~~~~----~~~~~~cg~~~h~~~~~~~~~ 143 (310)
...||+|+..|||+.+|+.... ...||.|++.+|++++|+...
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTTSSSCCCSBCTTTCCBSSCGGGCCCCC
T ss_pred CCcccccCCCCeehhhCcCCcCCCCCCCeeCCCCCCCCCcCCCcCCC
Confidence 4579999999999999998643 367999999999999998754
No 218
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=97.85 E-value=6.7e-06 Score=56.95 Aligned_cols=42 Identities=33% Similarity=0.892 Sum_probs=19.0
Q ss_pred CCCccCCCCCCCCccCCCCC-------CCcccccCCCCCcccccCCCCC
Q 021599 102 GRCFNCGIDGHWARDCKAGD-------WKNKCYRCGERGHIERNCQNSP 143 (310)
Q Consensus 102 ~rc~~~G~~g~~~rdc~~~~-------~~~~~~~cg~~~h~~~~~~~~~ 143 (310)
..||+|+..|||+++|+... ....||.|++.+|++++|+...
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp ---------------------------CCCSCSSCSSCSSCSTTCCCTT
T ss_pred CccccCCCCCcCHhhCcCCCCCccccCCCcceeECCCCCCccCcCCCcc
Confidence 36999999999999999764 3578999999999999998754
No 219
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.82 E-value=3.8e-05 Score=57.71 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=54.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC----------eEEEEECCHHHHHHHHHhcCCcccCC
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD----------FAFVEFSDPRDADDARYSLNGRDVDG 71 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~----------~afV~F~~~eda~~Ai~~lng~~l~G 71 (310)
++|.|.+||+.+||+++.+.+..+.++.+...+.| -|||.|.+.+++....+.++|+.|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 68999999999999999999999988888777544 79999999999999999999998754
No 220
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.80 E-value=1.9e-05 Score=49.10 Aligned_cols=36 Identities=36% Similarity=1.155 Sum_probs=32.7
Q ss_pred CCccCCCCCCCCccCCCCCCCcccccCCCCCcccccCCC
Q 021599 103 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN 141 (310)
Q Consensus 103 rc~~~G~~g~~~rdc~~~~~~~~~~~cg~~~h~~~~~~~ 141 (310)
.||+||..||++.+|+.. ..|+.|+..+|++++|++
T Consensus 2 ~C~~Cg~~GH~~~~C~~~---~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP---KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB---TTCSSCCCTTGGGGTTCC
T ss_pred cccccCCCCcchhhCcCc---CeEccCCCcCCccCcCcC
Confidence 599999999999999975 689999999999999863
No 221
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.76 E-value=2.6e-05 Score=52.93 Aligned_cols=41 Identities=41% Similarity=1.138 Sum_probs=36.1
Q ss_pred CCCCccCCCCCCCCccCCCCCCCcccccCCCCCcccccCCCC
Q 021599 101 SGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142 (310)
Q Consensus 101 ~~rc~~~G~~g~~~rdc~~~~~~~~~~~cg~~~h~~~~~~~~ 142 (310)
...||+||..||++.+|+.. ....||.||+.+|++++|+..
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~~-~~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRAP-RKKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSSC-SCCBCTTTCCBSSCGGGCSSS
T ss_pred CcceeeeCCCCcChhhcCCC-CCCEeCCCCCcCCccCCCcCc
Confidence 46799999999999999875 356899999999999999864
No 222
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.65 E-value=0.00015 Score=57.01 Aligned_cols=71 Identities=21% Similarity=0.227 Sum_probs=56.6
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhcCCcccCC-Cceeeee
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSLNGRDVDG-SRIIVEF 78 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--~~afV~F~~~eda~~Ai~~lng~~l~G-r~I~V~~ 78 (310)
+....+-|.|-+.++.. ...|..+|.+||+|.+..... ++-.|.|.+..+|++|| ..||..|+| ..|-|..
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 34557889999999875 566778899999999988843 59999999999999999 669999986 4444544
No 223
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.41 E-value=0.00051 Score=51.81 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=45.3
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcC
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLN 65 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~ln 65 (310)
..+....||+-++|.++...||.++|..||.|.--.|--.-|||.|.+.+.|..||..|.
T Consensus 11 ~~p~r~HVf~l~FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 11 LQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCCSEEEEECCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 344444444449999999999999999999443222334499999999999999997663
No 224
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.33 E-value=0.00017 Score=54.56 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=56.2
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC----------eEEEEECCHHHHHHHHHhcCCcccCCCc----
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD----------FAFVEFSDPRDADDARYSLNGRDVDGSR---- 73 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~----------~afV~F~~~eda~~Ai~~lng~~l~Gr~---- 73 (310)
...-+|.|..||+.+||+++.+.+..+=++.+...+.| -|||.|.+.+++....+.++|..|.+.+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 45678999999999999998877776555554444333 7899999999999999999999875432
Q ss_pred -eeeeecc
Q 021599 74 -IIVEFAR 80 (310)
Q Consensus 74 -I~V~~ak 80 (310)
..|++|-
T Consensus 87 ~a~VE~AP 94 (97)
T 2l08_A 87 PAVVEFAP 94 (97)
T ss_dssp EEEEEECC
T ss_pred eeEEEecC
Confidence 3466653
No 225
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.20 E-value=0.00044 Score=52.33 Aligned_cols=53 Identities=26% Similarity=0.383 Sum_probs=43.2
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC-eEEEEECCHHHHHHHHHhcC
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD-FAFVEFSDPRDADDARYSLN 65 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~-~afV~F~~~eda~~Ai~~ln 65 (310)
..|+| ++|.++...||.++|..||. ..|..+.+ -|||.|.+.+.|..||..|.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 34556 99999999999999999993 34444444 99999999999999998664
No 226
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.04 E-value=0.00054 Score=54.54 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=53.0
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeE-EEE---------------------eCCeEEEEECCHHHHHHHHHhcC
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRD-VDM---------------------KRDFAFVEFSDPRDADDARYSLN 65 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~-v~i---------------------~~~~afV~F~~~eda~~Ai~~ln 65 (310)
...+-|.|-+.|+...+. |.++|++||.|.+ +.+ -.++..|+|.+..+|.+|| ..|
T Consensus 5 ~~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LEN 82 (132)
T ss_dssp ---CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTT
T ss_pred cCceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhC
Confidence 345778888898776655 5568999999876 211 1247899999999999999 669
Q ss_pred CcccCCCceeeeecc
Q 021599 66 GRDVDGSRIIVEFAR 80 (310)
Q Consensus 66 g~~l~Gr~I~V~~ak 80 (310)
|..|.|..|-|....
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999877776653
No 227
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00044 Score=50.91 Aligned_cols=39 Identities=23% Similarity=0.441 Sum_probs=21.2
Q ss_pred CccCCCCCCCCccCCCCCCCcccccCCCCCcccccCCCC
Q 021599 104 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142 (310)
Q Consensus 104 c~~~G~~g~~~rdc~~~~~~~~~~~cg~~~h~~~~~~~~ 142 (310)
||+|+..+|++++|........||.||..||+..+|+..
T Consensus 27 cY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 27 AYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp CCCBC-------------CCCBCSSSSCBSSCGGGCSSC
T ss_pred ccccccCCcccccccCCCCCCeecccCCCCcCcccCCcc
Confidence 455555555555554444567899999999999999874
No 228
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=96.78 E-value=0.0014 Score=41.29 Aligned_cols=25 Identities=32% Similarity=0.809 Sum_probs=20.4
Q ss_pred CCCCCCCCccCCCCCCCCccCCCCC
Q 021599 97 PPPGSGRCFNCGIDGHWARDCKAGD 121 (310)
Q Consensus 97 ~~~~~~rc~~~G~~g~~~rdc~~~~ 121 (310)
++.....||+||..|||+.+|+...
T Consensus 6 ~~~~~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 6 SQLDRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp CSCCSSSCSSSCCTTCCTTSCSSSC
T ss_pred CCCCCCeeeECCCCCcchhhCcCCc
Confidence 4445678999999999999999765
No 229
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0036 Score=49.38 Aligned_cols=42 Identities=24% Similarity=0.503 Sum_probs=35.1
Q ss_pred CCCccCCCCCCCCccCCCCCCCcccccCCCCCcccccCCCCC
Q 021599 102 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP 143 (310)
Q Consensus 102 ~rc~~~G~~g~~~rdc~~~~~~~~~~~cg~~~h~~~~~~~~~ 143 (310)
..||+|+..||++.+|+.......|+.|+..+|++.+|+...
T Consensus 43 ~~C~~Cg~~GH~~~~C~~~~~~~~C~~Cg~~GH~~~~Cp~~~ 84 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERCPSIW 84 (124)
T ss_dssp SCSSSSSCSSSSTTTSCCCCCCCSSSSSCSSCCCTTTCCCST
T ss_pred ccccccCCCCCccccCcCcccCccCCCCCcCCcchhhCCCcc
Confidence 468999999999999988766678999999999999988643
No 230
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=96.22 E-value=0.0035 Score=42.48 Aligned_cols=25 Identities=32% Similarity=0.809 Sum_probs=19.7
Q ss_pred CCCCCCCCccCCCCCCCCccCCCCC
Q 021599 97 PPPGSGRCFNCGIDGHWARDCKAGD 121 (310)
Q Consensus 97 ~~~~~~rc~~~G~~g~~~rdc~~~~ 121 (310)
.......||+||..|||+++|+...
T Consensus 19 ~~~~~~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 19 SQLDRDQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TTCCTTBCSSSCCBSSCGGGCTTCC
T ss_pred CCCCCCcceeCCCCCcccccCcCCc
Confidence 3445678999999999999998754
No 231
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=96.17 E-value=0.0028 Score=35.93 Aligned_cols=19 Identities=53% Similarity=1.148 Sum_probs=16.1
Q ss_pred CCCccCCCCCCCCccCCCC
Q 021599 102 GRCFNCGIDGHWARDCKAG 120 (310)
Q Consensus 102 ~rc~~~G~~g~~~rdc~~~ 120 (310)
..||+||..|||+++|+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 4699999999999998864
No 232
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0057 Score=48.26 Aligned_cols=41 Identities=27% Similarity=0.650 Sum_probs=35.0
Q ss_pred CCCCccCCCCCCCCccCCCCC-------------------CCcccccCCCCCcccccCCC
Q 021599 101 SGRCFNCGIDGHWARDCKAGD-------------------WKNKCYRCGERGHIERNCQN 141 (310)
Q Consensus 101 ~~rc~~~G~~g~~~rdc~~~~-------------------~~~~~~~cg~~~h~~~~~~~ 141 (310)
...||+|+..||++.+|+... ....||.||+.+|++.+|+.
T Consensus 64 ~~~C~~Cg~~GH~~~~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 64 KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCSSSSSCSSCCCTTTCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCTTTTTSCC
T ss_pred CccCCCCCcCCcchhhCCCccccccccCccccccccccCCCCCCcCCCCCCCcCcccCcC
Confidence 367999999999999999642 24689999999999999975
No 233
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.97 E-value=0.0037 Score=60.25 Aligned_cols=51 Identities=14% Similarity=0.284 Sum_probs=39.4
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC---eEEEEECCHHHHHHHHH
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARY 62 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~---~afV~F~~~eda~~Ai~ 62 (310)
..|||. ++..+++.+|.++|.+||.|..+.+-+. ||+|||.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 679997 7889999999999999999999888654 99999999999987763
No 234
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=95.25 E-value=0.013 Score=33.95 Aligned_cols=20 Identities=55% Similarity=1.150 Sum_probs=15.9
Q ss_pred CCCCccCCCCCCCCccCCCC
Q 021599 101 SGRCFNCGIDGHWARDCKAG 120 (310)
Q Consensus 101 ~~rc~~~G~~g~~~rdc~~~ 120 (310)
...||+||..||++++|+..
