Query 021609
Match_columns 310
No_of_seqs 174 out of 1890
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:19:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1606 Stationary phase-induc 100.0 2.4E-49 5.2E-54 336.9 19.9 295 16-310 1-296 (296)
2 TIGR00343 pyridoxal 5'-phospha 100.0 2.2E-44 4.7E-49 322.9 25.0 283 26-309 1-286 (287)
3 COG0214 SNZ1 Pyridoxine biosyn 100.0 3.3E-44 7.1E-49 309.6 19.0 291 18-308 3-294 (296)
4 PRK04180 pyridoxal biosynthesi 100.0 9.7E-44 2.1E-48 319.6 21.4 288 20-309 2-292 (293)
5 cd04727 pdxS PdxS is a subunit 100.0 9.1E-40 2E-44 293.1 25.0 280 28-308 1-282 (283)
6 PF01680 SOR_SNZ: SOR/SNZ fami 100.0 3E-29 6.5E-34 208.7 12.3 206 22-227 1-206 (208)
7 PRK00278 trpC indole-3-glycero 99.9 1.2E-21 2.6E-26 178.6 21.7 189 37-269 64-257 (260)
8 PLN02460 indole-3-glycerol-pho 99.9 1.6E-21 3.4E-26 181.0 21.4 193 36-269 132-334 (338)
9 COG0134 TrpC Indole-3-glycerol 99.9 1.8E-21 3.9E-26 173.9 19.8 191 36-268 59-252 (254)
10 PRK13957 indole-3-glycerol-pho 99.9 8.9E-21 1.9E-25 169.9 23.1 190 36-268 54-246 (247)
11 PF00218 IGPS: Indole-3-glycer 99.9 9E-22 2E-26 177.5 16.0 191 36-268 61-254 (254)
12 PF04131 NanE: Putative N-acet 99.9 5.3E-21 1.1E-25 163.0 17.6 175 46-274 3-192 (192)
13 cd00331 IGPS Indole-3-glycerol 99.9 2.8E-20 6E-25 165.3 22.1 188 36-267 24-216 (217)
14 PRK13802 bifunctional indole-3 99.9 3.9E-20 8.3E-25 187.1 22.6 197 36-274 63-262 (695)
15 COG3010 NanE Putative N-acetyl 99.9 6.3E-20 1.4E-24 156.9 19.9 195 29-274 8-228 (229)
16 PRK09427 bifunctional indole-3 99.8 4.8E-19 1E-23 172.1 21.0 218 36-297 63-285 (454)
17 COG0352 ThiE Thiamine monophos 99.8 9.9E-18 2.1E-22 147.3 19.0 183 45-275 24-209 (211)
18 COG0106 HisA Phosphoribosylfor 99.8 1.3E-17 2.7E-22 147.6 17.8 205 25-258 9-227 (241)
19 PRK01130 N-acetylmannosamine-6 99.7 3.2E-16 7E-21 139.6 19.9 177 46-273 27-220 (221)
20 PRK14114 1-(5-phosphoribosyl)- 99.7 6.8E-16 1.5E-20 139.1 18.7 205 25-259 8-230 (241)
21 COG0107 HisF Imidazoleglycerol 99.7 2.7E-16 5.9E-21 137.0 15.4 210 30-259 17-236 (256)
22 PRK13587 1-(5-phosphoribosyl)- 99.7 1.3E-15 2.7E-20 136.9 19.1 206 24-257 8-226 (234)
23 PLN02446 (5-phosphoribosyl)-5- 99.7 1.1E-15 2.3E-20 138.0 18.0 203 25-257 8-245 (262)
24 cd04729 NanE N-acetylmannosami 99.7 1.5E-15 3.2E-20 135.2 18.8 169 46-262 31-216 (219)
25 KOG4201 Anthranilate synthase 99.7 4.1E-16 8.8E-21 134.2 14.2 190 36-269 84-283 (289)
26 PRK14024 phosphoribosyl isomer 99.7 2.3E-15 5.1E-20 135.9 19.6 198 24-263 10-233 (241)
27 TIGR03151 enACPred_II putative 99.7 1.6E-15 3.5E-20 141.4 17.4 190 22-260 6-198 (307)
28 PRK13585 1-(5-phosphoribosyl)- 99.7 4.7E-15 1E-19 133.7 19.2 196 25-261 10-231 (241)
29 TIGR02129 hisA_euk phosphoribo 99.7 4.7E-15 1E-19 133.3 16.4 203 25-257 8-237 (253)
30 PRK13586 1-(5-phosphoribosyl)- 99.6 1.7E-14 3.7E-19 129.3 19.5 202 25-257 9-223 (232)
31 PRK03512 thiamine-phosphate py 99.6 1.7E-14 3.7E-19 127.7 18.1 184 46-276 23-210 (211)
32 PRK06512 thiamine-phosphate py 99.6 1.5E-14 3.3E-19 128.7 17.8 182 46-276 30-216 (221)
33 cd04732 HisA HisA. Phosphorib 99.6 2.6E-14 5.7E-19 128.1 19.4 194 25-259 7-226 (234)
34 PRK00748 1-(5-phosphoribosyl)- 99.6 2.8E-14 6.1E-19 127.9 19.3 193 26-259 9-227 (233)
35 TIGR00007 phosphoribosylformim 99.6 3E-14 6.5E-19 127.5 19.3 193 26-259 7-225 (230)
36 PRK02615 thiamine-phosphate py 99.6 1.8E-14 4E-19 135.7 17.9 181 46-274 161-344 (347)
37 PRK12290 thiE thiamine-phospha 99.6 1.7E-14 3.6E-19 138.1 16.8 186 45-277 220-417 (437)
38 TIGR01919 hisA-trpF 1-(5-phosp 99.6 3.3E-14 7.2E-19 128.4 17.9 207 25-258 10-231 (243)
39 PF00977 His_biosynth: Histidi 99.6 2E-15 4.3E-20 135.3 9.8 207 25-257 7-225 (229)
40 cd04731 HisF The cyclase subun 99.6 1.3E-13 2.8E-18 124.6 20.8 180 44-262 28-233 (243)
41 cd04723 HisA_HisF Phosphoribos 99.6 1.3E-13 2.7E-18 124.0 19.8 205 25-261 7-227 (233)
42 PF03060 NMO: Nitronate monoox 99.6 4.2E-14 9E-19 133.4 16.9 207 21-274 5-240 (330)
43 PRK02083 imidazole glycerol ph 99.6 2.2E-13 4.8E-18 123.8 20.3 183 40-263 27-238 (253)
44 PRK01033 imidazole glycerol ph 99.6 3.6E-13 7.8E-18 122.8 21.4 195 43-259 30-233 (258)
45 COG0042 tRNA-dihydrouridine sy 99.6 1.8E-14 3.8E-19 135.2 12.4 147 46-265 83-239 (323)
46 cd04728 ThiG Thiazole synthase 99.6 1.2E-13 2.6E-18 122.6 16.3 172 105-278 24-230 (248)
47 PRK00208 thiG thiazole synthas 99.6 1.3E-13 2.9E-18 122.4 16.3 171 105-277 25-229 (250)
48 TIGR00735 hisF imidazoleglycer 99.6 6.2E-13 1.3E-17 121.0 20.0 200 42-261 29-238 (254)
49 PLN02591 tryptophan synthase 99.5 1.1E-13 2.4E-18 125.1 14.8 182 44-257 18-223 (250)
50 PF05690 ThiG: Thiazole biosyn 99.5 3.6E-14 7.8E-19 124.5 10.3 170 106-278 24-230 (247)
51 PRK09140 2-dehydro-3-deoxy-6-p 99.5 1.2E-12 2.7E-17 115.3 19.6 172 46-273 26-204 (206)
52 PRK00043 thiE thiamine-phospha 99.5 7.4E-13 1.6E-17 116.7 18.3 181 46-274 25-210 (212)
53 CHL00162 thiG thiamin biosynth 99.5 3.7E-13 8.1E-18 119.4 16.1 170 106-278 32-244 (267)
54 TIGR03572 WbuZ glycosyl amidat 99.5 1.8E-12 3.9E-17 116.3 19.9 174 42-256 29-231 (232)
55 PLN02617 imidazole glycerol ph 99.5 8E-13 1.7E-17 131.3 19.1 216 37-266 261-526 (538)
56 PRK04128 1-(5-phosphoribosyl)- 99.5 1.7E-12 3.6E-17 116.3 19.3 202 26-261 10-220 (228)
57 PRK10415 tRNA-dihydrouridine s 99.5 1.4E-13 3E-18 129.3 12.3 152 47-272 82-241 (321)
58 cd00381 IMPDH IMPDH: The catal 99.5 8.8E-13 1.9E-17 124.0 17.7 200 19-259 25-233 (325)
59 CHL00200 trpA tryptophan synth 99.5 4.1E-13 8.9E-18 122.4 14.6 182 45-257 32-236 (263)
60 PRK06843 inosine 5-monophospha 99.5 1.4E-12 3.1E-17 124.8 18.9 196 22-258 37-291 (404)
61 PLN02334 ribulose-phosphate 3- 99.5 3.5E-12 7.6E-17 114.3 19.6 191 46-274 24-224 (229)
62 TIGR00262 trpA tryptophan synt 99.5 7.3E-13 1.6E-17 120.5 15.0 180 45-257 27-232 (256)
63 TIGR00693 thiE thiamine-phosph 99.5 1.2E-12 2.7E-17 114.2 15.5 175 46-267 17-195 (196)
64 TIGR00734 hisAF_rel hisA/hisF 99.5 2.2E-12 4.8E-17 115.0 17.3 195 25-257 8-218 (221)
65 PRK07695 transcriptional regul 99.5 3E-12 6.4E-17 112.5 17.8 175 51-275 23-200 (201)
66 PF01207 Dus: Dihydrouridine s 99.5 6.5E-14 1.4E-18 130.9 7.7 146 47-265 71-224 (309)
67 PRK10550 tRNA-dihydrouridine s 99.5 1E-12 2.2E-17 122.9 15.0 146 46-265 79-235 (312)
68 cd04730 NPD_like 2-Nitropropan 99.5 4.1E-12 8.9E-17 113.9 18.3 186 28-260 3-193 (236)
69 COG2070 Dioxygenases related t 99.5 8.6E-13 1.9E-17 124.3 14.2 199 18-260 5-221 (336)
70 COG0159 TrpA Tryptophan syntha 99.5 1.2E-12 2.5E-17 118.1 14.0 181 45-257 34-238 (265)
71 cd04739 DHOD_like Dihydroorota 99.5 5.8E-13 1.3E-17 125.3 12.6 190 46-299 116-310 (325)
72 PRK08318 dihydropyrimidine deh 99.5 1E-12 2.2E-17 127.9 14.2 189 46-293 117-321 (420)
73 PRK07565 dihydroorotate dehydr 99.4 6.5E-13 1.4E-17 125.5 12.1 190 46-299 118-312 (334)
74 COG2022 ThiG Uncharacterized e 99.4 4.8E-12 1E-16 110.5 16.2 168 107-277 33-236 (262)
75 PRK06552 keto-hydroxyglutarate 99.4 1.2E-11 2.6E-16 109.5 19.0 170 46-273 29-210 (213)
76 cd04743 NPD_PKS 2-Nitropropane 99.4 5.8E-12 1.2E-16 117.2 16.8 188 27-260 2-210 (320)
77 PF00478 IMPDH: IMP dehydrogen 99.4 1.9E-11 4.1E-16 115.0 20.5 196 22-259 32-247 (352)
78 TIGR00737 nifR3_yhdG putative 99.4 1.1E-12 2.5E-17 123.1 12.3 145 46-263 79-231 (319)
79 PLN02898 HMP-P kinase/thiamin- 99.4 4.5E-12 9.8E-17 126.0 16.9 183 46-276 311-499 (502)
80 TIGR00742 yjbN tRNA dihydrouri 99.4 2.3E-12 4.9E-17 120.7 13.9 154 46-266 71-235 (318)
81 TIGR01037 pyrD_sub1_fam dihydr 99.4 3.9E-12 8.4E-17 118.4 14.8 77 210-291 223-299 (300)
82 cd04726 KGPDC_HPS 3-Keto-L-gul 99.4 1.5E-11 3.3E-16 107.6 17.5 179 41-266 8-200 (202)
83 TIGR01163 rpe ribulose-phospha 99.4 1.4E-11 3.1E-16 108.3 17.0 184 45-268 14-209 (210)
84 PF02581 TMP-TENI: Thiamine mo 99.4 5.2E-12 1.1E-16 109.1 13.5 162 46-255 16-180 (180)
85 cd04740 DHOD_1B_like Dihydroor 99.4 6.8E-12 1.5E-16 116.5 15.0 182 46-291 106-296 (296)
86 PRK05437 isopentenyl pyrophosp 99.4 1.8E-12 3.9E-17 123.2 11.2 229 4-291 89-335 (352)
87 KOG2335 tRNA-dihydrouridine sy 99.4 1.9E-12 4.1E-17 120.0 11.0 144 47-264 91-243 (358)
88 PRK04302 triosephosphate isome 99.4 2.7E-11 5.9E-16 108.2 17.7 163 81-271 45-221 (223)
89 PRK09517 multifunctional thiam 99.4 1.1E-11 2.3E-16 128.7 17.3 191 46-284 23-226 (755)
90 TIGR00736 nifR3_rel_arch TIM-b 99.4 3E-12 6.5E-17 114.3 11.4 130 52-257 89-225 (231)
91 PRK13111 trpA tryptophan synth 99.4 7.9E-12 1.7E-16 113.7 13.9 179 45-257 29-233 (258)
92 PRK11840 bifunctional sulfur c 99.4 1.9E-11 4E-16 113.0 16.3 172 105-278 98-304 (326)
93 PF00290 Trp_syntA: Tryptophan 99.4 2.3E-12 4.9E-17 116.9 10.0 180 45-257 27-231 (259)
94 PRK07455 keto-hydroxyglutarate 99.4 6.2E-11 1.3E-15 103.0 17.5 156 46-257 28-185 (187)
95 cd00564 TMP_TenI Thiamine mono 99.4 6.2E-11 1.3E-15 102.5 17.3 176 46-269 16-195 (196)
96 PRK07259 dihydroorotate dehydr 99.3 1.3E-11 2.8E-16 115.0 12.9 183 46-291 108-299 (301)
97 PLN02495 oxidoreductase, actin 99.3 1.7E-11 3.6E-16 117.2 13.7 196 46-296 131-341 (385)
98 PRK08649 inosine 5-monophospha 99.3 7.2E-11 1.6E-15 112.5 17.7 207 19-259 39-292 (368)
99 cd00429 RPE Ribulose-5-phospha 99.3 1.2E-10 2.6E-15 102.4 17.9 180 46-268 16-210 (211)
100 TIGR03128 RuMP_HxlA 3-hexulose 99.3 1.6E-10 3.4E-15 101.7 18.4 155 81-271 40-205 (206)
101 cd02809 alpha_hydroxyacid_oxid 99.3 1.6E-10 3.5E-15 107.6 18.2 198 45-301 84-295 (299)
102 cd02811 IDI-2_FMN Isopentenyl- 99.3 1.2E-11 2.5E-16 116.6 10.4 195 4-257 81-289 (326)
103 COG0269 SgbH 3-hexulose-6-phos 99.3 3E-10 6.4E-15 99.1 18.3 162 81-275 44-215 (217)
104 PRK13125 trpA tryptophan synth 99.3 3E-10 6.5E-15 102.8 19.2 174 46-257 22-219 (244)
105 cd04742 NPD_FabD 2-Nitropropan 99.3 1.1E-10 2.3E-15 112.3 17.0 190 22-259 8-255 (418)
106 PRK08883 ribulose-phosphate 3- 99.3 2.8E-10 6E-15 101.3 18.4 189 46-274 16-217 (220)
107 cd04724 Tryptophan_synthase_al 99.3 7.6E-11 1.6E-15 106.6 15.0 180 46-257 18-220 (242)
108 PRK11815 tRNA-dihydrouridine s 99.3 4.8E-11 1E-15 112.7 13.5 159 46-272 81-250 (333)
109 cd02940 DHPD_FMN Dihydropyrimi 99.3 7E-11 1.5E-15 110.0 14.4 163 46-262 117-290 (299)
110 PRK05581 ribulose-phosphate 3- 99.3 3.6E-10 7.9E-15 100.2 18.2 187 46-272 20-218 (220)
111 PRK08999 hypothetical protein; 99.3 1.1E-10 2.4E-15 109.2 15.5 162 46-256 148-312 (312)
112 TIGR02151 IPP_isom_2 isopenten 99.3 2.6E-11 5.6E-16 114.5 11.1 192 4-257 82-288 (333)
113 PRK05096 guanosine 5'-monophos 99.3 2.9E-10 6.3E-15 105.5 16.9 190 28-259 47-249 (346)
114 PRK05458 guanosine 5'-monophos 99.3 3.9E-10 8.6E-15 105.5 18.0 190 24-259 34-237 (326)
115 cd00452 KDPG_aldolase KDPG and 99.3 6.7E-10 1.4E-14 96.8 18.1 155 46-257 20-176 (190)
116 PRK07028 bifunctional hexulose 99.3 5.2E-10 1.1E-14 109.3 19.4 184 46-275 20-213 (430)
117 TIGR01304 IMP_DH_rel_2 IMP deh 99.2 4.3E-10 9.4E-15 107.0 16.7 242 21-301 38-360 (369)
118 COG0167 PyrD Dihydroorotate de 99.2 1.1E-10 2.3E-15 108.2 11.4 183 46-292 113-308 (310)
119 TIGR01305 GMP_reduct_1 guanosi 99.2 1.4E-09 3.1E-14 100.9 18.4 192 26-259 44-248 (343)
120 TIGR01182 eda Entner-Doudoroff 99.2 5.4E-09 1.2E-13 91.7 20.8 156 46-258 24-182 (204)
121 cd00958 DhnA Class I fructose- 99.2 5E-10 1.1E-14 100.6 14.2 128 104-272 79-234 (235)
122 cd02911 arch_FMN Archeal FMN-b 99.2 3.7E-10 8E-15 101.5 13.1 132 47-264 90-228 (233)
123 cd02801 DUS_like_FMN Dihydrour 99.2 5.5E-10 1.2E-14 99.7 13.4 143 46-262 71-221 (231)
124 PLN02274 inosine-5'-monophosph 99.1 9.3E-10 2E-14 109.1 14.8 133 104-259 250-387 (505)
125 PRK13307 bifunctional formalde 99.1 4.7E-09 1E-13 100.5 18.8 155 81-272 214-378 (391)
126 PTZ00170 D-ribulose-5-phosphat 99.1 4.7E-09 1E-13 94.1 17.6 188 46-276 23-225 (228)
127 TIGR02814 pfaD_fam PfaD family 99.1 2.6E-09 5.6E-14 103.5 17.0 191 21-259 12-260 (444)
128 cd00405 PRAI Phosphoribosylant 99.1 7.7E-09 1.7E-13 91.0 18.0 173 42-258 6-187 (203)
129 PRK08745 ribulose-phosphate 3- 99.1 3.4E-08 7.3E-13 88.1 21.6 188 46-273 20-220 (223)
130 PRK07807 inosine 5-monophospha 99.1 1.3E-09 2.8E-14 107.3 12.6 129 105-259 230-366 (479)
131 cd04722 TIM_phosphate_binding 99.1 9.6E-09 2.1E-13 88.1 16.3 171 45-253 15-200 (200)
132 PRK05286 dihydroorotate dehydr 99.1 3.7E-10 8E-15 107.2 8.0 66 210-279 276-343 (344)
133 PRK07114 keto-hydroxyglutarate 99.0 2.5E-08 5.3E-13 88.7 18.7 154 46-257 31-193 (222)
134 cd02810 DHOD_DHPD_FMN Dihydroo 99.0 1.5E-09 3.2E-14 100.5 11.0 49 210-262 230-281 (289)
135 PF01081 Aldolase: KDPG and KH 99.0 1.1E-08 2.4E-13 89.3 15.3 156 46-257 24-181 (196)
136 PRK02506 dihydroorotate dehydr 99.0 6.6E-10 1.4E-14 104.0 8.2 77 210-290 228-306 (310)
137 COG0434 SgcQ Predicted TIM-bar 99.0 3.6E-08 7.9E-13 86.8 18.4 190 46-276 38-261 (263)
138 PF03437 BtpA: BtpA family; I 99.0 4.4E-08 9.5E-13 88.6 19.1 188 46-273 33-253 (254)
139 PRK05718 keto-hydroxyglutarate 99.0 4.4E-08 9.6E-13 86.7 18.8 155 46-257 31-188 (212)
140 PRK06015 keto-hydroxyglutarate 99.0 1.1E-07 2.4E-12 83.2 20.5 156 46-257 20-177 (201)
141 cd04741 DHOD_1A_like Dihydroor 99.0 5E-09 1.1E-13 97.4 12.3 62 210-275 230-293 (294)
142 TIGR01303 IMP_DH_rel_1 IMP deh 99.0 6.2E-09 1.3E-13 102.5 13.0 133 104-259 227-364 (475)
143 TIGR01302 IMP_dehydrog inosine 99.0 1.3E-08 2.8E-13 100.0 14.5 129 104-259 226-363 (450)
144 PLN02826 dihydroorotate dehydr 99.0 5.2E-09 1.1E-13 101.1 11.3 78 210-291 328-407 (409)
145 TIGR01306 GMP_reduct_2 guanosi 98.9 6.2E-08 1.3E-12 90.5 18.0 191 23-259 30-234 (321)
146 TIGR02708 L_lactate_ox L-lacta 98.9 8.3E-09 1.8E-13 98.1 11.8 114 146-301 236-351 (367)
147 PRK07226 fructose-bisphosphate 98.9 1.9E-07 4.1E-12 85.7 20.3 69 211-281 186-260 (267)
148 TIGR01949 AroFGH_arch predicte 98.9 1.7E-08 3.6E-13 92.2 13.1 68 210-279 181-254 (258)
149 COG0036 Rpe Pentose-5-phosphat 98.9 4E-07 8.7E-12 80.0 20.8 183 46-269 20-214 (220)
150 cd02922 FCB2_FMN Flavocytochro 98.9 7.4E-08 1.6E-12 91.2 17.5 120 139-301 213-339 (344)
151 PRK08005 epimerase; Validated 98.9 1.8E-07 4E-12 82.5 18.8 181 46-268 17-207 (210)
152 cd04738 DHOD_2_like Dihydrooro 98.9 5.1E-09 1.1E-13 98.7 9.0 50 210-262 267-318 (327)
153 TIGR00259 thylakoid_BtpA membr 98.9 3.5E-07 7.7E-12 82.9 20.2 189 46-275 32-255 (257)
154 PRK05567 inosine 5'-monophosph 98.9 3.6E-08 7.8E-13 97.8 14.6 130 104-259 230-367 (486)
155 cd04736 MDH_FMN Mandelate dehy 98.9 2.5E-08 5.4E-13 94.6 12.1 131 129-301 227-357 (361)
156 PRK08091 ribulose-phosphate 3- 98.9 6.2E-07 1.3E-11 80.0 20.3 184 46-272 29-227 (228)
157 cd04737 LOX_like_FMN L-Lactate 98.8 3E-08 6.6E-13 94.0 12.3 121 139-301 221-344 (351)
158 PRK09722 allulose-6-phosphate 98.8 8.8E-07 1.9E-11 79.2 20.7 185 46-273 19-220 (229)
159 PTZ00314 inosine-5'-monophosph 98.8 7.6E-08 1.6E-12 95.5 14.8 128 104-259 243-380 (495)
160 COG0800 Eda 2-keto-3-deoxy-6-p 98.8 7E-07 1.5E-11 78.1 18.9 155 46-257 29-186 (211)
161 PLN02979 glycolate oxidase 98.8 3.5E-07 7.6E-12 86.5 17.9 121 138-300 222-345 (366)
162 PF01070 FMN_dh: FMN-dependent 98.8 4.5E-08 9.9E-13 93.2 11.3 122 138-301 224-348 (356)
163 cd03332 LMO_FMN L-Lactate 2-mo 98.8 6.2E-08 1.3E-12 92.7 12.2 121 139-301 253-376 (383)
164 PRK06806 fructose-bisphosphate 98.8 9.7E-07 2.1E-11 81.4 19.6 193 41-271 24-247 (281)
165 cd04734 OYE_like_3_FMN Old yel 98.8 1.1E-07 2.3E-12 90.3 13.7 170 46-276 145-332 (343)
166 cd02803 OYE_like_FMN_family Ol 98.8 2.1E-07 4.5E-12 87.6 15.1 156 46-262 145-319 (327)
167 PRK13523 NADPH dehydrogenase N 98.8 1.3E-07 2.9E-12 89.5 13.3 163 46-275 146-325 (337)
168 PRK14057 epimerase; Provisiona 98.7 2.9E-06 6.4E-11 76.7 20.8 187 46-274 36-243 (254)
169 KOG3111 D-ribulose-5-phosphate 98.7 1.4E-06 3E-11 74.6 17.3 186 46-275 21-220 (224)
170 PF04481 DUF561: Protein of un 98.7 1.9E-06 4.2E-11 75.1 18.4 178 46-265 31-227 (242)
171 PLN02493 probable peroxisomal 98.7 1.2E-07 2.5E-12 90.2 11.5 128 130-300 216-346 (367)
172 PLN02535 glycolate oxidase 98.7 1.3E-07 2.8E-12 90.0 11.7 88 138-257 222-312 (364)
173 TIGR01036 pyrD_sub2 dihydrooro 98.7 3.2E-08 7E-13 93.5 7.5 50 210-262 275-326 (335)
174 cd04735 OYE_like_4_FMN Old yel 98.7 8.2E-08 1.8E-12 91.5 10.3 152 46-262 148-321 (353)
175 PRK07107 inosine 5-monophospha 98.7 2.1E-07 4.6E-12 92.3 13.3 128 104-258 244-387 (502)
176 PRK11197 lldD L-lactate dehydr 98.7 1.9E-07 4E-12 89.3 11.5 121 139-301 245-368 (381)
177 PF01180 DHO_dh: Dihydroorotat 98.7 7.4E-09 1.6E-13 96.2 1.9 62 210-275 231-294 (295)
178 KOG4175 Tryptophan synthase al 98.7 3.6E-07 7.9E-12 78.6 11.7 180 46-257 36-240 (268)
179 TIGR01859 fruc_bis_ald_ fructo 98.6 4.5E-06 9.8E-11 77.1 19.6 183 41-257 22-235 (282)
180 PRK13306 ulaD 3-keto-L-gulonat 98.6 3.2E-06 7E-11 75.1 17.2 161 81-274 44-213 (216)
181 PRK07315 fructose-bisphosphate 98.6 6.1E-06 1.3E-10 76.6 19.2 197 41-272 24-250 (293)
182 KOG2550 IMP dehydrogenase/GMP 98.6 1.1E-06 2.3E-11 83.1 13.7 131 105-258 254-389 (503)
183 cd02933 OYE_like_FMN Old yello 98.6 1.7E-06 3.8E-11 81.9 14.5 149 46-262 156-322 (338)
184 PRK04169 geranylgeranylglycery 98.5 4.9E-06 1.1E-10 74.5 16.4 60 208-271 170-230 (232)
185 PRK08227 autoinducer 2 aldolas 98.5 2.2E-06 4.8E-11 78.1 14.4 69 214-284 185-258 (264)
186 cd02931 ER_like_FMN Enoate red 98.5 1.9E-06 4.1E-11 83.1 14.3 176 46-276 154-352 (382)
187 PF00834 Ribul_P_3_epim: Ribul 98.5 1.1E-06 2.5E-11 77.1 11.5 171 46-258 16-200 (201)
188 cd04733 OYE_like_2_FMN Old yel 98.5 3.1E-06 6.6E-11 80.3 14.9 159 46-262 153-330 (338)
189 cd02812 PcrB_like PcrB_like pr 98.5 7.2E-06 1.6E-10 72.8 15.5 51 208-262 161-212 (219)
190 cd02932 OYE_YqiM_FMN Old yello 98.5 3.7E-06 8.1E-11 79.6 14.6 151 46-262 158-328 (336)
191 COG1830 FbaB DhnA-type fructos 98.5 1E-05 2.2E-10 73.0 15.9 181 38-277 38-262 (265)
192 PRK06852 aldolase; Validated 98.4 1.8E-05 3.9E-10 73.5 17.9 188 39-280 55-295 (304)
193 cd02930 DCR_FMN 2,4-dienoyl-Co 98.4 2.5E-06 5.3E-11 81.4 12.3 58 210-276 265-323 (353)
194 cd02808 GltS_FMN Glutamate syn 98.4 2.7E-06 5.7E-11 82.3 11.9 104 129-258 204-320 (392)
195 KOG0538 Glycolate oxidase [Ene 98.4 1.3E-06 2.8E-11 79.7 8.8 94 131-257 216-312 (363)
196 cd02929 TMADH_HD_FMN Trimethyl 98.4 9.8E-06 2.1E-10 77.8 14.8 58 210-276 278-336 (370)
197 PRK08255 salicylyl-CoA 5-hydro 98.4 6.6E-06 1.4E-10 86.1 14.5 152 46-262 555-725 (765)
198 PRK00230 orotidine 5'-phosphat 98.3 7.5E-05 1.6E-09 67.0 18.5 44 229-273 174-228 (230)
199 PRK13813 orotidine 5'-phosphat 98.3 4.8E-05 1E-09 67.4 16.4 46 229-274 168-214 (215)
200 TIGR01768 GGGP-family geranylg 98.3 4.5E-05 9.7E-10 67.9 15.2 51 209-263 166-217 (223)
201 PRK11572 copper homeostasis pr 98.3 0.00018 3.9E-09 64.8 19.1 168 42-254 8-200 (248)
202 cd04747 OYE_like_5_FMN Old yel 98.2 1.6E-05 3.5E-10 75.9 13.1 49 210-262 269-336 (361)
203 TIGR00078 nadC nicotinate-nucl 98.2 1.3E-05 2.9E-10 73.3 10.8 87 130-258 168-255 (265)
