Query 021606
Match_columns 310
No_of_seqs 274 out of 1377
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 06:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021606.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021606hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gcca_ d.10.1.2 (A:) GCC-box 99.8 9.9E-21 7.2E-25 139.4 6.5 58 178-236 2-62 (63)
2 d1gcca_ d.10.1.2 (A:) GCC-box 99.3 8.5E-13 6.2E-17 96.5 3.2 41 270-310 2-43 (63)
3 d1qnaa1 d.129.1.1 (A:17-115) T 50.7 22 0.0016 25.8 6.7 50 175-225 37-86 (99)
4 d1mp9a1 d.129.1.1 (A:5-96) TAT 47.0 23 0.0017 25.2 6.3 49 175-224 39-87 (92)
5 d1aisa1 d.129.1.1 (A:1-92) TAT 41.5 22 0.0016 25.4 5.3 50 175-225 39-88 (92)
6 d1mp9a2 d.129.1.1 (A:97-197) T 40.0 26 0.0019 25.4 5.7 50 175-225 38-87 (101)
7 d1qnaa2 d.129.1.1 (A:116-198) 37.7 32 0.0023 23.9 5.7 48 175-223 29-76 (83)
8 d1aisa2 d.129.1.1 (A:93-181) T 35.9 36 0.0026 24.0 5.8 49 175-224 38-86 (89)
9 d1utaa_ d.58.52.1 (A:) Cell di 17.6 51 0.0037 22.0 3.4 21 201-221 43-63 (77)
10 d2fh1a2 d.109.1.1 (A:533-628) 8.1 2.1E+02 0.016 19.5 4.4 31 191-221 32-64 (96)
No 1
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.81 E-value=9.9e-21 Score=139.45 Aligned_cols=58 Identities=47% Similarity=0.712 Sum_probs=53.2
Q ss_pred CeEeeeeecCCCcEEEEEEe---CCeEeeecCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 021606 178 QYRGVTFYRRTSRWESHIWD---CGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADLNFGVT 236 (310)
Q Consensus 178 ~yrGV~~~~~~gkW~A~I~~---~gK~~~LG~F~T~EeAArAyD~Aa~k~~G~~a~~NFp~s 236 (310)
+||||+++ ++|||+|+|++ +++++|||+|+|+||||+|||.|+++++|..+.+|||+.
T Consensus 2 ~yrGVr~r-~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~ 62 (63)
T d1gcca_ 2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcceEeEC-CCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence 59999965 57999999986 568999999999999999999999999999999999964
No 2
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.26 E-value=8.5e-13 Score=96.50 Aligned_cols=41 Identities=29% Similarity=0.525 Sum_probs=36.8
Q ss_pred ccccceeccCCeeeEEEcee-cCCeEEEecCCCCHHHHhhhC
Q 021606 270 KYRGVTLHKCGRWEARMGQL-LGKKYVYLGLFDNEAEAARSL 310 (310)
Q Consensus 270 kYrGV~~~k~gKW~ArIg~~-~gkk~~~LG~F~teeEAArAY 310 (310)
+|+||++++.|||+|+|+.+ ..+++++||+|+|+||||+||
T Consensus 2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAY 43 (63)
T d1gcca_ 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAY 43 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHH
T ss_pred CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHH
Confidence 59999998899999999754 456789999999999999998
No 3
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=50.75 E-value=22 Score=25.83 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=42.2
Q ss_pred CCCCeEeeeeecCCCcEEEEEEeCCeEeeecCCCCHHHHHHHHHHHHHHHc
Q 021606 175 RSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFR 225 (310)
Q Consensus 175 ~tS~yrGV~~~~~~gkW~A~I~~~gK~~~LG~F~T~EeAArAyD~Aa~k~~ 225 (310)
+..+|-|+.++-..-+=.+-|+..||-+-.|. .++++|..|..+.+..+.
