Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>021600
MEAKVFPLTCAPLVPSPCLLKANVNERISFFKTKALHGVVLRRCTDKEETLLEGMPPEYY
DDEWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVRNARKLVSSFIR
AEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEILKRE
ATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPP
PPEVDAVLLRVDFVREVDALLKEVRLEQNEAQTAEGLDPESVARRLKQQEKQKTIRQVEA
LLDLAINLKW

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  021600
        (310 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2039361 - symbol:PAC "AT2G48120" species:3702 ...   897  6.5e-90   1


>TAIR|locus:2039361 [details] [associations]
            symbol:PAC "AT2G48120" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0016117 "carotenoid
            biosynthetic process" evidence=IMP] [GO:0009501 "amyloplast"
            evidence=IDA] [GO:0009509 "chromoplast" evidence=IDA] [GO:0009513
            "etioplast" evidence=IDA] [GO:0009537 "proplastid" evidence=IDA]
            [GO:0009658 "chloroplast organization" evidence=IMP] [GO:0009965
            "leaf morphogenesis" evidence=IMP] [GO:0071482 "cellular response
            to light stimulus" evidence=IEP] [GO:0010239 "chloroplast mRNA
            processing" evidence=IMP] GO:GO:0009507 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0006351 GO:GO:0009658
            GO:GO:0009965 EMBL:AC007166 GO:GO:0009509 GO:GO:0071482
            GO:GO:0009501 GO:GO:0009513 EMBL:L35241 EMBL:X96480 EMBL:X96482
            EMBL:AK117768 EMBL:BT005304 EMBL:AY086817 IPI:IPI00520848
            IPI:IPI00846236 PIR:F84923 RefSeq:NP_001078079.1 RefSeq:NP_182332.1
            UniGene:At.13480 ProteinModelPortal:Q39089 IntAct:Q39089
            PRIDE:Q39089 EnsemblPlants:AT2G48120.1 GeneID:819424
            KEGG:ath:AT2G48120 TAIR:At2g48120 eggNOG:NOG259036
            HOGENOM:HOG000241413 InParanoid:Q39089 OMA:FPREDPF PhylomeDB:Q39089
            ProtClustDB:CLSN2683745 Genevestigator:Q39089 GO:GO:0009537
            GO:GO:0010239 Uniprot:Q39089
        Length = 313

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 186/318 (58%), Positives = 221/318 (69%)

Query:     1 MEAKVFPLTCA-PLVPSPCLLKAN--VNERISFFKTKALHGVVLRRCT-DKEETLLEGMP 56
             M A    LTCA PL  SP ++ A   +   +S    K       RRC+ + +E LLEGMP
Sbjct:     1 MAATSLVLTCASPLFSSPRVISATKKLTTELSISTAK-----FRRRCSGNNDEVLLEGMP 55

Query:    57 PEYYDDEWQAQRREKTKXXXXXXXXXXXXXXXXXXXXXDIGMRLKGYPEEDVRNARKLVS 116
             PEYYDDEWQA++REKTK                     +IG RLK +PE+D+R ARKLVS
Sbjct:    56 PEYYDDEWQARQREKTKELRRMQREEEEEEERKIEEYREIGTRLKEFPEQDLRKARKLVS 115

Query:   117 SFXXXXXXXXXXXXXXXXXXXLTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEI 176
             SF                   L ELVLM+IWNRLDLARRD+EKDAIRSLDLLYRRVETEI
Sbjct:   116 SFIRAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEI 175

Query:   177 LKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQG 236
             LKR+A+PAM+LLNDLLNMHDGF+D+ WLK+C+K M +TFPREDPF+IL P GFDID HQG
Sbjct:   176 LKRQASPAMKLLNDLLNMHDGFEDDAWLKDCRKRMAETFPREDPFSILMPPGFDIDMHQG 235

Query:   237 PLPPP--PEVDAVLLRVDFVREVDALLKEVRLEQNEA--QTAEGLDPESVARRLKQQEKQ 292
              L PP   E D  LLRVDFVREVDALL+EVR+E++       EGLDPE++A + KQQEKQ
Sbjct:   236 QLRPPIETETDNTLLRVDFVREVDALLQEVRIEEDATTGSKGEGLDPEAIALKFKQQEKQ 295

Query:   293 KTIRQVEALLDLAINLKW 310
             +TIRQ+EA+LDLA+NLKW
Sbjct:   296 RTIRQIEAILDLALNLKW 313


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.137   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      310       270   0.00097  114 3  11 22  0.49    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  198 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  25.46u 0.07s 25.53t   Elapsed:  00:00:27
  Total cpu time:  25.46u 0.07s 25.53t   Elapsed:  00:00:28
  Start:  Fri May 10 03:01:23 2013   End:  Fri May 10 03:01:51 2013

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