Query 021608
Match_columns 310
No_of_seqs 16 out of 18
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 04:18:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15412 Nse4-Nse3_bdg: Bindin 59.1 21 0.00045 26.5 4.3 40 61-100 1-41 (56)
2 PF15365 PNRC: Proline-rich nu 57.3 11 0.00025 28.6 2.8 20 41-60 12-31 (58)
3 PF13991 BssS: BssS protein fa 47.2 8 0.00017 31.0 0.6 15 51-65 2-16 (73)
4 PF03790 KNOX1: KNOX1 domain ; 35.6 19 0.00041 26.6 1.0 22 156-177 4-25 (45)
5 PF08006 DUF1700: Protein of u 35.6 70 0.0015 27.7 4.6 59 69-140 4-62 (181)
6 PRK12301 bssS biofilm formatio 35.4 16 0.00036 30.1 0.7 20 51-70 12-31 (84)
7 PF04003 Utp12: Dip2/Utp12 Fam 35.3 75 0.0016 24.9 4.4 53 250-302 46-99 (110)
8 PF07899 Frigida: Frigida-like 33.5 2.1E+02 0.0045 27.7 7.8 123 61-212 101-224 (290)
9 PRK05686 fliG flagellar motor 29.8 66 0.0014 31.0 3.9 109 72-197 42-153 (339)
10 PF13606 Ank_3: Ankyrin repeat 28.1 56 0.0012 20.9 2.1 22 138-159 5-26 (30)
11 PRK07194 fliG flagellar motor 28.0 1E+02 0.0022 29.9 4.8 74 73-153 38-114 (334)
12 COG5552 Uncharacterized conser 27.3 46 0.001 27.5 2.0 53 50-106 6-61 (88)
13 PF04675 DNA_ligase_A_N: DNA l 26.6 3.9E+02 0.0085 22.6 8.1 110 74-204 8-124 (177)
14 PF09817 DUF2352: Uncharacteri 26.4 1.3E+02 0.0029 32.0 5.6 77 71-159 330-406 (589)
15 smart00544 MA3 Domain in DAP-5 26.1 95 0.0021 24.3 3.6 58 68-136 52-109 (113)
16 PF14842 FliG_N: FliG N-termin 25.1 1.3E+02 0.0028 24.5 4.2 62 73-141 36-97 (108)
17 COG3587 Restriction endonuclea 24.6 78 0.0017 35.7 3.7 44 57-100 936-982 (985)
18 cd00583 MutH_Sau3AI MutH is a 23.3 65 0.0014 29.5 2.4 59 178-240 102-173 (210)
19 PF11838 ERAP1_C: ERAP1-like C 22.6 3.8E+02 0.0083 24.1 7.2 165 58-224 69-267 (324)
20 smart00587 CHK ZnF_C4 abd HLH 22.2 1.8E+02 0.0038 25.3 4.8 77 23-106 118-195 (196)
21 TIGR00315 cdhB CO dehydrogenas 21.9 93 0.002 27.8 3.0 50 152-203 66-124 (162)
22 cd07232 Pat_PLPL Patain-like p 20.5 60 0.0013 32.5 1.7 65 88-161 30-96 (407)
23 PF09921 DUF2153: Uncharacteri 20.4 1E+02 0.0023 27.2 3.0 53 126-183 58-110 (126)
No 1
>PF15412 Nse4-Nse3_bdg: Binding domain of Nse4/EID3 to Nse3-MAGE
Probab=59.07 E-value=21 Score=26.48 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=31.8
Q ss_pred chhhhhhhhhHHHHHHHhhcC-CCCCChHHHHHHHHHHHHH
Q 021608 61 DTYLIDSGKKFHAKLKRKLKD-TNNFDKDEFIGILNPYLQK 100 (310)
Q Consensus 61 D~~li~~~~~f~~~lk~kLk~-~~~~sk~~f~~lL~~fLe~ 100 (310)
|.++.-.++.|+.+=-+.|+- .+.|+.++|+.-++.|+..
T Consensus 1 DS~~Lv~aSdla~~ka~~lk~~~~~fd~deFv~~l~~fm~~ 41 (56)
T PF15412_consen 1 DSRLLVLASDLAAEKARNLKFGGSGFDVDEFVSKLKTFMGG 41 (56)
T ss_pred CcHHHHHHHHHHHHHHHHhccCCCccCHHHHHHHHHHHhCc
Confidence 566677777777666677765 6789999999999999865
No 2
>PF15365 PNRC: Proline-rich nuclear receptor coactivator
Probab=57.27 E-value=11 Score=28.60 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=17.4
Q ss_pred CCCCCCccCCCCCCcccCcc
Q 021608 41 EGASAASLVNPVSGWQISEV 60 (310)
Q Consensus 41 e~~~ss~l~~p~sgw~ls~~ 60 (310)
+.|.+++||.|+.-|.-+..
