BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021601
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 144/234 (61%), Gaps = 12/234 (5%)
Query: 38 TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGK 97
+GSGF S + Y G+F A+IKL + YTAGV+ +FY+SN + HDEID EFLG I GK
Sbjct: 47 SGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGK 106
Query: 98 DWRIQTNIYGNGSTS---IGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFK 154
+ +QTN++ GS IGRE R +LWFDP+ D+H Y+I WT S+IIF++D +PIR +
Sbjct: 107 PYTLQTNVFIEGSGDYNIIGRELRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYP 166
Query: 155 RTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIE 214
R + FP +PM +Y ++WD S WAT GKY+ +Y+Y P+V ++ DF L C+
Sbjct: 167 RKSD--ATFPLRPMWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTV---- 220
Query: 215 QTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 268
+ +S C+ + VS +S Q ME ++ +M Y+YC D R EC
Sbjct: 221 EAASSCN---PASVSPYGQLSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 197 bits (500), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 144/234 (61%), Gaps = 12/234 (5%)
Query: 38 TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGK 97
+GSGF S + Y G+F A+IKL + YTAGV+ +FY+SN + HDEID EFLG I GK
Sbjct: 50 SGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGK 109
Query: 98 DWRIQTNIYGNGSTS---IGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFK 154
+ +QTN++ GS IGRE R +LWFDP+ D+H Y+I WT S+IIF++D +PIR +
Sbjct: 110 PYTLQTNVFIEGSGDYNIIGREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYP 169
Query: 155 RTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIE 214
R + FP +P+ +Y ++WD S WAT GKY+ +Y+Y P+V ++ DF L C+
Sbjct: 170 RKSD--ATFPLRPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTV---- 223
Query: 215 QTSSKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 268
+ +S C+ + VS +S Q ME ++ +M Y+YC D R EC
Sbjct: 224 EAASSCN---PASVSPYGQLSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 274
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 193 bits (491), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 142/231 (61%), Gaps = 11/231 (4%)
Query: 38 TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGK 97
+GSGF S + Y G+F A+IKL + YTAGV+ +FY+SN + HDEID EFLG I GK
Sbjct: 48 SGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGK 107
Query: 98 DWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTA 157
+ +QTN++ GS RE R +LWFDP+ D+H Y+I WT S+IIF++D +PIR + R +
Sbjct: 108 PYTLQTNVFIEGSGD--REMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKS 165
Query: 158 SMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTS 217
FP +P+ +Y ++WD S WAT GKY+ +Y+Y P+V ++ DF L C+ + +
Sbjct: 166 D--ATFPLRPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTV----EAA 219
Query: 218 SKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 268
S C+ + VS +S Q ME ++ +M Y+YC D R EC
Sbjct: 220 SSCN---PASVSPYGQLSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 267
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 193 bits (491), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 142/231 (61%), Gaps = 11/231 (4%)
Query: 38 TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGK 97
+GSGF S + Y G+F A+IKL + YTAGV+ +FY+SN + HDEID EFLG I GK
Sbjct: 71 SGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGK 130
Query: 98 DWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTA 157
+ +QTN++ GS RE R +LWFDP+ D+H Y+I WT S+IIF++D +PIR + R +
Sbjct: 131 PYTLQTNVFIEGSGD--REMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKS 188
Query: 158 SMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTS 217
FP +P+ +Y ++WD S WAT GKY+ +Y+Y P+V ++ DF L C+ + +
Sbjct: 189 D--ATFPLRPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTV----EAA 242
Query: 218 SKCDITESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 268
S C+ + VS +S Q ME ++ +M Y+YC D R EC
Sbjct: 243 SSCN---PASVSPYGQLSQQQVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 290
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/236 (38%), Positives = 133/236 (56%), Gaps = 13/236 (5%)
Query: 37 YTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRG 96
YTG+GF S YL G FS +KL +AG V AFY+S+ + HDEIDFEFLGN G
Sbjct: 46 YTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQN---SEHDEIDFEFLGNRTG 102
Query: 97 KDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRT 156
+ + +QTN++ G RE+R LWFDP+ +FH YS+LW I+F +D +PIR FK
