Query 021601
Match_columns 310
No_of_seqs 296 out of 1632
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:15:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02176 GH16_XET Xyloglucan en 100.0 3.1E-74 6.6E-79 534.9 29.8 233 29-268 27-263 (263)
2 PLN03161 Probable xyloglucan e 100.0 3.4E-73 7.3E-78 532.0 28.8 238 29-272 48-290 (291)
3 cd02183 GH16_fungal_CRH1_trans 100.0 1.2E-42 2.5E-47 313.1 23.4 165 30-209 26-202 (203)
4 cd02175 GH16_lichenase lichena 100.0 9.1E-36 2E-40 268.9 23.0 155 36-206 54-211 (212)
5 cd00413 Glyco_hydrolase_16 gly 100.0 4.1E-32 8.8E-37 242.2 21.6 154 37-206 53-210 (210)
6 PF00722 Glyco_hydro_16: Glyco 100.0 2.6E-32 5.7E-37 239.2 19.5 173 11-204 6-185 (185)
7 cd08023 GH16_laminarinase_like 100.0 3E-32 6.4E-37 248.5 20.4 162 36-206 63-235 (235)
8 cd02178 GH16_beta_agarase Beta 100.0 4.9E-32 1.1E-36 251.6 19.3 163 36-206 84-257 (258)
9 cd02177 GH16_kappa_carrageenas 100.0 7.3E-30 1.6E-34 238.7 20.2 159 37-206 79-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 6.7E-30 1.5E-34 241.7 17.9 166 37-206 64-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 3.8E-29 8.3E-34 232.3 17.7 165 36-206 67-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 100.0 6.2E-29 1.3E-33 238.8 18.1 148 32-181 94-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 3.5E-28 7.6E-33 232.7 16.5 144 32-178 91-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 3.6E-23 7.8E-28 200.2 18.6 137 36-181 102-242 (355)
15 PF06955 XET_C: Xyloglucan end 99.7 9.4E-19 2E-23 124.6 4.2 43 225-268 8-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.6 9.9E-15 2.1E-19 145.7 12.2 88 126-223 365-465 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.5 5.5E-14 1.2E-18 132.6 11.5 139 36-185 66-253 (293)
18 smart00560 LamGL LamG-like jel 92.2 5.9 0.00013 32.7 14.3 69 125-210 59-130 (133)
19 PF13385 Laminin_G_3: Concanav 90.4 0.75 1.6E-05 37.2 5.9 67 125-208 83-149 (157)
20 PF06439 DUF1080: Domain of Un 90.4 3.3 7.2E-05 35.5 10.2 110 36-156 40-156 (185)
21 smart00210 TSPN Thrombospondin 88.1 11 0.00023 33.2 11.8 29 126-154 116-144 (184)
22 PF09264 Sial-lect-inser: Vibr 87.9 0.97 2.1E-05 40.6 5.0 28 127-154 92-121 (198)
23 PF10287 DUF2401: Putative TOS 85.8 3.6 7.8E-05 38.2 7.6 82 52-139 102-207 (235)
24 KOG1834 Calsyntenin [Extracell 80.8 9.8 0.00021 40.4 9.2 56 125-186 440-495 (952)
25 cd00110 LamG Laminin G domain; 74.0 46 0.00099 27.0 16.2 86 49-153 20-106 (151)
26 cd00152 PTX Pentraxins are pla 66.0 42 0.00092 29.8 8.6 73 125-207 88-162 (201)
27 PF14099 Polysacc_lyase: Polys 66.0 96 0.0021 27.6 11.0 50 124-177 149-204 (224)
28 smart00159 PTX Pentraxin / C-r 63.9 53 0.0011 29.3 8.9 73 125-207 88-162 (206)
29 PF02210 Laminin_G_2: Laminin 63.6 68 0.0015 24.9 9.4 74 126-206 53-126 (128)
30 PF02973 Sialidase: Sialidase, 62.7 1.2E+02 0.0026 27.4 13.9 135 47-210 31-177 (190)
31 smart00282 LamG Laminin G doma 51.6 1.2E+02 0.0027 24.2 14.5 28 126-153 61-88 (135)
32 KOG4352 Fas-mediated apoptosis 23.2 1.3E+02 0.0028 26.4 4.1 56 117-173 93-152 (187)
33 PF09224 DUF1961: Domain of un 22.3 6.3E+02 0.014 23.4 9.3 59 127-205 159-218 (218)
34 PF07691 PA14: PA14 domain; I 21.9 1.3E+02 0.0028 24.3 3.8 29 125-154 57-85 (145)
35 PF06832 BiPBP_C: Penicillin-B 20.3 1.2E+02 0.0025 23.2 3.0 34 140-175 44-78 (89)
No 1
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=3.1e-74 Score=534.88 Aligned_cols=233 Identities=50% Similarity=0.932 Sum_probs=214.5
Q ss_pred ccceeccCccccEEEEcCceEeEEEEEEEEecCCCCCeeEEeeeeeecCCCCCCCceEEEEEccCcCCCcceEEEeEEcC
Q 021601 29 SEYDFYCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGN 108 (310)
Q Consensus 29 ~~~~~ld~~sga~i~Sk~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~~~~~~~EID~E~lG~~~g~p~~vqTNv~~~ 108 (310)
...|+||+++||+|.||..|+||+||||||||+|+++|+||||||++++ |+.++|||||+||+.+|+|+++|||+|.+
T Consensus 27 ~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~--wp~~~EID~E~lGn~~g~~~~~qtnv~~~ 104 (263)
T cd02176 27 SVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQG--PDNHDEIDFEFLGNVTGQPYTLQTNVFAN 104 (263)
T ss_pred EEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCC--CCCCCeEEEEEecccCCCceEEEEEEeCC
Confidence 4568999999999999999999999999999998889999999999986 78999999999999999999999999998
Q ss_pred CCcCCCCceEEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCC-CCCcEEEEEEeeCCCCCCCCCcc
Q 021601 109 GSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKY 187 (310)
Q Consensus 109 G~~~~~re~~~~l~~dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~Gg~Wat~GG~~ 187 (310)
|. +++++++.++||++++||+|+|+|+|++|+|||||++||++++.+..|.+|| ++||+|++|||+||+|||+||++
T Consensus 105 g~--g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l~~niW~g~~WAt~gG~~ 182 (263)
T cd02176 105 GV--GGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDGSDWATQGGRV 182 (263)
T ss_pred CC--CCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccceEEEEEeeEcCCCcccCCCcc
Confidence 86 5688899999999999999999999999999999999999998877778999 59999999999999999999999
Q ss_pred cccCCCCCEEEEEcEEEEeeeecCCCCCCCCcccC---CCCCCCCCCCCCCHHHHHHHHHhhhcCeEEeccccCCCCCCC
Q 021601 188 RVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDI---TESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVP 264 (310)
Q Consensus 188 ~~d~~~aPf~a~~~~~~v~~c~~~~~~~~~~~C~~---~~~~~~~~~~~l~~~q~~~~~~vr~~~m~YdYC~D~~R~~~~ 264 (310)
++||+++||+|.|++|+|.||.+++.. ..|.. ..|+....+++|+++|+++|+|||+||||||||+|++|||.+
T Consensus 183 ~~d~~~aPf~a~~~~~~~~~c~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yC~d~~r~~~~ 259 (263)
T cd02176 183 KIDWSYAPFVASYRDFKLDGCVVDPGD---SFSSCSCTEDWWNGSTYQQLSANQQRAMEWVRRNYMVYDYCDDRKRYPVP 259 (263)
T ss_pred cccCCCCCeeEEEeeEEEeeeecCCCC---ccccCCCccccccccccccCCHHHHHHHHHHHHCCEEEecCCCCCcCCCC
Confidence 999999999999999999999987642 24543 235555667899999999999999999999999999999999
Q ss_pred CCCc
Q 021601 265 PFEC 268 (310)
Q Consensus 265 p~EC 268 (310)
||||
T Consensus 260 p~ec 263 (263)
T cd02176 260 PPEC 263 (263)
T ss_pred cCCC
Confidence 9999
No 2
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=3.4e-73 Score=531.98 Aligned_cols=238 Identities=34% Similarity=0.700 Sum_probs=215.9
Q ss_pred ccceeccCccccEEEEcCceEeEEEEEEEEecCCCCCeeEEeeeeeecCCCCCCCceEEEEEccCcCCCcceEEEeEEcC
Q 021601 29 SEYDFYCVYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGN 108 (310)
Q Consensus 29 ~~~~~ld~~sga~i~Sk~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~~~~~~~EID~E~lG~~~g~p~~vqTNv~~~ 108 (310)
...|+||+.+|++|+||+.|+||+||||||||+|+++|+||||||++.+ +.+||||||+||+++++|+++|||+|.+
T Consensus 48 ~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~---~~~dEIDiEfLG~~~g~~~~vqtN~y~~ 124 (291)
