Query 021600
Match_columns 310
No_of_seqs 15 out of 17
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 04:15:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1029 Endocytic adaptor prot 68.7 1.1E+02 0.0023 34.3 13.1 23 149-180 397-419 (1118)
2 PF13720 Acetyltransf_11: Udp 63.5 26 0.00056 27.2 5.7 51 95-145 20-70 (83)
3 PF02263 GBP: Guanylate-bindin 63.3 6.7 0.00015 35.0 2.8 77 185-266 176-253 (260)
4 cd00922 Cyt_c_Oxidase_IV Cytoc 60.5 7.7 0.00017 32.9 2.6 23 53-75 100-122 (136)
5 PF12005 DUF3499: Protein of u 54.1 5.3 0.00012 34.4 0.6 41 218-258 46-87 (123)
6 PF00850 Hist_deacetyl: Histon 53.4 12 0.00025 34.4 2.7 86 193-285 214-302 (311)
7 PF14561 TPR_20: Tetratricopep 52.9 18 0.00039 28.1 3.3 52 165-220 22-76 (90)
8 PF15236 CCDC66: Coiled-coil d 50.6 1.4E+02 0.003 26.6 8.7 33 67-99 70-102 (157)
9 PF06892 Phage_CP76: Phage reg 48.9 91 0.002 27.0 7.3 88 92-192 70-160 (162)
10 PRK11924 RNA polymerase sigma 48.5 52 0.0011 25.7 5.3 100 186-288 50-153 (179)
11 KOG3005 GIY-YIG type nuclease 45.5 22 0.00048 34.2 3.3 59 181-248 101-173 (276)
12 PF09350 DUF1992: Domain of un 43.7 13 0.00028 28.4 1.2 17 125-141 2-18 (71)
13 PF02936 COX4: Cytochrome c ox 42.5 14 0.00031 31.5 1.4 19 57-75 104-122 (142)
14 PF07991 IlvN: Acetohydroxy ac 40.9 8.9 0.00019 34.1 -0.0 25 222-248 90-114 (165)
15 PF07499 RuvA_C: RuvA, C-termi 36.8 58 0.0012 22.6 3.5 30 102-133 14-43 (47)
16 PF01503 PRA-PH: Phosphoribosy 35.4 1.5E+02 0.0033 22.2 5.8 58 91-170 3-60 (83)
17 PF14943 MRP-S26: Mitochondria 34.6 2.2E+02 0.0047 25.3 7.5 31 104-135 125-155 (170)
18 PRK13403 ketol-acid reductoiso 34.3 24 0.00052 34.5 1.7 26 221-248 100-125 (335)
19 KOG3614 Ca2+/Mg2+-permeable ca 33.8 1.2E+02 0.0025 35.0 6.9 61 96-156 334-412 (1381)
20 PRK14616 4-diphosphocytidyl-2- 27.5 49 0.0011 29.7 2.4 30 199-233 258-287 (287)
21 TIGR00174 miaA tRNA isopenteny 26.4 59 0.0013 30.5 2.8 126 168-302 35-165 (287)
22 PRK14729 miaA tRNA delta(2)-is 26.0 67 0.0015 30.4 3.1 140 151-302 23-169 (300)
23 PRK05289 UDP-N-acetylglucosami 25.4 1.8E+02 0.004 26.1 5.6 41 95-135 196-236 (262)
24 PRK12461 UDP-N-acetylglucosami 25.2 1.7E+02 0.0037 26.5 5.4 42 95-136 192-233 (255)
25 PRK10203 hypothetical protein; 25.0 39 0.00085 28.8 1.3 18 124-141 7-24 (122)
26 PLN02840 tRNA dimethylallyltra 24.8 87 0.0019 31.3 3.7 107 188-302 80-191 (421)
27 PF14854 LURAP: Leucine rich a 24.3 29 0.00062 30.1 0.3 46 184-235 38-83 (121)
28 PRK08404 V-type ATP synthase s 22.6 3.6E+02 0.0077 21.7 6.2 55 66-120 47-101 (103)
29 PF07768 PVL_ORF50: PVL ORF-50 22.1 1.3E+02 0.0029 25.5 3.9 61 38-106 27-95 (118)
30 PF05648 PEX11: Peroxisomal bi 21.3 3.8E+02 0.0083 22.1 6.3 60 251-310 135-196 (223)
31 COG0123 AcuC Deacetylases, inc 21.3 2.2E+02 0.0048 27.4 5.6 83 195-284 215-300 (340)
32 KOG4691 Uncharacterized conser 20.7 6.4E+02 0.014 24.0 8.2 60 77-137 130-192 (227)
33 COG4755 Uncharacterized protei 20.1 1.6E+02 0.0034 26.5 4.0 92 62-154 21-139 (151)
No 1
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.70 E-value=1.1e+02 Score=34.26 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=15.1
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHHHHhhc
Q 021600 149 RLDLARRDEEKDAIRSLDLLYRRVETEILKRE 180 (310)
Q Consensus 149 RLdlARrDdEkdAirsLDLLyRRVEtEilkre 180 (310)
|-+-||+.+|| -|++|.|--+++
T Consensus 397 ~rEaar~ElEk---------qRqlewErar~q 419 (1118)
T KOG1029|consen 397 RREAAREELEK---------QRQLEWERARRQ 419 (1118)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 44556666666 478888877664
No 2
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=63.55 E-value=26 Score=27.16 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=39.8
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhcCchHHHHHH
Q 021600 95 DIGMRLKGYPEEDVRNARKLVSSFIRAEEEVEERIEETAERGELTELVLMV 145 (310)
Q Consensus 95 eIg~rLK~yP~eev~kArklVssfIra~eevEe~IeeAae~gELteLvLmV 145 (310)
-||++=++|+.+++...++..--+.+++.-+++.+++..+....++.|..+
T Consensus 20 ~vGLrR~Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~~~~v~~~ 70 (83)
T PF13720_consen 20 LVGLRRRGFSKEEISALRRAYRILFRSGLTLEEALEELEEEYPDSPEVREI 70 (83)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCHHHHHH
Confidence 489999999999999999999999999988888888877744445555443
No 3
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=63.32 E-value=6.7 Score=34.99 Aligned_cols=77 Identities=27% Similarity=0.355 Sum_probs=52.3
Q ss_pred HHHHHHHhcccCCCCchHH-HHHHhhhhhccCCCCCCceeecCCCCCCcCCCCCCCCCCCCCcceeehhhHHHHHHHHHH
Q 021600 185 MRLLNDLLNMHDGFDDEGW-LKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKE 263 (310)
Q Consensus 185 MrLLNdLLNmhDGfdd~~W-Lk~crk~Mi~~FprEdpFtil~p~gFd~~~h~Gpi~~p~e~Dd~LLRvDFvREVDeLlkE 263 (310)
...|++.|...+|.+++.. ..+-|+++...||.-+.|++. .||.+.... ..+.- ...-=|+-+|+.++++|.+.