Sbjct: 103 QPYILQTNVFTGGKGD--REQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNC 160
Query: 157 ASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQ 215
+G FP +PM +Y+++W+ DWAT GG + ++ AP++ + F + GC
Sbjct: 161 KDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCE----AS 216
Query: 216 TSSKCDITESSK---VSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVPPFEC 268
+K T+ ++ + Q ++ R+K+ Y+YC D+ RY P EC
Sbjct: 217 VEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDRSRYPSMPPEC 272
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 34 YCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGN 93
Y + G G S Y +G + ++K PA G+V AFY S G DEID EFLG
Sbjct: 43 YNKFDGGGNQSVQTYGYGLYEVNMK-PAK-NVGIVSAFYTSTGPTDGTPWDEIDIEFLGK 100
Query: 94 IRGKDWRIQTNIYGNGSTSIGREER-YNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIRE 152
K +Q N Y NG +G E+ NL FD ++ +H Y+ W + I +Y+DG +
Sbjct: 101 DTTK---VQFNYYTNG---VGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----Q 150
Query: 153 FKRTASMGGDFPAKPMSLYATIWDGS 178
K TA+ P P +Y ++W G+
Sbjct: 151 LKHTATT--QIPQTPGKIYMSLWAGA 174
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 16/142 (11%)
Query: 42 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 101
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 6 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 102 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGG 161
Q N Y NG G E+ +L FD S FH Y+ W I +Y+DG+ K TA+
Sbjct: 61 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA-- 112
Query: 162 DFPAKPMSLYATIWDGS---DW 180
+ P+ P + +W+G+ DW
Sbjct: 113 NIPSTPGKIMMNLWNGTGVDDW 134
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 16/142 (11%)
Query: 42 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 101
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 6 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 102 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGG 161
Q N Y NG G E+ +L FD S FH Y+ W I +Y+DG+ K TA+
Sbjct: 61 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA-- 112
Query: 162 DFPAKPMSLYATIWDGS---DW 180
+ P+ P + +W+G+ DW
Sbjct: 113 NIPSTPGKIMMNLWNGTGVDDW 134
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 16/142 (11%)
Query: 42 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 101
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 62 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 116
Query: 102 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGG 161
Q N Y NG G E+ +L FD S FH Y+ W I +Y+DG+ K TA+
Sbjct: 117 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA-- 168
Query: 162 DFPAKPMSLYATIWDGS---DW 180
+ P+ P + +W+G+ DW
Sbjct: 169 NIPSTPGKIMMNLWNGTGVDDW 190
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 87/182 (47%), Gaps = 21/182 (11%)
Query: 42 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 101
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 6 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 102 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGG 161
Q N Y NG G E+ +L FD S FH Y+ W I +Y+DG+ K TA+
Sbjct: 61 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA-- 112
Query: 162 DFPAKPMSLYATIWDGS---DWATNGGKYR-VNYKYAPY-VTEFSDFVLHGCSFDPIEQT 216
+ P+ P + +W+G+ DW G Y N YA Y +++ G F+P
Sbjct: 113 NIPSTPGKIMMNLWNGTGVDDWL---GSYNGANPLYAEYDWVKYTSNQTGGSFFEPFNSY 169
Query: 217 SS 218
+S
Sbjct: 170 NS 171
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 16/142 (11%)
Query: 42 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 101
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 64 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 118
Query: 102 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGG 161
Q N Y NG G E+ +L FD S FH Y+ W I +Y+DG+ K TA+
Sbjct: 119 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA-- 170
Query: 162 DFPAKPMSLYATIWDGS---DW 180
+ P+ P + +W+G+ DW
Sbjct: 171 NIPSTPGKIMMNLWNGTGVDDW 192
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 16/142 (11%)
Query: 42 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 101
+ S ++Y +G + S+K PA T G+V +F+ G D+ID +FLG K +
Sbjct: 64 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDQIDIQFLGKDTTK---V 118
Query: 102 QTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGG 161
Q N Y NG G E+ +L FD S FH Y+ W I +Y+DG+ K TA+
Sbjct: 119 QFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA-- 170