204 PRK06801 hypothetical protein; 98.2 0.00017 3.7E-09 66.7 18.1 193 41-273 24-249 (286)
205 COG1902 NemA NADH:flavin oxido 98.1 4.5E-05 9.7E-10 72.9 13.7 164 46-277 153-336 (363)
206 cd01572 QPRTase Quinolinate ph 98.1 2.2E-05 4.8E-10 72.0 11.1 86 130-258 172-260 (268)
207 PRK13305 sgbH 3-keto-L-gulonat 98.1 8.4E-05 1.8E-09 66.1 14.5 160 81-274 44-213 (218)
208 PRK08072 nicotinate-nucleotide 98.1 2.8E-05 6E-10 71.6 11.4 89 127-258 175-266 (277)
209 TIGR01769 GGGP geranylgeranylg 98.1 0.00019 4.2E-09 63.2 16.2 43 208-252 163-205 (205)
210 PF03932 CutC: CutC family; I 98.1 0.00033 7.2E-09 61.4 17.4 166 42-252 7-199 (201)
211 cd04731 HisF The cyclase subun 98.1 2.5E-05 5.3E-10 70.5 10.3 61 207-272 57-117 (243)
212 COG1304 idi Isopentenyl diphos 98.1 9.5E-06 2.1E-10 77.2 7.8 118 142-301 222-341 (360)
213 cd00945 Aldolase_Class_I Class 98.1 0.0003 6.6E-09 60.6 16.6 153 46-252 17-201 (201)
214 PRK07428 nicotinate-nucleotide 98.1 3.4E-05 7.4E-10 71.3 11.0 94 127-259 183-278 (288)
215 cd01573 modD_like ModD; Quinol 98.1 2.7E-05 5.9E-10 71.6 9.8 90 128-257 172-262 (272)
216 PRK05742 nicotinate-nucleotide 98.0 3.9E-05 8.4E-10 70.6 10.7 89 129-258 179-267 (277)
217 cd01568 QPRTase_NadC Quinolina 98.0 3.8E-05 8.2E-10 70.6 10.6 91 128-257 169-260 (269)
218 PRK01222 N-(5'-phosphoribosyl) 98.0 0.0023 4.9E-08 56.7 21.3 184 42-275 10-208 (210)
219 PRK02083 imidazole glycerol ph 98.0 3.9E-05 8.5E-10 69.7 9.5 61 207-272 60-120 (253)
220 COG1646 Predicted phosphate-bi 98.0 0.00037 8.1E-09 61.7 15.0 58 209-273 181-238 (240)
221 PRK08185 hypothetical protein; 97.9 0.0014 3E-08 60.6 19.0 184 41-257 19-233 (283)
222 PRK10605 N-ethylmaleimide redu 97.9 0.0001 2.2E-09 70.6 12.0 58 210-277 281-339 (362)
223 TIGR00735 hisF imidazoleglycer 97.9 5.6E-05 1.2E-09 68.8 9.4 52 207-262 60-111 (254)
224 PRK05848 nicotinate-nucleotide 97.9 8E-05 1.7E-09 68.4 10.3 94 126-258 168-263 (273)
225 KOG0623 Glutamine amidotransfe 97.9 0.00045 9.8E-09 64.2 14.8 205 46-262 273-525 (541)
226 COG0135 TrpF Phosphoribosylant 97.9 0.003 6.6E-08 55.7 19.3 184 42-274 9-207 (208)
227 PRK09250 fructose-bisphosphate 97.9 0.00051 1.1E-08 64.6 14.8 196 41-274 89-338 (348)
228 PTZ00314 inosine-5'-monophosph 97.8 0.0012 2.6E-08 65.8 16.6 38 22-63 45-82 (495)
229 PF09370 TIM-br_sig_trns: TIM- 97.8 0.0031 6.7E-08 57.2 17.4 192 43-257 23-251 (268)
230 TIGR01334 modD putative molybd 97.7 0.0012 2.6E-08 60.8 14.8 126 92-256 122-267 (277)
231 cd04732 HisA HisA. Phosphorib 97.7 0.00029 6.3E-09 62.9 10.4 60 207-271 59-118 (234)
232 COG3142 CutC Uncharacterized p 97.7 0.0062 1.3E-07 53.9 17.6 165 42-250 8-198 (241)
233 PLN02274 inosine-5'-monophosph 97.7 0.0038 8.1E-08 62.4 18.4 40 210-252 277-317 (505)
234 PRK08649 inosine 5-monophospha 97.7 0.0012 2.6E-08 63.3 14.1 74 148-254 143-217 (368)
235 PF00724 Oxidored_FMN: NADH:fl 97.6 8.8E-05 1.9E-09 70.4 6.1 49 210-262 280-329 (341)
236 PRK00507 deoxyribose-phosphate 97.6 0.00094 2E-08 59.6 12.2 32 220-253 178-209 (221)
237 PF01645 Glu_synthase: Conserv 97.6 0.00022 4.8E-09 68.0 8.3 36 221-258 274-309 (368)
238 PRK07998 gatY putative fructos 97.6 0.0074 1.6E-07 55.8 17.7 179 41-257 24-234 (283)
239 PRK00748 1-(5-phosphoribosyl)- 97.6 0.0006 1.3E-08 60.9 10.4 59 208-271 61-119 (233)
240 PRK13958 N-(5'-phosphoribosyl) 97.6 0.029 6.4E-07 49.5 20.8 183 42-274 8-205 (207)
241 PF01729 QRPTase_C: Quinolinat 97.6 0.00062 1.3E-08 58.2 9.5 94 126-258 66-161 (169)
242 PRK06096 molybdenum transport 97.5 0.0026 5.6E-08 58.8 14.1 121 98-258 131-269 (284)
243 PF01791 DeoC: DeoC/LacD famil 97.5 0.00078 1.7E-08 60.6 10.3 163 46-257 23-235 (236)
244 PRK14024 phosphoribosyl isomer 97.5 0.00099 2.1E-08 60.2 10.5 60 207-271 61-120 (241)
245 TIGR03572 WbuZ glycosyl amidat 97.5 0.00096 2.1E-08 59.7 10.4 52 207-262 60-111 (232)
246 PRK09427 bifunctional indole-3 97.5 0.023 5E-07 56.0 20.6 181 42-274 264-453 (454)
247 COG2513 PrpB PEP phosphonomuta 97.5 0.0096 2.1E-07 54.6 16.6 179 39-257 22-239 (289)
248 cd02809 alpha_hydroxyacid_oxid 97.5 0.0033 7.1E-08 58.6 13.9 111 46-166 133-256 (299)
249 TIGR01182 eda Entner-Doudoroff 97.4 0.005 1.1E-07 54.2 13.8 103 104-251 23-127 (204)
250 TIGR00126 deoC deoxyribose-pho 97.4 0.0016 3.5E-08 57.7 10.6 29 221-251 175-203 (211)
251 PRK04128 1-(5-phosphoribosyl)- 97.4 0.00049 1.1E-08 61.7 7.5 50 208-262 60-109 (228)
252 cd04725 OMP_decarboxylase_like 97.4 0.01 2.2E-07 52.8 15.5 43 221-267 163-215 (216)
253 PRK06552 keto-hydroxyglutarate 97.4 0.0097 2.1E-07 52.8 14.9 124 83-251 6-135 (213)
254 PRK13585 1-(5-phosphoribosyl)- 97.4 0.0014 3E-08 59.0 9.8 60 208-272 63-122 (241)
255 TIGR01304 IMP_DH_rel_2 IMP deh 97.4 0.0027 5.8E-08 60.9 12.1 73 149-253 145-217 (369)
256 PRK01033 imidazole glycerol ph 97.4 0.0018 4E-08 59.0 10.6 61 207-272 60-120 (258)
257 PRK07114 keto-hydroxyglutarate 97.3 0.01 2.2E-07 53.0 14.6 126 81-251 6-138 (222)
258 PRK05718 keto-hydroxyglutarate 97.3 0.011 2.3E-07 52.5 14.7 124 83-251 8-134 (212)
259 PRK08385 nicotinate-nucleotide 97.3 0.0022 4.8E-08 59.1 10.5 94 126-258 169-265 (278)
260 PRK06015 keto-hydroxyglutarate 97.3 0.0076 1.6E-07 52.9 13.3 102 105-251 20-123 (201)
261 PRK07896 nicotinate-nucleotide 97.3 0.0025 5.4E-08 59.0 10.7 94 126-258 186-280 (289)
262 PRK11320 prpB 2-methylisocitra 97.3 0.046 9.9E-07 50.8 19.0 174 40-257 22-239 (292)
263 COG0149 TpiA Triosephosphate i 97.3 0.0035 7.7E-08 56.6 11.3 47 220-269 201-248 (251)
264 cd00959 DeoC 2-deoxyribose-5-p 97.3 0.0025 5.5E-08 56.0 10.3 28 220-249 173-200 (203)
265 PF01884 PcrB: PcrB family; I 97.3 0.00024 5.3E-09 63.4 3.7 46 210-257 171-216 (230)
266 cd00377 ICL_PEPM Members of th 97.3 0.048 1E-06 49.3 18.7 178 39-257 13-231 (243)
267 KOG2333 Uncharacterized conser 97.3 0.0034 7.3E-08 61.0 11.5 136 54-262 345-493 (614)
268 PRK06978 nicotinate-nucleotide 97.3 0.0041 9E-08 57.6 11.7 93 126-259 192-284 (294)
269 PF01081 Aldolase: KDPG and KH 97.2 0.0052 1.1E-07 53.8 11.7 119 87-250 5-126 (196)
270 TIGR00007 phosphoribosylformim 97.2 0.0027 5.8E-08 56.7 10.3 60 208-272 59-118 (230)
271 PLN02411 12-oxophytodienoate r 97.2 0.0043 9.3E-08 60.1 12.4 56 211-276 303-359 (391)
272 TIGR01740 pyrF orotidine 5'-ph 97.2 0.0086 1.9E-07 53.0 13.4 112 154-268 71-212 (213)
273 PRK12858 tagatose 1,6-diphosph 97.2 0.003 6.5E-08 59.9 11.0 49 211-261 231-285 (340)
274 PRK09016 quinolinate phosphori 97.2 0.0047 1E-07 57.3 11.5 91 127-258 196-286 (296)
275 TIGR02317 prpB methylisocitrat 97.2 0.026 5.6E-07 52.3 16.4 176 41-257 19-234 (285)
276 COG0107 HisF Imidazoleglycerol 97.2 0.0023 5E-08 56.7 8.7 51 208-262 61-111 (256)
277 COG0274 DeoC Deoxyribose-phosp 97.2 0.0027 5.8E-08 56.2 9.1 31 221-253 183-213 (228)
278 PRK06559 nicotinate-nucleotide 97.2 0.0053 1.2E-07 56.7 11.5 92 126-258 183-275 (290)
279 PF04131 NanE: Putative N-acet 97.1 0.011 2.5E-07 51.0 12.6 110 45-167 54-174 (192)
280 PLN02363 phosphoribosylanthran 97.1 0.16 3.4E-06 46.4 20.6 182 42-273 54-252 (256)
281 cd00956 Transaldolase_FSA Tran 97.0 0.1 2.2E-06 46.2 18.1 177 39-257 3-190 (211)
282 PRK02227 hypothetical protein; 97.0 0.2 4.3E-06 45.0 19.7 186 38-259 3-215 (238)
283 cd02922 FCB2_FMN Flavocytochro 97.0 0.019 4.1E-07 54.7 14.0 86 80-166 201-300 (344)
284 PRK05567 inosine 5'-monophosph 97.0 0.037 8E-07 55.2 16.6 40 210-252 257-297 (486)
285 PF13714 PEP_mutase: Phosphoen 97.0 0.036 7.9E-07 50.0 14.8 172 39-257 13-224 (238)
286 PRK06106 nicotinate-nucleotide 96.9 0.011 2.4E-07 54.6 11.2 91 127-258 181-272 (281)
287 PRK06543 nicotinate-nucleotide 96.9 0.012 2.6E-07 54.3 11.4 91 127-258 180-271 (281)
288 PRK13587 1-(5-phosphoribosyl)- 96.9 0.0029 6.2E-08 57.0 7.2 51 208-262 63-113 (234)
289 cd06556 ICL_KPHMT Members of t 96.9 0.038 8.3E-07 49.9 14.4 95 39-134 16-122 (240)
290 COG0800 Eda 2-keto-3-deoxy-6-p 96.9 0.025 5.5E-07 49.7 12.6 123 83-250 6-131 (211)
291 PRK12738 kbaY tagatose-bisphos 96.9 0.21 4.5E-06 46.3 19.3 193 41-273 24-248 (286)
292 TIGR01858 tag_bisphos_ald clas 96.8 0.22 4.8E-06 46.1 18.8 193 41-273 22-246 (282)
293 PRK10128 2-keto-3-deoxy-L-rham 96.8 0.13 2.8E-06 47.2 17.2 89 37-135 21-111 (267)
294 PLN02716 nicotinate-nucleotide 96.8 0.018 4E-07 53.6 11.6 98 126-257 186-295 (308)
295 PRK10558 alpha-dehydro-beta-de 96.8 0.11 2.4E-06 47.3 16.6 86 37-134 22-111 (256)
296 PRK12737 gatY tagatose-bisphos 96.8 0.3 6.6E-06 45.2 19.4 182 41-257 24-237 (284)
297 COG0106 HisA Phosphoribosylfor 96.7 0.015 3.3E-07 52.1 10.3 52 208-263 62-113 (241)
298 COG0284 PyrF Orotidine-5'-phos 96.7 0.018 3.9E-07 52.0 10.9 117 154-273 84-235 (240)
299 TIGR03239 GarL 2-dehydro-3-deo 96.7 0.1 2.2E-06 47.5 15.7 85 37-133 15-103 (249)
300 CHL00162 thiG thiamin biosynth 96.7 0.016 3.6E-07 52.2 10.2 77 36-119 136-216 (267)
301 TIGR01919 hisA-trpF 1-(5-phosp 96.7 0.0056 1.2E-07 55.4 7.4 53 207-263 60-112 (243)
302 PRK07807 inosine 5-monophospha 96.7 0.11 2.3E-06 51.7 16.9 40 210-252 256-296 (479)
303 cd00452 KDPG_aldolase KDPG and 96.7 0.065 1.4E-06 46.5 13.7 103 104-251 19-123 (190)
304 PRK06843 inosine 5-monophospha 96.7 0.038 8.2E-07 53.6 13.3 67 149-252 155-222 (404)
305 COG0157 NadC Nicotinate-nucleo 96.7 0.027 5.8E-07 51.5 11.5 94 126-258 174-268 (280)
306 TIGR02129 hisA_euk phosphoribo 96.6 0.0024 5.2E-08 57.9 4.5 47 209-258 64-110 (253)
307 TIGR01305 GMP_reduct_1 guanosi 96.6 0.025 5.4E-07 53.2 11.3 124 91-252 44-178 (343)
308 cd00381 IMPDH IMPDH: The catal 96.6 0.066 1.4E-06 50.6 14.5 124 91-252 33-163 (325)
309 PF05690 ThiG: Thiazole biosyn 96.6 0.013 2.8E-07 52.2 8.9 77 36-119 122-202 (247)
310 TIGR01306 GMP_reduct_2 guanosi 96.6 0.038 8.2E-07 52.0 12.3 125 90-252 32-165 (321)
311 COG3836 HpcH 2,4-dihydroxyhept 96.6 0.18 3.8E-06 45.1 15.6 187 36-256 19-240 (255)
312 cd04723 HisA_HisF Phosphoribos 96.6 0.019 4.1E-07 51.6 9.9 49 207-257 64-112 (233)
313 TIGR01302 IMP_dehydrog inosine 96.6 0.034 7.4E-07 54.9 12.5 113 45-167 226-357 (450)
314 PRK05283 deoxyribose-phosphate 96.6 0.02 4.4E-07 52.1 9.9 26 221-248 195-220 (257)
315 PRK14114 1-(5-phosphoribosyl)- 96.6 0.019 4.1E-07 51.9 9.8 50 208-262 61-110 (241)
316 KOG1799 Dihydropyrimidine dehy 96.5 0.0036 7.8E-08 58.5 5.0 69 222-294 357-425 (471)
317 TIGR00875 fsa_talC_mipB fructo 96.5 0.49 1.1E-05 42.0 18.2 174 39-257 4-190 (213)
318 PRK09195 gatY tagatose-bisphos 96.5 0.52 1.1E-05 43.7 18.9 182 41-257 24-237 (284)
319 PF00478 IMPDH: IMP dehydrogen 96.5 0.021 4.6E-07 54.2 10.0 124 91-252 36-177 (352)
320 TIGR00167 cbbA ketose-bisphosp 96.5 0.62 1.3E-05 43.3 19.4 183 41-257 24-241 (288)
321 PRK05096 guanosine 5'-monophos 96.4 0.04 8.6E-07 51.9 11.4 124 91-252 45-179 (346)
322 cd00947 TBP_aldolase_IIB Tagat 96.4 0.64 1.4E-05 42.9 19.2 194 41-273 19-242 (276)
323 PRK05458 guanosine 5'-monophos 96.4 0.055 1.2E-06 51.0 12.4 123 91-252 36-168 (326)
324 PRK08610 fructose-bisphosphate 96.4 0.77 1.7E-05 42.6 19.7 194 41-273 24-249 (286)
325 cd04728 ThiG Thiazole synthase 96.4 0.036 7.9E-07 49.8 10.3 70 43-119 132-202 (248)
326 PRK00208 thiG thiazole synthas 96.4 0.039 8.4E-07 49.7 10.5 72 43-120 132-203 (250)
327 PF00215 OMPdecase: Orotidine 96.4 0.028 6.1E-07 50.1 9.7 39 229-268 187-226 (226)
328 COG5564 Predicted TIM-barrel e 96.3 0.2 4.4E-06 44.2 14.4 150 92-263 87-261 (276)
329 TIGR02319 CPEP_Pphonmut carbox 96.3 0.17 3.7E-06 47.0 15.0 174 40-257 21-238 (294)
330 KOG1436 Dihydroorotate dehydro 96.3 0.0018 4E-08 59.7 1.9 77 211-291 319-397 (398)
331 PRK07709 fructose-bisphosphate 96.3 0.89 1.9E-05 42.2 19.6 194 41-273 24-249 (285)
332 COG1411 Uncharacterized protei 96.3 0.008 1.7E-07 52.1 5.5 57 206-264 166-222 (229)
333 PF00977 His_biosynth: Histidi 96.3 0.005 1.1E-07 55.2 4.4 50 209-262 61-110 (229)
334 PRK12857 fructose-1,6-bisphosp 96.3 0.87 1.9E-05 42.2 19.2 182 41-257 24-237 (284)
335 PRK13586 1-(5-phosphoribosyl)- 96.3 0.046 9.9E-07 49.1 10.6 51 208-262 60-110 (232)
336 PF00697 PRAI: N-(5'phosphorib 96.2 0.037 8.1E-07 48.4 9.2 169 42-258 6-182 (197)
337 PF04476 DUF556: Protein of un 96.1 0.98 2.1E-05 40.5 20.1 185 39-259 4-215 (235)
338 PLN02617 imidazole glycerol ph 96.1 0.038 8.2E-07 55.6 10.0 47 210-258 303-360 (538)
339 TIGR02311 HpaI 2,4-dihydroxyhe 96.1 0.36 7.9E-06 43.8 15.5 87 37-135 15-105 (249)
340 PRK11750 gltB glutamate syntha 96.1 0.026 5.6E-07 62.1 9.1 120 113-258 964-1102(1485)
341 COG0069 GltB Glutamate synthas 96.0 0.036 7.7E-07 54.6 9.1 120 113-257 271-408 (485)
342 PRK01362 putative translaldola 96.0 0.92 2E-05 40.3 17.4 174 39-257 4-190 (214)
343 PRK05835 fructose-bisphosphate 96.0 1.2 2.5E-05 41.8 18.7 185 41-257 23-260 (307)
344 PLN02979 glycolate oxidase 96.0 0.063 1.4E-06 51.2 10.5 86 81-167 212-308 (366)
345 COG2022 ThiG Uncharacterized e 96.0 0.05 1.1E-06 48.4 9.1 77 36-119 129-209 (262)
346 TIGR01303 IMP_DH_rel_1 IMP deh 96.0 0.11 2.3E-06 51.7 12.5 114 45-168 227-359 (475)
347 PRK07455 keto-hydroxyglutarate 96.0 0.28 6.1E-06 42.5 13.7 125 82-251 4-131 (187)
348 cd00331 IGPS Indole-3-glycerol 96.0 0.067 1.5E-06 47.2 10.1 57 210-272 61-117 (217)
349 PRK09140 2-dehydro-3-deoxy-6-p 96.0 0.3 6.6E-06 43.0 14.0 103 104-251 25-130 (206)
350 TIGR02321 Pphn_pyruv_hyd phosp 95.9 0.36 7.8E-06 44.9 14.9 73 42-119 22-108 (290)
351 PLN02493 probable peroxisomal 95.9 0.074 1.6E-06 51.0 10.5 45 207-254 210-254 (367)
352 PRK00042 tpiA triosephosphate 95.9 0.17 3.6E-06 46.0 12.3 42 221-265 203-245 (250)
353 PRK13957 indole-3-glycerol-pho 95.9 0.16 3.4E-06 46.1 11.9 88 207-301 88-183 (247)
354 TIGR00419 tim triosephosphate 95.8 0.23 4.9E-06 43.8 12.5 149 81-258 41-204 (205)
355 cd04736 MDH_FMN Mandelate dehy 95.7 0.11 2.3E-06 49.8 10.7 85 81-167 225-319 (361)
356 KOG2334 tRNA-dihydrouridine sy 95.6 0.07 1.5E-06 51.3 9.0 126 61-258 111-248 (477)
357 PF04309 G3P_antiterm: Glycero 95.6 0.059 1.3E-06 46.2 7.8 40 211-252 130-169 (175)
358 PLN02446 (5-phosphoribosyl)-5- 95.6 0.031 6.6E-07 51.0 6.2 45 209-257 72-116 (262)
359 PRK11197 lldD L-lactate dehydr 95.6 0.096 2.1E-06 50.5 9.9 85 82-167 235-330 (381)
360 cd06557 KPHMT-like Ketopantoat 95.5 0.22 4.8E-06 45.4 11.5 95 39-134 16-124 (254)
361 PRK13803 bifunctional phosphor 95.5 2.8 6.1E-05 43.1 20.7 185 42-274 10-214 (610)
362 PRK07084 fructose-bisphosphate 95.5 2.2 4.7E-05 40.3 18.2 200 41-273 30-284 (321)
363 COG0329 DapA Dihydrodipicolina 95.4 2.3 5E-05 39.6 21.3 183 46-275 29-228 (299)
364 TIGR00284 dihydropteroate synt 95.4 0.67 1.5E-05 46.3 15.3 84 46-138 169-252 (499)
365 PRK04180 pyridoxal biosynthesi 95.3 0.52 1.1E-05 43.5 13.2 121 45-180 86-249 (293)
366 TIGR02320 PEP_mutase phosphoen 95.2 0.63 1.4E-05 43.1 13.7 176 41-257 15-245 (285)
367 PF01116 F_bP_aldolase: Fructo 95.2 0.92 2E-05 42.1 14.8 190 47-274 33-252 (287)
368 TIGR01769 GGGP geranylgeranylg 95.1 0.12 2.7E-06 45.5 8.5 65 47-119 139-203 (205)
369 TIGR02319 CPEP_Pphonmut carbox 95.1 0.2 4.4E-06 46.6 10.2 121 46-167 96-234 (294)
370 TIGR00736 nifR3_rel_arch TIM-b 95.1 0.082 1.8E-06 47.5 7.3 83 28-119 135-218 (231)
371 PRK13396 3-deoxy-7-phosphohept 95.1 2.5 5.4E-05 40.4 17.5 174 46-254 119-308 (352)
372 TIGR03151 enACPred_II putative 95.0 0.11 2.4E-06 48.6 8.5 85 29-119 100-188 (307)
373 PRK11840 bifunctional sulfur c 95.0 0.26 5.5E-06 46.3 10.5 78 36-119 196-276 (326)
374 PRK08673 3-deoxy-7-phosphohept 94.9 2.2 4.7E-05 40.5 16.8 173 46-256 111-301 (335)
375 PRK13397 3-deoxy-7-phosphohept 94.9 2.9 6.2E-05 38.0 17.3 177 46-263 33-226 (250)
376 PRK12656 fructose-6-phosphate 94.9 2.7 5.8E-05 37.5 17.4 175 39-257 4-194 (222)
377 PRK14565 triosephosphate isome 94.9 0.42 9.1E-06 43.1 11.2 40 221-263 189-229 (237)
378 TIGR01361 DAHP_synth_Bsub phos 94.8 1.8 3.8E-05 39.6 15.5 141 81-256 78-233 (260)
379 cd00311 TIM Triosephosphate is 94.8 0.37 8.1E-06 43.6 10.9 34 221-257 199-233 (242)
380 PRK00311 panB 3-methyl-2-oxobu 94.8 0.7 1.5E-05 42.3 12.7 95 39-134 19-127 (264)
381 TIGR00343 pyridoxal 5'-phospha 94.8 0.6 1.3E-05 43.0 12.1 105 104-250 20-139 (287)
382 PRK11320 prpB 2-methylisocitra 94.8 0.31 6.8E-06 45.3 10.5 118 46-166 97-234 (292)
383 PRK14567 triosephosphate isome 94.8 0.76 1.6E-05 41.8 12.7 37 221-260 202-239 (253)
384 PRK01130 N-acetylmannosamine-6 94.7 0.32 7E-06 43.0 10.2 89 38-129 122-211 (221)
385 PRK11613 folP dihydropteroate 94.7 0.97 2.1E-05 41.8 13.4 89 46-142 42-138 (282)
386 PRK10415 tRNA-dihydrouridine s 94.6 0.19 4E-06 47.4 8.7 79 46-129 153-233 (321)
387 COG2089 SpsE Sialic acid synth 94.5 1.1 2.3E-05 42.1 13.2 111 137-303 101-217 (347)
388 cd00003 PNPsynthase Pyridoxine 94.5 3.4 7.3E-05 37.1 17.3 173 46-257 25-216 (234)
389 COG3684 LacD Tagatose-1,6-bisp 94.5 0.58 1.3E-05 42.4 11.1 42 215-257 224-268 (306)
390 KOG4013 Predicted Cu2+ homeost 94.4 0.61 1.3E-05 40.5 10.5 70 43-119 17-99 (255)
391 TIGR00559 pdxJ pyridoxine 5'-p 94.3 3.8 8.2E-05 36.8 17.0 173 46-257 25-217 (237)
392 PRK12595 bifunctional 3-deoxy- 94.3 4.6 0.0001 38.7 17.6 173 46-255 136-325 (360)
393 PRK12653 fructose-6-phosphate 94.3 3.8 8.2E-05 36.5 17.9 173 39-256 4-191 (220)
394 PRK12655 fructose-6-phosphate 94.3 3.8 8.2E-05 36.5 16.8 174 39-257 4-192 (220)
395 cd02812 PcrB_like PcrB_like pr 94.2 0.37 8E-06 42.9 9.2 69 47-126 140-210 (219)
396 cd01571 NAPRTase_B Nicotinate 94.2 0.43 9.4E-06 44.6 10.1 31 227-258 249-279 (302)
397 TIGR02317 prpB methylisocitrat 94.2 0.5 1.1E-05 43.8 10.4 119 46-167 92-230 (285)
398 cd03174 DRE_TIM_metallolyase D 94.2 2.2 4.8E-05 38.4 14.6 166 46-250 23-220 (265)
399 cd04727 pdxS PdxS is a subunit 94.2 0.91 2E-05 41.8 11.8 109 103-255 17-140 (283)
400 PRK05265 pyridoxine 5'-phospha 94.1 4.2 9.2E-05 36.6 17.6 172 46-257 28-218 (239)
401 PRK13399 fructose-1,6-bisphosp 94.1 5.5 0.00012 38.0 17.4 188 41-257 24-282 (347)
402 PTZ00333 triosephosphate isome 94.1 1.5 3.2E-05 40.0 13.1 34 221-257 207-241 (255)
403 COG2513 PrpB PEP phosphonomuta 94.0 0.45 9.7E-06 43.9 9.5 120 46-166 97-234 (289)
404 COG2876 AroA 3-deoxy-D-arabino 93.9 2.5 5.4E-05 38.6 13.8 177 46-262 63-255 (286)
405 PRK13398 3-deoxy-7-phosphohept 93.9 5.1 0.00011 36.7 17.3 174 46-256 45-235 (266)
406 cd04729 NanE N-acetylmannosami 93.8 0.45 9.7E-06 42.1 9.1 80 39-122 127-208 (219)
407 cd00958 DhnA Class I fructose- 93.8 1.2 2.6E-05 39.7 11.9 111 46-166 80-214 (235)
408 PRK11572 copper homeostasis pr 93.7 0.47 1E-05 43.0 9.1 77 144-252 6-93 (248)
409 COG3010 NanE Putative N-acetyl 93.7 0.73 1.6E-05 40.5 9.8 93 36-133 128-222 (229)
410 PLN02429 triosephosphate isome 93.6 1 2.2E-05 42.3 11.2 41 221-264 263-304 (315)
411 TIGR01521 FruBisAldo_II_B fruc 93.6 6.2 0.00014 37.6 16.6 188 41-257 22-280 (347)
412 PF03932 CutC: CutC family; I 93.5 0.35 7.7E-06 42.5 7.7 77 144-252 5-92 (201)
413 PF01070 FMN_dh: FMN-dependent 93.5 0.2 4.3E-06 47.9 6.6 63 208-273 212-278 (356)
414 cd00408 DHDPS-like Dihydrodipi 93.4 6.1 0.00013 36.1 20.5 83 46-135 22-117 (281)
