Query 021606
Match_columns 310
No_of_seqs 274 out of 1377
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 06:36:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.8 2.2E-20 7.7E-25 139.2 6.7 58 178-236 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.2 5.8E-12 2E-16 93.6 3.2 41 270-310 2-43 (63)
3 3igm_B PF14_0633 protein; AP2 96.3 0.0025 8.6E-08 48.7 3.2 29 174-202 3-31 (77)
4 1u3e_M HNH homing endonuclease 90.6 0.025 8.7E-07 48.5 -1.8 87 216-310 55-145 (174)
5 1u3e_M HNH homing endonuclease 89.8 0.007 2.4E-07 52.0 -6.0 37 179-217 109-145 (174)
6 3igm_B PF14_0633 protein; AP2 65.5 6.1 0.00021 30.0 3.7 27 267-295 4-31 (77)
7 2z8u_A Tata-box-binding protei 64.6 31 0.0011 30.0 8.7 126 176-309 44-174 (188)
8 3eik_A Tata-box-binding protei 61.3 17 0.0006 32.5 6.6 124 176-310 74-205 (218)
9 1ais_A TBP, protein (tata-bind 54.8 30 0.001 29.8 6.9 126 176-309 40-170 (182)
10 1mp9_A Tata-binding protein; t 49.6 47 0.0016 29.1 7.3 122 176-309 44-174 (198)
11 1z1b_A Integrase; protein-DNA 49.6 17 0.00057 32.5 4.6 41 181-224 15-55 (356)
12 3jtz_A Integrase; four strande 37.6 79 0.0027 23.8 6.1 36 189-224 36-75 (88)
13 3ju0_A Phage integrase; four s 22.3 1.7E+02 0.0057 22.9 5.7 36 189-224 36-75 (108)
14 2ftc_I Mitochondrial ribosomal 21.4 1.2E+02 0.004 24.4 4.7 38 189-226 78-115 (118)
15 1uta_A FTSN, MSGA, cell divisi 20.9 81 0.0028 22.7 3.4 22 201-222 47-68 (81)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.81 E-value=2.2e-20 Score=139.19 Aligned_cols=58 Identities=47% Similarity=0.712 Sum_probs=54.0
Q ss_pred CeEeeeeecCCCcEEEEEEe---CCeEeeecCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 021606 178 QYRGVTFYRRTSRWESHIWD---CGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVT 236 (310)
Q Consensus 178 ~yrGV~~~~~~gkW~A~I~~---~gK~~~LG~F~T~EeAArAyD~Aa~k~~G~~a~~NFp~s 236 (310)
+|+||+++ ++|||+|+|++ +|+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~r-~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeC-CCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 69999974 68999999999 478999999999999999999999999999999999964
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.20 E-value=5.8e-12 Score=93.60 Aligned_cols=41 Identities=29% Similarity=0.532 Sum_probs=37.0
Q ss_pred ccccceeccCCeeeEEEceec-CCeEEEecCCCCHHHHhhhC
Q 021606 270 KYRGVTLHKCGRWEARMGQLL-GKKYVYLGLFDNEAEAARSL 310 (310)
Q Consensus 270 kYrGV~~~k~gKW~ArIg~~~-gkk~~~LG~F~teeEAArAY 310 (310)
+|+||++++.|||+|+|+.+. .+++++||+|+|+||||+||
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~Ay 43 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAY 43 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHH
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHH
Confidence 699999988999999997554 36899999999999999998
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=96.29 E-value=0.0025 Score=48.65 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=25.7
Q ss_pred CCCCCeEeeeeecCCCcEEEEEEeCCeEe
Q 021606 174 SRSSQYRGVTFYRRTSRWESHIWDCGKQV 202 (310)
Q Consensus 174 ~~tS~yrGV~~~~~~gkW~A~I~~~gK~~ 202 (310)
...|+|.||+|+++.+.|.|+-..+|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence 46899999999999999999999998864
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=90.58 E-value=0.025 Score=48.47 Aligned_cols=87 Identities=8% Similarity=-0.002 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCCCC---CCCC-CCchhHHHHhhhccCHHHHHHHHhhccCCcccCCCccccceeccCCeeeEEEceecC
Q 021606 216 AYDRAAIKFRGVDAD---LNFG-VTDYEEDMKQMKHLSKEEFVLILRRQSNGFARGSSKYRGVTLHKCGRWEARMGQLLG 291 (310)
Q Consensus 216 AyD~Aa~k~~G~~a~---~NFp-~s~y~~eL~qLr~LSKEE~V~~LRr~s~g~sR~sSkYrGV~~~k~gKW~ArIg~~~g 291 (310)
++...+..|.|.... .++- -......+..|+-++..|.......... ...++||.+.+.++|.+.| ...