T Consensus 6 ~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred CCEEEECCccccCHhHCccc
Confidence 35688888888888888764
No 235
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=95.00 E-value=0.074 Score=37.74 Aligned_cols=68 Identities=16% Similarity=0.269 Sum_probs=47.3
Q ss_pred EEEEccC-CCCCcHHHHHHHHHhcC-----CeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 12 RLYVGRL-ASRTRSRDLEEIFSRYG-----RIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 12 ~l~V~nL-~~~~te~dL~~~F~~~G-----~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
+|||..- ...+...+|..+|..-+ .|-.|+|...|.||+... +.+..++..|++..+.|+.|.|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 5666422 34567788888887544 467888888899999887 45788889999999999999998764
No 236
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.44 E-value=0.0098 Score=47.92 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=34.4
Q ss_pred eCCeEEEEECCHHHHHHHHHhc-CCcccCCCceeeeeccC
Q 021599 43 KRDFAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFARG 81 (310)
Q Consensus 43 ~~~~afV~F~~~eda~~Ai~~l-ng~~l~Gr~I~V~~ak~ 81 (310)
++|+++|+|.+.++|++||+.| ||.+|+| .|.|.++..
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3569999999999999999999 9999999 999998864
No 237
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=94.14 E-value=0.24 Score=36.56 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=51.5
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcC
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLN 65 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~ln 65 (310)
..+|-|-|-|||..+-..++.-.....|---+|+.+-|.|+|.|.+.++...||.+|-
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHHE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHHH
Confidence 4578899999999999888888888899888999999999999999999999998663
No 238
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.12 E-value=0.029 Score=37.70 Aligned_cols=20 Identities=35% Similarity=1.049 Sum_probs=17.0
Q ss_pred CCCCccCCCCCCCCccCCCC
Q 021599 101 SGRCFNCGIDGHWARDCKAG 120 (310)
Q Consensus 101 ~~rc~~~G~~g~~~rdc~~~ 120 (310)
...||.||..|||.++|+..
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 44699999999999999843
No 239
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=93.84 E-value=0.028 Score=40.22 Aligned_cols=33 Identities=24% Similarity=0.602 Sum_probs=19.2
Q ss_pred CCCCCccCCCC---------CCCcccccCCCCCcccccCCCC
Q 021599 110 DGHWARDCKAG---------DWKNKCYRCGERGHIERNCQNS 142 (310)
Q Consensus 110 ~g~~~rdc~~~---------~~~~~~~~cg~~~h~~~~~~~~ 142 (310)
.|||++||+.. .....||.||+.+|+.++|+..
T Consensus 2 ~gh~~rdc~~~~~~~~~~~~~r~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 2 SGLVPRGSHMPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp ----------CCCCCCCSCCSTTSCCTTTCCSSSCTTTCSSC
T ss_pred CccccCcCCCCCcCccccccCCCCcccccCCcCcCcccCCCC
Confidence 47888888864 3457899999999999999864
No 240
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=93.79 E-value=0.027 Score=41.22 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=22.5
Q ss_pred CCCccCCCCCCCCccCCCCCCCcccccCCCCCcccccCCCC
Q 021599 102 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 142 (310)
Q Consensus 102 ~rc~~~G~~g~~~rdc~~~~~~~~~~~cg~~~h~~~~~~~~ 142 (310)
..||+|+..||++.+|+..- .||.|+..+|+.++|...
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~~---rcY~c~~~gh~~~~c~~p 43 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSIW---RAYILVDDNEKAKPKVLP 43 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGGT---CCCCBC------------
T ss_pred CCCCCCCCCCCccccCCCcc---cccccccCCcccccccCC
Confidence 46999999999999998743 699999999998887654
No 241
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=91.90 E-value=0.053 Score=43.73 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=21.8
Q ss_pred CCeEEEEECCHHHHHHHHHhcCCcc
Q 021599 44 RDFAFVEFSDPRDADDARYSLNGRD 68 (310)
Q Consensus 44 ~~~afV~F~~~eda~~Ai~~lng~~ 68 (310)
+|||||+|.+.++|++||..+++..
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhcccC
Confidence 4699999999999999998887643
No 242
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=91.75 E-value=0.13 Score=32.16 Aligned_cols=22 Identities=32% Similarity=1.041 Sum_probs=19.5
Q ss_pred CcccccCCCCCcccccCCCCCc
Q 021599 123 KNKCYRCGERGHIERNCQNSPK 144 (310)
Q Consensus 123 ~~~~~~cg~~~h~~~~~~~~~r 144 (310)
...||.||+.+|++++|+....
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCC
T ss_pred CCeeeECCCCCcchhhCcCCcc
Confidence 5799999999999999998654
No 243
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=91.33 E-value=0.13 Score=34.60 Aligned_cols=23 Identities=30% Similarity=0.921 Sum_probs=19.9
Q ss_pred CCcccccCCCCCcccccCCCCCc
Q 021599 122 WKNKCYRCGERGHIERNCQNSPK 144 (310)
Q Consensus 122 ~~~~~~~cg~~~h~~~~~~~~~r 144 (310)
....||.||+.||+.++|+...+
T Consensus 22 ~~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 22 DRDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp CTTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCCcceeCCCCCcccccCcCCcc
Confidence 36789999999999999998654
No 244
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=90.30 E-value=0.17 Score=28.36 Aligned_cols=19 Identities=42% Similarity=1.256 Sum_probs=17.0
Q ss_pred cccccCCCCCcccccCCCC
Q 021599 124 NKCYRCGERGHIERNCQNS 142 (310)
Q Consensus 124 ~~~~~cg~~~h~~~~~~~~ 142 (310)
..||.||+.+|++++|+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 5799999999999999864
No 245
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.77 E-value=0.64 Score=45.21 Aligned_cols=54 Identities=26% Similarity=0.341 Sum_probs=43.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcC
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLN 65 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~ln 65 (310)
..|+|+ ++..+...+|.++|..||.|.-..|-...|||.|.+.+.|..++..+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHH
Confidence 456665 888999999999999999653333334489999999999999998875
No 246
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=88.86 E-value=0.3 Score=33.02 Aligned_cols=21 Identities=38% Similarity=0.953 Sum_probs=18.6
Q ss_pred CCCCccCCCCCCCCccCCCCC
Q 021599 101 SGRCFNCGIDGHWARDCKAGD 121 (310)
Q Consensus 101 ~~rc~~~G~~g~~~rdc~~~~ 121 (310)
...||+||..|||+++|+...
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCTT
T ss_pred CcceeECCCCCCccCcCCCcc
Confidence 467999999999999999764
No 247
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=88.19 E-value=0.39 Score=27.52 Aligned_cols=20 Identities=35% Similarity=1.051 Sum_probs=17.6
Q ss_pred CcccccCCCCCcccccCCCC
Q 021599 123 KNKCYRCGERGHIERNCQNS 142 (310)
Q Consensus 123 ~~~~~~cg~~~h~~~~~~~~ 142 (310)
...||.||+.+|++.+|+..
T Consensus 6 ~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred CCEEEECCccccCHhHCccc
Confidence 46899999999999999764
No 248
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.25 E-value=0.52 Score=32.28 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=18.5
Q ss_pred CCCCccCCCCCCCCccCCCCC
Q 021599 101 SGRCFNCGIDGHWARDCKAGD 121 (310)
Q Consensus 101 ~~rc~~~G~~g~~~rdc~~~~ 121 (310)
...||+|+..||++++|+...
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGGG
T ss_pred CCccCCcCCcCCccCcCCCcc
Confidence 467999999999999999764
No 249
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=85.32 E-value=0.48 Score=29.05 Aligned_cols=19 Identities=32% Similarity=0.810 Sum_probs=16.6
Q ss_pred CCCCccCCCCCCCCccCCC
Q 021599 101 SGRCFNCGIDGHWARDCKA 119 (310)
Q Consensus 101 ~~rc~~~G~~g~~~rdc~~ 119 (310)
...||+||..||++++|++
T Consensus 21 ~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 21 QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CSSCTTTCCSSSCTTTSCC
T ss_pred CCccccCCCCCCccCcCcC
Confidence 3579999999999999974
No 250
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=85.16 E-value=0.47 Score=32.24 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=18.5
Q ss_pred CCCCccCCCCCCCCccCCCCC
Q 021599 101 SGRCFNCGIDGHWARDCKAGD 121 (310)
Q Consensus 101 ~~rc~~~G~~g~~~rdc~~~~ 121 (310)
...||+|+..||++++|+...
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC
T ss_pred CCeeCCCCCCCCCcCCCcCCC
Confidence 467999999999999999764
No 251
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=83.41 E-value=0.47 Score=28.73 Aligned_cols=18 Identities=33% Similarity=1.114 Sum_probs=16.1
Q ss_pred CCCccCCCCCCCCccCCC
Q 021599 102 GRCFNCGIDGHWARDCKA 119 (310)
Q Consensus 102 ~rc~~~G~~g~~~rdc~~ 119 (310)
..||+||..||++++|++
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 579999999999999974
No 252
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=81.98 E-value=0.84 Score=29.49 Aligned_cols=19 Identities=32% Similarity=0.859 Sum_probs=17.1
Q ss_pred CCCccCCCCCCCCccCCCC
Q 021599 102 GRCFNCGIDGHWARDCKAG 120 (310)
Q Consensus 102 ~rc~~~G~~g~~~rdc~~~ 120 (310)
..||+||..||++++|+..
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSS
T ss_pred CeeCcCCCcCCccCCCcCC
Confidence 5799999999999999864
No 253
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=80.76 E-value=0.93 Score=29.92 Aligned_cols=20 Identities=35% Similarity=0.996 Sum_probs=17.6
Q ss_pred CCCCccCCCCCCCCccCCCC
Q 021599 101 SGRCFNCGIDGHWARDCKAG 120 (310)
Q Consensus 101 ~~rc~~~G~~g~~~rdc~~~ 120 (310)
...||+||..||++.+|+..
T Consensus 33 ~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 33 KKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CCBCTTTCCBSSCGGGCSSS
T ss_pred CCEeCCCCCcCCccCCCcCc
Confidence 35799999999999999864
No 254
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=77.99 E-value=4.1 Score=30.46 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=46.6
Q ss_pred cCCCCCcHHHHHHHH-HhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 17 RLASRTRSRDLEEIF-SRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 17 nL~~~~te~dL~~~F-~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
.++.-+.-+||.... ..||.-.++........|-..+.+|..+||+.|+-. ..-+-|+|-+..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~ 86 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVI 86 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEE
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHccC-CcccceEEEEec
Confidence 456677888876555 579998888888889999999999999999988744 233344544433
No 255
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=77.31 E-value=9.4 Score=36.10 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=13.4
Q ss_pred EECCHHHHHHHHHhcCCcccCCCcee
Q 021599 50 EFSDPRDADDARYSLNGRDVDGSRII 75 (310)
Q Consensus 50 ~F~~~eda~~Ai~~lng~~l~Gr~I~ 75 (310)
.|.+.++.+.|..+|. .|+|..|.
