Query 021602
Match_columns 310
No_of_seqs 121 out of 822
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14481 dihydroxyacetone kina 100.0 6E-107 1E-111 777.6 29.9 263 1-268 68-331 (331)
2 TIGR02363 dhaK1 dihydroxyaceto 100.0 9E-107 2E-111 776.1 29.6 260 1-265 69-329 (329)
3 TIGR02362 dhaK1b probable dihy 100.0 1E-106 3E-111 774.1 29.4 260 1-265 65-326 (326)
4 PRK14483 DhaKLM operon coactiv 100.0 2E-106 5E-111 773.0 29.4 260 1-265 67-329 (329)
5 PF02733 Dak1: Dak1 domain; I 100.0 2E-107 4E-112 780.7 21.0 267 1-268 52-325 (325)
6 PRK11468 dihydroxyacetone kina 100.0 3E-106 7E-111 776.9 30.0 267 1-268 68-355 (356)
7 PRK14479 dihydroxyacetone kina 100.0 8E-101 2E-105 779.3 29.5 262 1-267 67-329 (568)
8 TIGR02361 dak_ATP dihydroxyace 100.0 1.3E-99 3E-104 771.3 31.7 267 1-267 66-341 (574)
9 PTZ00375 dihydroxyacetone kina 100.0 1.1E-98 2E-103 764.5 29.1 265 1-267 70-348 (584)
10 KOG2426 Dihydroxyacetone kinas 100.0 7E-97 2E-101 726.5 25.1 293 1-294 71-378 (582)
11 COG2376 DAK1 Dihydroxyacetone 100.0 1.8E-79 3.8E-84 586.2 21.9 255 1-265 67-323 (323)
12 TIGR03599 YloV DAK2 domain fus 91.9 12 0.00027 39.1 17.5 180 3-230 336-519 (530)
13 PRK11377 dihydroxyacetone kina 87.9 3.1 6.7E-05 42.9 9.3 176 15-221 48-240 (473)
14 TIGR02364 dha_pts dihydroxyace 86.0 4.3 9.3E-05 34.6 7.7 79 15-113 44-124 (125)
15 PRK14484 phosphotransferase ma 85.1 2.3 5E-05 36.4 5.6 77 15-113 44-120 (124)
16 PRK09314 bifunctional 3,4-dihy 79.0 2.6 5.7E-05 41.8 4.3 55 4-59 252-310 (339)
17 PRK00393 ribA GTP cyclohydrola 73.6 5.9 0.00013 36.0 4.8 35 4-38 53-91 (197)
18 PRK12485 bifunctional 3,4-dihy 72.7 4.4 9.4E-05 40.7 4.0 57 3-59 255-340 (369)
19 PF00925 GTP_cyclohydro2: GTP 72.2 2.6 5.5E-05 37.4 2.0 61 4-65 51-146 (169)
20 TIGR00505 ribA GTP cyclohydrol 71.0 7.3 0.00016 35.2 4.8 34 4-37 50-87 (191)
21 cd00641 GTP_cyclohydro2 GTP cy 70.0 8.2 0.00018 34.8 4.9 34 4-37 52-89 (193)
22 PF02645 DegV: Uncharacterised 68.2 16 0.00034 34.5 6.5 195 12-245 61-277 (280)
23 PLN02831 Bifunctional GTP cycl 66.1 6.8 0.00015 40.3 3.9 39 3-41 290-332 (450)
24 PRK14019 bifunctional 3,4-dihy 64.9 8.7 0.00019 38.5 4.3 57 3-59 255-337 (367)
25 TIGR00762 DegV EDD domain prot 64.1 19 0.00042 33.8 6.3 95 12-122 60-157 (275)
26 PF00975 Thioesterase: Thioest 62.7 15 0.00033 32.0 5.0 82 138-235 23-106 (229)
27 cd00615 Orn_deC_like Ornithine 60.9 24 0.00052 33.0 6.3 54 12-69 138-191 (294)
28 PRK08815 GTP cyclohydrolase; P 59.7 8.6 0.00019 38.7 3.2 40 3-43 223-266 (375)
29 COG1105 FruK Fructose-1-phosph 57.8 50 0.0011 32.6 8.0 126 113-262 67-199 (310)
30 PRK05340 UDP-2,3-diacylglucosa 56.2 16 0.00034 33.4 4.1 36 5-40 37-81 (241)
31 PRK09311 bifunctional 3,4-dihy 53.6 15 0.00032 37.3 3.7 39 3-41 256-298 (402)
32 COG3412 Uncharacterized protei 52.1 23 0.0005 30.8 4.2 80 14-112 44-123 (129)
33 PTZ00397 macrophage migration 47.0 42 0.0009 27.4 4.8 42 189-230 58-99 (116)
34 TIGR01854 lipid_A_lpxH UDP-2,3 46.9 29 0.00063 31.5 4.3 50 5-59 35-93 (231)
35 TIGR00619 sbcd exonuclease Sbc 45.0 1.1E+02 0.0023 28.5 7.9 54 5-60 44-105 (253)
36 PTZ00450 macrophage migration 44.4 25 0.00055 29.4 3.2 42 190-231 59-100 (113)
37 PRK11340 phosphodiesterase Yae 44.3 51 0.0011 30.9 5.6 55 5-59 85-144 (271)
38 PF03793 PASTA: PASTA domain; 43.4 44 0.00096 23.9 4.0 32 34-67 1-32 (63)
39 PRK09319 bifunctional 3,4-dihy 42.6 28 0.00061 36.9 3.9 38 3-41 261-302 (555)
40 cd07385 MPP_YkuE_C Bacillus su 42.2 67 0.0015 28.2 5.8 54 5-58 37-92 (223)
41 PF13684 Dak1_2: Dihydroxyacet 42.0 3.4E+02 0.0073 26.4 17.8 181 3-229 118-301 (313)
42 PF02633 Creatininase: Creatin 41.8 1.3E+02 0.0029 27.5 7.9 63 151-227 72-135 (237)
43 PF02955 GSH-S_ATP: Prokaryoti 41.4 61 0.0013 29.1 5.4 57 180-237 76-159 (173)
44 cd03465 URO-D_like The URO-D _ 41.3 76 0.0016 29.9 6.3 106 12-132 206-315 (330)
45 PRK09318 bifunctional 3,4-dihy 40.9 23 0.0005 35.9 2.9 40 3-43 239-281 (387)
46 COG0616 SppA Periplasmic serin 39.8 1.1E+02 0.0024 29.7 7.3 60 165-236 83-142 (317)
47 PF08353 DUF1727: Domain of un 38.9 37 0.00081 28.5 3.4 32 10-41 81-112 (113)
48 COG1307 DegV Uncharacterized p 37.2 3.2E+02 0.007 26.2 9.9 194 14-247 64-280 (282)
49 PRK05647 purN phosphoribosylgl 37.1 64 0.0014 29.4 4.9 45 14-63 13-57 (200)
50 PLN03065 isocitrate dehydrogen 36.9 3.7E+02 0.008 28.3 10.8 135 22-175 324-474 (483)
51 TIGR02326 transamin_PhnW 2-ami 34.5 1.2E+02 0.0026 28.8 6.6 57 10-71 58-115 (363)
52 KOG3997 Major apurinic/apyrimi 34.2 11 0.00023 36.1 -0.7 44 87-131 142-185 (281)
53 TIGR00639 PurN phosphoribosylg 33.1 78 0.0017 28.6 4.7 48 10-62 5-55 (190)
54 TIGR00347 bioD dethiobiotin sy 33.1 57 0.0012 27.6 3.7 38 29-66 129-166 (166)
55 cd06167 LabA_like LabA_like pr 32.5 1E+02 0.0022 25.5 5.1 43 20-66 89-132 (149)
56 PRK07198 hypothetical protein; 32.5 69 0.0015 32.9 4.7 38 3-41 246-291 (418)
57 COG4175 ProV ABC-type proline/ 32.4 67 0.0014 32.5 4.5 119 89-249 10-137 (386)
58 PF12327 FtsZ_C: FtsZ family, 31.7 1.4E+02 0.0031 23.9 5.6 74 163-247 16-91 (95)
59 COG1416 Uncharacterized conser 30.4 1.1E+02 0.0024 26.0 4.9 71 164-241 13-83 (112)
60 PF13500 AAA_26: AAA domain; P 30.3 31 0.00067 30.2 1.7 39 29-67 129-167 (199)
61 TIGR03588 PseC UDP-4-keto-6-de 30.3 1.1E+02 0.0024 29.5 5.6 54 14-71 105-158 (380)
62 KOG1526 NADP-dependent isocitr 30.0 36 0.00079 34.0 2.2 131 24-175 267-414 (422)
63 PF07788 DUF1626: Protein of u 29.9 46 0.001 26.0 2.3 24 31-59 47-70 (70)
64 COG1732 OpuBC Periplasmic glyc 29.6 1.1E+02 0.0024 30.2 5.4 85 121-237 15-99 (300)
65 cd07404 MPP_MS158 Microscilla 29.5 72 0.0016 26.9 3.7 35 5-39 31-65 (166)
66 KOG2743 Cobalamin synthesis pr 29.3 88 0.0019 31.5 4.7 45 168-219 71-120 (391)
67 TIGR01822 2am3keto_CoA 2-amino 29.1 1.5E+02 0.0033 28.4 6.3 54 13-70 151-209 (393)
68 PRK04946 hypothetical protein; 28.9 1.4E+02 0.0031 27.1 5.7 71 161-250 103-176 (181)
69 PF01187 MIF: Macrophage migra 27.8 46 0.001 27.3 2.2 41 190-230 57-97 (114)
70 COG0523 Putative GTPases (G3E 26.6 59 0.0013 32.0 3.0 29 169-204 16-44 (323)
71 cd05013 SIS_RpiR RpiR-like pro 26.4 1.9E+02 0.0041 22.8 5.5 57 10-70 42-98 (139)
72 KOG2948 Predicted metal-bindin 26.3 65 0.0014 31.9 3.2 53 14-69 197-253 (327)
73 COG0336 TrmD tRNA-(guanine-N1) 26.2 45 0.00097 31.9 2.0 58 16-73 64-133 (240)
74 COG0024 Map Methionine aminope 25.8 6E+02 0.013 24.4 11.4 124 89-231 24-171 (255)
75 PF12850 Metallophos_2: Calcin 25.2 83 0.0018 25.6 3.2 29 5-40 30-58 (156)
76 PRK06703 flavodoxin; Provision 24.8 4.1E+02 0.0089 22.2 9.1 101 107-225 16-117 (151)
77 PF13689 DUF4154: Domain of un 24.7 51 0.0011 28.0 1.9 22 40-61 115-136 (145)
78 PHA02097 hypothetical protein 24.1 35 0.00077 25.5 0.7 23 25-48 15-37 (59)
79 PF08708 PriCT_1: Primase C te 24.1 1.2E+02 0.0027 22.4 3.8 32 86-117 13-49 (71)
80 PRK00115 hemE uroporphyrinogen 24.0 1.2E+02 0.0027 29.3 4.7 106 11-132 221-328 (346)
81 PF00975 Thioesterase: Thioest 23.2 1.5E+02 0.0032 25.8 4.6 49 17-67 53-101 (229)
82 COG0420 SbcD DNA repair exonuc 22.3 79 0.0017 31.0 3.0 46 5-50 45-97 (390)
83 PLN02625 uroporphyrin-III C-me 22.2 2E+02 0.0044 26.8 5.6 66 13-104 75-144 (263)
84 COG2100 Predicted Fe-S oxidore 21.9 3E+02 0.0066 28.0 6.9 99 7-131 168-267 (414)
85 PF01866 Diphthamide_syn: Puta 21.7 2.3E+02 0.005 27.2 6.0 46 185-234 207-252 (307)
86 smart00740 PASTA PASTA domain. 21.5 1.8E+02 0.0038 19.9 4.0 33 34-68 5-37 (66)
87 TIGR03468 HpnG hopanoid-associ 21.3 1.9E+02 0.0042 26.2 5.1 84 38-121 124-210 (212)
88 PRK08057 cobalt-precorrin-6x r 21.2 1.6E+02 0.0034 27.8 4.7 70 197-278 8-79 (248)
89 COG0807 RibA GTP cyclohydrolas 20.7 1.9E+02 0.0041 26.8 4.9 56 4-59 52-142 (193)
90 TIGR01108 oadA oxaloacetate de 20.6 7.6E+02 0.017 26.4 10.0 96 10-117 51-191 (582)
91 TIGR01464 hemE uroporphyrinoge 20.5 1.7E+02 0.0036 28.1 4.8 108 11-134 215-325 (338)
92 PF08726 EFhand_Ca_insen: Ca2+ 20.4 73 0.0016 24.7 1.8 20 14-33 3-22 (69)
93 cd01455 vWA_F11C1-5a_type Von 20.1 5.4E+02 0.012 23.6 7.7 74 162-266 93-171 (191)
94 PF11195 DUF2829: Protein of u 20.0 90 0.0019 24.2 2.3 16 44-60 1-16 (75)
No 1
>PRK14481 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=6.1e-107 Score=777.64 Aligned_cols=263 Identities=47% Similarity=0.758 Sum_probs=257.8
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 021602 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (310)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~gR 80 (310)
|||||||||||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++.+++|
T Consensus 68 mLdaav~G~VFaSPs~~~Il~ai~av~~~~GvL~iv~NYtGD~lnF~lA~E~a~~eGi~v~~V~v~DDva~~~~~~~~~R 147 (331)
T PRK14481 68 MLDAAVCGAVFTSPTPDQILEAIKAVDTGAGVLLIVKNYSGDVMNFEMAAELAEMEGIEVASVVVDDDVAVEDSLYTQGR 147 (331)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHhCCCCEEEEEeCCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877778899
Q ss_pred ccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCCCCCeeEEeccccCCCCccccc
Q 021602 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (310)
Q Consensus 81 RGlAGtvlv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emEiGmGIHGEpG~~r~~ 159 (310)
||+||++||||||||||++|+||+||++++|++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAG~vlv~KiaGAaA~~G~sL~ev~~~a~~~~~~~~Tigval~~ct~Pg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 227 (331)
T PRK14481 148 RGVAGTVFVHKIAGAAAEAGASLDEVKALAEKVNPNIRSMGVALSPCTVPAVGKPGFDLGDDEIEIGIGIHGEPGRRREK 227 (331)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCCccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 021602 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (310)
Q Consensus 160 ~~sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm~ 239 (310)
+.|+++++++|+++|+++ +++++||+++|||||||+||.||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 228 ~~~a~~l~~~m~~~ll~~----~~~~~gd~v~lLvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~i~r~~vG~~~TSldm~ 302 (331)
T PRK14481 228 LKPADEIAEELLEKILED----LKLVAGDEVLVLVNGMGATPLMELYIVYNDVAELLEER-GVTVARSLVGNYMTSLDMA 302 (331)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999996 79999999999999999999999999999999999887 9999999999999999999
Q ss_pred cceEEEecccHHHHHhhcCCCCCCCCCCC
Q 021602 240 GFSISIMKADEVILKHLDATTKAPHWPVG 268 (310)
Q Consensus 240 GfSiTLl~ldd~ll~lldaP~~ap~w~~~ 268 (310)
||||||+++||+|++|||+||++|+|+|.
T Consensus 303 G~SiTLl~ld~el~~~ldap~~~~~w~~~ 331 (331)
T PRK14481 303 GFSITLLKLDDELLELLDAPVDTPALRWG 331 (331)
T ss_pred ceEEEEeecCHHHHHHhCCCCcCCCCCCC
Confidence 99999999999999999999999999763
No 2
>TIGR02363 dhaK1 dihydroxyacetone kinase, DhaK subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form (EC 2.7.1.-) with a phosphoprotein donor related to PTS transport proteins. This family represents the DhaK subunit of the latter type of dihydroxyacetone kinase, but it specifically excludes the DhaK paralog DhaK2 (TIGR02362) found in the same operon as DhaK and DhaK in the Firmicutes.
Probab=100.00 E-value=8.7e-107 Score=776.08 Aligned_cols=260 Identities=43% Similarity=0.704 Sum_probs=255.8
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 021602 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (310)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~gR 80 (310)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++.++||
T Consensus 69 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~iv~NYtGD~lnF~mA~E~a~~eGi~v~~V~V~DDva~~~~~~~~~R 148 (329)
T TIGR02363 69 MLDAAVPGEVFTSPTPDQILEAIKAVDQGAGVLLIVKNYTGDVMNFEMAAELAEDEGIKVATVVVDDDIAVEDSLYTAGR 148 (329)
T ss_pred ccceeeeccccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHhccHHHHHHHHHHcCCcEEEEEECCcccCCCCccCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877678899
Q ss_pred ccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCCCCCeeEEeccccCCCCccccc
Q 021602 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (310)
Q Consensus 81 RGlAGtvlv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emEiGmGIHGEpG~~r~~ 159 (310)
||+|||+||||||||||++|+||+||++++|++++|++||||+|++||+|| ++|+|+|++||||||||||||||++|.+
T Consensus 149 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGval~~ctvPg~~~~~f~l~~~emE~GmGIHGEpG~~r~~ 228 (329)
T TIGR02363 149 RGVAGTVFVHKIAGAAAEKGASLDELKSLGEKVNPNTKSIGVALTACTVPAVGKPGFDLADDEMEIGVGIHGEPGIRREK 228 (329)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 021602 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (310)
Q Consensus 160 ~~sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm~ 239 (310)
+.|+++++++|+++|+++ +++++||+++|||||||+||.||||++++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 229 ~~~a~~l~~~l~~~l~~~----~~~~~gd~v~vlvN~LG~ts~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 303 (329)
T TIGR02363 229 MKSSDEIADELLDKLLDD----LGLQSGDRVIVLVNGMGATPLMELYIFYNDVQRLLEQR-GVNVARTLVGNYMTSLDMA 303 (329)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEeecccccCCCC
Confidence 999999999999999996 78999999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEecccHHHHHhhcCCCCCCCC
Q 021602 240 GFSISIMKADEVILKHLDATTKAPHW 265 (310)
Q Consensus 240 GfSiTLl~ldd~ll~lldaP~~ap~w 265 (310)
||||||+++|||+++|||+||++|+|
T Consensus 304 G~SiTLl~ld~el~~~ldap~~~~~w 329 (329)
T TIGR02363 304 GFSLTLLKLDDELLELWDAPVTTIAL 329 (329)
T ss_pred ceEEEEeeCCHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999
No 3
>TIGR02362 dhaK1b probable dihydroxyacetone kinase DhaK1b subunit. Two types of dihydroxyacetone kinase (glycerone kinase) are described. In yeast and a few bacteria, e.g. Citrobacter freundii, the enzyme is a single chain that uses ATP as phosphoryl donor and is designated EC 2.7.1.29. By contract, E. coli and many other bacterial species have a multisubunit form with a phosphoprotein donor related to PTS transport proteins. This family represents a protein, unique to the Firmicutes (low GC Gram-positives), that appears to be a divergent second copy of the K subunit of that complex; its gene is always found in operons with the other three proteins of the complex.