T Consensus 176 ~eyLe~~L~~~~~~~~~~~~~N~iR~~I~~~F~~~~cf~Lp-~P~~~~~~l-~~l~~---l~~~~L~~eF~~~l~~l~~~ 250 (260)
T PF02263_consen 176 QEYLEQALKPESGQDEEIQERNKIRECIRSCFPSRDCFTLP-HPGSDVDKL-QNLDG---LSLDDLDPEFVEQLDELVKY 250 (260)
T ss_dssp HHHHHHHCCSSTSSSCCCCCHHHHHHHHHHHECCEEEEEEE--SSCCCCC--TCGCC---CBGGGS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHhhHHHHHHHHHCCCCeEEEec-CCCchhhhc-cCccc---CChhhCCHHHHHHHHHHHHH
Confidence 3457778887888765543 356788899999999999955 556666542 22221 12223789999999999998
Q ss_pred HHH
Q 021600 264 VRL 266 (310)
Q Consensus 264 V~~ 266 (310)
+-+
T Consensus 251 i~~ 253 (260)
T PF02263_consen 251 IFS 253 (260)
T ss_dssp HHC
T ss_pred Hhc
Confidence 876
No 4
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=60.54 E-value=7.7 Score=32.88 Aligned_cols=23 Identities=26% Similarity=0.631 Sum_probs=20.1
Q ss_pred cCCCCCCCcHHHHHHHHHhhHHH
Q 021600 53 EGMPPEYYDDEWQAQRREKTKEL 75 (310)
Q Consensus 53 egmp~e~yd~EWqa~qRektkel 75 (310)
.|.+|+-+++|||++|-|+-++.
T Consensus 100 ~~~~P~T~t~Ewqea~~er~~~~ 122 (136)
T cd00922 100 YGPKPHTFTEEWQEAQLERMLDM 122 (136)
T ss_pred cCCCCCCcCHHHHHHHHHHHHHh
Confidence 68999999999999998877654
No 5
>PF12005 DUF3499: Protein of unknown function (DUF3499); InterPro: IPR021888 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 125 to 163 amino acids in length.
Probab=54.05 E-value=5.3 Score=34.37 Aligned_cols=41 Identities=32% Similarity=0.648 Sum_probs=30.9
Q ss_pred CCCceeecCCCCCCcCCCCCCCC-CCCCCcceeehhhHHHHH
Q 021600 218 EDPFTILAPAGFDIDKHQGPLPP-PPEVDAVLLRVDFVREVD 258 (310)
Q Consensus 218 EdpFtil~p~gFd~~~h~Gpi~~-p~e~Dd~LLRvDFvREVD 258 (310)
+|.=+|-+|.||+|-.|.++..+ ++++||.+.=.|=|||.-
T Consensus 46 ~Ha~rlTaP~GWevvR~~~~~~~~~p~~DDL~ALAeAVREa~ 87 (123)
T PF12005_consen 46 EHAERLTAPRGWEVVRLEGPFAPPPPDDDDLTALAEAVREAG 87 (123)
T ss_pred HHHhcccCCCCcEEEeccCCCCCCCCChhHHHHHHHHHHhhc
Confidence 34456889999999999999954 446687777777777653
No 6
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=53.40 E-value=12 Score=34.44 Aligned_cols=86 Identities=24% Similarity=0.358 Sum_probs=57.1
Q ss_pred cccCCCCchHHHHHHhhhhhccCCCCCCceeecCCCCCCcCCCCCCCCCCCCCcceeehhhHHHHHHHHHHHHHHHhh--
Q 021600 193 NMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQNE-- 270 (310)
Q Consensus 193 NmhDGfdd~~WLk~crk~Mi~~FprEdpFtil~p~gFd~~~h~Gpi~~p~e~Dd~LLRvDFvREVDeLlkEV~~eq~e-- 270 (310)
-|.+|.+|++|+..-++.+...+-.=.|=-|++.+|||.-... |. ...-|..+...++..+|...-.....