Query: 162 DFPAKPMSLYATIWDGS---DW 180
+ P+ P + +W+G+ DW
Sbjct: 171 NIPSTPGKIMMNLWNGTGVDDW 192
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 48 YLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYG 107
Y +G + ++K PA G+V +F+ G DEID EFLG K +Q N Y
Sbjct: 70 YGYGLYEVNMK-PAK-NVGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYT 124
Query: 108 NGSTSIGREER-YNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAK 166
NG +G E+ NL FD ++ +H Y+ W + I +Y+DG + K TA+ P
Sbjct: 125 NG---VGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATT--QIPQT 175
Query: 167 PMSLYATIWDGS 178
P + +W+G+
Sbjct: 176 PGKIMMNLWNGA 187
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 73/158 (46%), Gaps = 19/158 (12%)
Query: 66 GVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDP 125
G+V +F+ G DEID EFLG K +Q N Y NG G E+ +L FD
Sbjct: 3 GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVG--GHEKVISLGFDA 57
Query: 126 SDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---DWAT 182
S FH Y+ W I +Y+DG+ K TA+ + P+ P + +W+G+ DW
Sbjct: 58 SKGFHTYAFDWQPGYIKWYVDGV----LKHTATA--NIPSTPGKIMMNLWNGTGVDDWL- 110
Query: 183 NGGKYR-VNYKYAPY-VTEFSDFVLHGCSFDPIEQTSS 218
G Y N YA Y +++ G F+P +S
Sbjct: 111 --GSYNGANPLYAEYDWVKYTSNQTGGSFFEPFNSYNS 146
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 37 YTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRG 96
Y G+ + + D + +G + +K PA G+V +F+ G + DEID EFLG
Sbjct: 79 YAGAEYRTRDKFGYGLYQVRMK-PAK-NPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTT 136
Query: 97 KDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRT 156
K +Q N Y N + + E Y+L FD S+DFH Y+ W + I + +DG E R
Sbjct: 137 K---VQFNYYTNSAGN--HEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDG---EEVYRA 188
Query: 157 ASMGGDFPAKPMSLYATIWDG 177
D P P + IW G
Sbjct: 189 YD---DIPVHPGKIMLNIWPG 206
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 48 YLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYG 107
Y +G + +K PA T G+V +F+ G DEID EFLG K +Q N Y
Sbjct: 94 YGYGLYEVRMK-PAKNT-GIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYT 148
Query: 108 NGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKP 167
NG+ + E+ +L FD ++ +H Y+ W + I +Y+DG + K TA+ P P
Sbjct: 149 NGAGN--HEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDG----QLKHTAT--NQIPTTP 200
Query: 168 MSLYATIWDGS 178
+ +W+G+
Sbjct: 201 GKIMMNLWNGT 211
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 114 GREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYAT 173
G E+ +L FD S FH Y+ W I +Y+DG+ K TA+ + P+ P +
Sbjct: 3 GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATA--NIPSTPGKIMMN 56
Query: 174 IWDGS---DWATNGGKYR-VNYKYAPY-VTEFSDFVLHGCSFDPIEQTSS 218
+W+G+ DW G Y N YA Y +++ G F+P +S
Sbjct: 57 LWNGTGVDDWL---GSYNGANPLYAEYDWVKYTSNQTGGSFFEPFNSYNS 103
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 42 FVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRI 101
+ S ++Y +G + S+K PA T G+V +F+ G DEID EFLG K +
Sbjct: 152 YRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 206
Query: 102 QTNIYGNG 109
Q N Y NG
Sbjct: 207 QFNYYTNG 214
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 20/143 (13%)
Query: 27 RVSEYDFYCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFY---------MSNGD 77
+V+ Y Y YT S +G++ A IK + + GV AF+ GD
Sbjct: 76 QVANYPLY--YTSGVAKSRATGNYGYYEARIKGASTF-PGVSPAFWXYSTIDRSLTKEGD 132
Query: 78 MFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGR--------EERYNLWFDPSDDF 129
+ D ++ +R D + + NG + R Y+L FDP +DF
Sbjct: 133 VQYSEIDVVELTQKSAVRESDHDLHNIVVKNGKPTWXRPGSFPQTNHNGYHLPFDPRNDF 192
Query: 130 HQYSILWTDSQIIFYIDGIPIRE 152
H Y + T +I +Y+DG + E
Sbjct: 193 HTYGVNVTKDKITWYVDGEIVGE 215
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 37 YTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYM-SNGDMFEKNHD--EIDFEFLGN 93
++G+ + + Y +G F A +K+ A +G V + ++ NG E+D E LG
Sbjct: 7 FSGAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK 64
Query: 94 IRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQIIFYIDGIPIR 151
G Q+NI + + E+++ P+ D FH Y + WT + + + +DG +R
Sbjct: 65 SPGS---FQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 120
Query: 152 E 152
+
Sbjct: 121 K 121
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 54 SASIKLPADYTAGVVVAFYMSNGDMFE---KNHDEID-FEFLGNIRGKDWRIQTNIYGNG 109
A IKLP G+ AF+M ++ E N EID EFLG+ + I ++G G