T Consensus 12 ~sP~PssLP~P~f~~~~~~~ 31 (58)
T PF15365_consen 12 NSPSPSSLPLPPFHWKSSPS 31 (58)
T ss_pred CCCChhhcCCCCcccccCcc
Confidence 58899999999999987655
No 3
>PF13991 BssS: BssS protein family
Probab=47.22 E-value=8 Score=31.01 Aligned_cols=15 Identities=53% Similarity=1.125 Sum_probs=12.6
Q ss_pred CCCCcccCccchhhh
Q 021608 51 PVSGWQISEVDTYLI 65 (310)
Q Consensus 51 p~sgw~ls~~D~~li 65 (310)
|+.||.|+|-|.+=+
T Consensus 2 Pv~GW~i~pv~~~da 16 (73)
T PF13991_consen 2 PVTGWDIGPVDSYDA 16 (73)
T ss_pred Ccccceeccccccce
Confidence 899999999887643
No 4
>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=35.60 E-value=19 Score=26.60 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=17.7
Q ss_pred HcCCCCCCCchHHHHHHHhcCC
Q 021608 156 VHGLVDHSSYSNLVTRLATEKR 177 (310)
Q Consensus 156 ~~gLv~hs~yp~Lv~~Lve~~r 177 (310)
...++.||-||+|++.-++=.|
T Consensus 4 KA~I~~HP~Y~~Ll~Ayi~C~K 25 (45)
T PF03790_consen 4 KAKIASHPLYPRLLAAYIDCQK 25 (45)
T ss_pred HHHHHcCCCcHHHHHHHHHHHh
Confidence 3456889999999999887555
No 5
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=35.55 E-value=70 Score=27.70 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=34.3
Q ss_pred hhHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHhccccchhhHHHHHH
Q 021608 69 KKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLE 140 (310)
Q Consensus 69 ~~f~~~lk~kLk~~~~~sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg~~~gr~va~lVl~ 140 (310)
+.|-++|++.|++. +++|..+++.-|=|-+.+.. .+| ..-.+.++++|. |+++|..++.
T Consensus 4 ~efL~~L~~~L~~l---p~~e~~e~l~~Y~e~f~d~~--~~G------~sEeeii~~LG~--P~~iA~~i~~ 62 (181)
T PF08006_consen 4 NEFLNELEKYLKKL---PEEEREEILEYYEEYFDDAG--EEG------KSEEEIIAELGS--PKEIAREILA 62 (181)
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhh--hCC------CCHHHHHHHcCC--HHHHHHHHHH
Confidence 35778999999864 46666666666655555441 111 111344666654 5666666554
No 6
>PRK12301 bssS biofilm formation regulatory protein BssS; Reviewed
Probab=35.37 E-value=16 Score=30.12 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=15.6
Q ss_pred CCCCcccCccchhhhhhhhh
Q 021608 51 PVSGWQISEVDTYLIDSGKK 70 (310)
Q Consensus 51 p~sgw~ls~~D~~li~~~~~ 70 (310)
|+.||.||+-|.+=+-.-+.
