BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021600
         (310 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OV8|A Chain A, Crystal Structure Of Stal
 pdb|2OVB|A Chain A, Crystal Structure Of Stal-Sulfate Complex
 pdb|2OVF|A Chain A, Crystal Structure Of Stal-Pap Complex
          Length = 288

 Score = 27.7 bits (60), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 98  MRLKGYPEEDVRNARKLVSSF 118
           MR+KG P EDV   RK+  +F
Sbjct: 118 MRMKGIPPEDVEACRKIAETF 138


>pdb|4EEC|A Chain A, Crystal Structure Of The Glycopeptide Antibiotic
           Sulfotransferase Stal Complexed With A3p And
           Desulfo-A47934.
 pdb|4EEC|B Chain B, Crystal Structure Of The Glycopeptide Antibiotic
           Sulfotransferase Stal Complexed With A3p And
           Desulfo-A47934
          Length = 286

 Score = 27.7 bits (60), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 98  MRLKGYPEEDVRNARKLVSSF 118
           MR+KG P EDV   RK+  +F
Sbjct: 116 MRMKGIPPEDVEACRKIAETF 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,899,292
Number of Sequences: 62578
Number of extensions: 281140
Number of successful extensions: 542
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 11
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)