Query 021608
Match_columns 310
No_of_seqs 16 out of 18
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 06:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hjl_A Flagellar motor switch 37.3 96 0.0033 29.0 7.6 73 73-153 40-115 (329)
2 2ld7_B Paired amphipathic heli 36.1 14 0.00048 27.9 1.5 48 68-132 11-58 (75)
3 1xkm_B Distinctin chain B; por 29.4 20 0.00068 22.8 1.1 20 63-83 5-24 (26)
4 2pco_A Latarcin-1, LTC-1; cont 25.3 29 0.001 22.3 1.4 15 68-82 11-25 (26)
5 1wlq_A Geminin; coiled-coil; 2 20.6 64 0.0022 25.5 2.8 52 258-309 31-82 (83)
6 2xdt_A Endoplasmic reticulum a 20.1 2.8E+02 0.0095 28.6 8.1 150 64-225 627-816 (897)
7 4fke_A Aminopeptidase N; zinc 19.4 3.7E+02 0.013 27.7 8.8 143 70-223 636-822 (909)
8 2aor_A DNA mismatch repair pro 15.5 35 0.0012 30.1 0.1 66 166-240 103-181 (223)
9 2rp4_A Transcription factor P5 15.3 84 0.0029 24.5 2.3 33 263-295 17-49 (76)
10 3h7u_A Aldo-keto reductase; st 15.1 3.1E+02 0.01 24.6 6.3 57 145-201 157-217 (335)
No 1
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=37.29 E-value=96 Score=29.01 Aligned_cols=73 Identities=18% Similarity=0.084 Sum_probs=53.6
Q ss_pred HHHHHhhcCCCCCChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHhccccchhhHHHHHHhhhh---hhhHH
Q 021608 73 AKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACIS---LRIWE 149 (310)
Q Consensus 73 ~~lk~kLk~~~~~sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg~~~gr~va~lVl~~~~s---L~~wd 149 (310)
.+|.+...+.++++.++.-..+..|.+.+...-++..| +.|.+.++++ .+|.+-|..+++.-.. -..||
T Consensus 40 ~~l~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~i~~g-----g~~~~~~L~~---aLg~~~A~~ll~~i~~~~~~~~~~ 111 (329)
T 3hjl_A 40 QKLFALAKDLESVPEEEIENIAEELLDEIKKAGIKIKK-----PEEFIENIKK---VIPPTLAEKFRGILELGDAEKILK 111 (329)
T ss_dssp HHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHTTCCCSC-----HHHHHHHHHH---HSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHH---hCCHHHHHHHHHHHhccccCCHHH
Confidence 45667778899999999999999999999888666555 3788887776 4666666666655433 23577
Q ss_pred HHHH
Q 021608 150 LVET 153 (310)
Q Consensus 150 ~v~a 153 (310)
-+..
T Consensus 112 ~L~~ 115 (329)
T 3hjl_A 112 EIEK 115 (329)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 7654
No 2
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=36.08 E-value=14 Score=27.92 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=35.5
Q ss_pred hhhHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHhccccch
Q 021608 68 GKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGR 132 (310)
Q Consensus 68 ~~~f~~~lk~kLk~~~~~sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg~~~gr 132 (310)
+--|+.+.|+.|.+.. .=.+|..+|+-|=+.+-.+ ..+++.|..+||+
T Consensus 11 e~~Ff~kVK~~l~~~~--~Y~eFLk~lnlf~q~~Id~---------------~eLv~~V~~~lg~ 58 (75)
T 2ld7_B 11 ESLFFDKVRKALRSAE--AYENFLRCLVIFNQEVISR---------------AELVQLVSPFLGK 58 (75)
T ss_dssp HHHHHHHHHHHHCSHH--HHHHHHHHHHHHHTTCSCH---------------HHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHcCCHH--HHHHHHHHHHHhhhcCcCH---------------HHHHHHHHHHHcc
Confidence 3458889999997644 6789999999997765333 3567777777764
No 3
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=29.38 E-value=20 Score=22.82 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=14.9
Q ss_pred hhhhhhhhHHHHHHHhhcCCC
Q 021608 63 YLIDSGKKFHAKLKRKLKDTN 83 (310)
Q Consensus 63 ~li~~~~~f~~~lk~kLk~~~ 83 (310)
-+|++- |+.++|.|||||+.