T PLN03161 48 NLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTG---SRHDEIDFEFLGNVSGQPYTIHTNIYTQ 124 (291)
T ss_pred EEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCC---CCCCeEEEEecCCCCCCceEEEeceEeC
Confidence 3568999999999999999999999999999998789999999999863 4799999999999989999999999998
Q ss_pred CCcCCCCceEEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCC-CCCcEEEEEEeeCCCCCCCCCcc
Q 021601 109 GSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKY 187 (310)
Q Consensus 109 G~~~~~re~~~~l~~dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~Gg~Wat~GG~~ 187 (310)
|. +.+++++.++||++++||+|+|+|+|++|+|||||++||++++.+..|.+|| .+||+|++|||+|++|||+||++
T Consensus 125 g~--g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~ 202 (291)
T PLN03161 125 GN--GSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRV 202 (291)
T ss_pred Cc--CCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCce
Confidence 87 5789899999999999999999999999999999999999998777778999 68999999999999999999999
Q ss_pred cccCCCCCEEEEEcEEEEeeeecCCCCCCCCcccCC---CCCCCCCCCCCCHHHHHHHHHhhhcCeEEeccccCCCCCC-
Q 021601 188 RVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDIT---ESSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKV- 263 (310)
Q Consensus 188 ~~d~~~aPf~a~~~~~~v~~c~~~~~~~~~~~C~~~---~~~~~~~~~~l~~~q~~~~~~vr~~~m~YdYC~D~~R~~~- 263 (310)
||||+++||+|.|++|++.||.+++.. ....|..+ .|+....++.|+++|+++|+|||+||||||||+|++|||+
T Consensus 203 kidw~~aPf~a~~~~f~~~~C~~~~~~-~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~ 281 (291)
T PLN03161 203 KIDWTLAPFVARGRRFRARACKWNGPV-SIKQCADPTPSNWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGV 281 (291)
T ss_pred eccCCcCCeeEEeeeEEEEeeccCCCC-CccccCCCCccccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCC
Confidence 999999999999999999999986531 12468653 2554556789999999999999999999999999999998
Q ss_pred CCCCccCCh
Q 021601 264 PPFECVINP 272 (310)
Q Consensus 264 ~p~EC~~~~ 272 (310)
+||||.++.
T Consensus 282 ~p~EC~~~~ 290 (291)
T PLN03161 282 MPPECFKPQ 290 (291)
T ss_pred cCcccCCCc
Confidence 899998653
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=1.2e-42 Score=313.06 Aligned_cols=165 Identities=28% Similarity=0.530 Sum_probs=145.0
Q ss_pred cceeccCc-cccEEEEcCceEeEEEEEEEEecCCCCCeeEEeeeeeecCCCCCCCceEEEEEccCcCCCcceEEEeEEcC
Q 021601 30 EYDFYCVY-TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGN 108 (310)
Q Consensus 30 ~~~~ld~~-sga~i~Sk~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~~~~~~~EID~E~lG~~~g~p~~vqTNv~~~ 108 (310)
..|.||+. +|++|.|++.|+||+||||||||.+ +|+||||||+++ .++|||||++|++ +..+|+|+|.+
T Consensus 26 ~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~-----~~gEIDIE~~G~~---~~~~~tn~~~~ 95 (203)
T cd02183 26 ASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD-----DLDEIDWEWVGGD---LTQVQTNYFGK 95 (203)
T ss_pred EEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC-----CCCEEEEEecCCC---CCEEEeEEECC
Confidence 44788887 7999999999999999999999997 999999999987 4699999999974 56899999987
Q ss_pred CCc-CCCCceEEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEecccc-CCCCCCCCCcEEEEEEeeCCC-------
Q 021601 109 GST-SIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTAS-MGGDFPAKPMSLYATIWDGSD------- 179 (310)
Q Consensus 109 G~~-~~~re~~~~l~~dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~-~g~~~P~~Pm~l~lnlW~Gg~------- 179 (310)
|.. ..++.+.+.++++++++||+|+|+|+|+.|+|||||++++++++.+. .+..||++||+|+||+|+||+
T Consensus 96 g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~~P~~l~ln~W~gg~~~~~~g~ 175 (203)
T cd02183 96 GNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQTPMRLQIGIWAGGDPSNAPGT 175 (203)
T ss_pred CCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCCCCcEEEEEEecCCCccccCCc
Confidence 653 23455677788888899999999999999999999999999987542 356899999999999999985
Q ss_pred --CCCCCCcccccCCCCCEEEEEcEEEEeeee
Q 021601 180 --WATNGGKYRVNYKYAPYVTEFSDFVLHGCS 209 (310)
Q Consensus 180 --Wat~GG~~~~d~~~aPf~a~~~~~~v~~c~ 209 (310)
|| ||. +||+.+||.|.|++|+|. |.
T Consensus 176 ~~Wa--Gg~--~d~~~~P~~~~vd~v~v~-~~ 202 (203)
T cd02183 176 IEWA--GGE--TDYDKGPFTMYVKSVTVT-DY 202 (203)
T ss_pred ccCC--CCc--cCCCCCCEEEEEEEEEEE-eC
Confidence 99 885 999999999999999998 63
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=9.1e-36 Score=268.89 Aligned_cols=155 Identities=31% Similarity=0.577 Sum_probs=132.7
Q ss_pred CccccEEEEcCceEeEEEEEEEEecCCCCCeeEEeeeeeecCCCCCCCceEEEEEccCcCCCcceEEEeEEcCCCcCCCC
Q 021601 36 VYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGR 115 (310)
Q Consensus 36 ~~sga~i~Sk~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~~~~~~~EID~E~lG~~~g~p~~vqTNv~~~G~~~~~r 115 (310)
++++|+|.|+.+|+||+||||||+|.+ +|+||||||++.+..+..++|||||++|++. ..+++|+|.++. ...
T Consensus 54 ~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~EIDiE~~g~~~---~~~~~~~~~~~~--~~~ 126 (212)
T cd02175 54 PYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDEIDIEFLGKDT---TKVQFNYYTNGV--GGH 126 (212)
T ss_pred ccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCEEEEEEccCCC---CEeEEEEECCCC--CCC
Confidence 367999999999999999999999987 9999999999864434467999999999753 478899887765 345
Q ss_pred ceEEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCCCCCcEEEEEEeeCC---CCCCCCCcccccCC
Q 021601 116 EERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---DWATNGGKYRVNYK 192 (310)
Q Consensus 116 e~~~~l~~dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~Gg---~Wat~GG~~~~d~~ 192 (310)
...+.++++++++||+|+|+|+|+.|+|||||++++++...+ ..+|++||+|+||||.|+ +|+ |. +|.
T Consensus 127 ~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~~p~~i~~n~w~~~~~~~W~--G~---~~~- 197 (212)
T cd02175 127 EKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPDTPGKIMMNLWPGDGVDDWL--GP---FDG- 197 (212)
T ss_pred ceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCCCCcEEEEEEEcCCCCCCcC--Cc---CCC-
Confidence 556677889999999999999999999999999999998643 368999999999999985 598 43 566
Q ss_pred CCCEEEEEcEEEEe
Q 021601 193 YAPYVTEFSDFVLH 206 (310)
Q Consensus 193 ~aPf~a~~~~~~v~ 206 (310)
.+|+.|+||+||++
T Consensus 198 ~~p~~~~vd~vr~~ 211 (212)
T cd02175 198 GTPLTAEYDWVSYT 211 (212)
T ss_pred CCCeEEEEEEEEEe
Confidence 89999999999985
No 5
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=4.1e-32 Score=242.19 Aligned_cols=154 Identities=32% Similarity=0.561 Sum_probs=130.8
Q ss_pred ccccEEEE-cCceEeEEEEEEEEecCCCCCeeEEeeeeeecCCCCCCCceEEEEEccCcCCCcceEEEeEEcCCCcC---
Q 021601 37 YTGSGFVS-HDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTS--- 112 (310)
Q Consensus 37 ~sga~i~S-k~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~~~~~~~EID~E~lG~~~g~p~~vqTNv~~~G~~~--- 112 (310)
+++|+|.| ++.|+||+||+|||+|.+ .|+|+||||++.+..++..+|||||+++++ +..+++++|..+...