T Consensus 12 PvvGWdistvd~YDAmmirl 31 (84)
T PRK12301 12 PLVGWDISTVDSYDALMLRL 31 (84)
T ss_pred ccccccccCcccHhhHHHhh
Confidence 99999999999875544443
No 7
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=35.31 E-value=75 Score=24.88 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=44.3
Q ss_pred CcChHHHHHHHhHhhcccccccccC-hhhHHHHHhHHHHHHHHHHhHhhhcchH
Q 021608 250 VPKLEVIVQCLGLVLDENFSSLVLL-PEFQEELRSIEGVVSTLASEARYCCSLA 302 (310)
Q Consensus 250 VPsl~~V~~~lglVLDe~fSsLVL~-~ef~EeLrsie~~V~sLaaea~~~~~~~ 302 (310)
.|..+-.++|+--++-.|.+.+.=+ +++.+-|+.+...+++-...-+..+..-
T Consensus 46 ~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~~~~l~~l~~~n 99 (110)
T PF04003_consen 46 SPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRERLQNLSKLLDLN 99 (110)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578889999999999999999999 9999999999999887666555544433
No 8
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=33.45 E-value=2.1e+02 Score=27.68 Aligned_cols=123 Identities=22% Similarity=0.236 Sum_probs=70.9
Q ss_pred chhhhhhhhhHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHhccccchhhHHHHHH
Q 021608 61 DTYLIDSGKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLE 140 (310)
Q Consensus 61 D~~li~~~~~f~~~lk~kLk~~~~~sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg~~~gr~va~lVl~ 140 (310)
.+++-+-|++++...|.++.+.++-+.-+..+ ||+=++-+ |++..-+ ..++..++..++.+ +- ...|-
T Consensus 101 s~~vke~A~~lA~~WK~~l~~~~~~~~lea~g----FL~lla~f-gi~s~Fd---~del~~Lv~~va~~---~~-a~~L~ 168 (290)
T PF07899_consen 101 SPEVKEEAKKLAEEWKSKLDGVNNENSLEALG----FLQLLAAF-GIVSEFD---EDELLKLVVSVARR---KQ-APELC 168 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccCCCHHHHH----HHHHHHHc-CCccccC---HHHHHHHHHHhcch---Hh-hHHHH
Confidence 56899999999999999995445456666555 34444444 8888744 45677767666632 22 33333
Q ss_pred hhhhhhhHHHHHHHHHcCCCCCCCchHHHHHHHhcCCCCeeeeeeccCCCCCh-HHHHHHHhhhcCCCchhhh
Q 021608 141 ACISLRIWELVETLIVHGLVDHSSYSNLVTRLATEKRSDLLCLCVKYSPDLGS-SELLCILKYFLCPPKDAYG 212 (310)
Q Consensus 141 ~~~sL~~wd~v~aLi~~gLv~hs~yp~Lv~~Lve~~r~DLvClci~~a~DL~s-SElL~iLkyFL~psk~ay~ 212 (310)
++++|. +. -|++|+.|+.+++.--- +=+-|+++|.- =.-..+||.+|.-+|++..
T Consensus 169 ~sLgl~--------------~k--~~d~V~~LI~~g~~ieA-v~fi~~f~L~dkfpPv~lLk~yl~~~k~~~~ 224 (290)
T PF07899_consen 169 RSLGLS--------------DK--MPDIVEKLIKKGKQIEA-VRFIYAFGLVDKFPPVPLLKSYLEDSKKAAK 224 (290)
T ss_pred HHcCch--------------hh--hHHHHHHHHHCCCccch-HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 343333 22 17888888877764211 11123333321 1245677877655544433
No 9
>PRK05686 fliG flagellar motor switch protein G; Validated
Probab=29.77 E-value=66 Score=30.99 Aligned_cols=109 Identities=16% Similarity=0.294 Sum_probs=70.7
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHhccccchhhHHHHHHhhhhh---hhH
Q 021608 72 HAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISL---RIW 148 (310)
Q Consensus 72 ~~~lk~kLk~~~~~sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg~~~gr~va~lVl~~~~sL---~~w 148 (310)
..++-+.......++.++...+|..|++.+++.-++..+ +..|++.++++ .+|++.+..+++.-..- ..|
T Consensus 42 ~~~l~~~ma~l~~vs~~~~~~vL~ef~~~~~~~~~~~~g----g~~~~~~iL~~---~l~~~~a~~il~~i~~~~~~~~f 114 (339)
T PRK05686 42 VQKLSAAMANLRNVSPEQVEAVLEEFEDEFEAGAYILMG----GIDYARSLLEK---ALGEEKADSILERILESLGTSGF 114 (339)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcccccCC----hHHHHHHHHHH---HcCHHHHHHHHHHHhccccCchH
Confidence 345556677888899999999999999999865332322 23566666664 35567777766653321 356
Q ss_pred HHHHHHHHcCCCCCCCchHHHHHHHhcCCCCeeeeeeccCCCCChHHHH
Q 021608 149 ELVETLIVHGLVDHSSYSNLVTRLATEKRSDLLCLCVKYSPDLGSSELL 197 (310)
Q Consensus 149 d~v~aLi~~gLv~hs~yp~Lv~~Lve~~r~DLvClci~~a~DL~sSElL 197 (310)
+-+..+ .|+.+..+..+-.+..+=+.++|+..=..+++|
T Consensus 115 e~L~~l----------d~~~l~~lL~~EhpqtiA~iLs~l~~~~aa~vL 153 (339)
T PRK05686 115 DFLRKM----------DPQQLANFIRNEHPQTIALILSYLKPDQAAEIL 153 (339)
T ss_pred HHHhcC----------CHHHHHHHHHhcCHHHHHHHHhCCCHHHHHHHH
Confidence 655433 367777788777777777777776544444433
No 10
>PF13606 Ank_3: Ankyrin repeat
Probab=28.06 E-value=56 Score=20.94 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=17.2
Q ss_pred HHHhhhhhhhHHHHHHHHHcCC
Q 021608 138 VLEACISLRIWELVETLIVHGL 159 (310)
Q Consensus 138 Vl~~~~sL~~wd~v~aLi~~gL 159 (310)
.|-.+++-+..|+|+.|+++|.