T Consensus 214 pL~~g~~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~D-----pl--g~~~lt~~~~~~~~~~~~~~a~~~~~~~ 286 (311)
T PF00850_consen 214 PLPPGTGDDEYLEAFEEILLPALEEFRPDLIVVSAGFDAHAGD-----PL--GGLNLTPEGYRELTRRLKSLAKRHCIPV 286 (311)
T ss_dssp EE-TTEBHHHHHHHHHHHHHHHHHHHT-SEEEEEE-STTBTTS-----TT---SEBB-HHHHHHHHHHHHTTHSHHSGCE
T ss_pred ccccccchHHHHHHHhhccccchhcccCcEEEEccCcccchhc-----cc--cCcCCCHHHHHHHHHHHHHHHHhcCCcE
Confidence 3567999999999998887655444467789999999976554 21 23457788899999988877653322
Q ss_pred -hhccCCCChHHHHHH
Q 021600 271 -AQTAEGLDPESVARR 285 (310)
Q Consensus 271 -~~~~~g~DpesVA~r 285 (310)
.--.-||++++++.-
T Consensus 287 v~vleGGY~~~~~~~~ 302 (311)
T PF00850_consen 287 VSVLEGGYNPESLARS 302 (311)
T ss_dssp EEEE-S-SSHHHHHHH
T ss_pred EEEECCCCChhHHHHH
Confidence 114567999998864
No 7
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=52.93 E-value=18 Score=28.10 Aligned_cols=52 Identities=23% Similarity=0.447 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHhcccCCCCchHHHHHHhhhhhccC---CCCCC
Q 021600 165 LDLLYRRVETEILKREATPAMRLLNDLLNMHDGFDDEGWLKECKKHMVDTF---PREDP 220 (310)
Q Consensus 165 LDLLyRRVEtEilkreAtPAMrLLNdLLNmhDGfdd~~WLk~crk~Mi~~F---prEdp 220 (310)
+|..|.--+.-+...+..-||..|=.++--+.||+++ .+||.||+.| +..||
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~----~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDD----AARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC----HHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc----HHHHHHHHHHHHcCCCCh
Confidence 3566677777788888889999999999999999887 5899999886 44454
No 8
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=50.60 E-value=1.4e+02 Score=26.59 Aligned_cols=33 Identities=42% Similarity=0.643 Sum_probs=21.9
Q ss_pred HHHHhhHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q 021600 67 QRREKTKELHRRRQEEDEEERRKIEEYRDIGMR 99 (310)
Q Consensus 67 ~qRektkel~r~r~~EeeEEer~~~eYReIg~r 99 (310)
.+|.|..+..+++++|..||+|...+=-.+-.+
T Consensus 70 k~r~k~~E~err~~EE~~EE~Rl~rere~~q~~ 102 (157)
T PF15236_consen 70 KRRQKQEEEERRRREEEEEEERLAREREELQRQ 102 (157)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777665554444
No 9
>PF06892 Phage_CP76: Phage regulatory protein CII (CP76); InterPro: IPR009679 This entry is represented by Bacteriophage 186, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny [].
Probab=48.92 E-value=91 Score=26.97 Aligned_cols=88 Identities=28% Similarity=0.325 Sum_probs=61.9
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHhhchHHHHHH---HHHHHhhcCchHHHHHHHHhhhhhhhcchhHHHHHHHHHH
Q 021600 92 EYRDIGMRLKGYPEEDVRNARKLVSSFIRAEEEVEER---IEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLL 168 (310)
Q Consensus 92 eYReIg~rLK~yP~eev~kArklVssfIra~eevEe~---IeeAae~gELteLvLmVIwnRLdlARrDdEkdAirsLDLL 168 (310)
-..++|.-.-.-|..+..+ .|+..++.+..++=+- +-+|.+.|.+|.---=.|..+. .+||++|.+|
T Consensus 70 ll~~lg~v~v~lP~~~~~~--~l~~~~l~~~a~~Gela~~a~ea~~dgrit~~er~~i~~~a--------~~ai~~l~ll 139 (162)
T PF06892_consen 70 LLAELGCVPVVLPKNEAAK--SLPERVLKATAEVGELAREALEALSDGRITRSERNRIIKEA--------NAAIRSLALL 139 (162)
T ss_pred HHHHCCCeeecCCcccccc--CHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH--------HHHHHHHHHH
Confidence 3456676665557777766 9999999887766554 4455588888865443333332 4789999999
Q ss_pred HHHHHHHHHhhccChhHHHHHHHh
Q 021600 169 YRRVETEILKREATPAMRLLNDLL 192 (310)
Q Consensus 169 yRRVEtEilkreAtPAMrLLNdLL 192 (310)
--.||.-+= ++|+|--=-|++
T Consensus 140 ~~~ve~R~~---~~p~~~~~~d~~ 160 (162)
T PF06892_consen 140 INDVEARTQ---ANPALAMAVDAL 160 (162)
T ss_pred HHHHHHHHc---cccHHHHHHHHh
Confidence 999998653 999997665554
No 10
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=48.54 E-value=52 Score=25.65 Aligned_cols=100 Identities=18% Similarity=0.152 Sum_probs=52.9
Q ss_pred HHHHHHhcccCCCCchHHHHHH-hhhhhccCCCCCCceeecCCCCCCcCCCCCCCCCCCCCcceeehhhHHHHHHHHHHH
Q 021600 186 RLLNDLLNMHDGFDDEGWLKEC-KKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEV 264 (310)
Q Consensus 186 rLLNdLLNmhDGfdd~~WLk~c-rk~Mi~~FprEdpFtil~p~gFd~~~h~Gpi~~p~e~Dd~LLRvDFvREVDeLlkEV 264 (310)
+|++.+-+..++.+...||.++ |..+++-+.+.....-......+-....+ .....++.+.+-+....+...++.+
T Consensus 50 ~l~~~~~~~~~~~~~~~~l~~i~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~~~~e~~~~l~~~l~~L 126 (179)
T PRK11924 50 RAWRKADLFNGKGSARTWLLTIARNVCYDLLRRRRREKAVLSDDALEPEFAE---TAETPEAALLAKDDLARIDRCLDAL 126 (179)
T ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHhcccccccCcccccccccCC---ccCCHHHHHhhHHHHHHHHHHHHhC
Confidence 3333333334677788898765 55566665554443221111111000000 1223355666677766676666665