415 PRK14905 triosephosphate isome 93.3 1.1 2.4E-05 42.9 11.2 49 221-272 213-262 (355)
416 PF03102 NeuB: NeuB family; I 93.3 0.76 1.6E-05 41.6 9.6 113 137-303 67-183 (241)
417 PRK12331 oxaloacetate decarbox 93.2 9.4 0.0002 37.8 19.5 184 46-274 30-251 (448)
418 PRK05500 bifunctional orotidin 93.2 1.8 4E-05 43.0 13.0 165 91-278 87-264 (477)
419 cd08205 RuBisCO_IV_RLP Ribulos 93.1 7.6 0.00017 37.3 16.7 45 222-270 319-366 (367)
420 COG4981 Enoyl reductase domain 93.0 1.1 2.4E-05 44.7 10.9 199 16-259 23-260 (717)
421 TIGR00737 nifR3_yhdG putative 92.9 0.49 1.1E-05 44.4 8.3 82 45-132 150-234 (319)
422 cd04722 TIM_phosphate_binding 92.9 1.7 3.7E-05 36.5 11.0 110 48-166 77-199 (200)
423 TIGR00222 panB 3-methyl-2-oxob 92.7 3.3 7.2E-05 37.9 13.0 101 41-143 21-133 (263)
424 TIGR03569 NeuB_NnaB N-acetylne 92.6 9.5 0.00021 36.1 17.7 128 85-248 82-219 (329)
425 PF00701 DHDPS: Dihydrodipicol 92.6 8.3 0.00018 35.4 18.2 81 46-134 26-120 (289)
426 cd00377 ICL_PEPM Members of th 92.6 1 2.2E-05 40.8 9.5 119 46-167 88-227 (243)
427 cd04740 DHOD_1B_like Dihydroor 92.5 0.95 2.1E-05 41.9 9.5 74 46-119 170-258 (296)
428 PRK04147 N-acetylneuraminate l 92.4 8.7 0.00019 35.5 15.9 81 105-185 28-126 (293)
429 PRK10550 tRNA-dihydrouridine s 92.4 0.5 1.1E-05 44.4 7.5 84 45-133 151-237 (312)
430 cd04737 LOX_like_FMN L-Lactate 92.3 0.52 1.1E-05 45.0 7.7 62 208-272 208-273 (351)
431 cd02911 arch_FMN Archeal FMN-b 92.3 0.88 1.9E-05 40.9 8.8 78 29-119 141-218 (233)
432 COG0329 DapA Dihydrodipicolina 92.2 2.1 4.6E-05 39.9 11.5 92 152-273 31-127 (299)
433 PF04476 DUF556: Protein of un 92.2 8.4 0.00018 34.6 17.4 66 103-168 9-89 (235)
434 cd08210 RLP_RrRLP Ribulose bis 92.2 11 0.00025 36.1 17.4 47 222-272 315-364 (364)
435 TIGR02708 L_lactate_ox L-lacta 92.1 0.65 1.4E-05 44.6 8.0 62 208-272 215-280 (367)
436 PRK07259 dihydroorotate dehydr 92.1 0.95 2.1E-05 42.0 9.0 74 46-119 173-261 (301)
437 COG5016 Pyruvate/oxaloacetate 92.0 2.8 6E-05 40.5 11.9 160 82-274 66-253 (472)
438 cd02801 DUS_like_FMN Dihydrour 91.9 0.8 1.7E-05 40.5 8.0 81 46-131 142-224 (231)
439 TIGR03326 rubisco_III ribulose 91.9 13 0.00029 36.2 17.4 54 222-279 337-393 (412)
440 cd03332 LMO_FMN L-Lactate 2-mo 91.8 0.35 7.6E-06 46.7 5.9 43 207-252 239-281 (383)
441 PRK00366 ispG 4-hydroxy-3-meth 91.8 6.2 0.00013 37.6 13.9 64 104-168 45-110 (360)
442 TIGR02127 pyrF_sub2 orotidine 91.8 6.2 0.00013 36.1 13.8 53 212-266 200-258 (261)
443 PLN02424 ketopantoate hydroxym 91.8 11 0.00024 35.6 15.5 81 39-119 39-132 (332)
444 PF01487 DHquinase_I: Type I 3 91.8 0.92 2E-05 40.2 8.2 113 48-166 16-150 (224)
445 TIGR01037 pyrD_sub1_fam dihydr 91.7 0.89 1.9E-05 42.2 8.4 74 46-119 173-261 (300)
446 cd00951 KDGDH 5-dehydro-4-deox 91.7 11 0.00024 34.8 20.8 83 46-135 25-119 (289)
447 cd02940 DHPD_FMN Dihydropyrimi 91.7 0.81 1.8E-05 42.6 8.0 74 46-119 184-279 (299)
448 PRK06256 biotin synthase; Vali 91.6 12 0.00026 35.2 17.4 51 221-272 270-320 (336)
449 PLN02535 glycolate oxidase 91.6 0.4 8.6E-06 46.0 6.0 44 207-253 209-252 (364)
450 PF13714 PEP_mutase: Phosphoen 91.6 0.81 1.7E-05 41.3 7.6 115 46-167 89-220 (238)
451 PRK12581 oxaloacetate decarbox 91.6 16 0.00034 36.4 18.3 205 46-290 39-281 (468)
452 COG0502 BioB Biotin synthase a 91.5 11 0.00024 35.8 15.2 69 46-119 91-159 (335)
453 PRK12376 putative translaldola 91.4 11 0.00023 34.1 14.7 175 38-256 8-203 (236)
454 COG0269 SgbH 3-hexulose-6-phos 91.4 7.7 0.00017 34.4 13.2 111 47-168 72-194 (217)
455 cd00956 Transaldolase_FSA Tran 91.3 2.8 6E-05 37.1 10.7 84 81-166 91-185 (211)
456 COG1954 GlpP Glycerol-3-phosph 91.2 1 2.2E-05 38.4 7.3 39 210-250 133-171 (181)
457 PRK05198 2-dehydro-3-deoxyphos 91.2 5.5 0.00012 36.4 12.4 50 38-101 84-133 (264)
458 PRK07107 inosine 5-monophospha 91.1 0.9 2E-05 45.5 8.2 42 210-252 271-312 (502)
459 PRK00278 trpC indole-3-glycero 91.0 3.7 8E-05 37.5 11.5 85 209-300 99-191 (260)
460 TIGR01362 KDO8P_synth 3-deoxy- 91.0 5.8 0.00013 36.1 12.4 50 38-101 76-125 (258)
461 PRK15452 putative protease; Pr 90.9 6.6 0.00014 38.8 13.8 47 210-256 98-145 (443)
462 PF03060 NMO: Nitronate monoox 90.9 0.65 1.4E-05 43.9 6.6 87 28-119 126-217 (330)
463 PRK09196 fructose-1,6-bisphosp 90.7 16 0.00034 34.9 18.9 188 41-257 24-282 (347)
464 TIGR00640 acid_CoA_mut_C methy 90.7 4 8.7E-05 33.3 10.3 53 212-272 73-127 (132)
465 KOG0538 Glycolate oxidase [Ene 90.7 0.4 8.7E-06 44.5 4.7 64 208-274 210-277 (363)
466 cd04730 NPD_like 2-Nitropropan 90.5 4.7 0.0001 35.7 11.6 75 39-119 106-183 (236)
467 PF00218 IGPS: Indole-3-glycer 90.5 2.3 5E-05 38.8 9.5 86 209-301 97-190 (254)
468 COG0042 tRNA-dihydrouridine sy 90.4 1.1 2.5E-05 42.2 7.7 80 44-129 154-237 (323)
469 PRK08508 biotin synthase; Prov 90.3 14 0.00031 33.9 15.3 39 81-119 78-117 (279)
470 TIGR01768 GGGP-family geranylg 90.2 2.1 4.6E-05 38.2 8.8 48 77-124 163-212 (223)
471 TIGR00734 hisAF_rel hisA/hisF 90.2 1.9 4.1E-05 38.4 8.6 68 46-120 145-212 (221)
472 TIGR00676 fadh2 5,10-methylene 90.0 8.1 0.00018 35.4 12.9 114 46-166 19-164 (272)
473 COG1465 Predicted alternative 89.9 17 0.00036 33.9 14.6 45 221-275 145-192 (376)
474 PF03437 BtpA: BtpA family; I 89.8 16 0.00034 33.4 14.6 64 105-169 33-113 (254)
475 TIGR01496 DHPS dihydropteroate 89.6 2 4.3E-05 39.2 8.4 91 46-139 27-120 (257)
476 PLN02561 triosephosphate isome 89.6 7.7 0.00017 35.4 12.1 34 221-257 204-238 (253)
477 TIGR02320 PEP_mutase phosphoen 89.6 3.4 7.4E-05 38.3 10.0 120 46-166 96-240 (285)
478 COG2070 Dioxygenases related t 89.5 0.84 1.8E-05 43.4 6.1 88 27-119 116-211 (336)
479 cd00516 PRTase_typeII Phosphor 89.4 3.3 7.2E-05 37.9 9.9 31 227-258 243-273 (281)
480 PRK09197 fructose-bisphosphate 89.4 20 0.00044 34.2 18.8 58 209-272 228-294 (350)
481 PRK13384 delta-aminolevulinic 89.3 19 0.00041 33.8 18.7 96 46-143 65-192 (322)
482 cd08207 RLP_NonPhot Ribulose b 89.3 23 0.00049 34.6 17.9 54 222-279 333-390 (406)
483 cd00945 Aldolase_Class_I Class 89.2 7.5 0.00016 32.9 11.4 115 46-164 69-199 (201)
484 PRK08662 nicotinate phosphorib 89.0 5 0.00011 38.2 11.0 30 227-258 265-294 (343)
485 PRK09283 delta-aminolevulinic 89.0 20 0.00044 33.7 18.9 91 46-138 63-184 (323)
486 PF00809 Pterin_bind: Pterin b 88.9 1.2 2.6E-05 39.3 6.3 88 46-136 23-115 (210)
487 PF03740 PdxJ: Pyridoxal phosp 88.8 6.5 0.00014 35.4 10.8 169 46-257 26-219 (239)
488 KOG2335 tRNA-dihydrouridine sy 88.8 1.9 4.1E-05 40.9 7.7 74 44-121 157-233 (358)
489 PLN02858 fructose-bisphosphate 88.8 25 0.00054 39.8 17.6 175 48-257 1131-1336(1378)
490 PRK08318 dihydropyrimidine deh 88.6 1.6 3.4E-05 42.6 7.5 77 46-122 184-284 (420)
491 cd00739 DHPS DHPS subgroup of 88.4 2.8 6.1E-05 38.2 8.6 89 46-137 28-120 (257)
492 COG0826 Collagenase and relate 88.4 15 0.00032 35.1 13.7 47 210-256 101-148 (347)
493 PRK04169 geranylgeranylglycery 88.3 3.3 7.1E-05 37.2 8.7 42 78-119 169-211 (232)
494 PRK07695 transcriptional regul 88.2 4.5 9.8E-05 35.1 9.5 75 41-119 101-175 (201)
495 cd00408 DHDPS-like Dihydrodipi 88.1 8.2 0.00018 35.2 11.5 91 152-272 24-119 (281)
496 PRK07709 fructose-bisphosphate 87.9 3.1 6.7E-05 38.6 8.5 70 42-118 155-230 (285)
497 PF03328 HpcH_HpaI: HpcH/HpaI 87.9 3.8 8.2E-05 36.2 8.9 125 37-165 3-149 (221)
498 TIGR01859 fruc_bis_ald_ fructo 87.7 3.1 6.7E-05 38.5 8.4 78 41-122 151-232 (282)
499 TIGR00612 ispG_gcpE 1-hydroxy- 87.6 13 0.00028 35.2 12.4 64 104-168 37-102 (346)
500 PRK06806 fructose-bisphosphate 87.6 3.3 7.1E-05 38.3 8.5 75 40-118 150-227 (281)
No 1
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.4e-49 Score=336.95 Aligned_cols=295 Identities=82% Similarity=1.261 Sum_probs=284.2
Q ss_pred eeeec-cCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcc
Q 021609 16 ITETK-KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIP 94 (310)
Q Consensus 16 ~~~~~-~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iP 94 (310)
+++.+ +++|+++.|+.|+|++|.|+++.++++|+.++++||.+++.|++.|.++|..+|.++|.++..+++|++++.+|
T Consensus 1 ~t~a~~k~pfsvK~GLAQmLkGGvImdVv~~eQA~iAE~aGACaVmalervPadiR~~GgV~RMsDP~mIKei~~aVsiP 80 (296)
T KOG1606|consen 1 ITEAKFKSPFSVKVGLAQMLKGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPRMIKEIKNAVSIP 80 (296)
T ss_pred CccccccCCchhhHHHHHHhcCCeEEEecCHHHHHHHHhcCcceEeeeccCCHhHHhcCCeeecCCHHHHHHHHHhccch
Confidence 35666 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcch
Q 021609 95 VMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNI 174 (310)
Q Consensus 95 v~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~ 174 (310)
+..|.+++++-.+|++++.|+|++..+..+++.+....++++++.+++.++|++.-|+.|-+..|+.+|.+.|..+||++
T Consensus 81 VMAk~RiGHFVEAQIlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v 160 (296)
T KOG1606|consen 81 VMAKVRIGHFVEAQILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDV 160 (296)
T ss_pred hhhhhhhhhhhHHHHHHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcH
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 175 IEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 175 ~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
.++++++|+....++.+...++|+++.|++....|++++++.++..++||+-+|+|||.||.|+.-++++|||||.|||.
T Consensus 161 ~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSg 240 (296)
T KOG1606|consen 161 SEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSG 240 (296)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHcCCCceEEecccCcCChhHHHHHHHcCCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCccchhhhhcccCC
Q 021609 255 VFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 310 (310)
Q Consensus 255 i~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (310)
+++++||.+.++.+++++.+|.+|+.+.++++-+|++|.|++++++++++|+++|+
T Consensus 241 iFks~dP~k~a~aiVqAvthy~dp~~L~evS~~Lg~aM~g~~i~~~~~~~f~ngs~ 296 (296)
T KOG1606|consen 241 IFKSGDPVKRARAIVQAVTHYDDPAKLAEVSSGLGEAMVGISIQSIKEARFANGSR 296 (296)
T ss_pred cccCCCHHHHHHHHHHHHHccCCHHHHHHHhccHHHHhhcccccchhhhhccccCC
Confidence 99999999999999999999999999999999999999999999999999999985
No 2
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=100.00 E-value=2.2e-44 Score=322.94 Aligned_cols=283 Identities=68% Similarity=1.052 Sum_probs=255.7
Q ss_pred eecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHH
Q 021609 26 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFV 105 (310)
Q Consensus 26 ~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~ 105 (310)
++.|+.++||+|+|++++++++|+.++++||.+++.|++.|.++|..||.+++.+++.|++|++.+++||+.+.+++++.
T Consensus 1 ~k~~~a~~~kggvimdv~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~~kigh~~ 80 (287)
T TIGR00343 1 LKKGLAQMLKGGVIMDVVNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAKVRIGHFV 80 (287)
T ss_pred CchhHHHHhcCCeEEEeCCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEEeeccHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEeCCCCCch-hHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhh
Q 021609 106 EAQILEAIGIDYVDESEVLTPA-DEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSV 184 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~~~~~~~-~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~ 184 (310)
+++.++++|+|+|..+..+.|. ++...+ ++.++++++++|.|++|++++.+.|+|+|.+.+.+||+++.++++|+|.+
T Consensus 81 Ea~~L~~~GvDiIDeTe~lrPade~~~~~-K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~ 159 (287)
T TIGR00343 81 EAQILEALGVDYIDESEVLTPADWTFHID-KKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKI 159 (287)
T ss_pred HHHHHHHcCCCEEEccCCCCcHHHHHHHH-HHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHH
Confidence 9999999999999877666554 444444 34469999999999999999999999999999999999999999999988
Q ss_pred ccceEeeccc-ChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHH
Q 021609 185 MGDIRVLRNM-DDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 185 ~~~~~~l~~~-~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~ 263 (310)
....+.+..+ +.++++.+++...+++++++++++..++||+-||.|||.|++|+..++++|||||+|||+|++++||..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~ 239 (287)
T TIGR00343 160 NEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEK 239 (287)
T ss_pred HHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHH
Confidence 7776665554 345566667777888999999999889999745789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCChhhhhhhhhhcccchhcccCccchh-hhhcccC
Q 021609 264 RAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASRS 309 (310)
Q Consensus 264 ~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 309 (310)
.+++|++++++|.+|+.+.++++.+|++|+|++++.++- |||+.|.
T Consensus 240 ~akafv~ai~~~~~~~~~~e~s~~~~~~m~g~~~~~~~~~~~~~~r~ 286 (287)
T TIGR00343 240 LAKAIVEATTHYDNPEKLAEVSKDLGEAMKGISISSISEAERLQERG 286 (287)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHccccccCCCCccccCCHHHHhhhcC
Confidence 999999999999999999999999999999999999875 7888875
No 3
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=100.00 E-value=3.3e-44 Score=309.62 Aligned_cols=291 Identities=71% Similarity=1.097 Sum_probs=275.8
Q ss_pred eeccCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 18 ETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
+.+.++..+++|+.+++|+|+|++++++++|+.++++||.+++.|+..|.++|+.||.++|.+++.+++|..++.+||..
T Consensus 3 ~~~~gt~~vK~g~a~m~KGGVIMDV~n~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRMaDp~~i~eim~aVsIPVMA 82 (296)
T COG0214 3 ELRTGTERVKRGFAQMLKGGVIMDVVNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMA 82 (296)
T ss_pred ccccccHHHHhhHHHHhcCCeEEEecCHHHHHHHHhcCceeEeehhhCcHHHHhccCccccCCHHHHHHHHHhcccceee
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHH
Q 021609 98 KARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
|.+++++..++.+++.|+|.+..+..++|.+....+.++.|.+++.++++++-||.|-+..|+.+|.+.|-.+||++.++
T Consensus 83 KvRIGH~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eA 162 (296)
T COG0214 83 KVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEA 162 (296)
T ss_pred eeecchhHHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHH
Confidence 99999999999999999999998888999999999988889999999999999999999999999999998899999999
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
++|+|.....++.+...+.|+++.++++...|+++++++++..++||+-+|.|||.||.|+.-++++|||||.|||.|++
T Consensus 163 VrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 163 VRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 99999998888888999999988788889999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCccchh-hhhccc
Q 021609 258 SGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASR 308 (310)
Q Consensus 258 a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 308 (310)
++||.+.++.++++..+|.+|+.+.+++..+|++|+|++.+.+.- +|.+.|
T Consensus 243 S~~P~~~A~AIV~A~~~yddp~~laevs~~lg~~M~Gi~i~~l~~~~rlq~R 294 (296)
T COG0214 243 SSNPEKRAKAIVEATTHYDDPEVLAEVSEGLGEAMKGIDISELPEEERLQER 294 (296)
T ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHhccccCCCChhhCCHHHHHHhc
Confidence 999999999999999999999999999999999999999999875 455554
No 4
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=100.00 E-value=9.7e-44 Score=319.58 Aligned_cols=288 Identities=69% Similarity=1.080 Sum_probs=258.6
Q ss_pred ccCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeec
Q 021609 20 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAK 98 (310)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk 98 (310)
+.++|.++.|+.++||+|+|++++++++|+..+++|++++ .+| .+|.+.+..+|.+++..++.++++++.+++||+.+
T Consensus 2 ~~~~~~~k~g~a~m~kggvimdv~~~~~a~iae~~g~~~v-~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~V~iPVigk 80 (293)
T PRK04180 2 ETGTERVKRGFAEMLKGGVIMDVVNAEQAKIAEEAGAVAV-MALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAK 80 (293)
T ss_pred CCccHHHHHHHHHHhcCCeEEEeCCHHHHHHHHHhChHHH-HHccCCCchHhhcCCeeecCCHHHHHHHHHhCCCCeEEe
Confidence 3578999999999999999999999999999999999997 554 88888888899999999999999999999999999
Q ss_pred cccCcHHHHHHHHHcCCCEEEeCCCCCchh-HHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHH
Q 021609 99 ARIGHFVEAQILEAIGIDYVDESEVLTPAD-EENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 99 ~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~-~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
.+++++.+++.++++|+|+|..+..+.|.+ +...+ ++.+++++++++.|++|++++.+.|+|+|.+.|-.+||++.++
T Consensus 81 ~Righ~~Ea~~L~~~GvDiID~Te~lrpad~~~~~~-K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~a 159 (293)
T PRK04180 81 ARIGHFVEAQILEALGVDYIDESEVLTPADEEYHID-KWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEA 159 (293)
T ss_pred ehhhHHHHHHHHHHcCCCEEeccCCCCchHHHHHHH-HHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHH
Confidence 999999999999999999998666665543 34444 4456999999999999999999999999999998899999999
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
++|+|.....++.+...+++....+++...+++++++++++..++||+-||.|||.|++|+..++++|||+|+|||+|++
T Consensus 160 v~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 160 VRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 99999988887777777776654445556788999999999889999734679999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCccch-hhhhcccC
Q 021609 258 SGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK-VERFASRS 309 (310)
Q Consensus 258 a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 309 (310)
++||...+++|++++++|.+|+.+.++++.+|++|+|++++.++ -|+|+.|.
T Consensus 240 s~dP~~~akafv~ai~~~~~~~~~~~~s~~~~~~m~g~~~~~~~~~~~~~~r~ 292 (293)
T PRK04180 240 SGDPEKRARAIVEATTHYDDPEVLAEVSKGLGEAMVGIDIDELPPEERLQERG 292 (293)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHcccccccCCCccccCCHHHHhhhcC
Confidence 99999999999999999999999999999999999999999975 57888875
No 5
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=100.00 E-value=9.1e-40 Score=293.07 Aligned_cols=280 Identities=71% Similarity=1.117 Sum_probs=248.5
Q ss_pred cchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHH
Q 021609 28 VGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEA 107 (310)
Q Consensus 28 ~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a 107 (310)
+|+.++|++|.|++++++++|+.++++||.+++.|+..|.++|..+|.+++..++.|++|++.+++||+.+.+.++..++
T Consensus 1 ~~~~~~~~~g~~~~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea 80 (283)
T cd04727 1 RGFAQMLKGGVIMDVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVRIGHFVEA 80 (283)
T ss_pred CcHHHHhcCCeEEEeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeeehhHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHcCCCEEEeCCCCCc-hhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhcc
Q 021609 108 QILEAIGIDYVDESEVLTP-ADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~-~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~ 186 (310)
+.+.++|+|.|..+....| .++...++.. ++++++++|.|.+|++++.++|+|+|.+.+.+||+++.++++|.|....