T Consensus 5 gliear-kyleqlhrklknck 24 (26)
T 1xkm_B 5 GLIEAR-KYLEQLHRKLKNCK 24 (26)
T ss_dssp HHHHHH-HHHHHHHHHHHHTC
T ss_pred HHHHHH-HHHHHHHHHHhcCC
Confidence 366654 45579999999986
No 4
>2pco_A Latarcin-1, LTC-1; continuous helix, toxin; NMR {Synthetic}
Probab=25.35 E-value=29 Score=22.31 Aligned_cols=15 Identities=47% Similarity=0.538 Sum_probs=12.7
Q ss_pred hhhHHHHHHHhhcCC
Q 021608 68 GKKFHAKLKRKLKDT 82 (310)
Q Consensus 68 ~~~f~~~lk~kLk~~ 82 (310)
-|+|..+||+|++|.
T Consensus 11 lKkf~~~lk~k~~~~ 25 (26)
T 2pco_A 11 LKKLRNALKKKLKGE 25 (26)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccC
Confidence 478999999999874
No 5
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.61 E-value=64 Score=25.51 Aligned_cols=52 Identities=21% Similarity=0.171 Sum_probs=32.7
Q ss_pred HHHhHhhcccccccccChhhHHHHHhHHHHHHHHHHhHhhhcchHHHHHhhc
Q 021608 258 QCLGLVLDENFSSLVLLPEFQEELRSIEGVVSTLASEARYCCSLANVVKRFG 309 (310)
Q Consensus 258 ~~lglVLDe~fSsLVL~~ef~EeLrsie~~V~sLaaea~~~~~~~~vve~l~ 309 (310)
++|+-.|+||=-=...--+..+|+.....+-+.|..-|+....|++|+++|-
T Consensus 31 ~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~L~ 82 (83)
T 1wlq_A 31 KALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERLS 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666665321122223344666677777788888888888888888874
No 6
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=20.08 E-value=2.8e+02 Score=28.63 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=89.7
Q ss_pred hhhhhhhHHHHHHHhhcCCCCCCh---HHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHH----------------
Q 021608 64 LIDSGKKFHAKLKRKLKDTNNFDK---DEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIE---------------- 124 (310)
Q Consensus 64 li~~~~~f~~~lk~kLk~~~~~sk---~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~---------------- 124 (310)
....+-.....|.+.+.+.+ .. +.|...+...++.+-+++|...+ ++-...++|..|=
T Consensus 627 ~w~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~lg~~~~-~~~~~~~lr~~~~~~ac~~g~~~c~~~a~ 703 (897)
T 2xdt_A 627 PVFQGLNELIPMYKLMEKRD--MNEVETQFKAFLIRLLRDLIDKQTWTDE-GSVSERMLRSQLLLLACVHNYQPCVQRAE 703 (897)
T ss_dssp HHHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHHHTCCSSCC-SCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCh--hhhHHHHHHHHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 33333344456777777666 34 56777777778888888887653 1111122332221
Q ss_pred ----H--hcc---ccchhhHHHHHHhhh-hhhhHHHHHHHHHcC-----------CCCCCCchHHHHHHHhcCCCCeeee
Q 021608 125 ----K--VGF---LMGRDVASLVLEACI-SLRIWELVETLIVHG-----------LVDHSSYSNLVTRLATEKRSDLLCL 183 (310)
Q Consensus 125 ----k--vg~---~~gr~va~lVl~~~~-sL~~wd~v~aLi~~g-----------Lv~hs~yp~Lv~~Lve~~r~DLvCl 183 (310)
+ -++ -++.++-+.|....+ +-+.|+-|..+..+- -+.....|+++.++.+--
T Consensus 704 ~~f~~~~~~~~~~~i~~~lr~~vy~~~~g~~~~~~~l~~~y~~~~~~~ek~~ll~aL~c~~~~~~l~~~L~~~------- 776 (897)
T 2xdt_A 704 GYFRKWKESNGNLSLPVDVTLAVFAVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQNKEKLQWLLDES------- 776 (897)
T ss_dssp HHHHHHHHTTTCSCCCHHHHHHHHHHHTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCHHHHHHHHHHH-------
T ss_pred HHHHHHhcCCCcCCCCcchhhhEEEEecCCHHHHHHHHHHHHccCCHHHHHHHHHHhccCCCHHHHHHHHHHH-------
Confidence 1 111 477888888887665 345788776654432 122334466665544320
Q ss_pred eeccCCCCChHHHHHHHhhhcCCCchhhhhhhHHHHHHHHHH
Q 021608 184 CVKYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWESQA 225 (310)
Q Consensus 184 ci~~a~DL~sSElL~iLkyFL~psk~ay~sm~~Vr~~W~~~A 225 (310)
+ ....+++.+...++..+.....+-.-++.-+++.|+.-.
