BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021609
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZBT|A Chain A, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
pdb|2ZBT|B Chain B, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
pdb|2ZBT|C Chain C, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
pdb|2ZBT|D Chain D, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Thermus Thermophilus Hb8
Length = 297
Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/290 (63%), Positives = 221/290 (76%), Gaps = 1/290 (0%)
Query: 20 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMS 79
+K F +K G A+M +GGVIMDV TPEQA +AEEAGA AVMALERVPADIR+QGGVARMS
Sbjct: 6 EKGTFQIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMS 65
Query: 80 DPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFR 139
DP++IKEI +V+IPVMAK RIGHFVEA ILEAIG+D++DESEVLTPADEE+HI+K F+
Sbjct: 66 DPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFK 125
Query: 140 IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199
+PFVCG RNLGEALRRI EGAAMIRTKGEAGTGN++EAVRH R++ +IR ++++ +DE+
Sbjct: 126 VPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDEL 185
Query: 200 FTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXX 259
+AK+I AP++LV GRLPVV+F +MM LG D
Sbjct: 186 MAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSG 245
Query: 260 DPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK-VERFASR 308
DP KRA+AIVRAV HY+DPEVLAEVS LGE MVG+NL K ER A R
Sbjct: 246 DPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEERLAKR 295
>pdb|2NV1|A Chain A, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|B Chain B, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|C Chain C, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|D Chain D, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|E Chain E, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|F Chain F, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
Length = 305
Score = 331 bits (849), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 158/274 (57%), Positives = 209/274 (76%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIK 85
VK G+A+M +GGVIMDV+ EQA++AEEAGA AVMALERVPADIR+ GGVARM+DP +++
Sbjct: 12 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVE 71
Query: 86 EIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCG 145
E+ +V+IPVMAKARIGH VEA++LEA+G+DY+DESEVLTPADEE H+NK+ + +PFVCG
Sbjct: 72 EVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCG 131
Query: 146 CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205
CR+LGEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V +R + M +DE+ T AK
Sbjct: 132 CRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKN 191
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRA 265
+ APY+L++Q K+ G+LPVV+F +MMQLG D +P K A
Sbjct: 192 LGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFA 251
Query: 266 QAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 299
+AIV A TH++D +++AE+S LG AM G+ +S+
Sbjct: 252 KAIVEATTHFTDYKLIAELSKELGTAMKGIEISN 285
>pdb|2NV2|A Chain A, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|C Chain C, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|E Chain E, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|G Chain G, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|I Chain I, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|K Chain K, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|M Chain M, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|O Chain O, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|Q Chain Q, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|S Chain S, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|U Chain U, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|W Chain W, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 294
Score = 331 bits (849), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 158/274 (57%), Positives = 209/274 (76%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIK 85
VK G+A+M +GGVIMDV+ EQA++AEEAGA AVMALERVPADIR+ GGVARM+DP +++
Sbjct: 9 VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVE 68
Query: 86 EIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCG 145
E+ +V+IPVMAKARIGH VEA++LEA+G+DY+DESEVLTPADEE H+NK+ + +PFVCG
Sbjct: 69 EVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCG 128
Query: 146 CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205
CR+LGEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V +R + M +DE+ T AK
Sbjct: 129 CRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKN 188
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRA 265
+ APY+L++Q K+ G+LPVV+F +MMQLG D +P K A
Sbjct: 189 LGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFA 248