Q ss_pred HHHHhhhh---ccCCCChHHHHHHHHH
Q 021600 265 RLEQNEAQ---TAEGLDPESVARRLKQ 288 (310)
Q Consensus 265 ~~eq~e~~---~~~g~DpesVA~rLkq 288 (310)
...+-..= -..|++.+.||..|--
T Consensus 127 ~~~~r~i~~l~~~~~~~~~eIA~~lgi 153 (179)
T PRK11924 127 PVKQREVFLLRYVEGLSYREIAEILGV 153 (179)
T ss_pred CHHHHHHhhHHHHcCCCHHHHHHHHCC
Confidence 55443322 4578999999988754
No 11
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=45.47 E-value=22 Score=34.21 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=44.9
Q ss_pred cChhHHHHHHHhcccCCCCch------HHHHHHhhhhhccCCCCCCceeecCCC-----CCCcCCCCCCCCCCCC---Cc
Q 021600 181 ATPAMRLLNDLLNMHDGFDDE------GWLKECKKHMVDTFPREDPFTILAPAG-----FDIDKHQGPLPPPPEV---DA 246 (310)
Q Consensus 181 AtPAMrLLNdLLNmhDGfdd~------~WLk~crk~Mi~~FprEdpFtil~p~g-----Fd~~~h~Gpi~~p~e~---Dd 246 (310)
-|++|.=|+.|-+|.||.--. .||..| -++||+.+.++| |+...|.+|-+++.++ ||
T Consensus 101 et~F~~~Lr~l~~~~~~~aw~R~pl~~~wl~~~---------~~~~f~~l~~p~h~~~~~~~~~~~~~~~~~~~~~~~eD 171 (276)
T KOG3005|consen 101 ETDFMYRLRILNHVLRSGAWARSPLTIRWLETD---------LETPFTCLSQPGHSELKFGKVTRKAPAVKRRRDMSFED 171 (276)
T ss_pred hhHHHHHHHHHHhhhcCCchhcCCccchhcchh---------hcCCccccCCCCcccccccccccccccccccccCchhh
Confidence 366777777777787776555 466554 478999999999 8999999999888775 55
Q ss_pred ce
Q 021600 247 VL 248 (310)
Q Consensus 247 ~L 248 (310)
-|
T Consensus 172 al 173 (276)
T KOG3005|consen 172 AL 173 (276)
T ss_pred cc
Confidence 55
No 12
>PF09350 DUF1992: Domain of unknown function (DUF1992); InterPro: IPR018961 This entry represents a family of proteins that may have a role in protein folding or as a chaperone. DnaJ is a member of the J-protein family, which are defined by the presence of a J domain that can regulate the activity of 70kDa heat-shock proteins []. Some of the proteins in this entry contain a J domain.
Probab=43.71 E-value=13 Score=28.36 Aligned_cols=17 Identities=47% Similarity=0.755 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhcCchHH
Q 021600 125 VEERIEETAERGELTEL 141 (310)
Q Consensus 125 vEe~IeeAae~gELteL 141 (310)
||++|++|.++|++..|
T Consensus 2 ~e~~I~~A~~~GeFdnL 18 (71)
T PF09350_consen 2 AERRIREAMARGEFDNL 18 (71)
T ss_pred HHHHHHHHHHcCCccCC
Confidence 68999999999999864
No 13
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=42.51 E-value=14 Score=31.51 Aligned_cols=19 Identities=26% Similarity=0.761 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHhhHHH
Q 021600 57 PEYYDDEWQAQRREKTKEL 75 (310)
Q Consensus 57 ~e~yd~EWqa~qRektkel 75 (310)
|+-+++|||++|.++-+++
T Consensus 104 P~T~~~Ew~ea~~~~m~~~ 122 (142)
T PF02936_consen 104 PHTFSKEWQEAQNERMLDM 122 (142)
T ss_dssp -GGGSHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHc
Confidence 7889999999999988764
No 14
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=40.93 E-value=8.9 Score=34.13 Aligned_cols=25 Identities=40% Similarity=0.883 Sum_probs=17.9
Q ss_pred eeecCCCCCCcCCCCCCCCCCCCCcce
Q 021600 222 TILAPAGFDIDKHQGPLPPPPEVDAVL 248 (310)
Q Consensus 222 til~p~gFd~~~h~Gpi~~p~e~Dd~L 248 (310)
+++|..||+| |.|.|.||...|=+|
T Consensus 90 ~L~fahGfni--~~~~i~pp~~vdV~m 114 (165)
T PF07991_consen 90 TLVFAHGFNI--HYGLIKPPKDVDVIM 114 (165)
T ss_dssp EEEESSSHHH--HCTTS---TTSEEEE
T ss_pred EEEeCCcchh--hcCcccCCCCCeEEE
Confidence 7889999999 899999996666544
No 15
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=36.79 E-value=58 Score=22.63 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 021600 102 GYPEEDVRNARKLVSSFIRAEEEVEERIEETA 133 (310)
Q Consensus 102 ~yP~eev~kArklVssfIra~eevEe~IeeAa 133 (310)
||...|+.+|-+-+.. ..+-.+++.|.+|.
T Consensus 14 Gy~~~e~~~av~~~~~--~~~~~~e~~ik~aL 43 (47)
T PF07499_consen 14 GYSKAEAQKAVSKLLE--KPGMDVEELIKQAL 43 (47)
T ss_dssp TS-HHHHHHHHHHHHH--STTS-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhc--CCCCCHHHHHHHHH
Confidence 7999999988777766 77788999998875
No 16
>PF01503 PRA-PH: Phosphoribosyl-ATP pyrophosphohydrolase; InterPro: IPR021130 Phosphoribosyl-ATP pyrophosphatase, 3.6.1.31 from EC catalyses the second step in the histidine biosynthetic pathway: 5-phosphoribosyl-ATP + H2O = 5-phosphoribosyl-AMP + PPi The Neurospora crassa enzyme also catalyzes the reactions of histidinol dehydrogenase (1.1.1.23 from EC) and phosphoribosyl-AMP cyclohydrolase (3.5.4.19 from EC). This entry also includes the Bacillus subtilis Cof proteins, which catalyze the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate []. ; PDB: 2A7W_K 3NL9_A 1YXB_D 1YVW_A 2YFD_C 2YFC_B 2YF3_C 2YF4_A 2YEU_E 2YF9_A ....
