Query         021608
Match_columns 310
No_of_seqs    16 out of 18
Neff          2.9 
Searched_HMMs 13730
Date          Mon Mar 25 06:38:25 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021608.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021608hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2f05a1 a.59.1.1 (A:1-85) Sin3  56.6     6.6 0.00048   28.0   4.4   59   68-132    10-68  (85)
  2 d1st6a6 a.24.9.1 (A:647-718) V  46.0     4.3 0.00031   29.3   1.8   44  185-229    19-64  (72)
  3 d1k0ma1 a.45.1.1 (A:92-240) Ch  30.9      95  0.0069   22.9   7.7  107   57-169     5-116 (149)
  4 d1s5qb_ a.59.1.1 (B:) Sin3A {M  23.6      51  0.0037   23.3   4.6   60   68-131    13-73  (89)
  5 d1hfel1 c.96.1.1 (L:87-398) Fe  23.2     9.7 0.00071   32.7   0.5  163   72-262     2-183 (312)
  6 d1x9na1 a.235.1.1 (A:262-533)   23.0      86  0.0063   26.1   6.7  136   47-207    12-154 (272)
  7 d2fbka1 a.4.5.28 (A:8-179) Tra  21.6      36  0.0026   25.9   3.6   57  121-177    38-108 (172)
  8 d1h67a_ a.40.1.1 (A:) Calponin  20.6      25  0.0019   25.9   2.4   28  251-283     2-30  (108)
  9 d3bzka1 a.60.2.6 (A:474-563) T  20.4      66  0.0048   22.8   4.7   52   84-142     4-55  (90)
 10 d2gena2 a.121.1.1 (A:76-193) P  20.1 1.2E+02  0.0088   20.3   7.3   74   86-173     3-80  (118)

No 1  
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=56.60  E-value=6.6  Score=28.02  Aligned_cols=59  Identities=19%  Similarity=0.213  Sum_probs=43.4

Q ss_pred             hhhHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHhccccch
Q 021608           68 GKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGR  132 (310)
Q Consensus        68 ~~~f~~~lk~kLk~~~~~sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg~~~gr  132 (310)
                      |-.|..++|.++.+.+ -.-.+|+.+++.|-+...+..|.+.+     ......+++.|+.+|+.
T Consensus        10 A~~yl~kVK~rf~~~p-~~Y~~FL~il~~f~~~~i~~~~~~~~-----~~~~~ev~~~V~~Lf~~   68 (85)
T d2f05a1          10 AISYVNKIKTRFLDHP-EIYRSFLEILHTYQKEQLHTKGRPFR-----GMSEEEVFTEVANLFRG   68 (85)
T ss_dssp             HHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHHHHSSSSSSSSC-----CCCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHccCH-HHHHHHHHHHHHHHHhhccccccccc-----cCCHHHHHHHHHHHHcc
Confidence            4567789999998765 36788999999998877666665544     45566778888777753


No 2  
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=46.02  E-value=4.3  Score=29.30  Aligned_cols=44  Identities=18%  Similarity=0.377  Sum_probs=31.9

Q ss_pred             eccCCCCChHHHHHHHhhhc-CCC-chhhhhhhHHHHHHHHHHHHHH
Q 021608          185 VKYSPDLGSSELLCILKYFL-CPP-KDAYGSMGSVRMEWESQALLAI  229 (310)
Q Consensus       185 i~~a~DL~sSElL~iLkyFL-~ps-k~ay~sm~~Vr~~W~~~A~lAI  229 (310)
                      .+|...|+| |+..+-|.+. -|+ |-++.-|..+|+.|++++.+-.
T Consensus        19 a~qle~L~P-QVi~AariL~~~P~sK~a~En~e~~~~~W~~~v~~l~   64 (72)
T d1st6a6          19 VKSARELTP-QVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMT   64 (72)
T ss_dssp             HHHHHHHHH-HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCH-HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777 4555555444 455 9999999999999999996543


No 3  
>d1k0ma1 a.45.1.1 (A:92-240) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.91  E-value=95  Score=22.85  Aligned_cols=107  Identities=17%  Similarity=0.183  Sum_probs=60.3

Q ss_pred             cCccchhhhhhhhhHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHh--c-cccchh
Q 021608           57 ISEVDTYLIDSGKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKV--G-FLMGRD  133 (310)
Q Consensus        57 ls~~D~~li~~~~~f~~~lk~kLk~~~~~sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kv--g-~~~gr~  133 (310)
                      ++|.||+..+++..++.+..+-+++...-..+.+...+..-|+++-+.+.....   .....+..+=+.+  | +++|.+
T Consensus         5 L~p~~pE~~~i~~~l~~~f~~~l~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~---~~~~~l~~~~~~l~~~~fl~Gd~   81 (149)
T d1k0ma1           5 LAALNPESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLP---EGVDETSAEDEGVSQRKFLDGNE   81 (149)
T ss_dssp             CSCSSGGGGTTTTTHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHSCCC---CCTTCCHHHHHSCCCCSSSSSSS
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHhCcChhhhHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHhhcCCcccCCCC
Confidence            677889999999999988888888887555566666666666655443322111   0011222222221  2 455665


Q ss_pred             hHHHHHHhhhh--hhhHHHHHHHHHcCCCCCCCchHHH
Q 021608          134 VASLVLEACIS--LRIWELVETLIVHGLVDHSSYSNLV  169 (310)
Q Consensus       134 va~lVl~~~~s--L~~wd~v~aLi~~gLv~hs~yp~Lv  169 (310)
                      +.  .+++++.  |.-++++.. .-+|.-....||+|-
T Consensus        82 ~t--~aDi~l~p~l~r~~~~~~-~~~~~~~~~~~p~l~  116 (149)
T d1k0ma1          82 LT--LADCNLLPKLHIVQVVCK-KYRGFTIPEAFRGVH  116 (149)
T ss_dssp             CC--HHHHHHHHHHHHHHHHHH-HHHCCCCCTTCHHHH
T ss_pred             Cc--HHHHHHHHHHHHHHhhhc-ccccchhhhcChHHH
Confidence            43  3444433  455555543 224555556788764


No 4  
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.63  E-value=51  Score=23.33  Aligned_cols=60  Identities=17%  Similarity=0.227  Sum_probs=38.8

Q ss_pred             hhhHHHHHHHhhcCCCCCChHHHHHHHHHHHHH-hhhhhccccccCCCCCcchHHHHHHhccccc
Q 021608           68 GKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQK-IGEKVGISTRINRSDSGYTQGLIEKVGFLMG  131 (310)
Q Consensus        68 ~~~f~~~lk~kLk~~~~~sk~~f~~lL~~fLe~-l~~~~g~s~~~~~s~~~~l~~lI~kvg~~~g  131 (310)
                      |-.|..++|+.+.+.++ .-.+|+.+|+.|=+. +..+.....+   ........+++.|..+|+
T Consensus        13 A~~yl~kVK~~f~d~p~-~Y~~FL~il~~f~~~~~~~~~~~~~~---~~~~~~~~v~~rV~~Lf~   73 (89)
T d1s5qb_          13 AINYVNKIKNRFQGQPD-IYKAFLEILHTYQKEQRNAKEAGGNY---TPALTEQEVYAQVARLFK   73 (89)
T ss_dssp             HHHHHHHHHHHTTTCHH-HHHHHHHHHHHHHHHHHHHHHSCSCC---CCSCCHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHccChH-HHHHHHHHHHHHHHhhhccccccccc---cccccHHHHHHHHHHHHc
Confidence            45577899999988763 678999999999654 3333222222   113445666777766664


No 5  
>d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit, C-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=23.23  E-value=9.7  Score=32.73  Aligned_cols=163  Identities=16%  Similarity=0.142  Sum_probs=94.0