T Consensus 37 ePe~fpgli~R~~~P~~t~lIF~SGKivitGa-ks~~~~~~a~~~i~~~l~ 86 (99)
T d1qnaa1 37 NPKRFAAVIMRIREPKTTALIFASGKMVCTGA-KSEDFSKMAARKYARIVQ 86 (99)
T ss_dssp CTTTCSEEEEEETTTTEEEEEETTSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred CcccCCEEEEEeCCCcEEEEEEcCCEEEEecc-CCHHHHHHHHHHHHHHHH
Confidence 35678999988888899999999999988886 578889999888887775
No 4
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=46.95 E-value=23 Score=25.22 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=41.1
Q ss_pred CCCCeEeeeeecCCCcEEEEEEeCCeEeeecCCCCHHHHHHHHHHHHHHH
Q 021606 175 RSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKF 224 (310)
Q Consensus 175 ~tS~yrGV~~~~~~gkW~A~I~~~gK~~~LG~F~T~EeAArAyD~Aa~k~ 224 (310)
....|-|+.++-..-+-.+-|+..||-+-.|. .+.++|..|+.+....+
T Consensus 39 ePe~fpgli~R~~~p~~t~lIF~SGkivitGa-ks~~~~~~a~~~~~~~L 87 (92)
T d1mp9a1 39 DPDQFPGLIFRLESPKITSLIFKSGKMVVTGA-KSTDELIKAVKRIIKTL 87 (92)
T ss_dssp CTTTCSSEEEEETTTTEEEEECTTSEEEEECC-SSHHHHHHHHHHHHHHH
T ss_pred CCccCceEEEEECCCcEEEEEEcCCEEEEEcc-CCHHHHHHHHHHHHHHH
Confidence 45778999988888888999999999987775 68899999998887665
No 5
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=41.45 E-value=22 Score=25.40 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=40.6
Q ss_pred CCCCeEeeeeecCCCcEEEEEEeCCeEeeecCCCCHHHHHHHHHHHHHHHc
Q 021606 175 RSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFR 225 (310)
Q Consensus 175 ~tS~yrGV~~~~~~gkW~A~I~~~gK~~~LG~F~T~EeAArAyD~Aa~k~~ 225 (310)
....|-|+.++-..-+-..-|+..||-+-.|. .|.++|..|+......+.
T Consensus 39 ePe~fpgl~~R~~~p~~~~lIF~sGkivitGa-kS~~~~~~a~~~i~~~l~ 88 (92)
T d1aisa1 39 NPEEFPGIICHLDDPKVALLIFSSGKLVVTGA-KSVQDIERAVAKLAQKLK 88 (92)
T ss_dssp CTTTCSSEEEECSSSCCEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred CcccCCeEEEEeCCCcEEEEEECCCEEEEEcc-CCHHHHHHHHHHHHHHHH
Confidence 45679999987777788888889999887765 689999999988876653
No 6
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=39.99 E-value=26 Score=25.42 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=41.4
Q ss_pred CCCCeEeeeeecCCCcEEEEEEeCCeEeeecCCCCHHHHHHHHHHHHHHHc
Q 021606 175 RSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFR 225 (310)
Q Consensus 175 ~tS~yrGV~~~~~~gkW~A~I~~~gK~~~LG~F~T~EeAArAyD~Aa~k~~ 225 (310)
....|-|+.++-..-+-.+.|+..||-+-.|. .+.+++.+|+.+....+.
