Query 021607
Match_columns 310
No_of_seqs 184 out of 1520
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 6.7E-85 1.4E-89 580.6 27.7 293 2-309 20-320 (321)
2 KOG0819 Annexin [Intracellular 100.0 4.2E-49 9.1E-54 351.4 20.4 212 79-307 17-243 (321)
3 PF00191 Annexin: Annexin; In 99.7 6.4E-18 1.4E-22 120.4 7.4 66 82-147 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.6 1.1E-15 2.3E-20 108.9 6.6 64 2-75 1-66 (66)
5 smart00335 ANX Annexin repeats 99.5 5E-14 1.1E-18 95.7 5.6 53 95-147 1-53 (53)
6 smart00335 ANX Annexin repeats 99.3 6.7E-12 1.5E-16 85.2 5.7 51 255-305 3-53 (53)
7 PF14003 YlbE: YlbE-like prote 68.3 8.2 0.00018 26.9 3.4 37 257-294 12-48 (65)
8 PF14003 YlbE: YlbE-like prote 48.8 37 0.0008 23.7 4.0 47 102-148 14-61 (65)
9 PF00249 Myb_DNA-binding: Myb- 47.6 61 0.0013 20.6 4.8 35 81-115 6-42 (48)
10 PF00249 Myb_DNA-binding: Myb- 40.6 64 0.0014 20.5 4.1 33 2-34 7-41 (48)
11 smart00717 SANT SANT SWI3, AD 32.2 1.2E+02 0.0026 18.3 4.7 34 82-115 7-41 (49)
12 PRK10969 DNA polymerase III su 28.7 1.5E+02 0.0032 21.4 4.5 36 268-303 17-53 (75)
13 PF13062 DUF3924: Protein of u 28.6 53 0.0011 21.8 2.1 20 270-289 15-34 (62)
14 COG5126 FRQ1 Ca2+-binding prot 27.6 3.4E+02 0.0074 22.6 7.3 85 23-121 9-99 (160)
15 PF13720 Acetyltransf_11: Udp 25.2 65 0.0014 23.5 2.3 21 107-127 27-47 (83)
16 COG5118 BDP1 Transcription ini 23.9 73 0.0016 30.2 2.9 36 2-40 371-406 (507)
17 PF13801 Metal_resist: Heavy-m 22.4 2E+02 0.0044 21.4 4.9 83 20-114 34-124 (125)
18 COG5118 BDP1 Transcription ini 22.1 90 0.0019 29.6 3.1 40 81-123 370-409 (507)
19 COG2973 TrpR Trp operon repres 21.7 3.7E+02 0.008 20.5 6.1 59 57-130 17-76 (103)
20 cd00167 SANT 'SWI3, ADA2, N-Co 20.8 2E+02 0.0043 17.0 4.8 34 82-115 5-39 (45)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-85 Score=580.64 Aligned_cols=293 Identities=35% Similarity=0.581 Sum_probs=284.2
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHh-cccccchHHhhhchhHHHHHHHHhhc-ChHHHHHHHhCCC
Q 021607 2 AEIEALIKAFSGHGVDEKTVISILGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLWAMHP 79 (310)
Q Consensus 2 ~da~~l~~A~~g~gtde~~li~il~~rs~~qr~~i~~~y-~~~~~~~~~~~~~~~~L~~~l~~e~s-~~~~~l~~l~~~~ 79 (310)
.||+.|++||+||||||.+||+||++|||.|||.|+++| ..||+| |.++|++|+| +|++++++|+.||
T Consensus 20 ~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkD----------Li~~Lk~ELsG~Fe~~i~al~~~p 89 (321)
T KOG0819|consen 20 QDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKD----------LIKDLKSELSGDFERAIVALMKPP 89 (321)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHH----------HHHHHHHHhCccHHHHHHHHcCCH
Confidence 699999999999999999999999999999999999999 999998 9999999999 9999999999999
Q ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhcccchHHhhhhcccccHHHHHHHHHhccccCCCCCC
Q 021607 80 WERDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVALVSAYRYEGPKVK 159 (310)
Q Consensus 80 ~~~da~~L~~A~~g~gtde~~lieIl~~rs~~q~~~I~~~Y~~~y~~~L~~~i~~~~sG~~~~~l~~ll~~~R~e~~~v~ 159 (310)
+++||..|++||+|.||||.+||||+|||||.|+++|+++|+..|++||++||.+++||+|+++|+.|++|.|+|+..||
T Consensus 90 ~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~~~vd 169 (321)
T KOG0819|consen 90 AEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEGDRVD 169 (321)
T ss_pred HHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhccccCCCCchHHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHhhhhh--h----hHHHHHHhhc
Q 021607 160 EDVAKSEAKALISAVKNAEKQNPIENDEVVRILSTRSKPHLKSVFKHYKEIAGQHFEDELDVH--L----ILQAAVQCLI 233 (310)
Q Consensus 160 ~~~~~~dA~~L~~a~~g~g~~~~~d~~~li~Il~~rs~~~l~~i~~~Y~~~~g~~L~~~I~~e--~----~~~~~l~~~~ 233 (310)
...|+.||+.|++|++.+ |++|+..|+.||++||..||+.++++|++.+|+++++.|+++ | .++.++.|+.