Q ss_pred             HHHHHHhhcCCCCCChHHHHHHHHH-HHHHhhhhhccccccCCCCCcchHHHHHHhccccchhhHHHHHHhhhhhhhHHH
Q 021608           72 HAKLKRKLKDTNNFDKDEFIGILNP-YLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEACISLRIWEL  150 (310)
Q Consensus        72 ~~~lk~kLk~~~~~sk~~f~~lL~~-fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg~~~gr~va~lVl~~~~sL~~wd~  150 (310)
                      ..++++++++.+.    +++.++.| +..++++..|++.+.  ...+-+..++|++||..=-|++ +-.+-++--+--|.
T Consensus         2 i~~v~~~~~~~~~----~vva~iAPs~~~~~~~~fg~~~~~--~~~~kl~~~Lk~lGF~~V~d~~-~gad~~~~e~a~E~   74 (312)
T d1hfel1           2 VPEVEKKLKDGKV----KCIAMPAPAVRYALGDAFGMPVGS--VTTGKMLAALQKLGFAHCWDTE-FTADVTIWEEGSEF   74 (312)
T ss_dssp             HHHHHHHHHCTTC----EEEEEECGGGGGTGGGGGTCCTTC--CCHHHHHHHHHHHTCSEECCHH-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhCCCC----EEEEEECCHHHHHHHHHhCCCccc--cCHHHHHHHHHHcCCCEEEEch-HHHHHHHHHHHHHH
Confidence            4567788876641    34555554 556789999998882  2235677889999996433332 11111222223345


Q ss_pred             HHHHHHcC-----CCCCCCchHHHHHHHhcCCCCeeeeeeccCCCCChHHHHHHHhhhcCCCchhhhhhhHHHHHHHHHH
Q 021608          151 VETLIVHG-----LVDHSSYSNLVTRLATEKRSDLLCLCVKYSPDLGSSELLCILKYFLCPPKDAYGSMGSVRMEWESQA  225 (310)
Q Consensus       151 v~aLi~~g-----Lv~hs~yp~Lv~~Lve~~r~DLvClci~~a~DL~sSElL~iLkyFL~psk~ay~sm~~Vr~~W~~~A  225 (310)
                      ++.+...+     ++++.| |-.| +++|+.-++|+    .|.+...|...+.. ++.              |..|-++.
T Consensus        75 ~~r~~~~~~~~~P~isS~C-Pg~V-~~iEk~~P~Li----p~ls~v~SP~~i~g-~l~--------------K~~~~~~~  133 (312)
T d1hfel1          75 VERLTKKSDMPLPQFTSCC-PGWQ-KYAETYYPELL----PHFSTCKSPIGMNG-ALA--------------KTYGAERM  133 (312)
T ss_dssp             HHHHTTSSCSCSSEECCCC-HHHH-HHHHHHCGGGG----GGBCSBCCHHHHHH-HHH--------------TTHHHHHH
T ss_pred             HHHHhccCCCCCCeEeeCC-HHHH-HHHHHHChhhh----ccccccccHHHHHH-HHH--------------HHHHHHhc
Confidence            55555454     467778 8877 57888888863    67777777765543 222              22222111


Q ss_pred             HHHHHH-----hCCCcc----ccc--c--ccccccCCCcChHHHHHHHhH
Q 021608          226 LLAIEK-----AGPCPE----ASF--G--LGLKACDWVPKLEVIVQCLGL  262 (310)
Q Consensus       226 ~lAI~~-----A~pCp~----A~~--~--lgle~Cd~VPsl~~V~~~lgl  262 (310)
                      -..-+.     .+||.-    |..  +  -|....|.|=+++++.+||.-
T Consensus       134 ~~~~~~i~~V~I~PC~aKK~Ea~r~e~~~~~~~dVD~VLT~~El~~ll~~  183 (312)
T d1hfel1         134 KYDPKQVYTVSIMPCIAKKYEGLRPELKSSGMRDIDATLTTRELAYMIKK  183 (312)
T ss_dssp             TCCGGGEEEEEEESCSHHHHHHTCTTCCTTSSCSCCEEEEHHHHHHHHHH
T ss_pred             CCCcCcEEEEEEEcchhhhhHhcChhhccCCCCCceEEEEHHHHHHHHHH
Confidence            000011     778875    332  1  223346888899999998853


No 6  
>d1x9na1 a.235.1.1 (A:262-533) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.00  E-value=86  Score=26.14  Aligned_cols=136  Identities=10%  Similarity=0.080  Sum_probs=79.9