T Consensus 38 ePe~fpgli~R~~~pk~t~lIF~SGKivitGa-ks~~~~~~a~~~i~~~L~ 87 (101)
T d1mp9a2 38 EPEQFPGLIYRMDEPRVVLLIFSSGKMVITGA-KREDEVHKAVKKIFDKLV 87 (101)
T ss_dssp CTTTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred CcccCCeEEEEecCCcEEEEEEcCCEEEEEcc-CCHHHHHHHHHHHHHHHH
Confidence 35678999988888888999999999988876 688999999988876654
No 7
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=37.73 E-value=32 Score=23.92 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=38.8
Q ss_pred CCCCeEeeeeecCCCcEEEEEEeCCeEeeecCCCCHHHHHHHHHHHHHH
Q 021606 175 RSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIK 223 (310)
Q Consensus 175 ~tS~yrGV~~~~~~gkW~A~I~~~gK~~~LG~F~T~EeAArAyD~Aa~k 223 (310)
....|.|+.++-..-+=.+-|+..||-+-.|. .+++++..|+....-.
T Consensus 29 ePe~fpgl~~R~~~pk~~~lIF~SGkivitGa-ks~~~~~~a~~~i~~~ 76 (83)
T d1qnaa2 29 EPELFPGLIYRMKVPKIVLLIFVSGKIVITGA-KMRDETYKAFENIYPV 76 (83)
T ss_dssp CTTTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHH
T ss_pred ChhhCCeEEEEECCCCeEEEEEcCCEEEEECC-CCHHHHHHHHHHHHHH
Confidence 35678999987787788899999999998886 5788888888776533
No 8
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=35.90 E-value=36 Score=24.01 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=40.3
Q ss_pred CCCCeEeeeeecCCCcEEEEEEeCCeEeeecCCCCHHHHHHHHHHHHHHH
Q 021606 175 RSSQYRGVTFYRRTSRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKF 224 (310)
Q Consensus 175 ~tS~yrGV~~~~~~gkW~A~I~~~gK~~~LG~F~T~EeAArAyD~Aa~k~ 224 (310)
....|-||.++-..-+=.+-|+..||-+-.|. .++++|..|+......+
T Consensus 38 ~Pe~fpgli~R~~~p~~t~lIF~SGKivitGa-ks~~~~~~a~~~i~~~L 86 (89)
T d1aisa2 38 EPEQFPGVIYRVKEPKSVILLFSSGKIVCSGA-KSEADAWEAVRKLLREL 86 (89)
T ss_dssp CTTTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred CcccCceEEEEEcCCcEEEEEEcCCEEEEEcc-CCHHHHHHHHHHHHHHH
Confidence 35678999987777788889999999988876 68899999988877655
No 9
>d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]}
Probab=17.64 E-value=51 Score=22.02 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.0
Q ss_pred EeeecCCCCHHHHHHHHHHHH
Q 021606 201 QVYLGGFDTAHSAARAYDRAA 221 (310)
Q Consensus 201 ~~~LG~F~T~EeAArAyD~Aa 221 (310)
+|.+|-|.+.++|..+..+..
T Consensus 43 RV~vGpf~~~~~A~~~~~~L~ 63 (77)
T d1utaa_ 43 RVVIGPVKGKENADSTLNRLK 63 (77)
T ss_dssp EEEESSCBTTTHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHH
Confidence 788999999999998877664
No 10
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.11 E-value=2.1e+02 Score=19.52 Aligned_cols=31 Identities=6% Similarity=0.072 Sum_probs=24.5
Q ss_pred EEEEEEeCCe--EeeecCCCCHHHHHHHHHHHH
Q 021606 191 WESHIWDCGK--QVYLGGFDTAHSAARAYDRAA 221 (310)
Q Consensus 191 W~A~I~~~gK--~~~LG~F~T~EeAArAyD~Aa 221 (310)
.-+.|.+.++ .+|.|...+.+|-..|...|.
T Consensus 32 ~d~fILd~~~~iyvW~G~~s~~~er~~a~~~a~ 64 (96)
T d2fh1a2 32 NDAFVLKTPSAAYLWVGTGASEAEKTGAQELLR 64 (96)
T ss_dssp TSEEEEECSSCEEEEECTTCCHHHHHHHHHHHH
T ss_pred CCeEEEECCCEEEEEECCCCCHHHHHHHHHHHH
Confidence 3466777665 489999999999999988774
Done!