Query 021600
Match_columns 310
No_of_seqs 15 out of 17
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 06:30:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3anw_A GINS51, putative unchar 48.8 44 0.0015 27.9 6.6 50 251-304 24-73 (188)
2 1zz1_A Histone deacetylase-lik 39.0 29 0.001 32.0 4.4 85 194-285 232-320 (369)
3 1c3p_A Protein (HDLP (histone 37.8 43 0.0015 30.9 5.3 84 194-285 222-305 (375)
4 4ido_A Atlastin-1; GTPase, GTP 36.7 23 0.00079 33.9 3.4 72 184-266 232-306 (457)
5 2vqm_A HD4, histone deacetylas 35.5 24 0.00081 33.0 3.2 85 196-285 256-340 (413)
6 3exa_A TRNA delta(2)-isopenten 34.4 7.7 0.00026 35.7 -0.2 106 190-301 64-169 (322)
7 2wpv_A GET4, UPF0363 protein Y 33.9 2.4E+02 0.0083 25.3 9.5 94 121-220 12-110 (312)
8 1v54_D Cytochrome C oxidase su 31.4 24 0.00081 29.7 2.3 23 53-75 104-126 (147)
9 2y69_D Cytochrome C oxidase su 31.2 21 0.00071 30.8 1.9 23 53-75 126-148 (169)
10 3eph_A TRNA isopentenyltransfe 21.7 53 0.0018 31.0 3.0 97 192-301 65-167 (409)
No 1
>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=48.77 E-value=44 Score=27.95 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021600 251 VDFVREVDALLKEVRLEQNEAQTAEGLDPESVARRLKQQEKQKTIRQVEALLDL 304 (310)
Q Consensus 251 vDFvREVDeLlkEV~~eq~e~~~~~g~DpesVA~rLkqQEK~rtirqVe~Ll~l 304 (310)
=||-++|.+.+++++.+-..+.+. |.|+..+++.++-....+.+++|.++
T Consensus 24 ~~FY~~v~~yI~~L~~~~~~~~~~----~~~~e~~~~~~el~~~~~~~~~i~~~ 73 (188)
T 3anw_A 24 EDFYVEFDSLIKALKLSAESSRER----GEDVEERLYLAQLKIAESLMKEIIKL 73 (188)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc----cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999865444331 34555677777665555566666543
No 2
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=39.04 E-value=29 Score=31.99 Aligned_cols=85 Identities=14% Similarity=0.253 Sum_probs=57.7
Q ss_pred ccCCCCchHHHHHHhhhhhccCCCCCCceeecCCCCCCcCCCCCCCCCCCCCcceeehhhHHHHHHHHHHHHHHHhhh--
Q 021600 194 MHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQNEA-- 271 (310)
Q Consensus 194 mhDGfdd~~WLk~crk~Mi~~FprEdpFtil~p~gFd~~~h~Gpi~~p~e~Dd~LLRvDFvREVDeLlkEV~~eq~e~-- 271 (310)
|-+|.+|++|+.--+..++...-.-.|=-|++-+|||.-..- |+ ...-|..+..+++++.|.++-......
T Consensus 232 L~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~D-----pL--g~l~lt~~g~~~~~~~l~~~a~~~~~g~v 304 (369)
T 1zz1_A 232 LPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLD-----PL--ARMMVTADGFRQMARRTIDCAADICDGRI 304 (369)
T ss_dssp ECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTC-----TT--CCCBBCHHHHHHHHHHHHHHHHHHSTTCE
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCC-----CC--CCcccCHHHHHHHHHHHHHHHHHhCCCCE
Confidence 458999999999998866554444467789999999975431 11 234466788899999998875432221
Q ss_pred --hccCCCChHHHHHH
Q 021600 272 --QTAEGLDPESVARR 285 (310)
Q Consensus 272 --~~~~g~DpesVA~r 285 (310)
--.-||++++++.-
T Consensus 305 v~vleGGY~~~~l~~~ 320 (369)
T 1zz1_A 305 VFVQEGGYSPHYLPFC 320 (369)
T ss_dssp EEEECCCCCTTTHHHH
T ss_pred EEEECCCCCccHHHHH