Q ss_pred             ccCCCCCCcccCccchhhhhhhhhHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHh
Q 021608           47 SLVNPVSGWQISEVDTYLIDSGKKFHAKLKRKLKDTNNFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKV  126 (310)
Q Consensus        47 ~l~~p~sgw~ls~~D~~li~~~~~f~~~lk~kLk~~~~~sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kv  126 (310)
                      +-|..-.-|.-++.=| ..+.++-|     .++..|+  ++-+-+.+|..|+.++.+.-+-..      ...++-++.++
T Consensus        12 ~~p~~~~~w~~~~~vp-f~~la~~f-----~~ie~ts--~rl~k~~iL~~~f~~~~~~~p~dl------~~~vyL~~g~l   77 (272)
T d1x9na1          12 YHPVEDACWKPGQKVP-YLAVARTF-----EKIEEVS--ARLRMVETLSNLLRSVVALSPPDL------LPVLYLSLNHL   77 (272)
T ss_dssp             CCHHHHCCSCTTSCCB-HHHHHHHH-----HHHHTCC--CHHHHHHHHHHHHHHHHHHCGGGH------HHHHHHHHTCS
T ss_pred             CCcchhhcccCCCCcC-HHHHHHHH-----HHHHHhc--CHHHHHHHHHHHHHHHHhcChhHH------HHHHHHHhCCc
Confidence            3334445687665544 45555555     5888999  999999999999999866511100      13344455555


Q ss_pred             cc-------ccchhhHHHHHHhhhhhhhHHHHHHHHHcCCCCCCCchHHHHHHHhcCCCCeeeeeeccCCCCChHHHHHH
Q 021608          127 GF-------LMGRDVASLVLEACISLRIWELVETLIVHGLVDHSSYSNLVTRLATEKRSDLLCLCVKYSPDLGSSELLCI  199 (310)
Q Consensus       127 g~-------~~gr~va~lVl~~~~sL~~wd~v~aLi~~gLv~hs~yp~Lv~~Lve~~r~DLvClci~~a~DL~sSElL~i  199 (310)
                      +|       .||..+.--.+..+.+...|++-+.+-+.|=+     .+.+..+..+++.     + ..-..|+-.|+...
T Consensus        78 ~P~~e~~elgige~~l~kai~e~~G~~~~~i~~~~~~~GDl-----G~va~~~~~~~~~-----~-~~~~~LTv~~V~~~  146 (272)
T d1x9na1          78 GPPQQGLELGVGDGVLLKAVAQATGRQLESVRAEAAEKGDV-----GLVAENSRSTQRL-----M-LPPPPLTASGVFSK  146 (272)
T ss_dssp             SCGGGCCCCCCCHHHHHHHHHHHHTCCHHHHHHHHHHHTCH-----HHHTCC--------------CCCSCCBHHHHHHH
T ss_pred             CcchhchhcccCHHHHHHHHHHHHCcCHHHHHHHHHHcCCH-----HHHHHHHhhcccc-----c-cCCCCCCHHHHHHH
Confidence            44       57777777777777888888887666554421     1111111111111     1 12346777888887


Q ss_pred             HhhhcCCC
Q 021608          200 LKYFLCPP  207 (310)
Q Consensus       200 LkyFL~ps  207 (310)
                      |+=+-..+
T Consensus       147 L~~IA~~s  154 (272)
T d1x9na1         147 FRDIARLT  154 (272)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHhh
Confidence            77665544


No 7  
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=21.61  E-value=36  Score=25.86  Aligned_cols=57  Identities=25%  Similarity=0.360  Sum_probs=46.0

Q ss_pred             HHHHHhccccchhhHHHHHHhhhhhhhHHHHHHHHHcC----C----------CCCCCchHHHHHHHhcCC
Q 021608          121 GLIEKVGFLMGRDVASLVLEACISLRIWELVETLIVHG----L----------VDHSSYSNLVTRLATEKR  177 (310)
Q Consensus       121 ~lI~kvg~~~gr~va~lVl~~~~sL~~wd~v~aLi~~g----L----------v~hs~yp~Lv~~Lve~~r  177 (310)
                      .+|..+...|++.+.......-++...|.++.+|..+|    +          ++.+.-..+|++|++++-
T Consensus        38 ~ll~r~~~~l~~~~~~~l~~~gLt~~q~~vL~~L~~~~~~~~lt~~eLa~~l~i~~~tvsr~l~~Le~~Gl  108 (172)
T d2fbka1          38 LLLERLHAALGREIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGL  108 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCcCHHHHHHHHCcCHhHHHHHHHHHHhCCC
Confidence            45788888899988887777789999999999998775    2          456666788999998873