T Consensus 53 ~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~EIDiE~~~~~---~~~~~~~~h~~~~~~~~~ 127 (210)
T cd00413 53 YSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGEIDIEFLGRD---PTTVQTNVHWPGYGAGAT 127 (210)
T ss_pred eEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCeEEEEecccC---CCeEEEEEecCCCCcccc
Confidence 78999999 999999999999999997 999999999998755578999999999975 347888888765421
Q ss_pred CCCceEEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCCCCCcEEEEEEeeCCCCCCCCCcccccCC
Q 021601 113 IGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYK 192 (310)
Q Consensus 113 ~~re~~~~l~~dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~Gg~Wat~GG~~~~d~~ 192 (310)
......+.+++++.++||+|+|+|+|+.|+|||||++++++... .|++||+|+||+|.+++|+ +. .+..
T Consensus 128 ~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------~p~~p~~i~ln~~~~~~~~--~~---~~~~ 196 (210)
T cd00413 128 TGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------VPDDPMNIILNLWSDGGWW--WG---GPPP 196 (210)
T ss_pred cccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------CCCCCcEEEEEEEECCCCc--cc---CCCC
Confidence 23344555667788999999999999999999999999998742 7899999999999999987 33 3456
Q ss_pred CCCEEEEEcEEEEe
Q 021601 193 YAPYVTEFSDFVLH 206 (310)
Q Consensus 193 ~aPf~a~~~~~~v~ 206 (310)
..|..|.||+|+|+
T Consensus 197 ~~~~~~~Vd~vrvy 210 (210)
T cd00413 197 GAPAYMEIDWVRVY 210 (210)
T ss_pred CCCcEEEEEEEEEC
Confidence 88999999999984
No 6
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=2.6e-32 Score=239.20 Aligned_cols=173 Identities=35% Similarity=0.506 Sum_probs=138.6
Q ss_pred eeeEeeeeeeeccccCCC-ccceeccC-----ccccEEEEcCceEeEEEEEEEEecCCCCCeeEEeeeeeecCCCCCCCc
Q 021601 11 YSFFFPVFVYLISVPVRV-SEYDFYCV-----YTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHD 84 (310)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~ld~-----~sga~i~Sk~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~~~~~~~ 84 (310)
+-...+.++... +. .-.|.+++ ++|++|.|+..++||+||||||+|.+ .|+|+||||.+.+. ++.++
T Consensus 6 ~~~~~~~nv~~~----~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~-~~~~~ 78 (185)
T PF00722_consen 6 NCTWSPDNVTVE----DGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADG-WPDGG 78 (185)
T ss_dssp EEEETCCGEEEE----TTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGS-TTTTE
T ss_pred EEeeCCCcEEEc----CCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEeccccccccc-ccchh
Confidence 333444444444 22 33356666 88999999999999999999999986 99999999976444 78999
Q ss_pred eEEEEEccCcCCCcceEEEeEEcCCCcCCCCceEEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCC
Q 021601 85 EIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP 164 (310)
Q Consensus 85 EID~E~lG~~~g~p~~vqTNv~~~G~~~~~re~~~~l~~dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P 164 (310)
|||||++|++.. .+++|+|..+.........+.+..++.++||+|+|+|+|+.|+|||||++++++......+..||
T Consensus 79 EIDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P 155 (185)
T PF00722_consen 79 EIDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYP 155 (185)
T ss_dssp EEEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSS
T ss_pred hhhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCc
Confidence 999999998644 69999998877421124566778899999999999999999999999999999998765445689
Q ss_pred C-CCcEEEEEEeeCCCCCCCCCcccccCCCCCEEEEEcEEE
Q 021601 165 A-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFV 204 (310)
Q Consensus 165 ~-~Pm~l~lnlW~Gg~Wat~GG~~~~d~~~aPf~a~~~~~~ 204 (310)
. .||.|.+++|.|++|++..| .|+|||||
T Consensus 156 ~~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 156 FSTPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred ccceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 6 99999999999999885444 57888876
No 7
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=3e-32 Score=248.51 Aligned_cols=162 Identities=27% Similarity=0.449 Sum_probs=131.7
Q ss_pred CccccEEEE--cCceEeEEEEEEEEecCCCCCeeEEeeeeeecCCC---CCCCceEE-EEEccCcCCCcceEEEeEEcCC
Q 021601 36 VYTGSGFVS--HDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMF---EKNHDEID-FEFLGNIRGKDWRIQTNIYGNG 109 (310)
Q Consensus 36 ~~sga~i~S--k~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~~---~~~~~EID-~E~lG~~~g~p~~vqTNv~~~G 109 (310)
++++|.|.| ++.|+||+||||||+|.+ +|+||||||++.+.. |+..+||| ||++|+. |..+++++|..+
T Consensus 63 ~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~ 137 (235)
T cd08023 63 PYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYVGWPASGEIDIMEYVGNE---PNTVYGTLHGGA 137 (235)
T ss_pred cEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCCCCCCCCcceeEecCCCC---CCeEEEEEECCC
Confidence 478999999 788999999999999997 999999999998653 67899999 6999985 347888999776
Q ss_pred Cc--CCCCceEEecCC-CCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCC-CCCC-CCCcEEEEEEeeCCCCCCCC
Q 021601 110 ST--SIGREERYNLWF-DPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMG-GDFP-AKPMSLYATIWDGSDWATNG 184 (310)
Q Consensus 110 ~~--~~~re~~~~l~~-dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g-~~~P-~~Pm~l~lnlW~Gg~Wat~G 184 (310)
.. .......+.+.. +..++||+|+|+|+|++|+|||||++|+++++..... ..+| ++||+|+||+|++++|+ |
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~~~~~~~~~~~~~~~p~~liln~~~gg~w~--g 215 (235)
T cd08023 138 TNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYTNPNTDNGGQWPFDQPFYLILNLAVGGNWP--G 215 (235)
T ss_pred CCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEcccccCCcccCCCCCCcEEEEEEEEcCCCC--C
Confidence 53 123344555554 7899999999999999999999999999998754321 2334 89999999999999998 3
Q ss_pred CcccccCCCCCEEEEEcEEEEe
Q 021601 185 GKYRVNYKYAPYVTEFSDFVLH 206 (310)
Q Consensus 185 G~~~~d~~~aPf~a~~~~~~v~ 206 (310)
-. ......|..|.||+|||+
T Consensus 216 ~~--~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 216 PP--DDDTPFPATMEVDYVRVY 235 (235)
T ss_pred CC--CCCCCCCCEEEEEEEEEC
Confidence 21 344578999999999984
No 8
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=4.9e-32 Score=251.59 Aligned_cols=163 Identities=20% Similarity=0.248 Sum_probs=125.1
Q ss_pred CccccEEEEcCceEeEEEEEEEEecCCCCCeeEEeeeeeecCCCCCCCceEE-EEEccCcCC--CcceEEEeEEcCCCc-
Q 021601 36 VYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEID-FEFLGNIRG--KDWRIQTNIYGNGST- 111 (310)
Q Consensus 36 ~~sga~i~Sk~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~~~~~~~EID-~E~lG~~~g--~p~~vqTNv~~~G~~- 111 (310)
++++|+|.|++.|+||+||||||||.+ . +||||||++.+ ++.++||| ||++|+..+ .+..+++++|..+..
