BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021608
(310 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9HCU4|CELR2_HUMAN Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens
GN=CELSR2 PE=1 SV=1
Length = 2923
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 221 WESQALLAIEKAGPCPEASFGLGLKACD----WVPKLEVIVQCLGLVLDE 266
W + + A PCP+ SFG ++ CD W+P + C + E
Sbjct: 1985 WWPRTRFGLPAAAPCPKGSFGTAVRHCDEHRGWLPP--NLFNCTSITFSE 2032
>sp|Q9R0M0|CELR2_MOUSE Cadherin EGF LAG seven-pass G-type receptor 2 OS=Mus musculus
GN=Celsr2 PE=1 SV=2
Length = 2920
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 221 WESQALLAIEKAGPCPEASFGLGLKACD----WVP 251
W + + A PCP+ SFG ++ CD W+P
Sbjct: 1986 WWPRTRFGLPAAAPCPKGSFGTAVRHCDEHRGWLP 2020
>sp|Q9QYP2|CELR2_RAT Cadherin EGF LAG seven-pass G-type receptor 2 (Fragment) OS=Rattus
norvegicus GN=Celsr2 PE=2 SV=1
Length = 2144
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 221 WESQALLAIEKAGPCPEASFGLGLKACD----WVP 251
W + + A PCP+ SFG ++ CD W+P
Sbjct: 1210 WWPRTRFGLPAAAPCPKGSFGTAVRHCDEHRGWLP 1244
>sp|A9KEI7|LSPA_COXBN Lipoprotein signal peptidase OS=Coxiella burnetii (strain Dugway
5J108-111) GN=lspA PE=3 SV=1
Length = 163
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 3 LLEVITKAVANHELPGSQLEHPIILNPDNIFLNLKPELEGASAASLVNPVSGWQI 57
LL+ ++K +ANH L L HP+ + P FLN +A S + +GWQI
Sbjct: 21 LLDQLSKYLANHFL---SLGHPVKILP---FLNFTLNYNTGAAFSFLGTENGWQI 69
>sp|A9NBM6|LSPA_COXBR Lipoprotein signal peptidase OS=Coxiella burnetii (strain RSA 331
/ Henzerling II) GN=lspA PE=3 SV=1
Length = 163
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 3 LLEVITKAVANHELPGSQLEHPIILNPDNIFLNLKPELEGASAASLVNPVSGWQI 57
LL+ ++K +ANH L L HP+ + P FLN +A S + +GWQI
Sbjct: 21 LLDQLSKYLANHFL---SLGHPVKILP---FLNFTLNYNTGAAFSFLGTENGWQI 69
>sp|Q83EC8|LSPA_COXBU Lipoprotein signal peptidase OS=Coxiella burnetii (strain RSA 493
/ Nine Mile phase I) GN=lspA PE=3 SV=1
Length = 163
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 3 LLEVITKAVANHELPGSQLEHPIILNPDNIFLNLKPELEGASAASLVNPVSGWQI 57
LL+ ++K +ANH L L HP+ + P FLN +A S + +GWQI
Sbjct: 21 LLDQLSKYLANHFL---SLGHPVKILP---FLNFTLNYNTGAAFSFLGTENGWQI 69
>sp|B8DTA0|SECA_BIFA0 Protein translocase subunit SecA OS=Bifidobacterium animalis subsp.
lactis (strain AD011) GN=secA PE=3 SV=1
Length = 974
Score = 32.0 bits (71), Expect = 5.7, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 18/104 (17%)
Query: 47 SLVNPVSGWQISEVDTYLIDSG----------KKFHAKLKRKLKDTNNFDKDE---FIGI 93
++V+ V I E T LI SG ++F AKL KL +++ DE +GI
Sbjct: 205 AIVDEVDSILIDEARTPLIISGPAEGDVTRWYRQF-AKLVLKLNRDEDYEVDEKKKTVGI 263
Query: 94 LNPYLQKIGEKVGISTRINRSDS---GYTQGLIE-KVGFLMGRD 133
L+P + KI + +GI S++ GY I+ K FL RD
Sbjct: 264 LDPGITKIEDYLGIDNLYEPSNTALIGYLNNAIKAKELFLRDRD 307
>sp|P22220|SPE1_AVESA Arginine decarboxylase OS=Avena sativa GN=SPE1 PE=1 SV=1
Length = 607
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 119 TQGLIEKVGFLMGRDVASLVLEACISLRIWELVETLIVHGL 159
T+ LI V + + +D++S++ E ++WE+VE L+ GL
Sbjct: 552 TEELIGTVSYDVKQDISSVIEERARENKVWEMVEKLVESGL 592
>sp|A6NED2|RCCD1_HUMAN RCC1 domain-containing protein 1 OS=Homo sapiens GN=RCCD1 PE=1 SV=1
Length = 376
Score = 31.2 bits (69), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 210 AYGSMGSVRMEWESQALLAIEKAGPCPEA 238
A G+ G + W S+ LLA+ +AGP PEA
Sbjct: 66 ASGAAGRCKDAWASEGLLAVLRAGPGPEA 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,983,357
Number of Sequences: 539616
Number of extensions: 4807678
Number of successful extensions: 11373
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 11369
Number of HSP's gapped (non-prelim): 15
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)