Probab=100.00 E-value=1.3e-106 Score=774.09 Aligned_cols=260 Identities=35% Similarity=0.551 Sum_probs=253.4
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 021602 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (310)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~gR 80 (310)
|||||||||||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++...||
T Consensus 65 mLdAav~G~VFaSPs~~~I~~ai~av~~~~GvL~ivkNYtGD~lNF~mA~E~a~~eGi~v~~V~V~DDvA~~~~~~~~~R 144 (326)
T TIGR02362 65 MLSAAIMGDVFVPPTAQDILEAIRQVDRGKGVFVIIKNFEADLSEFSQAIQQARQEGRQIKYIIVHDDISVEHESFKQRR 144 (326)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEeccCHHHHhhHHHHHHHHHHcCCcEEEEEECCcccCCCCcccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999654545699
Q ss_pred ccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCCCCCeeEEeccccCCCCccccc
Q 021602 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (310)
Q Consensus 81 RGlAGtvlv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emEiGmGIHGEpG~~r~~ 159 (310)
||+||||||||||||||++|+||+||+++++++++|++||||||++||+|+ ++|+|+|++||||||||||||||++|.+
T Consensus 145 RGlAGtv~v~KiaGAaAe~G~sL~ev~~~a~~~~~~~~Tigval~~c~~Pg~~~~~f~l~~~emE~G~GIHGEpG~~r~~ 224 (326)
T TIGR02362 145 RGVAGTILVHKILGAAAAEGASLDELEHIAAALVTNIATIGVAAKSARIPGQSTPSFDLEEGEIYYGIGIHGEPGYRTEP 224 (326)
T ss_pred CchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeccccccCCCCCCCCCccCCCcEEeccccCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 021602 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (310)
Q Consensus 160 ~~sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm~ 239 (310)
++|+++++++|+++|+++ +++++||+++|||||||+||.|||||+++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 225 ~~~a~elv~~l~~~ll~~----~~~~~gd~v~vlvN~LG~t~~lEl~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm~ 299 (326)
T TIGR02362 225 FVSSEHLAVELVNKLKLK----FRWQADDHYAVLVNNLGGTTPMEQMVFNNDVHELLALE-ALHLPFIKVGTFLTSLDMH 299 (326)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCCC
Confidence 999999999999999996 78999999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEecc-cHHHHHhhcCCCCCCCC
Q 021602 240 GFSISIMKA-DEVILKHLDATTKAPHW 265 (310)
Q Consensus 240 GfSiTLl~l-dd~ll~lldaP~~ap~w 265 (310)
||||||+++ |+||++|||+||++|+|
T Consensus 300 G~SiTll~l~d~el~~~ldap~~~~~~ 326 (326)
T TIGR02362 300 GLSLTLLRLKDPQWLDYLNAPVDAAAW 326 (326)
T ss_pred ccEEEEEeCCcHHHHHHhCCCCCCCCC
Confidence 999999999 56999999999999999
No 4
>PRK14483 DhaKLM operon coactivator DhaQ; Provisional
Probab=100.00 E-value=2.2e-106 Score=772.95 Aligned_cols=260 Identities=37% Similarity=0.588 Sum_probs=254.3
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCC-CCCCCC
Q 021602 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPP-PRGIAG 79 (310)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~-~~~~~g 79 (310)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++ +++..|
T Consensus 67 mLdAav~G~VFaSPs~~qI~~ai~av~~~~GvL~ivkNYtGDvlnF~mA~E~a~~eGi~v~~VvV~DDva~~~~~~~~~~ 146 (329)
T PRK14483 67 MLTAAVNGSIFTPPTAEQILAATRLVPKGKGVFFIIKNFEADVAEFSAAIQIARQEGRQIKYIIVHDDISVEDDASFNKR 146 (329)
T ss_pred ccceeEeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCcccCCCccccCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987 655669
Q ss_pred cccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCCCCCeeEEeccccCCCCcccc
Q 021602 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (310)
Q Consensus 80 RRGlAGtvlv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emEiGmGIHGEpG~~r~ 158 (310)
|||+||||||||||||||++|+||+||++++|++++|++||||||++|++|| ++|.|+|++||||||||||||||++|.
T Consensus 147 RRGlAGtvlv~KiaGAaA~~G~~L~ev~~~a~~~~~~~~Tigval~~c~vPg~~~~~f~l~~~emE~GmGIHGEpG~~r~ 226 (329)
T PRK14483 147 RRGVAGTVLLHKILGAAALEGASLDELEQLGLSLTENIATLGVALSPANLPVAGLPSFDLNEDEISYGIGIHGEPGYRKE 226 (329)
T ss_pred CCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeecccccccCCCCCCCcccCCCcEEeccccCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999 889999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCC
Q 021602 159 DLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDM 238 (310)
Q Consensus 159 ~~~sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm 238 (310)
++.|+++++++|+++|+++ +++++||+|+|||||||+||.|||||+++++.++|+++ ||+|+|+|+|+|||||||
T Consensus 227 ~~~~a~~l~~~l~~~ll~~----~~~~~gd~v~vlVN~LG~ts~~El~i~~~~v~~~L~~~-gi~v~r~~vG~~~TSldm 301 (329)
T PRK14483 227 PFSSSEILAIELVNKLKSK----YRWQKGDNFILLINGLGATTLMEQYIFANDIRRLLELE-GLQITFVKVGTLLTSLDM 301 (329)
T ss_pred CCCCHHHHHHHHHHHHHhh----cCcCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeEeecccCccCC
Confidence 9999999999999999986 78999999999999999999999999999999999888 999999999999999999
Q ss_pred CcceEEEecc-cHHHHHhhcCCCCCCCC
Q 021602 239 AGFSISIMKA-DEVILKHLDATTKAPHW 265 (310)
Q Consensus 239 ~GfSiTLl~l-dd~ll~lldaP~~ap~w 265 (310)
+||||||+++ |+||++|||+||++|+|
T Consensus 302 ~G~SiTLl~l~d~el~~~ldap~~~~~w 329 (329)
T PRK14483 302 KGISLTLLKVKDPDWLDWLKAPTRAAAW 329 (329)
T ss_pred CccEEEEEeCCcHHHHHHhcCCCCCCCC
Confidence 9999999999 56999999999999999
No 5
>PF02733 Dak1: Dak1 domain; InterPro: IPR004006 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the kinase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 1UN8_A 1UN9_B 3PNM_A 1UOD_B 3PNO_D 3PNK_A 3PNQ_B 1OI2_B 1OI3_A 3PNL_A ....
Probab=100.00 E-value=1.6e-107 Score=780.68 Aligned_cols=267 Identities=53% Similarity=0.860 Sum_probs=226.4
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCC-CC
Q 021602 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGI-AG 79 (310)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~-~g 79 (310)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||++++++. +|
T Consensus 52 mLdAav~G~VFaSPs~~qI~~ai~~~~~~~Gvl~iv~NYtGD~lNF~~A~E~a~~~Gi~v~~v~v~DDva~~~~~~~~~g 131 (325)
T PF02733_consen 52 MLDAAVCGDVFASPSADQILAAIKAVDSGKGVLLIVKNYTGDVLNFGMAAEKARAEGIKVEMVIVGDDVASAPSKNSLVG 131 (325)
T ss_dssp SBSEEEEEEETS---HHHHHHHHHHH-SSS-EEEEEESSHHHHHHHHHHHHHHHHTT--EEEEEE--B-SSSSSTTS-SS
T ss_pred ccceEeeCCCcCCCCHHHHHHHHHhccCCCCEEEEEecchHHHhhHHHHHHHHHhCCCCEEEEEecCccccCCccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998876 99
Q ss_pred cccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCCCCCeeEEeccccCCCCcccc
Q 021602 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (310)
Q Consensus 80 RRGlAGtvlv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emEiGmGIHGEpG~~r~ 158 (310)
|||+||+||||||+||+||+|+||+||++++++++++++||||+|++|++|+ +++.|+|++||||||||||||||++|.
T Consensus 132 RRGlAG~v~v~KiaGAaAe~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~f~L~~~emE~GmGIHGEpG~~r~ 211 (325)
T PF02733_consen 132 RRGLAGTVLVHKIAGAAAERGASLDEVKELAEKANDNLRTIGVALSPCTVPGRGKPSFELPEDEMEIGMGIHGEPGVERI 211 (325)
T ss_dssp S---TTHHHHHHHHHHHHHTT--HHHHHHHHHHHHTTEEEEEEEEE--EETTTCSSSS-B-TTEEEETE-TTS---SEEE
T ss_pred cccccchhHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhceeeeeccCcCCCCCCCCcccCCCCCEEeccccCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999 889999999999999999999999999
Q ss_pred cCCC-HHHHHHHHHHHHHccc---CCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhh-hhhcCCeEEEeeeeccc
Q 021602 159 DLQP-VDVVVSHVLKQILSTE---TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNL-QLEHGLAVERVYTGSFM 233 (310)
Q Consensus 159 ~~~s-a~elv~~ml~~ll~~~---r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L-~~~~gi~v~r~~vG~~~ 233 (310)
++.| +++++++|+++|+++. |+|+++++||+++|||||||+||.||||++++++.++| +++ ||+|+|+|+|+||
T Consensus 212 ~~~~~a~elv~~ml~~ll~~~~~~r~~~~~~~gd~v~llVNnLG~ts~lEl~ii~~~v~~~L~~~~-gi~v~r~~vG~~~ 290 (325)
T PF02733_consen 212 KLKPSADELVDEMLDKLLDDLDPDRAFLPLKEGDEVALLVNNLGGTSQLELYIIAREVLEQLEEEK-GIKVVRVYVGNFM 290 (325)
T ss_dssp E--B-HHHHHHHHHHHHHHCCHCCEEEHTG-TT-EEEEEEEE-BSS-HHHHHHHHHHHHHHH-HHT-TEEEEEEEEE-SS
T ss_pred CCCCcHHHHHHHHHHHHhccCcccccccccCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHhc-CceEEEeEEEccc
Confidence 9999 9999999999999874 67789999999999999999999999999999999999 666 9999999999999
Q ss_pred cccCCCcceEEEecccHHHHHhhcCCCCCCCCCCC
Q 021602 234 TSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (310)
Q Consensus 234 TSldm~GfSiTLl~ldd~ll~lldaP~~ap~w~~~ 268 (310)
|||||+||||||+++|+++++|||+||++|+|+|+
T Consensus 291 TSLdm~GfSiTLl~ld~e~~~~~~ap~~~pa~~~g 325 (325)
T PF02733_consen 291 TSLDMAGFSITLLKLDDELKELLDAPTDTPAWRWG 325 (325)
T ss_dssp --TTBEEEEEEEEEETSHHHHHHHS-EESSS-EE-
T ss_pred CCCCCceeEEEeeecCHHHHHHhcCcccCccCCCC
Confidence 99999999999999999999999999999999974
No 6
>PRK11468 dihydroxyacetone kinase subunit DhaK; Provisional
Probab=100.00 E-value=3.2e-106 Score=776.91 Aligned_cols=267 Identities=38% Similarity=0.624 Sum_probs=258.5
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 021602 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (310)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~gR 80 (310)
||||||||+||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+++++..+||
T Consensus 68 mLdAAv~G~VFaSPs~~qI~~ai~av~~~~GvLlivkNYtGDvlNF~mAaE~a~~eGi~v~~V~V~DDva~~~~~~~~gR 147 (356)
T PRK11468 68 MLDGACPGEIFTSPTPDQMFECAMQVDGGEGVLLIIKNYTGDVLNFETATELLHDSGVKVTTVLIDDDVAVKDSLYTAGR 147 (356)
T ss_pred cccceeeccccCCCCHHHHHHHHHhhcCCCCEEEEecccHHhhccHHHHHHHHHhCCCcEEEEEeCCcccCCCCcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877778999
Q ss_pred ccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCCCCCeeEEeccccCCCCccccc
Q 021602 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (310)
Q Consensus 81 RGlAGtvlv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emEiGmGIHGEpG~~r~~ 159 (310)
||+|||||||||+||||++|+||+||++++++++++++||||||++|++|+ ++|+|+|++||||||||||||||++|.+
T Consensus 148 RGlAGtvlv~KiaGAaAe~G~sL~ev~~~a~~~~~~~~TiGvaL~~ctvP~~~~~~f~L~~~emE~GmGIHGEpG~~r~~ 227 (356)
T PRK11468 148 RGVANTVLIEKLVGAAAERGYSLDQCAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIHGEPGIDRRP 227 (356)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCcccCCCcEEeccccCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccc--------------------CCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhh
Q 021602 160 LQPVDVVVSHVLKQILSTE--------------------TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE 219 (310)
Q Consensus 160 ~~sa~elv~~ml~~ll~~~--------------------r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~ 219 (310)
+.|+++++++|+++|+++. ...+++++||+|+|||||||+||.+||||+++++.++|+++
T Consensus 228 ~~~a~elv~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~v~vLVNgLG~t~~~El~i~~~~v~~~L~~~ 307 (356)
T PRK11468 228 FSSLDQTVDEMFDTLLENGSYHRTLRFWDRQQGSWQEEEQTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLATRCEQA 307 (356)
T ss_pred CCCHHHHHHHHHHHHHcCcccccchhccccccccccccccccCCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999862 11248899999999999999999999999999999999888
Q ss_pred cCCeEEEeeeeccccccCCCcceEEEecccHHHHHhhcCCCCCCCCCCC
Q 021602 220 HGLAVERVYTGSFMTSLDMAGFSISIMKADEVILKHLDATTKAPHWPVG 268 (310)
Q Consensus 220 ~gi~v~r~~vG~~~TSldm~GfSiTLl~ldd~ll~lldaP~~ap~w~~~ 268 (310)
||+|+|+++|+|||||||+||||||+++||++++|||+||++|+|+|+
T Consensus 308 -gi~v~r~~vG~~~TSldm~G~SiTLl~lddel~~lldap~~~~~w~~~ 355 (356)
T PRK11468 308 -GLTIERNLIGAYCTSLDMQGFSITLLKVDDETLALWDAPVHTPALRWG 355 (356)
T ss_pred -CCEEEEeeeecccccCCCCceEEEEeecCHHHHHHhCCCCCCcccccC
Confidence 999999999999999999999999999999999999999999999764
No 7
>PRK14479 dihydroxyacetone kinase; Provisional
Probab=100.00 E-value=8.5e-101 Score=779.28 Aligned_cols=262 Identities=49% Similarity=0.770 Sum_probs=256.8
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 021602 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (310)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~gR 80 (310)
|||||||||||||||++||++|||++++++|||+||||||||+||||||+|+|+++||+|++|+|+||||+.++.+++||
T Consensus 67 ml~aav~G~vFaSPs~~~i~~ai~~v~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~~g~~v~~v~v~DDva~~~~~~~~~R 146 (568)
T PRK14479 67 MLDAAVCGNVFTSPSADQVYAAIRAADGGAGVLLIVGNYAGDVMNFGLAAELARAEGIDVRTVVVTDDVASAPSGETAGR 146 (568)
T ss_pred ccceeeccCccCCCCHHHHHHHHHhccCCCCEEEEeCCcHHHHhhHHHHHHHHHhcCCcEEEEEeCCcccCCCCCcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999665668899
Q ss_pred ccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCCCCCeeEEeccccCCCCccccc
Q 021602 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (310)
Q Consensus 81 RGlAGtvlv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emEiGmGIHGEpG~~r~~ 159 (310)
||+|||||||||+||+|++|+||+||++++++++++++||||+|++|++|+ ++|.|+|++||||||||||||||++|.+
T Consensus 147 RG~AG~v~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~tigval~~c~~P~~~~~~f~l~~~e~E~G~GiHgEpG~~~~~ 226 (568)
T PRK14479 147 RGIAGTVLVFKIAGAAAEAGLDLDEVAAIARKANARTRSMGVALDGCTLPGAGEPLFTLPEGEMELGLGIHGEPGIEREA 226 (568)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccCcccCCCCCCCCcCCCCeeEeccccCCCCceeecC
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 021602 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (310)
Q Consensus 160 ~~sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm~ 239 (310)
+.|+++++++|+++|+++ +++++||+|+|||||||+||.|||||+++++.++|+++ ||+|+|+|+|+|||||||+
T Consensus 227 ~~~a~~~~~~~~~~l~~~----~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~-~i~v~~~~vG~~~Tsldm~ 301 (568)
T PRK14479 227 LPTADELADRLVDRILAD----LPLGAGERVAVLVNGLGATPYEELFVVYGAVARLLAAR-GITVVRPEVGEFVTSLDMA 301 (568)
T ss_pred CCCHHHHHHHHHHHHHhh----cCCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeeecccccCCCC
Confidence 999999999999999996 78999999999999999999999999999999999888 9999999999999999999
Q ss_pred cceEEEecccHHHHHhhcCCCCCCCCCC
Q 021602 240 GFSISIMKADEVILKHLDATTKAPHWPV 267 (310)
Q Consensus 240 GfSiTLl~ldd~ll~lldaP~~ap~w~~ 267 (310)
||||||+++||+|++|||+||++|+|++
T Consensus 302 G~SiTl~~~d~~~~~~ldap~~~~~~~~ 329 (568)
T PRK14479 302 GASLTLMKLDDELEELWDAPADTPAFRR 329 (568)
T ss_pred ccEEEeeeCCHHHHHHhCCCCCCCCCCC
Confidence 9999999999999999999999999966
No 8
>TIGR02361 dak_ATP dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses (PubMed:11985845).
Probab=100.00 E-value=1.3e-99 Score=771.31 Aligned_cols=267 Identities=54% Similarity=0.862 Sum_probs=256.5
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccC-CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCC-CCCC
Q 021602 1 MLTAAICGDVFASPPVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPP-RGIA 78 (310)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~-~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~-~~~~ 78 (310)
|||||||||||||||++||++|||++++ ++|||+|||||||||||||||+|+|+++||+|++|+|+||||++++ ..++
T Consensus 66 ml~aav~G~vFaSPs~~~i~~ai~~~~~~~~Gvl~iv~NYtGD~lnF~~A~e~a~~eg~~v~~v~v~DDva~~~~~~~~~ 145 (574)
T TIGR02361 66 MLTAAVAGDVFASPSTKQILAAIRAVVGSEAGTLLIVKNYTGDRLNFGLAAEKAKAEGYNVEMVIVGDDVSVGRKKGGLV 145 (574)
T ss_pred ccceeeeccccCCCCHHHHHHHHHHhcCCCCcEEEEecccHHHhhhHHHHHHHHHhCCCcEEEEEeCCccCCCCccCCCC
Confidence 8999999999999999999999999999 9999999999999999999999999999999999999999999763 3478
Q ss_pred CcccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCCCCCCC-CCCCCeeEEeccccCCCCccc
Q 021602 79 GRRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSD-RLGPGKMELGLGIHGEPGAAV 157 (310)
Q Consensus 79 gRRGlAGtvlv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg~~~~f-~L~~~emEiGmGIHGEpG~~r 157 (310)
||||+|||||||||+||+|++|+||+||+++++++++|++||||+|++|++||+++.| +|++||||||||||||||++|
T Consensus 146 ~RRGlAGtv~v~KiaGAaA~~G~~L~ev~~~~~~~~~~~~Tigval~~c~~Pg~~~~~~~l~~~e~E~G~GiHgEpG~~~ 225 (574)
T TIGR02361 146 GRRGLAGTVLVHKIAGAAAARGLSLAEVAKVAQAAADNLVTIGASLDHCHVPGETEAEPELKEDEMELGMGIHNEPGAKR 225 (574)
T ss_pred CCCchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhcceeeeeccccccCCCCCCCCCCCCCceEeccccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999977666 999999999999999999999
Q ss_pred ccCCC-HHHHHHHHHHHHHccc--CCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeecccc
Q 021602 158 ADLQP-VDVVVSHVLKQILSTE--TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMT 234 (310)
Q Consensus 158 ~~~~s-a~elv~~ml~~ll~~~--r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~T 234 (310)
.++.| +++++++|+++|++++ |+++++++||+|+|||||||+||+|||||+++++.++|++++||+|+|+|+|+|||
T Consensus 226 ~~~~~a~~~l~~~l~~~l~~~~d~r~~~~~~~~d~v~~lvN~lG~t~~~El~i~~~~~~~~l~~~~~i~v~~~~~G~~~T 305 (574)
T TIGR02361 226 ISPIPSSDLVVQLMLKKLLDETDKRSYVKFNEGDEVVLLVNNLGGVSNLELGIIADEVVEQLALHYNIIPVRIYSGTFMT 305 (574)
T ss_pred CCCCChHHHHHHHHHHHHhccccccccCCCCCCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeeecccc
Confidence 99999 6669999999999863 67789999999999999999999999999999999999888579999999999999
Q ss_pred ccCCCcceEEEecccH---HHHHhhcCCCCCCCCCC
Q 021602 235 SLDMAGFSISIMKADE---VILKHLDATTKAPHWPV 267 (310)
Q Consensus 235 Sldm~GfSiTLl~ldd---~ll~lldaP~~ap~w~~ 267 (310)
||||+||||||+++|+ ||++|||+||++|+||.