T Consensus 5 ~Lh~A~~~g~~e~v~~Ll~~ga 26 (30)
T PF13606_consen 5 PLHLAASNGNIEIVKYLLEHGA 26 (30)
T ss_pred HHHHHHHhCCHHHHHHHHHcCC
Confidence 3556677788999999999884
No 11
>PRK07194 fliG flagellar motor switch protein G; Reviewed
Probab=28.00 E-value=1e+02 Score=29.88 Aligned_cols=74 Identities=18% Similarity=0.322 Sum_probs=51.9
Q ss_pred HHHHHhhcCCCCCChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHhccccchhhHHHHHHhhhh---hhhHH
Q 021608 73 AKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACIS---LRIWE 149 (310)
Q Consensus 73 ~~lk~kLk~~~~~sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg~~~gr~va~lVl~~~~s---L~~wd 149 (310)
.+|.+......++++++....|..|.+.+...-|+..| +..|.+.++++ .+|.+-|..+++.-.. -..|+
T Consensus 38 ~~l~~~m~~l~~v~~~~~~~vl~eF~~~~~~~~~~~~g----~~~~~~~~L~~---alg~~~a~~il~~i~~~~~~~~~~ 110 (334)
T PRK07194 38 QRLSQKMARLSGIKVDQARQVLQRFFDDYREQSGINGA----SRSYLQRTLNK---ALGGDIAKSLINSIYGDEIRHRMQ 110 (334)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccc----hHHHHHHHHHH---HcCHHHHHHHHHHHhccccCchHH
Confidence 34556777889999999999999999999877565544 12577776664 5777777777766332 24677
Q ss_pred HHHH
Q 021608 150 LVET 153 (310)
Q Consensus 150 ~v~a 153 (310)
-+..
T Consensus 111 ~L~~ 114 (334)
T PRK07194 111 RLQW 114 (334)
T ss_pred HHHC
Confidence 6543
No 12
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=27.30 E-value=46 Score=27.51 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=37.6
Q ss_pred CCCCCcccCccchhhhhhhhhHHHHHHHhhcCCCCCCh---HHHHHHHHHHHHHhhhhhc
Q 021608 50 NPVSGWQISEVDTYLIDSGKKFHAKLKRKLKDTNNFDK---DEFIGILNPYLQKIGEKVG 106 (310)
Q Consensus 50 ~p~sgw~ls~~D~~li~~~~~f~~~lk~kLk~~~~~sk---~~f~~lL~~fLe~l~~~~g 106 (310)
+++-+++---+|.|+.|++-.|. |||+++-+-|+ .-|-.-....-.+.++-+.
T Consensus 6 k~LfnfdPPAT~~EvrdAAlQfV----RKlSGtT~PS~~n~~AFe~AV~~iaA~areLLD 61 (88)
T COG5552 6 KELFNFDPPATPVEVRDAALQFV----RKLSGTTHPSAANAEAFEAAVAEIAATARELLD 61 (88)
T ss_pred HHHhCCCCCCCcHHHHHHHHHHH----HHhcCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778999999999999 99999876554 4455555555555555543
No 13
>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I (P18858 from SWISSPROT), and in Saccharomyces cerevisiae (Baker's yeast) (P04819 from SWISSPROT), this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In Vaccinia virus (P16272 from SWISSPROT) this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation []. ; GO: 0003677 DNA binding, 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 2CFM_A 3RR5_A 2HIX_A 2HIV_A 3L2P_A 1X9N_A 4EQ5_A 3GDE_A.
Probab=26.64 E-value=3.9e+02 Score=22.56 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=71.7
Q ss_pred HHHHhhcCCCCCChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHhcc-------ccchhhHHHHHHhhhhhh
Q 021608 74 KLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGF-------LMGRDVASLVLEACISLR 146 (310)
Q Consensus 74 ~lk~kLk~~~~~sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg~-------~~gr~va~lVl~~~~sL~ 146 (310)
++=.+|.+++ ++.+-+.++..|+.+..+.. . ...+.-+++.+.| .||.....-++..+..+.