Query: 266 QAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 299
+AIV A TH++D +++AE+S LG AM G+ +S+
Sbjct: 249 KAIVEATTHFTDYKLIAELSKELGTAMKGIEISN 282
>pdb|2ISS|A Chain A, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|B Chain B, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|C Chain C, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
Length = 313
Score = 325 bits (834), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 158/289 (54%), Positives = 211/289 (73%)
Query: 14 GAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQG 73
G+ E KK + +K G A+M +GGVIMDV + EQA++AEEAGA AVMALERVPADIR +G
Sbjct: 18 GSHMEIKKGTWIIKKGFAEMFKGGVIMDVTSAEQAKIAEEAGAVAVMALERVPADIRKEG 77
Query: 74 GVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHI 133
GVARM+ I+EI ++V+IPVMAK RIGH EA+ILE +G+D++DESEVLTPAD+ HI
Sbjct: 78 GVARMASIAKIREIMEAVSIPVMAKVRIGHIAEAKILEELGVDFIDESEVLTPADDRFHI 137
Query: 134 NKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRN 193
NKH F++PFVCG R+LGEALRRI EGAAMIRTKGEAGTGN++EAV+H+R VM I+ +
Sbjct: 138 NKHEFKVPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVKHMRRVMEQIKQVTK 197
Query: 194 MDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXX 253
M+D+E+ + K+I AP +L+ + K+LGRLPVV+F +MM LG D
Sbjct: 198 MEDEELVAYGKEIGAPVELLREVKRLGRLPVVNFAAGGVATPADAALMMMLGADGVFVGS 257
Query: 254 XXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV 302
DP K A+A+V AVT++ +P +L ++S +GE M GL++ + +V
Sbjct: 258 GIFKSKDPRKMAKAMVLAVTYWDNPRILLKISEDIGEPMRGLDVEELEV 306
>pdb|1ZNN|A Chain A, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|B Chain B, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|C Chain C, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|D Chain D, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|E Chain E, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|F Chain F, Structure Of The Synthase Subunit Of Plp Synthase
Length = 325
Score = 324 bits (831), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 161/282 (57%), Positives = 209/282 (74%), Gaps = 4/282 (1%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIK 85
VK G+A+M +GGVIMDVV EQA++AE AGA AVMALERVPADIR+ GGVARM+DP +I+
Sbjct: 40 VKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIE 99
Query: 86 EIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCG 145
E+ +V+IPVMAK RIGH+VEA++LEA+G+DY+DESEVLTPADEE HI+K F +PFVCG
Sbjct: 100 EVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCG 159
Query: 146 CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205
CR+LGEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V IR + NM +DE+ AK+
Sbjct: 160 CRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQ 219
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRA 265
+ AP +++ + K+LGRLPVV+F +MM LG D +P K A
Sbjct: 220 LGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYA 279
Query: 266 QAIVRAVTHYSDPEVLAEVSCGLGEAMVGLN----LSDHKVE 303
+AIV A THY D E++A +S GLG AM G++ L +H+++
Sbjct: 280 RAIVEATTHYEDYELIAHLSKGLGGAMRGIDIATLLPEHRMQ 321
>pdb|3FEM|A Chain A, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|B Chain B, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|C Chain C, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|D Chain D, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|E Chain E, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|F Chain F, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
Length = 297
Score = 314 bits (805), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 150/275 (54%), Positives = 200/275 (72%), Gaps = 1/275 (0%)
Query: 24 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQL 83
F +K GLAQML+GGVIMDVVTPEQA++AE++GACAVMALE +PAD+R G V RMSDP++
Sbjct: 6 FKIKSGLAQMLKGGVIMDVVTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKM 65
Query: 84 IKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFV 143
IK+I SV+IPVMAK RIGHFVEAQI+EA+ +DY+DESEVLTPAD +HI K F++PFV
Sbjct: 66 IKDIMNSVSIPVMAKVRIGHFVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFV 125
Query: 144 CGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNM-DDDEVFTF 202
CG ++LGEALRRI EGAAMIRTKGEAGTG++ EAV+H+R + +I+ + + +D++
Sbjct: 126 CGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKV 185
Query: 203 AKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPV 262
A+++ P L+ + G+LPVV+F ++MQLGCD +PV
Sbjct: 186 AEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPV 245
Query: 263 KRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 297
+ A A+V A TH+ +P L EVS LGE M G+++
Sbjct: 246 RLATAVVEATTHFDNPSKLLEVSSDLGELMGGVSI 280
>pdb|4ADT|A Chain A, Crystal Structure Of Plasmodial Plp Synthase
pdb|4ADT|B Chain B, Crystal Structure Of Plasmodial Plp Synthase