T Consensus 147 aFV~F~~~e~A~~Ai~--~lng~~i~ 170 (437)
T 3pgw_S 147 AFIEYEHERDMHSAYK--HADGKKID 170 (437)
T ss_pred EEEeeccHHHHHHHHH--HcCCCEEC
Confidence 3445556666666653 45666554
No 256
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=77.27 E-value=1.4 Score=35.61 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=18.9
Q ss_pred CCCCccCCCCCCCCccCCCCC
Q 021599 101 SGRCFNCGIDGHWARDCKAGD 121 (310)
Q Consensus 101 ~~rc~~~G~~g~~~rdc~~~~ 121 (310)
...||+||..||++++|+...
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~~ 139 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLKA 139 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTTT
T ss_pred CCcccccCCcCCEeccCcCCC
Confidence 568999999999999999764
No 257
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.69 E-value=1.4 Score=29.36 Aligned_cols=20 Identities=40% Similarity=1.024 Sum_probs=17.5
Q ss_pred CCcccccCCCCCcccccCCC
Q 021599 122 WKNKCYRCGERGHIERNCQN 141 (310)
Q Consensus 122 ~~~~~~~cg~~~h~~~~~~~ 141 (310)
....||.||..+|+.++|+.
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSG
T ss_pred CCCccccCCCcCcccccCCC
Confidence 35689999999999999984
No 258
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=72.44 E-value=13 Score=27.36 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=41.0
Q ss_pred cCCCCCcHHHHHHHH-HhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCC
Q 021599 17 RLASRTRSRDLEEIF-SRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNG 66 (310)
Q Consensus 17 nL~~~~te~dL~~~F-~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng 66 (310)
.++.-+.-+||+... ..||.-.++....+.-.|-..+.+|..+||+.|+-
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEETTEEEECCCHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecceeEEecccHHHHHHHHHHhcc
Confidence 456667778877655 57999988888888889999999999999988763
No 259
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=68.54 E-value=18 Score=26.37 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=46.1
Q ss_pred cCCCCCcHHHHHHHH-HhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 17 RLASRTRSRDLEEIF-SRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 17 nL~~~~te~dL~~~F-~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
.++.-+.-++|.... ..||.-.++....+.-.|-..+.+|..+||+.|+-. ..-+.|+|-+..
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDrs-~~mkSLRIlL~~ 82 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRS-SSMKSLRILLLS 82 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECSSCEEECCSHHHHHHHHHHHHHS-TTTTEEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecceeEEeccCHHHHHHHHHHhccC-ccccceEEEEEc
Confidence 355667777776555 579999888888888899999999999999887633 333444554443
No 260
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=68.41 E-value=15 Score=27.48 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=40.6
Q ss_pred cCCCCCcHHHHHHHH-HhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCC
Q 021599 17 RLASRTRSRDLEEIF-SRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNG 66 (310)
Q Consensus 17 nL~~~~te~dL~~~F-~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng 66 (310)
.++.-+.-+||+... ..||.-.++....+.-.|-..+++|+.+||+.|+-
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~IPL~~Q~DLDkAvelLDr 96 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDR 96 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECSSCEEECCSHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecceEEEecccHHHHHHHHHHhcc
Confidence 355667777777655 57999888888888889999999999999988763
No 261
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=63.77 E-value=19 Score=24.05 Aligned_cols=54 Identities=7% Similarity=-0.056 Sum_probs=40.2
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeC--CeEEEEECCHHHHHHHHHhc
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKR--DFAFVEFSDPRDADDARYSL 64 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~--~~afV~F~~~eda~~Ai~~l 64 (310)
..+|.|.++.-..-...|+..|.. ..|..+.+.. +.+.|+|.+.+++..+|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHHc
Confidence 457889999877777889999988 7787776643 46778887666677777653
No 262
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=60.01 E-value=12 Score=30.88 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=35.2
Q ss_pred cEEEEccCCC-C--------CcHHHHHHHH--HhcCCeeEEEEe-----CCeEEEEECC-HHHHHHHHH
Q 021599 11 TRLYVGRLAS-R--------TRSRDLEEIF--SRYGRIRDVDMK-----RDFAFVEFSD-PRDADDARY 62 (310)
Q Consensus 11 ~~l~V~nL~~-~--------~te~dL~~~F--~~~G~V~~v~i~-----~~~afV~F~~-~eda~~Ai~ 62 (310)
.+++|.|++. . ...++|++.| ..|..+.-..+. .++|+|+|.. ..-...|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 4677889886 2 2347899977 888876654442 2489999994 455566653
No 263
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.20 E-value=7.4 Score=26.75 Aligned_cols=21 Identities=38% Similarity=0.733 Sum_probs=17.5
Q ss_pred cCCeeEEEEeCCeEEEEECCH
Q 021599 34 YGRIRDVDMKRDFAFVEFSDP 54 (310)
Q Consensus 34 ~G~V~~v~i~~~~afV~F~~~ 54 (310)
.|+|+.|......|||.|++.
T Consensus 27 lGtV~kV~~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 27 LGTIKKVDSAREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEEETTTTEEEEEETTT
T ss_pred EeEEEEEecCCcEEEEEEccC
Confidence 478888888888999999973
No 264
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.48 E-value=43 Score=24.16 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=34.8
Q ss_pred EccCCCCCcHHHHHHHHHh-cC-CeeEEEEe---CC--eEEEEECCHHHHHHHHHhc
Q 021599 15 VGRLASRTRSRDLEEIFSR-YG-RIRDVDMK---RD--FAFVEFSDPRDADDARYSL 64 (310)
Q Consensus 15 V~nL~~~~te~dL~~~F~~-~G-~V~~v~i~---~~--~afV~F~~~eda~~Ai~~l 64 (310)
+-.+....+..+|++.+++ |+ +|..|..+ .+ -|||++....+|......+
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 3345678899999999987 55 56666543 23 7999999877776655443
No 265
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=46.13 E-value=59 Score=21.19 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=39.2
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEEC----CHHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFS----DPRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i--~~~~afV~F~----~~eda~~Ai~~l 64 (310)
.+|.|.++.-..-...|+..+.....|..+.+ ..+.+.|+|. +.+++..+|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46788888766666778999988877766555 4568889885 456677777653
No 266
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=45.72 E-value=60 Score=23.39 Aligned_cols=45 Identities=7% Similarity=0.226 Sum_probs=30.8
Q ss_pred cHHHHHHHHH----hcC-CeeEEEEe---CCeEEEEECCHHHHHHHHHhcCCc
Q 021599 23 RSRDLEEIFS----RYG-RIRDVDMK---RDFAFVEFSDPRDADDARYSLNGR 67 (310)
Q Consensus 23 te~dL~~~F~----~~G-~V~~v~i~---~~~afV~F~~~eda~~Ai~~lng~ 67 (310)
.|..+++.+. ..| +|..+.++ .||.||++...+++..+|..+.|.
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 3444444444 234 46666664 679999999999988888777654
No 267
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=44.82 E-value=5.5 Score=28.03 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=27.1
Q ss_pred CCeeEEEEeCCeEEEEECCHHHHHHHHHhcC---C--cccCCCceeeeecc
Q 021599 35 GRIRDVDMKRDFAFVEFSDPRDADDARYSLN---G--RDVDGSRIIVEFAR 80 (310)
Q Consensus 35 G~V~~v~i~~~~afV~F~~~eda~~Ai~~ln---g--~~l~Gr~I~V~~ak 80 (310)
|.|++....++|+||+-.+-+++---+..|. | ....|..|..++..
T Consensus 3 G~Vkwfn~~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~ 53 (74)
T 2kcm_A 3 GKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTP 53 (74)
T ss_dssp EEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEEC
T ss_pred EEEEEEECCCCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEE
Confidence 7788888889999998776433222222332 2 22346666555543
No 268
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=44.66 E-value=19 Score=25.72 Aligned_cols=49 Identities=10% Similarity=0.255 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHhcCC-eeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCCcee
Q 021599 22 TRSRDLEEIFSRYGR-IRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGSRII 75 (310)
Q Consensus 22 ~te~dL~~~F~~~G~-V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr~I~ 75 (310)
-++++|+.+++.|-+ ..+|++ +|...+-++..+|.+.....+|+-+.-+
T Consensus 33 ktedelkkyleefrkesqnikv-----lilvsndeeldkakelaqkmeidvrtrk 82 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIKV-----LILVSNDEELDKAKELAQKMEIDVRTRK 82 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEEE-----EEEESSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccHHHHHHHHHHHHhhccCeEE-----EEEEcChHHHHHHHHHHHhhceeeeeee
Confidence 478999999998873 334433 4566777888888765555555544333
No 269
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=43.14 E-value=11 Score=26.65 Aligned_cols=21 Identities=38% Similarity=0.733 Sum_probs=17.7
Q ss_pred cCCeeEEEEeCCeEEEEECCH
Q 021599 34 YGRIRDVDMKRDFAFVEFSDP 54 (310)
Q Consensus 34 ~G~V~~v~i~~~~afV~F~~~ 54 (310)
.|+|+.|....+.|||.|.+.
T Consensus 44 LGTI~kV~~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 44 LGTIKKVDSAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEEETTTTEEEEEETTS
T ss_pred eEEEEEeccCCCEEEEEEcCC
Confidence 478888888888999999974
No 270
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=41.81 E-value=51 Score=23.69 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=33.0
Q ss_pred EEccCCCCCcHHHHHHHHHh-cC-CeeEEEEe---CC--eEEEEECCHHHHHHHH
Q 021599 14 YVGRLASRTRSRDLEEIFSR-YG-RIRDVDMK---RD--FAFVEFSDPRDADDAR 61 (310)
Q Consensus 14 ~V~nL~~~~te~dL~~~F~~-~G-~V~~v~i~---~~--~afV~F~~~eda~~Ai 61 (310)
|+-.++...+..+|++.+++ |+ +|..|..+ .+ -|||++....+|....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHH
Confidence 33446678899999999976 66 56666543 23 7999998776654443
No 271
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=41.52 E-value=98 Score=22.40 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=38.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC----HHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD----PRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~----~eda~~Ai~~l 64 (310)
.+|.|.+|.-..-...|...+...-.|..+.+. .+.+.|+|.. .+++..+|..+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 457788887766677799999887777766654 4688888874 35556666554
No 272
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=41.38 E-value=42 Score=24.71 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=29.0
Q ss_pred EEEEccCCCCCcHHHHHHHHHhc--------CCeeEEEEe---------C----C-eEEEEECCHHHHHHHHH
Q 021599 12 RLYVGRLASRTRSRDLEEIFSRY--------GRIRDVDMK---------R----D-FAFVEFSDPRDADDARY 62 (310)
Q Consensus 12 ~l~V~nL~~~~te~dL~~~F~~~--------G~V~~v~i~---------~----~-~afV~F~~~eda~~Ai~ 62 (310)
.+|| |.+.++++++..++.+| |+|..+... + | |.++.|....++.+.|+
T Consensus 6 ~~~I--l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 6 VNIV--LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp EEEE--ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHH
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHH
Confidence 3444 35667777766555544 356555431 1 1 88889987666655554
No 273
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=41.26 E-value=66 Score=20.31 Aligned_cols=54 Identities=11% Similarity=0.082 Sum_probs=36.0
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC----HHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD----PRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~----~eda~~Ai~~l 64 (310)
.+|.|.++.-..-...|...+...-.|..+.+. .+.+.|+|.. .+++..+|..+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 457788887655556688888888767666654 4577888763 34555666543
No 274
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=40.18 E-value=30 Score=27.17 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=37.5
Q ss_pred CeeEEEEeCCeEEEEECCHHHHHHHHHh-cCCcccCCCceeeeeccCCCCCCCCCCCccCCCCCCCCCCCccCCCCCC
Q 021599 36 RIRDVDMKRDFAFVEFSDPRDADDARYS-LNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGH 112 (310)
Q Consensus 36 ~V~~v~i~~~~afV~F~~~eda~~Ai~~-lng~~l~Gr~I~V~~ak~~~~~~~g~~~~~grg~~~~~~rc~~~G~~g~ 112 (310)
+|..|.+. .|-+...+++....|++. ..|+.+.|..|.|+..... ..|.+||....