T Consensus 170 ~~la~~dA~~L~~Age~k---~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~c~~ 246 (321)
T KOG0819|consen 170 DALAKQDAQDLYEAGEKK---WGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVKCIR 246 (321)
T ss_pred HHHHHHHHHHHHHHhhhh---ccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHHHHc
Confidence 999999999999999864 568999999999999999999999999999999999999997 4 4567778999
Q ss_pred CccchhHHHHHHHHhccccccccchhhHHhhccCHHHHHHHHHHHHHHcCCcHHHHHhhhccHHHHHHHHHhcccC
Q 021607 234 TPQSYFSRVLDEAMRDGADKNTKKGLTRVLVTRADVDIRAISDDYRNHYAIPLADKIEAKAKGSYKEFLLTLMARG 309 (310)
Q Consensus 234 ~~~~~~a~~l~~a~~g~~~~~~~~~liril~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG~~~~~Ll~ll~~~ 309 (310)
+||.|||++||.||+|.||+ +.+||||+|+|||+||..|+.+|+++||+||.++|+.+|||||+++||+||++.
T Consensus 247 n~~~yFA~~L~~amkg~GTd--d~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL~g~~ 320 (321)
T KOG0819|consen 247 NPPAYFAERLRKAMKGLGTD--DKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALLALLGGD 320 (321)
T ss_pred CHHHHHHHHHHHHHhccCCC--ccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHHHHhCCC
Confidence 99999999999999999985 899999999999999999999999999999999999999999999999999874
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-49 Score=351.35 Aligned_cols=212 Identities=21% Similarity=0.355 Sum_probs=201.7
Q ss_pred ChHHHHHHHHHHhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhcccchHHhhhhcccccHHHHHHHHHhccccCCCCC
Q 021607 79 PWERDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVALVSAYRYEGPKV 158 (310)
Q Consensus 79 ~~~~da~~L~~A~~g~gtde~~lieIl~~rs~~q~~~I~~~Y~~~y~~~L~~~i~~~~sG~~~~~l~~ll~~~R~e~~~v 158 (310)
.+..||+.|++||+|+||||.+||+||+.|||.|++.|+++|+..||+||.+++++++||+|++++++|+.
T Consensus 17 ~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al~~--------- 87 (321)
T KOG0819|consen 17 DPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVALMK--------- 87 (321)
T ss_pred ChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHHcC---------
Confidence 47899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHHhhhccccCCCCchHHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHhhhhh--hhHHHHHHhhcCcc
Q 021607 159 KEDVAKSEAKALISAVKNAEKQNPIENDEVVRILSTRSKPHLKSVFKHYKEIAGQHFEDELDVH--LILQAAVQCLITPQ 236 (310)
Q Consensus 159 ~~~~~~~dA~~L~~a~~g~g~~~~~d~~~li~Il~~rs~~~l~~i~~~Y~~~~g~~L~~~I~~e--~~~~~~l~~~~~~~ 236 (310)
+|+++||++|++|++|.|| |++++|||+|+|||.||++|+++|+..|++||+++|.++ |.|+++|..++++.