T Consensus 306 sl~m~G~SlTl~~ld~~~~e~~~~ldap~~~~~~~~ 341 (574)
T TIGR02361 306 SLNGPGFSITLLNATEAGKSILDLLDAPTEAPGWPV 341 (574)
T ss_pred cCCCCccEEEEEecCCChHHHHHHhCCCCCCcCCCC
Confidence 9999999999999999 99999999999999975
No 9
>PTZ00375 dihydroxyacetone kinase-like protein; Provisional
Probab=100.00 E-value=1.1e-98 Score=764.50 Aligned_cols=265 Identities=45% Similarity=0.704 Sum_probs=252.3
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCc
Q 021602 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGR 80 (310)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~gR 80 (310)
|||||||||||||||++||++|||++++++|||+|||||||||||||||+|+|+++||+|++|+|+||||++ +++++||
T Consensus 70 ml~aav~G~vFaSPs~~qi~~ai~~v~~~~Gvl~ivkNYtGD~lnF~lA~e~a~~eGi~v~~v~v~DDva~~-~~~~~~R 148 (584)
T PTZ00375 70 WLTAAVCGSVFASPSTKHVLAAIEYVPNGPGCLLIVKNYTGDILNFELAVEQARARGIQVETVLVADDAAFG-TKDIANR 148 (584)
T ss_pred ccceeecccccCCCCHHHHHHHHHHhcCCCCEEEEecccHHHHhhHHHHHHHHHhCCCcEEEEEeCCccCCC-CCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999997 3458899
Q ss_pred ccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCCCCCCCCCCCCeeEEeccccCCCCcccccC
Q 021602 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (310)
Q Consensus 81 RGlAGtvlv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg~~~~f~L~~~emEiGmGIHGEpG~~r~~~ 160 (310)
||+|||||||||+||+|++|+||+||++++++++++++||||+|++||+||....|+|++||||||||||||||++|.++
T Consensus 149 RG~AGtv~v~KiaGAaA~~G~~L~ev~~~a~~~~~~~~tigval~~c~~Pg~~~~~~l~~~~~E~G~GIHgEpG~~~~~~ 228 (584)
T PTZ00375 149 RGIAGTVLLYKILGAAAEKGASLTQLKKLADRISSNMRSIGVSLSSCSLPGNDPSSTVPPGTMEVGLGIHGEKGLARIPF 228 (584)
T ss_pred cchhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcceeeeeccccccCCCCCCCCCCCCceEecccccCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999943489999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccc--C---CCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccc
Q 021602 161 QPVDVVVSHVLKQILSTE--T---NYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTS 235 (310)
Q Consensus 161 ~sa~elv~~ml~~ll~~~--r---~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TS 235 (310)
.++++++++|+++|+++. + +++++++||+|+|||||||+||++||||+++++.++|+++ ||+|+|+++|+||||
T Consensus 229 ~~a~~l~~~l~~~ll~~~~~~~~~~~~~~~~~d~v~vlvN~LG~t~~~El~i~~~~v~~~l~~~-gi~v~~~~vG~~~TS 307 (584)
T PTZ00375 229 QGAKDLVKFLIGILLGKGKKRGGGKTTAIREGAKVALLVNNLGSTTDLEMSILAHHALRQLAQA-GLTVVGVHSGRLMTS 307 (584)
T ss_pred CCHHHHHHHHHHHHHhhhhccccccccCCCCCCeEEEEEcCCCCCcHHHHHHHHHHHHHHHHHC-CCeEEEEeeeccccc
Confidence 999999999999999861 1 1448899999999999999999999999999999999888 999999999999999
Q ss_pred cCCCcceEEEecccH-HHHH--------hhcCCCCCCCCCC
Q 021602 236 LDMAGFSISIMKADE-VILK--------HLDATTKAPHWPV 267 (310)
Q Consensus 236 ldm~GfSiTLl~ldd-~ll~--------lldaP~~ap~w~~ 267 (310)
|||+||||||+++|| +|++ |||+||++|+||.
T Consensus 308 ldm~G~SlTll~l~d~~~~~~~~~p~~~lldapt~apaw~~ 348 (584)
T PTZ00375 308 LEMHGFSLTLLPIEDEDDLQLLDTNQKPLLNFHTPQSSWAT 348 (584)
T ss_pred cCCCccEEEEEecCcHHHHHHhccccHhhhCCCCCCCCCCC
Confidence 999999999999965 5999 8888899999976
No 10
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7e-97 Score=726.50 Aligned_cols=293 Identities=51% Similarity=0.814 Sum_probs=273.8
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCC-CCC
Q 021602 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRG-IAG 79 (310)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~-~~g 79 (310)
||||++||+||||||.+||++|||+|.+.+|+|+|||||||||||||||+||||++|++||+|+|+||||+++.++ ++|
T Consensus 71 mLtaai~G~iFASPstkqI~aairaV~~~~GtLlIVKNYTGD~LhFGLAaErara~G~~ve~v~vgDDvavg~~kg~~vG 150 (582)
T KOG2426|consen 71 MLTAAIAGDIFASPSTKQILAAIRAVEGEAGTLLIVKNYTGDRLHFGLAAERARAAGIKVELVAVGDDVAVGRKKGGKVG 150 (582)
T ss_pred hhhhhhhcccccCCcHHHHHHHHHHhccCCceEEEEeccccceeehhhhHHHHHhcCCceEEEEEccccccCCccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999877 899
Q ss_pred cccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCCCCCCCCCCCCeeEEeccccCCCCccc-c
Q 021602 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAV-A 158 (310)
Q Consensus 80 RRGlAGtvlv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg~~~~f~L~~~emEiGmGIHGEpG~~r-~ 158 (310)
||||||||||||||||+|++|++|+||.++++.+++|+.|||++|+||++||+++.++|+++|||+|||||||||++| .
T Consensus 151 RRGLagTVLvHKIAGAaA~~Gl~Le~va~~ak~v~dn~~Tig~SL~hc~vPG~k~e~eL~~de~ElGmGIHnEpG~~r~~ 230 (582)
T KOG2426|consen 151 RRGLAGTVLVHKIAGAAAAEGLSLEEVAKVAKSVVDNMGTIGVSLDHCSVPGRKPEDELGADEMELGMGIHNEPGVKRIS 230 (582)
T ss_pred cccccceeeeehhhhHHHHccCCHHHHHHHHHHHHHhhhhheeeeeeeccCCCCcccccCccceeecccccCCCCceecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999988 5
Q ss_pred cCCCHHHHHHHHHHHHHccc--CCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeecccccc
Q 021602 159 DLQPVDVVVSHVLKQILSTE--TNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (310)
Q Consensus 159 ~~~sa~elv~~ml~~ll~~~--r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSl 236 (310)
+++|+++||.+||++|++.+ |+|+++.+||+|++|||||||+|.|||.+++..+.++|+.+|||.|+|+|+|+|||||
T Consensus 231 p~ps~d~lVs~mL~~ll~~~~drs~V~~~~~d~VVllVNNLGG~S~lEl~~ia~~v~~~L~~~y~I~p~R~~~G~fmTsL 310 (582)
T KOG2426|consen 231 PIPSIDELVSQMLPQLLDPTKDRSYVKFEEGDEVVLLVNNLGGVSNLELGIIAGKVVEQLEDEYGIGPVRTFAGTFMTSL 310 (582)
T ss_pred CCCCHHHHHHHHHHHhcCCccccccccccCCCeEEEEEcCCCCcchhhhHHHHHHHHHHHHhhcCccceEEEeeeeeeec
Confidence 55669999999999999984 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEecc---------cHHHHHhhcCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCceE
Q 021602 237 DMAGFSISIMKA---------DEVILKHLDATTKAPHWPVGV--DGNRPPAKIPVPMPPSHSMKSDEVS 294 (310)
Q Consensus 237 dm~GfSiTLl~l---------dd~ll~lldaP~~ap~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (310)
||+||||||||. |+.+++|+|+|+++|.||... .++.|+.+ ..+...+-+.....|.
T Consensus 311 ng~GfsITll~atka~~~f~~~~s~l~~lda~~~A~~Wp~~~~~~v~~~~~~-~~s~~~~~~~~~s~vt 378 (582)
T KOG2426|consen 311 NGPGFSITLLNATKATKYFDEDTSLLDLLDAPTNAPGWPVAAPGKVPTPPIS-SSSLEHLESEKKSGVT 378 (582)
T ss_pred cCCcceEEEEeccccccccCCCccHHHhhhCcccCCCCcccCcccCCCCCCC-CcchhhcccccCCCcc
Confidence 999999999999 788999999999999999643 55555554 4455554444444443
No 11
>COG2376 DAK1 Dihydroxyacetone kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-79 Score=586.23 Aligned_cols=255 Identities=45% Similarity=0.721 Sum_probs=248.3
Q ss_pred CcceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCC-CCCC
Q 021602 1 MLTAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPR-GIAG 79 (310)
Q Consensus 1 MLdAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~-~~~g 79 (310)
||+|+++|++|+||+++|||++|+++..++|++++++||+||+|||+||+|+++++|++|+.++|+|||++.++. ..++
T Consensus 67 ml~aa~~g~if~sP~~~~il~ai~~a~~g~ggl~ig~nY~gd~mnf~~A~e~a~~~gi~v~~v~v~ddva~~~~rg~~~~ 146 (323)
T COG2376 67 MLDAALVGEIFTSPSPDQILKAIGAALLGKGGLASGPNYGGDFMNFGMAAEGADAEGIKVLTVVVNDDVAVIQSRGKAEG 146 (323)
T ss_pred HHHHHhcccccCCCCHHHHHHHHHHHhcCCeeEEEecchHHHHHHHHHHHhhhhhcCCceEEEEeecccccccccccccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999998875 4799
Q ss_pred cccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC-CCCCCCCCCCeeEEeccccCCCCcccc
Q 021602 80 RRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVA 158 (310)
Q Consensus 80 RRGlAGtvlv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg-~~~~f~L~~~emEiGmGIHGEpG~~r~ 158 (310)
|||++|++|||||+||+|++|+||+++.+++++++++++|+|+++++|++|. ++ |++++||+|+|+|||||||++|+
T Consensus 147 rrgtagdvlv~ki~gaaa~~g~~l~~~~~~a~~a~~~~~s~Gv~lt~~~vp~~Gr--f~~~~gE~elG~gihGe~g~~~~ 224 (323)
T COG2376 147 RRGTAGDVLVPKIAGAAAERGLSLDEVKAVALKAIDNAASIGVALTPCTVPTKGR--ASLGLGERSLGHGIHGEPGVRRE 224 (323)
T ss_pred CCceeeeehHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHhcCcccccccCc--cccCCCCEeeccccCCCCcchHH
Confidence 9999999999999999999999999999999999999999999999999999 55 99999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCC
Q 021602 159 DLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDM 238 (310)
Q Consensus 159 ~~~sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm 238 (310)
+++++++++++|+++|+++ ++++ |+|+|||||||+||++|||++++.|.++|+++ ||+|+|+++|+|||||||
T Consensus 225 ~l~s~~e~~~el~~~l~~~-----~~~~-~~v~~lvn~lG~tp~~el~~~~~~v~~~l~~~-~i~i~~~~~G~~~Tsl~m 297 (323)
T COG2376 225 ILKSADELAKELVDKLLAE-----KLEQ-DEVAVLVNGLGATPLMELYILYNRVARLLAAK-GITIERTLVGNYMTSLDM 297 (323)
T ss_pred hHHhHHHHHHHHHHHHhcc-----cCCC-CcEEEEecCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEeeecceeccccc
Confidence 9999999999999999985 6677 99999999999999999999999999999999 999999999999999999
Q ss_pred CcceEEEecccHHHHHhhcCCCCCCCC
Q 021602 239 AGFSISIMKADEVILKHLDATTKAPHW 265 (310)
Q Consensus 239 ~GfSiTLl~ldd~ll~lldaP~~ap~w 265 (310)
+||||||+++|+||++|||+||++ .|
T Consensus 298 ~G~sitl~~~d~~~~~~~~~p~~~-~~ 323 (323)
T COG2376 298 AGFSITLLKLDDELLDLLDAPVDT-RW 323 (323)
T ss_pred CCceEEEEeCCHHHHHHhcCcCCC-CC
Confidence 999999999999999999999999 55
No 12
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=91.86 E-value=12 Score=39.13 Aligned_cols=180 Identities=23% Similarity=0.246 Sum_probs=117.1
Q ss_pred ceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhc-CCcEEEEEecccccCCCCCCCCCcc
Q 021602 3 TAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE-GYKVEIVIVGDDCALPPPRGIAGRR 81 (310)
Q Consensus 3 dAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~-Gi~v~~ViV~DDvA~~~~~~~~gRR 81 (310)
|..++|.==.-||+++|++||+.++... |+++=.| =|.=||+|+|... +.+|..|. .+. =-.
T Consensus 336 ~~vi~ggqt~nPS~~dll~ai~~~~a~~-V~iLPNn-----~nii~aA~qa~~~~~~~v~vvp---------T~s--~~q 398 (530)
T TIGR03599 336 DVVIEGGQTMNPSTEDILKAIEKVNAKN-VFVLPNN-----KNIILAAEQAAELADKNVVVIP---------TKT--IVQ 398 (530)
T ss_pred CEEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEecCC-----ccHHHHHHHHHHHhCCcEEEEe---------CCC--HHH
Confidence 3456666434799999999999987665 7766666 3888999998764 55544432 121 123
Q ss_pred cccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeecc--ccccCCCCCCCCCCCCeeEEeccccCCCCccccc
Q 021602 82 GLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALS--VCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVAD 159 (310)
Q Consensus 82 GlAGtvlv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals--~c~~Pg~~~~f~L~~~emEiGmGIHGEpG~~r~~ 159 (310)
|++.. ++=+...++++-++.-..+..+++|.-|... .-++.+ .++.+|+. |||-+.-=+...
T Consensus 399 giaAl--------~~fdp~~~~~~n~~~M~ea~~~v~~g~vt~A~rd~~~~~----~~i~~gd~---igi~~~~i~~~~- 462 (530)
T TIGR03599 399 GLAAL--------LVFDPEASLEDNKEAMEEAIKAVRSGEVTYAVRDTKING----LEIKKGDF---LGIVDGKIIAVG- 462 (530)
T ss_pred HHHHH--------HhhCCCCCHHHHHHHHHHHHhcCeEEEEEEEeccceecC----eeecCCCE---eEecCCeEEEec-
Confidence 33321 2235788999999999999999998777433 222222 23444443 444332212222
Q ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhc-CCeEEEeeee
Q 021602 160 LQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVERVYTG 230 (310)
Q Consensus 160 ~~sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~-gi~v~r~~vG 230 (310)
++..+.+..+++++++ ++.+++=++-|=+.+.. .++.+.++++++| ++.+.-.+-|
T Consensus 463 -~d~~~~~~~ll~~l~~---------~~~elvTi~~G~~~~~~-----~~~~l~~~i~~~~~~veve~~~Gg 519 (530)
T TIGR03599 463 -KDPEDAAKKLLDKLLD---------EDSELITIFYGEDATEE-----EAEELEAFIEEKYPDVEVEIYEGG 519 (530)
T ss_pred -CCHHHHHHHHHHHHhc---------CCCeEEEEEECCCCCHH-----HHHHHHHHHHhhCCCcEEEEEECC
Confidence 3677888889988865 47788888888777665 4577778888888 7888766555
No 13
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=87.86 E-value=3.1 Score=42.94 Aligned_cols=176 Identities=18% Similarity=0.186 Sum_probs=99.4
Q ss_pred CHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchhhHHHHHh
Q 021602 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (310)
Q Consensus 15 s~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~gRRGlAGtvlv~KIaG 94 (310)
+++.|.+||..+.++.|||+++ ----=+||-+||.|+...+ .+-+.. +.| .| . +=|++ .|-
T Consensus 48 ~~~~i~~ai~~~~~~~gv~v~~-DlGSa~~~~e~a~e~~~~~-~~~~v~-~~~---ap----l-----VEg~~----~aa 108 (473)
T PRK11377 48 DAVKVMEAIESVADADHVLVMM-DMGSALLSAETALELLDPE-IAAKVR-LCA---AP----L-----VEGTL----AAT 108 (473)
T ss_pred CHHHHHHHHHhccCCCCEEEEE-ecchHHhHHHHHHHhhccc-ccceEE-Eec---Cc----h-----HhHHH----HHH
Confidence 5689999999999999999998 3333479999999998543 222222 222 11 1 11222 233
Q ss_pred HHHHcCCCHHHHHHHHHHHHhhhc-cceeeccccccCC-CCCCCCCCCCeeEEeccccCCCCcccccCCCHHHHHHHHHH
Q 021602 95 AAAAAGLSLADVAAEAKRASEMVG-TMGVALSVCTLPG-QVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLK 172 (310)
Q Consensus 95 AaAe~G~sL~ev~~~a~~~~~~~~-Tigvals~c~~Pg-~~~~f~L~~~emEiGmGIHGEpG~~r~~~~sa~elv~~ml~ 172 (310)
.+|..|.+|++|.+.++.+...-. ..|... ..|. ..+.-..+.+..+.=+-|.++-|..-+ ||..+++..-+
T Consensus 109 v~a~~g~~l~~v~~~~~~a~~~k~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~n~~GLHAR---PAa~lv~~a~~ 182 (473)
T PRK11377 109 VSAASGADIDKVIFDAMHALEAKREQLGLPS---SDTEISDTCPAYDEEARSLSVVIKNRNGLHVR---PASRLVYTLST 182 (473)
T ss_pred HHhccCCCHHHHHHHHHHHhHHHHHhcCCCC---CCcccCCCCCcccccceEEEEEEcCCCCCcHh---HHHHHHHHHhh
Confidence 467899999999999998765433 334322 1111 111112244666666666677776533 23344443332
Q ss_pred HH----Hc-cc-----CC-----CCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcC
Q 021602 173 QI----LS-TE-----TN-----YVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHG 221 (310)
Q Consensus 173 ~l----l~-~~-----r~-----~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~g 221 (310)
.= +. +. ++ .+..+.||++.+.++|=- |.- ....+.+++++.+|
T Consensus 183 f~s~I~i~~~g~~vdakSi~~lm~Lg~~~Gd~v~i~a~G~D-----e~~-Al~~l~~l~~~~fg 240 (473)
T PRK11377 183 FNADMLLEKNGKCVTPESLNQIALLQVRYNDTLRLIAKGPE-----AEE-ALIAFRQLAEDNFG 240 (473)
T ss_pred CCCeEEEEECCeEEchHhHHHHHhcCCCCCCEEEEEEeCcC-----HHH-HHHHHHHHHHhccC
Confidence 20 00 00 00 255678999999998632 221 22455555555444
No 14
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=86.05 E-value=4.3 Score=34.55 Aligned_cols=79 Identities=27% Similarity=0.312 Sum_probs=54.7
Q ss_pred CHHHHHHHHHhccC-CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchhhHHHHH
Q 021602 15 PVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (310)
Q Consensus 15 s~~qIl~ai~~v~~-~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~gRRGlAGtvlv~KIa 93 (310)
++++|.++|+.+.+ ++|||+++== -|=+||.++|.|+.+.+.. +.|..-| . -++.-=++
T Consensus 44 ~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs~~n~e~a~~~l~~~~~--~~v~g~n-l----------------Plvega~~ 103 (125)
T TIGR02364 44 SPDKIIEAIEKADNEADGVLIFYDL-GSAVMNAEMAVELLEDEDR--DKVHLVD-A----------------PLVEGAFA 103 (125)
T ss_pred hHHHHHHHHHHhcCCCCCEEEEEcC-CCcHhHHHHHHHHhccccc--cEEEEec-h----------------hHHHHHHH
Confidence 57889999999966 8999988844 8889999999999876543 2222211 1 13333333
Q ss_pred hH-HHHcCCCHHHHHHHHHHH
Q 021602 94 GA-AAAAGLSLADVAAEAKRA 113 (310)
Q Consensus 94 GA-aAe~G~sL~ev~~~a~~~ 113 (310)
.| .|..|.+|+||++.++..
T Consensus 104 aa~~~~~g~~l~~v~~~~~~~ 124 (125)
T TIGR02364 104 AAVEAQVGASIEQVLAEALQA 124 (125)
T ss_pred HHHHHcCCCCHHHHHHHHHhc
Confidence 33 345899999999888753
No 15
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=85.09 E-value=2.3 Score=36.41 Aligned_cols=77 Identities=29% Similarity=0.372 Sum_probs=55.9
Q ss_pred CHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchhhHHHHHh
Q 021602 15 PVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAG 94 (310)
Q Consensus 15 s~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~gRRGlAGtvlv~KIaG 94 (310)
+.++|.++|+.+++ .|||+++== -|=.+|-.+|.|+.+.+ .+|+ +.| . | . +=|.+ .|-
T Consensus 44 ~~~~i~~ai~~~~~-dGVlVltDL-Gssp~n~~~a~e~~~~~-~~v~---~~d-a---P---l-----VEGa~----~Aa 101 (124)
T PRK14484 44 SFDQIQEAIEKNES-DGVLIFFDL-GSAEMNAEMAIEMLDGE-KKII---IID-A---P---I-----VEGAF----TAA 101 (124)
T ss_pred hHHHHHHHHHhcCc-CCeEEEEeC-CChHHHHHHHHHhcCCC-CcEE---EEC-C---c---H-----HHHHH----HHH
Confidence 57899999999999 999999855 88899999999998655 3443 333 1 1 1 01111 233
Q ss_pred HHHHcCCCHHHHHHHHHHH
Q 021602 95 AAAAAGLSLADVAAEAKRA 113 (310)
Q Consensus 95 AaAe~G~sL~ev~~~a~~~ 113 (310)
..|..|.+|++|.+.++..
