BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021600
(310 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39089|PAC_ARATH Protein PALE CRESS, chloroplastic OS=Arabidopsis thaliana GN=PAC
PE=2 SV=1
Length = 313
Score = 360 bits (925), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 217/318 (68%), Positives = 256/318 (80%), Gaps = 13/318 (4%)
Query: 1 MEAKVFPLTCA-PLVPSPCLLKAN--VNERISFFKTKALHGVVLRRCT-DKEETLLEGMP 56
M A LTCA PL SP ++ A + +S K RRC+ + +E LLEGMP
Sbjct: 1 MAATSLVLTCASPLFSSPRVISATKKLTTELSISTAK-----FRRRCSGNNDEVLLEGMP 55
Query: 57 PEYYDDEWQAQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVRNARKLVS 116
PEYYDDEWQA++REKTKEL R ++EE+EEE RKIEEYR+IG RLK +PE+D+R ARKLVS
Sbjct: 56 PEYYDDEWQARQREKTKELRRMQREEEEEEERKIEEYREIGTRLKEFPEQDLRKARKLVS 115
Query: 117 SFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYRRVETEI 176
SFIRA EEVEERIEE AE+GEL ELVLM+IWNRLDLARRD+EKDAIRSLDLLYRRVETEI
Sbjct: 116 SFIRAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEI 175
Query: 177 LKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQG 236
LKR+A+PAM+LLNDLLNMHDGF+D+ WLK+C+K M +TFPREDPF+IL P GFDID HQG
Sbjct: 176 LKRQASPAMKLLNDLLNMHDGFEDDAWLKDCRKRMAETFPREDPFSILMPPGFDIDMHQG 235
Query: 237 PLPPP--PEVDAVLLRVDFVREVDALLKEVRLEQN--EAQTAEGLDPESVARRLKQQEKQ 292
L PP E D LLRVDFVREVDALL+EVR+E++ EGLDPE++A + KQQEKQ
Sbjct: 236 QLRPPIETETDNTLLRVDFVREVDALLQEVRIEEDATTGSKGEGLDPEAIALKFKQQEKQ 295
Query: 293 KTIRQVEALLDLAINLKW 310
+TIRQ+EA+LDLA+NLKW
Sbjct: 296 RTIRQIEAILDLALNLKW 313
>sp|Q5NVI3|RED_PONAB Protein Red OS=Pongo abelii GN=IK PE=2 SV=1
Length = 557
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 55 MPPEYYDDEWQAQRREKTKELHRR-RQEEDEEERRKIEEYRD 95
MP EY +DE A RR K K + + RQ+E E ER E+YRD
Sbjct: 60 MPREYNEDEDPAARRRKKKSYYAKLRQQEIERERELAEKYRD 101
>sp|Q13123|RED_HUMAN Protein Red OS=Homo sapiens GN=IK PE=1 SV=3
Length = 557
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 55 MPPEYYDDEWQAQRREKTKELHRR-RQEEDEEERRKIEEYRD 95
MP EY +DE A RR K K + + RQ+E E ER E+YRD
Sbjct: 60 MPREYNEDEDPAARRRKKKSYYAKLRQQEIERERELAEKYRD 101
>sp|Q66HG8|RED_RAT Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1
Length = 557
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 55 MPPEYYDDEWQAQRREKTKELHRR-RQEEDEEERRKIEEYRD 95
MP EY +DE A RR K K + + RQ+E E ER E+YRD
Sbjct: 60 MPREYNEDEDPAARRRKKKSYYAKLRQQEIERERELAEKYRD 101
>sp|Q9Z1M8|RED_MOUSE Protein Red OS=Mus musculus GN=Ik PE=2 SV=2
Length = 557
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 55 MPPEYYDDEWQAQRREKTKELHRR-RQEEDEEERRKIEEYRD 95
MP EY +DE A RR K K + + RQ+E E ER E+YRD
Sbjct: 60 MPREYNEDEDPAARRRKKKSYYAKLRQQEIERERELAEKYRD 101
>sp|O54068|UDG_RHIME UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti (strain 1021)
GN=rkpK PE=3 SV=2
Length = 437
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 90 IEEYRDIGMRLKGYPEEDVRNARKLVSSFIRAEEEVEERIEETAERGELTELVLMVIWNR 149
++ +D G R+ GY E + NARKL+ A + E E A LV++ WN
Sbjct: 341 VQALQDAGARVTGYDPEGMENARKLIEGLDCARDPYEAAAEADA-------LVIITEWNE 393
Query: 150 LDLARRDEEKDAIRS---LDL--LYRR 171
D K +++ +DL +YR+
Sbjct: 394 FRALDFDRLKSTMKTPLLVDLRNIYRK 420
>sp|Q74ZJ6|BRO1_ASHGO Vacuolar protein-sorting protein BRO1 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=BRO1 PE=3 SV=2
Length = 834
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 24/133 (18%)
Query: 84 EEERRKIEEYR-DIGMRLKGYPEEDVRNARKLVSSFIRAEEEVEERIEETAERGELTELV 142
E++ + I R DI L P E+ + K+ SS ++A + E+ + + + E+
Sbjct: 464 EQQSKNILRTRNDIMALLSSVPPENKEDVVKIKSSLLQASQSDEKLFSQV--KPYVNEIQ 521
Query: 143 LM----VIWNR---------------LDLARRDEEKDAIRSLDLLYRRVETEILKREATP 183
L+ ++WN LD ++ DE IR + LY ++ +LK E T
Sbjct: 522 LLNNPTLLWNNFNTFTTSQPTPDLLDLDHSKADEVLAKIRQIRQLYENLK--LLKEERTS 579
Query: 184 AMRLLNDLLNMHD 196
M+ L DL+N D
Sbjct: 580 IMKDLKDLVNQDD 592
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,346,811
Number of Sequences: 539616
Number of extensions: 5422365
Number of successful extensions: 34762
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 467
Number of HSP's that attempted gapping in prelim test: 31219
Number of HSP's gapped (non-prelim): 2578
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)