No 8  
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.56  E-value=25  Score=25.88  Aligned_cols=28  Identities=14%  Similarity=0.265  Sum_probs=22.4

Q ss_pred             cChH-HHHHHHhHhhcccccccccChhhHHHHHh
Q 021608          251 PKLE-VIVQCLGLVLDENFSSLVLLPEFQEELRS  283 (310)
Q Consensus       251 Psl~-~V~~~lglVLDe~fSsLVL~~ef~EeLrs  283 (310)
                      |..+ ++..|++-++++.+.     ++|++.||.
T Consensus         2 p~~e~e~~~Wie~~~~~~~~-----~~~~~~L~d   30 (108)
T d1h67a_           2 PQTERQLRVWIEGATGRRIG-----DNFMDGLKD   30 (108)
T ss_dssp             CCSSHHHHHHHHHHHSCCCC-----SCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCc-----hHHHHHHcC
Confidence            4444 899999999999884     688887764


No 9  
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.43  E-value=66  Score=22.78  Aligned_cols=52  Identities=10%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             CCChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHhccccchhhHHHHHHhh
Q 021608           84 NFDKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVGFLMGRDVASLVLEAC  142 (310)
Q Consensus        84 ~~sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg~~~gr~va~lVl~~~  142 (310)
                      |.+.+++..-|..-+++....+|+..-.+      ....+.++ |+||...|..+++.=
T Consensus         4 dv~~~~L~~~l~~~~~~~v~~vgidiN~A------s~~~L~~l-pGig~~~A~~Iv~~R   55 (90)
T d3bzka1           4 DVSQLKLARSLDAVVEDCVNAVGVDVNTA------SAALLARI-SGLNSTLAQNIVAHR   55 (90)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHCEETTTC------CHHHHTTS-TTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhhhcceehhhC------CHHHHhHC-CCCCHHHHHHHHHHH
Confidence            46777888888888888888888766522      23446666 899999998887653


No 10 
>d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.06  E-value=1.2e+02  Score=20.31  Aligned_cols=74  Identities=9%  Similarity=0.151  Sum_probs=47.1

Q ss_pred             ChHHHHHHHHHHHHHhhhhhccccccCCCCCcchHHHHHHhc----cccchhhHHHHHHhhhhhhhHHHHHHHHHcCCCC
Q 021608           86 DKDEFIGILNPYLQKIGEKVGISTRINRSDSGYTQGLIEKVG----FLMGRDVASLVLEACISLRIWELVETLIVHGLVD  161 (310)
Q Consensus        86 sk~~f~~lL~~fLe~l~~~~g~s~~~~~s~~~~l~~lI~kvg----~~~gr~va~lVl~~~~sL~~wd~v~aLi~~gLv~  161 (310)
                      .+++++.++..|++-+.+.           +...|.++..-.    +-....+...  .....-.+-++++.-++.|.++
T Consensus         3 ~~e~lr~~v~~~~~~v~~~-----------p~~~r~l~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~i~~g~~~G~~r   69 (118)
T d2gena2           3 AEETVRLLVTSYIDWVVAN-----------PDWARFILHSRGRVEAGELGERLRAD--NQAHFARIHAALAGYRAEGLFR   69 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHHSTTHHHHHHH--HHHHHHHHHHHHHHHHHTTCBC
T ss_pred             HHHHHHHHHHHHHHHHHhC-----------hHHHHHHHHHhhcccCccHHHHHHHH--HHHHHHHHHHHHHHHHHcCCCC
Confidence            3688999999999887765           344554443222    2233333322  2344445667888888999997


Q ss_pred             CCCchHHHHHHH
Q 021608          162 HSSYSNLVTRLA  173 (310)
Q Consensus       162 hs~yp~Lv~~Lv  173 (310)
                       +..|+++..++
T Consensus        70 -~~~~~~~~~~i   80 (118)
T d2gena2          70 -EMPDDCFASVV   80 (118)
T ss_dssp             -CCCHHHHHHHH
T ss_pred             -ccCHHHHHHHH
Confidence             67789888765


Done!