T Consensus 102 v~~~~g~~l~~v~~~~~~~ 120 (124)
T PRK14484 102 VLLSAGASLDEILAELKEL 120 (124)
T ss_pred HHHcCCCCHHHHHHHHHHh
Confidence 4567899999999988864
No 16
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=79.00 E-value=2.6 Score=41.82 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=44.2
Q ss_pred eeecCCccCCCCHHHHHHHHHhccCCCceEEEeecccc----ccccHHHHHHHHHhcCCc
Q 021602 4 AAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTG----DRLNFGLAAEQAKSEGYK 59 (310)
Q Consensus 4 Aav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtG----D~LNFgmA~E~A~~~Gi~ 59 (310)
.+..||+|+|..-.|.-.|++.+....|||+..- ..| |-=+||+++++.+.-|++
T Consensus 252 ec~tgd~l~~~~~~qL~~Al~~I~~eGGvlvYLr-qegr~an~~RdygigaqIL~dLGi~ 310 (339)
T PRK09314 252 IGSDFELLTSDKFSELLKAIEYLKKNGGVLIFLN-TESKENNQVKDYGIGAQILKYLGIK 310 (339)
T ss_pred cCChHHhhCCCcHHHHHHHHHHHHHcCCEEEEEc-CCCCCcccccchhHHHHHHHHCCCC
Confidence 3567999999988899999998764449988663 333 578999999999999986
No 17
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=73.62 E-value=5.9 Score=36.00 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=26.3
Q ss_pred eeecCCccCCCCH---HHHHHHHHhcc-CCCceEEEeec
Q 021602 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTN 38 (310)
Q Consensus 4 Aav~G~VFaSPs~---~qIl~ai~~v~-~~~GvL~iv~N 38 (310)
.+..||||.|... .|+..|++.+. .+.|||+.+.+
T Consensus 53 ~~~~~Dvl~~~~~dc~~~L~~Al~~I~~~G~GVlVyL~~ 91 (197)
T PRK00393 53 ECLTGDALFSLRCDCGFQLEAALERIAEEGRGILLYLRQ 91 (197)
T ss_pred ccCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcC
Confidence 3567899987633 67888999975 57799987743
No 18
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=72.68 E-value=4.4 Score=40.68 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=38.9
Q ss_pred ceeecCCccCCC----CHHHHHHHHHhcc-CCCceEEEeecccc------------------------ccccHHHHHHHH
Q 021602 3 TAAICGDVFASP----PVDSILAGIHAVT-GPMGCLLIVTNYTG------------------------DRLNFGLAAEQA 53 (310)
Q Consensus 3 dAav~G~VFaSP----s~~qIl~ai~~v~-~~~GvL~iv~NYtG------------------------D~LNFgmA~E~A 53 (310)
+.+..||||-|. .-.|...|++.+. .+.|||+...|-.| |--+||+|+++.
T Consensus 255 SecltgDv~gS~~c~d~g~qL~~Al~~I~~eG~GvlvYLr~~~~~~gl~~kl~a~~~~~~~~~~~d~r~~r~ygigAqIL 334 (369)
T PRK12485 255 VIDPLRDLVGAEYAGPANWTLWAALQKVAEEGHGVVVVLANHESSQALLERIPQLTQPPRQYQRSQSRIYSEVGTGAQIL 334 (369)
T ss_pred cccchhhhhcCCCCCccHHHHHHHHHHHHHhCCEEEEEecCCCchhhHHHHHHHHHhHhhCCCcccchhhhhhhHHHHHH
Confidence 356789999884 3457999999876 56699887653322 011567777777
Q ss_pred HhcCCc
Q 021602 54 KSEGYK 59 (310)
Q Consensus 54 ~~~Gi~ 59 (310)
+.-||+
T Consensus 335 r~LGV~ 340 (369)
T PRK12485 335 QDLGVG 340 (369)
T ss_pred HHcCCC
Confidence 777765
No 19
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=72.17 E-value=2.6 Score=37.38 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=37.4
Q ss_pred eeecCCccCC---CCHHHHHHHHHhcc-CCCceEEEeec-------------------------------cccccccHHH
Q 021602 4 AAICGDVFAS---PPVDSILAGIHAVT-GPMGCLLIVTN-------------------------------YTGDRLNFGL 48 (310)
Q Consensus 4 Aav~G~VFaS---Ps~~qIl~ai~~v~-~~~GvL~iv~N-------------------------------YtGD~LNFgm 48 (310)
.+..||+|-| ....|+-.|++.+. .+.|||+.+.+ +..|-=+||+
T Consensus 51 ~~~~~Dvf~~~~~d~~~~L~~Am~~I~~~G~GVlVyL~~~~~g~~l~~kl~~~~~~~~g~~~~~a~~~~~~~~d~R~ygi 130 (169)
T PF00925_consen 51 ECLTGDVFGSLRCDCGWQLDKAMRRIAEEGRGVLVYLRQEGRGIGLLNKLRAYNLQDEGYDTVEANRALGFPEDLRDYGI 130 (169)
T ss_dssp --HHHHTS--SSSSHHHHHHHHHHHHHHHTSEEEEEE--TTTTT-HHHHHHHHHHHTTS--HHHHHHCTT--S----THH
T ss_pred cccHhhhcCCCCCCCcHHHHHHHHHHHHcCCEEEEEEcCCCcchhHHHHHHHHHhhhcCCcchhhhhcccCccccccHHH
Confidence 4567999998 56788888998886 57899999921 1256678888
Q ss_pred HHHHHHhcCCcEEEEEe
Q 021602 49 AAEQAKSEGYKVEIVIV 65 (310)
Q Consensus 49 A~E~A~~~Gi~v~~ViV 65 (310)
+++.++.-|++ +|.+.
T Consensus 131 gaqIL~dLGV~-~~rLL 146 (169)
T PF00925_consen 131 GAQILRDLGVK-KMRLL 146 (169)
T ss_dssp HHHHHHHTT---SEEEE
T ss_pred HHHHHHHcCCC-EEEEC
Confidence 88888888876 44333
No 20
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=71.05 E-value=7.3 Score=35.19 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=25.8
Q ss_pred eeecCCccCCCC---HHHHHHHHHhcc-CCCceEEEee
Q 021602 4 AAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVT 37 (310)
Q Consensus 4 Aav~G~VFaSPs---~~qIl~ai~~v~-~~~GvL~iv~ 37 (310)
.+..||||.|.. ..|+.+|++.+. .+.|||+.+.
T Consensus 50 ~~~~~Dvl~~~~~dc~~~L~~al~~i~~~G~GVlVyL~ 87 (191)
T TIGR00505 50 ECLTGDALHSLRCDCGFQLEAALKQIAEEGRGVLIYLR 87 (191)
T ss_pred ccCHHHHhcCCCCCCCchHHHHHHHHHhcCCEEEEEEC
Confidence 456789998753 367888999875 6779998774
No 21
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=69.98 E-value=8.2 Score=34.84 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=25.6
Q ss_pred eeecCCccCCCCH---HHHHHHHHhcc-CCCceEEEee
Q 021602 4 AAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVT 37 (310)
Q Consensus 4 Aav~G~VFaSPs~---~qIl~ai~~v~-~~~GvL~iv~ 37 (310)
.+..+|+|.+... .|+..|++.+. .+.||++.+.
T Consensus 52 ~~~~~Dvl~~~~~~~~~~L~~Al~~Ia~~g~GVlV~l~ 89 (193)
T cd00641 52 ECLTGDVFGSLRCDCGPQLEEALEEIAEEGGGVLLYLR 89 (193)
T ss_pred cCCHHHHhcCCCCCCcchHHHHHHHHHHhCCEEEEEEC
Confidence 3567899986533 67888999975 5679998874
No 22
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=68.21 E-value=16 Score=34.50 Aligned_cols=195 Identities=14% Similarity=0.131 Sum_probs=103.8
Q ss_pred CCCCHHHHHHHHHh-ccCCC-ceEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchh
Q 021602 12 ASPPVDSILAGIHA-VTGPM-GCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTI 87 (310)
Q Consensus 12 aSPs~~qIl~ai~~-v~~~~-GvL~iv--~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~gRRGlAGtv 87 (310)
+.|++.++.++.+. ...+. -||+|- ..-+|=-=|.-+|+++. .+.+|.. + | -|-.-+|.-
T Consensus 61 S~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~--~~~~i~V--i-D-----------S~~~s~g~g 124 (280)
T PF02645_consen 61 SQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML--PDIKIHV--I-D-----------SKSVSAGQG 124 (280)
T ss_dssp E---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH--TTTEEEE--E-E------------SS-HHHHH
T ss_pred cCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc--CcCEEEE--E-e-----------CCCcchhhh
Confidence 46899999999987 55554 476664 34556555566666665 3445433 2 2 133446666
Q ss_pred hHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeecc------ccccCC----------CCCCCCCCCCeeEEeccccC
Q 021602 88 LVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALS------VCTLPG----------QVTSDRLGPGKMELGLGIHG 151 (310)
Q Consensus 88 lv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals------~c~~Pg----------~~~~f~L~~~emEiGmGIHG 151 (310)
++..-|-.++++|.|++||.+..++..+++.+.=+-=+ +--++. =+|-..+.+|+++.
T Consensus 125 ~lv~~a~~l~~~G~s~~ei~~~l~~~~~~~~~~f~~~~L~~L~kgGRis~~~a~ig~lL~IkPIl~~~~G~i~~------ 198 (280)
T PF02645_consen 125 LLVLEAAKLIEQGKSFEEIVEKLEELRERTRTYFVVDDLKYLRKGGRISKAAAFIGNLLNIKPILSFDDGEIEP------ 198 (280)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHTEEEEEEES-SHHHHHCTSSGHHHHHHHHCTTEEEEEEEETTEEEE------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhceEEEEechHHHHHHCCCcCchhhhhhhhhcCcEEEEEECCEEEE------
Confidence 66667779999999999999999999999887644221 111110 01223334444432
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCC-eEEEeeee
Q 021602 152 EPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGL-AVERVYTG 230 (310)
Q Consensus 152 EpG~~r~~~~sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi-~v~r~~vG 230 (310)
..+..+.+..++.|++.+... .. ...+..+.+...- .. |. +.++.+.|+++++. ++....+|
T Consensus 199 -----~~k~Rg~kka~~~l~~~~~~~----~~-~~~~~~i~i~~~~---~~-e~---a~~l~~~l~~~~~~~~~~~~~~~ 261 (280)
T PF02645_consen 199 -----VGKVRGRKKAIKKLIEIIKEE----IK-DPKNYRIAISHAG---NE-EE---AEELKEELKEEFPNAEIIISPIG 261 (280)
T ss_dssp -----EEEESSHHHHHHHHHHHHHHH----HC-TGCGEEEEEEESS----H-HH---HHHHHHHHHHHSTTEEEEEEE--
T ss_pred -----EeeeccHHHHHHHHHHHhhhh----hh-cCCceeEEEEEcC---CH-HH---HHHHHHHHHHhcCCCcEEEEEEC
Confidence 345566678888888877432 11 2233334444422 22 33 34555566666555 55555566
Q ss_pred ccccc-cCCCcceEEE
Q 021602 231 SFMTS-LDMAGFSISI 245 (310)
Q Consensus 231 ~~~TS-ldm~GfSiTL 245 (310)
.-+++ .+-..|.|..
T Consensus 262 ~~i~~H~Gpg~igi~~ 277 (280)
T PF02645_consen 262 PVIGAHTGPGAIGIAF 277 (280)
T ss_dssp HHHHHHH-TTEEEEEE
T ss_pred cEEEEEECCCeEEEEE
Confidence 55543 2333344443
No 23
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=66.06 E-value=6.8 Score=40.34 Aligned_cols=39 Identities=18% Similarity=0.444 Sum_probs=29.0
Q ss_pred ceeecCCccCCCCH---HHHHHHHHhcc-CCCceEEEeecccc
Q 021602 3 TAAICGDVFASPPV---DSILAGIHAVT-GPMGCLLIVTNYTG 41 (310)
Q Consensus 3 dAav~G~VFaSPs~---~qIl~ai~~v~-~~~GvL~iv~NYtG 41 (310)
+.+..||||-|..- .|+-+|++.+. .+.|||+..-|-.|
T Consensus 290 Sec~tgDvfgs~rCdCg~qL~~Al~~I~~~G~GVlvYLr~qeg 332 (450)
T PLN02831 290 SECLTGDIFGSARCDCGNQLALAMQLIEKAGRGVLVYLRGHEG 332 (450)
T ss_pred ccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEcCCCc
Confidence 35778999998643 68888999975 67799887763444
No 24
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=64.95 E-value=8.7 Score=38.47 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=40.0
Q ss_pred ceeecCCccCCC---CHHHHHHHHHhcc-CCCceEEEeecc-cc---------------------ccccHHHHHHHHHhc
Q 021602 3 TAAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNY-TG---------------------DRLNFGLAAEQAKSE 56 (310)
Q Consensus 3 dAav~G~VFaSP---s~~qIl~ai~~v~-~~~GvL~iv~NY-tG---------------------D~LNFgmA~E~A~~~ 56 (310)
+.+..||||-|- ...|...|++.+. .+.|||+...|- .| |-=+||+|++..+.-
T Consensus 255 S~c~tgDvfgs~~cdcg~qL~~al~~I~~~G~GvlvyL~qegrgigl~~k~~~~~~an~~lg~~~d~R~y~igaqIL~~L 334 (367)
T PRK14019 255 EPLSVLDLLEVGQPTHSWSLDAAMAAIAEAGSGVVVLLNCGDDGEHLLDRFRAEEAAAALKRRPVDYRTYGIGAQILRDL 334 (367)
T ss_pred eccchHhHhcCCCCCcHHHHHHHHHHHHhcCCEEEEEEccCCchhhHHHhhhhhhhhhhhcCCCcccceehHHHHHHHHc
Confidence 346789999874 4678999999975 567998877543 12 344677777777777
Q ss_pred CCc
Q 021602 57 GYK 59 (310)
Q Consensus 57 Gi~ 59 (310)
|++
T Consensus 335 gv~ 337 (367)
T PRK14019 335 GVG 337 (367)
T ss_pred CCC
Confidence 764
No 25
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=64.12 E-value=19 Score=33.82 Aligned_cols=95 Identities=23% Similarity=0.151 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHHHhcc-CCCceEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchhh
Q 021602 12 ASPPVDSILAGIHAVT-GPMGCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTIL 88 (310)
Q Consensus 12 aSPs~~qIl~ai~~v~-~~~GvL~iv--~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~gRRGlAGtvl 88 (310)
+.||+.++.++++... .+.-||+|- ..-+|=-=|+-+|+++.. +++ |.|=| -|-.-+|.-+
T Consensus 60 S~ps~~~~~~~~~~l~~~~~~vi~i~iSs~lSgty~~a~~aa~~~~--~~~---i~ViD-----------S~~~s~~~g~ 123 (275)
T TIGR00762 60 SQPSPGEFLELYEKLLEEGDEVLSIHLSSGLSGTYQSARQAAEMVD--EAK---VTVID-----------SKSASMGLGL 123 (275)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEEcCCchhHHHHHHHHHHhhCC--CCC---EEEEC-----------ChHHHHHHHH
Confidence 3478888999987654 344566654 344554445555555442 233 33333 2445577788
Q ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHhhhcccee
Q 021602 89 VNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGV 122 (310)
Q Consensus 89 v~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigv 122 (310)
+..-|..++++|.+++||.+..++..+++.+.=+
T Consensus 124 ~v~~a~~~~~~G~s~~eI~~~l~~~~~~~~~~f~ 157 (275)
T TIGR00762 124 LVLEAAKLAEEGKSLEEILAKLEELRERTKLYFV 157 (275)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEE
Confidence 8889999999999999999999999999887644
No 26
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=62.68 E-value=15 Score=32.02 Aligned_cols=82 Identities=20% Similarity=0.131 Sum_probs=57.0
Q ss_pred CCCC-eeEEeccccCCCCcccccCCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhh
Q 021602 138 LGPG-KMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNL 216 (310)
Q Consensus 138 L~~~-emEiGmGIHGEpG~~r~~~~sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L 216 (310)
|+++ --=+|+-.+|.. ....+..+.+++++..++.|... .+..++.++=-.+|| +++-++.++|
T Consensus 23 l~~~~~~v~~i~~~~~~-~~~~~~~si~~la~~y~~~I~~~-------~~~gp~~L~G~S~Gg-------~lA~E~A~~L 87 (229)
T PF00975_consen 23 LPDDVIGVYGIEYPGRG-DDEPPPDSIEELASRYAEAIRAR-------QPEGPYVLAGWSFGG-------ILAFEMARQL 87 (229)
T ss_dssp HTTTEEEEEEECSTTSC-TTSHEESSHHHHHHHHHHHHHHH-------TSSSSEEEEEETHHH-------HHHHHHHHHH
T ss_pred CCCCeEEEEEEecCCCC-CCCCCCCCHHHHHHHHHHHhhhh-------CCCCCeeehccCccH-------HHHHHHHHHH
Confidence 3443 333444444443 34466689999999999999763 223389999999997 7888889999
Q ss_pred hhhcCCeEEEee-eeccccc
Q 021602 217 QLEHGLAVERVY-TGSFMTS 235 (310)
Q Consensus 217 ~~~~gi~v~r~~-vG~~~TS 235 (310)
+++ |.+|.+++ +....+.
T Consensus 88 e~~-G~~v~~l~liD~~~p~ 106 (229)
T PF00975_consen 88 EEA-GEEVSRLILIDSPPPS 106 (229)
T ss_dssp HHT-T-SESEEEEESCSSTT
T ss_pred HHh-hhccCceEEecCCCCC
Confidence 999 99998765 5555554
No 27
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=60.89 E-value=24 Score=32.97 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccc
Q 021602 12 ASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDC 69 (310)
Q Consensus 12 aSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDv 69 (310)
...+++++-++++.-...+.|++.--||+|.+.+..--++.+++.|+ .++-|++
T Consensus 138 ~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~----~livDeA 191 (294)
T cd00615 138 GGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGL----PVLVDEA 191 (294)
T ss_pred CCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCC----eEEEECc
Confidence 45688999888876444455555556999999999888888988875 3445555
No 28
>PRK08815 GTP cyclohydrolase; Provisional
Probab=59.69 E-value=8.6 Score=38.68 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=29.1
Q ss_pred ceeecCCccCCC---CHHHHHHHHHhcc-CCCceEEEeecccccc
Q 021602 3 TAAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNYTGDR 43 (310)
Q Consensus 3 dAav~G~VFaSP---s~~qIl~ai~~v~-~~~GvL~iv~NYtGD~ 43 (310)
+.+..||||-|- .-.|.-+|++.+. .+.|||+.+ |-.|-.
T Consensus 223 s~c~tgDvfgs~~cdc~~qL~~Al~~I~~~G~GVlvyL-~qegrg 266 (375)
T PRK08815 223 SSCLTGDLFGSLKCDCGDQLRHGLAKLKELGGGVLLYL-DQEGRG 266 (375)
T ss_pred ccCcHHHHhcCCCCCCHHHHHHHHHHHHhhCCEEEEEE-cCCCcc
Confidence 356789999875 3478888999975 677998876 555433
No 29
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=57.78 E-value=50 Score=32.58 Aligned_cols=126 Identities=13% Similarity=0.191 Sum_probs=85.4
Q ss_pred HHhhhccceeeccccccCC-CCCCCCCCCC----eeEEeccccCCCCcccccCCCHHHHHHHHHHHHHcccCCCCCCCCC
Q 021602 113 ASEMVGTMGVALSVCTLPG-QVTSDRLGPG----KMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRG 187 (310)
Q Consensus 113 ~~~~~~Tigvals~c~~Pg-~~~~f~L~~~----emEiGmGIHGEpG~~r~~~~sa~elv~~ml~~ll~~~r~~l~~~~g 187 (310)
+.+.++..|+-..-+.++| .+.++.|-++ |-|| ++||.. -+.+++ +++++++... +++.