T Consensus 81 ~~L~eaGvDiIDaT~r~rP~~~~~~~iK~~-~~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~ 159 (283)
T cd04727 81 QILEALGVDMIDESEVLTPADEEHHIDKHK-FKVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNG 159 (283)
T ss_pred HHHHHcCCCEEeccCCCCcHHHHHHHHHHH-cCCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 9999999999975555444 4566666554 4999999999999999999999999999999999998999999999887
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~ 266 (310)
.++.+...+++..+.+++...+++++++++++..++||+.||.|||.|++|+.+++++||++|+|||+|++++||...++
T Consensus 160 ~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk 239 (283)
T cd04727 160 EIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRAR 239 (283)
T ss_pred HHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHH
Confidence 76666666655432223334678999999999888999734679999999999999999999999999999999999999
Q ss_pred HHHHHHhccCChhhhhhhhhhcccchhcccCccchh-hhhccc
Q 021609 267 AIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASR 308 (310)
Q Consensus 267 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 308 (310)
+|++.+++|.+|..+.++++-+|.+|.|++++.+|. |||..|
T Consensus 240 ~f~~ai~~~~~~~~~~e~~~~~~~~m~~~~~~~~~~~~~~~~~ 282 (283)
T cd04727 240 AIVEAVTHYDDPEILAEVSEGLGEAMVGIDIASLKEEERMQER 282 (283)
T ss_pred HHHHHHHhcCCHHHHHHHHcccccCCCCcccccCCHHHHhccC
Confidence 999999999999999999999999999999998775 577654
No 6
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=99.96 E-value=3e-29 Score=208.74 Aligned_cols=206 Identities=76% Similarity=1.206 Sum_probs=174.3
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI 101 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~ 101 (310)
++|.++.|+.++|++|.|++++++++|+.++++||.+++.|++.|.++|..||.++|.++..+++|.+++.+||+.|-++
T Consensus 1 g~~~~k~gla~mlkGGVIMDV~n~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~I~eI~~aVsIPVMAK~RI 80 (208)
T PF01680_consen 1 GTFRVKRGLAQMLKGGVIMDVTNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEIMDAVSIPVMAKVRI 80 (208)
T ss_dssp SCHHHHHHHHHTTTTEEEEEESSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHHHHHHHHH-SSEEEEEEET
T ss_pred CchhHHhhHHHHhcCCeEEEecCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHHHHHHHHheEeceeecccc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHH
Q 021609 102 GHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV 181 (310)
Q Consensus 102 ~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~ 181 (310)
|++-.+|++++.|+|++..+..++|.+-...+.++.|.+++.++++++-||.|-+..|+.++.+.|-.+||++.++++|+
T Consensus 81 GHfvEAqiLealgVD~IDESEVLTpAD~~~HI~K~~F~vPFVcGarnLGEALRRI~EGAaMIRtKGEaGTGnvveAVrH~ 160 (208)
T PF01680_consen 81 GHFVEAQILEALGVDYIDESEVLTPADEENHIDKHNFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHM 160 (208)
T ss_dssp T-HHHHHHHHHTT-SEEEEETTS--S-SS----GGG-SS-EEEEESSHHHHHHHHHTT-SEEEEETTTTST-THHHHHHH
T ss_pred ceeehhhhHHHhCCceeccccccccccccccccchhCCCCeEecCCCHHHHHhhHHhhhhhhcccCCCCCCcHHHHHHHH
Confidence 99999999999999999999988998888899999999999999999999999999999999999988999999999999
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEe
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHF 227 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~i 227 (310)
|.....++.+..+++|+++.+++....|++++.++++..++||+-+
T Consensus 161 R~i~~eI~~l~~~~~~el~~~Ak~~~ap~eLv~~~~~~grLPVvnF 206 (208)
T PF01680_consen 161 RTINGEIRRLQNMDDEELFAFAKEIGAPYELVKEVAELGRLPVVNF 206 (208)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHHTCGHHHHHHHHHHTSSSSEEE
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCcccC
Confidence 9998889999999999999999999999999999999999999744
No 7
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=99.89 E-value=1.2e-21 Score=178.57 Aligned_cols=189 Identities=22% Similarity=0.322 Sum_probs=151.2
Q ss_pred cccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCC
Q 021609 37 GVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGI 115 (310)
Q Consensus 37 g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGa 115 (310)
|++....++ ++|+.|+++||++++.+ ++.+.|+|+ ++.++.+++.+++||+.++++.+..++..+.++||
T Consensus 64 g~i~~~~~~~~~A~~~~~~GA~aisvl----te~~~f~g~-----~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GA 134 (260)
T PRK00278 64 GVIREDFDPVEIAKAYEAGGAACLSVL----TDERFFQGS-----LEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGA 134 (260)
T ss_pred CccCCCCCHHHHHHHHHhCCCeEEEEe----cccccCCCC-----HHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCC
Confidence 555555555 78999999999999665 566778777 89999999999999999999876667889999999
Q ss_pred CEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecc
Q 021609 116 DYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 116 d~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
|.|+ ....+++.++.++++. +..++.++++++|.+|+.++.++|+++++++++.. .+
T Consensus 135 D~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl---------------------~~ 193 (260)
T PRK00278 135 DAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNL---------------------KT 193 (260)
T ss_pred CEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCc---------------------cc
Confidence 9995 5555666677777766 55789999999999999999999999999986531 11
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
..++++...++.+.. ..|++ +.|||.+++|+.+++.+|+|+|+||++|++++||...+++|+
T Consensus 194 ------------~~~d~~~~~~l~~~~p~~~~vI--aegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l~ 257 (260)
T PRK00278 194 ------------FEVDLETTERLAPLIPSDRLVV--SESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAALRELL 257 (260)
T ss_pred ------------ccCCHHHHHHHHHhCCCCCEEE--EEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHh
Confidence 122234444444432 24776 779999999999999999999999999999999998887664
No 8
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=99.89 E-value=1.6e-21 Score=180.97 Aligned_cols=193 Identities=22% Similarity=0.323 Sum_probs=152.5
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh-cCcceeeccccCcHHHHHHHHHc
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKARIGHFVEAQILEAI 113 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~~~~~a~~~~~a 113 (310)
+|+|....+| ++|+.|+++||.+|+.| ++.+.|+|+ ++.++++++. +++||++||++-+..++..+..+
T Consensus 132 kG~I~~~~dp~~iA~~Ye~~GA~aISVL----Td~~~F~Gs-----~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~ 202 (338)
T PLN02460 132 RGVLRENFDPVEIAQAYEKGGAACLSVL----TDEKYFQGS-----FENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSK 202 (338)
T ss_pred CCccCCCCCHHHHHHHHHhCCCcEEEEe----cCcCcCCCC-----HHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHc
Confidence 4777766677 78999999999999888 677889988 8999999998 99999999998754455556669
Q ss_pred CCCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHh-CCCEEEEcCCCCCcchHHHHHHHHhhccceEe
Q 021609 114 GIDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIRE-GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 114 Gad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~-Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
|||.|+ +...+++.++.++++. +..|+.+++.+||.+|+.++.++ |+++|+++++.
T Consensus 203 GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRd--------------------- 261 (338)
T PLN02460 203 GADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRS--------------------- 261 (338)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCC---------------------
Confidence 999996 7777887788777766 67899999999999999999998 99999999863
Q ss_pred ecccChhHHHHhhhccCCcHHHHH-----HHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHH
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVM-----QTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~-----~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a 265 (310)
+.++..| .....++.. .+.. .+ +++++++||+|++|+..+..+|+|+|+||++||+++||....
T Consensus 262 L~Tf~vD--------l~~t~~L~~~~~~~~i~~-~~--~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~~l 330 (338)
T PLN02460 262 LETFEVD--------ISNTKKLLEGERGEQIRE-KG--IIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGKGI 330 (338)
T ss_pred CCcceEC--------HHHHHHHhhhccccccCC-CC--eEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHH
Confidence 2232211 111122222 1110 12 333489999999999999999999999999999999998877
Q ss_pred HHHH
Q 021609 266 QAIV 269 (310)
Q Consensus 266 ~~l~ 269 (310)
++|+
T Consensus 331 ~~L~ 334 (338)
T PLN02460 331 AGLF 334 (338)
T ss_pred HHHh
Confidence 7664
No 9
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=99.89 E-value=1.8e-21 Score=173.85 Aligned_cols=191 Identities=23% Similarity=0.356 Sum_probs=153.0
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|+|....+| ++|+.|+++||.+++.| ++.++|.|+ ++.++.+++.+.+||++||++-+..++..+...|
T Consensus 59 ~G~ir~d~dp~~ia~~Ye~~GAa~iSVL----Td~~~F~Gs-----~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~G 129 (254)
T COG0134 59 KGLIREDFDPVEIAKAYEEGGAAAISVL----TDPKYFQGS-----FEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAG 129 (254)
T ss_pred CCcccccCCHHHHHHHHHHhCCeEEEEe----cCccccCCC-----HHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcC
Confidence 4666656666 67999999999999888 677888888 9999999999999999999988656667777799
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||.|+ +...++..++.+++.. +..|+.+++++||.+|+.++.++|+++|+++++.. .
T Consensus 130 ADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL---------------------~ 188 (254)
T COG0134 130 ADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDL---------------------T 188 (254)
T ss_pred cccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCc---------------------c
Confidence 99996 7777777777777766 66899999999999999999999999999998632 2
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
++..| ......+...+.+ + +++|+.+||++++|+.++...|+||++||+++|+++||....+++
T Consensus 189 tf~vd--------l~~t~~la~~~p~--~--~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l 252 (254)
T COG0134 189 TLEVD--------LETTEKLAPLIPK--D--VILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALREL 252 (254)
T ss_pred hheec--------HHHHHHHHhhCCC--C--cEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCHHHHHHHh
Confidence 22211 1112233333332 1 333489999999999999999999999999999999998777655
No 10
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=99.88 E-value=8.9e-21 Score=169.86 Aligned_cols=190 Identities=18% Similarity=0.238 Sum_probs=150.8
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|.+....++ ++|+.|+++||.+|+.| ++.+.|+|+ ++.++.+++.+++||+.|+++.+..++..+..+|
T Consensus 54 ~G~i~~~~d~~~~A~~y~~~GA~aISVl----Te~~~F~Gs-----~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~G 124 (247)
T PRK13957 54 AGELRADYHPVQIAKTYETLGASAISVL----TDQSYFGGS-----LEDLKSVSSELKIPVLRKDFILDEIQIREARAFG 124 (247)
T ss_pred CCCcCCCCCHHHHHHHHHHCCCcEEEEE----cCCCcCCCC-----HHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcC
Confidence 4666666666 78999999999999766 566788888 8999999999999999999998766666667799
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||.|+ +...+++.++.+++.. +..|+.+++++||.+|+.++.++|+++|++++|.. .
T Consensus 125 ADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL---------------------~ 183 (247)
T PRK13957 125 ASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDL---------------------D 183 (247)
T ss_pred CCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCC---------------------c
Confidence 99996 7777887788877766 67899999999999999999999999999998732 2
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
++..| .....++...+.+ +..+| +++||+|++|+.++... +|||+||+++|+++||....++|
T Consensus 184 t~~vd--------~~~~~~L~~~ip~--~~~~I--sESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~~~~~~~l 246 (247)
T PRK13957 184 TFQIH--------QNLVEEVAAFLPP--NIVKV--GESGIESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAWLSL 246 (247)
T ss_pred cceEC--------HHHHHHHHhhCCC--CcEEE--EcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCHHHHHHHh
Confidence 22211 1112333333332 23333 89999999999998876 99999999999999998776654
No 11
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=99.88 E-value=9e-22 Score=177.55 Aligned_cols=191 Identities=26% Similarity=0.381 Sum_probs=141.7
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|.+....++ ++|+.|+++||++|+.| ++.+.|+|+ ++.+..+++.+++|++.||++-+..++..+..+|
T Consensus 61 ~G~i~~~~d~~~~a~~y~~~GA~aiSVl----Te~~~F~Gs-----~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~G 131 (254)
T PF00218_consen 61 KGDIREDFDPAEIAKAYEEAGAAAISVL----TEPKFFGGS-----LEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAG 131 (254)
T ss_dssp TEESBSS-SHHHHHHHHHHTT-SEEEEE------SCCCHHH-----HHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT
T ss_pred CCccCccCCHHHHHHHHHhcCCCEEEEE----CCCCCCCCC-----HHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcC
Confidence 4667776677 78999999999999777 677888888 8999999999999999999987656666777799
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||+|+ +...+++..+.+++.. +..|+.+++.+||.+|+.++.++|+++++++++. +.
T Consensus 132 ADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRd---------------------L~ 190 (254)
T PF00218_consen 132 ADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRD---------------------LK 190 (254)
T ss_dssp -SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBC---------------------TT
T ss_pred CCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCcc---------------------cc
Confidence 99996 7777887777777766 6689999999999999999999999999999863 23
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
++..| .....++...+.+ ++.+ ++.+||++++|+.++..+|+|||+||++||+++||....++|
T Consensus 191 tf~vd--------~~~~~~l~~~ip~--~~~~--iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~~~~~~~L 254 (254)
T PF00218_consen 191 TFEVD--------LNRTEELAPLIPK--DVIV--ISESGIKTPEDARRLARAGADAVLVGEALMRSPDPGEALREL 254 (254)
T ss_dssp TCCBH--------THHHHHHHCHSHT--TSEE--EEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred CcccC--------hHHHHHHHhhCcc--ceeE--EeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHhcC
Confidence 33221 1112333333332 2333 389999999999999999999999999999999998877654
No 12
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.87 E-value=5.3e-21 Score=162.96 Aligned_cols=175 Identities=27% Similarity=0.387 Sum_probs=132.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc---C-------cHHHHHHHHHcCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI---G-------HFVEAQILEAIGI 115 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~---~-------~~~~a~~~~~aGa 115 (310)
.+|++++.+||.+| |.++ ++.++.+++.+++|++.-... + ..++++.+.++|+
T Consensus 3 ~mA~Aa~~gGA~gi----------R~~~-------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGa 65 (192)
T PF04131_consen 3 RMAKAAEEGGAVGI----------RANG-------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGA 65 (192)
T ss_dssp HHHHHHHHCT-SEE----------EEES-------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-
T ss_pred HHHHHHHHCCceEE----------EcCC-------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCC
Confidence 57899999999997 6655 899999999999999873211 1 2588999999999
Q ss_pred CEE-E-eCCC---CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEe
Q 021609 116 DYV-D-ESEV---LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 116 d~V-i-~~~~---~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
|.| + .+.. .+..++.+.+++++ ..+++||.|.+|+..+.++|+|+|++...+||++.
T Consensus 66 dIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t---------------- 127 (192)
T PF04131_consen 66 DIIALDATDRPRPETLEELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYT---------------- 127 (192)
T ss_dssp SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTS----------------
T ss_pred CEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCC----------------
Confidence 999 3 4433 34556666666543 89999999999999999999999998877777641
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
+...+++++++++.+. ++||+ ++|+|++|+++.+++++||++|+|||+|++ |...+++|.+
T Consensus 128 -------------~~~~pD~~lv~~l~~~-~~pvI--aEGri~tpe~a~~al~~GA~aVVVGsAITr---P~~It~~F~~ 188 (192)
T PF04131_consen 128 -------------KGDGPDFELVRELVQA-DVPVI--AEGRIHTPEQAAKALELGAHAVVVGSAITR---PQEITKRFVD 188 (192)
T ss_dssp -------------TTSSHHHHHHHHHHHT-TSEEE--EESS--SHHHHHHHHHTT-SEEEE-HHHH----HHHHHHHHHH
T ss_pred -------------CCCCCCHHHHHHHHhC-CCcEe--ecCCCCCHHHHHHHHhcCCeEEEECcccCC---HHHHHHHHHH
Confidence 1235679999999885 89988 899999999999999999999999999997 9999999998
Q ss_pred HHhc
Q 021609 271 AVTH 274 (310)
Q Consensus 271 ~i~~ 274 (310)
++++
T Consensus 189 ai~~ 192 (192)
T PF04131_consen 189 AIKK 192 (192)
T ss_dssp HCHH
T ss_pred HHhC
Confidence 8763
No 13
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.87 E-value=2.8e-20 Score=165.30 Aligned_cols=188 Identities=21% Similarity=0.304 Sum_probs=147.0
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|.+....++ ++|+.|+++||++|..+ .+...++|+ ++.++.+++.+++||++++++...++++.+.++|
T Consensus 24 ~~~~~~~~~~~~~A~~~~~~GA~~l~v~----~~~~~~~g~-----~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~G 94 (217)
T cd00331 24 KGLIREDFDPVEIAKAYEKAGAAAISVL----TEPKYFQGS-----LEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAG 94 (217)
T ss_pred CCcCCCCCCHHHHHHHHHHcCCCEEEEE----eCccccCCC-----HHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcC
Confidence 3566666677 79999999999998222 122344444 7899999998999999998766656899999999
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||+|+ ...++++.++.++++. ...++..++++++.+++.++.+.|++++.++++..+
T Consensus 95 ad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~--------------------- 153 (217)
T cd00331 95 ADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDLK--------------------- 153 (217)
T ss_pred CCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCcc---------------------
Confidence 99996 5555666666666655 446888899999999999999999999998754321
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQA 267 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~ 267 (310)
...++++.+.++++. .++|++ ++|||++++|+.+++++|||||+|||+|+++.||...+++
T Consensus 154 ------------~~~~~~~~~~~l~~~~~~~~pvi--a~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~~~~~~ 216 (217)
T cd00331 154 ------------TFEVDLNTTERLAPLIPKDVILV--SESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALRE 216 (217)
T ss_pred ------------ccCcCHHHHHHHHHhCCCCCEEE--EEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHh
Confidence 112345667777665 468998 7899999999999999999999999999999999877664
No 14
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=99.86 E-value=3.9e-20 Score=187.13 Aligned_cols=197 Identities=24% Similarity=0.300 Sum_probs=159.1
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|.|....++ ++|+.|+++||++|+.| ++.+.|+|+ ++.++++++.+++||+.||++-+..++..+..+|
T Consensus 63 ~G~i~~~~d~~~~a~~y~~~GA~aiSVl----Te~~~F~Gs-----~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~G 133 (695)
T PRK13802 63 KGHLSDIPDPAALAREYEQGGASAISVL----TEGRRFLGS-----LDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHG 133 (695)
T ss_pred CCcCCCCCCHHHHHHHHHHcCCcEEEEe----cCcCcCCCC-----HHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcC
Confidence 4777777677 78999999999999777 677888888 8999999999999999999988655666677799
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||.|+ +...++..++.++++. +..++.+++.+||.+|+.++.++|+++|+++++. +.
T Consensus 134 ADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRd---------------------L~ 192 (695)
T PRK13802 134 ADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARN---------------------LK 192 (695)
T ss_pred CCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCC---------------------Cc
Confidence 99996 7777777778777766 6789999999999999999999999999999863 22
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
++..| .....++.+.+.+ ++.+| +++||++++|+..+..+|+|+|+||++||+++||....++|..+-
T Consensus 193 tf~vd--------~~~t~~L~~~ip~--~~~~V--sESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~~~ 260 (695)
T PRK13802 193 DLKVD--------VNKYNELAADLPD--DVIKV--AESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVKAG 260 (695)
T ss_pred cceeC--------HHHHHHHHhhCCC--CcEEE--EcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHhcc
Confidence 22211 1122334443432 33344 899999999999999999999999999999999999988887665
Q ss_pred hc
Q 021609 273 TH 274 (310)
Q Consensus 273 ~~ 274 (310)
.+
T Consensus 261 ~~ 262 (695)
T PRK13802 261 AR 262 (695)
T ss_pred cc
Confidence 44
No 15
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=6.3e-20 Score=156.85 Aligned_cols=195 Identities=28% Similarity=0.408 Sum_probs=157.6
Q ss_pred chhhhhhCcccccCCCH------------HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCccee
Q 021609 29 GLAQMLRGGVIMDVVTP------------EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVM 96 (310)
Q Consensus 29 ~~~~~~~~g~i~~~~~~------------~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~ 96 (310)
.+..++++|+|++++-. .+|++++++||.+| |.++ .+.++.+++.+++|++
T Consensus 8 ~~~~~~~gglIVSCQal~~~pl~~~~iv~~mA~Aa~~gGAvgi----------R~~g-------v~dIkai~~~v~vPII 70 (229)
T COG3010 8 KLKEQLKGGLIVSCQALPGEPLDSPEIVAAMALAAEQGGAVGI----------RIEG-------VEDIKAIRAVVDVPII 70 (229)
T ss_pred HHHHHhcCCeEEEeecCCCCCCcchhHHHHHHHHHHhCCcceE----------eecc-------hhhHHHHHhhCCCCeE
Confidence 44556788999999743 37999999999987 6554 6899999999999998
Q ss_pred ec---c------ccC-cHHHHHHHHHcCCCEEE--eCCCCCch-hHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCE
Q 021609 97 AK---A------RIG-HFVEAQILEAIGIDYVD--ESEVLTPA-DEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAM 162 (310)
Q Consensus 97 vk---~------~~~-~~~~a~~~~~aGad~Vi--~~~~~~~~-~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~ 162 (310)
.- + ++. +.++++.+.++|++.|- .+...-|. ++.++++. +.+++..++||.|++|...+.++|+|+
T Consensus 71 GIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~ 150 (229)
T COG3010 71 GIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDI 150 (229)
T ss_pred EEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcE
Confidence 63 2 222 25889999999999993 44433333 55566655 668899999999999999999999999
Q ss_pred EEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHH
Q 021609 163 IRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM 242 (310)
Q Consensus 163 V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l 242 (310)
|++.-.+||++.. +...+++.+++++.+ .+++|| |+|.++||+++.+++
T Consensus 151 IGTTLsGYT~~~~----------------------------~~~~pDf~lvk~l~~-~~~~vI--AEGr~~tP~~Ak~a~ 199 (229)
T COG3010 151 IGTTLSGYTGYTE----------------------------KPTEPDFQLVKQLSD-AGCRVI--AEGRYNTPEQAKKAI 199 (229)
T ss_pred EecccccccCCCC----------------------------CCCCCcHHHHHHHHh-CCCeEE--eeCCCCCHHHHHHHH
Confidence 9977667766310 123677999999988 689998 899999999999999
Q ss_pred HcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 243 QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 243 ~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
+.||++|+||++|++ |...+++|.+++++
T Consensus 200 ~~Ga~aVvVGsAITR---p~~It~~F~~~ik~ 228 (229)
T COG3010 200 EIGADAVVVGSAITR---PEEITQWFVDAIKS 228 (229)
T ss_pred HhCCeEEEECcccCC---HHHHHHHHHHHHhc
Confidence 999999999999997 99999999998875
No 16
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=99.83 E-value=4.8e-19 Score=172.09 Aligned_cols=218 Identities=21% Similarity=0.227 Sum_probs=166.5
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|.+....++ ++|+.| +.||.+++.| ++.+.|+|+ ++.++++++.+++|++.||++-+..++..+..+|
T Consensus 63 ~G~i~~~~d~~~~a~~y-~~gA~aiSVl----Te~~~F~Gs-----~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~G 132 (454)
T PRK09427 63 KGLIRDDFDPAEIARVY-KHYASAISVL----TDEKYFQGS-----FDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYG 132 (454)
T ss_pred CCccCCCCCHHHHHHHH-HcCCeEEEEe----cCcCcCCCC-----HHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcC
Confidence 4666666676 789999 8889999777 677888888 8999999999999999999988655666677799
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||.|+ +...+++.++.++++. +..|+..++++||.+|+.++.++|+++|+++++.. .
T Consensus 133 ADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL---------------------~ 191 (454)
T PRK09427 133 ADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNL---------------------R 191 (454)
T ss_pred CCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCC---------------------c
Confidence 99996 7777777777777766 67899999999999999999999999999998632 2
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
++..| .....++.+.+.+ ++.++ +++||+|++|+..+.. |+|||+||++||+++||....++|....
T Consensus 192 t~~vd--------~~~~~~l~~~ip~--~~~~v--seSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~~~~~~~L~~~~ 258 (454)
T PRK09427 192 DLSID--------LNRTRELAPLIPA--DVIVI--SESGIYTHAQVRELSP-FANGFLIGSSLMAEDDLELAVRKLILGE 258 (454)
T ss_pred cceEC--------HHHHHHHHhhCCC--CcEEE--EeCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCHHHHHHHHhccc
Confidence 22211 1122334444432 33344 8999999999999754 7999999999999999999888886653
Q ss_pred hccC--ChhhhhhhhhhcccchhcccC
Q 021609 273 THYS--DPEVLAEVSCGLGEAMVGLNL 297 (310)
Q Consensus 273 ~~~~--~~~~~~~~~~~~~~~~~~~~~ 297 (310)
-+-+ ....-.......|-.+.|+-.
T Consensus 259 vKICGit~~eda~~a~~~GaD~lGfIf 285 (454)
T PRK09427 259 NKVCGLTRPQDAKAAYDAGAVYGGLIF 285 (454)
T ss_pred cccCCCCCHHHHHHHHhCCCCEEeeEe
Confidence 3322 222233455667888888853
No 17
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=99.79 E-value=9.9e-18 Score=147.31 Aligned_cols=183 Identities=21% Similarity=0.298 Sum_probs=142.8
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCC--CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eC
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVAR--MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~--~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~ 121 (310)
.+.++.+.++|++.+ +| |.++.+.. ....+.++.+++.+++|++++++ .+.+.+.|||+|. ++
T Consensus 24 ~~~ve~al~~Gv~~v-Ql-------R~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~------~dlA~~~~AdGVHlGq 89 (211)
T COG0352 24 LEWVEAALKGGVTAV-QL-------REKDLSDEEYLALAEKLRALCQKYGVPLIINDR------VDLALAVGADGVHLGQ 89 (211)
T ss_pred HHHHHHHHhCCCeEE-EE-------ecCCCChHHHHHHHHHHHHHHHHhCCeEEecCc------HHHHHhCCCCEEEcCC
Confidence 678889999999976 77 33332221 11234666677888999998875 4467799999996 77
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHH
Q 021609 122 EVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~ 201 (310)
++++..+.++.+ +.++.+++++|+.+|+.++.+.|+|||.+.. +++|.++++
T Consensus 90 ~D~~~~~ar~~~---~~~~iIG~S~h~~eea~~A~~~g~DYv~~Gp----------------------ifpT~tK~~--- 141 (211)
T COG0352 90 DDMPLAEARELL---GPGLIIGLSTHDLEEALEAEELGADYVGLGP----------------------IFPTSTKPD--- 141 (211)
T ss_pred cccchHHHHHhc---CCCCEEEeecCCHHHHHHHHhcCCCEEEECC----------------------cCCCCCCCC---
Confidence 777777776664 4678999999999999999999999999753 233333211
Q ss_pred hhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 202 FAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 202 ~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
.....++.++++++..++|+++| ||| +++++.+++++|++||.|-|+|++++||...++++.+.++.+
T Consensus 142 ---~~~~G~~~l~~~~~~~~iP~vAI--GGi-~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~~ 209 (211)
T COG0352 142 ---APPLGLEGLREIRELVNIPVVAI--GGI-NLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALEDE 209 (211)
T ss_pred ---CCccCHHHHHHHHHhCCCCEEEE--cCC-CHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHHhh
Confidence 01223778888888878999966 999 799999999999999999999999999999999999988754
No 18
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.78 E-value=1.3e-17 Score=147.61 Aligned_cols=205 Identities=22% Similarity=0.309 Sum_probs=159.6
Q ss_pred eeecchhhhhhCcccccCC----CH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 25 SVKVGLAQMLRGGVIMDVV----TP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~~~~----~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
-++.|.+++|.+|++.+-+ +| ++|+.|.+.||.++ ++|+ .++.|. ..+.+.++++.+.+++||.+
T Consensus 9 Dl~~G~~VRL~qGd~~~~~~y~~~P~~~a~~~~~~Ga~~lHlVDLd------gA~~g~--~~n~~~i~~i~~~~~~~vQv 80 (241)
T COG0106 9 DLKDGKVVRLVQGDYGKETVYSDDPLEVAKKWSDQGAEWLHLVDLD------GAKAGG--PRNLEAIKEILEATDVPVQV 80 (241)
T ss_pred EeeCCEEEEeecccCCcceEecCCHHHHHHHHHHcCCcEEEEeecc------ccccCC--cccHHHHHHHHHhCCCCEEe
Confidence 4667889999999987743 44 79999999999998 7886 233222 35689999999999999999
Q ss_pred ccccCcHHHHHHHHHcCCCEEE-eCCCCC-chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCC-Ccch
Q 021609 98 KARIGHFVEAQILEAIGIDYVD-ESEVLT-PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAG-TGNI 174 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi-~~~~~~-~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~-~~~~ 174 (310)
...+...+.++.++++|++.|+ .+.+.. |.-+.+++++++-.+.+.+|++.. .+.++||.. ++
T Consensus 81 GGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g------------~vav~GW~e~s~-- 146 (241)
T COG0106 81 GGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDG------------KVAVSGWQEDSG-- 146 (241)
T ss_pred eCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCC------------cccccccccccc--
Confidence 9888888999999999999996 666655 445566666676347788888665 346788854 33
Q ss_pred HHHHHHHHhhccc---eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc-CCCEEE
Q 021609 175 IEAVRHVRSVMGD---IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVF 250 (310)
Q Consensus 175 ~~~~~~~r~~~~~---~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~-GadgV~ 250 (310)
.+..+..+++... .-+++..++|+++ .++++++++++.+.+++|++ ++|||+|.+|+..+..+ |++|++
T Consensus 147 ~~~~~l~~~~~~~g~~~ii~TdI~~DGtl-----~G~n~~l~~~l~~~~~ipvi--aSGGv~s~~Di~~l~~~~G~~GvI 219 (241)
T COG0106 147 VELEELAKRLEEVGLAHILYTDISRDGTL-----SGPNVDLVKELAEAVDIPVI--ASGGVSSLDDIKALKELSGVEGVI 219 (241)
T ss_pred CCHHHHHHHHHhcCCCeEEEEeccccccc-----CCCCHHHHHHHHHHhCcCEE--EecCcCCHHHHHHHHhcCCCcEEE
Confidence 2344444444333 5566777877764 46779999999999999998 89999999999999999 899999
Q ss_pred EccccccC
Q 021609 251 VGSGVFKS 258 (310)
Q Consensus 251 VGsai~~a 258 (310)
+|+||+..