Sbjct: 105 EARIKLPKG--KGLWPAFWMLGSNIREVGWPNCGEIDIMEFLGH---EPRTIHGTVHGPG 159
Query: 110 -STSIGREERYNL---WFDPSDDFHQYSILWTDSQIIFYIDGIPIREF--KRTASMGGDF 163
S S G Y L D ++DFH + I+W +I +Y+DG E ++ +MG ++
Sbjct: 160 YSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPDKIKWYVDGTFYHEVTKEQVEAMGYEW 219
Query: 164 P-AKPMSLYATIWDGSDWATN 183
KP + + G W N
Sbjct: 220 VFDKPFYIILNLAVGGYWPGN 240
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 37 YTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYM-SNGDMFEKNHD--EIDFEFLGN 93
++G+ + + +G F A +K+ A +G V + ++ NG E+D E LG
Sbjct: 4 FSGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK 61
Query: 94 IRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQIIFYIDGIPIR 151
G Q+NI + + E+++ P+ D FH Y + WT + + + +DG +R
Sbjct: 62 NPGS---FQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 117
Query: 152 E 152
+
Sbjct: 118 K 118
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 37 YTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYM-SNGDMFEKNHD--EIDFEFLGN 93
++G+ + + +G F A +K+ A +G V + + NG E+D E LG
Sbjct: 5 FSGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMILYQNGSEIADGRPWVEVDIEVLGK 62
Query: 94 IRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQIIFYIDGIPIR 151
G Q+NI + + E+++ P+ D FH Y + WT + + + +DG +R
Sbjct: 63 NPGS---FQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 118
Query: 152 E 152
+
Sbjct: 119 K 119
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 37 YTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYM-SNGDMFEKNHD--EIDFEFLGN 93
++G+ + + +G F A +K+ A +G V + ++ NG E+D E LG
Sbjct: 5 FSGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK 62
Query: 94 IRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQIIFYIDGIPIR 151
G Q+NI G + + P+ D FH Y + WT + + + +DG +R
Sbjct: 63 NPGS---FQSNII-TGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVR 118
Query: 152 E 152
+
Sbjct: 119 K 119
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 37 YTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHD--EIDFEFLGNI 94
++G+ + + +G F A K A + V F NG E+D E LG
Sbjct: 7 FSGAELYTLEEVQYGKFEARXKXAA-ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGKN 65
Query: 95 RGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQIIFYIDGIPIRE 152
G Q+NI + + E+++ P+ D FH Y + WT + + + +DG +R+
Sbjct: 66 PGS---FQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 121
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 37 YTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHD--EIDFEFLGNI 94
++G+ + + +G F A K A + V F NG E+D E LG
Sbjct: 4 FSGAELYTLEEVQYGKFEARXKXAA-ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGKN 62
Query: 95 RGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDD--FHQYSILWTDSQIIFYIDGIPIRE 152
G Q+NI + + E+++ P+ D FH Y + WT + + + +DG +R+
Sbjct: 63 PGS---FQSNIITGKAGAQKTSEKHHA-VSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 50 HGFFSASIKLPADYTAGVVVAFYMSNGDMFEK---NHDEIDFEFLGNIRGKDWRIQTNIY 106
+G A I++P G+ AF+M G + EID + N+ + R+ ++
Sbjct: 83 YGRIEARIQIPRG--QGIWPAFWMLGGSFPGTPWPSSGEIDI--MENVGFEPHRVHGTVH 138
Query: 107 G---NGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGD 162
G +G + I ++ + +D FH +++ W +I +++DG R AS+G +
Sbjct: 139 GPGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITWFVDGQQFHRVTR-ASVGAN 196
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 11/138 (7%)
Query: 50 HGFFSASIKLPADYTAGVVVAFYMSNGDMFEKN-HDEIDFEFLGNIRGKDWRIQTNIYGN 108
+G ASI++P G+ AF+M D D + + + NI + + +++G
Sbjct: 87 YGRVEASIQIPRG--QGIWPAFWMLGADFPNTPWPDSGEIDIMENIGREPHLVHGSLHGP 144
Query: 109 GSTSIGREERYNLWFDP-----SDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDF 163
G G E + P +D FH +++ W I + +DG+ + + + G +
Sbjct: 145 GY--FGGEPLTGSYMHPQGWSFADTFHTFAVDWRPGSITWSVDGVAYQTYTSADTRGNPW 202
Query: 164 P-AKPMSLYATIWDGSDW 180
+P + + G DW
Sbjct: 203 VFDQPFFMILNVAVGGDW 220
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 124 DPSDDFHQYSILWTDSQIIFYIDG 147
D S+DFH +SI W + ++ +Y+DG
Sbjct: 173 DFSEDFHIFSIEWDEDEVEWYVDG 196
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 124 DPSDDFHQYSILWTDSQIIFYIDG 147
D S+DFH +SI W + ++ +Y+DG
Sbjct: 181 DFSEDFHIFSIEWDEDEVEWYVDG 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,981,971
Number of Sequences: 62578
Number of extensions: 387874
Number of successful extensions: 770
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 43
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)