T Consensus 8 ~l~~~l~~~~--~~~~k~~~l~~~~~~~~~~~----~-----~~~~~~~~~~l~P~~d~r~~~i~~~~L~k~~~~~~~~~ 76 (177)
T PF04675_consen 8 ELFEKLESTS--SRLEKIAILSNFFRSWREED----L-----GPDLYLLLRLLFPEYDGREYGIGEKLLAKAIAEALGLP 76 (177)
T ss_dssp HHHHHHHT-----HHHHHHHHHHHHHTSHCCG----H-----HCHHHHHHTHSSTTTCS---S--HHHHHHHHHHHHTS-
T ss_pred HHHHHHHhcc--CHHHHHHHHHHHHHHcccch----h-----hhHHHHHhcccccchhhhHhccchhHHHHHHHHHHcCC
Confidence 4446788888 88899999999999998874 1 2445556666644 567777788888888999
Q ss_pred hHHHHHHHHHcCCCCCCCchHHHHHHHhcCCCCeeeeeeccCCCCChHHHHHHHhhhc
Q 021608 147 IWELVETLIVHGLVDHSSYSNLVTRLATEKRSDLLCLCVKYSPDLGSSELLCILKYFL 204 (310)
Q Consensus 147 ~wd~v~aLi~~gLv~hs~yp~Lv~~Lve~~r~DLvClci~~a~DL~sSElL~iLkyFL 204 (310)
.|++-+.+-. +-.+++.+..+..++.....= -..++-.|+-..|+=+-
T Consensus 77 ~~~~~~~~~~-----~GD~g~~~~~~~~~~~~~~~~-----~~~lTi~~V~~~L~~la 124 (177)
T PF04675_consen 77 EKSIDESYKK-----VGDLGEVAEEVLQKRKSETSK-----PSPLTISEVNETLDELA 124 (177)
T ss_dssp HHHHHHHHHH-----HS-HHHHHHHHHHHHTTTS-------SS--BHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-----cCcHHHHHHHHHhhccccccC-----CCCCCHHHHHHHHHHHH
Confidence 9998885555 445677788887776643221 56777778877777663
No 14
>PF09817 DUF2352: Uncharacterized conserved protein (DUF2352); InterPro: IPR018630 The protein Zwilch is an essential component of the mitotic checkpoint, which prevents cells from prematurely exiting mitosis. It is required for the assembly of the dynein-dynactin, Mad2 complexes and spindly/CG15415 onto kinetochores [, , ]. Zwilch is a Component of the RZZ complex, which is composed of Rod, Zw10 and Zwilch.; PDB: 3IF8_A.
Probab=26.38 E-value=1.3e+02 Score=31.97 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=45.7
Q ss_pred HHHHHHHhhcCCCCCChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHhccccchhhHHHHHHhhhhhhhHHH
Q 021608 71 FHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISLRIWEL 150 (310)
Q Consensus 71 f~~~lk~kLk~~~~~sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg~~~gr~va~lVl~~~~sL~~wd~ 150 (310)
|..+|=-+|+.+. |-.+...+++-+++.+.+- -+-..+...-...+-.+|+.... ++++..+|++. ..
T Consensus 330 FtEqLW~ilk~c~--sy~dL~~~l~~v~~~l~~g-~i~p~i~~~N~s~la~LI~~~~~---~~~~~p~L~g~------~p 397 (589)
T PF09817_consen 330 FTEQLWEILKKCS--SYQDLVDCLTLVFQALKRG-KIQPWIHPGNKSRLAKLIRQSYH---GRLAMPSLSGL------EP 397 (589)
T ss_dssp HHHHHHHHHHT----SHHHHHHHHHHHHHHHHTT--------S----HHHHHHHHHHS---S--------TT------HH
T ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhC-CcCccccCCChhHHHHHHHHHhc---CCCcceecCCC------cH
Confidence 6667778888888 8999999999999999875 24443444446889999998843 26666777776 77
Q ss_pred HHHHHHcCC
Q 021608 151 VETLIVHGL 159 (310)
Q Consensus 151 v~aLi~~gL 159 (310)
++.|+|-|+
T Consensus 398 lemLlEIGl 406 (589)
T PF09817_consen 398 LEMLLEIGL 406 (589)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 788888885
No 15
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.13 E-value=95 Score=24.34 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=40.6
Q ss_pred hhhHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHhccccchhhHH
Q 021608 68 GKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVAS 136 (310)
Q Consensus 68 ~~~f~~~lk~kLk~~~~~sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg~~~gr~va~ 136 (310)
..+++.+|=..|-+.+.+++..|..-+..+++.+.+- .+.. |.+.+.+|.++||-++.