T Consensus 25 ~V~~V~l~--IG~ls~v~~e~l~faf~~~~~gt~~e~A~L~i~~~p~~-------------------~~C~~CG~~~~ 81 (139)
T 3a43_A 25 RVKAVRVV--LGELQDVAEDIVKFAMEQLFAGTIAEGAEIEFVEEEAV-------------------FKCRNCNYEWK 81 (139)
T ss_dssp EEEEEEEE--EETTCCCCHHHHHHHHHHHHTTSTTTTCEEEEEEECCE-------------------EEETTTCCEEE
T ss_pred eehhHHhh--HHHHhhhhHHHHHHHHHHHHcCCcccCCEEEEEecCCc-------------------EECCCCCCEEe
Confidence 56666553 344555567777777764 3678889999988876532 35888887643
No 275
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=39.79 E-value=61 Score=20.74 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=37.4
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEECC---HHHHHHHHHh
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFSD---PRDADDARYS 63 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i--~~~~afV~F~~---~eda~~Ai~~ 63 (310)
.+|.|.++.-..-...|+..+.....|..+.+ ..+.+.|+|.. .+++..+|..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 46788888876667788999998877776655 45688888843 3455556644
No 276
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=39.27 E-value=51 Score=26.11 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=32.0
Q ss_pred cCCCCCcHHHHHHHHHh-cC-CeeEEEEeC---C--eEEEEECCHHHHHHHHHh
Q 021599 17 RLASRTRSRDLEEIFSR-YG-RIRDVDMKR---D--FAFVEFSDPRDADDARYS 63 (310)
Q Consensus 17 nL~~~~te~dL~~~F~~-~G-~V~~v~i~~---~--~afV~F~~~eda~~Ai~~ 63 (310)
-+....+..+|++.+++ |+ +|..|..+. + -|||.+....+|.+....
T Consensus 85 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 85 QVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHh
Confidence 35667889999988876 56 566665432 3 799999877666554433
No 277
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=38.74 E-value=88 Score=26.22 Aligned_cols=32 Identities=6% Similarity=-0.065 Sum_probs=26.7
Q ss_pred eeEEEE---eCCeEEEEECCHHHHHHHHHhcCCcc
Q 021599 37 IRDVDM---KRDFAFVEFSDPRDADDARYSLNGRD 68 (310)
Q Consensus 37 V~~v~i---~~~~afV~F~~~eda~~Ai~~lng~~ 68 (310)
|..|.+ ++||-|||=..+.++..||+.|.+..
T Consensus 139 I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 139 ILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp CCEEECCTTSTTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred EEEEEecCCCcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 667666 46899999999999999998887653
No 278
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=38.23 E-value=60 Score=26.15 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=32.9
Q ss_pred EccCCCCCcHHHHHHHHHh-cC-CeeEEEEeC---C--eEEEEECCHHHHHHHHHh
Q 021599 15 VGRLASRTRSRDLEEIFSR-YG-RIRDVDMKR---D--FAFVEFSDPRDADDARYS 63 (310)
Q Consensus 15 V~nL~~~~te~dL~~~F~~-~G-~V~~v~i~~---~--~afV~F~~~eda~~Ai~~ 63 (310)
|-.++...+..+|++.+++ |+ +|..|..+. + -|||++....++......
T Consensus 97 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 97 VFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHh
Confidence 3345678899999999876 66 566665432 3 699999877665444433
No 279
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=38.17 E-value=42 Score=25.01 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=28.8
Q ss_pred CCCCCCCCCCcEEEEccCCCCCcHHHHHHHHHhcCCe
Q 021599 1 MPRYDDRYGGTRLYVGRLASRTRSRDLEEIFSRYGRI 37 (310)
Q Consensus 1 m~~~~~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V 37 (310)
||...+=..+.++||.+.-+......|..++-.||-.
T Consensus 1 ~p~Lpd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~ 37 (104)
T 3pc6_A 1 MPELPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGE 37 (104)
T ss_dssp --CCCCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCE
T ss_pred CCCcchhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCE
Confidence 6666677889999999887666777899999999854
No 280
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=37.89 E-value=60 Score=25.61 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=26.8
Q ss_pred HHHHHHhcCCeeEEEEe-----CC------------------eEEEEECCHHHHHHHHH
Q 021599 27 LEEIFSRYGRIRDVDMK-----RD------------------FAFVEFSDPRDADDARY 62 (310)
Q Consensus 27 L~~~F~~~G~V~~v~i~-----~~------------------~afV~F~~~eda~~Ai~ 62 (310)
..++|..||.+..+... .+ |.+|+|.+.+...++..
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~ 108 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQ 108 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHH
Confidence 34789999987766542 11 99999999988777764
No 281
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=37.22 E-value=56 Score=26.13 Aligned_cols=46 Identities=15% Similarity=0.375 Sum_probs=31.6
Q ss_pred CCCCCcHHHHHHHHHh-cC-CeeEEEEe---CC--eEEEEECCHHHHHHHHHh
Q 021599 18 LASRTRSRDLEEIFSR-YG-RIRDVDMK---RD--FAFVEFSDPRDADDARYS 63 (310)
Q Consensus 18 L~~~~te~dL~~~F~~-~G-~V~~v~i~---~~--~afV~F~~~eda~~Ai~~ 63 (310)
+....+..+|++.++. |+ .|..|..+ .+ -|||.+....+|.+....
T Consensus 94 Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 94 VHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp ECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHh
Confidence 5567899999988876 56 56666543 23 799999876666654433
No 282
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=37.21 E-value=56 Score=23.70 Aligned_cols=52 Identities=6% Similarity=-0.006 Sum_probs=35.6
Q ss_pred EEEccCCCCCcHHHHHHHHHh-cC----CeeEEEEeCC-eEEEEECCHHHHHHHHHhc
Q 021599 13 LYVGRLASRTRSRDLEEIFSR-YG----RIRDVDMKRD-FAFVEFSDPRDADDARYSL 64 (310)
Q Consensus 13 l~V~nL~~~~te~dL~~~F~~-~G----~V~~v~i~~~-~afV~F~~~eda~~Ai~~l 64 (310)
|++..++..++.++|.+.+.. |+ +...++.+-. --+|++.+.++.+.||..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHH
Confidence 556677889999998876654 33 2223333322 5589999999999999743
No 283
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=37.13 E-value=1.1e+02 Score=22.78 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=26.0
Q ss_pred CeeEEEEe---CCeEEEEECCHHHHHHHHHhcCCcc
Q 021599 36 RIRDVDMK---RDFAFVEFSDPRDADDARYSLNGRD 68 (310)
Q Consensus 36 ~V~~v~i~---~~~afV~F~~~eda~~Ai~~lng~~ 68 (310)
.|..+.+. +||-|||=..+.++..||+.+.+..
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 46666663 6799999999999999998776543
No 284
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.12 E-value=6.8 Score=26.52 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=15.4
Q ss_pred cCCeeEEEEeCCeEEEEECCH
Q 021599 34 YGRIRDVDMKRDFAFVEFSDP 54 (310)
Q Consensus 34 ~G~V~~v~i~~~~afV~F~~~ 54 (310)
.|+|+.|...+..|||.|++.
T Consensus 25 lgtV~kV~~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 25 LGKIKRVSSSKQSCLVTFEDN 45 (63)
T ss_dssp EEEECCCCSTTSEEEEEETTS
T ss_pred EEEEEEEecCCCEEEEEEccC
Confidence 356666666677999999874
No 285
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=36.65 E-value=78 Score=19.81 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=35.8
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC---HHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD---PRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~---~eda~~Ai~~l 64 (310)
.+|.|.++.-..-...|+..+.....|..+.+. .+.+.|+|.. .+++..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHc
Confidence 467788887655566788888888777776654 4578888864 34445555443
No 286
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=36.60 E-value=6.4 Score=27.49 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=17.4
Q ss_pred cCCeeEEEEeCCeEEEEECCH
Q 021599 34 YGRIRDVDMKRDFAFVEFSDP 54 (310)
Q Consensus 34 ~G~V~~v~i~~~~afV~F~~~ 54 (310)
.|.|++....++|+||+-.+-
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g 23 (73)
T 3a0j_A 3 KGRVKWFNAEKGYGFIEREGD 23 (73)
T ss_dssp EEEEEEEETTTTEEEEECTTS
T ss_pred CEEEEEEECCCCEEEEecCCC
Confidence 478888888899999987654
No 287
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=36.19 E-value=49 Score=26.54 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=31.3
Q ss_pred cCCCCCcHHHHHHHHHh-cC-CeeEEEEe---CC--eEEEEECCHHHHHHHHHh
Q 021599 17 RLASRTRSRDLEEIFSR-YG-RIRDVDMK---RD--FAFVEFSDPRDADDARYS 63 (310)
Q Consensus 17 nL~~~~te~dL~~~F~~-~G-~V~~v~i~---~~--~afV~F~~~eda~~Ai~~ 63 (310)
.+....+..+|++.+++ |+ +|..|..+ .+ -|||.+....+|.+....
T Consensus 95 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 95 IVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp EECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGG
T ss_pred EEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 35567788888888876 55 56666543 23 799999877666655433
No 288
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=35.93 E-value=5.5 Score=32.02 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=27.4
Q ss_pred hcCCeeEEEEeCCeEEEEECCH-HHHHHHHHhcCC--cccCCCceeeeec
Q 021599 33 RYGRIRDVDMKRDFAFVEFSDP-RDADDARYSLNG--RDVDGSRIIVEFA 79 (310)
Q Consensus 33 ~~G~V~~v~i~~~~afV~F~~~-eda~~Ai~~lng--~~l~Gr~I~V~~a 79 (310)
..|.|++++..+|||||+-.+- +|+-.-+..|.+ ....|..|..++.