T Consensus 55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~-----~~~~~g~~~~~~~k~~~vi--~~~ 127 (174)
T 1u3e_M 55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT-----LNVSKAQQIAKIKNQKPII--VIS 127 (174)
T ss_dssp HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC-----CCCHHHHHHHHHHTCCCEE--EEC
T ss_pred eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc-----ccceeeeeeccCCCCceEE--EEc
Confidence 566666777774321 1111 1112234788899999888776554321 1225678763356799998 344
Q ss_pred CeEEEecCCCCHHHHhhhC
Q 021606 292 KKYVYLGLFDNEAEAARSL 310 (310)
Q Consensus 292 kk~~~LG~F~teeEAArAY 310 (310)
+..+||.|.|.+|||++|
T Consensus 128 -~~~~~~~f~s~~eAa~~~ 145 (174)
T 1u3e_M 128 -PDGIEKEYPSTKCACEEL 145 (174)
T ss_dssp -TTSCEEEESCHHHHHHHH
T ss_pred -CCceEEeeCCHHHHHHHH
Confidence 556799999999999974
No 5
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=89.82 E-value=0.007 Score=52.04 Aligned_cols=37 Identities=5% Similarity=-0.005 Sum_probs=32.3
Q ss_pred eEeeeeecCCCcEEEEEEeCCeEeeecCCCCHHHHHHHH
Q 021606 179 YRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAY 217 (310)
Q Consensus 179 yrGV~~~~~~gkW~A~I~~~gK~~~LG~F~T~EeAArAy 217 (310)
++||.+ ++.++|.+.|..+ +.++||.|.|.+|||++|
T Consensus 109 ~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~ 145 (174)
T 1u3e_M 109 SKAQQI-AKIKNQKPIIVIS-PDGIEKEYPSTKCACEEL 145 (174)
T ss_dssp HHHHHH-HHHHTCCCEEEEC-TTSCEEEESCHHHHHHHH
T ss_pred eeeeee-ccCCCCceEEEEc-CCceEEeeCCHHHHHHHH
Confidence 578887 6778899999988 778899999999999986
No 6
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=65.50 E-value=6.1 Score=30.02 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=21.7
Q ss_pred CCCccccceecc-CCeeeEEEceecCCeEE
Q 021606 267 GSSKYRGVTLHK-CGRWEARMGQLLGKKYV 295 (310)
Q Consensus 267 ~sSkYrGV~~~k-~gKW~ArIg~~~gkk~~ 295 (310)
.+|+|.||+|.+ .+.|.|.- ..++++.