T Consensus 777 -~-~~~~i~~qd~~~~~~~v~~n~~g~~~~~~~~~~n~~~i~ 816 (897)
T 2xdt_A 777 -F-KGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLV 816 (897)
T ss_dssp -H-HCSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHTHHHHH
T ss_pred -h-CCCCCcHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence 1 112489999999999998776666667788889998654
No 7
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=19.41 E-value=3.7e+02 Score=27.73 Aligned_cols=143 Identities=8% Similarity=0.033 Sum_probs=84.7
Q ss_pred hHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhhhhhccccc-cCCCCCc----chHHHH-----------------HHh-
Q 021608 70 KFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTR-INRSDSG----YTQGLI-----------------EKV- 126 (310)
Q Consensus 70 ~f~~~lk~kLk~~~~~sk~~f~~lL~~fLe~l~~~~g~s~~-~~~s~~~----~l~~lI-----------------~kv- 126 (310)
.-...|.+.+.++. ..+.|...++..++.+-+++|.-.. -.+.... ++|..+ +..
T Consensus 636 ~~l~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~lr~~~l~~ac~~g~~~c~~~a~~~f~ 713 (909)
T 4fke_A 636 SSLSYFSLMFDRSE--VYGPMKKYLRKQVEPLFQHFETLTKNWTERPENLMDQYSEINAISTACSNGLPQCENLAKTLFD 713 (909)
T ss_dssp HHHHHHHHHHTTST--THHHHHHHHHHHHHHHHHHHHHHTTTTTSCCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCch--HHHHHHHHHHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33455677777766 5667777777777777776654221 1111112 222211 111
Q ss_pred -------ccccchhhHHHHHHhhhh---hhhHHHHHHHHHcC-----------CCCCCCchHHHHHHHhcCCCCeeeeee
Q 021608 127 -------GFLMGRDVASLVLEACIS---LRIWELVETLIVHG-----------LVDHSSYSNLVTRLATEKRSDLLCLCV 185 (310)
Q Consensus 127 -------g~~~gr~va~lVl~~~~s---L~~wd~v~aLi~~g-----------Lv~hs~yp~Lv~~Lve~~r~DLvClci 185 (310)
+.-++.++-+.|....+. -+.|+-+.....+- -+..+..|+++.++.+--
T Consensus 714 ~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL~~~~d~~~l~~~L~~~--------- 784 (909)
T 4fke_A 714 QWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALACSNEVWLLNRYLGYT--------- 784 (909)
T ss_dssp HHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHHHTTCCCHHHHHHHHHHT---------
T ss_pred HHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHHhCCCCCHHHHHHHHHHH---------
Confidence 123667788888766553 56788776554432 123556677887776532
Q ss_pred ccCCCCChHHHHHHHhhhcCCCchhhhhhhHHHHHHHH
Q 021608 186 KYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWES 223 (310)
Q Consensus 186 ~~a~DL~sSElL~iLkyFL~psk~ay~sm~~Vr~~W~~ 223 (310)
....-+++.+...++..+.+.+....-++.-+++.|+.