T Consensus 67 ~~~~l~~~gi~~~fv~v~g~TRinvki~~~~~~~~Tei-----n~~Gp~----is~~~~-~~~l~~~~~~------l~~~ 130 (310)
T COG1105 67 FVALLKDEGIPDAFVEVKGDTRINVKILDEEDGEETEI-----NFPGPE----ISEAEL-EQFLEQLKAL------LESD 130 (310)
T ss_pred HHHHHHhcCCCceEEEccCCCeeeEEEEecCCCcEEEe-----cCCCCC----CCHHHH-HHHHHHHHHh------cccC
Confidence 4455677788888888898 6677776544 4554 577743 233344 7777777441 3444
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccc-cccCCCcceEEEeccc-HHHHHhhcCCCCC
Q 021602 188 NRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFM-TSLDMAGFSISIMKAD-EVILKHLDATTKA 262 (310)
Q Consensus 188 d~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~-TSldm~GfSiTLl~ld-d~ll~lldaP~~a 262 (310)
| + |.++ |+.|.-=-.-.+.++.+.++++ |.++.---.|..+ .+|+++ -.|+|-+ +|+..++..|-..
T Consensus 131 d-~-Vvls--GSlP~g~~~d~y~~li~~~~~~-g~~vilD~Sg~~L~~~L~~~---P~lIKPN~~EL~~~~g~~~~~ 199 (310)
T COG1105 131 D-I-VVLS--GSLPPGVPPDAYAELIRILRQQ-GAKVILDTSGEALLAALEAK---PWLIKPNREELEALFGRELTT 199 (310)
T ss_pred C-E-EEEe--CCCCCCCCHHHHHHHHHHHHhc-CCeEEEECChHHHHHHHccC---CcEEecCHHHHHHHhCCCCCC
Confidence 5 3 5555 4555443346788899999998 9999988888666 689988 7888876 6788888777654
No 30
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=56.16 E-value=16 Score=33.45 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=28.3
Q ss_pred eecCCccC--------CCCHHHHHHHHHhcc-CCCceEEEeeccc
Q 021602 5 AICGDVFA--------SPPVDSILAGIHAVT-GPMGCLLIVTNYT 40 (310)
Q Consensus 5 av~G~VFa--------SPs~~qIl~ai~~v~-~~~GvL~iv~NYt 40 (310)
.++||+|- +|...++.+.++... .+..|.+|.+|+-
T Consensus 37 ~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNHD 81 (241)
T PRK05340 37 YILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNRD 81 (241)
T ss_pred EEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 47899994 466778888887775 4478999999995
No 31
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=53.60 E-value=15 Score=37.32 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=28.3
Q ss_pred ceeecCCccCCCC---HHHHHHHHHhcc-CCCceEEEeecccc
Q 021602 3 TAAICGDVFASPP---VDSILAGIHAVT-GPMGCLLIVTNYTG 41 (310)
Q Consensus 3 dAav~G~VFaSPs---~~qIl~ai~~v~-~~~GvL~iv~NYtG 41 (310)
+.+..||||-|-. ..|+-+|++.+. .+.|||+...|-.|
T Consensus 256 s~c~tgDvfgs~~cdc~~qL~~Al~~I~~eG~GvlvyL~~qeg 298 (402)
T PRK09311 256 SECLTGDVFGSRRCDCGPQLDAALAQIAEEGRGVVLYMRGQEG 298 (402)
T ss_pred ccCCHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEEEecCCc
Confidence 3567899998742 478888999875 67799887763333
No 32
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.13 E-value=23 Score=30.81 Aligned_cols=80 Identities=23% Similarity=0.307 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchhhHHHHH
Q 021602 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIA 93 (310)
Q Consensus 14 Ps~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~gRRGlAGtvlv~KIa 93 (310)
-|+++|.+||...+..+++|+.+ ---.-+||-+||.|+.+.+ +.++.+++ ..|--+ |.+ .+
T Consensus 44 Ts~~~I~~aI~~~~~ad~~lif~-DlGSA~mn~e~a~El~d~e-i~~~~~~~----daPlVE---------Ga~----~A 104 (129)
T COG3412 44 TSFEKIMEAIEKANEADHVLVFY-DLGSAKLNAEMALELLDKE-IAIKNILC----DAPLVE---------GAY----AA 104 (129)
T ss_pred cCHHHHHHHHHhccccCceEEEE-ecchhhhhHHHHHHHhcch-HHHHhhhc----ccchhh---------hHH----HH
Confidence 46799999999888888888877 6667799999999998554 55544322 122111 111 23
Q ss_pred hHHHHcCCCHHHHHHHHHH
Q 021602 94 GAAAAAGLSLADVAAEAKR 112 (310)
Q Consensus 94 GAaAe~G~sL~ev~~~a~~ 112 (310)
-+.++.|.|++|+..-..+
T Consensus 105 aa~~~~ga~~~evi~~~~e 123 (129)
T COG3412 105 AALLQGGASIDEVIAEALE 123 (129)
T ss_pred HHHHhcCCCHHHHHHHHHh
Confidence 4556789999888765443
No 33
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=46.97 E-value=42 Score=27.44 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeee
Q 021602 189 RVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (310)
Q Consensus 189 ~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG 230 (310)
-+.+=|...|+.+.-..--+++++.+.|++.+|+.+.|+|+-
T Consensus 58 ~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~ 99 (116)
T PTZ00397 58 CCFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYIE 99 (116)
T ss_pred eEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 345567778998887777899999999999999999999985
No 34
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=46.93 E-value=29 Score=31.53 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=32.3
Q ss_pred eecCCccCC------C--CHHHHHHHHHhccC-CCceEEEeeccccccccHHHHHHHHHhcCCc
Q 021602 5 AICGDVFAS------P--PVDSILAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYK 59 (310)
Q Consensus 5 av~G~VFaS------P--s~~qIl~ai~~v~~-~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~ 59 (310)
.++||+|-. | ...++.+.++.+.. +.+|.+|.+|+-. .+.....+..|+.
T Consensus 35 ii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~-----~~~~~~~~~~gi~ 93 (231)
T TIGR01854 35 YILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDF-----LIGKRFAREAGMT 93 (231)
T ss_pred EEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCch-----hhhHHHHHHCCCE
Confidence 478999962 2 23567777777653 6789999999963 2223344555653
No 35
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.02 E-value=1.1e+02 Score=28.54 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=33.4
Q ss_pred eecCCccCCCC--HHH---HHHHHHhcc-CC-CceEEEeecccc-ccccHHHHHHHHHhcCCcE
Q 021602 5 AICGDVFASPP--VDS---ILAGIHAVT-GP-MGCLLIVTNYTG-DRLNFGLAAEQAKSEGYKV 60 (310)
Q Consensus 5 av~G~VFaSPs--~~q---Il~ai~~v~-~~-~GvL~iv~NYtG-D~LNFgmA~E~A~~~Gi~v 60 (310)
.++||+|=... ..+ +.+.++.+. .+ -.|++|.+|+-. +++++ ..+.++..|+.+
T Consensus 44 li~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~~~~~~--~~~l~~~~~v~i 105 (253)
T TIGR00619 44 LVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGNHDSAQRLSA--AKKLLIELGVFV 105 (253)
T ss_pred EECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCCCChhhccc--chhHHHhCCeEE
Confidence 57899998754 322 234454443 23 689999999963 45554 455666666654
No 36
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=44.36 E-value=25 Score=29.36 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=35.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeec
Q 021602 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGS 231 (310)
Q Consensus 190 v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~ 231 (310)
..+=|..+|+.+.-.---+...+.+.|++++||...|+|+--
T Consensus 59 A~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgIp~dRiYI~f 100 (113)
T PTZ00450 59 AYVRVEAWGEYAPSKPKMMTPRITAAITKECGIPAERIYVFY 100 (113)
T ss_pred EEEEEEEecCcCHHHHHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 355688999998866777889999999999999999999853
No 37
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=44.34 E-value=51 Score=30.89 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=35.3
Q ss_pred eecCCccC--CC-CHHHHHHHHHhccCCCceEEEeecccccc--ccHHHHHHHHHhcCCc
Q 021602 5 AICGDVFA--SP-PVDSILAGIHAVTGPMGCLLIVTNYTGDR--LNFGLAAEQAKSEGYK 59 (310)
Q Consensus 5 av~G~VFa--SP-s~~qIl~ai~~v~~~~GvL~iv~NYtGD~--LNFgmA~E~A~~~Gi~ 59 (310)
.++||++. ++ ..+++.+.++......+|.+|.+|+--.. -+...-.+..+..|+.
T Consensus 85 li~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi~ 144 (271)
T PRK11340 85 LLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGIT 144 (271)
T ss_pred EEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCcE
Confidence 46899986 33 34567677777776678999999995221 1122334556667774
No 38
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=43.44 E-value=44 Score=23.94 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=25.2
Q ss_pred EEeeccccccccHHHHHHHHHhcCCcEEEEEecc
Q 021602 34 LIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGD 67 (310)
Q Consensus 34 ~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~D 67 (310)
+.+-||+| |+..=|.+.+++.|+++...-..+
T Consensus 1 V~vPd~~g--~~~~~a~~~l~~~g~~~~~~~~~~ 32 (63)
T PF03793_consen 1 VTVPDLVG--MTYDEAKSILEAAGLTVNVVEEYS 32 (63)
T ss_dssp EEE-TTTT--SBHHHHHHHHHHTT-EEEEEEEEE
T ss_pred CCCCCcCC--CcHHHHHHHHHHCCCEEEEEEEec
Confidence 35789999 999999999999999887777533
No 39
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=42.61 E-value=28 Score=36.92 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=28.5
Q ss_pred ceeecCCccCCC---CHHHHHHHHHhcc-CCCceEEEeecccc
Q 021602 3 TAAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVTNYTG 41 (310)
Q Consensus 3 dAav~G~VFaSP---s~~qIl~ai~~v~-~~~GvL~iv~NYtG 41 (310)
+.|..||||-|- .-.|.-+|++.+. .|.|||+.. |..|
T Consensus 261 SeClTGDvfgS~rCDCg~QL~~AL~~Ia~eG~GVlVYL-rqEG 302 (555)
T PRK09319 261 SECLTGDAFGSLRCDCRMQLEAALKMIENEGEGVVVYL-RQEG 302 (555)
T ss_pred ccCcHHHHhcCCCCCCHHHHHHHHHHHHhcCCEEEEEe-CCCC
Confidence 457889999876 3478888999976 567998755 5554
No 40
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=42.18 E-value=67 Score=28.19 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=37.4
Q ss_pred eecCCccCCCCHH--HHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCC
Q 021602 5 AICGDVFASPPVD--SILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGY 58 (310)
Q Consensus 5 av~G~VFaSPs~~--qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi 58 (310)
.++||+|...... .+.+.++......++.++.+|+-=..-+...-.+..+..|+
T Consensus 37 l~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~~~~~~~~~~l~~~~v 92 (223)
T cd07385 37 VLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYSGDEENWIEALESAGI 92 (223)
T ss_pred EEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCcccccCchHHHHHHHHHcCC
Confidence 4689999876655 56667777777789999999996544444332455566665
No 41
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=42.01 E-value=3.4e+02 Score=26.44 Aligned_cols=181 Identities=19% Similarity=0.252 Sum_probs=104.7
Q ss_pred ceeecCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhc--CCcEEEEEecccccCCCCCCCCCc
Q 021602 3 TAAICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE--GYKVEIVIVGDDCALPPPRGIAGR 80 (310)
Q Consensus 3 dAav~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~--Gi~v~~ViV~DDvA~~~~~~~~gR 80 (310)
+..+.|.-=-.||++.+++||+.++... |+++-.| -|.-||+++|.+. +-+|..| |++ .=-
T Consensus 118 ~~vi~ggqt~nPS~~dl~~Ai~~~~a~~-VivLPNn-----~ni~~aa~qa~~~~~~~~v~Vi---------pTk--s~~ 180 (313)
T PF13684_consen 118 DVVISGGQTMNPSTEDLLNAIEKVGADE-VIVLPNN-----KNIILAAEQAARLSEDKNVVVI---------PTK--SIP 180 (313)
T ss_pred eEEEeCCCCCCCCHHHHHHHHHhCCCCe-EEEEeCC-----chHHHHHHHHHHHhcCCCEEEE---------ecC--CHH
Confidence 3456665545899999999999986654 6666644 4677888777653 2232222 111 112
Q ss_pred ccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCCCCCCCCCCCCeeEEeccccCCCCcccccC
Q 021602 81 RGLAGTILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADL 160 (310)
Q Consensus 81 RGlAGtvlv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg~~~~f~L~~~emEiGmGIHGEpG~~r~~~ 160 (310)
.|++.. ++-+...++++-.+.-+++..+++|.-+...... +.-..+.+..|+. +||.+.--+...
T Consensus 181 qGlaAl--------~~~dp~~~~~~n~~~M~ea~~~v~~~~It~Avrd--~~~~~~~i~~gd~---igl~~~~i~~~~-- 245 (313)
T PF13684_consen 181 QGLAAL--------LVFDPEADLEENVEAMTEAAARVRTGEITYAVRD--TKINGGEIKKGDY---IGLVDGKIVVVG-- 245 (313)
T ss_pred HHHHHH--------HHhCccCChHHHHHHHHHHHhhCeeeeEEEeeec--ceecCcccccCCE---EEEeCCEEEEEc--
Confidence 333321 1123445888888888888888887776554221 1112233344443 565544443332
Q ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhc-CCeEEEeee
Q 021602 161 QPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEH-GLAVERVYT 229 (310)
Q Consensus 161 ~sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~-gi~v~r~~v 229 (310)
.+..+.+..+++++++ ++.+++-++=|=+ ++.- .+..+.+.|+++| ++.+.-.+-
T Consensus 246 ~~~~~~~~~ll~~l~~---------~~~elvTi~~G~~-~~~~----~a~~l~~~l~~~~p~~eve~~~G 301 (313)
T PF13684_consen 246 KDLEEALKKLLEKLLD---------EDGELVTIYYGED-VSEE----EAEALAEFLEEKYPDVEVEVYDG 301 (313)
T ss_pred CCHHHHHHHHHHHhhc---------cCCeEEEEEecCC-CCHH----HHHHHHHHHHHHhCCeEEEEEEC
Confidence 3477788888888754 4678888887733 3332 4455666666666 666654333
No 42
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=41.79 E-value=1.3e+02 Score=27.47 Aligned_cols=63 Identities=24% Similarity=0.408 Sum_probs=37.2
Q ss_pred CCCCcccccCCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhh-cCCeEEEe
Q 021602 151 GEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLE-HGLAVERV 227 (310)
Q Consensus 151 GEpG~~r~~~~sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~-~gi~v~r~ 227 (310)
+=||.-.....+..++++.+++.|... |=+-+++||+=|| +. -..+.+.+.|..+ .++.+.-.
T Consensus 72 ~fpGTisl~~~t~~~~l~di~~sl~~~---------Gf~~ivivngHgG--N~---~~l~~~~~~l~~~~~~~~v~~~ 135 (237)
T PF02633_consen 72 GFPGTISLSPETLIALLRDILRSLARH---------GFRRIVIVNGHGG--NI---AALEAAARELRQEYPGVKVFVI 135 (237)
T ss_dssp TSTT-BBB-HHHHHHHHHHHHHHHHHH---------T--EEEEEESSTT--HH---HHHHHHHHHHHHHGCC-EEEEE
T ss_pred CCCCeEEeCHHHHHHHHHHHHHHHHHc---------CCCEEEEEECCHh--HH---HHHHHHHHHHHhhCCCcEEEEe
Confidence 357876666666777777777777653 5566999999999 22 2334455555554 47766543
No 43
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=41.41 E-value=61 Score=29.07 Aligned_cols=57 Identities=21% Similarity=0.453 Sum_probs=38.7
Q ss_pred CCCC-CCCCCeEEEEEcC--------------------CCCCh-----HHHHHHHHHHHHHhhhhhcCCeEEEee-eecc
Q 021602 180 NYVP-ITRGNRVVLMING--------------------LGATP-----VMELMIAAGKAVPNLQLEHGLAVERVY-TGSF 232 (310)
Q Consensus 180 ~~l~-~~~gd~v~vlVNn--------------------LG~ts-----~lEl~i~~~~v~~~L~~~~gi~v~r~~-vG~~ 232 (310)
.|++ .++||+=++++|| .||+. .-|..-+++.+...|.++ |+.-+++= +|.|
T Consensus 76 ~flp~i~~GDkRii~~nG~~~~av~R~P~~gd~R~N~~~Gg~~~~~~lt~~e~~i~~~i~~~L~~~-Gl~f~GiDvig~~ 154 (173)
T PF02955_consen 76 PFLPEIKEGDKRIILFNGEPSHAVRRIPAKGDFRSNLAAGGSAEPAELTEREREICEQIGPKLRED-GLLFVGIDVIGDK 154 (173)
T ss_dssp E--GGGGG-EEEEEEETTEE-SEEEEE--SS-S---GGGTSCEEEEE--HHHHHHHHHHHHHHHHT-T--EEEEEEETTE
T ss_pred eccccccCCCEEEEEECCEEhHHeecCCCCCCceeeeccCCceeecCCCHHHHHHHHHHHHHHhhc-CcEEEEEeccccc
Confidence 3555 4679999999997 56654 346667889999999999 98777743 5888
Q ss_pred ccccC
Q 021602 233 MTSLD 237 (310)
Q Consensus 233 ~TSld 237 (310)
+|-.|
T Consensus 155 l~EiN 159 (173)
T PF02955_consen 155 LTEIN 159 (173)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 87544
No 44
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=41.29 E-value=76 Score=29.93 Aligned_cols=106 Identities=21% Similarity=0.167 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCC-cccccchhhHH
Q 021602 12 ASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAG-RRGLAGTILVN 90 (310)
Q Consensus 12 aSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~g-RRGlAGtvlv~ 90 (310)
..|...+|+++++.. +..=++++.+|++ +. .+....-|+++=.+=...|.+-. .+..| |.-+.|.+=..
T Consensus 206 ~~p~~k~i~~~i~~~-g~~~~lH~cG~~~-~~------~~~l~~~~~d~~~~d~~~dl~~~--~~~~g~~~~i~G~id~~ 275 (330)
T cd03465 206 SLPYLKKVFDAIKAL-GGPVIHHNCGDTA-PI------LELMADLGADVFSIDVTVDLAEA--KKKVGDKACLMGNLDPI 275 (330)
T ss_pred hhHHHHHHHHHHHHc-CCceEEEECCCch-hH------HHHHHHhCCCeEeecccCCHHHH--HHHhCCceEEEeCcChH
Confidence 366678888888764 3444666777765 11 33344446554333222344422 22333 67788877555
Q ss_pred HHHhHHHHcCCCHHHHHHHHHHHHhhhcc--ceeec-cccccCCC
Q 021602 91 KIAGAAAAAGLSLADVAAEAKRASEMVGT--MGVAL-SVCTLPGQ 132 (310)
Q Consensus 91 KIaGAaAe~G~sL~ev~~~a~~~~~~~~T--igval-s~c~~Pg~ 132 (310)
..+ ...+-+||.+-++++.+.++. =|.-| +.|.+|-+
T Consensus 276 ~~l-----~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~ 315 (330)
T cd03465 276 DVL-----LNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPD 315 (330)
T ss_pred Hhh-----cCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCC
Confidence 221 234669999999999998865 34444 34777753
No 45
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=40.94 E-value=23 Score=35.85 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=28.0
Q ss_pred ceeecCCccCCCC---HHHHHHHHHhccCCCceEEEeecccccc
Q 021602 3 TAAICGDVFASPP---VDSILAGIHAVTGPMGCLLIVTNYTGDR 43 (310)
Q Consensus 3 dAav~G~VFaSPs---~~qIl~ai~~v~~~~GvL~iv~NYtGD~ 43 (310)
+.+..||||-|-. -.|.-+|++.+....|||+.. |..|--
T Consensus 239 Sec~tgDvfgs~~CdCg~qL~~Al~~Ia~eGGvlvYL-rqegrg 281 (387)
T PRK09318 239 SECVTGDTLSSLRCDCGSQLANFLRMISKEGGILIYL-RQEGRG 281 (387)
T ss_pred ecccHHHHhcCCCCCCcchHHHHHHHHHHcCCEEEEE-CCCCcc
Confidence 4577899998743 378888999976433998654 666533
No 46
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=39.78 E-value=1.1e+02 Score=29.71 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeecccccc
Q 021602 165 VVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (310)
Q Consensus 165 elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSl 236 (310)
+.+.+.++.+..+ ++-+.++|.||.=||+..- =..+++++. .|+++ + ++.+++|.++-|=
T Consensus 83 ~~~~~~l~~~~~~-------~~vk~vvL~inSPGG~v~a-s~~i~~~l~-~l~~~-~--PV~v~v~~~AASG 142 (317)
T COG0616 83 DDIEEILRAARAD-------PSVKAVVLRINSPGGSVVA-SELIARALK-RLRAK-K--PVVVSVGGYAASG 142 (317)
T ss_pred HHHHHHHHHHhcC-------CCCceEEEEEECcCCchhH-HHHHHHHHH-HHhhc-C--CEEEEECCeecch
Confidence 3446677777543 4567899999999998763 334555544 45566 5 8889998777663
No 47
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=38.85 E-value=37 Score=28.46 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=25.7
Q ss_pred ccCCCCHHHHHHHHHhccCCCceEEEeecccc
Q 021602 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTG 41 (310)
Q Consensus 10 VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtG 41 (310)
+...|+.++.++.......+.+.++|+.|||.