Confidence 24567998866643
No 3
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=37.80 E-value=43 Score=30.94 Aligned_cols=84 Identities=19% Similarity=0.115 Sum_probs=56.7
Q ss_pred ccCCCCchHHHHHHhhhhhccCCCCCCceeecCCCCCCcCCCCCCCCCCCCCcceeehhhHHHHHHHHHHHHHHHhhhhc
Q 021600 194 MHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQNEAQT 273 (310)
Q Consensus 194 mhDGfdd~~WLk~crk~Mi~~FprEdpFtil~p~gFd~~~h~Gpi~~p~e~Dd~LLRvDFvREVDeLlkEV~~eq~e~~~ 273 (310)
|-+|.+|++|+.--+..+....-.=.|=-|++-+|||.-..- |+ ...-|..+..+++.+.|+++-.. --.--
T Consensus 222 L~~g~~D~~yl~a~~~~l~p~l~~F~PdlIvvsaG~Da~~~D-----pL--g~l~lt~~g~~~~~~~l~~~a~~-vv~vl 293 (375)
T 1c3p_A 222 LPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLED-----YL--SKFNLSNVAFLKAFNIVREVFGE-GVYLG 293 (375)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHHCCCSEEEEECCSTTBTTC-----TT--CSCCBCHHHHHHHHHHHHHHHCS-CEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCC-----CC--CCcccCHHHHHHHHHHHHHhccc-eEEEE
Confidence 568999999999888876533333356689999999974321 11 23445677788888888877531 22224
Q ss_pred cCCCChHHHHHH
Q 021600 274 AEGLDPESVARR 285 (310)
Q Consensus 274 ~~g~DpesVA~r 285 (310)
.-||++.+|+.-
T Consensus 294 eGGY~~~~l~~~ 305 (375)
T 1c3p_A 294 GGGYHPYALARA 305 (375)
T ss_dssp CCCCCHHHHHHH
T ss_pred CCCCChHHHHHH
Confidence 567999998743
No 4
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=36.72 E-value=23 Score=33.90 Aligned_cols=72 Identities=18% Similarity=0.405 Sum_probs=53.6
Q ss_pred hHHHHHHHhcccCCCCchHHHHHHhhhhhccCCCCCCceeecCCCCCCc---CCCCCCCCCCCCCcceeehhhHHHHHHH
Q 021600 184 AMRLLNDLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDID---KHQGPLPPPPEVDAVLLRVDFVREVDAL 260 (310)
Q Consensus 184 AMrLLNdLLNmhDGfdd~~WLk~crk~Mi~~FprEdpFtil~p~gFd~~---~h~Gpi~~p~e~Dd~LLRvDFvREVDeL 260 (310)
....|...|..-+|...+ +++-|+++...||.-+-|++.-|. -+.. +..|++ ++ |+=+|+..|++|
T Consensus 232 ~~eyLe~~L~~~~g~~~~--~~~iR~~I~~~F~~~~Cf~lp~P~-~~~~~~~~~~~~l------~d--L~peF~~ql~~l 300 (457)
T 4ido_A 232 GAKFLEKRLKVSGNQHEE--LQNVRKHIHSCFTNISCFLLPHPG-LKVATNPNFDGKL------KE--IDDEFIKNLKIL 300 (457)
T ss_dssp HHHHHHHHHCCCTTSCHH--HHHHHHHHHHHEEEEEEEECCCCC-HHHHHCTTCCCCG------GG--SCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCHH--HHHHHHHHHHhCCCCcEEEcCCCc-hhhhhchhhhcCh------hh--CCHHHHHHHHHH
Confidence 456788888888886544 577899999999999999988773 3221 112433 22 678999999999
Q ss_pred HHHHHH
Q 021600 261 LKEVRL 266 (310)
Q Consensus 261 lkEV~~ 266 (310)
.+-|-+
T Consensus 301 ~~~I~~ 306 (457)
T 4ido_A 301 IPWLLS 306 (457)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 999975
No 5
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=35.51 E-value=24 Score=32.97 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=50.4
Q ss_pred CCCCchHHHHHHhhhhhccCCCCCCceeecCCCCCCcCCCCCCCCCCCCCcceeehhhHHHHHHHHHHHHHHHhhhhccC
Q 021600 196 DGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQNEAQTAE 275 (310)
Q Consensus 196 DGfdd~~WLk~crk~Mi~~FprEdpFtil~p~gFd~~~h~Gpi~~p~e~Dd~LLRvDFvREVDeLlkEV~~eq~e~~~~~ 275 (310)