T Consensus 220 vG~ALy~g 227 (241)
T COG0106 220 VGRALYEG 227 (241)
T ss_pred EehHHhcC
Confidence 99999974
No 19
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.74 E-value=3.2e-16 Score=139.59 Aligned_cols=177 Identities=23% Similarity=0.305 Sum_probs=129.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCccee---eccc------cC-cHHHHHHHHHcCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVM---AKAR------IG-HFVEAQILEAIGI 115 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~---vk~~------~~-~~~~a~~~~~aGa 115 (310)
++|+++.++|+.++ .+ . .++.++++++.+++|++ .++. ++ ..++++.+.++||
T Consensus 27 ~~a~a~~~~G~~~~-~~-------~---------~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGa 89 (221)
T PRK01130 27 AMALAAVQGGAVGI-RA-------N---------GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGA 89 (221)
T ss_pred HHHHHHHHCCCeEE-Ec-------C---------CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCC
Confidence 67999999999887 22 1 17899999988999997 3331 11 3467899999999
Q ss_pred CEEEe--CCC-----CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccce
Q 021609 116 DYVDE--SEV-----LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 116 d~Vi~--~~~-----~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
|.|+. +.. .+..++.+.++++ .++++++++++.+++.++.+.|+|++.++..+.++.
T Consensus 90 d~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~--------------- 153 (221)
T PRK01130 90 DIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEE--------------- 153 (221)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecC---------------
Confidence 98752 211 2334555665544 789999999999999999999999998754322221
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
.. . .....++.++++++..++|++ +.|||++++|+.+++++|||+|++||+|++.++ ..+.|
T Consensus 154 ---~~-~---------~~~~~~~~i~~i~~~~~iPvi--a~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~---~~~~~ 215 (221)
T PRK01130 154 ---TK-K---------PEEPDFALLKELLKAVGCPVI--AEGRINTPEQAKKALELGAHAVVVGGAITRPEE---ITKWF 215 (221)
T ss_pred ---CC-C---------CCCcCHHHHHHHHHhCCCCEE--EECCCCCHHHHHHHHHCCCCEEEEchHhcCCHH---HHHHH
Confidence 00 0 123346788888887789998 789999999999999999999999999997444 44556
Q ss_pred HHHHh
Q 021609 269 VRAVT 273 (310)
Q Consensus 269 ~~~i~ 273 (310)
.+.++
T Consensus 216 ~~~~~ 220 (221)
T PRK01130 216 VDALK 220 (221)
T ss_pred HHHhh
Confidence 55543
No 20
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.71 E-value=6.8e-16 Score=139.06 Aligned_cols=205 Identities=17% Similarity=0.204 Sum_probs=148.9
Q ss_pred eeecchhhhhhCccccc----CCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 25 SVKVGLAQMLRGGVIMD----VVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~~----~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
-++.|.++++.+|.... ..+| ++|+.|.+.||+++ ++||.. ..| ...+.+.++++.+.+ .|+.+
T Consensus 8 Dl~~Gk~Vrl~~G~~~~~~~~~~dP~~~A~~~~~~ga~~lhivDLd~a------~~g--~~~n~~~i~~i~~~~-~~v~v 78 (241)
T PRK14114 8 DLFRGKVARMVKGKKENTIFYEKDPAELVEKLIEEGFTLIHVVDLSKA------IEN--SVENLPVLEKLSEFA-EHIQI 78 (241)
T ss_pred EEECCEEEEeeccccCcceEECCCHHHHHHHHHHCCCCEEEEEECCCc------ccC--CcchHHHHHHHHhhc-CcEEE
Confidence 35567777777776433 3577 78999999999998 677522 111 234578999998887 79999
Q ss_pred ccccCcHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCC-CcchH
Q 021609 98 KARIGHFVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAG-TGNII 175 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~-~~~~~ 175 (310)
...+...++++.+.++||+.|+ ++..++.+++.+.+.+++..+.+.+|++. | .+.++||.. ++ .
T Consensus 79 GGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~----------g--~v~~~gw~~~~~--~ 144 (241)
T PRK14114 79 GGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRG----------G--KVAFKGWLAEEE--I 144 (241)
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccC----------C--EEeeCCCeecCC--C
Confidence 8888788999999999999985 77777777666666544323444455433 2 466778743 22 1
Q ss_pred HHHHHHHhhccc---eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc-----C-C
Q 021609 176 EAVRHVRSVMGD---IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-----G-C 246 (310)
Q Consensus 176 ~~~~~~r~~~~~---~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~-----G-a 246 (310)
+..++++++... .-+++++++|++ ..++++++++++++..++||+ ++|||++.+|+.++..+ | +
T Consensus 145 ~~~e~~~~~~~~g~~~ii~tdI~rdGt-----~~G~d~el~~~l~~~~~~pvi--asGGv~s~~Dl~~l~~~~~~~~g~v 217 (241)
T PRK14114 145 DPVSLLKRLKEYGLEEIVHTEIEKDGT-----LQEHDFSLTRKIAIEAEVKVF--AAGGISSENSLKTAQRVHRETNGLL 217 (241)
T ss_pred CHHHHHHHHHhcCCCEEEEEeechhhc-----CCCcCHHHHHHHHHHCCCCEE--EECCCCCHHHHHHHHhcccccCCcE
Confidence 244554444332 556677787775 257789999999988899998 89999999999999886 6 9
Q ss_pred CEEEEccccccCC
Q 021609 247 DGVFVGSGVFKSG 259 (310)
Q Consensus 247 dgV~VGsai~~a~ 259 (310)
+|+++|++|+.-.
T Consensus 218 ~gvivg~Al~~g~ 230 (241)
T PRK14114 218 KGVIVGRAFLEGI 230 (241)
T ss_pred EEEEEehHHHCCC
Confidence 9999999999743
No 21
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=99.71 E-value=2.7e-16 Score=136.97 Aligned_cols=210 Identities=22% Similarity=0.265 Sum_probs=155.6
Q ss_pred hhhhhhCcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHH
Q 021609 30 LAQMLRGGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQ 108 (310)
Q Consensus 30 ~~~~~~~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~ 108 (310)
+++..++-...+..+| ++|+.|.+.|||.++-|+ +.+.. ..+....+.++++.+.+.+|+.+...+...++++
T Consensus 17 VVKGv~F~~lrd~GDpVelA~~Y~e~GADElvFlD-----ItAs~-~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~ 90 (256)
T COG0107 17 VVKGVNFKNLRDAGDPVELAKRYNEEGADELVFLD-----ITASS-EGRETMLDVVERVAEQVFIPLTVGGGIRSVEDAR 90 (256)
T ss_pred EEecccccchhhcCChHHHHHHHHHcCCCeEEEEe-----ccccc-ccchhHHHHHHHHHhhceeeeEecCCcCCHHHHH
Confidence 3344444456666777 899999999999997775 22211 1123447899999999999999999888889999
Q ss_pred HHHHcCCCEE-EeCCCCCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHH--HhCCCEEEEcCC-CCCcchHHHHHHHHh
Q 021609 109 ILEAIGIDYV-DESEVLTPADEENHINKHNFR-IPFVCGCRNLGEALRRI--REGAAMIRTKGE-AGTGNIIEAVRHVRS 183 (310)
Q Consensus 109 ~~~~aGad~V-i~~~~~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~--~~Gad~V~v~g~-~~~~~~~~~~~~~r~ 183 (310)
.++.+|||.| +.+.++..++++..+... ++ +++.+++. +++-. +.+-..|.++|. ..++ .++++|.++
T Consensus 91 ~ll~aGADKVSINsaAv~~p~lI~~~a~~-FGsQciVvaID----akr~~~g~~~~~~v~~~gGr~~t~--~d~~~Wa~~ 163 (256)
T COG0107 91 KLLRAGADKVSINSAAVKDPELITEAADR-FGSQCIVVAID----AKRVPDGENGWYEVFTHGGREDTG--LDAVEWAKE 163 (256)
T ss_pred HHHHcCCCeeeeChhHhcChHHHHHHHHH-hCCceEEEEEE----eeeccCCCCCcEEEEecCCCcCCC--cCHHHHHHH
Confidence 9999999999 577778777787766552 34 44444431 22211 222345777754 3343 468899988
Q ss_pred hccc---eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCC
Q 021609 184 VMGD---IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSG 259 (310)
Q Consensus 184 ~~~~---~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~ 259 (310)
...+ .-+++.++.|++ ..+.++++++.+++.+++||| ||||..+++|+.+++..| ||+++.+|-|...+
T Consensus 164 ~e~~GAGEIlLtsmD~DGt-----k~GyDl~l~~~v~~~v~iPvI--ASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~ 236 (256)
T COG0107 164 VEELGAGEILLTSMDRDGT-----KAGYDLELTRAVREAVNIPVI--ASGGAGKPEHFVEAFTEGKADAALAASIFHFGE 236 (256)
T ss_pred HHHcCCceEEEeeeccccc-----ccCcCHHHHHHHHHhCCCCEE--ecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCc
Confidence 6665 778888888765 357789999999999999998 999999999999999666 99999999888743
No 22
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.70 E-value=1.3e-15 Score=136.92 Aligned_cols=206 Identities=15% Similarity=0.157 Sum_probs=147.9
Q ss_pred ceeecchhhhhhCcccccCC----CH-HHHHHHHH-cCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcce
Q 021609 24 FSVKVGLAQMLRGGVIMDVV----TP-EQARVAEE-AGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPV 95 (310)
Q Consensus 24 ~~~~~~~~~~~~~g~i~~~~----~~-~~A~~~~~-~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv 95 (310)
..++.|.++++++|.....+ +| ++|+.|.+ .||+++ +||+... .| ...+.+.++++.+.+++|+
T Consensus 8 IDl~~G~~Vr~~~G~~~~~~~~~~dp~~~a~~~~~~~Ga~~l~ivDLd~a~------~~--~~~n~~~I~~i~~~~~~pi 79 (234)
T PRK13587 8 IDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAK------AQ--HAREFDYIKSLRRLTTKDI 79 (234)
T ss_pred EEccCCEEEEcCcccCCCceEeCCCHHHHHHHHHhccCCCEEEEEECcccc------cC--CcchHHHHHHHHhhcCCeE
Confidence 34667888888888766543 65 89999998 799998 6775221 11 1345889999999999999
Q ss_pred eeccccCcHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcc
Q 021609 96 MAKARIGHFVEAQILEAIGIDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGN 173 (310)
Q Consensus 96 ~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~ 173 (310)
++...+...++++.+.++||+.|+ .+..++.+++.+.+.+ ++-.+.+.+|.... .+.+++|.....
T Consensus 80 ~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g------------~v~~~gw~~~~~ 147 (234)
T PRK13587 80 EVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGE------------DIKVNGWEEDTE 147 (234)
T ss_pred EEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCC------------EEEecCCcccCC
Confidence 999888888999999999999996 6666666655444444 43234445554322 456777743111
Q ss_pred hHHHHHHHHhhccc---eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 174 IIEAVRHVRSVMGD---IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 174 ~~~~~~~~r~~~~~---~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
.+..++++++... .-+++..++|++ ..++++++++++.+..++|++ ++|||++++|+.+++++|+++|+
T Consensus 148 -~~~~~~~~~~~~~g~~~ii~tdi~~dGt-----~~G~~~~li~~l~~~~~ipvi--~~GGi~s~edi~~l~~~G~~~vi 219 (234)
T PRK13587 148 -LNLFSFVRQLSDIPLGGIIYTDIAKDGK-----MSGPNFELTGQLVKATTIPVI--ASGGIRHQQDIQRLASLNVHAAI 219 (234)
T ss_pred -CCHHHHHHHHHHcCCCEEEEecccCcCC-----CCccCHHHHHHHHHhCCCCEE--EeCCCCCHHHHHHHHHcCCCEEE
Confidence 1234444443222 345555565554 246778999999887889998 79999999999999999999999
Q ss_pred Ecccccc
Q 021609 251 VGSGVFK 257 (310)
Q Consensus 251 VGsai~~ 257 (310)
+|+++++
T Consensus 220 vG~a~~~ 226 (234)
T PRK13587 220 IGKAAHQ 226 (234)
T ss_pred EhHHHHh
Confidence 9999996
No 23
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=99.70 E-value=1.1e-15 Score=138.01 Aligned_cols=203 Identities=17% Similarity=0.194 Sum_probs=151.2
Q ss_pred eeecchhhhhhCccccc-----------C------CCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHH
Q 021609 25 SVKVGLAQMLRGGVIMD-----------V------VTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLI 84 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~~-----------~------~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i 84 (310)
-++.|.+++|.+|.+.+ . .+| ++|+.|.+.||+++ ++|++ | ...+.+.+
T Consensus 8 Dl~~Gk~VrL~~G~~~~~~~~~~~~~~~~~~y~~~~dP~~~A~~~~~~Ga~~lHvVDLdg---------g--~~~n~~~i 76 (262)
T PLN02446 8 DIHKGKVKQIVGSTLKDSKDGSEDGSELVTNFESDKSAAEFAEMYKRDGLTGGHVIMLGA---------D--DASLAAAL 76 (262)
T ss_pred EeeCCEEEEeeCccccccccccccCCCceEEeCCCCCHHHHHHHHHHCCCCEEEEEECCC---------C--CcccHHHH
Confidence 36678888999998855 2 456 89999999999987 77742 1 23457899
Q ss_pred HHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCCCCC-----chhHHHHHHhcCCC-CcEEEecCCHHHHHHHHH
Q 021609 85 KEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESEVLT-----PADEENHINKHNFR-IPFVCGCRNLGEALRRIR 157 (310)
Q Consensus 85 ~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~~-----~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~ 157 (310)
+++++ +++||.+...+.. ++++.++++||+.|+ ++.+++ |.-+.+++++++.+ +.+.+|+.. .
T Consensus 77 ~~i~~-~~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~--------~ 146 (262)
T PLN02446 77 EALRA-YPGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRK--------K 146 (262)
T ss_pred HHHHh-CCCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEe--------c
Confidence 99998 8899999887764 999999999999996 665554 44445555556555 666677641 1
Q ss_pred hCCCEEEEcCCCC-CcchHHHHHHHHhhc---cceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCC
Q 021609 158 EGAAMIRTKGEAG-TGNIIEAVRHVRSVM---GDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVA 233 (310)
Q Consensus 158 ~Gad~V~v~g~~~-~~~~~~~~~~~r~~~---~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~ 233 (310)
.|-..|.++||.. ++ .+..+++.+.. ...-+++.+++|+++ .++++++++++.+.+++||+ |+|||+
T Consensus 147 ~g~~~Va~~GW~~~t~--~~~~e~~~~~~~~g~~eii~TdI~rDGtl-----~G~d~el~~~l~~~~~ipVI--ASGGv~ 217 (262)
T PLN02446 147 DGRYYVVTDRWQKFSD--LAVDEETLEFLAAYCDEFLVHGVDVEGKR-----LGIDEELVALLGEHSPIPVT--YAGGVR 217 (262)
T ss_pred CCCEEEEECCCcccCC--CCHHHHHHHHHHhCCCEEEEEEEcCCCcc-----cCCCHHHHHHHHhhCCCCEE--EECCCC
Confidence 2334788999954 33 22444433322 236677778888763 57789999999998999998 899999
Q ss_pred CHHHHHHHHHc--CCCEEEEcccc--cc
Q 021609 234 TPADAAMMMQL--GCDGVFVGSGV--FK 257 (310)
Q Consensus 234 t~~d~~~~l~~--GadgV~VGsai--~~ 257 (310)
+.+|+.++..+ |..++++|+|| |.
T Consensus 218 sleDi~~L~~~g~g~~gvIvGkAl~~y~ 245 (262)
T PLN02446 218 SLDDLERVKVAGGGRVDVTVGSALDIFG 245 (262)
T ss_pred CHHHHHHHHHcCCCCEEEEEEeeHHHhC
Confidence 99999999987 58999999999 75
No 24
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.70 E-value=1.5e-15 Score=135.23 Aligned_cols=169 Identities=24% Similarity=0.344 Sum_probs=125.6
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee---ccc------cC-cHHHHHHHHHcCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA---KAR------IG-HFVEAQILEAIGI 115 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v---k~~------~~-~~~~a~~~~~aGa 115 (310)
++++++.++|+..+ .. .+++.++.+++.+++|++. +++ ++ +.++++.+.++|+
T Consensus 31 ~~a~~~~~~G~~~~-~~----------------~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGa 93 (219)
T cd04729 31 AMALAAVQGGAVGI-RA----------------NGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGA 93 (219)
T ss_pred HHHHHHHHCCCeEE-Ec----------------CCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCC
Confidence 57889999999875 21 1268889888888999974 332 12 2357899999999
Q ss_pred CEEEe--CC-----CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccce
Q 021609 116 DYVDE--SE-----VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 116 d~Vi~--~~-----~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
|.|+. .. .....++.+.+++.+ +++++++++|.+++.++.+.|+|++.++..+.++.
T Consensus 94 d~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~--------------- 157 (219)
T cd04729 94 DIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAKLGFDIIGTTLSGYTEE--------------- 157 (219)
T ss_pred CEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHHHHHcCCCEEEccCcccccc---------------
Confidence 98852 11 123455666665555 68999999999999999999999997643322211
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
... .....++.++.+++..++|++ +.|||++++|+.+++++|||+|++||+|++.+||.
T Consensus 158 ----~~~---------~~~~~~~~l~~i~~~~~ipvi--a~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~~ 216 (219)
T cd04729 158 ----TAK---------TEDPDFELLKELRKALGIPVI--AEGRINSPEQAAKALELGADAVVVGSAITRPEHIT 216 (219)
T ss_pred ----ccC---------CCCCCHHHHHHHHHhcCCCEE--EeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhHh
Confidence 000 123457788888887789998 78999999999999999999999999999987775
No 25
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=99.70 E-value=4.1e-16 Score=134.19 Aligned_cols=190 Identities=23% Similarity=0.280 Sum_probs=141.9
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh--cCcc---eeeccccCcHHHHHH
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS--VTIP---VMAKARIGHFVEAQI 109 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~--~~iP---v~vk~~~~~~~~a~~ 109 (310)
+|++.--.++ ++|.+|+++||..++.| ++.++|.|+ ++.+..+++. +..| ++.|+++- +..|+
T Consensus 84 kG~ik~d~~~ae~A~~Yak~GAs~iSVL----Te~k~FkGs-----ledL~~irk~~~~k~p~~~lL~KeFiv--d~~QI 152 (289)
T KOG4201|consen 84 KGIIKLDANAAEQALAYAKGGASCISVL----TEPKWFKGS-----LEDLVAIRKIAGVKCPPKCLLRKEFIV--DPYQI 152 (289)
T ss_pred CCccccccCHHHHHHHHHhcCceeeeee----cCchhhccc-----HHHHHHHHHHhcCcCChHhHhHHHHcc--CHHHH
Confidence 3444444444 89999999999999777 678999988 7788877754 3566 77888865 45555
Q ss_pred HHH--cCCCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhc
Q 021609 110 LEA--IGIDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVM 185 (310)
Q Consensus 110 ~~~--aGad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~ 185 (310)
+++ .|||.|+ +...++..++..+++- ...++...+.+|+.+|..++.+.|+..|+++++.
T Consensus 153 ~~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~raleiGakvvGvNNRn---------------- 216 (289)
T KOG4201|consen 153 YEARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEIGAKVVGVNNRN---------------- 216 (289)
T ss_pred HHHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHhCcEEEeecCCc----------------
Confidence 555 9999996 6665666666555544 4578999999999999999999999999999863
Q ss_pred cceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHH
Q 021609 186 GDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 186 ~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a 265 (310)
+.++.- +......++..+++ .|++++..||.|++|+......|..+|+||.+++++.||.+.+
T Consensus 217 -----L~sFeV--------DlstTskL~E~i~k----Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i 279 (289)
T KOG4201|consen 217 -----LHSFEV--------DLSTTSKLLEGIPK----DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFI 279 (289)
T ss_pred -----cceeee--------chhhHHHHHhhCcc----ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccCHHHHH
Confidence 222221 12222334443332 3555589999999999999999999999999999999999887
Q ss_pred HHHH
Q 021609 266 QAIV 269 (310)
Q Consensus 266 ~~l~ 269 (310)
+.+.
T Consensus 280 ~eL~ 283 (289)
T KOG4201|consen 280 HELF 283 (289)
T ss_pred HHHh
Confidence 7664
No 26
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.69 E-value=2.3e-15 Score=135.89 Aligned_cols=198 Identities=21% Similarity=0.240 Sum_probs=139.9
Q ss_pred ceeecchhhhhhCccccc---CCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 24 FSVKVGLAQMLRGGVIMD---VVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 24 ~~~~~~~~~~~~~g~i~~---~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
+-++.|.++++.+|.... ..+| ++|+.|.+.|++++ ++|+.. .+ ...+.+.++++.+.+++|+++
T Consensus 10 idl~~G~~V~~~~g~~~~~~~~~dp~~~a~~~~~~g~~~l~ivDLd~~------~g---~~~n~~~i~~i~~~~~~pv~v 80 (241)
T PRK14024 10 VDVVDGQAVRLVQGEAGSETSYGSPLDAALAWQRDGAEWIHLVDLDAA------FG---RGSNRELLAEVVGKLDVKVEL 80 (241)
T ss_pred EEeECCEEEEeecccccCceECCCHHHHHHHHHHCCCCEEEEEecccc------CC---CCccHHHHHHHHHHcCCCEEE
Confidence 345667777776665222 2366 89999999999998 677522 11 234679999999999999999
Q ss_pred ccccCcHHHHHHHHHcCCCEEE-eCCCCCchhH-HHHHHhcCCCCcEEEecC--------------C-HHHHHHHHHhCC
Q 021609 98 KARIGHFVEAQILEAIGIDYVD-ESEVLTPADE-ENHINKHNFRIPFVCGCR--------------N-LGEALRRIREGA 160 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~-~~~i~~~~~~i~~~v~~~--------------t-~~ea~~~~~~Ga 160 (310)
...+...++++.+.++||+.+. ++..+..+++ .++++..+-.+.+.+++. + .+-+.++.+.|+
T Consensus 81 gGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~ 160 (241)
T PRK14024 81 SGGIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGC 160 (241)
T ss_pred cCCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCC
Confidence 9888888999999999999985 6666665555 444433322233333331 1 223444556777
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~ 240 (310)
+.+.+|+... +++ ..++++++++++++..++||+ ++|||+|++|+.+
T Consensus 161 ~~iiv~~~~~--------------------------~g~-----~~G~d~~~i~~i~~~~~ipvi--asGGi~s~~D~~~ 207 (241)
T PRK14024 161 SRYVVTDVTK--------------------------DGT-----LTGPNLELLREVCARTDAPVV--ASGGVSSLDDLRA 207 (241)
T ss_pred CEEEEEeecC--------------------------CCC-----ccCCCHHHHHHHHhhCCCCEE--EeCCCCCHHHHHH
Confidence 7777665432 221 125579999999988899998 8999999999999
Q ss_pred HHH---cCCCEEEEccccccCCCHHH
Q 021609 241 MMQ---LGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 241 ~l~---~GadgV~VGsai~~a~dp~~ 263 (310)
+.. .|+|||++|++++...-+..
T Consensus 208 l~~~~~~GvdgV~igra~~~g~~~~~ 233 (241)
T PRK14024 208 LAELVPLGVEGAIVGKALYAGAFTLP 233 (241)
T ss_pred HhhhccCCccEEEEeHHHHcCCCCHH
Confidence 864 59999999999998654443
No 27
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.68 E-value=1.6e-15 Score=141.43 Aligned_cols=190 Identities=18% Similarity=0.207 Sum_probs=145.2
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI 101 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~ 101 (310)
..|++++|+++ +.|..++++++|.++.++|+-+++.... .......+.++++++.++.|+.++...
T Consensus 6 ~~lgi~~Pii~----apM~~~s~~~la~avs~aGglG~l~~~~----------~~~~~l~~~i~~~~~~t~~pfgvn~~~ 71 (307)
T TIGR03151 6 DLLGIEYPIFQ----GGMAWVATGSLAAAVSNAGGLGIIGAGN----------APPDVVRKEIRKVKELTDKPFGVNIML 71 (307)
T ss_pred HHhCCCCCEEc----CCCCCCCCHHHHHHHHhCCCcceecccc----------CCHHHHHHHHHHHHHhcCCCcEEeeec
Confidence 46899999999 5566799999999999999888644310 000111356777787788999888654
Q ss_pred C---cHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 102 G---HFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 102 ~---~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
. ..+.++.+.+.|++.|..+.. .+.++.+.+++. ++.+++.+.+.++++++.++|+|+|.++|+..+++.
T Consensus 72 ~~~~~~~~~~~~~~~~v~~v~~~~g-~p~~~i~~lk~~--g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~---- 144 (307)
T TIGR03151 72 LSPFVDELVDLVIEEKVPVVTTGAG-NPGKYIPRLKEN--GVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHI---- 144 (307)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEcCC-CcHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCC----
Confidence 2 234557788999999965433 344566676654 678888999999999999999999999987544431
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
...+++.+++++++..++||+ ++|||.+++++.+++.+|||+|++||.|+-+
T Consensus 145 --------------------------g~~~~~~ll~~v~~~~~iPvi--aaGGI~~~~~~~~al~~GA~gV~iGt~f~~t 196 (307)
T TIGR03151 145 --------------------------GELTTMALVPQVVDAVSIPVI--AAGGIADGRGMAAAFALGAEAVQMGTRFLCA 196 (307)
T ss_pred --------------------------CCCcHHHHHHHHHHHhCCCEE--EECCCCCHHHHHHHHHcCCCEeecchHHhcc
Confidence 113457888889888889998 7899999999999999999999999999986
Q ss_pred CC
Q 021609 259 GD 260 (310)
Q Consensus 259 ~d 260 (310)
..
T Consensus 197 ~E 198 (307)
T TIGR03151 197 KE 198 (307)
T ss_pred cc
Confidence 53
No 28
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.67 E-value=4.7e-15 Score=133.68 Aligned_cols=196 Identities=22% Similarity=0.247 Sum_probs=136.3
Q ss_pred eeecchhhhhhCcc----cccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 25 SVKVGLAQMLRGGV----IMDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 25 ~~~~~~~~~~~~g~----i~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
.++.|.++++.+|. .....+| +.++.+.+.|++++ .+++... .....+.+.++++++.+++|+++
T Consensus 10 dl~~g~~v~~~~g~~~~~~~~~~~~~e~a~~~~~~G~~~l~i~dl~~~~--------~~~~~~~~~i~~i~~~~~~~l~v 81 (241)
T PRK13585 10 DMKGGKCVQLVQGEPGTETVSYGDPVEVAKRWVDAGAETLHLVDLDGAF--------EGERKNAEAIEKIIEAVGVPVQL 81 (241)
T ss_pred EeECCeEEEeeccccCCceEECCCHHHHHHHHHHcCCCEEEEEechhhh--------cCCcccHHHHHHHHHHcCCcEEE
Confidence 45566666666663 2234566 78999999999998 2332110 01234578999999999999999
Q ss_pred ccccCcHHHHHHHHHcCCCEEE-eCCCCCchhH-HHHHHhcCCC-CcEEEecC---------------C-HHHHHHHHHh
Q 021609 98 KARIGHFVEAQILEAIGIDYVD-ESEVLTPADE-ENHINKHNFR-IPFVCGCR---------------N-LGEALRRIRE 158 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~-~~~i~~~~~~-i~~~v~~~---------------t-~~ea~~~~~~ 158 (310)
...+...++++.+.++|||.|+ .+..++..++ .+..+..+.+ +.+.++++ + .+.++++.+.