T Consensus 84 ~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~--~~~~gEIDI~E~~g~~~~~~~~~~~~~~~h~~~~~~ 158 (258)
T cd02178 84 KVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDT--KDSTTEIDILEHYGGDREEWFATRMNSNTHVFIRDP 158 (258)
T ss_pred cEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCC--CCCCCcEEhhhccCCCCCccccceeeeeEEEccCCC
Confidence 368999999999999999999999985 4 58999999986 56899999 799997632 245788887642221
Q ss_pred -C-CCC---ceEEecCCCCCCCcEEEEEEEc-CCeEEEEEcCeeEEEEeccccCCCCCC-CCCcEEEEEEeeCCCCCCCC
Q 021601 112 -S-IGR---EERYNLWFDPSDDFHQYSILWT-DSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNG 184 (310)
Q Consensus 112 -~-~~r---e~~~~l~~dps~dfHtY~i~Wt-p~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~Gg~Wat~G 184 (310)
. ..+ ...+.+.++.+++||+|+|+|+ |++|+|||||++++++++.+. ...+| ++||+|+||+++|| |+...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~~-~~~~~f~~p~~liln~avg~-w~g~~ 236 (258)
T cd02178 159 EQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSEI-TDGTGFDQPMYIIIDTETYD-WRGEP 236 (258)
T ss_pred CCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCccc-CcCCcCCCCeEEEEEecccc-CCCCC
Confidence 1 111 2234456677899999999999 999999999999999987543 23455 89999999999998 98211
Q ss_pred CcccccCCCCCEEEEEcEEEEe
Q 021601 185 GKYRVNYKYAPYVTEFSDFVLH 206 (310)
Q Consensus 185 G~~~~d~~~aPf~a~~~~~~v~ 206 (310)
+.. ..-...|..|.||||||+
T Consensus 237 ~~~-~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 237 TDE-ELADDSKNTFYVDYVRVY 257 (258)
T ss_pred Ccc-ccCCCCCCeEEEEEEEEe
Confidence 111 223456999999999996
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.97 E-value=7.3e-30 Score=238.73 Aligned_cols=159 Identities=22% Similarity=0.255 Sum_probs=120.7
Q ss_pred ccccEEEEcCceEeEEEEEEEEecCCCCCeeEEeeeeeecCC------CCCCCceEE-EEEccCc---CCCcc----eEE
Q 021601 37 YTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDM------FEKNHDEID-FEFLGNI---RGKDW----RIQ 102 (310)
Q Consensus 37 ~sga~i~Sk~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~------~~~~~~EID-~E~lG~~---~g~p~----~vq 102 (310)
+++|.|.|+.+|+||||||||||++. ..|+||||||+++.. .||.++||| ||.+|.. .+++. ++|
T Consensus 79 ytSg~~~t~~~~~YG~~EaRik~~p~-~~G~wpAfW~~~~~~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H 157 (269)
T cd02177 79 FTSGIFKSYAKGTYGYYEARIKGADI-FPGVCPSFWLYSDIDYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLH 157 (269)
T ss_pred EeeEEEEecCcceeeEEEEEEECCCC-CCceEeEEEEeccCCCCcccCCCCCCCeEEEEEEecCCccccccccccceEEE
Confidence 78999999999999999999998652 389999999999631 378899999 7888754 12233 355
Q ss_pred EeEEcCCCcCCC--------CceEEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCCCCCcEEEEEE
Q 021601 103 TNIYGNGSTSIG--------REERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATI 174 (310)
Q Consensus 103 TNv~~~G~~~~~--------re~~~~l~~dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnl 174 (310)
++++.+|..... ....+.+++|++++||+|+|+|+|+.|+|||||++++++.+ .+.+.||.|.+++
T Consensus 158 ~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~W~~~~i~~yvDg~~~~~~~~------~~w~~~~~~~~~~ 231 (269)
T cd02177 158 AIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCNVNQDEIIWYVDGVEVGRKPN------KYWHRPMNVTLSL 231 (269)
T ss_pred EeEecCCcccccCccccccccceEEccCCCCccCcEEEEEEEeCCEEEEEECCEEEEEEcC------CccccccEEeecc
Confidence 555444432111 12245677899999999999999999999999999999874 3457888888887
Q ss_pred eeCC---------CCCCCCCcccccCCCCCEEEEEcEEEEe
Q 021601 175 WDGS---------DWATNGGKYRVNYKYAPYVTEFSDFVLH 206 (310)
Q Consensus 175 W~Gg---------~Wat~GG~~~~d~~~aPf~a~~~~~~v~ 206 (310)
-.+. .|+ |+. .+.+.+|-.|+||+|||.
T Consensus 232 ~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 232 GLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRVW 268 (269)
T ss_pred ccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEEe
Confidence 5432 355 443 456789999999999996
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.97 E-value=6.7e-30 Score=241.73 Aligned_cols=166 Identities=16% Similarity=0.149 Sum_probs=116.6
Q ss_pred ccccEEEE--cCceEeEEEEEEEEecCC-CCCeeEEeeeeeecCC----------CCCC------CceEE-EEEccCcCC
Q 021601 37 YTGSGFVS--HDLYLHGFFSASIKLPAD-YTAGVVVAFYMSNGDM----------FEKN------HDEID-FEFLGNIRG 96 (310)
Q Consensus 37 ~sga~i~S--k~~f~YG~~EaRiKlp~g-~s~Gv~~AFwl~~~~~----------~~~~------~~EID-~E~lG~~~g 96 (310)
+++|+|.| |+.|+||+||||||||.+ ...|+||||||+++.. .||. .+||| ||.+|.+..
T Consensus 64 ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~~~~~~~WP~~~~~~~~GEIDImE~~~~~~~ 143 (295)
T cd02180 64 FRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYLATTEGVWPYSYDGRGAPEIDIIEAQVGNGL 143 (295)
T ss_pred EEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccccccccCCCCcccccCCCCcEEEEeeecCCCC
Confidence 78999999 567899999999999973 2489999999999631 3675 49999 899985431
Q ss_pred -Ccce---E----------------EEeEEcC-----CCcCCCCce-EE----ecCC----CCCCCcEEEEEEEcC----
Q 021601 97 -KDWR---I----------------QTNIYGN-----GSTSIGREE-RY----NLWF----DPSDDFHQYSILWTD---- 138 (310)
Q Consensus 97 -~p~~---v----------------qTNv~~~-----G~~~~~re~-~~----~l~~----dps~dfHtY~i~Wtp---- 138 (310)
.... + ++.+|.. +...++..+ .. .++. ...++||+|+|+|+|
T Consensus 144 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~ 223 (295)
T cd02180 144 GIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAISCVTRLNDSWYPGNGNEFQTYGFEYRPDDED 223 (295)
T ss_pred cCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCccccccccccccCCccccccCCCcEEEEEEEecCCCC
Confidence 1111 1 1111211 000001111 01 1111 136889999999999
Q ss_pred -CeEEEEEcCeeEEEEeccccCC------CCCCCCCcEEEEEEeeCCCCCCCCCcccccCCCCCEEEEEcEEEEe
Q 021601 139 -SQIIFYIDGIPIREFKRTASMG------GDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLH 206 (310)
Q Consensus 139 -~~I~fyVDG~~vr~~~~~~~~g------~~~P~~Pm~l~lnlW~Gg~Wat~GG~~~~d~~~aPf~a~~~~~~v~ 206 (310)
+.|+|||||+++++++..+... ..+|++||+|+||+++||+|+ |- +.+-...|..|+||+|||+
T Consensus 224 ~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~~~P~ylILNlAvGg~w~--g~--~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 224 DGYITWFVDDEPTWTIYAKALGPNGNIGWRIIPEEPMYIILNLGISSNFQ--DI--DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred CCEEEEEECCEEEEEEehHHcCCcccccccccCCCCeEEEEEEEeccccC--CC--CcccCCCCCEEEEEEEEEE
Confidence 8999999999999998653211 246799999999999999997 32 2445678999999999996
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.96 E-value=3.8e-29 Score=232.34 Aligned_cols=165 Identities=15% Similarity=0.144 Sum_probs=116.9
Q ss_pred CccccEEEEcCce--Ee----EEEEEEEEecCCC---CCeeEEeeeeeecCC-----CCCCCceEE-EEEccCcCCCcce
Q 021601 36 VYTGSGFVSHDLY--LH----GFFSASIKLPADY---TAGVVVAFYMSNGDM-----FEKNHDEID-FEFLGNIRGKDWR 100 (310)
Q Consensus 36 ~~sga~i~Sk~~f--~Y----G~~EaRiKlp~g~---s~Gv~~AFwl~~~~~-----~~~~~~EID-~E~lG~~~g~p~~ 100 (310)
++++|+|.|+.++ .| |+||||||+|.+. ..|+||||||++.+. .||..+||| ||..|.. +.+
T Consensus 67 ~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~~~~~WP~~GEIDImE~~~~~---~~~ 143 (259)
T cd02182 67 KWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRGNGTNWPACGELDIMENVNGL---STG 143 (259)
T ss_pred CEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccCCCCCCCccceeeeeeccCCC---Cce
Confidence 4889999998764 33 4899999999841 379999999999752 478899999 8999864 334
Q ss_pred EEEeEEcCCCcC-CCCceE-Ee-cCCCCCCCcEEEEEEEcC-----CeEEEEEcCeeEEEEeccccCC-C---CCCCCCc
Q 021601 101 IQTNIYGNGSTS-IGREER-YN-LWFDPSDDFHQYSILWTD-----SQIIFYIDGIPIREFKRTASMG-G---DFPAKPM 168 (310)
Q Consensus 101 vqTNv~~~G~~~-~~re~~-~~-l~~dps~dfHtY~i~Wtp-----~~I~fyVDG~~vr~~~~~~~~g-~---~~P~~Pm 168 (310)
.+ ++|...... ..++.. .. ......++||+|+|+|++ +.|+|||||+++++++.....+ . ..|++||
T Consensus 144 ~~-t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG~~~~t~~~~~~~~~~~~~~~~~~p~ 222 (259)