T Consensus 4 ~~Sg~pGVsw~kR~~~WlA~W--~e~g~rr 31 (77)
T 3igm_B 4 MSSGYPGVSWNKRMCAWLAFF--YDGASRR 31 (77)
T ss_dssp CCSSSTTEEEETTTTEEEEEE--EETTEEE
T ss_pred CCCCCCcEEeecCCceEEEEE--ecCCeEe
Confidence 478999999987 78999999 5556643
No 7
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=64.59 E-value=31 Score=30.02 Aligned_cols=126 Identities=15% Similarity=0.232 Sum_probs=72.5
Q ss_pred CCCeEeeeeecCCCcEEEEEEeCCeEeeecCCCCHHHHHHHHHHHHHHHc--CCC--CCCCCCCCchhHHHHhhhccCHH
Q 021606 176 SSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFR--GVD--ADLNFGVTDYEEDMKQMKHLSKE 251 (310)
Q Consensus 176 tS~yrGV~~~~~~gkW~A~I~~~gK~~~LG~F~T~EeAArAyD~Aa~k~~--G~~--a~~NFp~s~y~~eL~qLr~LSKE 251 (310)
..+|-||.++-+.-+=.+-|+..||-+.-|.. ++++|..|..+.+..+. |.. ...+|....--....---.+..+
T Consensus 44 P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAk-S~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~ 122 (188)
T 2z8u_A 44 PEQFPGLVCRLSVPKVALLIFRSGKVNCTGAK-SKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLD 122 (188)
T ss_dssp -----CEEEEETTTTEEEEECTTSEEEEEEES-SHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHH
T ss_pred CCCcccEEEEcCCCcEEEEEeCCCeEEEecCC-CHHHHHHHHHHHHHHHHhcCCCccccCceEEEEEEEEEecCCccCHH
Confidence 44689999888888999999999999888864 56778877777665553 321 11222110000000001224445
Q ss_pred HHHHHHhhccCCcccCCCccccceec-cCCeeeEEEceecCCeEEEecCCCCHHHHhhh
Q 021606 252 EFVLILRRQSNGFARGSSKYRGVTLH-KCGRWEARMGQLLGKKYVYLGLFDNEAEAARS 309 (310)
Q Consensus 252 E~V~~LRr~s~g~sR~sSkYrGV~~~-k~gKW~ArIg~~~gkk~~~LG~F~teeEAArA 309 (310)
.+...++.. .=.-..|-|+.++ ..-|=.+-| |..||-+..|. .+++|+..|
T Consensus 123 ~la~~~~~~----eYePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A 174 (188)
T 2z8u_A 123 DIALMVEGT----EYEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKRA 174 (188)
T ss_dssp HHHHHSTTE----EECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHHH
T ss_pred HHHhhCcCc----EECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHH
Confidence 554443321 1234588998764 355677777 88888777775 566777665
No 8
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=61.35 E-value=17 Score=32.51 Aligned_cols=124 Identities=15% Similarity=0.225 Sum_probs=80.2
Q ss_pred CCCeEeeeeecCCCcEEEEEEeCCeEeeecCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCchhHHHHhh-------hcc
Q 021606 176 SSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVTDYEEDMKQM-------KHL 248 (310)
Q Consensus 176 tS~yrGV~~~~~~gkW~A~I~~~gK~~~LG~F~T~EeAArAyD~Aa~k~~G~~a~~NFp~s~y~~eL~qL-------r~L 248 (310)
..+|-||.++-+.-+-.+-|+..||-+..|. .++++|..|.++.+..+........|+ ++. +..+ -.+
T Consensus 74 Pe~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~--~fk--IqNIvas~dl~f~I 148 (218)
T 3eik_A 74 PKRFAAVIMRIREPKTTALIFASGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFD--DFK--IQNIVSSCDIKFSI 148 (218)
T ss_dssp TTTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCE--EEE--EEEEEEEEECSSCB
T ss_pred CccCceEEEEecCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccc--cce--EEEEEEEEECCCcC
Confidence 3468899888888999999999999998886 578999999998887775322222331 111 1111 123