T Consensus 63 ~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~~~L~eGq~V~Fev~ 112 (147)
T 3aqq_A 63 YKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMC 112 (147)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESSBCCCTTCEEEEEEE
T ss_pred cceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCCCcCCCCCEEEEEEE
Confidence 3588888888899999998763 332222222222 2334566555554
No 289
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=35.69 E-value=43 Score=25.13 Aligned_cols=49 Identities=10% Similarity=0.232 Sum_probs=27.8
Q ss_pred EEEEccCCCCCcHHHHHHHHHhc-------C-CeeEEEEe---------C----C-eEEEEECC-HHHHHHHHH
Q 021599 12 RLYVGRLASRTRSRDLEEIFSRY-------G-RIRDVDMK---------R----D-FAFVEFSD-PRDADDARY 62 (310)
Q Consensus 12 ~l~V~nL~~~~te~dL~~~F~~~-------G-~V~~v~i~---------~----~-~afV~F~~-~eda~~Ai~ 62 (310)
.+|| |.+.++++++..++.+| | +|..+... + | |.++.|.. ..++...|+
T Consensus 12 ~~~I--l~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~ele 83 (110)
T 2j5a_A 12 TVFA--VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELD 83 (110)
T ss_dssp EEEE--ECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHHH
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHHH
Confidence 3444 35667777766555544 3 55555431 1 1 88889987 555554443
No 290
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=35.64 E-value=1.1e+02 Score=23.30 Aligned_cols=43 Identities=5% Similarity=-0.073 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHHHhcCC
Q 021599 24 SRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARYSLNG 66 (310)
Q Consensus 24 e~dL~~~F~~~G~V~~v~i~~~----~afV~F~~~eda~~Ai~~lng 66 (310)
.+++.+.+..+-+|..|....| ++.|.+.+.+++...+..|.+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEESSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhheeeeeeCCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 5678888889999999987655 677889999999998887764
No 291
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=35.52 E-value=77 Score=19.46 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=35.7
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC---HHHHHHHHHhc
Q 021599 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD---PRDADDARYSL 64 (310)
Q Consensus 12 ~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~---~eda~~Ai~~l 64 (310)
+|.|.++.-..-...|+..+.....|..+.+. .+.+.|+|.. .+++..+|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHc
Confidence 56777887665667788888888777666654 4577888763 45555666543
No 292
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=35.52 E-value=76 Score=21.60 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=42.2
Q ss_pred CCCCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCC---eEEEEECCHHHHHHHHHhcCCccc
Q 021599 6 DRYGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRD---FAFVEFSDPRDADDARYSLNGRDV 69 (310)
Q Consensus 6 ~~~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~---~afV~F~~~eda~~Ai~~lng~~l 69 (310)
+......|.|+-+......+.|.+-+...|.-..|.-... .-+--|.+.++|..++..|...-+
T Consensus 5 ~~~~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 5 SSSGLYKVQIGAFKVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp CCCCEEEEEEEEESCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCCCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 3455688889988877777778877777674333321122 223368899999999887765444
No 293
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=34.45 E-value=69 Score=22.16 Aligned_cols=54 Identities=11% Similarity=0.234 Sum_probs=37.3
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEECC----HHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFSD----PRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i--~~~~afV~F~~----~eda~~Ai~~l 64 (310)
.+|.|.++.-..-...|...+...-.|..+.+ ....+.|+|.. .+++..+|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 46778887655555668888888877776665 44688888853 45566666554
No 294
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=34.31 E-value=1.3e+02 Score=23.01 Aligned_cols=49 Identities=8% Similarity=0.004 Sum_probs=37.3
Q ss_pred cCCCCCcHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHH-HhcC
Q 021599 17 RLASRTRSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDAR-YSLN 65 (310)
Q Consensus 17 nL~~~~te~dL~~~F~~~G~V~~v~i~~~----~afV~F~~~eda~~Ai-~~ln 65 (310)
.+......+++.+.+..+-+|.+|....| ++.|.+.+.++....+ +.+.
T Consensus 75 ~~~~~~~~~~~~~~l~~~peV~~~~~vtG~~d~~~~v~~~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 75 ILKSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLINKIQ 128 (152)
T ss_dssp EESSGGGHHHHHHHHHTCTTEEEEEEESSSCSEEEEEEESCHHHHHHHHHHTTT
T ss_pred EECCCCCHHHHHHHHhCCcCeEEEEEEecccCEEEEEEECCHHHHHHHHHHHhh
Confidence 34433346778889999999999998876 6778999999988877 3443
No 295
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=32.67 E-value=1.1e+02 Score=20.39 Aligned_cols=55 Identities=5% Similarity=0.154 Sum_probs=39.1
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEEC----CHHHHHHHHHhc
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFS----DPRDADDARYSL 64 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~----~~eda~~Ai~~l 64 (310)
..+|.|.++.-..-...|+..+.....|..+.+. .+.+.|+|. +.+++..+|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 3567888988766667788999888878777664 458888885 345566666554
No 296
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=32.48 E-value=93 Score=19.44 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=36.8
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC---HHHHHHHHHh
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD---PRDADDARYS 63 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~---~eda~~Ai~~ 63 (310)
.+|.|.++.-..-...|+..+.....|..+.+. .+.+.|+|.. .+++..+|+.
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 2 THLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CCEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 357788887766667788989888777766654 4577888864 3455556544
No 297
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=38.07 E-value=9.8 Score=28.20 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=34.6
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEE-------------------------EeCCeEEEEECCHHHHHHHHHh
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVD-------------------------MKRDFAFVEFSDPRDADDARYS 63 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~-------------------------i~~~~afV~F~~~eda~~Ai~~ 63 (310)
.+|-|.|-|||..+-..++.-.....|---+|+ +..|.|+|.|.+.++...||.+
T Consensus 17 qnclikiinipqgtlkaevvlavrhlgyefycdyidensnqinsnliqqdqhpqlndllkegqamirfqnsdeqrlaiqk 96 (137)
T 2lsl_A 17 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDENSNQINSNLIQQDQHPQLNDLLKEGQAMIRFQNSDEQRLAIQK 96 (137)
Confidence 457777889988776555432222222111111 0124899999999988888876
Q ss_pred cC
Q 021599 64 LN 65 (310)
Q Consensus 64 ln 65 (310)
|-
T Consensus 97 ll 98 (137)
T 2lsl_A 97 LL 98 (137)
Confidence 64
No 298
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=31.02 E-value=89 Score=19.64 Aligned_cols=54 Identities=13% Similarity=0.270 Sum_probs=35.2
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEECC----HHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFSD----PRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i--~~~~afV~F~~----~eda~~Ai~~l 64 (310)
.+|.|.++.-..-...|+..+.....|..+.+ ..+.+.|+|.. .+++..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHC
Confidence 45778887654445668888887766655544 45688888863 34556666554
No 299
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=30.85 E-value=1.6e+02 Score=22.63 Aligned_cols=48 Identities=6% Similarity=0.164 Sum_probs=36.9
Q ss_pred cCCCCCcHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHHHhcC
Q 021599 17 RLASRTRSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARYSLN 65 (310)
Q Consensus 17 nL~~~~te~dL~~~F~~~G~V~~v~i~~~----~afV~F~~~eda~~Ai~~ln 65 (310)
.++. ...+++.+.+..+-+|.+|....| ++.|.+.+.++....++.|.
T Consensus 74 ~~~~-~~~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~d~~~l~~~~~~l~ 125 (151)
T 2cyy_A 74 KVKA-GKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLIG 125 (151)
T ss_dssp EECT-TCHHHHHHHHHTCTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred EECc-ccHHHHHHHHhcCCCeeEeeEecCCCCEEEEEEECCHHHHHHHHHHHh
Confidence 4443 345778889999999999988765 67789999998888775543
No 300
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=30.52 E-value=41 Score=24.76 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=20.4
Q ss_pred CcHHHHHHHHHhcCCeeEEEEeCCeE
Q 021599 22 TRSRDLEEIFSRYGRIRDVDMKRDFA 47 (310)
Q Consensus 22 ~te~dL~~~F~~~G~V~~v~i~~~~a 47 (310)
.+++.|.++|..+|+|+.-.++-+||
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MFGg~~ 29 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMFGGFG 29 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEETTEEE
T ss_pred hHHHHHHHHHhccCCceEeeccCcEE
Confidence 46778999999999999877765433
No 301
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=30.28 E-value=22 Score=24.78 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=27.0
Q ss_pred cCCeeEEEEeCCeEEEEECCHHHHHHHHHhcC--CcccCCCceeeeecc
Q 021599 34 YGRIRDVDMKRDFAFVEFSDPRDADDARYSLN--GRDVDGSRIIVEFAR 80 (310)
Q Consensus 34 ~G~V~~v~i~~~~afV~F~~~eda~~Ai~~ln--g~~l~Gr~I~V~~ak 80 (310)
.|.|++.+..++|+||+-.+-.+.---+..|. +....|..|..++..
T Consensus 4 ~G~Vkwfn~~KGfGFI~~~dg~~dFvH~s~i~~~g~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 4 NGTITTWFKDKGFGFIKDENGDNRYFHVIKVANPDLIKKDAAVTFEPTT 52 (74)
T ss_dssp EEEEEEEETTTTEEEEEESSSCEEEEEGGGBSSGGGCCTTCEEEEEEEE
T ss_pred ceEEEEEECCCCeEEEecCCCCceEEEHhHcccCCCCCCCCEEEEEEEe
Confidence 57888888889999998775322111111222 233356666655544
No 302
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=30.13 E-value=24 Score=24.24 Aligned_cols=20 Identities=25% Similarity=0.672 Sum_probs=16.0
Q ss_pred CCeeEEEEeCCeEEEEECCH
Q 021599 35 GRIRDVDMKRDFAFVEFSDP 54 (310)
Q Consensus 35 G~V~~v~i~~~~afV~F~~~ 54 (310)
|.|+.|....+.|+|.|.+.
T Consensus 32 gtI~~V~~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 32 GTIKKINILKQSCFIIFEDS 51 (66)
T ss_dssp EEEEEEETTTTEEEEEETTT
T ss_pred eEEEEEccCCcEEEEEEccC
Confidence 66777777778999999873
No 303
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=29.80 E-value=1e+02 Score=19.02 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=38.0
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC----HHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD----PRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~----~eda~~Ai~~l 64 (310)
.+|.|.++.-..-...|+..+.....|..+.+. .+.+.|+|.. .+++..+|+.+
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 61 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINEL 61 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTT
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 367899988777777888999888777766654 4688888863 34555556443
No 304
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=29.76 E-value=88 Score=19.69 Aligned_cols=52 Identities=10% Similarity=0.137 Sum_probs=33.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEECCHHHHHHHHHh
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFSDPRDADDARYS 63 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i--~~~~afV~F~~~eda~~Ai~~ 63 (310)
.+|.|.++.-..-...|...+... .|..+.+ ..+.+.|+|...+++..+|+.
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCHHHHHHHHHT
T ss_pred EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 356777776555556688888877 6765554 456888888765444555543
No 305
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.64 E-value=37 Score=26.02 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=34.7
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEEC--CHHHHHHHHH
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFS--DPRDADDARY 62 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~~afV~F~--~~eda~~Ai~ 62 (310)
..+.+|+|.++. ..+.++|+.++..+|....-.|....-+|... ....++.|+.