T cd02182 144 YG-TLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDGVVYHTVTGARVGDETTWQALAHHPL 222 (259)
T ss_pred EE-EEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECCEEEEEEehhhcCCCccccCcCCCCe
Confidence 33 455322110 011111 10 011245899999999997 9999999999999998642211 1 2348999
Q ss_pred EEEEEEeeCCCCCCCCCcccccCCCCCEEEEEcEEEEe
Q 021601 169 SLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLH 206 (310)
Q Consensus 169 ~l~lnlW~Gg~Wat~GG~~~~d~~~aPf~a~~~~~~v~ 206 (310)
+||||+++||+|+ |......-...|..|.||+|||+
T Consensus 223 ylIlN~avgg~w~--~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 223 FIILNVAVGGNWP--GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred EEEEEEEEeCCcC--CCCCcccccCCCceEEEEEEEEe
Confidence 9999999999998 43211123457899999999996
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=6.2e-29 Score=238.75 Aligned_cols=148 Identities=21% Similarity=0.203 Sum_probs=112.0
Q ss_pred eeccCccccEEEEc--CceEeEEEEEEEEecCCCCCeeEEeeeeeecCC---CCCCCceEE-EEEccCcCCCc-------
Q 021601 32 DFYCVYTGSGFVSH--DLYLHGFFSASIKLPADYTAGVVVAFYMSNGDM---FEKNHDEID-FEFLGNIRGKD------- 98 (310)
Q Consensus 32 ~~ld~~sga~i~Sk--~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~---~~~~~~EID-~E~lG~~~g~p------- 98 (310)
-+|.++++|+|.|+ +.|+|||||||||||.| .|+||||||++.+. .||..+||| ||.+|+....+
T Consensus 94 ~i~~p~~Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~ 171 (330)
T cd08024 94 GIINPVMSARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGI 171 (330)
T ss_pred cccCceEEEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCc
Confidence 35778999999994 67899999999999998 99999999999863 378999999 89999854221
Q ss_pred ceEEEeEEcCCCcCCC--Cce--EE-ecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccc----------------
Q 021601 99 WRIQTNIYGNGSTSIG--REE--RY-NLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTA---------------- 157 (310)
Q Consensus 99 ~~vqTNv~~~G~~~~~--re~--~~-~l~~dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~---------------- 157 (310)
..++.++|.......+ +.. .. ....+.+++||+|+|+|+|+.|+|||||+++.+++...
T Consensus 172 ~~v~~tlH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~ 251 (330)
T cd08024 172 NSVGSTLHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDN 251 (330)
T ss_pred ceEEEEEEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCC
Confidence 2356666643221111 111 11 12345678999999999999999999999999998521
Q ss_pred ---cCCCCCC-CCCcEEEEEEeeCCCCC
Q 021601 158 ---SMGGDFP-AKPMSLYATIWDGSDWA 181 (310)
Q Consensus 158 ---~~g~~~P-~~Pm~l~lnlW~Gg~Wa 181 (310)
..+...| ++|++|+|||++||.|.
T Consensus 252 ~w~~~~~~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 252 PWAGGGKMAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred cccccCcCCCCCCCEEEEEEEEecCCCC
Confidence 0123457 89999999999999884
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=3.5e-28 Score=232.70 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=104.8
Q ss_pred eeccCccccEEEEc--CceEeEEEEEEEEecCCCCCeeEEeeeeeecCC-C--C-CCCceEE-EEEccCcCC----C---
Q 021601 32 DFYCVYTGSGFVSH--DLYLHGFFSASIKLPADYTAGVVVAFYMSNGDM-F--E-KNHDEID-FEFLGNIRG----K--- 97 (310)
Q Consensus 32 ~~ld~~sga~i~Sk--~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~-~--~-~~~~EID-~E~lG~~~g----~--- 97 (310)
.+|.++++|+|.|+ +.|+|||||||||||.| .|+||||||++.+. + | |.++||| ||.+||... .
T Consensus 91 ~i~~P~~Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~ 168 (321)
T cd02179 91 SILPPVVSARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIG 168 (321)
T ss_pred ccCCCeeeeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceec
Confidence 35778999999996 56899999999999998 99999999999864 2 3 7899999 799998521 0
Q ss_pred cceEEEeEEcCCCcCCCCce---EEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEecccc---------------C
Q 021601 98 DWRIQTNIYGNGSTSIGREE---RYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTAS---------------M 159 (310)
Q Consensus 98 p~~vqTNv~~~G~~~~~re~---~~~l~~dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~---------------~ 159 (310)
..+++...+..... ..+.. ......+.+++||+|+|+|+|+.|+|||||+++++++.... .
T Consensus 169 ~~~l~~g~~~~~~~-~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~ 247 (321)
T cd02179 169 GKKLYGGPVLTDAE-PHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLG 247 (321)
T ss_pred cceEEcccccCCCc-ccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccc
Confidence 01222222211110 01111 11112456799999999999999999999999999986321 1
Q ss_pred C-CCCC-CCCcEEEEEEeeCC
Q 021601 160 G-GDFP-AKPMSLYATIWDGS 178 (310)
Q Consensus 160 g-~~~P-~~Pm~l~lnlW~Gg 178 (310)
| ...| ++|++|+|||++||
T Consensus 248 g~~~aPFD~~FyliLNlAVGG 268 (321)
T cd02179 248 GTVMAPFDKEFYLSLGVGVGG 268 (321)
T ss_pred cCccCCCCCCeEEEEEEEecC
Confidence 1 2346 89999999999987
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=3.6e-23 Score=200.17 Aligned_cols=137 Identities=28% Similarity=0.465 Sum_probs=115.9
Q ss_pred CccccEEEEcCc--eEeEEEEEEEEecCCCCCeeEEeeeeeecCC-CCCCCceEEEEEccCcCCCcceEEEeEEcCCCcC
Q 021601 36 VYTGSGFVSHDL--YLHGFFSASIKLPADYTAGVVVAFYMSNGDM-FEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTS 112 (310)
Q Consensus 36 ~~sga~i~Sk~~--f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~-~~~~~~EID~E~lG~~~g~p~~vqTNv~~~G~~~ 112 (310)
.+++++|+|..+ |+||++|+|||+|.+ .|+||||||++... .+..++|||+|++|++.. +..+|+|.+.++..
T Consensus 102 ~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~- 177 (355)
T COG2273 102 DYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGGWPDEIDIEDLGGQST-NTVIQTNHYQGGGG- 177 (355)
T ss_pred ccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCCCCcceeeeeecCCCc-ccceEeeeeccCCC-
Confidence 799999999988 899999999999986 99999999999854 356779999999997643 34599999987763
Q ss_pred CCCceEEecCC-CCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCCCCCcEEEEEEeeCCCCC
Q 021601 113 IGREERYNLWF-DPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWA 181 (310)
Q Consensus 113 ~~re~~~~l~~-dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~Gg~Wa 181 (310)
+.+....+.+ +..++||+|.++|.++.|+|||||++++++... ...|..||++++|+|.++.+.
T Consensus 178 -~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~~~~~p~y~~~nl~~~~~~~ 242 (355)
T COG2273 178 -GTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DYIPQIPFYVLVNLWMGGYAG 242 (355)
T ss_pred -CceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----ccCcCCcceeEEeecccCccC
Confidence 4444444556 788999999999999999999999999999854 345899999999999988664
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.75 E-value=9.4e-19 Score=124.64 Aligned_cols=43 Identities=37% Similarity=0.607 Sum_probs=34.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCeEEeccccCCCCCCC-CCCc
Q 021601 225 SSKVSIPTGVSPSQRIKMENFRRKHMTYSYCYDQIRYKVP-PFEC 268 (310)
Q Consensus 225 ~~~~~~~~~l~~~q~~~~~~vr~~~m~YdYC~D~~R~~~~-p~EC 268 (310)
|++...++ ||+.|+++|+|||+||||||||+|++|||+. |+||
T Consensus 8 w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 8 WWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp GGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred cccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 55555556 9999999999999999999999999999985 9999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.58 E-value=9.9e-15 Score=145.73 Aligned_cols=88 Identities=17% Similarity=0.269 Sum_probs=68.1
Q ss_pred CCCcEEEEEEEcCC-----eEEEEEcCeeEEEEeccccC--C----CCCCCCCcEEEEEEeeCCCCCCCCCcccccCC--
Q 021601 126 SDDFHQYSILWTDS-----QIIFYIDGIPIREFKRTASM--G----GDFPAKPMSLYATIWDGSDWATNGGKYRVNYK-- 192 (310)
Q Consensus 126 s~dfHtY~i~Wtp~-----~I~fyVDG~~vr~~~~~~~~--g----~~~P~~Pm~l~lnlW~Gg~Wat~GG~~~~d~~-- 192 (310)
..+||+|+|||.|. .|+|+|||+++.++...... + -.+|..||+|+|||....+|+ .+||.