+|..|++|+...+..++...-.=.|=-|++-+|||.-.+. |- | -...-|-.+....+.+.|..+-.----.--.-
T Consensus 256 ~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d-~D--~--lg~~~lt~~~~~~~~~~l~~~a~~~~v~vleG 330 (413)
T 2vqm_A 256 PPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGH-PT--P--LGGYNLSARCFGYLTKQLMGLAGGRIVLALEG 330 (413)
T ss_dssp SCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSC-TT--T--TCCCCBCHHHHHHHHHHHHTSGGGCEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCC-CC--C--CCCcccCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 5677999999999877544333366689999999974321 10 0 01222344566777777765421000011345
Q ss_pred CCChHHHHHH
Q 021600 276 GLDPESVARR 285 (310)
Q Consensus 276 g~DpesVA~r 285 (310)
||++.+||.-
T Consensus 331 GY~~~~l~~~ 340 (413)
T 2vqm_A 331 GHDLTAICDA 340 (413)
T ss_dssp CCCHHHHHHH
T ss_pred CCChHHHHHH
Confidence 7998887754
No 6
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=34.42 E-value=7.7 Score=35.71 Aligned_cols=106 Identities=12% Similarity=0.199 Sum_probs=63.1
Q ss_pred HHhcccCCCCchHHHHHHhhhhhccCCCCCCceeecCCCCCCcCCCCCCCCCCCCCcceeehhhHHHHHHHHHHHHHHHh
Q 021600 190 DLLNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQGPLPPPPEVDAVLLRVDFVREVDALLKEVRLEQN 269 (310)
Q Consensus 190 dLLNmhDGfdd~~WLk~crk~Mi~~FprEdpFtil~p~gFd~~~h~Gpi~~p~e~Dd~LLRvDFvREVDeLlkEV~~eq~ 269 (310)
|.++..+-|+-..|.+.|++.+-+.+-+...--+++=.||-+..=-..+..|+.+.|.-+| .++.+.+++.-.+.-
T Consensus 64 d~~~~~e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R----~~l~~~~~~~g~~~L 139 (322)
T 3exa_A 64 DIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYR----HELEAFVNSYGVQAL 139 (322)
T ss_dssp SCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHH----HHHHHHHHHSCHHHH
T ss_pred ccCChhhhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHH----HHHHHHHHhcCHHHH
Confidence 4456678899999999999999888887766567777776654433223444442221122 122222222111000
Q ss_pred hhhccCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 021600 270 EAQTAEGLDPESVARRLKQQEKQKTIRQVEAL 301 (310)
Q Consensus 270 e~~~~~g~DpesVA~rLkqQEK~rtirqVe~L 301 (310)
-..-...||++ |.++.-...+|.+|-+|=.
T Consensus 140 -~~~L~~~DP~~-A~~i~pnd~~Ri~RALEV~ 169 (322)
T 3exa_A 140 -HDKLSKIDPKA-AAAIHPNNYRRVIRALEII 169 (322)
T ss_dssp -HHHHHTTCHHH-HTTSCTTCHHHHHHHHHHH
T ss_pred -HHHHHhhCHHH-HhhcCcccHHHHHHHHHHH
Confidence 11223478886 7778888888999887754
No 7
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=33.85 E-value=2.4e+02 Score=25.33 Aligned_cols=94 Identities=13% Similarity=0.191 Sum_probs=64.8
Q ss_pred chHHHHHHHHHHHhhcCchHHHHH--HHHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhccChhHHHHH---HHhccc
Q 021600 121 AEEEVEERIEETAERGELTELVLM--VIWNRLDLARRDEEKDAIRSLDLLYRRVETEILKREATPAMRLLN---DLLNMH 195 (310)
Q Consensus 121 a~eevEe~IeeAae~gELteLvLm--VIwnRLdlARrDdEkdAirsLDLLyRRVEtEilkreAtPAMrLLN---dLLNmh 195 (310)
.-+.+..++++..+.|..=|--=| +|-||.=-+.+-+ .|+||||-=...=+-..+-+-|--|.. |-++-.