T Consensus 23 f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~ 78 (129)
T 2d8m_A 23 LQGVVVVLSGFQ-NPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLG 78 (129)
T ss_dssp STTEEEEEESCC-TTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHH
T ss_pred CCCeEEEEeCCC-cHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHH
Confidence 567899999987 56788999999999965444443443333333 3344455553
No 306
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=29.59 E-value=96 Score=28.54 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=40.1
Q ss_pred EEEEccCCCCC----cHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCCC
Q 021599 12 RLYVGRLASRT----RSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDGS 72 (310)
Q Consensus 12 ~l~V~nL~~~~----te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~Gr 72 (310)
--+||||..-. ....+.++..+||.|..+.+. +.-+|...+.+.++.++.. ++..+.++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g-~~~~vvv~~p~~~k~il~~-~~~~f~~r 78 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG-TKTTVIVGHHQLAKEVLIK-KGKDFSGR 78 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET-TEEEEEECSHHHHHHHHTT-TTTTTBBC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC-CCCEEEECCHHHHHHHHHh-CcHhhCCC
Confidence 34688886432 246678888999999888764 3556777888888888743 33444443
No 307
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=29.14 E-value=1.6e+02 Score=23.35 Aligned_cols=47 Identities=6% Similarity=0.164 Sum_probs=36.3
Q ss_pred cCCCCCcHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHHHhc
Q 021599 17 RLASRTRSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARYSL 64 (310)
Q Consensus 17 nL~~~~te~dL~~~F~~~G~V~~v~i~~~----~afV~F~~~eda~~Ai~~l 64 (310)
.++. ...+++.+.+..+-+|.+|....| ++.|.+.+.++....++.|
T Consensus 94 ~~~~-~~~~~v~~~l~~~peV~~~~~vtG~~d~l~~v~~~d~~~l~~~l~~l 144 (171)
T 2e1c_A 94 KVKA-GKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDLI 144 (171)
T ss_dssp EECT-TCHHHHHHHHHTSTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHHH
T ss_pred EECc-chHHHHHHHHhcCcCeEEEEEeeCCCCEEEEEEECCHHHHHHHHHHH
Confidence 4443 345778888999999999988765 6778999999888877544
No 308
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=28.94 E-value=1.1e+02 Score=19.16 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=38.0
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC----HHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD----PRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~----~eda~~Ai~~l 64 (310)
.+|.|.++.-..-...|...+.....|..+.+. .+.+.|+|.. .+++..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 467788888777777788999888778766654 4578888853 45556666554
No 309
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=28.90 E-value=1.1e+02 Score=19.71 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=37.5
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEECC----HHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFSD----PRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i--~~~~afV~F~~----~eda~~Ai~~l 64 (310)
.+|.|.++.-..-...|+..+.....|..+.+ ..+.+.|+|.. .+++..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46788888776667778888888777776655 34578888853 34556666554
No 310
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=28.89 E-value=1.1e+02 Score=24.23 Aligned_cols=60 Identities=7% Similarity=0.058 Sum_probs=32.9
Q ss_pred CCCCCCCCCCcEEEEccCCC-----CCcHHHHHHHHH-hcCCeeEEEEeCCeEEEEEC-CHHHHHHHHH
Q 021599 1 MPRYDDRYGGTRLYVGRLAS-----RTRSRDLEEIFS-RYGRIRDVDMKRDFAFVEFS-DPRDADDARY 62 (310)
Q Consensus 1 m~~~~~~~~~~~l~V~nL~~-----~~te~dL~~~F~-~~G~V~~v~i~~~~afV~F~-~~eda~~Ai~ 62 (310)
||...-...+.+..|.|+.. .-..+.|..||. +.|.-..++ .+-..|.-. +...++..|.
T Consensus 32 mP~~~v~~eGkKTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id--~~rlii~G~~~~~~i~~~L~ 98 (148)
T 2d74_B 32 VPGALVTIEGNKTIIENFKDIADALNRDPQHLLKFLLREIATAGTLE--GRRVVLQGRFTPYLIANKLK 98 (148)
T ss_dssp CCCCCEEEETTEEEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE--TTEEEESSCCCHHHHHHHHH
T ss_pred cCCCeEEEecCeEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec--CCEEEEEeeeCHHHHHHHHH
Confidence 44444334455666667753 223466667764 789877777 454444322 3455555554
No 311
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=28.66 E-value=10 Score=26.31 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=18.2
Q ss_pred hcCCeeEEEEeCCeEEEEECCH
Q 021599 33 RYGRIRDVDMKRDFAFVEFSDP 54 (310)
Q Consensus 33 ~~G~V~~v~i~~~~afV~F~~~ 54 (310)
..|.|++....++|+||+-.+-
T Consensus 6 ~~G~Vk~fn~~kGfGFI~~~~g 27 (71)
T 3i2z_B 6 IKGNVKWFNESKGFGFITPEDG 27 (71)
T ss_dssp EEEEEEEEETTTTEEEEEETTC
T ss_pred ccEEEEEEECCCCcEEEecCCC
Confidence 4688998888899999987654
No 312
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=28.55 E-value=50 Score=28.88 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=23.8
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeE
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRD 39 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G~V~~ 39 (310)
...++|+|||+.++...|..++.. ..+..
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~ 138 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFAR 138 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCE
Confidence 356889999999999999999987 55543
No 313
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=28.52 E-value=32 Score=34.18 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=35.0
Q ss_pred cCCCCCcHHHHHHHHH----hcCCeeEEEEeC-------CeEEEEECCHHHHHHHHHhc
Q 021599 17 RLASRTRSRDLEEIFS----RYGRIRDVDMKR-------DFAFVEFSDPRDADDARYSL 64 (310)
Q Consensus 17 nL~~~~te~dL~~~F~----~~G~V~~v~i~~-------~~afV~F~~~eda~~Ai~~l 64 (310)
.+....+-.||..+|- .+|-|+.+.|.. .+++|.|.+.++|..++..|
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3444555568888884 577888887731 27889999999999888654
No 314
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=28.27 E-value=1.2e+02 Score=19.34 Aligned_cols=54 Identities=9% Similarity=0.239 Sum_probs=36.6
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEECC----HHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFSD----PRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i--~~~~afV~F~~----~eda~~Ai~~l 64 (310)
.+|.|.++.-..-...|+..+...-.|..+.+ ..+.+.|+|.. .+++..+|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 4 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778888765555678888888777776655 44588888863 35556666554
No 315
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=28.23 E-value=27 Score=23.24 Aligned_cols=21 Identities=38% Similarity=0.733 Sum_probs=16.8
Q ss_pred cCCeeEEEEeCCeEEEEECCH
Q 021599 34 YGRIRDVDMKRDFAFVEFSDP 54 (310)
Q Consensus 34 ~G~V~~v~i~~~~afV~F~~~ 54 (310)
.|+|+.|......|+|.|.+.
T Consensus 21 lGtI~~V~~~~~~clV~F~D~ 41 (58)
T 4hcz_A 21 LGTIKKVDSAREVCLVQFEDD 41 (58)
T ss_dssp EEEEEEEETTTTEEEEEETTS
T ss_pred eEEEEEEecCCCEEEEEEcCC
Confidence 377888877777999999874
No 316
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=28.08 E-value=42 Score=25.95 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=41.3
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcC-CeeEEEEeCCeEEEEECCHHH
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYG-RIRDVDMKRDFAFVEFSDPRD 56 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G-~V~~v~i~~~~afV~F~~~ed 56 (310)
.+..++|-..+++..|.-|-..+.+.| +|++.+-..|.-||.|...++
T Consensus 12 ~g~p~l~l~~~fdraW~rvg~ALdr~Gf~V~Drdrs~G~y~V~Y~~~~~ 60 (127)
T 2yh5_A 12 TGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSD 60 (127)
T ss_dssp TSCEEEEEESCHHHHHHHHHHHHHHTTEEEEEEEGGGTEEEEEECCCCH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEeeeccCeEEEEEeCCCCc
Confidence 455677778999999999999999999 788888888999999997763
No 317
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=27.90 E-value=12 Score=25.48 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=16.4
Q ss_pred CCeeEEEEeCCeEEEEECCH
Q 021599 35 GRIRDVDMKRDFAFVEFSDP 54 (310)
Q Consensus 35 G~V~~v~i~~~~afV~F~~~ 54 (310)
|.|++....++|+||+-.+-
T Consensus 3 G~Vk~fn~~kGfGFI~~~~g 22 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKDEG 22 (66)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEECCCCEEEEecCCC
Confidence 67888888899999997753
No 318
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=27.82 E-value=1.2e+02 Score=19.18 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=38.4
Q ss_pred CCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECCH----HHHHHHHHh
Q 021599 9 GGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSDP----RDADDARYS 63 (310)
Q Consensus 9 ~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~~----eda~~Ai~~ 63 (310)
...+|.|.++.-..-...|...+.....|..+.+. .+.+.|+|... +++..+|+.
T Consensus 4 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 4 GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHH
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678899998777778888999888777766654 45788888642 334455543
No 319
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=27.71 E-value=1.2e+02 Score=22.81 Aligned_cols=43 Identities=12% Similarity=0.232 Sum_probs=34.3
Q ss_pred cHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHH-HhcC
Q 021599 23 RSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDAR-YSLN 65 (310)
Q Consensus 23 te~dL~~~F~~~G~V~~v~i~~~----~afV~F~~~eda~~Ai-~~ln 65 (310)
..+++.+.+..+.+|..|....| ++.|.+.+.++....+ +.|.
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~~G~~d~~~~v~~~d~~~l~~~~~~~l~ 123 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNKIG 123 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCCSSSSSEEEEEEESSHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhcCCCeEEEEEecCCCCEEEEEEECCHHHHHHHHHHHhh
Confidence 45677888889999999988765 6678899999998888 5554
No 320
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=26.92 E-value=1.8e+02 Score=21.70 Aligned_cols=51 Identities=10% Similarity=0.189 Sum_probs=22.9
Q ss_pred EEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEEC----CHHHHHHHHHh
Q 021599 13 LYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFS----DPRDADDARYS 63 (310)
Q Consensus 13 l~V~nL~~~~te~dL~~~F~~~G~V~~v~i--~~~~afV~F~----~~eda~~Ai~~ 63 (310)
|.|.++.-..-...|+..+...-.|..+.+ ..+.+.|+|. +.+++..+|+.
T Consensus 78 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 134 (151)
T 1p6t_A 78 FDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 134 (151)
T ss_dssp EEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444454444444445555544444433322 2335555554 23444444443
No 321
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=26.29 E-value=23 Score=25.76 Aligned_cols=19 Identities=16% Similarity=0.442 Sum_probs=15.3
Q ss_pred hcCCeeEEEEeCCeEEEEE
Q 021599 33 RYGRIRDVDMKRDFAFVEF 51 (310)
Q Consensus 33 ~~G~V~~v~i~~~~afV~F 51 (310)
.-|.|++.+..++|+||+.
T Consensus 9 ~tG~VKWFn~~KGfGFI~~ 27 (90)
T 3ulj_A 9 GSGHCKWFNVRMGFGFISM 27 (90)
T ss_dssp EEEEEEEEETTTTEEEEEE
T ss_pred cceEEEEeeCCCCeEEeEe
Confidence 3578888888899999963
No 322
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=26.21 E-value=54 Score=24.35 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=20.5
Q ss_pred eEEEEECCHH---HHHHHHHhcCCcccCCCceeee
Q 021599 46 FAFVEFSDPR---DADDARYSLNGRDVDGSRIIVE 77 (310)
Q Consensus 46 ~afV~F~~~e---da~~Ai~~lng~~l~Gr~I~V~ 77 (310)
.-.|.|.... .+..|........+.|..|.+.