T Consensus 52 ~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~dl-~~D~----------P~a~~~la~~~a~~v~~ 109 (113)
T smart00544 52 YREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIEDL-ELDI----------PNAWRNLAEFVARLISD 109 (113)
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChhh-hccc----------ccHHHHHHHHHHHHHHc
Confidence 3456666667777777899999999999999988865 3332 33466667777666543
No 16
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=25.06 E-value=1.3e+02 Score=24.51 Aligned_cols=62 Identities=19% Similarity=0.440 Sum_probs=33.5
Q ss_pred HHHHHhhcCCCCCChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHhccccchhhHHHHHHh
Q 021608 73 AKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEA 141 (310)
Q Consensus 73 ~~lk~kLk~~~~~sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg~~~gr~va~lVl~~ 141 (310)
.++.+.....+++++++.-..+..|.+.+...-++..| +..|.+.++++ .+|.+-|..+++.
T Consensus 36 ~~i~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~~~~g----g~~~~~~lL~~---alg~~~a~~il~~ 97 (108)
T PF14842_consen 36 ERISREMAKLGSVSPEEVEEVLEEFYDEIRAQGGIVSG----GRDFARRLLEK---ALGEEKAKEILDR 97 (108)
T ss_dssp HHHHHHHHT-----HHHHHHHHHHHHHHHHHTT---S-----HHHHHHH-HHH---HS---HHHHH---
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHHHccccccC----hHHHHHHHHHH---HCCHHHHHHHHHH
Confidence 34557777888999999999999999977766555444 14677777655 3666666666553
No 17
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=24.64 E-value=78 Score=35.73 Aligned_cols=44 Identities=30% Similarity=0.539 Sum_probs=38.1
Q ss_pred cCccchhhhhhhhhHHHHHHHhhcC---CCCCChHHHHHHHHHHHHH
Q 021608 57 ISEVDTYLIDSGKKFHAKLKRKLKD---TNNFDKDEFIGILNPYLQK 100 (310)
Q Consensus 57 ls~~D~~li~~~~~f~~~lk~kLk~---~~~~sk~~f~~lL~~fLe~ 100 (310)
+-+.+--.|+.|+||++.|++-.++ .-.+|++++..+++.-+++
T Consensus 936 lR~~EqrkI~~akKfFe~L~~~~~nv~f~t~~~~~~~~~~i~~~l~~ 982 (985)
T COG3587 936 LRPGEQRKIDTAKKFFEALSKQGKNVEFKTQFSKDDLFSLINELLEK 982 (985)
T ss_pred CCchHHHhHHHHHHHHHHHHhhccceeehhhccHHHHHHHHHHHhhc
Confidence 5677788999999999999999988 6668999999999887764
No 18
>cd00583 MutH_Sau3AI MutH is a 28kD endonuclease involved in methyl-directed DNA mismatch repair in gram negative bacteria. MutH is both sequence-specific and methylation-specific, introducing a nick in the unmethylated strand of a hemi-methylated d(GATC) DNA duplex. MutH is homologous to the type II restriction endonuclease Sau3AI which also recognizes the d(GATC) sequence however, Sau3AI cleaves both strands regardless of their methylation state. The active form of MutH is monomeric while that of Sau3AI is homodimeric. In addition to MutH, MutS, involved in mismatch recognition, and MutL, involved in mediating the interactions between MutH and MutS, are essential in initiating mismatch repair in Escherichia coli.
Probab=23.29 E-value=65 Score=29.46 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=42.8
Q ss_pred CCeeeeeeccCCCCChHHHHHHHhhhcCCCchhhhhhhHHHHHHHHHHHHHHHH-------------hCCCccccc
Q 021608 178 SDLLCLCVKYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWESQALLAIEK-------------AGPCPEASF 240 (310)
Q Consensus 178 ~DLvClci~~a~DL~sSElL~iLkyFL~psk~ay~sm~~Vr~~W~~~A~lAI~~-------------A~pCp~A~~ 240 (310)
.-++++.+.+-.+....|..-.--.|..|+. .-+..+|+.|++-... |.. .++||+|+.