Probab=35.37 E-value=1.5e+02 Score=22.25 Aligned_cols=58 Identities=38% Similarity=0.424 Sum_probs=37.1
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhcCchHHHHHHHHhhhhhhhcchhHHHHHHHHHHHH
Q 021600 91 EEYRDIGMRLKGYPEEDVRNARKLVSSFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLARRDEEKDAIRSLDLLYR 170 (310)
Q Consensus 91 ~eYReIg~rLK~yP~eev~kArklVssfIra~eevEe~IeeAae~gELteLvLmVIwnRLdlARrDdEkdAirsLDLLyR 170 (310)
+-|+-|+.|.+..|+.-..+-..++ ..+-+||..|-++ |+..| |.+.-+-..-|++|-
T Consensus 3 ef~~~~~~~~~~~p~~~~~~l~~~~--~~kl~EE~~E~~~-A~~~~-------------------d~~~~~~e~aDlly~ 60 (83)
T PF01503_consen 3 EFHRTIDQRKKEAPEGSTKELLDLR--LKKLGEEAGELIE-AAKNG-------------------DKEEVADELADLLYH 60 (83)
T ss_dssp HHHHHHHHCCHSSTTTHHHHHHHHH--HHHHHHHHHHHHH-HHHCS-------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhCCCCCCcHHHHHHH--HHHHHHHHHHHHH-HHHcC-------------------CHHHHHHHHHHHHHH
Confidence 3467889999998888766655664 3444577766655 44444 444445556677774
No 17
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=34.60 E-value=2.2e+02 Score=25.28 Aligned_cols=31 Identities=32% Similarity=0.551 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh
Q 021600 104 PEEDVRNARKLVSSFIRAEEEVEERIEETAER 135 (310)
Q Consensus 104 P~eev~kArklVssfIra~eevEe~IeeAae~ 135 (310)
-.++|.+.....-+||- .|-+++.|++|.++
T Consensus 125 ~e~~V~~~~e~sk~FIT-~ENLd~~IeeALdn 155 (170)
T PF14943_consen 125 KEEEVRQLKEESKNFIT-RENLDAAIEEALDN 155 (170)
T ss_pred HHHHHHHHHHHhcCcCC-HHhHHHHHHHHHcC
Confidence 34566666666778885 58899999999886
No 18
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=34.31 E-value=24 Score=34.47 Aligned_cols=26 Identities=38% Similarity=0.723 Sum_probs=21.3
Q ss_pred ceeecCCCCCCcCCCCCCCCCCCCCcce
Q 021600 221 FTILAPAGFDIDKHQGPLPPPPEVDAVL 248 (310)
Q Consensus 221 Ftil~p~gFd~~~h~Gpi~~p~e~Dd~L 248 (310)
-.+.+.-||+| |.|.|.||...|=++
T Consensus 100 aiL~f~hgfni--~~~~i~pp~~vdv~m 125 (335)
T PRK13403 100 QMLLFSHGFNI--HFGQINPPSYVDVAM 125 (335)
T ss_pred CEEEECCCcce--ecCceeCCCCCeEEE
Confidence 36788999999 999999997766554
No 19
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=33.78 E-value=1.2e+02 Score=35.01 Aligned_cols=61 Identities=23% Similarity=0.323 Sum_probs=43.3
Q ss_pred HhhhccCCCHHHHHHHHHHHHH------------Hh-hchHHHHHHHHHHHhhcCc-----hHHHHHHHHhhhhhhhcc
Q 021600 96 IGMRLKGYPEEDVRNARKLVSS------------FI-RAEEEVEERIEETAERGEL-----TELVLMVIWNRLDLARRD 156 (310)
Q Consensus 96 Ig~rLK~yP~eev~kArklVss------------fI-ra~eevEe~IeeAae~gEL-----teLvLmVIwnRLdlARrD 156 (310)
+-..+.+||+.|..+--+.+-+ +. ...|+|+-.|-+|.-+|-. ..|-|.+-|||.|+||..
T Consensus 334 ~i~~~~~fs~~d~~~l~~~l~ec~~~k~LlTvf~~g~~g~edvD~aIL~aLlK~~ns~~~~dqL~LalaWnRvDIA~se 412 (1381)
T KOG3614|consen 334 LIRLTFEFSEFDAEKLIKWLRECLYRKELLTVFRLGEEGSEDVDVAILTALLKAQNSLSASDQLKLALAWNRVDIARSE 412 (1381)
T ss_pred hHHHHccCCHHHHHHHHHHHHHHhhhhhhhheeeccccccchhHHHHHHHHHHhcccCCcHHHHHHHHHhhhhhHHHHH
Confidence 3345567777765554333222 22 2347888899999999987 689999999999999986
No 20
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=27.51 E-value=49 Score=29.71 Aligned_cols=30 Identities=20% Similarity=0.447 Sum_probs=24.9
Q ss_pred CchHHHHHHhhhhhccCCCCCCceeecCCCCCCcC
Q 021600 199 DDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDK 233 (310)
Q Consensus 199 dd~~WLk~crk~Mi~~FprEdpFtil~p~gFd~~~ 233 (310)
++++..+++.+.|-+.||. -|.||||.|++
T Consensus 258 ~~~~~a~~i~~~l~~~~~~-----~~~~~~~~~~~ 287 (287)
T PRK14616 258 ENEADAEAAAEMMRARYRT-----NLTPPGFSMEQ 287 (287)
T ss_pred CCHHHHHHHHHHhHHhCcc-----ccCCCccccCC
Confidence 5678888999888888885 48999999974
No 21
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=26.41 E-value=59 Score=30.46 Aligned_cols=126 Identities=17% Similarity=0.322 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhccChhHH-----HHHHHhcccCCCCchHHHHHHhhhhhccCCCCCCceeecCCCCCCcCCCCCCCCCC
Q 021600 168 LYRRVETEILKREATPAMR-----LLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPP 242 (310)