T Consensus 365 ~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~~~~~I~~R~Ip~EPMyIIlNlgmS~sf~------~vd~~~L 438 (504)
T PF03935_consen 365 GGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALGPNPNIGQRPIPEEPMYIILNLGMSSSFG------YVDWNHL 438 (504)
T ss_pred CCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcCCCCCcCccccCcCCceeeeccccccccC------ccccccc
Confidence 37899999999874 79999999999999865431 1 357899999999999999996 26664
Q ss_pred CCCEEEEEcEEEEeeeecCCCCCCCCcccCC
Q 021601 193 YAPYVTEFSDFVLHGCSFDPIEQTSSKCDIT 223 (310)
Q Consensus 193 ~aPf~a~~~~~~v~~c~~~~~~~~~~~C~~~ 223 (310)
.+|..|.||+|||+.=.... .-.|...
T Consensus 439 ~FP~~M~IDYVRVYQ~~~~~----~vgCDP~ 465 (504)
T PF03935_consen 439 CFPATMRIDYVRVYQPEDAI----NVGCDPP 465 (504)
T ss_pred cccceEEEeEEEEeccCCCC----eeeeCCC
Confidence 68889999999997422111 2478754
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.53 E-value=5.5e-14 Score=132.55 Aligned_cols=139 Identities=22% Similarity=0.273 Sum_probs=92.5
Q ss_pred CccccEEEEcCceEeEEEEEEE-EecCCCCCeeEEeeeeeecCCCCCCCceEE-EEEccCcCCCcceEEEeEEcCCCcC-
Q 021601 36 VYTGSGFVSHDLYLHGFFSASI-KLPADYTAGVVVAFYMSNGDMFEKNHDEID-FEFLGNIRGKDWRIQTNIYGNGSTS- 112 (310)
Q Consensus 36 ~~sga~i~Sk~~f~YG~~EaRi-Klp~g~s~Gv~~AFwl~~~~~~~~~~~EID-~E~lG~~~g~p~~vqTNv~~~G~~~- 112 (310)
.+++++|.||.+|.+|+||+|| |||.+ .|+||||||++. .||..+||| ||.++... ..+..+|+.+...
T Consensus 66 gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~--~WP~~GEIDImE~vn~~~----~n~~tlHt~~gC~i 137 (293)
T cd02181 66 GRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGP--NWPNGGEIDIIEGVNLQT----SNQMTLHTGPGCTI 137 (293)
T ss_pred CceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCC--CCCCCCcEEEEeccCCCC----ceEEEEecCCCEEc
Confidence 3678999999999999999997 99997 999999999988 489999999 89998633 2333444321100
Q ss_pred -------C-------C------CceEE--------ecCCCCCCCcEEEEEEEcCCeEEEEE---cCeeEEEEeccccC--
Q 021601 113 -------I-------G------REERY--------NLWFDPSDDFHQYSILWTDSQIIFYI---DGIPIREFKRTASM-- 159 (310)
Q Consensus 113 -------~-------~------re~~~--------~l~~dps~dfHtY~i~Wtp~~I~fyV---DG~~vr~~~~~~~~-- 159 (310)
+ . ..-.+ -..|+ ..+=-+|.++|+.+.|..+. +.+|--.......+
T Consensus 138 ~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~~iP~di~~~~pdPs~ 216 (293)
T cd02181 138 SNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRGSIPADITSGSPDPST 216 (293)
T ss_pred CCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCCCCCcccccCCCCCcc
Confidence 0 0 00001 11121 23446999999999987554 33332211111111
Q ss_pred -C---CCCCC---------CCcEEEEEEeeCCCCCCCCC
Q 021601 160 -G---GDFPA---------KPMSLYATIWDGSDWATNGG 185 (310)
Q Consensus 160 -g---~~~P~---------~Pm~l~lnlW~Gg~Wat~GG 185 (310)
| ..||. ++++|++|+-.=|+|| |+
T Consensus 217 WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA--G~ 253 (293)
T cd02181 217 WGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA--GN 253 (293)
T ss_pred cCcccccCCCCCCChhHhcccCEEEEEeecccccc--Cc
Confidence 2 34554 8999999999999999 55
No 18
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=92.16 E-value=5.9 Score=32.74 Aligned_cols=69 Identities=9% Similarity=0.179 Sum_probs=44.5
Q ss_pred CCCCcEEEEEEEcC--CeEEEEEcCeeEEEEeccccCCCCCC-CCCcEEEEEEeeCCCCCCCCCcccccCCCCCEEEEEc
Q 021601 125 PSDDFHQYSILWTD--SQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFS 201 (310)
Q Consensus 125 ps~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~Gg~Wat~GG~~~~d~~~aPf~a~~~ 201 (310)
+...||...+.++. .+|.+||||+++.+.... ..+ ..|+.|-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 34789999999988 789999999998654321 111 233332211111 11 12468899999
Q ss_pred EEEEeeeec
Q 021601 202 DFVLHGCSF 210 (310)
Q Consensus 202 ~~~v~~c~~ 210 (310)
.|+|+.++-
T Consensus 122 evriy~~aL 130 (133)
T smart00560 122 EVRVYNRAL 130 (133)
T ss_pred EEEEecccc
Confidence 999997754
No 19
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=90.45 E-value=0.75 Score=37.21 Aligned_cols=67 Identities=15% Similarity=0.323 Sum_probs=40.6
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCCCCCcEEEEEEeeCCCCCCCCCcccccCCCCCEEEEEcEEE
Q 021601 125 PSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFV 204 (310)
Q Consensus 125 ps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~Gg~Wat~GG~~~~d~~~aPf~a~~~~~~ 204 (310)
+...||..++.|....+.+||||+++.+....... ...+..+ + -.|... ....+|...++.|+
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~-~~~~~~~--~----~iG~~~----------~~~~~~~g~i~~~~ 145 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNI-SLNSNGP--L----FIGGSG----------GGSSPFNGYIDDLR 145 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESSS-STTSCCE--E----EESS-S----------TT--B-EEEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCCc-CCCCcce--E----EEeecC----------CCCCceEEEEEEEE
Confidence 35889999999999999999999998765432110 0111121 1 122222 22678999999999
Q ss_pred Eeee
Q 021601 205 LHGC 208 (310)
Q Consensus 205 v~~c 208 (310)
|...
T Consensus 146 i~~~ 149 (157)
T PF13385_consen 146 IYNR 149 (157)
T ss_dssp EESS
T ss_pred EECc
Confidence 9844
No 20
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=90.40 E-value=3.3 Score=35.48 Aligned_cols=110 Identities=13% Similarity=0.119 Sum_probs=57.5
Q ss_pred CccccEEEEcCceEeEEEEEEEEecCCCCCeeEEeeeeeec-C---CCCCCCceEEEEEccCcCCCcceEEEeEEcCCCc
Q 021601 36 VYTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNG-D---MFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGST 111 (310)
Q Consensus 36 ~~sga~i~Sk~~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~-~---~~~~~~~EID~E~lG~~~g~p~~vqTNv~~~G~~ 111 (310)
...++.|.++..|.=..+++.+|+.++. -..+++-.. . ......-|+.+.--+..... ....|..