T Consensus 88 --~p~~~DA~~l~~amkg~gt----de~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~ 161 (321)
T KOG0819|consen 88 --PPAEYDAKELKKAMKGLGT----DEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGN 161 (321)
T ss_pred --CHHHhHHHHHHHHHhccCc----chhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcC
Confidence 8999999999999999876 899999999999999999999999999999999999998 99999999999887
Q ss_pred ch------------hHHHHHHHHhc-cccccccchhhHHhhccCHHHHHHHHHHHHHHcCCcHHHHHhhhccHHHHHHHH
Q 021607 237 SY------------FSRVLDEAMRD-GADKNTKKGLTRVLVTRADVDIRAISDDYRNHYAIPLADKIEAKAKGSYKEFLL 303 (310)
Q Consensus 237 ~~------------~a~~l~~a~~g-~~~~~~~~~liril~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG~~~~~Ll 303 (310)
|+ +|..|+.|... +++ |+..+++||++||..||..++.+|++.+|+++.++|+++++|+++++|+
T Consensus 162 R~e~~~vd~~la~~dA~~L~~Age~k~gt--de~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~ll 239 (321)
T KOG0819|consen 162 RDEGDRVDDALAKQDAQDLYEAGEKKWGT--DEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLL 239 (321)
T ss_pred CccCCCcCHHHHHHHHHHHHHHhhhhccC--cHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHH
Confidence 77 37788888865 454 4789999999999999999999999999999999999999999999999
Q ss_pred Hhcc
Q 021607 304 TLMA 307 (310)
Q Consensus 304 ~ll~ 307 (310)
+++.
T Consensus 240 aiv~ 243 (321)
T KOG0819|consen 240 AIVK 243 (321)
T ss_pred HHHH
Confidence 9985
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.74 E-value=6.4e-18 Score=120.39 Aligned_cols=66 Identities=36% Similarity=0.537 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhcccchHHhhhhcccccHHHHHHHH
Q 021607 82 RDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVAL 147 (310)
Q Consensus 82 ~da~~L~~A~~g~gtde~~lieIl~~rs~~q~~~I~~~Y~~~y~~~L~~~i~~~~sG~~~~~l~~l 147 (310)
+||+.|++|++|+|+|+.++++|||+||+.|++.|+++|+..||++|.++|++++||+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999875
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.62 E-value=1.1e-15 Score=108.89 Aligned_cols=64 Identities=25% Similarity=0.364 Sum_probs=61.3
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHh-cccccchHHhhhchhHHHHHHHHhhc-ChHHHHHHH
Q 021607 2 AEIEALIKAFSGHGVDEKTVISILGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLW 75 (310)
Q Consensus 2 ~da~~l~~A~~g~gtde~~li~il~~rs~~qr~~i~~~y-~~~~~~~~~~~~~~~~L~~~l~~e~s-~~~~~l~~l 75 (310)
+||+.|++|++|+|+|+..|++|+++||+.|++.|.+.| ..||++ |.++|++++| +|++++++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~----------L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKD----------LEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-----------HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHH----------HHHHHHHhCCHHHHHHHHhC
Confidence 599999999999999999999999999999999999999 999998 9999999999 999999875
No 5
>smart00335 ANX Annexin repeats.
Probab=99.49 E-value=5e-14 Score=95.74 Aligned_cols=53 Identities=30% Similarity=0.548 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHhhcccchHHhhhhcccccHHHHHHHH
Q 021607 95 PNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVAL 147 (310)
Q Consensus 95 gtde~~lieIl~~rs~~q~~~I~~~Y~~~y~~~L~~~i~~~~sG~~~~~l~~l 147 (310)
||||..|++|+|+||+.|++.|+++|+..||++|.++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999988764
No 6
>smart00335 ANX Annexin repeats.
Probab=99.28 E-value=6.7e-12 Score=85.19 Aligned_cols=51 Identities=29% Similarity=0.655 Sum_probs=49.1
Q ss_pred ccchhhHHhhccCHHHHHHHHHHHHHHcCCcHHHHHhhhccHHHHHHHHHh
Q 021607 255 TKKGLTRVLVTRADVDIRAISDDYRNHYAIPLADKIEAKAKGSYKEFLLTL 305 (310)
Q Consensus 255 ~~~~liril~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~sG~~~~~Ll~l 305 (310)
|+..|++|+++|++.|+..|+.+|++.||++|.++|++++||+|+++|++|
T Consensus 3 de~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 3 DEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 478999999999999999999999999999999999999999999999875
No 7
>PF14003 YlbE: YlbE-like protein
Probab=68.33 E-value=8.2 Score=26.95 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=32.2
Q ss_pred chhhHHhhccCHHHHHHHHHHHHHHcCCcHHHHHhhhc
Q 021607 257 KGLTRVLVTRADVDIRAISDDYRNHYAIPLADKIEAKA 294 (310)
Q Consensus 257 ~~liril~~rs~~~l~~I~~~Y~~~yg~~L~~~I~~e~ 294 (310)
..+.|+| +|.+.++...-.++...||+++-+.|++-.