Q Consensus 168 LyRRVEtEilkreAtPAMr-----LLNdLLNmhDGfdd~~WLk~crk~Mi~~FprEdpFtil~p~gFd~~~h~Gpi~~p~ 242 (310)
+|| ++-|--...||+.+ -|=|.++..+-|+-..|.+.|++.+-+..-+...=-+++=.||-+..-...+.+.|
T Consensus 35 vY~--~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~p 112 (287)
T TIGR00174 35 IYK--GMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNAIADITARGKIPLLVGGTGLYLKALLEGLSPTP 112 (287)
T ss_pred eee--eccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHcCCCCCC
Confidence 455 44566666677654 23345667777888999999999988887776655677777766544322232222
Q ss_pred CCCcceeehhhHHHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 021600 243 EVDAVLLRVDFVREVDALLKEVRLEQNEAQTAEGLDPESVARRLKQQEKQKTIRQVEALL 302 (310)
Q Consensus 243 e~Dd~LLRvDFvREVDeLlkEV~~eq~e~~~~~g~DpesVA~rLkqQEK~rtirqVe~Ll 302 (310)
..|. -+| .++++.+++.-.+.- -+.-.-.||++ |.++.-...+|.+|-+|=.+
T Consensus 113 ~~~~-~~r----~~l~~~~~~~g~~~l-~~~L~~~DP~~-a~~i~~nd~~Ri~RALEi~~ 165 (287)
T TIGR00174 113 SADK-LIR----EQLEILAEEQGWDFL-YNELKKVDPVA-AAKIHPNDTRRVQRALEVFY 165 (287)
T ss_pred CCCH-HHH----HHHHHHHHHcCHHHH-HHHHHhcCHHH-HHhcCCccHHHHHHHHHHHH
Confidence 2232 122 122222222211111 11223479986 77888889999999877543
No 22
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=25.97 E-value=67 Score=30.37 Aligned_cols=140 Identities=16% Similarity=0.208 Sum_probs=81.4
Q ss_pred hhhhcchhHHHHHHHHH--HHHHHHHHHHhhccChhHH-----HHHHHhcccCCCCchHHHHHHhhhhhccCCCCCCcee
Q 021600 151 DLARRDEEKDAIRSLDL--LYRRVETEILKREATPAMR-----LLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTI 223 (310)
Q Consensus 151 dlARrDdEkdAirsLDL--LyRRVEtEilkreAtPAMr-----LLNdLLNmhDGfdd~~WLk~crk~Mi~~FprEdpFti 223 (310)
+||++.- -|=|.|- +|| ++-|.--..|++=+ -|=|.++..+-|+--.|.+.|++.+-+.+-+...=-+
T Consensus 23 ~LA~~~~---eIIsaDS~QvYr--~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a~~~i~~i~~~gk~Pil 97 (300)
T PRK14729 23 HFPKGKA---EIINVDSIQVYK--EFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEALKIIKELRQQKKIPIF 97 (300)
T ss_pred HHHHhCC---cEEeccHHHHHC--CCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 4555532 2444442 466 55566666666632 3446778888899999999999999888888776677
Q ss_pred ecCCCCCCcCCCCCCCCCCCCCcceeehhhHHHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 021600 224 LAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQNEAQTAEGLDPESVARRLKQQEKQKTIRQVEALL 302 (310)
Q Consensus 224 l~p~gFd~~~h~Gpi~~p~e~Dd~LLRvDFvREVDeLlkEV~~eq~e~~~~~g~DpesVA~rLkqQEK~rtirqVe~Ll 302 (310)
++=.||-+..--..+...|..|+ -+|...-. .++..-. +.--+.-.-.||++ |.++.-...+|.+|-+|-..
T Consensus 98 vGGTglYi~all~gl~~~p~~~~-~~r~~~~~----~~~~~g~-~~l~~~L~~~DP~~-A~~i~pnd~~Ri~RALEv~~ 169 (300)
T PRK14729 98 VGGSAFYFKHLKYGLPSTPPVSS-KIRIYVNN----LFTLKGK-SYLLEELKRVDFIR-YESINKNDIYRIKRSLEVYY 169 (300)
T ss_pred EeCchHHHHHHHcCCCCCCCCCH-HHHHHHHH----HHHhcCH-HHHHHHHHhcCHHH-HhhCCcCCHHHHHHHHHHHH
Confidence 78888665543222332222232 22332222 1111111 00011234478976 56788888889888877543
No 23
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=25.35 E-value=1.8e+02 Score=26.07 Aligned_cols=41 Identities=27% Similarity=0.511 Sum_probs=32.5
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh
Q 021600 95 DIGMRLKGYPEEDVRNARKLVSSFIRAEEEVEERIEETAER 135 (310)
Q Consensus 95 eIg~rLK~yP~eev~kArklVssfIra~eevEe~IeeAae~ 135 (310)
-+|++-.+|+.+.+.+-+....+..+.+...++.+++..+.
T Consensus 196 ~~g~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~ 236 (262)
T PRK05289 196 LVGLKRRGFSREEIHALRRAYKLLYRSGLTLEEALEELAEE 236 (262)
T ss_pred hhhhhhCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHhh
Confidence 46777788899999888888888888888888777766543
No 24
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=25.16 E-value=1.7e+02 Score=26.54 Aligned_cols=42 Identities=17% Similarity=0.394 Sum_probs=32.9
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhc
Q 021600 95 DIGMRLKGYPEEDVRNARKLVSSFIRAEEEVEERIEETAERG 136 (310)
Q Consensus 95 eIg~rLK~yP~eev~kArklVssfIra~eevEe~IeeAae~g 136 (310)
.+|++=++|+.++...-++....+.+++--.++.+++..+..