T Consensus 81 i~v~~d~~~a~~~~~~~~~~~~~~yil~tYTA 112 (113)
T PF08353_consen 81 IIVEEDLEEALDAFLIKSDPTDKVYILATYTA 112 (113)
T ss_pred eEecCCHHHHHHHHHHhcCCCCcEEEEECCcC
Confidence 55578888888886666777888999999994
No 48
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.20 E-value=3.2e+02 Score=26.25 Aligned_cols=194 Identities=14% Similarity=0.145 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHhccCCC--ceEEEe--eccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccchhhH
Q 021602 14 PPVDSILAGIHAVTGPM--GCLLIV--TNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTILV 89 (310)
Q Consensus 14 Ps~~qIl~ai~~v~~~~--GvL~iv--~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~gRRGlAGtvlv 89 (310)
|++..+.++.+...... .||+|- ..-+| .|.. +..|++..-+.++.+++=..+. .|.-+.
T Consensus 64 Ps~~~~~~~~~~l~~~g~~~vi~i~iSs~LSg---ty~~-a~~a~~~~~~~~v~viDS~~~s------------~~~g~~ 127 (282)
T COG1307 64 PSPGEFEELFEKLLQKGYDEVISIHISSGLSG---TYQS-AQLAAELVEGAKVHVIDSKSVS------------MGLGFL 127 (282)
T ss_pred cCHHHHHHHHHHHHhCCCcEEEEEEcCCCccH---HHHH-HHHHHHhccCceEEEEcCcchh------------hHHHHH
Confidence 77888888888876542 466553 22333 3555 4444444333344444322221 233455
Q ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHhhhccceee--ccccccCCCC--------------CCCCCCCCeeEEeccccCCC
Q 021602 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVA--LSVCTLPGQV--------------TSDRLGPGKMELGLGIHGEP 153 (310)
Q Consensus 90 ~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigva--ls~c~~Pg~~--------------~~f~L~~~emEiGmGIHGEp 153 (310)
.+=+..++++|.|++|+.+..+++.+++.+.=+. |+++.-=|+= |...+.+|+++.
T Consensus 128 v~~a~~l~~~G~s~~ei~~~l~~~~~~t~~~~~v~~L~~L~kgGRIs~~~a~lg~lL~ikPIl~~~~G~~~~-------- 199 (282)
T COG1307 128 VLEAAELAKAGKSFEEILKKLEEIREKTKAYFVVDDLDNLVKGGRISKAAAFLGNLLKIKPILSFEDGELVL-------- 199 (282)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhcEEEEEECchhHHHhCCCcchhHHHHHhhhcceEEEEEeCCEEEE--------
Confidence 5566789999999999999999999998765432 4444333321 223334444432
Q ss_pred CcccccCCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCe--EEEeeee-
Q 021602 154 GAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLA--VERVYTG- 230 (310)
Q Consensus 154 G~~r~~~~sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~--v~r~~vG- 230 (310)
-.+..+.+..++.|++.+.+. ..-..+- .++++.+-+. | ......+.|.++ ++. +.-...|
T Consensus 200 ---~~K~R~~kka~~~l~~~~~~~----~~~~~~~-~~~~~~~~~~----e---~~~~l~~~l~~~-~~~~~~~~~~~~~ 263 (282)
T COG1307 200 ---LGKVRGQKKAIKKLIELLKKE----VKDGAGY-RVAVLHGDAP----E---AAEQLKEKLLNK-FIEKDISISELGP 263 (282)
T ss_pred ---EeecccHHHHHHHHHHHHHHH----hccCCce-EEEEEeCCch----h---HHHHHHHHHHhh-cCCCCceeeccCC
Confidence 356667778888888888764 3212233 3444443221 2 344455555666 444 4444444
Q ss_pred ccccccCCCcceEEEec
Q 021602 231 SFMTSLDMAGFSISIMK 247 (310)
Q Consensus 231 ~~~TSldm~GfSiTLl~ 247 (310)
...|-.+-..++|.+..
T Consensus 264 vi~~H~G~ga~~i~~~~ 280 (282)
T COG1307 264 VIGTHTGPGALGIGVIP 280 (282)
T ss_pred EEEEEECCCeEEEEEEe
Confidence 44456666667766653
No 49
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=37.05 E-value=64 Score=29.36 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEE
Q 021602 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIV 63 (310)
Q Consensus 14 Ps~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~V 63 (310)
.....++++++.-.-...|.++|.|-..- -+.+.|++.||++..+
T Consensus 13 s~~~~ll~~~~~~~~~~~I~~vvs~~~~~-----~~~~~a~~~gIp~~~~ 57 (200)
T PRK05647 13 SNLQAIIDACAAGQLPAEIVAVISDRPDA-----YGLERAEAAGIPTFVL 57 (200)
T ss_pred hhHHHHHHHHHcCCCCcEEEEEEecCccc-----hHHHHHHHcCCCEEEE
Confidence 66777777776544457889999987632 2688999999998654
No 50
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=36.94 E-value=3.7e+02 Score=28.33 Aligned_cols=135 Identities=16% Similarity=0.138 Sum_probs=76.3
Q ss_pred HHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEeccccc---CCCCCCCCCccc---ccch-------hh
Q 021602 22 GIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA---LPPPRGIAGRRG---LAGT-------IL 88 (310)
Q Consensus 22 ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA---~~~~~~~~gRRG---lAGt-------vl 88 (310)
+.+.+.++.|-.++.+||-||+|. ++++...-.-|+- -.+.++||-. .++..+.+-|.- ++|- -.
T Consensus 324 ~~~lvk~P~~FViv~~NlfGDIlS-Dl~A~l~GsLGl~-pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~ 401 (483)
T PLN03065 324 VAYAVKSEGGYVWACKNYDGDVQS-DLLAQGFGSLGLM-TSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIAS 401 (483)
T ss_pred HHHHHhCCCCcEEEeeccchhhhh-HHHHHhcCchhhc-ccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHH
Confidence 346677888999999999999997 5888887777764 4466788853 244444433311 2221 23
Q ss_pred HHHHHhHHHHcCCC--HHHHHHHHHHHHhhhc-cceeeccccccCCCCCCCCCCCCeeEEeccccCCCCcccccCCCHHH
Q 021602 89 VNKIAGAAAAAGLS--LADVAAEAKRASEMVG-TMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDV 165 (310)
Q Consensus 89 v~KIaGAaAe~G~s--L~ev~~~a~~~~~~~~-Tigvals~c~~Pg~~~~f~L~~~emEiGmGIHGEpG~~r~~~~sa~e 165 (310)
+.=.+..+...|.. -+++.+.|+++-+.+. |+.-+ .-+- .+|.=+||. ...+....+-+|
T Consensus 402 IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~G---------~~T~-------DLg~~~~G~-~~~~~~~~~T~e 464 (483)
T PLN03065 402 IFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVESG---------KMTK-------DLAILIHGP-KVSREFYLNTEE 464 (483)
T ss_pred HHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHcC---------Cccc-------ccccccCCC-cccCCCCcCHHH
Confidence 33344455555552 2345555555554432 22211 0011 234445662 123555667788
Q ss_pred HHHHHHHHHH
Q 021602 166 VVSHVLKQIL 175 (310)
Q Consensus 166 lv~~ml~~ll 175 (310)
+.+.+.++|-
T Consensus 465 f~daV~~~L~ 474 (483)
T PLN03065 465 FIDAVAQTLA 474 (483)
T ss_pred HHHHHHHHHH
Confidence 8888888773
No 51
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=34.47 E-value=1.2e+02 Score=28.80 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=39.1
Q ss_pred ccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHH-HHHHHhcCCcEEEEEecccccC
Q 021602 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLA-AEQAKSEGYKVEIVIVGDDCAL 71 (310)
Q Consensus 10 VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA-~E~A~~~Gi~v~~ViV~DDvA~ 71 (310)
+|++.+...+..++......+|..+++.| -.|+.. ...|+..|+++..|-+.+|-..
T Consensus 58 ~~t~~~t~al~~~~~~l~~~~~~vlv~~~-----~~~~~~~~~~a~~~g~~~~~v~~~~~~~~ 115 (363)
T TIGR02326 58 LLQGSGTFAVEAVIGSAVPKDGKLLVVIN-----GAYGARIVQIAEYLGIPHHVVDTGEVEPP 115 (363)
T ss_pred EEcCCCHHHHHHHHHhcCCCCCeEEEEeC-----ChhhHHHHHHHHHcCCceEEEeCCCCCCC
Confidence 47888888888888887665565555443 145443 4567788999999988765443
No 52
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=34.19 E-value=11 Score=36.13 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=36.2
Q ss_pred hhHHHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCC
Q 021602 87 ILVNKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG 131 (310)
Q Consensus 87 vlv~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg 131 (310)
|++.-+||.----|.+++|++.+--++.+..| |||+|+.||+-+
T Consensus 142 ivlEnMAGqGn~vG~tfeelk~ii~~Ikdk~R-igVClDTCH~Fa 185 (281)
T KOG3997|consen 142 IVLENMAGQGNSVGGTFEELKFIIGKIKDKSR-IGVCLDTCHTFA 185 (281)
T ss_pred EEeecccCCCCcccccHHHHHHHHHhhcchhh-heeeHhhhhhhc
Confidence 34455677777778999999999999887765 899999999986
No 53
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=33.08 E-value=78 Score=28.60 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=32.6
Q ss_pred ccCC---CCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEE
Q 021602 10 VFAS---PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEI 62 (310)
Q Consensus 10 VFaS---Ps~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ 62 (310)
||+| .....++++++.=.-..+|.+||.|... .-+.++|++.||++..
T Consensus 5 il~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~-----~~~~~~A~~~gip~~~ 55 (190)
T TIGR00639 5 VLISGNGSNLQAIIDACKEGKIPASVVLVISNKPD-----AYGLERAAQAGIPTFV 55 (190)
T ss_pred EEEcCCChhHHHHHHHHHcCCCCceEEEEEECCcc-----chHHHHHHHcCCCEEE
Confidence 4555 4455666666553345689999999863 2457889999999765
No 54
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=33.05 E-value=57 Score=27.55 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=28.8
Q ss_pred CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEec
Q 021602 29 PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVG 66 (310)
Q Consensus 29 ~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~ 66 (310)
+.+||+|+..+-|.+-.=-++.+.++..|+++.-++++
T Consensus 129 ~~~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 129 QLPVILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 56688888777777655667777888888888887764
No 55
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=32.49 E-value=1e+02 Score=25.49 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=27.9
Q ss_pred HHHHHhccC-CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEec
Q 021602 20 LAGIHAVTG-PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVG 66 (310)
Q Consensus 20 l~ai~~v~~-~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~ 66 (310)
+++++.+.. .-.+++|+ |||. .|-=+++++++.|.+|..+-..
T Consensus 89 ~d~~~~~~~~~~d~ivLv---SgD~-Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 89 IDALELAYKRRIDTIVLV---SGDS-DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred HHHHHHhhhcCCCEEEEE---ECCc-cHHHHHHHHHHcCCEEEEEccC
Confidence 445544443 33566776 5566 7888888888888887765544
No 56
>PRK07198 hypothetical protein; Validated
Probab=32.46 E-value=69 Score=32.91 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=27.9
Q ss_pred ceeecCCccCCCCH---HH----HHHHHHhccC-CCceEEEeecccc
Q 021602 3 TAAICGDVFASPPV---DS----ILAGIHAVTG-PMGCLLIVTNYTG 41 (310)
Q Consensus 3 dAav~G~VFaSPs~---~q----Il~ai~~v~~-~~GvL~iv~NYtG 41 (310)
+.+..||||-|-.- .| |-+|++.+.. +.|||+.+.+ .|
T Consensus 246 SeC~tgDVFGSlrCDCg~qL~~aLe~Amk~IaeeG~GVLVYLrQ-EG 291 (418)
T PRK07198 246 DECNGSDVFGSDICTCRPYLTHGIEECIRGAQRGGVGLIVYNRK-EG 291 (418)
T ss_pred ccccccccccCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEeCC-CC
Confidence 45778999999854 44 5567777765 8899998854 55
No 57
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=32.40 E-value=67 Score=32.51 Aligned_cols=119 Identities=23% Similarity=0.356 Sum_probs=71.5
Q ss_pred HHHHHh-------HHHHcCCCHHHHHHHHHHHHhhhccceeeccccccCCCCCCCCCCCCeeEEeccccCCCCcccccCC
Q 021602 89 VNKIAG-------AAAAAGLSLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQ 161 (310)
Q Consensus 89 v~KIaG-------AaAe~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg~~~~f~L~~~emEiGmGIHGEpG~~r~~~~ 161 (310)
|+||.| .+.++|++-+|+.+- .-.++|| ...+|++++|||-+=||.-|- |
T Consensus 10 v~kiFG~~~~~a~~~~~~G~~k~ei~~~------tg~vvGv---------~~~sl~v~~GeIfViMGLSGS-G------- 66 (386)
T COG4175 10 VYKIFGKNPKRALKLLDQGKSKAEILKK------TGLVVGV---------NDASLDVEEGEIFVIMGLSGS-G------- 66 (386)
T ss_pred ceeecccCHHHHHHHHHcCCcHHHHHHh------hCcEEee---------ccceeeecCCeEEEEEecCCC-C-------
Confidence 466666 356789998888643 2334444 456899999999999999863 2
Q ss_pred CHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcC--CCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCC
Q 021602 162 PVDVVVSHVLKQILSTETNYVPITRGNRVVLMING--LGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMA 239 (310)
Q Consensus 162 sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNn--LG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm~ 239 (310)
+.+.-+++++|.+. ..|. ++|+| .-..+.-||.-+-++-....-++++.=++| |-|+=.
T Consensus 67 --KSTLvR~~NrLiep-------t~G~---ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr-------tVl~Nv 127 (386)
T COG4175 67 --KSTLVRLLNRLIEP-------TRGE---ILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR-------TVLENV 127 (386)
T ss_pred --HHHHHHHHhccCCC-------CCce---EEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch-------hHhhhh
Confidence 34445667777553 3332 33332 334555565555555444444444555555 556666
Q ss_pred cceEEEeccc
Q 021602 240 GFSISIMKAD 249 (310)
Q Consensus 240 GfSiTLl~ld 249 (310)
+|.+.+--++
T Consensus 128 ~fGLev~Gv~ 137 (386)
T COG4175 128 AFGLEVQGVP 137 (386)
T ss_pred hcceeecCCC
Confidence 6666666566
No 58
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=31.74 E-value=1.4e+02 Score=23.91 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=44.8
Q ss_pred HHHHHHHHHH-HHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCC-Cc
Q 021602 163 VDVVVSHVLK-QILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDM-AG 240 (310)
Q Consensus 163 a~elv~~ml~-~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm-~G 240 (310)
+.+.++..++ .|++ ..++.-+++.+-|.+=--.+..|..-+.+.+.+++... .+++.|..+-. +| .-
T Consensus 16 ~~~Av~~Al~spLl~-----~~i~~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~-----a~ii~G~~id~-~l~d~ 84 (95)
T PF12327_consen 16 AEEAVEQALNSPLLD-----VDIKGAKGVLVNITGGPDLSLSEVNEAMEIIREKADPD-----ANIIWGASIDE-ELEDE 84 (95)
T ss_dssp HHHHHHHHHTSTTST-----S-GGG-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTT-----SEEEEEEEE-T-TGTTE
T ss_pred HHHHHHHHHhCcccc-----CChHHhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcC-----ceEEEEEEECC-CCCCe
Confidence 4566666665 4554 34555676666665433577889999999999888755 44567766542 23 34
Q ss_pred ceEEEec
Q 021602 241 FSISIMK 247 (310)
Q Consensus 241 fSiTLl~ 247 (310)
+++|++-
T Consensus 85 i~VtiIa 91 (95)
T PF12327_consen 85 IRVTIIA 91 (95)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 6777763
No 59
>COG1416 Uncharacterized conserved protein [Function unknown]
Probab=30.37 E-value=1.1e+02 Score=26.02 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCCcc
Q 021602 164 DVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMAGF 241 (310)
Q Consensus 164 ~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm~Gf 241 (310)
.+-+..++..|.+- +...+..++.|++||-|-....+-..-...-...|.++ |+++ .-+|+=|++.++..-
T Consensus 13 ~~k~~~~l~Nl~Nl----l~~~p~~~IeVV~~g~ai~~l~~~~~~~~~~~~~L~~~-GV~~--~aC~nSl~a~~i~~d 83 (112)
T COG1416 13 ESKVNMVLGNLTNL----LEDDPSVEIEVVAHGPAIAFLSEKANIAAVRVAELAQQ-GVEF--VACGNSLRAHDIDED 83 (112)
T ss_pred HHHHHHHHHHHHHH----hcCCCCceEEEEEeCchhHHhhhhccchhHHHHHHHHC-CCEE--EEecchHHHcCCCHH
Confidence 45566777777553 56668899999999999888888777776566667777 7765 468888888887754
No 60
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=30.30 E-value=31 Score=30.24 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=34.4
Q ss_pred CCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecc
Q 021602 29 PMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGD 67 (310)
Q Consensus 29 ~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~D 67 (310)
+.-|++|+..+-|..=+.-++.|.++.+|+++.-|+++.
T Consensus 129 ~a~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~ 167 (199)
T PF13500_consen 129 GAPVILVASGRLGTINHTLLTIEALKQRGIRVLGVILNR 167 (199)
T ss_dssp T-EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEE
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 557999999999998889999999999999999999998
No 61
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=30.25 E-value=1.1e+02 Score=29.52 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccC
Q 021602 14 PPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCAL 71 (310)
Q Consensus 14 Ps~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~ 71 (310)
++++++.++++....++--++++.||+|......--++.|++.|+ ++|-|.+-.
T Consensus 105 ~d~~~l~~~i~~~~~~~t~~v~~~~~~G~~~~~~~i~~l~~~~~~----~lI~D~a~a 158 (380)
T TIGR03588 105 IDEDALEKKLAAAKGKLPKAIVPVDFAGKSVDMQAIAALAKKHGL----KIIEDASHA 158 (380)
T ss_pred cCHHHHHHHhhcccCCCceEEEEeCCCCccCCHHHHHHHHHHcCC----EEEEECCCc
Confidence 567777777764422344466678999999988888888888774 466666654
No 62
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=30.01 E-value=36 Score=34.03 Aligned_cols=131 Identities=19% Similarity=0.230 Sum_probs=67.6
Q ss_pred HhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCC--CCCCCCc------ccc------cchhhH
Q 021602 24 HAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPP--PRGIAGR------RGL------AGTILV 89 (310)
Q Consensus 24 ~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~--~~~~~gR------RGl------AGtvlv 89 (310)
.++.+..|-++-+|||.|||..=-+| +---+-|+=...++.-|--.+.. ..+.+.| +|- -..+|.
T Consensus 267 qa~KS~GGfvwAcKNYDGDVqSD~vA-Qg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~hqkG~eTSTN~IASIFA 345 (422)
T KOG1526|consen 267 QAMKSEGGFVWACKNYDGDVQSDIVA-QGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNSIASIFA 345 (422)
T ss_pred HHHhcCCceEEEeecCCCchhhhHHH-hcccchhhheeEEEcCCCCeeeeeccccchhHHHHHHhcCCCccCcchHHHHH
Confidence 44567889999999999999764332 22234566666666656444332 1111211 010 011222
Q ss_pred HHHHhHHHHcCC--CHHHHHHHHHHHHhhh-ccceeeccccccCCCCCCCCCCCCeeEEeccccCCCCcccccCCCHHHH
Q 021602 90 NKIAGAAAAAGL--SLADVAAEAKRASEMV-GTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVV 166 (310)
Q Consensus 90 ~KIaGAaAe~G~--sL~ev~~~a~~~~~~~-~Tigvals~c~~Pg~~~~f~L~~~emEiGmGIHGEpG~~r~~~~sa~el 166 (310)
+ --.++.+|. +-+++..+++.+-..+ .|+-. |.-+- .+-+-||| .+.|....+-.|.