T Consensus 40 ~~~~~~l~~~~~~~df~l~~d~k~~~~~----~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~~-------~~~~G~~ 108 (185)
T PF06439_consen 40 GSGGGYLYTDKKFSDFELEVDFKITPGG----NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTGL-------PNSTGSL 108 (185)
T ss_dssp ESSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCSTT-------TTSTTSB
T ss_pred CCCcceEEECCccccEEEEEEEEECCCC----CeEEEEEeccccCCCCcceEEEEEEECCCCccCC-------CCccceE
Confidence 4456678888878778999999985532 233333333 0 11233445554332211000 0011111
Q ss_pred CCC--CceEE-ecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEecc
Q 021601 112 SIG--REERY-NLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRT 156 (310)
Q Consensus 112 ~~~--re~~~-~l~~dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~ 156 (310)
... ..... .....+..+||++.|.-..++|+.+|||++|.++...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 109 YDEPPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp TTTB-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred EEeccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 000 00000 0112356899999999999999999999999998854
No 21
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=88.06 E-value=11 Score=33.17 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=26.4
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEEEe
Q 021601 126 SDDFHQYSILWTDSQIIFYIDGIPIREFK 154 (310)
Q Consensus 126 s~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 154 (310)
...||...|.+..+.|++|||++++.+..
T Consensus 116 dg~WH~lal~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 116 DGQWHKLALSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred cCCceEEEEEEeCCEEEEEECCcccccee
Confidence 46799999999999999999999998764
No 22
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=87.91 E-value=0.97 Score=40.57 Aligned_cols=28 Identities=29% Similarity=0.724 Sum_probs=24.9
Q ss_pred CCcEEEEEEEcC--CeEEEEEcCeeEEEEe
Q 021601 127 DDFHQYSILWTD--SQIIFYIDGIPIREFK 154 (310)
Q Consensus 127 ~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~ 154 (310)
.+||.|.|...| ..-.|||||++|.++.
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 579999999988 8899999999999853
No 23
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=85.77 E-value=3.6 Score=38.23 Aligned_cols=82 Identities=20% Similarity=0.412 Sum_probs=50.1
Q ss_pred EEEEEEEecCCC-----CCeeEEeeeeeecCC-----C-------C-CCCceEE-EEEccCcCCCcceEEEeEEc-CCCc
Q 021601 52 FFSASIKLPADY-----TAGVVVAFYMSNGDM-----F-------E-KNHDEID-FEFLGNIRGKDWRIQTNIYG-NGST 111 (310)
Q Consensus 52 ~~EaRiKlp~g~-----s~Gv~~AFwl~~~~~-----~-------~-~~~~EID-~E~lG~~~g~p~~vqTNv~~-~G~~ 111 (310)
-|-++.+||... ...=.||+||++... | | ..++|+| ||+|... +. .+.+.+|. +|..
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCcc
Confidence 366778888731 234589999998742 3 2 3589999 8999763 33 56666665 4431
Q ss_pred C---CCCceEEecCC-CCCCCcEEEEEEEcCC
Q 021601 112 S---IGREERYNLWF-DPSDDFHQYSILWTDS 139 (310)
Q Consensus 112 ~---~~re~~~~l~~-dps~dfHtY~i~Wtp~ 139 (310)
. +.....+ | -|++..-++.|.++.+
T Consensus 179 ~~~~g~G~~~y---f~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSSDY---FKRPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCCCc---ccCCCCCCeEEEEEEcCC
Confidence 1 1111111 2 3667888888888643
No 24
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=80.80 E-value=9.8 Score=40.38 Aligned_cols=56 Identities=21% Similarity=0.472 Sum_probs=39.9
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCCCCCcEEEEEEeeCCCCCCCCCc
Q 021601 125 PSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGK 186 (310)
Q Consensus 125 ps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~Gg~Wat~GG~ 186 (310)
-.++||.|.+.-.=-.++.||||+-..-..-. .+||-.|.++-.-|=+|-=|. |+.
T Consensus 440 CD~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwplHpsk~~tqLvVGACW~--g~~ 495 (952)
T KOG1834|consen 440 CDNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWPLHPSKIETQLVVGACWQ--GRQ 495 (952)
T ss_pred hhhhhheeEEeecCceEEEEEcCcccCCceec----cCCccCcccccceeEEeeecc--Ccc
Confidence 35889999999976569999999865432222 468866666666666777787 554
No 25
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=74.00 E-value=46 Score=26.96 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=48.1
Q ss_pred EeEEEEEEEEecCCCCCeeEEeeeeeecCCCCCCCceEEEEEccCcCCCcceEEEeEEcCCCcCCCCceEEecCC-CCCC
Q 021601 49 LHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYNLWF-DPSD 127 (310)
Q Consensus 49 ~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~~~~~~~EID~E~lG~~~g~p~~vqTNv~~~G~~~~~re~~~~l~~-dps~ 127 (310)
....+++++|.... .|+. |++-.. ...+-|-+|+.. | .+...+.. |. ....+.... -...
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~----~~~~~~~l~l~~---g---~l~~~~~~-g~----~~~~~~~~~~v~dg 80 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQ----NGGDFLALELED---G---RLVLRYDL-GS----GSLVLSSKTPLNDG 80 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCC----CCCCEEEEEEEC---C---EEEEEEcC-Cc----ccEEEEccCccCCC
Confidence 44567777777663 6654 333222 134455566653 2 23332222 21 122222221 1246
Q ss_pred CcEEEEEEEcCCeEEEEEcCeeEEEE
Q 021601 128 DFHQYSILWTDSQIIFYIDGIPIREF 153 (310)
Q Consensus 128 dfHtY~i~Wtp~~I~fyVDG~~vr~~ 153 (310)
.||...|.+....++++|||.++.+.
T Consensus 81 ~Wh~v~i~~~~~~~~l~VD~~~~~~~ 106 (151)
T cd00110 81 QWHSVSVERNGRSVTLSVDGERVVES 106 (151)
T ss_pred CEEEEEEEECCCEEEEEECCccEEee
Confidence 79999999999999999999854443
No 26
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=66.03 E-value=42 Score=29.75 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=42.8
Q ss_pred CCCCcEEEEEEEcC--CeEEEEEcCeeEEEEeccccCCCCCCCCCcEEEEEEeeCCCCCCCCCcccccCCCCCEEEEEcE
Q 021601 125 PSDDFHQYSILWTD--SQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSD 202 (310)
Q Consensus 125 ps~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~Gg~Wat~GG~~~~d~~~aPf~a~~~~ 202 (310)
....||...+.|+. ..+.+||||+++.+-. -..+..++.. ..|+|.--- ..+ ||. .+. ...|.-.++.
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~~~-g~l~lG~~q-~~~---gg~--~~~-~~~f~G~I~~ 157 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVGPG-GSIILGQEQ-DSY---GGG--FDA-TQSFVGEISD 157 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEECCC-CeEEEeecc-cCC---CCC--CCC-CcceEEEEce
Confidence 46789999999984 4699999999875433 1112223322 223332110 111 342 232 3568888999
Q ss_pred EEEee
Q 021601 203 FVLHG 207 (310)
Q Consensus 203 ~~v~~ 207 (310)
|+|..
T Consensus 158 v~iw~ 162 (201)
T cd00152 158 VNMWD 162 (201)
T ss_pred eEEEc
Confidence 98873
No 27
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=66.00 E-value=96 Score=27.56 Aligned_cols=50 Identities=12% Similarity=0.369 Sum_probs=34.5
Q ss_pred CCCCCcEEEEE--EEcC---CeEEEEEcCeeEEEEeccccCCCCCC-CCCcEEEEEEeeC
Q 021601 124 DPSDDFHQYSI--LWTD---SQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDG 177 (310)
Q Consensus 124 dps~dfHtY~i--~Wtp---~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~G 177 (310)
.....||.+.| .|.+ ..|..++||++|..+.... .++ ....++-+.|.-.
T Consensus 149 ~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~ 204 (224)
T PF14099_consen 149 VERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRS 204 (224)
T ss_dssp S-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEH
T ss_pred cCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECC
Confidence 34588998876 5765 5699999999998887632 234 3667777777653
No 28
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=63.91 E-value=53 Score=29.33 Aligned_cols=73 Identities=18% Similarity=0.337 Sum_probs=41.7
Q ss_pred CCCCcEEEEEEEcC--CeEEEEEcCeeEEEEeccccCCCCCCCCCcEEEEEEeeCCCCCCCCCcccccCCCCCEEEEEcE
Q 021601 125 PSDDFHQYSILWTD--SQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSD 202 (310)
Q Consensus 125 ps~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~Gg~Wat~GG~~~~d~~~aPf~a~~~~ 202 (310)
....||...+.|+. ..+.+||||+++.. . .-..+..++. .-.|+|.- .-+.+ ||. .+. ...|.-.++.