T Consensus 102 ~~~L~v~~~~~~~~~~~~~~i~~~~lw~~~~---~d~~~ik~dWe~i~~~-I~~G~~~~ls~~~~~~l~~rpK~an 173 (210)
T cd00583 102 KKILWIPYEGERGIPKADRIIGEPFLWEPSE---EDEKQLKNDWEEIMDY-IVLGKAEELSASHGEYLQLRPKGAN 173 (210)
T ss_pred hhEEEEEEECCCCCChHHeEECcEEEcCCCH---HHHHHHHHHHHHHHHH-HHcCCCCCCcccCCCEeeeccCccC
Confidence 6789999988777766665555555566664 3456899999987655 444 899999986
No 19
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=22.65 E-value=3.8e+02 Score=24.10 Aligned_cols=165 Identities=15% Similarity=0.197 Sum_probs=74.2
Q ss_pred CccchhhhhhhhhHHHHHHHhhcCCCCCChHH-HHHHHHHHHHHhhhhhccccccCC-CCCcchHHH-------------
Q 021608 58 SEVDTYLIDSGKKFHAKLKRKLKDTNNFDKDE-FIGILNPYLQKIGEKVGISTRINR-SDSGYTQGL------------- 122 (310)
Q Consensus 58 s~~D~~li~~~~~f~~~lk~kLk~~~~~sk~~-f~~lL~~fLe~l~~~~g~s~~~~~-s~~~~l~~l------------- 122 (310)
.++|..+...+-.....+.+.+. .++-...+ |...+..+++.+-+++|.....++ ..-..+|..
T Consensus 69 ~E~~~~vw~~~~~~l~~l~~~l~-~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~~~~~~~~ 147 (324)
T PF11838_consen 69 NETDYVVWSTALSNLSSLRNRLY-AEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLACGDPECVA 147 (324)
T ss_dssp T--SHHHHHHHHHHHHHHHHHHC-SC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHHT-HHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhccchhHHH
Confidence 45555555555555666666666 22223333 777777777777777765544110 001122222
Q ss_pred ---------HHHhcc---ccchhhHHHHHHhhhhh---hhHHHHHHHHHcCCCCCCCchHHHHHHHhcCCCCeeeeeecc
Q 021608 123 ---------IEKVGF---LMGRDVASLVLEACISL---RIWELVETLIVHGLVDHSSYSNLVTRLATEKRSDLLCLCVKY 187 (310)
Q Consensus 123 ---------I~kvg~---~~gr~va~lVl~~~~sL---~~wd~v~aLi~~gLv~hs~yp~Lv~~Lve~~r~DLvClci~~ 187 (310)
+..-.+ -++.++-..|+...+.- +.|+.|..+..+.-.. ...-.++..|.--+.+.++=-.+..
T Consensus 148 ~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~-~~k~~~l~aLa~~~d~~~~~~~l~~ 226 (324)
T PF11838_consen 148 EARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSP-EEKRRLLSALACSPDPELLKRLLDL 226 (324)
T ss_dssp HHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTH-HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCH-HHHHHHHHhhhccCCHHHHHHHHHH
Confidence 111112 56777777777776665 5588887777654311 0112233333333322222111222
Q ss_pred CC--C-CChHHHHHHHhhhcCCC-chhhhhhhHHHHHHHHH
Q 021608 188 SP--D-LGSSELLCILKYFLCPP-KDAYGSMGSVRMEWESQ 224 (310)
Q Consensus 188 a~--D-L~sSElL~iLkyFL~ps-k~ay~sm~~Vr~~W~~~ 224 (310)
+. + +++.++-.++..|-+.. ..---....+++.|+.-
T Consensus 227 ~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i 267 (324)
T PF11838_consen 227 LLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAI 267 (324)
T ss_dssp HHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHH
T ss_pred HcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Confidence 21 2 66777777777765233 22233334445555543
No 20
>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain. subfamily of choline kinases
Probab=22.19 E-value=1.8e+02 Score=25.30 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=50.2
Q ss_pred CceeeCCCCCCCC-CCcccCCCCCCccCCCCCCcccCccchhhhhhhhhHHHHHHHhhcCCCCCChHHHHHHHHHHHHHh
Q 021608 23 HPIILNPDNIFLN-LKPELEGASAASLVNPVSGWQISEVDTYLIDSGKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKI 101 (310)