T Consensus 346 W--tRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~---------G~MTK-------DLal~i~g--~~~r~~y~~T~eF 405 (422)
T KOG1526|consen 346 W--TRGLAHRAKLDNNEALAKFANALEKACIETVES---------GKMTK-------DLALCIHG--KVERSDYLNTEEF 405 (422)
T ss_pred H--HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHh---------ccchH-------hHHHHhcC--CccccccccHHHH
Confidence 2 122333332 2345555555544321 11110 11111 23466899 7888888888887
Q ss_pred HHHHHHHHH
Q 021602 167 VSHVLKQIL 175 (310)
Q Consensus 167 v~~ml~~ll 175 (310)
++.+-..|-
T Consensus 406 idav~~~L~ 414 (422)
T KOG1526|consen 406 IDAVASNLK 414 (422)
T ss_pred HHHHHHHHH
Confidence 777666653
No 63
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=29.86 E-value=46 Score=26.01 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=21.6
Q ss_pred ceEEEeeccccccccHHHHHHHHHhcCCc
Q 021602 31 GCLLIVTNYTGDRLNFGLAAEQAKSEGYK 59 (310)
Q Consensus 31 GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~ 59 (310)
-=+++|+.|--|+ |.|+|++-||+
T Consensus 47 ~r~ivVtp~id~~-----a~~~A~~LGIe 70 (70)
T PF07788_consen 47 DRLIVVTPYIDDR-----AKEMAEELGIE 70 (70)
T ss_pred ceEEEEEeecCHH-----HHHHHHHhCCC
Confidence 5689999999999 99999999985
No 64
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=29.58 E-value=1.1e+02 Score=30.21 Aligned_cols=85 Identities=28% Similarity=0.411 Sum_probs=58.6
Q ss_pred eeeccccccCCCCCCCCCCCCeeEEeccccCCCCcccccCCCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCC
Q 021602 121 GVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGAT 200 (310)
Q Consensus 121 gvals~c~~Pg~~~~f~L~~~emEiGmGIHGEpG~~r~~~~sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~t 200 (310)
.+++..|+.|+-.+ ...+..+-||-.+-.|+ .+.-+|+..+|++ . |- -+....|||+|
T Consensus 15 ~~~l~~~s~~~~~~--~~~~~~I~VgsK~~tE~-----------~IL~~m~~~lle~-------~-~~-kv~~~~~lG~t 72 (300)
T COG1732 15 LLLLAACSLPGLGS--ASAAKTIVVGSKIFTEQ-----------YILGNILKQLLEK-------N-GI-KVEDKTGLGGT 72 (300)
T ss_pred HHHHHHhccccccc--cccCCCEEEecCCCcHH-----------HHHHHHHHHHHHh-------c-CC-ceeeccCCCch
Confidence 45677888887222 44667777776555554 6788899898875 1 22 26678899999
Q ss_pred hHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccC
Q 021602 201 PVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLD 237 (310)
Q Consensus 201 s~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSld 237 (310)
+.. ++.|.+- .|.+.--|.|+-.+++.
T Consensus 73 ~v~---------~~Al~~G-~IDiYpEYTGt~~~~~l 99 (300)
T COG1732 73 AVV---------RNALKSG-DIDIYPEYTGTALFSFL 99 (300)
T ss_pred HHH---------HHHHHcC-CCCeEeeecchhhhhhc
Confidence 752 3445566 79999999998776554
No 65
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=29.49 E-value=72 Score=26.93 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=19.7
Q ss_pred eecCCccCCCCHHHHHHHHHhccCCCceEEEeecc
Q 021602 5 AICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNY 39 (310)
Q Consensus 5 av~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NY 39 (310)
.++||+|-.....+.....+.......|.+|-+|+
T Consensus 31 i~~GDi~~~~~~~~~~~~~~~~~~~~~v~~v~GNH 65 (166)
T cd07404 31 VLAGDIGYLTDAPRFAPLLLALKGFEPVIYVPGNH 65 (166)
T ss_pred EECCCCCCCcchHHHHHHHHhhcCCccEEEeCCCc
Confidence 45677776554444433233334556677777776
No 66
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=29.31 E-value=88 Score=31.52 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=35.2
Q ss_pred HHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHH-----HHHhhhhh
Q 021602 168 SHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGK-----AVPNLQLE 219 (310)
Q Consensus 168 ~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~-----v~~~L~~~ 219 (310)
..|+++|+.. +-|.|++|+.|.+|-.+.+|...+... .-++++-.
T Consensus 71 tTLLn~Il~~-------~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~ 120 (391)
T KOG2743|consen 71 TTLLNYILTG-------QHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELR 120 (391)
T ss_pred HHHHHHHHcc-------CCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhc
Confidence 4688888764 569999999999999999999887766 44455444
No 67
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=29.10 E-value=1.5e+02 Score=28.36 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHhccCC--CceEEE---eeccccccccHHHHHHHHHhcCCcEEEEEeccccc
Q 021602 13 SPPVDSILAGIHAVTGP--MGCLLI---VTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA 70 (310)
Q Consensus 13 SPs~~qIl~ai~~v~~~--~GvL~i---v~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA 70 (310)
.++++++-++++..... +-.+++ +.|.||++....--++.|++.|+ ++|-||+-
T Consensus 151 ~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~----~li~De~~ 209 (393)
T TIGR01822 151 NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDA----LVMVDECH 209 (393)
T ss_pred CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCC----EEEEECCc
Confidence 46778888888764322 444555 34899999998777888888764 67788884
No 68
>PRK04946 hypothetical protein; Provisional
Probab=28.85 E-value=1.4e+02 Score=27.07 Aligned_cols=71 Identities=10% Similarity=-0.027 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeecccccc---C
Q 021602 161 QPVDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL---D 237 (310)
Q Consensus 161 ~sa~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSl---d 237 (310)
.+.+|--+++.+.|-+ ....|-+.+.+|-|-|. .++-+.|..||.+. .+|-.|.+.. +
T Consensus 103 ~~~eeA~~~L~~fl~~------a~~~g~r~v~IIHGkG~------gvLk~~V~~wL~q~-------~~V~af~~A~~~~G 163 (181)
T PRK04946 103 LTQLQAKQELGALIAA------CRKEHVFCACVMHGHGK------HILKQQTPLWLAQH-------PDVMAFHQAPKEWG 163 (181)
T ss_pred CCHHHHHHHHHHHHHH------HHHcCCCEEEEEcCCCH------hHHHHHHHHHHcCC-------chhheeeccCcccC
Confidence 3555655555555433 12468889999999994 79999999999875 4677888865 6
Q ss_pred CCcceEEEecccH
Q 021602 238 MAGFSISIMKADE 250 (310)
Q Consensus 238 m~GfSiTLl~ldd 250 (310)
..|..+-+|+.++
T Consensus 164 G~GA~~VlLk~~~ 176 (181)
T PRK04946 164 GDAALLVLIEIEE 176 (181)
T ss_pred CceEEEEEEecCC
Confidence 7788888887654
No 69
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=27.78 E-value=46 Score=27.26 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=33.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeee
Q 021602 190 VVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTG 230 (310)
Q Consensus 190 v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG 230 (310)
..+=|..+|+.+.-+--.++.++.+.|++++||...|+|+=
T Consensus 57 a~v~l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~~Riyi~ 97 (114)
T PF01187_consen 57 AFVELKSIGGLDPEQNKKYSAAITEFLEEELGIPPDRIYIN 97 (114)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHHHHHT--GGGEEEE
T ss_pred EEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCCCcCceEEE
Confidence 45557899999887777999999999999999999999874
No 70
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=26.65 E-value=59 Score=31.99 Aligned_cols=29 Identities=17% Similarity=0.523 Sum_probs=22.8
Q ss_pred HHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHH
Q 021602 169 HVLKQILSTETNYVPITRGNRVVLMINGLGATPVME 204 (310)
Q Consensus 169 ~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lE 204 (310)
.++.+|+++ ..|.|++|+||.+|-.+.-.
T Consensus 16 TlL~~lL~~-------~~g~kiAVIVNEfGEvgID~ 44 (323)
T COG0523 16 TLLNHLLAN-------RDGKKIAVIVNEFGEVGIDG 44 (323)
T ss_pred HHHHHHHhc-------cCCCcEEEEEecCccccccC
Confidence 577788775 34999999999999777653
No 71
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=26.44 E-value=1.9e+02 Score=22.76 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=38.3
Q ss_pred ccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEeccccc
Q 021602 10 VFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCA 70 (310)
Q Consensus 10 VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA 70 (310)
+...+.......-.+.+ +.+.++|+-.++|.-...--++++|++.|++ .|.++++-.
T Consensus 42 ~~~~~~~~~~~~~~~~~--~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~--iv~iT~~~~ 98 (139)
T cd05013 42 VVLLSDPHLQLMSAANL--TPGDVVIAISFSGETKETVEAAEIAKERGAK--VIAITDSAN 98 (139)
T ss_pred eEEecCHHHHHHHHHcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCe--EEEEcCCCC
Confidence 34445555555545444 3456777779999988777788999998865 567776544
No 72
>KOG2948 consensus Predicted metal-binding protein [General function prediction only]
Probab=26.28 E-value=65 Score=31.90 Aligned_cols=53 Identities=25% Similarity=0.468 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHhccC--CCceEEEeeccc--cccccHHHHHHHHHhcCCcEEEEEecccc
Q 021602 14 PPVDSILAGIHAVTG--PMGCLLIVTNYT--GDRLNFGLAAEQAKSEGYKVEIVIVGDDC 69 (310)
Q Consensus 14 Ps~~qIl~ai~~v~~--~~GvL~iv~NYt--GD~LNFgmA~E~A~~~Gi~v~~ViV~DDv 69 (310)
|.-.-+.+||+.... +.|.|+|.++|- -|.| |++=.|+-. + .+++.|+-.|+-
T Consensus 197 Par~~v~~ai~er~~~d~sG~i~v~~~~cPWk~hl-felE~e~~i-e-~~i~fvlf~d~~ 253 (327)
T KOG2948|consen 197 PARELVEEAIAERFDVDPSGIILVLKQFCPWKEHL-FELEKEYKI-E-VKIKFVLFTDES 253 (327)
T ss_pred cHHHHHHHHHHHhcCCCCCceEEEecCCCchHHHH-HHHHHHhCC-C-cceEEEEEeCCC
Confidence 666777889988753 579999999997 5554 666555421 2 136688888887
No 73
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=26.19 E-value=45 Score=31.86 Aligned_cols=58 Identities=17% Similarity=0.295 Sum_probs=46.5
Q ss_pred HHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhc----------CCcEEE--EEecccccCCC
Q 021602 16 VDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSE----------GYKVEI--VIVGDDCALPP 73 (310)
Q Consensus 16 ~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~----------Gi~v~~--ViV~DDvA~~~ 73 (310)
++-|.+||+.+...++..+|+..=.|-.+|=..|.|+|+.+ ||+=+. ..|++.+|.++
T Consensus 64 ~epi~~Al~~~~~~~~~~vi~lsP~G~~f~Q~~a~eLa~~~~lv~iCGrYEGiDeRvi~~~vdeEiSIGD 133 (240)
T COG0336 64 PEPLFDALDSVKAAKKAKVILLSPQGKPFTQARARELAKEEHLVLICGRYEGIDERVIELYVDEEISIGD 133 (240)
T ss_pred cHHHHHHHHHHHhccCCeEEEECCCCCccCHHHHHHHhcCCCEEEEeccccchhHHHHhhccceEEeecc
Confidence 56688899999887788899999999999999999999874 554333 36777888764
No 74
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=25.80 E-value=6e+02 Score=24.40 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=68.0
Q ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHhh-------h------ccceeeccccccCC-CCCCCCCCCCe---eEEeccccC
Q 021602 89 VNKIAGAAAAAGLSLADVAAEAKRASEM-------V------GTMGVALSVCTLPG-QVTSDRLGPGK---MELGLGIHG 151 (310)
Q Consensus 89 v~KIaGAaAe~G~sL~ev~~~a~~~~~~-------~------~Tigvals~c~~Pg-~~~~f~L~~~e---mEiGmGIHG 151 (310)
+.|.+....+-|.++.||-+++++.... . .++.+++-.|..=| -...-.|.+|. +-+|.-++|
T Consensus 24 ~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe~v~HgiP~d~~vlk~GDiv~IDvg~~~dG 103 (255)
T COG0024 24 ALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDG 103 (255)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcceEeehhheeeecCCCCCcccCCCCEEEEEEEEEECC
Confidence 3445555677999999999999998873 2 35555555554333 11345677653 345554444
Q ss_pred CCCc--ccccCCC-----HHHHHHHHHHHHHcccCCCCCCCCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeE
Q 021602 152 EPGA--AVADLQP-----VDVVVSHVLKQILSTETNYVPITRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAV 224 (310)
Q Consensus 152 EpG~--~r~~~~s-----a~elv~~ml~~ll~~~r~~l~~~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v 224 (310)
=-|= ....+.. ++.|++---+.|-.- .-..++|.+ +.-+-+.+.++-++. |++|
T Consensus 104 ~~~Dsa~T~~vg~~~~~~~~~L~~~t~eal~~~---I~~vkpG~~---------------l~~Ig~aIq~~~~~~-G~~v 164 (255)
T COG0024 104 YIGDTAITFVVGEVSDEDAKRLLEATKEALYAG---IEAVKPGAR---------------LGDIGRAIQEYAESR-GFSV 164 (255)
T ss_pred eeeeEEEEEECCCCChHHHHHHHHHHHHHHHHH---HHhccCCCC---------------HHHHHHHHHHHHHHc-CCEE
Confidence 4441 2223331 222332222222110 012344543 445666666666666 9999
Q ss_pred EEeeeec
Q 021602 225 ERVYTGS 231 (310)
Q Consensus 225 ~r~~vG~ 231 (310)
+|-|+|+
T Consensus 165 Vr~~~GH 171 (255)
T COG0024 165 VRNLTGH 171 (255)
T ss_pred eecccCC
Confidence 9999994
No 75
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=25.15 E-value=83 Score=25.58 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=19.4
Q ss_pred eecCCccCCCCHHHHHHHHHhccCCCceEEEeeccc
Q 021602 5 AICGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYT 40 (310)
Q Consensus 5 av~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYt 40 (310)
.++||+|. +.++++.++.. .+++|.+|+-
T Consensus 30 i~~GDi~~---~~~~~~~~~~~----~~~~v~GNHD 58 (156)
T PF12850_consen 30 IILGDIFD---PEEVLELLRDI----PVYVVRGNHD 58 (156)
T ss_dssp EEES-SCS---HHHHHHHHHHH----EEEEE--CCH
T ss_pred EECCCchh---HHHHHHHHhcC----CEEEEeCCcc
Confidence 46788877 47777777766 5888888885
No 76
>PRK06703 flavodoxin; Provisional
Probab=24.82 E-value=4.1e+02 Score=22.15 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=51.9
Q ss_pred HHHHHHHHhhhccceeeccccccCCCCCCCCC-CCCeeEEeccccCCCCcccccCCCHHHHHHHHHHHHHcccCCCCCCC
Q 021602 107 AAEAKRASEMVGTMGVALSVCTLPGQVTSDRL-GPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKQILSTETNYVPIT 185 (310)
Q Consensus 107 ~~~a~~~~~~~~Tigvals~c~~Pg~~~~f~L-~~~emEiGmGIHGEpG~~r~~~~sa~elv~~ml~~ll~~~r~~l~~~ 185 (310)
.++|+++.+.+..-|+..+-+.+....+ .++ ..+-+=||.-.||+- .++ +-++..++.|.. ..++
T Consensus 16 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~-~~l~~~d~viigspt~~~g-----~~p---~~~~~f~~~l~~-----~~l~ 81 (151)
T PRK06703 16 EDIADLIKVSLDAFDHEVVLQEMDGMDA-EELLAYDGIILGSYTWGDG-----DLP---YEAEDFHEDLEN-----IDLS 81 (151)
T ss_pred HHHHHHHHHHHHhcCCceEEEehhhCCH-HHHhcCCcEEEEECCCCCC-----cCc---HHHHHHHHHHhc-----CCCC
Confidence 4566666666665555443333322111 123 345566666555321 111 223444555532 2232
Q ss_pred CCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEE
Q 021602 186 RGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVE 225 (310)
Q Consensus 186 ~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~ 225 (310)
+.+++++ ++|+.+.---.-..+.+.+.|+++ |.++.
T Consensus 82 -~k~~~vf--g~g~~~y~~~~~a~~~l~~~l~~~-G~~~~ 117 (151)
T PRK06703 82 -GKKVAVF--GSGDTAYPLFCEAVTIFEERLVER-GAELV 117 (151)
T ss_pred -CCEEEEE--ccCCCChHHHHHHHHHHHHHHHHC-CCEEc
Confidence 5566555 566666432345667788888888 98654
No 77
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=24.72 E-value=51 Score=28.02 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=19.0
Q ss_pred ccccccHHHHHHHHHhcCCcEE
Q 021602 40 TGDRLNFGLAAEQAKSEGYKVE 61 (310)
Q Consensus 40 tGD~LNFgmA~E~A~~~Gi~v~ 61 (310)
.++++.|.+-.+.+++.|+++.
T Consensus 115 ~~~rl~f~INl~~~~~~gl~is 136 (145)
T PF13689_consen 115 EGNRLRFEINLAAARRAGLRIS 136 (145)
T ss_pred ECCEEEEEECHHHHHHcCCEEC
Confidence 5899999999999999998764
No 78
>PHA02097 hypothetical protein
Probab=24.10 E-value=35 Score=25.50 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.1
Q ss_pred hccCCCceEEEeeccccccccHHH
Q 021602 25 AVTGPMGCLLIVTNYTGDRLNFGL 48 (310)
Q Consensus 25 ~v~~~~GvL~iv~NYtGD~LNFgm 48 (310)
+.+.+.|||.=| |||=|+-||.|
T Consensus 15 amntp~gv~iri-~~tf~~~~f~~ 37 (59)
T PHA02097 15 AMNTPGGVIIRI-AHTFDVSNFKI 37 (59)
T ss_pred EeeCCCcEEEEE-EeEEeeccceE
Confidence 346788998877 99999999976
No 79
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=24.07 E-value=1.2e+02 Score=22.42 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=29.2
Q ss_pred hhhHHHHHhHHHHcCCCHHH-----HHHHHHHHHhhh
Q 021602 86 TILVNKIAGAAAAAGLSLAD-----VAAEAKRASEMV 117 (310)
Q Consensus 86 tvlv~KIaGAaAe~G~sL~e-----v~~~a~~~~~~~ 117 (310)
...+.+++|.++..|.+-++ |..+++.+|++.
T Consensus 13 N~~lf~~a~~~~~~~v~~~~~~~~~v~~~~~~~N~~~ 49 (71)
T PF08708_consen 13 NCTLFRLARRLAYRGVDQEEQFRQEVLSLAQAINSNF 49 (71)
T ss_pred HHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHc
Confidence 57899999999999999999 999999999764
No 80
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=24.04 E-value=1.2e+02 Score=29.30 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=62.8
Q ss_pred cCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCC-CCCcccccchhhH
Q 021602 11 FASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRG-IAGRRGLAGTILV 89 (310)
Q Consensus 11 FaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~-~~gRRGlAGtvlv 89 (310)
|..|...+|+++++....+.-+|++.+|.+.. .|..+.-|++ .+-++.-+.....+. ..+++-+.|.+=-
T Consensus 221 f~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~-------~~~~~~~~~~--~is~d~~~dl~~~k~~~g~~~~i~Gni~p 291 (346)
T PRK00115 221 FVLPYMKRIVAELKREHPDVPVILFGKGAGEL-------LEAMAETGAD--VVGLDWTVDLAEARRRVGDKKALQGNLDP 291 (346)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEcCCcHHH-------HHHHHhcCCC--EEeeCCCCCHHHHHHHcCCCeEEEeCCCh
Confidence 45788899999998742134478888876532 3333444554 344444333322222 3446889998743
Q ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHhhhccceeec-cccccCCC
Q 021602 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTMGVAL-SVCTLPGQ 132 (310)
Q Consensus 90 ~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Tigval-s~c~~Pg~ 132 (310)
. .- .| +-++|.+-++++.+....=|.-| ++|.+|-.