pdb|4ADU|A Chain A, Crystal Structure Of Plasmodial Plp Synthase With Bound
R5p Intermediate
pdb|4ADU|B Chain B, Crystal Structure Of Plasmodial Plp Synthase With Bound
R5p Intermediate
Length = 297
Score = 308 bits (789), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 149/269 (55%), Positives = 197/269 (73%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIK 85
+K G +ML+GGVIMDV EQA++AE+AGA VM LE +P+++R+ GVAR DP I+
Sbjct: 12 LKHGWCEMLKGGVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIE 71
Query: 86 EIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCG 145
EI++ ++I V+AK RIGHFVEAQILE + +D +DESEVLT ADE NHINKH F+ PFVCG
Sbjct: 72 EIRKCISINVLAKVRIGHFVEAQILEELKVDMLDESEVLTMADEYNHINKHKFKTPFVCG 131
Query: 146 CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205
C NLGEALRRI EGA+MIRTKGEAGTGNIIEA++H+R+V +I+ L ++D+ EV+ FAKK
Sbjct: 132 CTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKK 191
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRA 265
+ AP DL++ T++L RLPVV+F M MQLG D +P K A
Sbjct: 192 LRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMA 251
Query: 266 QAIVRAVTHYSDPEVLAEVSCGLGEAMVG 294
+IV AV+++++P++L VS GLG+AM G
Sbjct: 252 SSIVMAVSNFNNPKILLNVSLGLGKAMHG 280
>pdb|4ADS|A Chain A, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|B Chain B, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|C Chain C, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|D Chain D, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|E Chain E, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|F Chain F, Crystal Structure Of Plasmodial Plp Synthase Complex
Length = 282
Score = 307 bits (786), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 149/269 (55%), Positives = 197/269 (73%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIK 85
+K G +ML+GGVIMDV EQA++AE+AGA VM LE +P+++R+ GVAR DP I+
Sbjct: 10 LKHGWCEMLKGGVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIE 69
Query: 86 EIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCG 145
EI++ ++I V+AK RIGHFVEAQILE + +D +DESEVLT ADE NHINKH F+ PFVCG
Sbjct: 70 EIRKCISINVLAKVRIGHFVEAQILEELKVDMLDESEVLTMADEYNHINKHKFKTPFVCG 129
Query: 146 CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205
C NLGEALRRI EGA+MIRTKGEAGTGNIIEA++H+R+V +I+ L ++D+ EV+ FAKK
Sbjct: 130 CTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKK 189
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRA 265
+ AP DL++ T++L RLPVV+F M MQLG D +P K A
Sbjct: 190 LRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMA 249
Query: 266 QAIVRAVTHYSDPEVLAEVSCGLGEAMVG 294
+IV AV+++++P++L VS GLG+AM G
Sbjct: 250 SSIVMAVSNFNNPKILLNVSLGLGKAMHG 278
>pdb|3O05|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O05|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O05|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O06|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O06|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O06|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O07|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
pdb|3O07|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
pdb|3O07|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
Length = 291
Score = 301 bits (772), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/266 (54%), Positives = 193/266 (72%), Gaps = 1/266 (0%)
Query: 33 MLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT 92
ML+GGVIMDVVTPEQA++AE++GACAVMALE +PAD+R G V RMSDP++IK+I SV+
Sbjct: 9 MLKGGVIMDVVTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVS 68
Query: 93 IPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEA 152
IPVMAK RIGHFVEAQI+EA+ +DY+DESEVLTPAD +HI K F++PFVCG ++LGEA
Sbjct: 69 IPVMAKVRIGHFVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEA 128
Query: 153 LRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNM-DDDEVFTFAKKIAAPYD 211
LRRI EGAAMIRTKGEAGTG++ EAV+H+R + +I+ + + +D++ A+++ P
Sbjct: 129 LRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVS 188
Query: 212 LVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRA 271
L+ + G+LPVV+F ++MQLGCD +PV+ A A+V A
Sbjct: 189 LLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEA 248
Query: 272 VTHYSDPEVLAEVSCGLGEAMVGLNL 297
TH+ +P L EVS LGE M G+++
Sbjct: 249 TTHFDNPSKLLEVSSDLGELMGGVSI 274
>pdb|2YZR|A Chain A, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
pdb|2YZR|B Chain B, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
pdb|2YZR|C Chain C, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
Length = 330
Score = 295 bits (754), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/316 (50%), Positives = 202/316 (63%), Gaps = 37/316 (11%)
Query: 20 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMS 79