T Consensus 12 P~WYR~L-sR~P~~l~~fe~~a~~~y~kT~p~rVek~~ 48 (65)
T PF14003_consen 12 PIWYRIL-SRNPEELEAFEKEAKHFYKKTIPHRVEKFS 48 (65)
T ss_pred cHHHHHH-ccCHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4677766 799999999999999999999999998653
No 8
>PF14003 YlbE: YlbE-like protein
Probab=48.84 E-value=37 Score=23.74 Aligned_cols=47 Identities=13% Similarity=0.211 Sum_probs=34.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccchHHhhhhcccc-cHHHHHHHHH
Q 021607 102 VEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHG-KEKKLLVALV 148 (310)
Q Consensus 102 ieIl~~rs~~q~~~I~~~Y~~~y~~~L~~~i~~~~sG-~~~~~l~~ll 148 (310)
.--..+|.|.++.....++...|++.+.+.|..-..+ .+-.+++.++
T Consensus 14 WYR~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M~ 61 (65)
T PF14003_consen 14 WYRILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEMF 61 (65)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHHH
Confidence 3356789999999999999999999999988764333 3334444443
No 9
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=47.59 E-value=61 Score=20.61 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCCC-HHHHHHHHh-cCCHHHHHH
Q 021607 81 ERDARLIKEALKKGPNS-NSVIVEIAS-TRSSDELLG 115 (310)
Q Consensus 81 ~~da~~L~~A~~g~gtd-e~~lieIl~-~rs~~q~~~ 115 (310)
..+-..|.+|++-.|++ -..|-+-+. +||..|...
T Consensus 6 ~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~ 42 (48)
T PF00249_consen 6 EEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRS 42 (48)
T ss_dssp HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHH
Confidence 34556788999999988 888999999 999988754
No 10
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=40.60 E-value=64 Score=20.50 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=27.2
Q ss_pred hHHHHHHHHhcCCCCC-HHHHHHHhc-CCCHHHHH
Q 021607 2 AEIEALIKAFSGHGVD-EKTVISILG-NSQPEHRQ 34 (310)
Q Consensus 2 ~da~~l~~A~~g~gtd-e~~li~il~-~rs~~qr~ 34 (310)
.+-+.|.+|++..|.+ =..|-..+. +||+.|..
T Consensus 7 eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~ 41 (48)
T PF00249_consen 7 EEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCR 41 (48)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHH
Confidence 4667899999999998 678888888 89988764
No 11
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=32.24 E-value=1.2e+02 Score=18.33 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcCC-CCHHHHHHHHhcCCHHHHHH
Q 021607 82 RDARLIKEALKKGP-NSNSVIVEIASTRSSDELLG 115 (310)
Q Consensus 82 ~da~~L~~A~~g~g-tde~~lieIl~~rs~~q~~~ 115 (310)
.+-..|..++...| .+-..|-+.+.+||+.++..
T Consensus 7 ~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~ 41 (49)
T smart00717 7 EEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRE 41 (49)
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHH
Confidence 44556777888888 78899999999999987754
No 12
>PRK10969 DNA polymerase III subunit theta; Reviewed
Probab=28.72 E-value=1.5e+02 Score=21.38 Aligned_cols=36 Identities=19% Similarity=0.538 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHcCCc-HHHHHhhhccHHHHHHHH
Q 021607 268 DVDIRAISDDYRNHYAIP-LADKIEAKAKGSYKEFLL 303 (310)
Q Consensus 268 ~~~l~~I~~~Y~~~yg~~-L~~~I~~e~sG~~~~~Ll 303 (310)
..||.+-..+|++.|+++ ..+.|+.+..-+++...-
T Consensus 17 nvDLaASgVafkER~n~pvi~e~ve~eqPe~lR~yFr 53 (75)
T PRK10969 17 NVDLAASGVAFKERYNMPVIAEAVEREQPEHLRSYFR 53 (75)
T ss_pred HHHHHHHHHHHHHHcCCcccHHHHHHhCCHHHHHHHH
Confidence 357888888899999988 677899988888877653
No 13
>PF13062 DUF3924: Protein of unknown function (DUF3924)
Probab=28.58 E-value=53 Score=21.75 Aligned_cols=20 Identities=5% Similarity=0.345 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHcCCcHHHH
Q 021607 270 DIRAISDDYRNHYAIPLADK 289 (310)
Q Consensus 270 ~l~~I~~~Y~~~yg~~L~~~ 289 (310)
.|.-++++|+++.|-++.+.