Q ss_pred CHHHHHHHHhhccCCcccCCCccccceecc-CCeeeEEEceecCCeEEEecCCCCHHHHhhhC
Q 021606 249 SKEEFVLILRRQSNGFARGSSKYRGVTLHK-CGRWEARMGQLLGKKYVYLGLFDNEAEAARSL 310 (310)
Q Consensus 249 SKEE~V~~LRr~s~g~sR~sSkYrGV~~~k-~gKW~ArIg~~~gkk~~~LG~F~teeEAArAY 310 (310)
..+.+....+..+ .=.-..|-|+.++- .-|=...| |..||-+..|. .+++|+..|+
T Consensus 149 ~Le~la~~~~~~~---~YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~ 205 (218)
T 3eik_A 149 RLEGLAYAHSNYC---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAF 205 (218)
T ss_dssp CHHHHHHHSTTTE---ECCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHH
T ss_pred cHHHHHHhccCCc---EECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHH
Confidence 3444443332211 11235788987643 45566777 88888777776 7788887764
No 9
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=54.76 E-value=30 Score=29.85 Aligned_cols=126 Identities=18% Similarity=0.221 Sum_probs=75.2
Q ss_pred CCCeEeeeeecCCCcEEEEEEeCCeEeeecCCCCHHHHHHHHHHHHHHHc--CCC-C-CCCCCCCchhHHHHhhhccCHH
Q 021606 176 SSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFR--GVD-A-DLNFGVTDYEEDMKQMKHLSKE 251 (310)
Q Consensus 176 tS~yrGV~~~~~~gkW~A~I~~~gK~~~LG~F~T~EeAArAyD~Aa~k~~--G~~-a-~~NFp~s~y~~eL~qLr~LSKE 251 (310)
..+|-||.++-+.-+-.+-|+..||-+.-|. .++++|..|..+.+..+. |.. . ..+|....--....---.+..+
T Consensus 40 P~~fpgli~Rl~~P~~t~lIF~SGKiv~TGa-kS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~ 118 (182)
T 1ais_A 40 PEEFPGIICHLDDPKVALLIFSSGKLVVTGA-KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLD 118 (182)
T ss_dssp TTTCSSEEEECSSSCCEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHH
T ss_pred CCccccEEEEcCCCcEEEEEeCCCeEEEecC-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHH
Confidence 4468899887777788999999999887764 677888888888776664 321 1 1122100000000000124445
Q ss_pred HHHHHHhhccCCcccCCCccccceecc-CCeeeEEEceecCCeEEEecCCCCHHHHhhh
Q 021606 252 EFVLILRRQSNGFARGSSKYRGVTLHK-CGRWEARMGQLLGKKYVYLGLFDNEAEAARS 309 (310)
Q Consensus 252 E~V~~LRr~s~g~sR~sSkYrGV~~~k-~gKW~ArIg~~~gkk~~~LG~F~teeEAArA 309 (310)
.+...++.- .=.-..|-|+.++- .-+=.+.| |..||-+..|. .+++|+..|
T Consensus 119 ~la~~~~~~----~YePe~fpgli~R~~~pk~~~lI--F~SGKiviTGa-ks~~~~~~a 170 (182)
T 1ais_A 119 VVALTLPNC----EYEPEQFPGVIYRVKEPKSVILL--FSSGKIVCSGA-KSEADAWEA 170 (182)
T ss_dssp HHHHHSTTE----ECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHH
T ss_pred HHHhhCCCC----EECCccCceEEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHH
Confidence 554443321 12345788987643 45667777 88888777775 566666655
No 10
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=49.63 E-value=47 Score=29.08 Aligned_cols=122 Identities=16% Similarity=0.250 Sum_probs=75.2
Q ss_pred CCCeEeeeeecCCCcEEEEEEeCCeEeeecCCCCHHHHHHHHHHHHHHHcCCCCC-CCCCCCchhHHHHhh-------hc
Q 021606 176 SSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDAD-LNFGVTDYEEDMKQM-------KH 247 (310)
Q Consensus 176 tS~yrGV~~~~~~gkW~A~I~~~gK~~~LG~F~T~EeAArAyD~Aa~k~~G~~a~-~NFp~s~y~~eL~qL-------r~ 247 (310)
..+|-||.++-+.-+-.+-|+..||-+.-|.. ++++|..|..+.+..+....-. ..|+ ++. +.++ -.