T Consensus 82 ~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 161 (241)
T PRK13585 82 GGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEEL 161 (241)
T ss_pred cCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHc
Confidence 8877777889999999999996 5555543344 4444334433 44555543 2 3445556677
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHH
Q 021609 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADA 238 (310)
Q Consensus 159 Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~ 238 (310)
|++.+.++.....+. ..+.+++.++++++..++|++ ++|||++++|+
T Consensus 162 G~~~i~~~~~~~~g~-------------------------------~~g~~~~~i~~i~~~~~iPvi--a~GGI~~~~di 208 (241)
T PRK13585 162 GAGSILFTNVDVEGL-------------------------------LEGVNTEPVKELVDSVDIPVI--ASGGVTTLDDL 208 (241)
T ss_pred CCCEEEEEeecCCCC-------------------------------cCCCCHHHHHHHHHhCCCCEE--EeCCCCCHHHH
Confidence 888776654321110 124568889999888899998 78999999999
Q ss_pred HHHHHcCCCEEEEccccccCCCH
Q 021609 239 AMMMQLGCDGVFVGSGVFKSGDP 261 (310)
Q Consensus 239 ~~~l~~GadgV~VGsai~~a~dp 261 (310)
.++..+||++|++||++++.+.+
T Consensus 209 ~~~~~~Ga~gv~vgsa~~~~~~~ 231 (241)
T PRK13585 209 RALKEAGAAGVVVGSALYKGKFT 231 (241)
T ss_pred HHHHHcCCCEEEEEHHHhcCCcC
Confidence 99989999999999999985443
No 29
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=99.65 E-value=4.7e-15 Score=133.35 Aligned_cols=203 Identities=17% Similarity=0.208 Sum_probs=149.8
Q ss_pred eeecchhhhhhCcccccC------C-----CH--HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHh
Q 021609 25 SVKVGLAQMLRGGVIMDV------V-----TP--EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQ 89 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~~~------~-----~~--~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~ 89 (310)
-+..|.++||.+|.+.+. + +| ++|+.|.+.||+++ ++| |. . +.+.++++.+
T Consensus 8 Dl~~Gk~VrL~qG~~~~~~~~~~~~~~y~~~pp~~~A~~~~~~Ga~~lHvVDL-----------g~--~-n~~~i~~i~~ 73 (253)
T TIGR02129 8 DIHNGKVKQIVGGTLTSKKGSVLKTNFVSDKPSSYYAKLYKDDGVKGCHVIML-----------GP--N-NDDAAKEALH 73 (253)
T ss_pred EeeCCEEEEeeCcCccccccCCcceEEecCCCHHHHHHHHHHcCCCEEEEEEC-----------CC--C-cHHHHHHHHH
Confidence 356788888998887766 4 34 79999999999998 555 11 2 5789999999
Q ss_pred hcCcceeeccccCcHHHHHHHHHcCCCEEE-eCCCCC-----chhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHhCCCE
Q 021609 90 SVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESEVLT-----PADEENHINKHNFR-IPFVCGCRNLGEALRRIREGAAM 162 (310)
Q Consensus 90 ~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~~-----~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~Gad~ 162 (310)
.+++|+.+...+.. +.++.+.++||+.|+ ++..++ +..+.++.++++.+ +.+.+|++.. +.|-..
T Consensus 74 ~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~-------~~g~~~ 145 (253)
T TIGR02129 74 AYPGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKT-------QDGRWI 145 (253)
T ss_pred hCCCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEc-------CCCcEE
Confidence 99999999888776 899999999999996 554433 44555555556555 6677776410 012347
Q ss_pred EEEcCCCC-Cc-chH-HHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHH
Q 021609 163 IRTKGEAG-TG-NII-EAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 163 V~v~g~~~-~~-~~~-~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~ 239 (310)
|.++||.. ++ ++. +..+...+. ...-+++.+++|+++ .++++++++++++.+++||+ |+||+++.+|+.
T Consensus 146 V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl-----~G~dlel~~~l~~~~~ipVI--ASGGv~s~eDi~ 217 (253)
T TIGR02129 146 VAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLC-----KGIDEELVSKLGEWSPIPIT--YAGGAKSIDDLD 217 (253)
T ss_pred EEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCcc-----ccCCHHHHHHHHhhCCCCEE--EECCCCCHHHHH
Confidence 88899854 32 222 333333333 346677888888763 57789999999998999998 899999999999
Q ss_pred HHHHc--CCCEEEEcccccc
Q 021609 240 MMMQL--GCDGVFVGSGVFK 257 (310)
Q Consensus 240 ~~l~~--GadgV~VGsai~~ 257 (310)
++.+. |..++++|++|+.
T Consensus 218 ~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 218 LVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHhcCCCCcEEeeehHHH
Confidence 98655 6788999999985
No 30
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.65 E-value=1.7e-14 Score=129.33 Aligned_cols=202 Identities=17% Similarity=0.180 Sum_probs=142.1
Q ss_pred eeecchhhhhhCcccc---cCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeec
Q 021609 25 SVKVGLAQMLRGGVIM---DVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAK 98 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~---~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk 98 (310)
-++.|.++++++|... ...+| ++|+.|.+.||+++ ++||.. .+ ...+.+.++++.+.+..|+.+.
T Consensus 9 Dl~~G~~Vr~~~G~~~~~~~~~dP~~~a~~~~~~ga~~lhivDLd~a------~~---~~~n~~~i~~i~~~~~~~v~vG 79 (232)
T PRK13586 9 DISLGKAVKRIRGVKGTGLILGNPIEIASKLYNEGYTRIHVVDLDAA------EG---VGNNEMYIKEISKIGFDWIQVG 79 (232)
T ss_pred EEECCEEEEeeecCCCCceEcCCHHHHHHHHHHCCCCEEEEEECCCc------CC---CcchHHHHHHHHhhCCCCEEEe
Confidence 3556677777766431 22467 88999999999998 677522 11 1235789999988555699998
Q ss_pred cccCcHHHHHHHHHcCCCEEE-eCCCCCchhHHH-HHHhcCCC-CcEEEec-CCHHHHHHHHHhCCCEEEEcCCCCCcch
Q 021609 99 ARIGHFVEAQILEAIGIDYVD-ESEVLTPADEEN-HINKHNFR-IPFVCGC-RNLGEALRRIREGAAMIRTKGEAGTGNI 174 (310)
Q Consensus 99 ~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~-~i~~~~~~-i~~~v~~-~t~~ea~~~~~~Gad~V~v~g~~~~~~~ 174 (310)
..+...++++.+.+.||+.|+ ++..+..+++.+ .+++++.+ +.+-+|+ ++ ..|.++||..++
T Consensus 80 GGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~------------~~v~~~gw~~~~-- 145 (232)
T PRK13586 80 GGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNT------------KRVLIRGWKEKS-- 145 (232)
T ss_pred CCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCC------------CEEEccCCeeCC--
Confidence 888788999999999999996 666666555544 44444443 4455555 22 267788874433
Q ss_pred HHHHHHHHhhcc---ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 175 IEAVRHVRSVMG---DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 175 ~~~~~~~r~~~~---~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
.+..++++++.. ..-++++++.|++ ..++++++++.+++. ..|++ ++|||++.+|+.++.++|++|++|
T Consensus 146 ~~~~e~~~~l~~~g~~~ii~tdI~~dGt-----~~G~d~el~~~~~~~-~~~vi--asGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 146 MEVIDGIKKVNELELLGIIFTYISNEGT-----TKGIDYNVKDYARLI-RGLKE--YAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CCHHHHHHHHHhcCCCEEEEeccccccc-----CcCcCHHHHHHHHhC-CCCEE--EECCCCCHHHHHHHHHCCCCEEEE
Confidence 123344444332 2456777777765 357789999998875 55666 799999999999999999999999
Q ss_pred cccccc
Q 021609 252 GSGVFK 257 (310)
Q Consensus 252 Gsai~~ 257 (310)
|+||+.
T Consensus 218 g~Aly~ 223 (232)
T PRK13586 218 GMAFYL 223 (232)
T ss_pred ehhhhc
Confidence 999995
No 31
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.64 E-value=1.7e-14 Score=127.65 Aligned_cols=184 Identities=11% Similarity=0.054 Sum_probs=130.1
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~ 122 (310)
+.++.+.++|+.+| +| |.++-+. +......+.++++.+++|++++++ ++.+.+.|+|+|. ...
T Consensus 23 ~~l~~~l~~G~~~v-qL-------R~k~~~~~~~~~la~~l~~~~~~~~~~liInd~------~~lA~~~~adGVHlg~~ 88 (211)
T PRK03512 23 QWIERLLDAGVRTL-QL-------RIKDRRDEEVEADVVAAIALGRRYQARLFINDY------WRLAIKHQAYGVHLGQE 88 (211)
T ss_pred HHHHHHHhCCCCEE-EE-------cCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCH------HHHHHHcCCCEEEcChH
Confidence 56888899999876 87 3322110 011123334455677899998764 5568889999995 555
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHh
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~ 202 (310)
++++.+..+. .+.+..+.+++|+.+++.++.+.|+||+.+.+ . ++|.++.+.
T Consensus 89 d~~~~~~r~~---~~~~~~iG~S~H~~~e~~~A~~~gaDYi~lgp-v---------------------f~T~tK~~~--- 140 (211)
T PRK03512 89 DLETADLNAI---RAAGLRLGVSTHDDMEIDVALAARPSYIALGH-V---------------------FPTQTKQMP--- 140 (211)
T ss_pred hCCHHHHHHh---cCCCCEEEEeCCCHHHHHHHhhcCCCEEEECC-c---------------------cCCCCCCCC---
Confidence 5554444432 24567899999999999999999999998753 2 223222100
Q ss_pred hhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 203 AKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 203 ~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.....++.++++.+. .++||+++ ||| +++++.+++++|++||.+.|+|++++||...++++.+.+..+.
T Consensus 141 --~~~~G~~~l~~~~~~~~~~PV~Ai--GGI-~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~~~~~~~ 210 (211)
T PRK03512 141 --SAPQGLAQLARHVERLADYPTVAI--GGI-SLERAPAVLATGVGSIAVVSAITQAADWRAATAQLLELAEVGD 210 (211)
T ss_pred --CCCCCHHHHHHHHHhcCCCCEEEE--CCC-CHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHHHHhhcc
Confidence 011235556666554 47999955 999 6999999999999999999999999999999999999887654
No 32
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.64 E-value=1.5e-14 Score=128.73 Aligned_cols=182 Identities=15% Similarity=0.131 Sum_probs=129.8
Q ss_pred HHHHHHHHcC-CcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eC
Q 021609 46 EQARVAEEAG-ACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 46 ~~A~~~~~~G-a~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~ 121 (310)
+.++.+.++| +++| +| |.+.-+. +......++++++.+++|++++++ ++.+.+.|+|+|. ..
T Consensus 30 ~~l~~al~~G~v~~v-Ql-------R~K~l~~~~~~~~a~~l~~l~~~~gv~liINd~------~dlA~~~~adGVHLg~ 95 (221)
T PRK06512 30 KLLRAALQGGDVASV-IL-------PQYGLDEATFQKQAEKLVPVIQEAGAAALIAGD------SRIAGRVKADGLHIEG 95 (221)
T ss_pred HHHHHHHcCCCccEE-EE-------eCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeCH------HHHHHHhCCCEEEECc
Confidence 6788888999 6876 77 3222110 111123445556667899998874 5568889999996 55
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHH
Q 021609 122 EVLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVF 200 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~ 200 (310)
++....+.++. .+.+..++++ +++.+++..+.+.|+||+.+.+ .++. +.++
T Consensus 96 ~d~~~~~~r~~---~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gp-v~t~---------------------tK~~--- 147 (221)
T PRK06512 96 NLAALAEAIEK---HAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGK-LGAD---------------------NKPE--- 147 (221)
T ss_pred cccCHHHHHHh---cCCCCEEEecCCCCHHHHHHhhhcCCCEEEECC-CCCC---------------------CCCC---
Confidence 55555444443 2456778887 6778888888899999998754 2321 1100
Q ss_pred HhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 201 TFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 201 ~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
......+.++++++..++||++| ||| +++++.+++++|++||.+.|+|++++||...+++|.+.+..+.
T Consensus 148 ----~~p~gl~~l~~~~~~~~iPvvAI--GGI-~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~~~ 216 (221)
T PRK06512 148 ----AHPRNLSLAEWWAEMIEIPCIVQ--AGS-DLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDEKA 216 (221)
T ss_pred ----CCCCChHHHHHHHHhCCCCEEEE--eCC-CHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhhcc
Confidence 01223667777777788999955 999 7999999999999999999999999999999999999887654
No 33
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.63 E-value=2.6e-14 Score=128.06 Aligned_cols=194 Identities=26% Similarity=0.335 Sum_probs=133.8
Q ss_pred eeecchhhhhhCccc----ccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 25 SVKVGLAQMLRGGVI----MDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i----~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
-++.|.++++.+|.. ....+| +.|+.+.+.|++++ ++++.. +.+ ...+.+.++++++.+++|+++
T Consensus 7 dl~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~d~l~v~dl~~~------~~~--~~~~~~~i~~i~~~~~~pv~~ 78 (234)
T cd04732 7 DLKDGKCVRLYQGDYDKKTVYSDDPVEVAKKWEEAGAKWLHVVDLDGA------KGG--EPVNLELIEEIVKAVGIPVQV 78 (234)
T ss_pred EeECCEEEEeecccCCCCeEECCCHHHHHHHHHHcCCCEEEEECCCcc------ccC--CCCCHHHHHHHHHhcCCCEEE
Confidence 455667766666544 224566 78999999999998 344311 111 134578999999999999999
Q ss_pred ccccCcHHHHHHHHHcCCCEEE-eCCCCCchhH-HHHHHhcCC-CCcEEEec---------------CCHHH-HHHHHHh
Q 021609 98 KARIGHFVEAQILEAIGIDYVD-ESEVLTPADE-ENHINKHNF-RIPFVCGC---------------RNLGE-ALRRIRE 158 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~-~~~i~~~~~-~i~~~v~~---------------~t~~e-a~~~~~~ 158 (310)
...+...++++.+.+.|||.|+ .+..+...++ .+..+..+. .+.+.+++ .+..+ +....+.
T Consensus 79 ~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T cd04732 79 GGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEEL 158 (234)
T ss_pred eCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHc
Confidence 9888888899999999999996 4444443443 444443333 23333332 12223 3334566
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHH
Q 021609 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADA 238 (310)
Q Consensus 159 Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~ 238 (310)
|++.+.++.....+ . ..++++++++++++..++|++ ++|||++++|+
T Consensus 159 ga~~iii~~~~~~g--------------------------~-----~~g~~~~~i~~i~~~~~ipvi--~~GGi~~~~di 205 (234)
T cd04732 159 GVKAIIYTDISRDG--------------------------T-----LSGPNFELYKELAAATGIPVI--ASGGVSSLDDI 205 (234)
T ss_pred CCCEEEEEeecCCC--------------------------c-----cCCCCHHHHHHHHHhcCCCEE--EecCCCCHHHH
Confidence 77777666432111 0 124668899999988899998 78999999999
Q ss_pred HHHHHcCCCEEEEccccccCC
Q 021609 239 AMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 239 ~~~l~~GadgV~VGsai~~a~ 259 (310)
.++++.|||+|++||+++...
T Consensus 206 ~~~~~~Ga~gv~vg~~~~~~~ 226 (234)
T cd04732 206 KALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred HHHHHCCCCEEEEeHHHHcCC
Confidence 999999999999999999854
No 34
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.63 E-value=2.8e-14 Score=127.88 Aligned_cols=193 Identities=23% Similarity=0.275 Sum_probs=130.2
Q ss_pred eecchhhhhhCccccc----CCCH-HHHHHHHHcCCcEEE--eccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeec
Q 021609 26 VKVGLAQMLRGGVIMD----VVTP-EQARVAEEAGACAVM--ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAK 98 (310)
Q Consensus 26 ~~~~~~~~~~~g~i~~----~~~~-~~A~~~~~~Ga~~i~--~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk 98 (310)
++.|.++++.+|.... ..+| +.|+.|.+.|++++. +++.. ..| ...+.+.++++++.+++|+++.
T Consensus 9 ~~~g~~v~~~~G~~~~~~~~~~~~~~~a~~~~~~g~~~i~v~dld~~------~~g--~~~~~~~i~~i~~~~~~pv~~~ 80 (233)
T PRK00748 9 LKDGKCVRLYQGDYDQATVYSDDPVAQAKAWEDQGAKWLHLVDLDGA------KAG--KPVNLELIEAIVKAVDIPVQVG 80 (233)
T ss_pred EECCeEEEccccccccceEecCCHHHHHHHHHHcCCCEEEEEeCCcc------ccC--CcccHHHHHHHHHHCCCCEEEc
Confidence 3455555555554333 2355 789999999999983 44211 111 1345889999999999999999
Q ss_pred cccCcHHHHHHHHHcCCCEEE-eCCCCCch-hHHHHHHhcCCCCcEEEecC---------------CHHH-HHHHHHhCC
Q 021609 99 ARIGHFVEAQILEAIGIDYVD-ESEVLTPA-DEENHINKHNFRIPFVCGCR---------------NLGE-ALRRIREGA 160 (310)
Q Consensus 99 ~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~-~~~~~i~~~~~~i~~~v~~~---------------t~~e-a~~~~~~Ga 160 (310)
..+...++++.+.+.||+.|+ .+..++.. .+.+..+.....+.+.+++. +..+ ++.+.+.|+
T Consensus 81 GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~ 160 (233)
T PRK00748 81 GGIRSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGV 160 (233)
T ss_pred CCcCCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCC
Confidence 988888999999999999996 55444433 34444443322344444542 1122 222334456
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~ 240 (310)
+.+.++.. ++++. ..++++++++++++..++|++ ++|||++++|+.+
T Consensus 161 ~~ii~~~~--------------------------~~~g~-----~~G~d~~~i~~l~~~~~ipvi--a~GGi~~~~di~~ 207 (233)
T PRK00748 161 KAIIYTDI--------------------------SRDGT-----LSGPNVEATRELAAAVPIPVI--ASGGVSSLDDIKA 207 (233)
T ss_pred CEEEEeee--------------------------cCcCC-----cCCCCHHHHHHHHHhCCCCEE--EeCCCCCHHHHHH
Confidence 55444432 22221 134678999999988889998 7999999999999
Q ss_pred HHHcC-CCEEEEccccccCC
Q 021609 241 MMQLG-CDGVFVGSGVFKSG 259 (310)
Q Consensus 241 ~l~~G-adgV~VGsai~~a~ 259 (310)
+++.| |+||++|++++...
T Consensus 208 ~~~~g~~~gv~vg~a~~~~~ 227 (233)
T PRK00748 208 LKGLGAVEGVIVGRALYEGK 227 (233)
T ss_pred HHHcCCccEEEEEHHHHcCC
Confidence 99988 99999999999743
No 35
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.63 E-value=3e-14 Score=127.54 Aligned_cols=193 Identities=23% Similarity=0.286 Sum_probs=131.0
Q ss_pred eecchhhhhhCccccc----CCCH-HHHHHHHHcCCcEEE--eccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeec
Q 021609 26 VKVGLAQMLRGGVIMD----VVTP-EQARVAEEAGACAVM--ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAK 98 (310)
Q Consensus 26 ~~~~~~~~~~~g~i~~----~~~~-~~A~~~~~~Ga~~i~--~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk 98 (310)
++.|.++++.+|.... ..+| +.|+.|.+.|+++++ +|+.. +.| ...+.+.++++++.+++|++++
T Consensus 7 ~~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~~------~~g--~~~~~~~i~~i~~~~~~pi~~g 78 (230)
T TIGR00007 7 IKDGKCVRLYQGDYDKETVYGDDPVEAAKKWEEEGAERIHVVDLDGA------KEG--GPVNLPVIKKIVRETGVPVQVG 78 (230)
T ss_pred eeCCEEEEeeccccCcceEecCCHHHHHHHHHHcCCCEEEEEeCCcc------ccC--CCCcHHHHHHHHHhcCCCEEEe
Confidence 3445555444443222 2356 789999999999983 44311 111 1345789999999999999999
Q ss_pred cccCcHHHHHHHHHcCCCEEE-eCCCCC-chhHHHHHHhcCCC-CcEEEecC---------------C-HHHHHHHHHhC
Q 021609 99 ARIGHFVEAQILEAIGIDYVD-ESEVLT-PADEENHINKHNFR-IPFVCGCR---------------N-LGEALRRIREG 159 (310)
Q Consensus 99 ~~~~~~~~a~~~~~aGad~Vi-~~~~~~-~~~~~~~i~~~~~~-i~~~v~~~---------------t-~~ea~~~~~~G 159 (310)
.++...++++.+.++|||.|+ .+..+. +..+.+..+..+.. +.+.++++ + .+-++++.+.|
T Consensus 79 gGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g 158 (230)
T TIGR00007 79 GGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG 158 (230)
T ss_pred CCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC
Confidence 988888999999999999996 444444 44445555544433 44433422 2 22234455667
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHH
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~ 239 (310)
++.+.++... .++. ..+.++++++++++..++|++ ++|||++++|+.
T Consensus 159 ~~~ii~~~~~--------------------------~~g~-----~~g~~~~~i~~i~~~~~ipvi--a~GGi~~~~di~ 205 (230)
T TIGR00007 159 LEGIIYTDIS--------------------------RDGT-----LSGPNFELTKELVKAVNVPVI--ASGGVSSIDDLI 205 (230)
T ss_pred CCEEEEEeec--------------------------CCCC-----cCCCCHHHHHHHHHhCCCCEE--EeCCCCCHHHHH
Confidence 7655544321 1111 124568889999888889998 799999999999
Q ss_pred HHHHcCCCEEEEccccccCC
Q 021609 240 MMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 240 ~~l~~GadgV~VGsai~~a~ 259 (310)
+++..|||+|++||+++...
T Consensus 206 ~~~~~Gadgv~ig~a~~~~~ 225 (230)
T TIGR00007 206 ALKKLGVYGVIVGKALYEGK 225 (230)
T ss_pred HHHHCCCCEEEEeHHHHcCC
Confidence 99999999999999999743
No 36
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=99.62 E-value=1.8e-14 Score=135.66 Aligned_cols=181 Identities=20% Similarity=0.226 Sum_probs=132.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~ 122 (310)
+.+..+.++|+.+| +| |.+..+. +......+..+++.++++++++++ ++.+.+.|+|+|. ...
T Consensus 161 ~~l~~al~~Gv~~V-QL-------R~K~~~~~~~~~~a~~L~~l~~~~~~~lIIND~------vdlAl~~~aDGVHLgq~ 226 (347)
T PRK02615 161 EVVEAALKGGVTLV-QY-------RDKTADDRQRLEEAKKLKELCHRYGALFIVNDR------VDIALAVDADGVHLGQE 226 (347)
T ss_pred HHHHHHHHcCCCEE-EE-------CCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCh------HHHHHHcCCCEEEeChh
Confidence 45777888998875 77 3222110 111234556667778899998775 4578889999996 445
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHh
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~ 202 (310)
+++..+..+. .+++..+++++||.+++..+.+.|+|||.+.+-..| .++.+
T Consensus 227 dl~~~~aR~l---lg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T----------------------~tKp~---- 277 (347)
T PRK02615 227 DLPLAVARQL---LGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPT----------------------PTKPG---- 277 (347)
T ss_pred hcCHHHHHHh---cCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCC----------------------CCCCC----
Confidence 5554444433 356678999999999999999999999998642222 22110
Q ss_pred hhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 203 AKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 203 ~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
.....++.++.+++..++|++ |.||| +++++.+++.+|++||.|+++|++++||...++.|.+.++.
T Consensus 278 --~~~~Gle~l~~~~~~~~iPv~--AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~ 344 (347)
T PRK02615 278 --KAPAGLEYLKYAAKEAPIPWF--AIGGI-DKSNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSR 344 (347)
T ss_pred --CCCCCHHHHHHHHHhCCCCEE--EECCC-CHHHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhc
Confidence 012347788888877789999 45999 69999999999999999999999999999999988887764
No 37
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.62 E-value=1.7e-14 Score=138.13 Aligned_cols=186 Identities=15% Similarity=0.068 Sum_probs=133.3
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eC
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~ 121 (310)
.+.++.+.++|++.| +| |.+.-+. +......+.++.+.++++++++++ .+.+.+.|+|+|. +.
T Consensus 220 ~~~ve~aL~aGv~~V-QL-------ReK~ls~~el~~la~~l~~l~~~~gv~LiIND~------~dlAl~~gAdGVHLGQ 285 (437)
T PRK12290 220 VEWIERLLPLGINTV-QL-------RIKDPQQADLEQQIIRAIALGREYNAQVFINDY------WQLAIKHQAYGVHLGQ 285 (437)
T ss_pred HHHHHHHHhCCCCEE-EE-------eCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECH------HHHHHHcCCCEEEcCh
Confidence 367888999999976 88 3322110 011123344445667899998774 5678889999995 66
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHH
Q 021609 122 EVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~ 201 (310)
++++..+.++.+ +.+..+++++|+.+|+.++.+.|+|||.+.. +++|.++..-
T Consensus 286 eDL~~~~aR~il---g~~~iIGvStHs~eEl~~A~~~gaDYI~lGP----------------------IFpT~TK~~~-- 338 (437)
T PRK12290 286 EDLEEANLAQLT---DAGIRLGLSTHGYYELLRIVQIQPSYIALGH----------------------IFPTTTKQMP-- 338 (437)
T ss_pred HHcchhhhhhhc---CCCCEEEEecCCHHHHHHHhhcCCCEEEECC----------------------ccCCCCCCCC--
Confidence 666665555443 4578899999999999999999999998753 2334332100
Q ss_pred hhhccCCcHHHHHHHhhc---------CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 202 FAKKIAAPYDLVMQTKQL---------GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 202 ~~~~~~~~~~~i~~i~~~---------~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
...-.++.++++++. .++|+++| ||| +++++.+++++|++||.|-|+|++++||...+++|.+.+
T Consensus 339 ---~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI--GGI-~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~ 412 (437)
T PRK12290 339 ---SKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI--GGI-DQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVM 412 (437)
T ss_pred ---CCCCCHHHHHHHHHHhhhccccccCCCCEEEE--CCc-CHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHH
Confidence 011225555544433 26999966 999 799999999999999999999999999999999999988
Q ss_pred hccCC
Q 021609 273 THYSD 277 (310)
Q Consensus 273 ~~~~~ 277 (310)
+....
T Consensus 413 ~~~~~ 417 (437)
T PRK12290 413 AENQL 417 (437)
T ss_pred hhcCC
Confidence 87654
No 38
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=99.62 E-value=3.3e-14 Score=128.36 Aligned_cols=207 Identities=14% Similarity=0.062 Sum_probs=147.5
Q ss_pred eeecchhhhhhCcccccC---CCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeec
Q 021609 25 SVKVGLAQMLRGGVIMDV---VTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAK 98 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~~~---~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk 98 (310)
-++.|.++++.+|...+. .+| +.++.+.+.|+.++ ++|+.. .+ ...+.+.++++.+.+++|+.+.