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~-----eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~ 86 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYE-----HAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA 86 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc
Confidence 356678888999999988776544 5788876665544 588999987776555566555544433 444444
Q ss_pred CCCCchHHHHHHhhhhhccCCCCCC
Q 021600 196 DGFDDEGWLKECKKHMVDTFPREDP 220 (310)
Q Consensus 196 DGfdd~~WLk~crk~Mi~~FprEdp 220 (310)
.=--+++|+.+-. .++..||+++|
T Consensus 87 ~~~~~~~~~~rl~-~l~~~~p~~~~ 110 (312)
T 2wpv_A 87 EVKVDDISVARLV-RLIAELDPSEP 110 (312)
T ss_dssp TCCCSHHHHHHHH-HHHTTCCTTCT
T ss_pred CCCCCHHHHHHHH-HHHHHCCCCCc
Confidence 3344678988887 68888988775
No 8
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=31.44 E-value=24 Score=29.73 Aligned_cols=23 Identities=22% Similarity=0.634 Sum_probs=18.9
Q ss_pred cCCCCCCCcHHHHHHHHHhhHHH
Q 021600 53 EGMPPEYYDDEWQAQRREKTKEL 75 (310)
Q Consensus 53 egmp~e~yd~EWqa~qRektkel 75 (310)
.|=+|+-+++|||++|-|+-+++
T Consensus 104 ~~p~P~T~~~Ewqeaq~erm~~~ 126 (147)
T 1v54_D 104 YGPIPHTFEEEWVAKQTKRMLDM 126 (147)
T ss_dssp CCCCCGGGSHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCHHHHHHHHHHHHHc
Confidence 46688899999999998887654
No 9
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=31.24 E-value=21 Score=30.78 Aligned_cols=23 Identities=22% Similarity=0.634 Sum_probs=19.0
Q ss_pred cCCCCCCCcHHHHHHHHHhhHHH
Q 021600 53 EGMPPEYYDDEWQAQRREKTKEL 75 (310)
Q Consensus 53 egmp~e~yd~EWqa~qRektkel 75 (310)
.|=+|+-+++|||++|-|+-+++
T Consensus 126 ~~p~P~T~~~Ewqeaq~erml~~ 148 (169)
T 2y69_D 126 YGPIPHTFEEEWVAKQTKRMLDM 148 (169)
T ss_dssp CCCCCGGGSHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCHHHHHHHHHHHHHc
Confidence 46688899999999998887654
No 10
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=21.70 E-value=53 Score=31.00 Aligned_cols=97 Identities=11% Similarity=0.213 Sum_probs=61.0
Q ss_pred hcccCCCCchHHHHHHhhhhhccCCCCCCceeecCCCCCCcCCC-CCCCCCCCCCcceeehhhHHH-----HHHHHHHHH
Q 021600 192 LNMHDGFDDEGWLKECKKHMVDTFPREDPFTILAPAGFDIDKHQ-GPLPPPPEVDAVLLRVDFVRE-----VDALLKEVR 265 (310)
Q Consensus 192 LNmhDGfdd~~WLk~crk~Mi~~FprEdpFtil~p~gFd~~~h~-Gpi~~p~e~Dd~LLRvDFvRE-----VDeLlkEV~ 265 (310)
+...+.|+-..|++.|++.+-+.+-+...--|++=.||-+..-- |-...|+..|.. .|-.. .. .++|.+++
T Consensus 65 ~~~~~~~s~~~F~~~a~~~i~~i~~~g~~pilVGGTglYi~aLl~gl~~~~~~~~~~-~r~~~-~~~~~~g~~~L~~~L- 141 (409)
T 3eph_A 65 VDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKL-TRKQL-DILESTDPDVIYNTL- 141 (409)
T ss_dssp BCTTSCCCHHHHHHHHHHHHHHHHTTTCEEEEECSCGGGGGGGGTCSCCCSSSCCCC-CHHHH-HHHTCSSSSSHHHHH-
T ss_pred cChHhHhhHHHHHHHHHHHHHHHHhcCCCEEEECChHHHHHHHHccccCCCCccCHH-HHHHH-HHHhccCHHHHHHHH-
Confidence 44556788899999999999988888776667778887765543 434444333332 22111 00 11112222
Q ss_pred HHHhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 021600 266 LEQNEAQTAEGLDPESVARRLKQQEKQKTIRQVEAL 301 (310)
Q Consensus 266 ~eq~e~~~~~g~DpesVA~rLkqQEK~rtirqVe~L 301 (310)
...||++ |.++.-...+|.+|-+|=.
T Consensus 142 ---------~~~DP~~-A~rihpnd~~Ri~RALEV~ 167 (409)
T 3eph_A 142 ---------VKCDPDI-ATKYHPNDYRRVQRMLEIY 167 (409)
T ss_dssp ---------HHSCHHH-HTTSCTTCHHHHHHHHHHH
T ss_pred ---------HHhCHHH-HHhcCcccHHHHHHHHHHH
Confidence 1268876 7788888889999887754
Done!