T Consensus 64 hIIvK~~~~~~KErILkaar~k~~vtykg~pirls 98 (100)
T 2w7a_A 64 HIIVRFTKVEMKEKMLRAAREKGRVTLKGKPIRLT 98 (100)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHCCEEETTEEEEEE
T ss_pred eEEEEecccccHHHHHHHHHHhCceeeCCcceeec
Confidence 5566676654 4445554555677888888764
No 323
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=26.17 E-value=28 Score=30.60 Aligned_cols=31 Identities=19% Similarity=0.067 Sum_probs=24.4
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEE
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDV 40 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v 40 (310)
...++|+|||+.++...|..++.....+..+
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~ 144 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQ 144 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEE
Confidence 3467899999999999999999765555443
No 324
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=32.13 E-value=14 Score=25.45 Aligned_cols=20 Identities=20% Similarity=0.581 Sum_probs=16.9
Q ss_pred cCCeeEEEEeCCeEEEEECC
Q 021599 34 YGRIRDVDMKRDFAFVEFSD 53 (310)
Q Consensus 34 ~G~V~~v~i~~~~afV~F~~ 53 (310)
.|.|++....++|+||+-.+
T Consensus 6 ~G~Vk~fn~~kGfGFI~~~~ 25 (70)
T 2lss_A 6 VGKVKWYNSTKNFGFIEQDN 25 (70)
Confidence 48888888889999998765
No 325
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=26.09 E-value=11 Score=27.37 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=15.3
Q ss_pred hcCCeeEEEEeCCeEEEEECCH
Q 021599 33 RYGRIRDVDMKRDFAFVEFSDP 54 (310)
Q Consensus 33 ~~G~V~~v~i~~~~afV~F~~~ 54 (310)
..|.|++++ ++|+||+-.+-
T Consensus 19 ~~G~Vkwf~--KGfGFI~~ddg 38 (89)
T 1wfq_A 19 ETGVIEKLL--TSYGFIQCSER 38 (89)
T ss_dssp EEEEEEEEC--SSEEEEEETTT
T ss_pred cceEEEEEe--CCeeEEecCCC
Confidence 458888774 89999987653
No 326
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=25.96 E-value=1.4e+02 Score=19.30 Aligned_cols=55 Identities=9% Similarity=0.244 Sum_probs=38.7
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEE--EEeCCeEEEEECC----HHHHHHHHHhc
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDV--DMKRDFAFVEFSD----PRDADDARYSL 64 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v--~i~~~~afV~F~~----~eda~~Ai~~l 64 (310)
..+|.|.++.-..-...|+..+.....|..+ .+..+.+.|+|.. .+++..+|+.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 4568899998777777888989887666554 4455688888864 35556666554
No 327
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=25.01 E-value=86 Score=28.59 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=36.5
Q ss_pred EEEccCCCC---CcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHh
Q 021599 13 LYVGRLASR---TRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYS 63 (310)
Q Consensus 13 l~V~nL~~~---~te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~ 63 (310)
-+||||..- -....|.++..+||.|..+.+. +.-+|.+.+.+.++.++..
T Consensus 19 PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g-~~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 19 PIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG-SQRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp TTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET-TEEEEEECSHHHHHHHHHT
T ss_pred ccccChhhhccccHhHHHHHHHHHhCCEEEEEEC-CccEEEECCHHHHHHHHhc
Confidence 356777532 2356688889999999877763 4667888999999888754
No 328
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.63 E-value=1.9e+02 Score=20.40 Aligned_cols=53 Identities=8% Similarity=0.181 Sum_probs=33.6
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEEC-CHHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFS-DPRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i--~~~~afV~F~-~~eda~~Ai~~l 64 (310)
.+|.|. +.-..-...|+..|.+.-.|..+.+ ..+.+.|+|. +.+++..+|+.+
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~ 76 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGT 76 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTT
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHh
Confidence 356666 5544445668888888776766655 4557778875 445666666543
No 329
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=24.51 E-value=33 Score=23.27 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=16.9
Q ss_pred cCCeeEEEEeCCeEEEEECC
Q 021599 34 YGRIRDVDMKRDFAFVEFSD 53 (310)
Q Consensus 34 ~G~V~~v~i~~~~afV~F~~ 53 (310)
.|.|++.+..++|+||+-.+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~ 22 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDE 22 (67)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEECCCCeEEEecCC
Confidence 47888888889999998765
No 330
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=24.35 E-value=1.3e+02 Score=18.68 Aligned_cols=54 Identities=7% Similarity=0.103 Sum_probs=35.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEEC---CHHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFS---DPRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~---~~eda~~Ai~~l 64 (310)
.+|.|.++.-..-...|+..+...-.|..+.+. .+.+.|+|. +.+.+..+|+.+
T Consensus 4 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 4 VILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHC
Confidence 357788876655556788888887777776653 457788876 334555666543
No 331
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=24.30 E-value=34 Score=23.08 Aligned_cols=21 Identities=14% Similarity=0.482 Sum_probs=17.3
Q ss_pred cCCeeEEEEeCCeEEEEECCH
Q 021599 34 YGRIRDVDMKRDFAFVEFSDP 54 (310)
Q Consensus 34 ~G~V~~v~i~~~~afV~F~~~ 54 (310)
.|.|++....++|+||+-.+-
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~g 23 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFIEVEGG 23 (66)
T ss_dssp EEEEEEEETTTTEEEEEETTE
T ss_pred ceEEEEEECCCCeEEEecCCC
Confidence 478888888899999987653
No 332
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=24.26 E-value=1.6e+02 Score=21.77 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=25.4
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEEC----CHHHHHHHHHh
Q 021599 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFS----DPRDADDARYS 63 (310)
Q Consensus 12 ~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i--~~~~afV~F~----~~eda~~Ai~~ 63 (310)
.|.|.++.-..-...|+..+...-.|..+.+ ..+.+.|+|. +.+++..+|+.
T Consensus 83 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 140 (149)
T 2ew9_A 83 ELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEE 140 (149)
T ss_dssp EEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHH
T ss_pred EEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHh
Confidence 4555555544334445555555544544433 2345566654 23444455544
No 333
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=24.24 E-value=2.5e+02 Score=21.79 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=35.9
Q ss_pred cCCCCC--cHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHHHh
Q 021599 17 RLASRT--RSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARYS 63 (310)
Q Consensus 17 nL~~~~--te~dL~~~F~~~G~V~~v~i~~~----~afV~F~~~eda~~Ai~~ 63 (310)
.++... ..+++.+.+..+-+|.+|....| +++|.+.+.++....+..
T Consensus 70 ~v~~~~~~~~~~~~~~l~~~peV~~~~~vtG~~D~~l~v~~~d~~~l~~~l~~ 122 (162)
T 3i4p_A 70 RTASHSIEWLKRFSEVVSEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFYKR 122 (162)
T ss_dssp ECCSCCHHHHHHHHHHHHHCTTEEEEEECCSSCSEEEEEEESSHHHHHHHHHH
T ss_pred EEcCCChHHHHHHHHHHhcCCCEEEeeecCCCCCEEEEEEECCHHHHHHHHHH
Confidence 455443 24677788889999999998766 778889999988887754
No 334
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=24.20 E-value=64 Score=29.45 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=19.8
Q ss_pred cEEEEccCCCCCcHHHHHHHHHh
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSR 33 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~ 33 (310)
..++|+|||++++..-|..+|..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35789999999999999888874
No 335
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=24.06 E-value=1.4e+02 Score=18.88 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=37.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe--CCeEEEEECC--HHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK--RDFAFVEFSD--PRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~--~~~afV~F~~--~eda~~Ai~~l 64 (310)
.+|.|.++.-..-...|...+.....|..+.+. .+.+.|+|.. .+++..+|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHc
Confidence 467888988776677788889888777766654 4578888875 34445555443
No 336
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=29.01 E-value=17 Score=27.32 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=33.4
Q ss_pred CcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEe----CC---eE--EEEECCHHHHHHHHHhcCCc
Q 021599 10 GTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMK----RD---FA--FVEFSDPRDADDARYSLNGR 67 (310)
Q Consensus 10 ~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~----~~---~a--fV~F~~~eda~~Ai~~lng~ 67 (310)
.++|.|..+ ..+++|..|+.+.+ +..+.+. .| |. |=.|.+.++|..|+..|...
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 455655544 34566777777776 3333332 22 22 33788999999999888643
No 337
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=23.27 E-value=29 Score=24.42 Aligned_cols=20 Identities=15% Similarity=0.551 Sum_probs=16.6
Q ss_pred cCCeeEEEEeCCeEEEEECC
Q 021599 34 YGRIRDVDMKRDFAFVEFSD 53 (310)
Q Consensus 34 ~G~V~~v~i~~~~afV~F~~ 53 (310)
.|.|++.+..++|+||+-.+
T Consensus 10 ~G~Vkwfn~~kGfGFI~~~~ 29 (79)
T 1h95_A 10 LGTVKWFNVRNGYGFINRND 29 (79)
T ss_dssp EEEEEEEETTTTEEEEEEGG
T ss_pred ceEEEEEECCCCcEEEecCC
Confidence 47888888889999998764
No 338
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=23.18 E-value=58 Score=27.86 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=23.1
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeE
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRD 39 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~ 39 (310)
..++|+|||+.++...|..++.....+..
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~ 124 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPL 124 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCce
Confidence 34889999999999999999986544444
No 339
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=22.92 E-value=65 Score=27.67 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=21.8
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCee
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIR 38 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~ 38 (310)
..+.|+|||+.++...|..++.....+.
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~ 118 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIA 118 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcc
Confidence 3688999999999999988887543333
No 340
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=22.66 E-value=1.8e+02 Score=19.48 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=33.1
Q ss_pred cHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHHH
Q 021599 23 RSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARY 62 (310)
Q Consensus 23 te~dL~~~F~~~G~V~~v~i~~~----~afV~F~~~eda~~Ai~ 62 (310)
..+++.+.+..+-+|.+|....| ++.|.+.+.++....+.
T Consensus 14 ~~~~~~~~l~~~peV~~~~~vtG~~d~l~~v~~~d~~~l~~~~~ 57 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVHVVYGVYDIVVKVEADSMDKLKDFVT 57 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEEECSSSCSEEEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeEEEEEEeccCCEEEEEEECCHHHHHHHHH
Confidence 35778888899999999999876 66788899988888774
No 341
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=22.09 E-value=1.5e+02 Score=18.51 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=37.4
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEECC----HHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFSD----PRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i--~~~~afV~F~~----~eda~~Ai~~l 64 (310)
.+|.|.++.-..-...|...+...-.|..+.+ ..+.+.|+|.. .+++..+|..+
T Consensus 8 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 8 IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 46888898877667778888888777766555 45678888853 34555556543
No 342
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=21.94 E-value=1.2e+02 Score=26.04 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=39.6
Q ss_pred CcEEEEccCCCCCc--HHHHHHHHHh-----cCCe--------eEEEE-e-----C----CeEEEEECCHH---HHHHHH
Q 021599 10 GTRLYVGRLASRTR--SRDLEEIFSR-----YGRI--------RDVDM-K-----R----DFAFVEFSDPR---DADDAR 61 (310)
Q Consensus 10 ~~~l~V~nL~~~~t--e~dL~~~F~~-----~G~V--------~~v~i-~-----~----~~afV~F~~~e---da~~Ai 61 (310)
-+.|.|-|||.... +..+..+|.. |..+ ..+.= + + -.-+|.|.... .+..|.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 47899999998765 4445555442 4322 22211 1 0 15566666554 455555
Q ss_pred HhcCCcccCCCceeeee
Q 021599 62 YSLNGRDVDGSRIIVEF 78 (310)
Q Consensus 62 ~~lng~~l~Gr~I~V~~ 78 (310)
.......+.|..|.+..