T Consensus 10 Dl~~G~vVrl~~G~~~~~~~y~~p~~~a~~~~~~g~~~lhivDLd~a------~g---~~~n~~~i~~i~~~~~~~v~vg 80 (243)
T TIGR01919 10 DVNGGAAVRLQQGAGGSKTYYGSLESAAKWWEQGGAEWIHLVDLDAA------FG---GGNNEMMLEEVVKLLVVVEELS 80 (243)
T ss_pred EEECCEEEEeecCCCCCceecCCHHHHHHHHHhCCCeEEEEEECCCC------CC---CcchHHHHHHHHHHCCCCEEEc
Confidence 356777888887754333 355 67888999999887 566421 11 2345789999999999999999
Q ss_pred cccCcHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhC-CCEEEEcCCCCCcchH
Q 021609 99 ARIGHFVEAQILEAIGIDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREG-AAMIRTKGEAGTGNII 175 (310)
Q Consensus 99 ~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~G-ad~V~v~g~~~~~~~~ 175 (310)
..+...++++.+.+.|++.|+ ++..++.+++.+.+.+ ++..+.+.+|... -| -..+.++||..++ .
T Consensus 81 GGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~---------~g~~~~v~~~Gw~~~~--~ 149 (243)
T TIGR01919 81 GGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLE---------DGEWHTLGNRGWSDGG--G 149 (243)
T ss_pred CCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEec---------CCceEEEECCCeecCC--C
Confidence 888888999999999999996 6666666666544443 4323445555531 02 1256777885433 2
Q ss_pred HHHHHHHhhcc---ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHH---HcCCCEE
Q 021609 176 EAVRHVRSVMG---DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM---QLGCDGV 249 (310)
Q Consensus 176 ~~~~~~r~~~~---~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l---~~GadgV 249 (310)
+..++++++.. ..-+++++++|++ ..++++++++++++.+++||+ ++|||++.+|+.++. ..|++||
T Consensus 150 ~~~~~~~~~~~~g~~~ii~tdI~~dGt-----~~G~d~~l~~~l~~~~~~pvi--asGGv~s~eDl~~l~~l~~~Gv~gv 222 (243)
T TIGR01919 150 DLEVLERLLDSGGCSRVVVTDSKKDGL-----SGGPNELLLEVVAARTDAIVA--ASGGSSLLDDLRAIKYLDEGGVSVA 222 (243)
T ss_pred cHHHHHHHHHhCCCCEEEEEecCCccc-----CCCcCHHHHHHHHhhCCCCEE--EECCcCCHHHHHHHHhhccCCeeEE
Confidence 34444444332 2566777787765 257789999999988899998 899999999999875 3599999
Q ss_pred EEccccccC
Q 021609 250 FVGSGVFKS 258 (310)
Q Consensus 250 ~VGsai~~a 258 (310)
++|++|+.-
T Consensus 223 ivg~Al~~g 231 (243)
T TIGR01919 223 IGGKLLYAR 231 (243)
T ss_pred EEhHHHHcC
Confidence 999999973
No 39
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=99.61 E-value=2e-15 Score=135.33 Aligned_cols=207 Identities=28% Similarity=0.355 Sum_probs=145.6
Q ss_pred eeecchhhhhhCccc----ccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 25 SVKVGLAQMLRGGVI----MDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i----~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
-++.|.++++.+|.. .+..+| ++|+.|.+.|++++ ++||... .| ...+.+.++++.+.+.+|+++
T Consensus 7 Dl~~G~~Vr~~~G~~~~~~~~~~dP~~~a~~~~~~g~~~l~ivDLdaa~------~g--~~~n~~~i~~i~~~~~~~i~v 78 (229)
T PF00977_consen 7 DLKNGRVVRLVKGDRFSETVYSGDPVEVAKAFNEQGADELHIVDLDAAK------EG--RGSNLELIKEIAKETGIPIQV 78 (229)
T ss_dssp EEETTEEEEESTTCCSCEECECCCHHHHHHHHHHTT-SEEEEEEHHHHC------CT--HHHHHHHHHHHHHHSSSEEEE
T ss_pred EEECCEEEECCCeecceeeEECcCHHHHHHHHHHcCCCEEEEEEccCcc------cC--chhHHHHHHHHHhcCCccEEE
Confidence 456778888888865 445677 88999999999998 6775221 11 123468999999999999999
Q ss_pred ccccCcHHHHHHHHHcCCCEEE-eCCCCC-chhHHHHHHhcCC-CCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCC--c
Q 021609 98 KARIGHFVEAQILEAIGIDYVD-ESEVLT-PADEENHINKHNF-RIPFVCGCRNLGEALRRIREGAAMIRTKGEAGT--G 172 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi-~~~~~~-~~~~~~~i~~~~~-~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~--~ 172 (310)
...+...++++.+.++||+.|+ .+..+. +..+.++.+.++. .+.+.+|++. | ..+.+++|... -
T Consensus 79 gGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~----------g-~~v~~~gw~~~~~~ 147 (229)
T PF00977_consen 79 GGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARD----------G-YKVATNGWQESSGI 147 (229)
T ss_dssp ESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEE----------T-EEEEETTTTEEEEE
T ss_pred eCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeee----------c-eEEEecCccccCCc
Confidence 9888888999999999999986 555544 4445555555555 3666667644 2 35677887532 2
Q ss_pred chHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 173 NIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 173 ~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
++.+..+.+.+.....-++++++.|++ ..++++++++++++..++|++ ++|||++.+|+.++...|+++|++|
T Consensus 148 ~~~~~~~~~~~~g~~~ii~tdi~~dGt-----~~G~d~~~~~~l~~~~~~~vi--asGGv~~~~Dl~~l~~~G~~gvivg 220 (229)
T PF00977_consen 148 DLEEFAKRLEELGAGEIILTDIDRDGT-----MQGPDLELLKQLAEAVNIPVI--ASGGVRSLEDLRELKKAGIDGVIVG 220 (229)
T ss_dssp EHHHHHHHHHHTT-SEEEEEETTTTTT-----SSS--HHHHHHHHHHHSSEEE--EESS--SHHHHHHHHHTTECEEEES
T ss_pred CHHHHHHHHHhcCCcEEEEeeccccCC-----cCCCCHHHHHHHHHHcCCCEE--EecCCCCHHHHHHHHHCCCcEEEEe
Confidence 334444444444444557777777765 356789999999887899998 7999999999999999999999999
Q ss_pred ccccc
Q 021609 253 SGVFK 257 (310)
Q Consensus 253 sai~~ 257 (310)
++|+.
T Consensus 221 ~al~~ 225 (229)
T PF00977_consen 221 SALHE 225 (229)
T ss_dssp HHHHT
T ss_pred hHhhC
Confidence 99985
No 40
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.61 E-value=1.3e-13 Score=124.59 Aligned_cols=180 Identities=19% Similarity=0.240 Sum_probs=128.8
Q ss_pred CH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eC
Q 021609 44 TP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 44 ~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~ 121 (310)
++ +.++.+++.|+++++.++-. + .|.....+.+.++++++.+++|+++...+...++++.+.+.|++.|+ .+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~----~--~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~ 101 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDIT----A--SSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINS 101 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCC----c--ccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECc
Confidence 55 88999999999988433311 0 11112346789999999999999999888888899999999999996 44
Q ss_pred CCCC-chhHHHHHHhcCCC-CcEEEecC---------------------CHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 122 EVLT-PADEENHINKHNFR-IPFVCGCR---------------------NLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 122 ~~~~-~~~~~~~i~~~~~~-i~~~v~~~---------------------t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
..+. |..+.++.+..+.+ +.+.+++. +.+.++.+.+.|++++.+++....+.
T Consensus 102 ~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~----- 176 (243)
T cd04731 102 AAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT----- 176 (243)
T ss_pred hhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCC-----
Confidence 4443 43344444443322 44444432 23445667778999888876432111
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc-CCCEEEEcccccc
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFK 257 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~-GadgV~VGsai~~ 257 (310)
..+.++++++++++..++||+ ++|||++++|+.++++. |||+|++|++++.
T Consensus 177 --------------------------~~g~~~~~i~~i~~~~~~pvi--a~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 177 --------------------------KKGYDLELIRAVSSAVNIPVI--ASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred --------------------------CCCCCHHHHHHHHhhCCCCEE--EeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 124568889999888899998 78999999999999986 9999999999998
Q ss_pred CCCHH
Q 021609 258 SGDPV 262 (310)
Q Consensus 258 a~dp~ 262 (310)
.....
T Consensus 229 ~~~~~ 233 (243)
T cd04731 229 GEYTI 233 (243)
T ss_pred CCCCH
Confidence 55543
No 41
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=99.60 E-value=1.3e-13 Score=124.01 Aligned_cols=205 Identities=21% Similarity=0.277 Sum_probs=140.4
Q ss_pred eeecchhhhhhCcccc----------cCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhc
Q 021609 25 SVKVGLAQMLRGGVIM----------DVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSV 91 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~----------~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~ 91 (310)
-++.|.++++.+|... +..+| ++|+.|.+.|++++ ++|+.. .+ ...+.+.++++.+.+
T Consensus 7 Dl~~G~~V~~~~G~~~~~~p~~~~~~~~~dp~~~a~~~~~~g~~~l~i~DLd~~------~~---~~~n~~~i~~i~~~~ 77 (233)
T cd04723 7 DLKDGVVVHGVGGDRDNYRPITSNLCSTSDPLDVARAYKELGFRGLYIADLDAI------MG---RGDNDEAIRELAAAW 77 (233)
T ss_pred ECcCCEEEEeeccChhhccccccCcccCCCHHHHHHHHHHCCCCEEEEEeCccc------cC---CCccHHHHHHHHHhC
Confidence 4556777777776632 23466 79999999999998 677522 11 234588999999999
Q ss_pred CcceeeccccCcHHHHHHHHHcCCCEEE-eCCCCCchhHH-HHHHhcCC-CCcEEEecCCHHHHHHHHHhCCCEEEEcCC
Q 021609 92 TIPVMAKARIGHFVEAQILEAIGIDYVD-ESEVLTPADEE-NHINKHNF-RIPFVCGCRNLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 92 ~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~-~~i~~~~~-~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~ 168 (310)
.+|+++...+...++++.+..+||+.|+ .+..+.. ++. +.+++++. .+.+.++++..+ +. . .
T Consensus 78 ~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~------------~~-~-~ 142 (233)
T cd04723 78 PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQ------------LL-K-P 142 (233)
T ss_pred CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCe------------ec-c-c
Confidence 9999998888788999999999999986 6666666 554 44444433 355555654320 00 0 0
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
....++.+..+...+. ...-++.+++.++. ..++++++++++.+..++|++ ++|||++.+|+.+++.+|+++
T Consensus 143 ~~~~~~~~~~~~~~~~-~~~li~~di~~~G~-----~~g~~~~~~~~i~~~~~ipvi--~~GGi~s~edi~~l~~~G~~~ 214 (233)
T cd04723 143 TDFIGPEELLRRLAKW-PEELIVLDIDRVGS-----GQGPDLELLERLAARADIPVI--AAGGVRSVEDLELLKKLGASG 214 (233)
T ss_pred cCcCCHHHHHHHHHHh-CCeEEEEEcCcccc-----CCCcCHHHHHHHHHhcCCCEE--EeCCCCCHHHHHHHHHcCCCE
Confidence 0111233444444444 33334444444332 245678899999888899998 789999999999999999999
Q ss_pred EEEccccccCCCH
Q 021609 249 VFVGSGVFKSGDP 261 (310)
Q Consensus 249 V~VGsai~~a~dp 261 (310)
|++||+++...-+
T Consensus 215 vivGsal~~g~~~ 227 (233)
T cd04723 215 ALVASALHDGGLT 227 (233)
T ss_pred EEEehHHHcCCCC
Confidence 9999999985433
No 42
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.59 E-value=4.2e-14 Score=133.38 Aligned_cols=207 Identities=20% Similarity=0.279 Sum_probs=136.8
Q ss_pred cCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc
Q 021609 21 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR 100 (310)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~ 100 (310)
-..|+|++|+++ +.|.+++++++|.++.++|.-+++.....+. ....+.++++++.++-|+.++..
T Consensus 5 t~~lgi~~PIiq----apM~~is~~~LaaAVs~aGglG~l~~~~~~~----------~~l~~~i~~~~~~t~~pfgvnl~ 70 (330)
T PF03060_consen 5 TELLGIKYPIIQ----APMGGISTPELAAAVSNAGGLGFLGAGGLTP----------EQLREEIRKIRALTDKPFGVNLF 70 (330)
T ss_dssp HHHHT-SSSEEE-------TTTSSHHHHHHHHHTTSBEEEECTTSSH----------HHHHHHHHHHHHH-SS-EEEEEE
T ss_pred HHHhCCCcCEEc----CCCCCCChHHHHHHHHhCCCEeeccccccCh----------HHHHHHHHHHHhhcccccccccc
Confidence 356899999999 5667799999999999999998754311100 01135777778888889998765
Q ss_pred cCc---HHH------------HHHHHHcCCC--------------EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHH
Q 021609 101 IGH---FVE------------AQILEAIGID--------------YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGE 151 (310)
Q Consensus 101 ~~~---~~~------------a~~~~~aGad--------------~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~e 151 (310)
... ... .+...+.|+. .|..+...++.+..+.++. .++.++..+.|.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~--~gi~v~~~v~s~~~ 148 (330)
T PF03060_consen 71 LPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPPEVIERLHA--AGIKVIPQVTSVRE 148 (330)
T ss_dssp TTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-HHHHHHHHH--TT-EEEEEESSHHH
T ss_pred ccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchHHHHHHHHH--cCCccccccCCHHH
Confidence 421 111 2344455555 8876666666777777654 57889999999999
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGG 231 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GG 231 (310)
++++.+.|+|.|.+.|+..+||.- ......+.++.++++..++||+ ++||
T Consensus 149 A~~a~~~G~D~iv~qG~eAGGH~g----------------------------~~~~~~~~L~~~v~~~~~iPVi--aAGG 198 (330)
T PF03060_consen 149 ARKAAKAGADAIVAQGPEAGGHRG----------------------------FEVGSTFSLLPQVRDAVDIPVI--AAGG 198 (330)
T ss_dssp HHHHHHTT-SEEEEE-TTSSEE-------------------------------SSG-HHHHHHHHHHH-SS-EE--EESS
T ss_pred HHHhhhcCCCEEEEeccccCCCCC----------------------------ccccceeeHHHHHhhhcCCcEE--EecC
Confidence 999999999999999887666621 0112347788889888899998 7899
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 232 I~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
|.+.+++..++.+|||||++||+|+-++... ....+++.+.+
T Consensus 199 I~dg~~iaaal~lGA~gV~~GTrFl~t~Es~-~~~~~K~~l~~ 240 (330)
T PF03060_consen 199 IADGRGIAAALALGADGVQMGTRFLATEESG-ASDAYKQALVD 240 (330)
T ss_dssp --SHHHHHHHHHCT-SEEEESHHHHTSTTS--S-HHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCEeecCCeEEeccccc-ChHHHHHHHHh
Confidence 9999999999999999999999999865422 22335555543
No 43
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.58 E-value=2.2e-13 Score=123.80 Aligned_cols=183 Identities=19% Similarity=0.210 Sum_probs=125.9
Q ss_pred ccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCC
Q 021609 40 MDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGID 116 (310)
Q Consensus 40 ~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad 116 (310)
.+..+| +.|+.+++.|++++ .++++.. .....+.+.++++++.+++|+++...+...++++.+.+.|++
T Consensus 27 ~~~~d~~~~a~~~~~~G~~~i~i~dl~~~~--------~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~ 98 (253)
T PRK02083 27 RDAGDPVELAKRYNEEGADELVFLDITASS--------EGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGAD 98 (253)
T ss_pred eecCCHHHHHHHHHHcCCCEEEEEeCCccc--------ccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCC
Confidence 345566 88999999999998 3443210 111345889999999999999998888888999999999999
Q ss_pred EEE-eCCCCCchhH-HHHHHhcCCC-CcEEEecCC----------------------HHHHHHHHHhCCCEEEEcCCCCC
Q 021609 117 YVD-ESEVLTPADE-ENHINKHNFR-IPFVCGCRN----------------------LGEALRRIREGAAMIRTKGEAGT 171 (310)
Q Consensus 117 ~Vi-~~~~~~~~~~-~~~i~~~~~~-i~~~v~~~t----------------------~~ea~~~~~~Gad~V~v~g~~~~ 171 (310)
.|+ .+..+..+++ .+..+..+.+ +.+.+++.+ .+.+.++.+.|++.+.++..
T Consensus 99 ~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i--- 175 (253)
T PRK02083 99 KVSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSM--- 175 (253)
T ss_pred EEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCC---
Confidence 996 4444443344 4444334323 444555432 22334455566666555432
Q ss_pred cchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEE
Q 021609 172 GNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVF 250 (310)
Q Consensus 172 ~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~ 250 (310)
+++++ ..++++++++++++..++|++ ++|||++++|+.++++ .|+++|+
T Consensus 176 -----------------------~~~g~-----~~g~d~~~i~~~~~~~~ipvi--a~GGv~s~~d~~~~~~~~G~~gvi 225 (253)
T PRK02083 176 -----------------------DRDGT-----KNGYDLELTRAVSDAVNVPVI--ASGGAGNLEHFVEAFTEGGADAAL 225 (253)
T ss_pred -----------------------cCCCC-----CCCcCHHHHHHHHhhCCCCEE--EECCCCCHHHHHHHHHhCCccEEe
Confidence 11111 134568899999888889998 7899999999999996 5999999
Q ss_pred EccccccCCCHHH
Q 021609 251 VGSGVFKSGDPVK 263 (310)
Q Consensus 251 VGsai~~a~dp~~ 263 (310)
+|++++.-..+..
T Consensus 226 vg~al~~~~~~~~ 238 (253)
T PRK02083 226 AASIFHFGEITIG 238 (253)
T ss_pred EhHHHHcCCCCHH
Confidence 9999997544443
No 44
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.58 E-value=3.6e-13 Score=122.83 Aligned_cols=195 Identities=15% Similarity=0.242 Sum_probs=124.3
Q ss_pred CCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 43 VTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 43 ~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.+| ++|+.|.+.|++++ ++|+.. +.....+.+.++++.+.+++|+++...+...++++.+.+.|++.|+
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~--------~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vv 101 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDAS--------KRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVS 101 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCC--------cCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEE
Confidence 466 78999999999998 455311 1112456899999999899999998887777889999999999996
Q ss_pred -eCCCCCchhH-HHHHHhcCCC-CcEEEecCCHHHHHHHHHhCCCEEEEcCCCC-Cc-chHHHHHHHHhhccceEeeccc
Q 021609 120 -ESEVLTPADE-ENHINKHNFR-IPFVCGCRNLGEALRRIREGAAMIRTKGEAG-TG-NIIEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 120 -~~~~~~~~~~-~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~-~~-~~~~~~~~~r~~~~~~~~l~~~ 194 (310)
.+..++..++ .++++..+.+ +.+.++++.. ..|...+.++||.. +. .+.+..+...+.....-+++..
T Consensus 102 igs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g-------~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i 174 (258)
T PRK01033 102 INTAALEDPDLITEAAERFGSQSVVVSIDVKKN-------LGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSI 174 (258)
T ss_pred EChHHhcCHHHHHHHHHHhCCCcEEEEEEEecC-------CCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEcc
Confidence 5544454444 4444444322 4444454321 00111233333311 00 1111111111111112222333
Q ss_pred ChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCC
Q 021609 195 DDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~ 259 (310)
+.+++ ..++++++++++++..++||+ ++|||++.+|+.+++ ..|+|||++|++|.-.+
T Consensus 175 ~~~G~-----~~G~d~~~i~~~~~~~~ipvI--asGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~ 233 (258)
T PRK01033 175 DRDGT-----MKGYDLELLKSFRNALKIPLI--ALGGAGSLDDIVEAILNLGADAAAAGSLFVFKG 233 (258)
T ss_pred CCCCC-----cCCCCHHHHHHHHhhCCCCEE--EeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCc
Confidence 33332 135679999999988899998 899999999999999 79999999999999863
No 45
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.8e-14 Score=135.20 Aligned_cols=147 Identities=31% Similarity=0.458 Sum_probs=114.0
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----HhhcC-cceeeccccCcHHHHHHHHHcCCCE
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSVT-IPVMAKARIGHFVEAQILEAIGIDY 117 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~~-iPv~vk~~~~~~~~a~~~~~aGad~ 117 (310)
+.|+.+++.|++.| +|| |+++..+...|++++.+++.+.++ +++++ +||.+|.|+|+.+.
T Consensus 83 eaA~~~~~~g~~~I-dlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~----------- 150 (323)
T COG0042 83 EAAKIAEELGADII-DLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDD----------- 150 (323)
T ss_pred HHHHHHHhcCCCEE-eeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcc-----------
Confidence 56788899998876 998 888888888899999999877765 56674 99999999986321
Q ss_pred EEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChh
Q 021609 118 VDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDD 197 (310)
Q Consensus 118 Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d 197 (310)
+ ....+-++.+.+.|++.+.+|+++... .+
T Consensus 151 ----------~-----------------~~~~~ia~~~~~~g~~~ltVHgRtr~~-------------------~y---- 180 (323)
T COG0042 151 ----------D-----------------ILALEIARILEDAGADALTVHGRTRAQ-------------------GY---- 180 (323)
T ss_pred ----------c-----------------ccHHHHHHHHHhcCCCEEEEecccHHh-------------------cC----
Confidence 0 011223555667899999999975210 00
Q ss_pred HHHHhhhccCCcHHHHHHHhhcCC-CCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHH
Q 021609 198 EVFTFAKKIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~i~~~~~-iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~~a 265 (310)
....+++.++++++..+ +||+ ++|+|.|++|+.++++ .|+||||+|++.+. ||+...
T Consensus 181 -------~~~ad~~~I~~vk~~~~~ipvi--~NGdI~s~~~a~~~l~~tg~DgVMigRga~~--nP~l~~ 239 (323)
T COG0042 181 -------LGPADWDYIKELKEAVPSIPVI--ANGDIKSLEDAKEMLEYTGADGVMIGRGALG--NPWLFR 239 (323)
T ss_pred -------CCccCHHHHHHHHHhCCCCeEE--eCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc--CCcHHH
Confidence 12357999999999877 9998 8999999999999996 68999999999997 777544
No 46
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=99.57 E-value=1.2e-13 Score=122.63 Aligned_cols=172 Identities=26% Similarity=0.360 Sum_probs=132.0
Q ss_pred HHHHHHHHcCCCEEEe----CC--CCCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHh-----CCCEEE--EcCC--
Q 021609 105 VEAQILEAIGIDYVDE----SE--VLTPADEENHINKHNFR-IPFVCGCRNLGEALRRIRE-----GAAMIR--TKGE-- 168 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~----~~--~~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~-----Gad~V~--v~g~-- 168 (310)
...+.+.++|++.|.. .+ ......+.+.+...++. ++++.+|+|.+||.+.+++ |-++|+ +.+.
T Consensus 24 ~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~ 103 (248)
T cd04728 24 IMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDKSGYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDK 103 (248)
T ss_pred HHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence 3345666788888841 11 12345667777655555 8999999999999987653 668887 4443
Q ss_pred CCCcchHHHHHHHHhhccc-eEeecccChhHHHHhh------hccC------------CcHHHHHHHhhcCCCCEEEeCC
Q 021609 169 AGTGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTFA------KKIA------------APYDLVMQTKQLGRLPVVHFAA 229 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~~------~~~~------------~~~~~i~~i~~~~~iPVi~iA~ 229 (310)
...+++.+++++.+++... |.++|++.+|....-. .-.. ...++++.+++..++||+ +.
T Consensus 104 ~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI--~e 181 (248)
T cd04728 104 TLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVI--VD 181 (248)
T ss_pred ccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEE--Ee
Confidence 2366788999999998777 9999999988776210 0011 136788888887789998 78
Q ss_pred CCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCCh
Q 021609 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDP 278 (310)
Q Consensus 230 GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~ 278 (310)
|||++++|+.+++++|||+|++||+|++++||..+++.|..+++.++..
T Consensus 182 gGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~aGr~a 230 (248)
T cd04728 182 AGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAGRLA 230 (248)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876543
No 47
>PRK00208 thiG thiazole synthase; Reviewed
Probab=99.56 E-value=1.3e-13 Score=122.42 Aligned_cols=171 Identities=26% Similarity=0.359 Sum_probs=131.0
Q ss_pred HHHHHHHHcCCCEEEeC----CC-CCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHh-----CCCEEE--EcCC--C
Q 021609 105 VEAQILEAIGIDYVDES----EV-LTPADEENHINKHNFR-IPFVCGCRNLGEALRRIRE-----GAAMIR--TKGE--A 169 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~----~~-~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~-----Gad~V~--v~g~--~ 169 (310)
...+.+.++|++.|..+ +. -....+.+.+...++. ++++.+|+|.+||.+.+++ |-++|+ |.+. .
T Consensus 25 ~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~ 104 (250)
T PRK00208 25 VMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLLPPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKT 104 (250)
T ss_pred HHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCC
Confidence 33456677888888411 11 1335677777655555 8999999999999987653 667877 3443 2
Q ss_pred CCcchHHHHHHHHhhccc-eEeecccChhHHHHhh------hccC------------CcHHHHHHHhhcCCCCEEEeCCC
Q 021609 170 GTGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTFA------KKIA------------APYDLVMQTKQLGRLPVVHFAAG 230 (310)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~~------~~~~------------~~~~~i~~i~~~~~iPVi~iA~G 230 (310)
..+++.++++..+++... +.++|++.+|....-. .-.. ...+.++.+++..++||+ +.|
T Consensus 105 llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVI--vea 182 (250)
T PRK00208 105 LLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVI--VDA 182 (250)
T ss_pred CCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEE--EeC
Confidence 266788999999998777 9999999888775210 0011 136778888887789998 789
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 231 GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
||++++|+.+++++|||+|+|||+|++++||..+++.|..+++.++.
T Consensus 183 GI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~aGr~ 229 (250)
T PRK00208 183 GIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGRL 229 (250)
T ss_pred CCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987654
No 48
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.55 E-value=6.2e-13 Score=121.02 Aligned_cols=200 Identities=18% Similarity=0.216 Sum_probs=124.7
Q ss_pred CCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 42 VVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 42 ~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
..+| +.|+.+.+.|++++ +++++.. .....+.+.++++++.+++|+++...+...++++.+..+|++.|
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~--------~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~v 100 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASS--------EGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKV 100 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCccc--------ccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 3466 89999999999998 4553221 11234588999999999999999888878899999999999999
Q ss_pred E-eCCCCCchhHHHHHHh-cCCC-CcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhcc---ceEeec
Q 021609 119 D-ESEVLTPADEENHINK-HNFR-IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMG---DIRVLR 192 (310)
Q Consensus 119 i-~~~~~~~~~~~~~i~~-~~~~-i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~---~~~~l~ 192 (310)
+ ++..+..+++.+.+.. ++.+ +.+.+++...+.- ..+...|.+.+|..... .+..++++.+.. ..-.++
T Consensus 101 ivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~----~~~~~~v~i~gw~~~~~-~~~~~~~~~l~~~G~~~iivt 175 (254)
T TIGR00735 101 SINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVN----SYCWYEVYIYGGRESTG-LDAVEWAKEVEKLGAGEILLT 175 (254)
T ss_pred EEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCC----CCccEEEEEeCCcccCC-CCHHHHHHHHHHcCCCEEEEe
Confidence 6 5555554444444433 4323 5555554311000 00001233333321000 011122222111 111222
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDP 261 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp 261 (310)
..++++. ..++++++++++++..++||+ ++|||++++|+.+++..| +|+|++|++++...-+
T Consensus 176 ~i~~~g~-----~~g~~~~~~~~i~~~~~ipvi--a~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~ 238 (254)
T TIGR00735 176 SMDKDGT-----KSGYDLELTKAVSEAVKIPVI--ASGGAGKPEHFYEAFTKGKADAALAASVFHYREIT 238 (254)
T ss_pred CcCcccC-----CCCCCHHHHHHHHHhCCCCEE--EeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCC
Confidence 2222221 235668899999988899998 789999999999999887 9999999999974443
No 49
>PLN02591 tryptophan synthase
Probab=99.55 E-value=1.1e-13 Score=125.08 Aligned_cols=182 Identities=18% Similarity=0.245 Sum_probs=125.3
Q ss_pred CHHHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHHhhcCcceeeccccC------cH
Q 021609 44 TPEQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIKQSVTIPVMAKARIG------HF 104 (310)
Q Consensus 44 ~~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~------~~ 104 (310)
+.+.++.+.++|+|.+ +|. |. |..+++. .|.+....++.++++|+..++|+++....+ ..