T Consensus 15 kl~llkqayqkktgatises 34 (62)
T PF13062_consen 15 KLDLLKQAYQKKTGATISES 34 (62)
T ss_pred HHHHHHHHHHhhcCCccchh
Confidence 46778888999888776543
No 14
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=27.61 E-value=3.4e+02 Score=22.59 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=54.1
Q ss_pred HHhcCCCHHHHHHHHHHhcccccchHHhhhchhHHHHHHHHhhc--ChHHHHHHHhCCChHHHHHHHHHHhhc--CCCCH
Q 021607 23 SILGNSQPEHRQAFRKEGGFFAEDERRFERWNDHHVKLLKHEFM--RFKNAVVLWAMHPWERDARLIKEALKK--GPNSN 98 (310)
Q Consensus 23 ~il~~rs~~qr~~i~~~y~~~~~~~~~~~~~~~~L~~~l~~e~s--~~~~~l~~l~~~~~~~da~~L~~A~~g--~gtde 98 (310)
...+.-+..|++.++++|.++.++. ..... ++.+++-.+-.+|++..+..|-..+.. ...|.
T Consensus 9 ~~~~~~t~~qi~~lkeaF~l~D~d~--------------~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf 74 (160)
T COG5126 9 LTFTQLTEEQIQELKEAFQLFDRDS--------------DGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDF 74 (160)
T ss_pred hhcccCCHHHHHHHHHHHHHhCcCC--------------CCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCH
Confidence 3456789999999999996665530 00011 355555566678899999999888875 22467
Q ss_pred HHHHHHHhcCC--HHHHHHHHHHHH
Q 021607 99 SVIVEIASTRS--SDELLGARKAYH 121 (310)
Q Consensus 99 ~~lieIl~~rs--~~q~~~I~~~Y~ 121 (310)
..++.++...+ ..-...++.+|+
T Consensus 75 ~~Fl~~ms~~~~~~~~~Eel~~aF~ 99 (160)
T COG5126 75 PEFLTVMSVKLKRGDKEEELREAFK 99 (160)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHH
Confidence 77666665533 233455555554
No 15
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=25.23 E-value=65 Score=23.54 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=17.1
Q ss_pred cCCHHHHHHHHHHHHhhcccc
Q 021607 107 TRSSDELLGARKAYHSLFEHS 127 (310)
Q Consensus 107 ~rs~~q~~~I~~~Y~~~y~~~ 127 (310)
+-|.+++..|+++|+..|...
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~ 47 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSG 47 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHhCC
Confidence 357889999999999999654
No 16
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=23.87 E-value=73 Score=30.21 Aligned_cols=36 Identities=31% Similarity=0.369 Sum_probs=29.5
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHh
Q 021607 2 AEIEALIKAFSGHGVDEKTVISILGNSQPEHRQAFRKEG 40 (310)
Q Consensus 2 ~da~~l~~A~~g~gtde~~li~il~~rs~~qr~~i~~~y 40 (310)
.|.+..|+|+.-||||..-|-..+.+|+ |..|+..|
T Consensus 371 ~e~ekFYKALs~wGtdF~LIs~lfP~R~---RkqIKaKf 406 (507)
T COG5118 371 KEIEKFYKALSIWGTDFSLISSLFPNRE---RKQIKAKF 406 (507)
T ss_pred HHHHHHHHHHHHhcchHHHHHHhcCchh---HHHHHHHH
Confidence 3678899999999999999988888876 45566666
No 17
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=22.43 E-value=2e+02 Score=21.42 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=40.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHh-cccccchHHhhhchhHHHHHHHHhhc-ChHHHHHHHhCCChHHH-HHHHHHHhhcC--
Q 021607 20 TVISILGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLWAMHPWERD-ARLIKEALKKG-- 94 (310)
Q Consensus 20 ~li~il~~rs~~qr~~i~~~y-~~~~~~~~~~~~~~~~L~~~l~~e~s-~~~~~l~~l~~~~~~~d-a~~L~~A~~g~-- 94 (310)
.....-.+.|++|+..|+..+ ..+..- ..+..++. ....+.-.+..++++.. +..+.+.+...