T Consensus 44 P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGak-S~e~a~~a~~~i~~~L~~lG~~~~~~~--~~~--I~NIVas~~l~~~ 118 (198)
T 1mp9_A 44 PDQFPGLIFRLESPKITSLIFKSGKMVVTGAK-STDELIKAVKRIIKTLKKYGMQLTGKP--KIQ--IQNIVASANLHVI 118 (198)
T ss_dssp TTTCSSEEEEETTTTEEEEECTTSEEEEECCS-SHHHHHHHHHHHHHHHHHTTCCCSSCC--EEE--EEEEEEEEECSSE
T ss_pred CccccceEEEcCCCceEEEEeCCCeEEEeccC-CHHHHHHHHHHHHHHHHHcCCcccCcC--ceE--EEEEEEEeeCCCc
Confidence 34688998888888999999999999988875 5678888888776665331111 1121 111 1111 12
Q ss_pred cCHHHHHHHHhhccCCcccCCCccccceec-cCCeeeEEEceecCCeEEEecCCCCHHHHhhh
Q 021606 248 LSKEEFVLILRRQSNGFARGSSKYRGVTLH-KCGRWEARMGQLLGKKYVYLGLFDNEAEAARS 309 (310)
Q Consensus 248 LSKEE~V~~LRr~s~g~sR~sSkYrGV~~~-k~gKW~ArIg~~~gkk~~~LG~F~teeEAArA 309 (310)
+..+.+...++.. .=.-..|-|+.++ ..-|=.+.| |..||-+..|. .+++++..|
T Consensus 119 i~L~~la~~~~~~----~YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A 174 (198)
T 1mp9_A 119 VNLDKAAFLLENN----MYEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVHKA 174 (198)
T ss_dssp ECHHHHHHHSSSE----ECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHH
T ss_pred cCHHHHHhhcCCc----EECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHH
Confidence 3445554443221 1234578998764 345667777 88888777775 566666655
No 11
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=49.57 E-value=17 Score=32.53 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=31.2
Q ss_pred eeeeecCCCcEEEEEEeCCeEeeecCCCCHHHHHHHHHHHHHHH
Q 021606 181 GVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKF 224 (310)
Q Consensus 181 GV~~~~~~gkW~A~I~~~gK~~~LG~F~T~EeAArAyD~Aa~k~ 224 (310)
||+ .++.|.|+.+....||++.+|. |..||..+...+...+
T Consensus 15 ~v~-~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLY-IRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEE-EETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cce-ecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 565 4677899988777899999996 8888877766655544
No 12
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=37.57 E-value=79 Score=23.81 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=27.6
Q ss_pred CcEEEEEEeCCe--EeeecCCC--CHHHHHHHHHHHHHHH
Q 021606 189 SRWESHIWDCGK--QVYLGGFD--TAHSAARAYDRAAIKF 224 (310)
Q Consensus 189 gkW~A~I~~~gK--~~~LG~F~--T~EeAArAyD~Aa~k~ 224 (310)
..|.-+.+.+|| ++-||.|. |..+|-...+++...+
T Consensus 36 K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 36 RHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 469888888887 47899996 5778877777766555
No 13
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=22.32 E-value=1.7e+02 Score=22.87 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=26.7
Q ss_pred CcEEEEEEeCCe--EeeecCCC--CHHHHHHHHHHHHHHH
Q 021606 189 SRWESHIWDCGK--QVYLGGFD--TAHSAARAYDRAAIKF 224 (310)
Q Consensus 189 gkW~A~I~~~gK--~~~LG~F~--T~EeAArAyD~Aa~k~ 224 (310)
..|.-+.+.+|| ++-||.|. |..+|-...+.+...+
T Consensus 36 K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 36 KYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 469888888887 47899996 5777776666665554
No 14
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=21.35 E-value=1.2e+02 Score=24.37 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=30.1
Q ss_pred CcEEEEEEeCCeEeeecCCCCHHHHHHHHHHHHHHHcC
Q 021606 189 SRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRG 226 (310)
Q Consensus 189 gkW~A~I~~~gK~~~LG~F~T~EeAArAyD~Aa~k~~G 226 (310)
.-|.|.|.....-+-++...+++.|..|..+|+.+|-+
T Consensus 78 ~~wva~Vk~G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 78 DHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred cEEEEEECCCCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 45999998655566677778899999999999988743
No 15
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=20.94 E-value=81 Score=22.73 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=18.4
Q ss_pred EeeecCCCCHHHHHHHHHHHHH
Q 021606 201 QVYLGGFDTAHSAARAYDRAAI 222 (310)
Q Consensus 201 ~~~LG~F~T~EeAArAyD~Aa~ 222 (310)
+|.+|-|.+.++|..+.++...
T Consensus 47 RV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 47 RVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHHH
Confidence 7899999999999888766554
Done!