T Consensus 785 l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~ 822 (909)
T 4fke_A 785 LNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKK 822 (909)
T ss_dssp TCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTT
T ss_pred hCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 12223789999999999887776666666778888864
No 8
>2aor_A DNA mismatch repair protein MUTH; GATC recognition, hydrolase/DNA complex; HET: DNA 6MA; 2.00A {Haemophilus influenzae} PDB: 2aoq_A*
Probab=15.47 E-value=35 Score=30.14 Aligned_cols=66 Identities=20% Similarity=0.198 Sum_probs=45.8
Q ss_pred hHHHHHHHhcCCCCeeeeeeccCCCCChHHHHHHHhhhcCCCchhhhhhhHHHHHHHHHHHHHHHH-------------h
Q 021608 166 SNLVTRLATEKRSDLLCLCVKYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWESQALLAIEK-------------A 232 (310)
Q Consensus 166 p~Lv~~Lve~~r~DLvClci~~a~DL~sSElL~iLkyFL~psk~ay~sm~~Vr~~W~~~A~lAI~~-------------A 232 (310)
|.+-.++ .-++++.+.+-.|+...|.--.-=.|.+|+.+- +..+|+-|++-... |.. .
T Consensus 103 S~~~~K~-----~~~L~v~~~~~~~~~~~~~~i~~~~lw~~~~~d---~~~ik~DWe~i~~~-I~~G~~~~is~~~g~~l 173 (223)
T 2aor_A 103 SHVRHKL-----SCVLWMPIEGSRHIPLRERHIGAPIFWKPTAEQ---ERQLKQDWEELMDL-IVLGKLDQITARIGEVM 173 (223)
T ss_dssp CHHHHHH-----SSEEEEEEECCTTSCGGGCBBCCCEEECCCHHH---HHHHHHHHHHHHHH-HHTTCGGGCCTTCCSSE
T ss_pred hHHHHHH-----hhEEEEEEecCCCCChhhcEEccEEEeCCCHHH---HHHHHHHHHHHHHH-HHcCCcCCcccCCCcEE
Confidence 4455666 269999998888877666543333445666442 67899999987755 444 8
Q ss_pred CCCccccc
Q 021608 233 GPCPEASF 240 (310)
Q Consensus 233 ~pCp~A~~ 240 (310)
+.||+|+.
T Consensus 174 ~~rpKa~n 181 (223)
T 2aor_A 174 QLRPKGAN 181 (223)
T ss_dssp EEEECSSS
T ss_pred EECCCccC
Confidence 89999874
No 9
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=15.31 E-value=84 Score=24.55 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=20.2
Q ss_pred hhcccccccccChhhHHHHHhHHHHHHHHHHhH
Q 021608 263 VLDENFSSLVLLPEFQEELRSIEGVVSTLASEA 295 (310)
Q Consensus 263 VLDe~fSsLVL~~ef~EeLrsie~~V~sLaaea 295 (310)
-+|+.|-=.+=-|.=-==|+|||||.+.-|++-
T Consensus 17 t~dGdYrL~itcpkKe~LLqSIEgmik~aA~~v 49 (76)
T 2rp4_A 17 TPDGDYRLAITCPNKEWLLQSIEGMIKEAAAEV 49 (76)
T ss_dssp CTTTBEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCceEEEEEeCcHHHHHHHHHHHHHHHHHHH
Confidence 355555433323332224799999999988764
No 10
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=15.05 E-value=3.1e+02 Score=24.64 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHcCCCCC----CCchHHHHHHHhcCCCCeeeeeeccCCCCChHHHHHHHh
Q 021608 145 LRIWELVETLIVHGLVDH----SSYSNLVTRLATEKRSDLLCLCVKYSPDLGSSELLCILK 201 (310)
Q Consensus 145 L~~wd~v~aLi~~gLv~h----s~yp~Lv~~Lve~~r~DLvClci~~a~DL~sSElL~iLk 201 (310)
.+.|+.++.|.+.|.|+| +-.++-+..+.+..+.+..+.-+.+-.-.+..+++...|
T Consensus 157 ~e~~~aL~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~Q~~~~~~~~~~~l~~~~~ 217 (335)
T 3h7u_A 157 PSTWKAMEALYDSGKARAIGVSNFSTKKLADLLELARVPPAVNQVECHPSWRQTKLQEFCK 217 (335)
T ss_dssp HHHHHHHHHHHHTTSBSSEEEESCCHHHHHHHHHHCSSCCSEEEEECBTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHhCCCCeEEEecccccccCCHHHHHHHH
Confidence 478999999999999986 334678888888777766665555544445567776655
Done!