KK +K G A+M++ GV+MDV EQA++AEEAGA AVMALERVPADIR+ GGVARMS
Sbjct: 2 KKGTDLLKKGFAKMVKHGVVMDVTNVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMS 61
Query: 80 DPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFR 139
DP LI+EI +V+IPVMAK RIGH EA +LEAIG+D +DESEVLT AD HI K F
Sbjct: 62 DPALIEEIMDAVSIPVMAKCRIGHTTEALVLEAIGVDMIDESEVLTQADPFFHIYKKKFN 121
Query: 140 IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199
+PFVCG RNLGEA+RRI EGAAMIRTKGEAGTGNI+EAVRH+R + I L+ M D+EV
Sbjct: 122 VPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTDEEV 181
Query: 200 -------------------------------------FTFAKKIAAPYDLVMQTKQLGRL 222
FT A+ I Y+++++ K+LGRL
Sbjct: 182 YGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRL 241
Query: 223 PVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLA 282
PVV+F +MMQLG D +P++RA+AIV A +Y P+++A
Sbjct: 242 PVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNYDKPDIVA 301
Query: 283 EVSCGLGEAMVGLNLS 298
EVS LGEAM G++++
Sbjct: 302 EVSKNLGEAMKGIDIT 317
>pdb|4FIQ|A Chain A, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|B Chain B, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|C Chain C, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|D Chain D, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|E Chain E, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|F Chain F, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIR|A Chain A, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|B Chain B, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|C Chain C, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|D Chain D, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|E Chain E, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|F Chain F, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
Length = 335
Score = 290 bits (743), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 158/314 (50%), Positives = 199/314 (63%), Gaps = 37/314 (11%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIK 85
+K G A+M++GGVIMDV EQAR+AEEAGA AVMAL +VPADIR GGVARM+ + I+
Sbjct: 15 LKRGFAKMVKGGVIMDVTNAEQARIAEEAGAVAVMALHKVPADIRKAGGVARMAPVEKIQ 74
Query: 86 EIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCG 145
EI +VTIPVMAK RIGH EA+ILEA+G+D +DESEVLTPAD HI K F PFVCG
Sbjct: 75 EIMDAVTIPVMAKCRIGHEAEARILEALGVDMIDESEVLTPADPFFHIYKKKFTAPFVCG 134
Query: 146 CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205
RNLGEA+RRI EGAAMIRTKGEAGTGNIIEAVRHVR V +IR+++ M D+E++ A+K
Sbjct: 135 ARNLGEAVRRIWEGAAMIRTKGEAGTGNIIEAVRHVRLVNENIRLIQRMTDEEIYGVAEK 194
Query: 206 IAAP-------------------------------------YDLVMQTKQLGRLPVVHFX 228
A P Y ++++ K+LGRLPVV+F
Sbjct: 195 FAEPYLRLAFSVKEISGLPKRVLENEPIYEGFTYREIVEDIYKILLEIKKLGRLPVVNFA 254
Query: 229 XXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGL 288
+MM +G D +P K A+AIV AV H+ +P+VLAE+S +
Sbjct: 255 AGGVATPADAALMMAMGMDGVFVGSGIFKSSNPPKMARAIVEAVNHWDEPDVLAEISREI 314
Query: 289 GEAMVGLNLSDHKV 302
GE M G + + +V
Sbjct: 315 GEPMRGQAIEELQV 328
>pdb|1C40|A Chain A, Bar-Headed Goose Hemoglobin (Aquomet Form)
Length = 141
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 156 IREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNM 194
++ G+A I+ G+ ++EAV H+ + G + L N+
Sbjct: 48 LQHGSAQIKAHGKKVVAALVEAVNHIDDIAGALSKLSNL 86
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 50 VAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG---HFVE 106
V E AC + + + + G D +LI+ +K +V IPV+A + G HF E
Sbjct: 454 VWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEE 513
Query: 107 A 107
A
Sbjct: 514 A 514
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 50 VAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG---HFVE 106
V E AC + + + + G D +LI+ +K +V IPV+A + G HF E
Sbjct: 454 VWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEE 513
Query: 107 A 107
A
Sbjct: 514 A 514
>pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And
Incoming Nucleotide (Nrm)
pdb|3MR3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
3't Of A Cpd In The Active Site (Tt1)
pdb|3MR5|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
1bp Upstream Of The Active Site (Tt3)
pdb|3SI8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
5't Of A Cpd In The Active Site (Tt2)
pdb|4DL2|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Cg
Template (Gg0a)
pdb|4DL3|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Gg
Template (Gg0b).
pdb|4DL4|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
3'g Of Cisplatin Crosslinked Gs (Pt-Gg1).
pdb|4DL5|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
5'g Of Cisplatin Crosslinked Gs (Pt-Gg2).
pdb|4DL6|A Chain A, Human Dna Polymerase Eta Extending Primer Immediately
After Cisplatin Crosslink (Pt-Gg3).