T Consensus 192 ~vgl~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (255)
T PRK12461 192 AVGLRRRGFSSRAIRALKRAYKIIYRSGLSVQQAVAELELQQ 233 (255)
T ss_pred hhhhhhcCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 478888888888888888888888888877777777766543
No 25
>PRK10203 hypothetical protein; Provisional
Probab=25.03 E-value=39 Score=28.76 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhcCchHH
Q 021600 124 EVEERIEETAERGELTEL 141 (310)
Q Consensus 124 evEe~IeeAae~gELteL 141 (310)
=||..|.+|.++|++..|
T Consensus 7 ~~E~~I~eA~~~GefdnL 24 (122)
T PRK10203 7 WAERHILEAQRKGEFDNL 24 (122)
T ss_pred HHHHHHHHHHHcCCccCC
Confidence 478999999999999765
No 26
>PLN02840 tRNA dimethylallyltransferase
Probab=24.84 E-value=87 Score=31.28 Aligned_cols=107 Identities=18% Similarity=0.219 Sum_probs=69.1
Q ss_pred HHHHhcccCCCCchHHHHHHhhhhhccCCCCCCceeecCCCCCCcCCCCCCC-CCCCCCcceeehhhHHHHHHHHHHHHH
Q 021600 188 LNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLP-PPPEVDAVLLRVDFVREVDALLKEVRL 266 (310)
Q Consensus 188 LNdLLNmhDGfdd~~WLk~crk~Mi~~FprEdpFtil~p~gFd~~~h~Gpi~-~p~e~Dd~LLRvDFvREVDeLlkEV~~ 266 (310)
|=|.++..+-|+-..|.+.|++.+-+.+-+...=-|++=.||-+..-.-.+. .|..+.+ .-.++.+.+++...
T Consensus 80 lidil~p~e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~------~r~~l~~~l~~~~~ 153 (421)
T PLN02840 80 LIDILHPSDDYSVGAFFDDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPE------ITSEVWSELVDFQK 153 (421)
T ss_pred eEeecCCCCceeHHHHHHHHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHH------HHHHHHHHHHHhcc
Confidence 4466777788889999999999999999988887888888876654322222 3322221 22234444444321
Q ss_pred ----HHhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 021600 267 ----EQNEAQTAEGLDPESVARRLKQQEKQKTIRQVEALL 302 (310)
Q Consensus 267 ----eq~e~~~~~g~DpesVA~rLkqQEK~rtirqVe~Ll 302 (310)
+.-......-.|| -|.++--...+|.+|-+|-..
T Consensus 154 ~~g~~~l~~~Ll~~~DP--~A~~i~pnD~~Ri~RALEV~~ 191 (421)
T PLN02840 154 NGDWDAAVELVVNAGDP--KARSLPRNDWYRLRRSLEIIK 191 (421)
T ss_pred ccCHHHHHHHHHhccCc--HHHhcCCCcHHHHHHHHHHHH
Confidence 0011112344699 788999999999999888654
No 27
>PF14854 LURAP: Leucine rich adaptor protein
Probab=24.32 E-value=29 Score=30.14 Aligned_cols=46 Identities=20% Similarity=0.419 Sum_probs=32.7
Q ss_pred hHHHHHHHhcccCCCCchHHHHHHhhhhhccCCCCCCceeecCCCCCCcCCC
Q 021600 184 AMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQ 235 (310)
Q Consensus 184 AMrLLNdLLNmhDGfdd~~WLk~crk~Mi~~FprEdpFtil~p~gFd~~~h~ 235 (310)
=|+||.+|+-+|+|...-+||=.=|-.. . .|=+-+.+.++.+-.++
T Consensus 38 DvkLL~QL~~vNEsIe~~KWlmEEr~~l---~---s~~SSlt~S~~SL~~s~ 83 (121)
T PF14854_consen 38 DVKLLQQLLAVNESIEEVKWLMEERGAL---T---SRCSSLTSSLYSLLESQ 83 (121)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhcc---c---CCcccccccccccccCC
Confidence 3799999999999999999997665443 2 23344556666655444
No 28
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=22.65 E-value=3.6e+02 Score=21.74 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=32.7
Q ss_pred HHHHHhhHHHHHhhhhhhHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHhh
Q 021600 66 AQRREKTKELHRRRQEEDEEERRKIEEYRDIGMRLKGYPEEDVRNARKLVSSFIR 120 (310)
Q Consensus 66 a~qRektkel~r~r~~EeeEEer~~~eYReIg~rLK~yP~eev~kArklVssfIr 120 (310)
.++.+-.+-+...+++-+.|.++...+.|.=--.|+.--.+-..+|-++|.++||
T Consensus 47 eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a~~k~~~av~~~~~~~~ 101 (103)
T PRK08404 47 KAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEENFETAVSEAIKLIR 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444455555555556666666666655556666666666666666666665
No 29
>PF07768 PVL_ORF50: PVL ORF-50-like family; InterPro: IPR011688 This entry is represented by the Bacteriophage 69, Orf58. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of sequences found in both bacteria and bacteriophages. This region is approximately 130 residues long and in some cases is found as part of the PVL (Panton-Valentine leukocidin) group of genes, which encode a member of the leukocidin group of bacterial toxins that kill leukocytes by creation of pores in the cell membrane []. PVL appears to be a virulence factor associated with a number of human diseases [].