T Consensus 132 R~k~~vtykG~pIrlsa 148 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTV 148 (233)
T ss_dssp HTTSCEEETTEEEEEEE
T ss_pred HHhcccccCCCceEEeC
Confidence 55566788998887653
No 343
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=21.90 E-value=91 Score=23.96 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=17.5
Q ss_pred cCCeeEEEEeCC--eE--EEE-ECCHHHHHHHHHhc
Q 021599 34 YGRIRDVDMKRD--FA--FVE-FSDPRDADDARYSL 64 (310)
Q Consensus 34 ~G~V~~v~i~~~--~a--fV~-F~~~eda~~Ai~~l 64 (310)
+=.|+.|.|-.+ +| ||. |-+.++.+.+++.|
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L 78 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVL 78 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHH
Confidence 457888998776 44 555 44444434343333
No 344
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=21.49 E-value=32 Score=23.99 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=15.1
Q ss_pred cHHHHHHHHHhcCCeeEE
Q 021599 23 RSRDLEEIFSRYGRIRDV 40 (310)
Q Consensus 23 te~dL~~~F~~~G~V~~v 40 (310)
|--||++++.+||.|+++
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 567899999999987764
No 345
>4dqz_A Methyltransferase type 12; ligase-activating, bacterial PNKP; 2.30A {Clostridium thermocellum} PDB: 4drf_B 4e6n_B*
Probab=21.34 E-value=53 Score=27.89 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=33.7
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCC-eeEEEEeCC----------eEEEEECCHHHHHHHHHh
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGR-IRDVDMKRD----------FAFVEFSDPRDADDARYS 63 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~-V~~v~i~~~----------~afV~F~~~eda~~Ai~~ 63 (310)
-+|.|.-||....++.++.+|+..|- |.-..+.-+ |.-|+.+...-+.+||.+
T Consensus 118 L~~~~p~lp~rgg~~l~~rLFePLGw~V~a~~~~ld~~fp~WG~Sry~~l~L~g~~rladaL~h 181 (230)
T 4dqz_A 118 LKAKIMMLPCKGGEEIIYRLFEPLGYKVDVEGYMLDEKFPEWGKSRYYTVSLEGEVRVRDLLNH 181 (230)
T ss_dssp EEEEEEEEECTTHHHHHHHHHGGGTCEEEEEEC------------CEEEEEEEEEECHHHHHHH
T ss_pred eEEEeeeeecCCcHHHHHHhhccccceEeeeecccCccCcccCCccceEEEEeeeEEHHHHhhh
Confidence 35777788888888899999999994 433333322 444666655555556543
No 346
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=21.34 E-value=2.2e+02 Score=20.90 Aligned_cols=50 Identities=20% Similarity=0.132 Sum_probs=32.4
Q ss_pred EccCCCCCcHHHHHHHH-HhcC--------CeeEEEEeC-CeEEEEECCHHHHHHHHHhc
Q 021599 15 VGRLASRTRSRDLEEIF-SRYG--------RIRDVDMKR-DFAFVEFSDPRDADDARYSL 64 (310)
Q Consensus 15 V~nL~~~~te~dL~~~F-~~~G--------~V~~v~i~~-~~afV~F~~~eda~~Ai~~l 64 (310)
+--++..++-++|.+-+ .+|+ .+..+++.- +--||++.+.+|.+.|++.+
T Consensus 26 ~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~~ 85 (98)
T 1q1o_A 26 TLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 85 (98)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 33467888887766433 3333 123344332 34699999999999999866
No 347
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=21.23 E-value=1.5e+02 Score=17.94 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=35.2
Q ss_pred cEEEEccCCCCCcHHHHHHHHHhcCCeeEEEE--eCCeEEEEECC----HHHHHHHHHhc
Q 021599 11 TRLYVGRLASRTRSRDLEEIFSRYGRIRDVDM--KRDFAFVEFSD----PRDADDARYSL 64 (310)
Q Consensus 11 ~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i--~~~~afV~F~~----~eda~~Ai~~l 64 (310)
.+|.|.++.-..-...|...+...-.|..+.+ ..+.+.|+|.. .+++..+|..+
T Consensus 4 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (69)
T 2qif_A 4 KTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQ 63 (69)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 35778888765455668888888777766655 34578888863 34455556543
No 348
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=21.15 E-value=2e+02 Score=19.49 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=33.7
Q ss_pred cHHHHHHHHHhcCCeeEEEEeCC----eEEEEECCHHHHHHHHH
Q 021599 23 RSRDLEEIFSRYGRIRDVDMKRD----FAFVEFSDPRDADDARY 62 (310)
Q Consensus 23 te~dL~~~F~~~G~V~~v~i~~~----~afV~F~~~eda~~Ai~ 62 (310)
..+++.+.+..+-+|.+|..+.| +..|.+.+.++....+.
T Consensus 14 ~~~~~~~~l~~~peV~e~~~vtG~~D~ll~v~~~d~~~l~~~i~ 57 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFIT 57 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEECBSSCSEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHhCCCCeeEEEEEcccCCEEEEEEECCHHHHHHHHH
Confidence 35778888999999999998876 67789999999988875
No 349
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=21.11 E-value=35 Score=29.50 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=23.4
Q ss_pred EEEEccCCCCCcHHHHHHHHHhcCCeeEE
Q 021599 12 RLYVGRLASRTRSRDLEEIFSRYGRIRDV 40 (310)
Q Consensus 12 ~l~V~nL~~~~te~dL~~~F~~~G~V~~v 40 (310)
-..|+|||+.++...|..++.....+..+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~ 126 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDM 126 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheE
Confidence 34899999999999999999876655443
No 350
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.92 E-value=1.3e+02 Score=22.02 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=21.9
Q ss_pred eEEEEECCHHHHHHHHHhcCCcccCCCceeeeecc
Q 021599 46 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 80 (310)
Q Consensus 46 ~afV~F~~~eda~~Ai~~lng~~l~Gr~I~V~~ak 80 (310)
...|...+.+.|++||... ..|+.+.|.+.+..
T Consensus 53 ivvvvvddkewaekairfv--kslgaqvliiiydq 85 (134)
T 2l69_A 53 IVVVVVDDKEWAEKAIRFV--KSLGAQVLIIIYDQ 85 (134)
T ss_dssp EEEEECSSHHHHHHHHHHH--HHHCCCCEEEEECS
T ss_pred EEEEEEccHHHHHHHHHHH--HhcCCeEEEEEEeC
Confidence 4567788999999999654 23444555555554
No 351
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=20.89 E-value=1.1e+02 Score=21.47 Aligned_cols=50 Identities=20% Similarity=0.140 Sum_probs=32.7
Q ss_pred EccCCCCCcHHHHHHHH-HhcCC--------eeEEEEeC-CeEEEEECCHHHHHHHHHhc
Q 021599 15 VGRLASRTRSRDLEEIF-SRYGR--------IRDVDMKR-DFAFVEFSDPRDADDARYSL 64 (310)
Q Consensus 15 V~nL~~~~te~dL~~~F-~~~G~--------V~~v~i~~-~~afV~F~~~eda~~Ai~~l 64 (310)
+--++.+++-++|.+-+ .+|+. ...++..- +--||++.+.+|.+.|++.+
T Consensus 5 ~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 5 TLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 33467778777766444 45552 12233322 46799999999999999865
No 352
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=20.51 E-value=64 Score=23.53 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=29.8
Q ss_pred CCCcEEEEccCCCCCcHHHHHHHHHhcCCeeEEEEeCCeEEEEE
Q 021599 8 YGGTRLYVGRLASRTRSRDLEEIFSRYGRIRDVDMKRDFAFVEF 51 (310)
Q Consensus 8 ~~~~~l~V~nL~~~~te~dL~~~F~~~G~V~~v~i~~~~afV~F 51 (310)
..+++|+|.++.. .+.++|++++..+|-...-.+....-+|..
T Consensus 16 l~g~~i~isg~~~-~~r~~l~~li~~~Gg~v~~~~s~~~THlI~ 58 (107)
T 3l3e_A 16 LHKVVVCVSKKLS-KKQSELNGIAASLGADYRRSFDETVTHFIY 58 (107)
T ss_dssp TTTCEEEECGGGG-GGHHHHHHHHHHTTCEEESSCCTTCCEEEC
T ss_pred CCCeEEEEeCCCh-HhHHHHHHHHHHcCCEEeccccCCceEEEe
Confidence 4678999998865 678899999999986544444344333333
No 353
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=20.49 E-value=1e+02 Score=28.29 Aligned_cols=47 Identities=17% Similarity=0.082 Sum_probs=33.7
Q ss_pred EEccCCCC---CcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHH
Q 021599 14 YVGRLASR---TRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDAR 61 (310)
Q Consensus 14 ~V~nL~~~---~te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai 61 (310)
+||||..- .....+.++..+||.|..+.+. +..+|.+.+.+.++.++
T Consensus 13 ~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~-~~~~v~v~~~~~~~~il 62 (470)
T 2ij2_A 13 ELKNLPLLNTDKPVQALMKIADELGEIFKFEAP-GRVTRYLSSQRLIKEAC 62 (470)
T ss_dssp GGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEET-TEEEEEECCHHHHHHHT
T ss_pred ccccHHHHhcccchHHHHHHHHHhCCeEEEecC-CccEEEECCHHHHHHHH
Confidence 36776432 2345677888999999887764 45677788888888776
No 354
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=20.15 E-value=1.2e+02 Score=27.46 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=35.3
Q ss_pred EEccCCC---CCcHHHHHHHHHhcCCeeEEEEeCCeEEEEECCHHHHHHHHHhcCCcccCC
Q 021599 14 YVGRLAS---RTRSRDLEEIFSRYGRIRDVDMKRDFAFVEFSDPRDADDARYSLNGRDVDG 71 (310)
Q Consensus 14 ~V~nL~~---~~te~dL~~~F~~~G~V~~v~i~~~~afV~F~~~eda~~Ai~~lng~~l~G 71 (310)
+||||.. .-....|.++..+||.|..+.+. +.-+|...+.+.++.++. -++..+.+
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g-~~~~vvv~~p~~i~~vl~-~~~~~f~~ 78 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA-WTPVVVLNGLAAVREALV-THGEDTAD 78 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET-TEEEEEEEHHHHHHHHHT-TTGGGSCB
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC-CeeEEEECCHHHHHHHHH-hCChhhcC
Confidence 4677643 23455678888999999888764 334455667777777763 23444433
No 355
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=20.07 E-value=22 Score=27.36 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=0.0
Q ss_pred eEEEEECCHHHHHHHHHhcCCcccCCC
Q 021599 46 FAFVEFSDPRDADDARYSLNGRDVDGS 72 (310)
Q Consensus 46 ~afV~F~~~eda~~Ai~~lng~~l~Gr 72 (310)
++|++|.++..+..||..|+|....|.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~ 32 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGR 32 (135)
T ss_dssp ---------------------------
T ss_pred cccccccCCCchhhhhhhccCCCCCCC
Confidence 678888888888888888887665543
Done!