T Consensus 34 ~~~~~~l~Lt~eQ~~~l~~~~~~~~~~~------------~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~ 101 (125)
T PF13801_consen 34 PMLADMLNLTPEQQAKLRALMDEFRQEM------------RALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQA 101 (125)
T ss_dssp HHHHHHS-TTHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHH
T ss_pred hhhhhhcCCCHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 334455678999999999888 544332 23333333 23333333444443222 12222221110
Q ss_pred ---CCCHHHHHHHHhcCCHHHHH
Q 021607 95 ---PNSNSVIVEIASTRSSDELL 114 (310)
Q Consensus 95 ---gtde~~lieIl~~rs~~q~~ 114 (310)
..-...++++....||+|+.
T Consensus 102 ~l~~~~~~~~~~~~~~LtpeQR~ 124 (125)
T PF13801_consen 102 ELRQERLEHLLEIRAVLTPEQRA 124 (125)
T ss_dssp HHHHHHHHHHHHHHHTT-GGGHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHhC
Confidence 01345677888888887765
No 18
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=22.11 E-value=90 Score=29.65 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 021607 81 ERDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSL 123 (310)
Q Consensus 81 ~~da~~L~~A~~g~gtde~~lieIl~~rs~~q~~~I~~~Y~~~ 123 (310)
..+.+..|+|+.-||||...|-.+.-+|+ +.+|+..|..-
T Consensus 370 ~~e~ekFYKALs~wGtdF~LIs~lfP~R~---RkqIKaKfi~E 409 (507)
T COG5118 370 KKEIEKFYKALSIWGTDFSLISSLFPNRE---RKQIKAKFIKE 409 (507)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHhcCchh---HHHHHHHHHHH
Confidence 57888999999999999999888877775 56666666543
No 19
>COG2973 TrpR Trp operon repressor [Transcription]
Probab=21.72 E-value=3.7e+02 Score=20.48 Aligned_cols=59 Identities=22% Similarity=0.179 Sum_probs=40.3
Q ss_pred HHHHHHHhhc-ChHHHHHHHhCCChHHHHHHHHHHhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhcccchHH
Q 021607 57 HVKLLKHEFM-RFKNAVVLWAMHPWERDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEE 130 (310)
Q Consensus 57 L~~~l~~e~s-~~~~~l~~l~~~~~~~da~~L~~A~~g~gtde~~lieIl~~rs~~q~~~I~~~Y~~~y~~~L~~ 130 (310)
+++.++...+ ++...++.++.+|.+.++-..+ --|++-|..-+.+|++- .+.+|.+...
T Consensus 17 fv~ll~~a~~~d~~~~lL~llLTpdEReal~~R----------v~Iv~eLL~ge~sQREi-----~~~LgvsiAt 76 (103)
T COG2973 17 FVDLLKKAYQEDLHQPLLTLLLTPDEREALGTR----------VRIVEELLRGELSQREI-----AQKLGVSIAT 76 (103)
T ss_pred HHHHHHHHHHhHHHHHHHHHHcCHhHHHHHHHH----------HHHHHHHHhccccHHHH-----HHHhCcchhh
Confidence 5666777777 7878888888899988876533 34556666666677654 5566776543
No 20
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=20.76 E-value=2e+02 Score=16.95 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhcCC-CCHHHHHHHHhcCCHHHHHH
Q 021607 82 RDARLIKEALKKGP-NSNSVIVEIASTRSSDELLG 115 (310)
Q Consensus 82 ~da~~L~~A~~g~g-tde~~lieIl~~rs~~q~~~ 115 (310)
.+-..|.+++...| .+-..+.+.+.+||..|+..
T Consensus 5 eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~ 39 (45)
T cd00167 5 EEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRE 39 (45)
T ss_pred HHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHH
Confidence 34456677777777 78888888888898887654
Done!