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~-~~~~g~~i~~-~G~lvlGq-~qd~~---gg~--f~~-~~~f~G~i~~ 157 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-K-GLAKGYTVKP-GGSIILGQ-EQDSY---GGG--FDA-TQSFVGEIGD 157 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-c-cccCCcEECC-CCEEEEEe-cccCC---CCC--CCC-CcceeEEEee
Confidence 35789999999974 46999999998621 1 1111222322 22244433 11222 342 232 4458888888
Q ss_pred EEEee
Q 021601 203 FVLHG 207 (310)
Q Consensus 203 ~~v~~ 207 (310)
|+|..
T Consensus 158 v~iw~ 162 (206)
T smart00159 158 LNMWD 162 (206)
T ss_pred eEEec
Confidence 88873
No 29
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=63.59 E-value=68 Score=24.90 Aligned_cols=74 Identities=14% Similarity=0.208 Sum_probs=46.6
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCCCCCcEEEEEEeeCCCCCCCCCcccccCCCCCEEEEEcEEEE
Q 021601 126 SDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVL 205 (310)
Q Consensus 126 s~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~Gg~Wat~GG~~~~d~~~aPf~a~~~~~~v 205 (310)
...||.-.|.=....++..||+........... ...-+.....++.||........ ..-....|.--+++++|
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~-----~~~~~~~~~~l~iGg~~~~~~~~--~~~~~~~f~Gci~~l~v 125 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSS-----SSDSLDPDGSLYIGGLPESNQPS--GSVDTPGFVGCIRDLRV 125 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSST-----THHCBESEEEEEESSTTTTCTCT--TSSTTSB-EEEEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEecccc-----ceecccCCCCEEEecccCccccc--cccCCCCcEEEcCeEEE
Confidence 467999999999999999999999888764321 00123344457777765421111 01115667777777776
Q ss_pred e
Q 021601 206 H 206 (310)
Q Consensus 206 ~ 206 (310)
.
T Consensus 126 n 126 (128)
T PF02210_consen 126 N 126 (128)
T ss_dssp T
T ss_pred C
Confidence 5
No 30
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=62.69 E-value=1.2e+02 Score=27.38 Aligned_cols=135 Identities=12% Similarity=0.270 Sum_probs=70.7
Q ss_pred ceEeEEEEEEEEecCCCCCeeEEeeeeeecCCCCC-------CCceEEEEEccCcCCCcceEEEeEEcCCCcCCCCceEE
Q 021601 47 LYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEK-------NHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERY 119 (310)
Q Consensus 47 ~f~YG~~EaRiKlp~g~s~Gv~~AFwl~~~~~~~~-------~~~EID~E~lG~~~g~p~~vqTNv~~~G~~~~~re~~~ 119 (310)
.+.-|.+-++.|.-.. .+ +-|++-.+++.... ..++|=||+.+.....-+...+.+-..+.
T Consensus 31 ~L~~gTI~i~Fk~~~~--~~-~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~--------- 98 (190)
T PF02973_consen 31 KLEEGTIVIRFKSDSN--SG-IQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGG--------- 98 (190)
T ss_dssp T-SSEEEEEEEEESS---SS-EEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SE---------
T ss_pred cccccEEEEEEecCCC--cc-eeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEeccc---------
Confidence 3556888888887553 44 45666666643210 12377788887654332222222111110
Q ss_pred ecCCCCCCCcEEEEEEEc--CCeEEEEEcCeeEEEEeccccCCCCCC-C--CCcEEEEEEeeCCCCCCCCCcccccCCCC
Q 021601 120 NLWFDPSDDFHQYSILWT--DSQIIFYIDGIPIREFKRTASMGGDFP-A--KPMSLYATIWDGSDWATNGGKYRVNYKYA 194 (310)
Q Consensus 120 ~l~~dps~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P-~--~Pm~l~lnlW~Gg~Wat~GG~~~~d~~~a 194 (310)
.-....||+=++.=+ ..+..+||||..+.++.... ..|- + .+-.+.| ||.....-...
T Consensus 99 ---~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n~~~i-----------G~t~R~g~~~y 161 (190)
T PF02973_consen 99 ---YKNNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLNSVQI-----------GGTNRAGSNAY 161 (190)
T ss_dssp ---ETTEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT--EEEE-----------SSEEETTEEES
T ss_pred ---ccCCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCceEEE-----------cceEeCCCcee
Confidence 012356788777776 67799999999988886442 2342 1 1222222 33222222468
Q ss_pred CEEEEEcEEEEeeeec
Q 021601 195 PYVTEFSDFVLHGCSF 210 (310)
Q Consensus 195 Pf~a~~~~~~v~~c~~ 210 (310)
||.-.|++++|+.++-
T Consensus 162 ~f~G~I~~l~iYn~aL 177 (190)
T PF02973_consen 162 PFNGTIDNLKIYNRAL 177 (190)
T ss_dssp --EEEEEEEEEESS--
T ss_pred cccceEEEEEEEcCcC
Confidence 9999999999996643
No 31
>smart00282 LamG Laminin G domain.
Probab=51.65 E-value=1.2e+02 Score=24.20 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=23.6
Q ss_pred CCCcEEEEEEEcCCeEEEEEcCeeEEEE
Q 021601 126 SDDFHQYSILWTDSQIIFYIDGIPIREF 153 (310)
Q Consensus 126 s~dfHtY~i~Wtp~~I~fyVDG~~vr~~ 153 (310)
...||.-.|.-....+.++|||......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 3579999999999999999999765443
No 32
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=23.19 E-value=1.3e+02 Score=26.40 Aligned_cols=56 Identities=21% Similarity=0.449 Sum_probs=36.2
Q ss_pred eEEecCCCCCCCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCC--CCCC--CCCcEEEEE
Q 021601 117 ERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMG--GDFP--AKPMSLYAT 173 (310)
Q Consensus 117 ~~~~l~~dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g--~~~P--~~Pm~l~ln 173 (310)
.++++|. .+.|=|.|+|.-..+.+..+++|..+++--.--..| ..|- +.|..|++-
T Consensus 93 k~~~~W~-~t~dg~~~RivL~kdtm~~w~NG~~l~TageFVd~GT~ThF~lg~~~c~i~A~ 152 (187)
T KOG4352|consen 93 KQYRLWL-YTDDGQEYRIVLKKDTMSLWVNGDELRTAGEFVDGGTDTHFLLGDTECVIQAR 152 (187)
T ss_pred hheeEEE-EecCCceEEEEEeccceeeEEcCccccccceeecCCeeEEEEecCCcEEEEEe
Confidence 4566664 244559999999999999999999887642111112 2333 566666553
No 33
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=22.27 E-value=6.3e+02 Score=23.37 Aligned_cols=59 Identities=20% Similarity=0.450 Sum_probs=37.1
Q ss_pred CCcEEEEEEEcCCeEEEEEcCeeEEEEeccccCCCCCCCCCcEEEEEEeeCCCCCCCCCcccccC-CCCCEEEEEcEEEE
Q 021601 127 DDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYRVNY-KYAPYVTEFSDFVL 205 (310)
Q Consensus 127 ~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~Gg~Wat~GG~~~~d~-~~aPf~a~~~~~~v 205 (310)
..|+.-.|.-....|.|.|||.+|........ ...|- -.+|+ |-. .=+|..|.|+++.|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPv----------------l~~G~--IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPV----------------LRGGR--IGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS-------------------SBE--EEEEEETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCc----------------ccCcE--eeeeccchhhhhhccccC
Confidence 36666788889999999999999999975421 11120 01444 222 24789999999876
No 34
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=21.91 E-value=1.3e+02 Score=24.33 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCCCcEEEEEEEcCCeEEEEEcCeeEEEEe
Q 021601 125 PSDDFHQYSILWTDSQIIFYIDGIPIREFK 154 (310)
Q Consensus 125 ps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 154 (310)
+.++-|++.+. ..+.++++|||++|-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 46778888888 788899999999996655
No 35
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=20.26 E-value=1.2e+02 Score=23.18 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=21.1
Q ss_pred eEEEEEcCeeEEEEeccccCCCCCC-CCCcEEEEEEe
Q 021601 140 QIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIW 175 (310)
Q Consensus 140 ~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW 175 (310)
.+.|||||+++.+...... ..|+ ..|-.-.|.+-
T Consensus 44 ~~~W~vdg~~~g~~~~~~~--~~~~~~~~G~h~l~vv 78 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQ--LFWQPDRPGEHTLTVV 78 (89)
T ss_pred cEEEEECCEEcccCCCCCe--EEeCCCCCeeEEEEEE
Confidence 6889999999966543321 2333 36666666653
Done!