Probab=22.15 E-value=1.3e+02 Score=25.53 Aligned_cols=61 Identities=23% Similarity=0.429 Sum_probs=30.1
Q ss_pred hhhhhhccccchhhccCC--CCCCCcHHHHHHHHHh---hHHHHH---hhhhhhHHHHHHHHHHHHHhhhccCCCHH
Q 021600 38 GVVLRRCTDKEETLLEGM--PPEYYDDEWQAQRREK---TKELHR---RRQEEDEEERRKIEEYRDIGMRLKGYPEE 106 (310)
Q Consensus 38 ~~~lrr~~~k~e~~legm--p~e~yd~EWqa~qRek---tkel~r---~r~~EeeEEer~~~eYReIg~rLK~yP~e 106 (310)
+++..|-. ++-..-|-+ |-..+..||...+.-+ +...+| +.+.+++|.+|+ --.|-++||-
T Consensus 27 ~~I~~Rvk-kGw~~dEai~ap~g~~~kE~~e~k~~~~l~~e~~ERe~~r~rr~e~el~Rk-------KPhLf~vPQk 95 (118)
T PF07768_consen 27 GIIRKRVK-KGWEFDEAIEAPYGMRRKEYKERKKMERLEQERRERELERKRRKEQELRRK-------KPHLFNVPQK 95 (118)
T ss_pred HHHHHHHH-cCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CchhhcCccc
Confidence 55555554 443333333 4455678888766433 322333 233333344444 3457777764
No 30
>PF05648 PEX11: Peroxisomal biogenesis factor 11 (PEX11)
Probab=21.32 E-value=3.8e+02 Score=22.08 Aligned_cols=60 Identities=22% Similarity=0.397 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhc-cCCCChHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 021600 251 VDFVREVDALLKEVRLEQNEAQT-AEGLDPESV-ARRLKQQEKQKTIRQVEALLDLAINLKW 310 (310)
Q Consensus 251 vDFvREVDeLlkEV~~eq~e~~~-~~g~DpesV-A~rLkqQEK~rtirqVe~Ll~lA~~LKW 310 (310)
+++++-+-+|..-.+.+....+. ..+-+++.+ -..++.|-....+..|++++|+.+++.|
T Consensus 135 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~lv~~~~D~~~~~~~ 196 (223)
T PF05648_consen 135 LSLVRDLRELRRLRQKERSLKKQLKEKDENEEEKLKKLRKERRALLLDLVKNLCDLIIAVHW 196 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777666655554433332 222233322 2467777788888999999999877654
No 31
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.28 E-value=2.2e+02 Score=27.38 Aligned_cols=83 Identities=17% Similarity=0.277 Sum_probs=53.7
Q ss_pred cCCCCchHHHHHHhhhhhccCCCCCCceeecCCCCCCcCCCCCCCCCCCCCcceeehhhHHHHHHHHHHHHHHH---hhh
Q 021600 195 HDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQ---NEA 271 (310)
Q Consensus 195 hDGfdd~~WLk~crk~Mi~~FprEdpFtil~p~gFd~~~h~Gpi~~p~e~Dd~LLRvDFvREVDeLlkEV~~eq---~e~ 271 (310)
=+|.+|+.|++--+......--.-.|=-|++-+|||.-..- |+ -..-|-..+.+.....+..+.... .-.
T Consensus 215 p~g~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~D-----pl--~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~ 287 (340)
T COG0123 215 PPGTGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGD-----PL--GRLNLTEEGYAKIGRAVRKLAEGYGGPVVA 287 (340)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCC-----cc--ceeecCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 46899999999999963333333457789999999976554 11 122344566777777777776532 112
Q ss_pred hccCCCChHHHHH
Q 021600 272 QTAEGLDPESVAR 284 (310)
Q Consensus 272 ~~~~g~DpesVA~ 284 (310)
--.-||+.++|+.
T Consensus 288 vleGGY~~~~l~~ 300 (340)
T COG0123 288 VLEGGYNLDALAR 300 (340)
T ss_pred EecCCCChHHHHH
Confidence 2456799986654
No 32
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.73 E-value=6.4e+02 Score=24.05 Aligned_cols=60 Identities=32% Similarity=0.357 Sum_probs=38.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHhhh---ccCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhcC
Q 021600 77 RRRQEEDEEERRKIEEYRDIGMR---LKGYPEEDVRNARKLVSSFIRAEEEVEERIEETAERGE 137 (310)
Q Consensus 77 r~r~~EeeEEer~~~eYReIg~r---LK~yP~eev~kArklVssfIra~eevEe~IeeAae~gE 137 (310)
|.+++++|.+.+..++-+.=..+ -|.--+++|..+-.=+++||- -|.+|-+|++|.++--
T Consensus 130 Rla~~~~E~~~~i~ee~~~~~e~~~a~k~qae~eVl~~iersknfIT-ReNLea~Ie~AL~~p~ 192 (227)
T KOG4691|consen 130 RLAQEEREQEQRIAEEQARKAEEVQAWKQQAEREVLQLIERSKNFIT-RENLEARIEAALDSPK 192 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHhHHHHHHHHHcCcc
Confidence 44445554444444443322222 234456788888888999996 4789999999988753
No 33
>COG4755 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.10 E-value=1.6e+02 Score=26.49 Aligned_cols=92 Identities=26% Similarity=0.400 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhHHHHHhhhhhhHHHHHHHHHH------HHHhhhccCC-------------CHH---HHH-----HHHHH
Q 021600 62 DEWQAQRREKTKELHRRRQEEDEEERRKIEEY------RDIGMRLKGY-------------PEE---DVR-----NARKL 114 (310)
Q Consensus 62 ~EWqa~qRektkel~r~r~~EeeEEer~~~eY------ReIg~rLK~y-------------P~e---ev~-----kArkl 114 (310)
|+|-.-|...-+++...-.++.-+ -|.-.-| --+..-||+| |.| ||. -|-+|
T Consensus 21 e~WvklQk~~l~~lk~~~~~~k~~-DRLdLi~~~r~af~hm~rtLKaFd~WLqdP~v~s~mPremL~dv~~t~~e~~~~l 99 (151)
T COG4755 21 EQWVKLQKRQLKELKSHGEHMKVA-DRLDLIYSARAAFGHMARTLKAFDSWLQDPVVTSVMPREMLRDVESTLREVAIKL 99 (151)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhCcHHHHHHHHHHHHHHHHHH
Confidence 689888887777877665555444 4444333 3456667766 444 332 25566
Q ss_pred HHHHhhchHHHHHHHHHHHhhcCchHHHHHHHHhhhhhhh
Q 021600 115 VSSFIRAEEEVEERIEETAERGELTELVLMVIWNRLDLAR 154 (310)
Q Consensus 115 VssfIra~eevEe~IeeAae~gELteLvLmVIwnRLdlAR 154 (310)
+--=||--.++.|+|++++..|.|.+++...|-.|-.--|
T Consensus 100 ielDIrHTSq~kelisk~srEGkl~pvl~~~~~~~~~~~r 139 (151)
T COG4755 100 IELDIRHTSQYKELISKFSREGKLPPVLMLYIQQRPQAPR 139 (151)
T ss_pred HHHhHHhHHHHHHHHHHHhhcCCCCchHHhhhhcccCchH
Confidence 6667899999999999999999999988777766654433
Done!