pdb|4DL7|A Chain A, Human Dna Polymerase Eta Fails To Extend Primer 2
Nucleotide After Cisplatin Crosslink (Pt-Gg4).
pdb|4ECQ|A Chain A, Human Dna Polymerase Eta- Dna Ternary Complex: At Crystal
At Ph6.8(K+ Mes) With 1 Ca2+ Ion
pdb|4ECR|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 40 Sec
pdb|4ECS|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 80 Sec
pdb|4ECT|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 140 Sec
pdb|4ECU|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 200 Sec
pdb|4ECV|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 230 Sec
pdb|4ECW|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 250 Sec
pdb|4ECX|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 300 Sec
pdb|4ECY|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.0 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ECZ|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.5 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ED0|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.8 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ED1|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.0 (Na+ Mes) With 1 Ca2+ Ion
pdb|4ED2|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.2 (Na+ Hepes) With 1 Ca2+ Ion
pdb|4ED3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.5 (Na+ Hepes) With 1 Ca2+ Ion
pdb|4ED6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 6.7 For 15 Hr, Sideway
Translocation
pdb|4ED7|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Tg Crystal
At Ph 7.0 (K+ Mes) With 1 Ca2+ Ion
pdb|4ED8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The Tg Crystal At Ph 7.0, Normal Translocation
Length = 435
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 72 QGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEEN 131
Q V+ S PQL ++ P+ +G + A ++E +GI+Y+ E T + ++
Sbjct: 238 QTLVSHGSVPQLFSQM------PIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQS 291
Query: 132 HINKHN 137
H + N
Sbjct: 292 HFGEKN 297
>pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
2bp Upstream Of The Active Site (Tt4)
pdb|3TQ1|A Chain A, Human Dna Polymerase Eta In Binary Complex With Dna
pdb|4EEY|A Chain A, Crystal Structure Of Human Dna Polymerase Eta In Ternary
Complex With A Cisplatin Dna Adduct
Length = 435
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 72 QGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEEN 131
Q V+ S PQL ++ P+ +G + A ++E +GI+Y+ E T + ++
Sbjct: 238 QTLVSHGSVPQLFSQM------PIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQS 291
Query: 132 HINKHN 137
H + N
Sbjct: 292 HFGEKN 297
>pdb|3BW3|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 18/85 (21%)
Query: 30 LAQMLRGGVIMDVV--TPEQARVAEEAGACAVMALERVPADIRSQG-----------GVA 76
+A++ R G + V TPE+AR E AGA AV+A + V A QG G+
Sbjct: 138 IARLRRAGTLTLVTATTPEEARAVEAAGADAVIA-QGVEAG-GDQGTHRDSSEDDGAGIG 195
Query: 77 RMSDPQLIKEIKQSVTIPVMAKARI 101
+S L+ +++++V IPV+A I
Sbjct: 196 LLS---LLAQVREAVDIPVVAAGGI 217
>pdb|3BW4|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 18/85 (21%)
Query: 30 LAQMLRGGVIMDVV--TPEQARVAEEAGACAVMALERVPADIRSQG-----------GVA 76
+A++ R G + V TPE+AR E AGA AV+A + V A QG G+
Sbjct: 138 IARLRRAGTLTLVTATTPEEARAVEAAGADAVIA-QGVEAG-GHQGTHRDSSEDDGAGIG 195
Query: 77 RMSDPQLIKEIKQSVTIPVMAKARI 101
+S L+ +++++V IPV+A I
Sbjct: 196 LLS---LLAQVREAVDIPVVAAGGI 217
>pdb|3BW2|A Chain A, Crystal Structures And Site-Directed Mutagenesis Study Of
Nitroalkane Oxidase From Streptomyces Ansochromogenes
Length = 369
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 18/85 (21%)
Query: 30 LAQMLRGGVIMDVV--TPEQARVAEEAGACAVMALERVPADIRSQG-----------GVA 76
+A++ R G + V TPE+AR E AGA AV+A + V A QG G+
Sbjct: 138 IARLRRAGTLTLVTATTPEEARAVEAAGADAVIA-QGVEAG-GHQGTHRDSSEDDGAGIG 195
Query: 77 RMSDPQLIKEIKQSVTIPVMAKARI 101
+S L+ +++++V IPV+A I
Sbjct: 196 LLS---LLAQVREAVDIPVVAAGGI 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,683,098
Number of Sequences: 62578
Number of extensions: 270089
Number of successful extensions: 651
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 31
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)