T Consensus 292 ~-----ll-~g-t~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~ 328 (346)
T PRK00115 292 A-----VL-LA-PPEAIEEEVRAILDGGGGPGHIFNLGHGILPE 328 (346)
T ss_pred h-----Hh-cC-CHHHHHHHHHHHHHHhCCCCeeeecCCcCCCC
Confidence 1 11 23 47999999999998874333333 45776643
No 81
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=23.17 E-value=1.5e+02 Score=25.80 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=37.0
Q ss_pred HHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecc
Q 021602 17 DSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGD 67 (310)
Q Consensus 17 ~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~D 67 (310)
+..+++|+... +.|-.++++-=-|=.+-|+||.++.++ |.+|..|++-|
T Consensus 53 ~~y~~~I~~~~-~~gp~~L~G~S~Gg~lA~E~A~~Le~~-G~~v~~l~liD 101 (229)
T PF00975_consen 53 SRYAEAIRARQ-PEGPYVLAGWSFGGILAFEMARQLEEA-GEEVSRLILID 101 (229)
T ss_dssp HHHHHHHHHHT-SSSSEEEEEETHHHHHHHHHHHHHHHT-T-SESEEEEES
T ss_pred HHHHHHhhhhC-CCCCeeehccCccHHHHHHHHHHHHHh-hhccCceEEec
Confidence 44555666644 446888888888999999999776555 99999999888
No 82
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=22.26 E-value=79 Score=30.96 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=33.2
Q ss_pred eecCCcc--CCCCHHHHHHHHHhcc----CCCceEEEeecccc-ccccHHHHH
Q 021602 5 AICGDVF--ASPPVDSILAGIHAVT----GPMGCLLIVTNYTG-DRLNFGLAA 50 (310)
Q Consensus 5 av~G~VF--aSPs~~qIl~ai~~v~----~~~GvL~iv~NYtG-D~LNFgmA~ 50 (310)
.++||+| ..||++.+..+++.+. .+--|++|.+||-. +++++....
T Consensus 45 liAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~~~~~~~~~ 97 (390)
T COG0420 45 LIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPSRLSEASPL 97 (390)
T ss_pred EEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchhccccccch
Confidence 4689999 5688888888776654 35689999999954 455554433
No 83
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=22.23 E-value=2e+02 Score=26.82 Aligned_cols=66 Identities=26% Similarity=0.369 Sum_probs=41.7
Q ss_pred CCCHHHHHHHH-HhccCCCceEEEeeccccccccHHHHHH---HHHhcCCcEEEEEecccccCCCCCCCCCcccccchhh
Q 021602 13 SPPVDSILAGI-HAVTGPMGCLLIVTNYTGDRLNFGLAAE---QAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGTIL 88 (310)
Q Consensus 13 SPs~~qIl~ai-~~v~~~~GvL~iv~NYtGD~LNFgmA~E---~A~~~Gi~v~~ViV~DDvA~~~~~~~~gRRGlAGtvl 88 (310)
.+..+++.+.+ +.+..++=|.+++ +||-+=|+.+.. +++..|++|++|- |
T Consensus 75 ~~~~~~~~~~i~~~~~~g~~Vvvl~---~GDP~~ys~~~~l~~~l~~~~~~veiiP-----------------G------ 128 (263)
T PLN02625 75 SRTQEEIHELLLSFAEAGKTVVRLK---GGDPLVFGRGGEEMDALRKNGIPVTVVP-----------------G------ 128 (263)
T ss_pred ccCHHHHHHHHHHHHHCCCeEEEEc---CCCchhhhhHHHHHHHHHHCCCCEEEEC-----------------C------
Confidence 34556666666 3444555455554 899999998874 4445677777541 1
Q ss_pred HHHHHhHHHHcCCCHH
Q 021602 89 VNKIAGAAAAAGLSLA 104 (310)
Q Consensus 89 v~KIaGAaAe~G~sL~ 104 (310)
+--+..|+|..|.++.
T Consensus 129 ISS~~aaaA~lg~pl~ 144 (263)
T PLN02625 129 ITAAIGAPAELGIPLT 144 (263)
T ss_pred ccHHHHHHHHcCCCcc
Confidence 2235678888888875
No 84
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=21.90 E-value=3e+02 Score=28.03 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=70.6
Q ss_pred cCCccCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCCCcccccch
Q 021602 7 CGDVFASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIAGRRGLAGT 86 (310)
Q Consensus 7 ~G~VFaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~gRRGlAGt 86 (310)
.|+-+.=|.-.++.+|++.. +||=+|-..=.|=.||-.++.|.+++ |++= += +|+..-+.
T Consensus 168 qGEP~lYP~l~~lVqalk~~---~~v~vVSmQTng~~L~~~lv~eLeeA-GLdR--iN----lSv~aLDp---------- 227 (414)
T COG2100 168 QGEPLLYPHLVDLVQALKEH---KGVEVVSMQTNGVLLSKKLVDELEEA-GLDR--IN----LSVDALDP---------- 227 (414)
T ss_pred CCCCccchhHHHHHHHHhcC---CCceEEEEeeCceeccHHHHHHHHHh-CCce--EE----eecccCCH----------
Confidence 47888889888888888776 77777777777899999998888765 4321 11 11111110
Q ss_pred hhHHHHHhHHH-HcCCCHHHHHHHHHHHHhhhccceeeccccccCC
Q 021602 87 ILVNKIAGAAA-AAGLSLADVAAEAKRASEMVGTMGVALSVCTLPG 131 (310)
Q Consensus 87 vlv~KIaGAaA-e~G~sL~ev~~~a~~~~~~~~Tigvals~c~~Pg 131 (310)
|.|=.++ .+-++++.|.++|+.+.+ ..|-|-++|.-+||
T Consensus 228 ----k~Ak~L~G~~dYdv~kvle~aE~i~~--a~idvlIaPv~lPG 267 (414)
T COG2100 228 ----KLAKMLAGRKDYDVKKVLEVAEYIAN--AGIDVLIAPVWLPG 267 (414)
T ss_pred ----HHHHHhcCccccCHHHHHHHHHHHHh--CCCCEEEeeeecCC
Confidence 1111111 246899999999999998 89999999999999
No 85
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=21.73 E-value=2.3e+02 Score=27.24 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=33.0
Q ss_pred CCCCeEEEEEcCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeecccc
Q 021602 185 TRGNRVVLMINGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMT 234 (310)
Q Consensus 185 ~~gd~v~vlVNnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~T 234 (310)
..-+.+.++++.+|+.-.+++ ++.+.+.|+++ |.+....++|..-.
T Consensus 207 ~~a~~~GIiv~tl~~q~~~~~---~~~l~~~l~~~-gkk~y~~~~~~i~~ 252 (307)
T PF01866_consen 207 KDAKTFGIIVGTLGGQGYLEL---IKRLKKLLKKA-GKKSYTLSVGEINP 252 (307)
T ss_dssp TT--EEEEEEE-STTT--HHH---HHHHHHHHHHT-T-EEEEEEESS--G
T ss_pred hcCCEEEEEEecCCCCCCHHH---HHHHHHHHHHc-CCEEEEEEECCCCH
Confidence 456889999999999999985 78888888998 99999999986544
No 86
>smart00740 PASTA PASTA domain.
Probab=21.47 E-value=1.8e+02 Score=19.91 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=25.6
Q ss_pred EEeeccccccccHHHHHHHHHhcCCcEEEEEeccc
Q 021602 34 LIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDD 68 (310)
Q Consensus 34 ~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DD 68 (310)
+.+.||.| +++.-|.+.++..|+++..+...||
T Consensus 5 ~~vp~~~g--~~~~~a~~~l~~~g~~~~~~~~~~~ 37 (66)
T smart00740 5 VEVPDVIG--LSKEEAKKLLKALGLKVEVVEESSE 37 (66)
T ss_pred eeCCCcCC--CCHHHHHHHHHHCCCEEEEEeccCC
Confidence 45788988 7788899999999998877654444
No 87
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=21.30 E-value=1.9e+02 Score=26.15 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=54.9
Q ss_pred ccccccccHHHHH--HHHHhcCCcEEEE-EecccccCCCCCCCCCcccccchhhHHHHHhHHHHcCCCHHHHHHHHHHHH
Q 021602 38 NYTGDRLNFGLAA--EQAKSEGYKVEIV-IVGDDCALPPPRGIAGRRGLAGTILVNKIAGAAAAAGLSLADVAAEAKRAS 114 (310)
Q Consensus 38 NYtGD~LNFgmA~--E~A~~~Gi~v~~V-iV~DDvA~~~~~~~~gRRGlAGtvlv~KIaGAaAe~G~sL~ev~~~a~~~~ 114 (310)
.|..|..+.+-++ ..|+..|+++-.| +|+|...-..+......-.-.|.+-+.|++..+.++=..+-++.++++...
T Consensus 124 ~~ga~aVdMEsaava~va~~~gip~~~ir~ISD~a~~~~~~~~~~~~~~~g~~~~~~ll~~l~~~p~~~~~l~~l~~~~~ 203 (212)
T TIGR03468 124 ATGAAAVDMESGAVAAVAAAAGLPFAVIRVISDPADRALPRAALDALRPDGSTALAALLRGLLRRPLRLPALIRLARDAQ 203 (212)
T ss_pred hcCCcEEeChHHHHHHHHHHcCCCEEEEEEEeecCCCcCchhHHHhcCcccCccHHHHHHHHHhCcchhHHHHHHHHHHH
Confidence 3444555544444 3355678887776 556655433222111222235667789999999999999999999999988
Q ss_pred hhhccce
Q 021602 115 EMVGTMG 121 (310)
Q Consensus 115 ~~~~Tig 121 (310)
...++++
T Consensus 204 ~a~~~L~ 210 (212)
T TIGR03468 204 AALATLR 210 (212)
T ss_pred HHHHHHh
Confidence 8777654
No 88
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=21.24 E-value=1.6e+02 Score=27.84 Aligned_cols=70 Identities=17% Similarity=0.084 Sum_probs=48.2
Q ss_pred CCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeeccccccCCCcceEEEecc-c-HHHHHhhcCCCCCCCCCCCCCCCCC
Q 021602 197 LGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSLDMAGFSISIMKA-D-EVILKHLDATTKAPHWPVGVDGNRP 274 (310)
Q Consensus 197 LG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSldm~GfSiTLl~l-d-d~ll~lldaP~~ap~w~~~~~~~~~ 274 (310)
||||+. .+.+.+.|.++ |+.+.-+.++.|=. ....+..+-.=++ + +++.+++..- ....-.+.+||
T Consensus 8 lgGT~e------gr~la~~L~~~-g~~v~~Svat~~g~-~~~~~~~v~~G~l~~~~~l~~~l~~~----~i~~VIDATHP 75 (248)
T PRK08057 8 LGGTSE------ARALARALAAA-GVDIVLSLAGRTGG-PADLPGPVRVGGFGGAEGLAAYLREE----GIDLVIDATHP 75 (248)
T ss_pred EechHH------HHHHHHHHHhC-CCeEEEEEccCCCC-cccCCceEEECCCCCHHHHHHHHHHC----CCCEEEECCCc
Confidence 578876 46677778788 99888888888766 6666777888899 7 5688888421 22233466666
Q ss_pred CCCC
Q 021602 275 PAKI 278 (310)
Q Consensus 275 ~~~~ 278 (310)
++..
T Consensus 76 fA~~ 79 (248)
T PRK08057 76 YAAQ 79 (248)
T ss_pred cHHH
Confidence 6543
No 89
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=20.72 E-value=1.9e+02 Score=26.77 Aligned_cols=56 Identities=23% Similarity=0.440 Sum_probs=39.8
Q ss_pred eeecCCccCCC---CHHHHHHHHHhcc-CCCceEEEee---------c----------------------cccccccHHH
Q 021602 4 AAICGDVFASP---PVDSILAGIHAVT-GPMGCLLIVT---------N----------------------YTGDRLNFGL 48 (310)
Q Consensus 4 Aav~G~VFaSP---s~~qIl~ai~~v~-~~~GvL~iv~---------N----------------------YtGD~LNFgm 48 (310)
-+..||+|.|= .-.|.-+|++.+. .+.||++..- | |..|--+||+
T Consensus 52 EcltgDvl~s~rcdcg~ql~~al~~i~~~g~GVvvYLrqEGrgigl~~ki~ay~lqd~g~dtv~an~~lg~~~D~R~ygi 131 (193)
T COG0807 52 ECLTGDVLGSLRCDCGEQLEAALRRIAEEGSGVVVYLRQEGRGIGLLNKIRAYALQDKGADTVEANLALGFPADERDYGI 131 (193)
T ss_pred cccccchhcCCCCCcHHHHHHHHHHHhhcCceEEEEeecCCccchHHHHHHHHHhhhcCCChHHHHHhhcCCchHHHHHH
Confidence 35789999885 4556666666666 4578887654 1 2346678999
Q ss_pred HHHHHHhcCCc
Q 021602 49 AAEQAKSEGYK 59 (310)
Q Consensus 49 A~E~A~~~Gi~ 59 (310)
++++.+.-||+
T Consensus 132 gAqIL~dLGI~ 142 (193)
T COG0807 132 GAQILKDLGIK 142 (193)
T ss_pred HHHHHHHcCCc
Confidence 99999988886
No 90
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=20.56 E-value=7.6e+02 Score=26.36 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=55.1
Q ss_pred ccCCCCHHHHHHHHHhccCCCceEEE--e------eccccc-------------------------cccHHHHHHHHHhc
Q 021602 10 VFASPPVDSILAGIHAVTGPMGCLLI--V------TNYTGD-------------------------RLNFGLAAEQAKSE 56 (310)
Q Consensus 10 VFaSPs~~qIl~ai~~v~~~~GvL~i--v------~NYtGD-------------------------~LNFgmA~E~A~~~ 56 (310)
=|.||.+.+.+..++....+.-+..+ . .||.-| .=|...+.+.|+..
T Consensus 51 ~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~ 130 (582)
T TIGR01108 51 RFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKH 130 (582)
T ss_pred ccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHc
Confidence 47889999999988763322212222 2 234333 23566666677777
Q ss_pred CCcEEEEEecccccCCCCCCCCCcccccchhhHHHHHhHHHHcCCC------------HHHHHHHHHHHHhhh
Q 021602 57 GYKVEIVIVGDDCALPPPRGIAGRRGLAGTILVNKIAGAAAAAGLS------------LADVAAEAKRASEMV 117 (310)
Q Consensus 57 Gi~v~~ViV~DDvA~~~~~~~~gRRGlAGtvlv~KIaGAaAe~G~s------------L~ev~~~a~~~~~~~ 117 (310)
|..|+..+...+ .+ + .-.=++.+++-++.+.|.+ -.++.++.+.+.+..
T Consensus 131 G~~v~~~i~~t~--~p--------~--~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~ 191 (582)
T TIGR01108 131 GAHAQGTISYTT--SP--------V--HTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRF 191 (582)
T ss_pred CCEEEEEEEecc--CC--------C--CCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhC
Confidence 766665543333 11 0 1123567777777777654 356777777776554
No 91
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=20.51 E-value=1.7e+02 Score=28.14 Aligned_cols=108 Identities=13% Similarity=0.121 Sum_probs=64.2
Q ss_pred cCCCCHHHHHHHHHhccCCCceEEEeeccccccccHHHHHHHHHhcCCcEEEEEecccccCCCCCCCC-CcccccchhhH
Q 021602 11 FASPPVDSILAGIHAVTGPMGCLLIVTNYTGDRLNFGLAAEQAKSEGYKVEIVIVGDDCALPPPRGIA-GRRGLAGTILV 89 (310)
Q Consensus 11 FaSPs~~qIl~ai~~v~~~~GvL~iv~NYtGD~LNFgmA~E~A~~~Gi~v~~ViV~DDvA~~~~~~~~-gRRGlAGtvlv 89 (310)
|..|...+|+++++...++.-+|++.+|.+. + .|.....|+ +.+-++.-+......+.. ++..+.|.+=-
T Consensus 215 f~~p~~k~i~~~i~~~~~~~~ilh~cg~~~~------~-~~~~~~~~~--~~~s~d~~~dl~e~~~~~~~~~~i~Gni~p 285 (338)
T TIGR01464 215 FVLPYLKKIIEEVKARLPNVPVILFAKGAGH------L-LEELAETGA--DVVGLDWTVDLKEARKRVGPGVAIQGNLDP 285 (338)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCcHH------H-HHHHHhcCC--CEEEeCCCCCHHHHHHHhCCCeeEEeCCCh
Confidence 4578889999999885444457887776541 1 333333454 444444433332222233 46699998843
Q ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHhhhccc-e-eeccccccCCCCC
Q 021602 90 NKIAGAAAAAGLSLADVAAEAKRASEMVGTM-G-VALSVCTLPGQVT 134 (310)
Q Consensus 90 ~KIaGAaAe~G~sL~ev~~~a~~~~~~~~Ti-g-vals~c~~Pg~~~ 134 (310)
. + + .| +-++|.+.++++.+....- | +.-++|.+|-+.|
T Consensus 286 ~-~---l--~g-t~e~i~~~v~~~l~~~~~~~g~Il~~Gc~i~~~tp 325 (338)
T TIGR01464 286 A-V---L--YA-PEEALEEKVEKILEAFGGKSRYIFNLGHGILPDTP 325 (338)
T ss_pred H-H---h--cC-CHHHHHHHHHHHHHHhccCCCceecCCCcCCCCcC
Confidence 2 1 2 34 6799999999999887531 1 3334577775433
No 92
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=20.37 E-value=73 Score=24.71 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHhccCCCceE
Q 021602 14 PPVDSILAGIHAVTGPMGCL 33 (310)
Q Consensus 14 Ps~~qIl~ai~~v~~~~GvL 33 (310)
-|++||++|.|.+..+|+.+
T Consensus 3 ~s~eqv~~aFr~lA~~KpyV 22 (69)
T PF08726_consen 3 DSAEQVEEAFRALAGGKPYV 22 (69)
T ss_dssp STCHHHHHHHHHHCTSSSCE
T ss_pred CCHHHHHHHHHHHHcCCCcc
Confidence 37899999999999998765
No 93
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=20.14 E-value=5.4e+02 Score=23.64 Aligned_cols=74 Identities=9% Similarity=0.091 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHH-cccCCCCCCCCCCeEEEEE----cCCCCChHHHHHHHHHHHHHhhhhhcCCeEEEeeeecccccc
Q 021602 162 PVDVVVSHVLKQIL-STETNYVPITRGNRVVLMI----NGLGATPVMELMIAAGKAVPNLQLEHGLAVERVYTGSFMTSL 236 (310)
Q Consensus 162 sa~elv~~ml~~ll-~~~r~~l~~~~gd~v~vlV----NnLG~ts~lEl~i~~~~v~~~L~~~~gi~v~r~~vG~~~TSl 236 (310)
|+ +-+..-+++|. +. +..++|++|+ ||=|+.++.| +...|.+++||+|+-+.+|..
T Consensus 93 Ta-dAi~~av~rl~~~~-------~a~~kvvILLTDG~n~~~~i~P~~-------aAa~lA~~~gV~iytIgiG~~---- 153 (191)
T cd01455 93 TV-EATEFAIKELAAKE-------DFDEAIVIVLSDANLERYGIQPKK-------LADALAREPNVNAFVIFIGSL---- 153 (191)
T ss_pred HH-HHHHHHHHHHHhcC-------cCCCcEEEEEeCCCcCCCCCChHH-------HHHHHHHhCCCEEEEEEecCC----
Q ss_pred CCCcceEEEecccHHHHHhhcCCCCCCCCC
Q 021602 237 DMAGFSISIMKADEVILKHLDATTKAPHWP 266 (310)
Q Consensus 237 dm~GfSiTLl~ldd~ll~lldaP~~ap~w~ 266 (310)
|++.++.+-.-|.-.+|+
T Consensus 154 ------------d~~~l~~iA~~tgG~~F~ 171 (191)
T cd01455 154 ------------SDEADQLQRELPAGKAFV 171 (191)
T ss_pred ------------CHHHHHHHHhCCCCcEEE
No 94
>PF11195 DUF2829: Protein of unknown function (DUF2829) ; InterPro: IPR021361 This entry is represented by Bacteriophage 16-3, p046. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.02 E-value=90 Score=24.23 Aligned_cols=16 Identities=56% Similarity=0.738 Sum_probs=11.9
Q ss_pred ccHHHHHHHHHhcCCcE
Q 021602 44 LNFGLAAEQAKSEGYKV 60 (310)
Q Consensus 44 LNFgmA~E~A~~~Gi~v 60 (310)
||||-|.+ |-.+|.+|
T Consensus 1 M~F~eAl~-alK~Gkkv 16 (75)
T PF11195_consen 1 MNFGEALE-ALKQGKKV 16 (75)
T ss_pred CCHHHHHH-HHHcCCCE
Confidence 89999999 55666554
Done!