Q Consensus 23 ~pivL~p~~~~~n-lk~~~e~~~ss~l~~p~sgw~ls~~D~~li~~~~~f~~~lk~kLk~~~~~sk~~f~~lL~~fLe~l 101 (310)
++-||++|+.-+| +--.- +.+......=+.+||.+.-.+-..|++.+|. ..+. .+.-.+.+-.++..|-+.+
T Consensus 118 ~~~vl~HgD~~~~N~~~~~-~~~~~~~~~~liDfq~~~~g~p~~Dl~~~l~----~~~~--~~~r~~~~~~ll~~Y~~~l 190 (196)
T smart00587 118 EFNVLNHGDLWANNIMFKY-DDEGKPEDVALIDFQLSHYGSPAEDLHYFLL----TSLS--VEIRREHFDELLKFYYETL 190 (196)
T ss_pred CceEEeeCCCCccceeecc-CCCCCccceEEEecccCCcCChHHHHHHHHH----hCCC--HHHHHHHHHHHHHHHHHHH
Confidence 6788999887663 21110 1111111124679999999999999999998 3221 1234577888999998888
Q ss_pred hhhhc
Q 021608 102 GEKVG 106 (310)
Q Consensus 102 ~~~~g 106 (310)
.+.++
T Consensus 191 ~~~L~ 195 (196)
T smart00587 191 VETLK 195 (196)
T ss_pred HHHHh
Confidence 77653
No 21
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=21.89 E-value=93 Score=27.77 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=35.6
Q ss_pred HHHHHcCCCCCCCchHHHHHHHhc---------CCCCeeeeeeccCCCCChHHHHHHHhhh
Q 021608 152 ETLIVHGLVDHSSYSNLVTRLATE---------KRSDLLCLCVKYSPDLGSSELLCILKYF 203 (310)
Q Consensus 152 ~aLi~~gLv~hs~yp~Lv~~Lve~---------~r~DLvClci~~a~DL~sSElL~iLkyF 203 (310)
..|++.|.++||.+..-+.++-.+ +..|||+.+=-+. -..++.|..||-|
T Consensus 66 ~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g~g~~DlvlfvG~~~--y~~~~~ls~lk~f 124 (162)
T TIGR00315 66 RALIEAGIESEEMNLHEITQFLADPSWEGFDGEGNYDLVLFLGIIY--YYLSQMLSSLKHF 124 (162)
T ss_pred cccccCCeecCCCCHHHHHHhccCchhhhccCCCCcCEEEEeCCcc--hHHHHHHHHHHhh
Confidence 345688888888777555565555 8999998864333 4567888888855
No 22
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=20.46 E-value=60 Score=32.47 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHhccccchhhHHHHHHhhhhhhhH--HHHHHHHHcCCCC
Q 021608 88 DEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISLRIW--ELVETLIVHGLVD 161 (310)
Q Consensus 88 ~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg~~~gr~va~lVl~~~~sL~~w--d~v~aLi~~gLv~ 161 (310)
++++.-+..-|+.+.+.- .=+..+-...++....-|||. ++|+++.-..++| +++++|.|+|+..
T Consensus 30 e~yi~ev~~~l~~l~~~~-------~~~~~~k~~ff~~~~~~~grt--ALvLsGGG~rG~~h~GVlkaL~e~gllp 96 (407)
T cd07232 30 EEYIDEVEACLKYLRESS-------QLDLEEKRRLFKRLSTNYGRT--ALCLSGGAAFAYYHFGVVKALLDADLLP 96 (407)
T ss_pred HHHHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHhcCCE--EEEECCcHHHHHHHHHHHHHHHhCCCCC
Confidence 444444444455554431 111345666777788888984 8999998888888 8999999999854
No 23
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.35 E-value=1e+02 Score=27.16 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=43.7
Q ss_pred hccccchhhHHHHHHhhhhhhhHHHHHHHHHcCCCCCCCchHHHHHHHhcCCCCeeee
Q 021608 126 VGFLMGRDVASLVLEACISLRIWELVETLIVHGLVDHSSYSNLVTRLATEKRSDLLCL 183 (310)
Q Consensus 126 vg~~~gr~va~lVl~~~~sL~~wd~v~aLi~~gLv~hs~yp~Lv~~Lve~~r~DLvCl 183 (310)
+-.+|||+..--|-+. -|+++..||+.-+=--|.|.|++.+|...++.|=+-.
T Consensus 58 ItshMPreML~dv~~~-----~~~il~~llelDI~HTS~~rdll~kl~kEGkl~pll~ 110 (126)
T PF09921_consen 58 ITSHMPREMLEDVWET-----LREILEQLLELDIRHTSQFRDLLKKLAKEGKLNPLLW 110 (126)
T ss_pred hHhcCCHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3568999988777654 5899999999998878999999999999999875443
Done!