T Consensus 18 ~~~~~~~l~~~Gad~i-ElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~ 96 (250)
T PLN02591 18 TAEALRLLDACGADVI-ELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGID 96 (250)
T ss_pred HHHHHHHHHHCCCCEE-EECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHH
Confidence 3467889999999976 664 21 2222222 255444567888888877899988765443 34
Q ss_pred HHHHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCCHHH-HHHHHHhCCCEEEEcCCCC-CcchHHHHHH
Q 021609 105 VEAQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRNLGE-ALRRIREGAAMIRTKGEAG-TGNIIEAVRH 180 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~e-a~~~~~~Gad~V~v~g~~~-~~~~~~~~~~ 180 (310)
.+.+.+.++|+|+++.++.. +..++.+.+++++...+.+++.+|.++ .++..+....+|.+-+..+ ||. .
T Consensus 97 ~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~-~----- 170 (250)
T PLN02591 97 KFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGA-R----- 170 (250)
T ss_pred HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCC-C-----
Confidence 67899999999999988742 233555666667777777777666544 4555566556665433322 221 0
Q ss_pred HHhhccceEeecccChhHHHHhhhccCC-cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAA-PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~~-~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
..... ..+.++.+++..++|++ .+.||++++|+.++++.|||||+|||+|++
T Consensus 171 -----------------------~~~~~~~~~~i~~vk~~~~~Pv~--vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 171 -----------------------ASVSGRVESLLQELKEVTDKPVA--VGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred -----------------------cCCchhHHHHHHHHHhcCCCceE--EeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 01111 24568888888899998 589999999999999999999999999987
No 50
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=99.54 E-value=3.6e-14 Score=124.55 Aligned_cols=170 Identities=27% Similarity=0.386 Sum_probs=118.4
Q ss_pred HHHHHHHcCCCEEEeC----CC---CCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHh-----CCCEEEE--cCCCC
Q 021609 106 EAQILEAIGIDYVDES----EV---LTPADEENHINKHNFR-IPFVCGCRNLGEALRRIRE-----GAAMIRT--KGEAG 170 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~----~~---~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~-----Gad~V~v--~g~~~ 170 (310)
..+.+.++|++.|..+ +. .....+.+.+...++. ++++.+|+|.+||.+.+++ |-++|++ ++...
T Consensus 24 m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~ 103 (247)
T PF05690_consen 24 MREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDK 103 (247)
T ss_dssp HHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TT
T ss_pred HHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 3456677888888421 11 1234555666544555 7889999999999987653 7788884 45433
Q ss_pred --CcchHHHHHHHHhhccc-eEeecccChhHHHHh------h-------------hccCCcHHHHHHHhhcCCCCEEEeC
Q 021609 171 --TGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTF------A-------------KKIAAPYDLVMQTKQLGRLPVVHFA 228 (310)
Q Consensus 171 --~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~------~-------------~~~~~~~~~i~~i~~~~~iPVi~iA 228 (310)
.+++.+++++.+.+... |.++||+++|.++.. | ++.. +...++.+.+..++|||+
T Consensus 104 ~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~-n~~~l~~i~~~~~vPvIv-- 180 (247)
T PF05690_consen 104 TLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQ-NPYNLRIIIERADVPVIV-- 180 (247)
T ss_dssp T--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SS-THHHHHHHHHHGSSSBEE--
T ss_pred CcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCC-CHHHHHHHHHhcCCcEEE--
Confidence 57888999999999888 999999999998731 0 1122 245677777777999994
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCCh
Q 021609 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDP 278 (310)
Q Consensus 229 ~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~ 278 (310)
.+||.+++|+.+++++|||+|++.|+|.+++||..+++.|..+++.++..
T Consensus 181 DAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~AGR~a 230 (247)
T PF05690_consen 181 DAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEAGRLA 230 (247)
T ss_dssp ES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999876543
No 51
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.53 E-value=1.2e-12 Score=115.32 Aligned_cols=172 Identities=19% Similarity=0.215 Sum_probs=124.4
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc-cCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR-IGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~-~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++++.++|...+ ++ +... ....+.++++++.+..++.+.-. +-..++++.+.++|+++++.+..
T Consensus 26 ~~~~a~~~gGi~~i-Ev-------t~~~----~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~- 92 (206)
T PRK09140 26 AHVGALIEAGFRAI-EI-------PLNS----PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT- 92 (206)
T ss_pred HHHHHHHHCCCCEE-EE-------eCCC----ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC-
Confidence 57888899999976 55 2111 11256888888887655444322 12358899999999999974432
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..++.+... ..+++++++++|.+|+..+.+.|+||+++++..
T Consensus 93 -~~~v~~~~~--~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~----------------------------------- 134 (206)
T PRK09140 93 -DPEVIRRAV--ALGMVVMPGVATPTEAFAALRAGAQALKLFPAS----------------------------------- 134 (206)
T ss_pred -CHHHHHHHH--HCCCcEEcccCCHHHHHHHHHcCCCEEEECCCC-----------------------------------
Confidence 234444433 357889999999999999999999999985421
Q ss_pred ccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC----CCHHHHHHHHHHHHh
Q 021609 205 KIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS----GDPVKRAQAIVRAVT 273 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a----~dp~~~a~~l~~~i~ 273 (310)
....+.++.+++.. ++|++ +.||| +++++.+++++|++++.++|+|+++ +++...++++++.++
T Consensus 135 --~~G~~~l~~l~~~~~~~ipvv--aiGGI-~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~i~~~a~~~~~~~~ 204 (206)
T PRK09140 135 --QLGPAGIKALRAVLPPDVPVF--AVGGV-TPENLAPYLAAGAAGFGLGSALYRPGQSAEEVAERARAFVAAYR 204 (206)
T ss_pred --CCCHHHHHHHHhhcCCCCeEE--EECCC-CHHHHHHHHHCCCeEEEEehHhcccccChHHHHHHHHHHHHHHh
Confidence 01244566666544 49998 56999 7999999999999999999999986 677777777766654
No 52
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=99.53 E-value=7.4e-13 Score=116.72 Aligned_cols=181 Identities=23% Similarity=0.280 Sum_probs=122.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHH---HHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKE---IKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~---i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~ 122 (310)
+.++.+.++|++++ +++ ....+ .....+.+++ ++..+++|+++. ++++.+.++|+|+|+.+.
T Consensus 25 ~~~~~~~~~gv~~v-~lr-------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~gad~vh~~~ 89 (212)
T PRK00043 25 EVVEAALEGGVTLV-QLR-------EKGLD-TRERLELARALKELCRRYGVPLIVN------DRVDLALAVGADGVHLGQ 89 (212)
T ss_pred HHHHHHHhcCCCEE-EEe-------CCCCC-HHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEecCc
Confidence 56778889999987 663 11000 0001223333 334567888764 356778899999996433
Q ss_pred -CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHH
Q 021609 123 -VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 123 -~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~ 201 (310)
........ . ..+.+..++++++|.+++.++.+.|+|+|.+++...+. +...
T Consensus 90 ~~~~~~~~~-~--~~~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~----------------------~~~~--- 141 (212)
T PRK00043 90 DDLPVADAR-A--LLGPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPTP----------------------TKKD--- 141 (212)
T ss_pred ccCCHHHHH-H--HcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCC----------------------CCCC---
Confidence 22222221 1 13466788899999999999999999999876432111 1000
Q ss_pred hhhccCCcHHHHHHHhhcCC-CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 202 FAKKIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 202 ~~~~~~~~~~~i~~i~~~~~-iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
......++.++++++..+ +||+ +.||| +++++.+++++|++++++||+|++++||...++++.+.++.
T Consensus 142 --~~~~~g~~~~~~~~~~~~~~~v~--a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~~ 210 (212)
T PRK00043 142 --AKAPQGLEGLREIRAAVGDIPIV--AIGGI-TPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRA 210 (212)
T ss_pred --CCCCCCHHHHHHHHHhcCCCCEE--EECCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHhh
Confidence 000112677777776655 9998 67999 69999999999999999999999999999888888776653
No 53
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=99.53 E-value=3.7e-13 Score=119.42 Aligned_cols=170 Identities=19% Similarity=0.295 Sum_probs=131.5
Q ss_pred HHHHHHHcCCCEEE----eCC-C--CCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHH----h-------CCCEEE--
Q 021609 106 EAQILEAIGIDYVD----ESE-V--LTPADEENHINKHNFR-IPFVCGCRNLGEALRRIR----E-------GAAMIR-- 164 (310)
Q Consensus 106 ~a~~~~~aGad~Vi----~~~-~--~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~----~-------Gad~V~-- 164 (310)
..+.+.++|++.|. ..+ . .....+.+.+...+.. ++++.+|+|.+||.+.++ + +-++|+
T Consensus 32 ~~~ai~aSg~evvTvalRR~~~~~~~~~~~~l~~i~~~~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLE 111 (267)
T CHL00162 32 AIQSIEASGCEIVTVAIRRLNNNLLNDNSNLLNGLDWNKLWLLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLE 111 (267)
T ss_pred HHHHHHHhCCcEEEEEEEEeccCcCCCcchHHHhhchhccEECCcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEE
Confidence 34566778888884 112 1 1235677777655555 899999999999988653 3 357877
Q ss_pred EcCC--CCCcchHHHHHHHHhhccc-eEeecccChhHHHHh------h-------------hccCCcHHHHHHHhhcCCC
Q 021609 165 TKGE--AGTGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTF------A-------------KKIAAPYDLVMQTKQLGRL 222 (310)
Q Consensus 165 v~g~--~~~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~------~-------------~~~~~~~~~i~~i~~~~~i 222 (310)
|.+. ...+++.+++++.+.+... |.++||+++|.++.. | ++. .....++.+.+..++
T Consensus 112 Vi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl-~n~~~l~~i~e~~~v 190 (267)
T CHL00162 112 VISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGL-QNLLNLQIIIENAKI 190 (267)
T ss_pred EeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCC-CCHHHHHHHHHcCCC
Confidence 4442 3477888999999999988 999999999998731 0 111 124567888887889
Q ss_pred CEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCCh
Q 021609 223 PVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDP 278 (310)
Q Consensus 223 PVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~ 278 (310)
||+ ..+||++++|+.+++++|||||++.|+|++++||..+++.|..+++.++..
T Consensus 191 pVi--vdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AGR~A 244 (267)
T CHL00162 191 PVI--IDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAGRLA 244 (267)
T ss_pred cEE--EeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHHHHH
Confidence 999 469999999999999999999999999999999999999999999876543
No 54
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.52 E-value=1.8e-12 Score=116.26 Aligned_cols=174 Identities=18% Similarity=0.248 Sum_probs=122.9
Q ss_pred CCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 42 VVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 42 ~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
..+| ++|+.+.+.|++++ .+|+. .+.....+.+.++++++.+++|+++...+...++++.+.+.|++.|
T Consensus 29 ~~dp~~~a~~~~~~g~~~i~i~dl~~--------~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~v 100 (232)
T TIGR03572 29 IGDPVNAARIYNAKGADELIVLDIDA--------SKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKV 100 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCC--------cccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 3466 78999999999988 34531 1111235688999999999999999887777788888999999999
Q ss_pred E-eCCCCCchhHHHHHHh-cCCC-CcEEEecCC----------------------HHHHHHHHHhCCCEEEEcCCCCCcc
Q 021609 119 D-ESEVLTPADEENHINK-HNFR-IPFVCGCRN----------------------LGEALRRIREGAAMIRTKGEAGTGN 173 (310)
Q Consensus 119 i-~~~~~~~~~~~~~i~~-~~~~-i~~~v~~~t----------------------~~ea~~~~~~Gad~V~v~g~~~~~~ 173 (310)
+ .+..++..++.+.+.+ ++.. +.+.+++.. .+.++++.+.|++.+.+++....+.
T Consensus 101 ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~ 180 (232)
T TIGR03572 101 SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGT 180 (232)
T ss_pred EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 6 5555555555444433 3322 444444322 2444556667777777765321110
Q ss_pred hHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHH-HHHcCCCEEEEc
Q 021609 174 IIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM-MMQLGCDGVFVG 252 (310)
Q Consensus 174 ~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~-~l~~GadgV~VG 252 (310)
..++++++++++++..++||+ ++|||++++|+.+ +...|||+|++|
T Consensus 181 -------------------------------~~g~~~~~~~~i~~~~~ipvi--a~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 181 -------------------------------MKGYDLELIKTVSDAVSIPVI--ALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred -------------------------------cCCCCHHHHHHHHhhCCCCEE--EECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 134568899999988899998 7899999999999 668999999999
Q ss_pred cccc
Q 021609 253 SGVF 256 (310)
Q Consensus 253 sai~ 256 (310)
++|-
T Consensus 228 ~a~h 231 (232)
T TIGR03572 228 SLFH 231 (232)
T ss_pred hhhh
Confidence 9873
No 55
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.52 E-value=8e-13 Score=131.28 Aligned_cols=216 Identities=16% Similarity=0.190 Sum_probs=146.5
Q ss_pred cccccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcH---------
Q 021609 37 GVIMDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHF--------- 104 (310)
Q Consensus 37 g~i~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~--------- 104 (310)
..+.++.+| ++|+.|.+.|||+| ++|+... . +-.....+.+.++++.+.+.+|+.+...+...
T Consensus 261 ~~~~~~gdPve~a~~y~~~Gadel~~~Di~~~~----~-~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~ 335 (538)
T PLN02617 261 REVRNLGKPVELAGQYYKDGADEVAFLNITGFR----D-FPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYS 335 (538)
T ss_pred cCCCcCCCHHHHHHHHHHcCCCEEEEEECCCCc----C-CcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccc
Confidence 346677788 89999999999998 4553110 0 00001233789999999999999998777653
Q ss_pred --HHHHHHHHcCCCEEE-eCCCCCc------------hhHHHHHHh-cCCC-CcEEEecCCHH--H-------HHHHHH-
Q 021609 105 --VEAQILEAIGIDYVD-ESEVLTP------------ADEENHINK-HNFR-IPFVCGCRNLG--E-------ALRRIR- 157 (310)
Q Consensus 105 --~~a~~~~~aGad~Vi-~~~~~~~------------~~~~~~i~~-~~~~-i~~~v~~~t~~--e-------a~~~~~- 157 (310)
++++.++.+|||.|+ .+.++.. +++++.+.+ ++.. +.+.+|++... + -.++..
T Consensus 336 ~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~ 415 (538)
T PLN02617 336 SLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNP 415 (538)
T ss_pred hHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCcccccccccccccc
Confidence 678999999999995 5544432 355555444 5444 55555654220 0 000000
Q ss_pred --hCC----CEEEEcCCCC-CcchHHHHHHHHhhccc---eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEe
Q 021609 158 --EGA----AMIRTKGEAG-TGNIIEAVRHVRSVMGD---IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHF 227 (310)
Q Consensus 158 --~Ga----d~V~v~g~~~-~~~~~~~~~~~r~~~~~---~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~i 227 (310)
.|- ..+.++||.. ++ .++.++++++... .-++++++.|++ ..++++++++.+++.+++|||
T Consensus 416 ~~~~~~~~~~~v~~~gg~~~~~--~~~~~~~~~~~~~Gageil~t~id~DGt-----~~G~d~~l~~~v~~~~~ipvi-- 486 (538)
T PLN02617 416 GPNGEEYAWYQCTVKGGREGRP--IGAYELAKAVEELGAGEILLNCIDCDGQ-----GKGFDIELVKLVSDAVTIPVI-- 486 (538)
T ss_pred CcCcccceEEEEEEecCcccCC--CCHHHHHHHHHhcCCCEEEEeecccccc-----ccCcCHHHHHHHHhhCCCCEE--
Confidence 111 2377888753 33 3466666665444 667777887775 257789999999998999998
Q ss_pred CCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHH
Q 021609 228 AAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 228 A~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~~a~ 266 (310)
|+||+.+++|+.+++. .|+|+++.++.|...+.+....+
T Consensus 487 asGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k 526 (538)
T PLN02617 487 ASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVK 526 (538)
T ss_pred EECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHH
Confidence 8999999999999996 67999999999988665544333
No 56
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.51 E-value=1.7e-12 Score=116.27 Aligned_cols=202 Identities=17% Similarity=0.232 Sum_probs=134.8
Q ss_pred eecchhhhhhCcccccCC---CH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecc
Q 021609 26 VKVGLAQMLRGGVIMDVV---TP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKA 99 (310)
Q Consensus 26 ~~~~~~~~~~~g~i~~~~---~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~ 99 (310)
++.|.++++.+|...... +| ++|+.|.+. ++++ ++++.. ..| ...+.+.++++.+.+++|+++..
T Consensus 10 ~~~G~vVr~~~G~~~~~~~~~dp~~~a~~~~~~-~~~l~ivDldga------~~g--~~~n~~~i~~i~~~~~~pv~~gG 80 (228)
T PRK04128 10 LMNGKAVRLYKGRKEEVKVYGDPVEIALRFSEY-VDKIHVVDLDGA------FEG--KPKNLDVVKNIIRETGLKVQVGG 80 (228)
T ss_pred eECCEEEEEEeccccCceECCCHHHHHHHHHHh-CCEEEEEECcch------hcC--CcchHHHHHHHHhhCCCCEEEcC
Confidence 345555555566533322 66 788999887 9987 455311 111 12458899999988999999998
Q ss_pred ccCcHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCC-Cc-chHH
Q 021609 100 RIGHFVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAG-TG-NIIE 176 (310)
Q Consensus 100 ~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~-~~-~~~~ 176 (310)
.+...++++.+.+.|++.++ ++...++.-+.+..++++ ++.+.+|.+.. .+.+.||.. ++ .+.+
T Consensus 81 GIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g-~ivvslD~~~g------------~v~~~gw~~~~~~~~~~ 147 (228)
T PRK04128 81 GLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFE-GITVSLDVKGG------------RIAVKGWLEESSIKVED 147 (228)
T ss_pred CCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcC-CEEEEEEccCC------------eEecCCCeEcCCCCHHH
Confidence 88888999999999999986 666664444444444443 35555555332 455667632 22 3345
Q ss_pred HHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 177 ~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
..++..+. ...-+++++++|+++ .+++ ++.+. ..++||+ ++|||++.+|+.++...|++||++|++|+
T Consensus 148 ~~~~~~~~-~~~ii~t~i~~dGt~-----~G~d-~l~~~---~~~~pvi--asGGv~~~~Dl~~l~~~g~~gvivg~al~ 215 (228)
T PRK04128 148 AYEMLKNY-VNRFIYTSIERDGTL-----TGIE-EIERF---WGDEEFI--YAGGVSSAEDVKKLAEIGFSGVIIGKALY 215 (228)
T ss_pred HHHHHHHH-hCEEEEEeccchhcc-----cCHH-HHHHh---cCCCCEE--EECCCCCHHHHHHHHHCCCCEEEEEhhhh
Confidence 55666555 334577777777653 2333 33222 2478998 89999999999999999999999999999
Q ss_pred cCCCH
Q 021609 257 KSGDP 261 (310)
Q Consensus 257 ~a~dp 261 (310)
...-+
T Consensus 216 ~g~~~ 220 (228)
T PRK04128 216 EGRIS 220 (228)
T ss_pred cCCcC
Confidence 75433
No 57
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.51 E-value=1.4e-13 Score=129.25 Aligned_cols=152 Identities=25% Similarity=0.324 Sum_probs=110.4
Q ss_pred HHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----HhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 47 QARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.|+.+.+.|+++| +|| |+++..+...|+.++++++.+.++ ++++++|+.+|.+.++...
T Consensus 82 aa~~~~~~g~d~I-dlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~------------- 147 (321)
T PRK10415 82 AARINVESGAQII-DINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPE------------- 147 (321)
T ss_pred HHHHHHHCCCCEE-EEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCC-------------
Confidence 4666677899986 998 666666777799999988877765 5557899999998774210
Q ss_pred eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHH
Q 021609 120 ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 120 ~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~ 199 (310)
..+. .+-+..+.+.|++.+.+|++...+.
T Consensus 148 ------~~~~-------------------~~~a~~le~~G~d~i~vh~rt~~~~-------------------------- 176 (321)
T PRK10415 148 ------HRNC-------------------VEIAQLAEDCGIQALTIHGRTRACL-------------------------- 176 (321)
T ss_pred ------cchH-------------------HHHHHHHHHhCCCEEEEecCccccc--------------------------
Confidence 0011 1224456678999999998642110
Q ss_pred HHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 200 FTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 200 ~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.....+++.++++++.+++||+ ++|||.|++|+.++++ .|||+|++|++++. ||+... ++.+.+
T Consensus 177 ----~~G~a~~~~i~~ik~~~~iPVI--~nGgI~s~~da~~~l~~~gadgVmiGR~~l~--nP~if~-~~~~~~ 241 (321)
T PRK10415 177 ----FNGEAEYDSIRAVKQKVSIPVI--ANGDITDPLKARAVLDYTGADALMIGRAAQG--RPWIFR-EIQHYL 241 (321)
T ss_pred ----cCCCcChHHHHHHHHhcCCcEE--EeCCCCCHHHHHHHHhccCCCEEEEChHhhc--CChHHH-HHHHHH
Confidence 0123568899999988899998 7999999999999996 79999999999997 787433 244433
No 58
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.51 E-value=8.8e-13 Score=124.00 Aligned_cols=200 Identities=18% Similarity=0.193 Sum_probs=129.0
Q ss_pred eccCc-ceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 19 TKKSP-FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 19 ~~~~~-~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
++... ++++.|++. +.+.+++++++|.++.++|.-+++..+-.+ ....+.+++++....+...+
T Consensus 25 t~l~~~~~l~~Piv~----apM~~vt~~~ma~ava~~GglGvi~~~~~~-----------~~~~~~i~~vk~~l~v~~~~ 89 (325)
T cd00381 25 TKLTKNITLNIPLVS----APMDTVTESEMAIAMARLGGIGVIHRNMSI-----------EEQAEEVRKVKGRLLVGAAV 89 (325)
T ss_pred EEecCccccCCCEEe----cCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-----------HHHHHHHHHhccCceEEEec
Confidence 34433 888999988 778889999999999999988774432000 00123444444322222221
Q ss_pred ccccCcHHHHHHHHHcCCCEEEe--CCCC--CchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCc
Q 021609 98 KARIGHFVEAQILEAIGIDYVDE--SEVL--TPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTG 172 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi~--~~~~--~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~ 172 (310)
.......+.++.+.++|+|.+.. +..- ...+.++.+++..+++++++ .+.|.++++.+.++|+|+|.++...++.
T Consensus 90 ~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~ 169 (325)
T cd00381 90 GTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSI 169 (325)
T ss_pred CCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcC
Confidence 11112346788899999999852 2222 23455666655445577776 5889999999999999999986432211
Q ss_pred chHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 173 NIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 173 ~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
. .. +.... ...+.+..+..+.+. .++||+ ++|||.++.|+.+++.+|||+|
T Consensus 170 ~--~t-----------~~~~g-----------~g~p~~~~i~~v~~~~~~~~vpVI--A~GGI~~~~di~kAla~GA~~V 223 (325)
T cd00381 170 C--TT-----------RIVTG-----------VGVPQATAVADVAAAARDYGVPVI--ADGGIRTSGDIVKALAAGADAV 223 (325)
T ss_pred c--cc-----------ceeCC-----------CCCCHHHHHHHHHHHHhhcCCcEE--ecCCCCCHHHHHHHHHcCCCEE
Confidence 1 00 01000 012334445544433 369998 8999999999999999999999
Q ss_pred EEccccccCC
Q 021609 250 FVGSGVFKSG 259 (310)
Q Consensus 250 ~VGsai~~a~ 259 (310)
++||.|..++
T Consensus 224 miGt~fa~t~ 233 (325)
T cd00381 224 MLGSLLAGTD 233 (325)
T ss_pred Eecchhcccc
Confidence 9999999854
No 59
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.50 E-value=4.1e-13 Score=122.37 Aligned_cols=182 Identities=12% Similarity=0.155 Sum_probs=124.3
Q ss_pred HHHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHHhhcCcceeeccccC------cHH
Q 021609 45 PEQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIKQSVTIPVMAKARIG------HFV 105 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~------~~~ 105 (310)
.+.++.+.++|||.+ +|. |. |..+++. +|.+....++.++++|+..++|+++....+ ...
T Consensus 32 ~~~~~~l~~~Gad~i-ElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~ 110 (263)
T CHL00200 32 KKALKILDKKGADII-ELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINK 110 (263)
T ss_pred HHHHHHHHHCCCCEE-EECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHH
Confidence 367889999999976 664 21 2222222 345444557888888877899987765443 346
Q ss_pred HHHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCCHHHHHH-HHHhCCCEEEEcCC-CCCcchHHHHHHH
Q 021609 106 EAQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRNLGEALR-RIREGAAMIRTKGE-AGTGNIIEAVRHV 181 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~-~~~~Gad~V~v~g~-~~~~~~~~~~~~~ 181 (310)
+++.+.++|+|+++.++.. +..++.+.+++++.....++..+|.++..+ ..+..-.+|.+-.. +.||. .
T Consensus 111 F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~-~------ 183 (263)
T CHL00200 111 FIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGL-K------ 183 (263)
T ss_pred HHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCC-C------
Confidence 7899999999999887742 344556677777777777888777655554 44443346554222 22331 0
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
... ...-.+.++.+++.+++|+. ..+||++++++.++...|||||+|||+|++
T Consensus 184 ----------~~~-----------~~~~~~~i~~ir~~t~~Pi~--vGFGI~~~e~~~~~~~~GADGvVVGSalv~ 236 (263)
T CHL00200 184 ----------TEL-----------DKKLKKLIETIKKMTNKPII--LGFGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred ----------ccc-----------cHHHHHHHHHHHHhcCCCEE--EECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 000 01124567778888899998 589999999999999999999999999964
No 60
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.50 E-value=1.4e-12 Score=124.77 Aligned_cols=196 Identities=14% Similarity=0.184 Sum_probs=128.3
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh-----------
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS----------- 90 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~----------- 90 (310)
..|++..|+++ +.+.+++++++|.++.++|.-+++..+-.+.++ .+.++++++.
T Consensus 37 ~~l~l~iPIvs----ApMd~Vt~~~lA~AvA~aGGlGvI~~~~~~e~l-----------~~eI~~vk~~~~~~~i~~~~d 101 (404)
T PRK06843 37 KNISLNIPFLS----SAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQ-----------RKEIEKVKTYKFQKTINTNGD 101 (404)
T ss_pred hccCCCCCEec----CCCCCCCCHHHHHHHHHCCCEEEecCCCCHHHH-----------HHHHHHHHhhcCCCceeeccc
Confidence 57888999998 667889999999999999988875543111111 1122222211
Q ss_pred ---------------------------cCcce---------ee--ccccC--cHHHHHHHHHcCCCEEE--eCCC--CCc
Q 021609 91 ---------------------------VTIPV---------MA--KARIG--HFVEAQILEAIGIDYVD--ESEV--LTP 126 (310)
Q Consensus 91 ---------------------------~~iPv---------~v--k~~~~--~~~~a~~~~~aGad~Vi--~~~~--~~~ 126 (310)
-..|- .+ -.... ..+.++.+.++|+|.|. .++. ...
T Consensus 102 ~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~ 181 (404)
T PRK06843 102 TNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRI 181 (404)
T ss_pred ccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhH
Confidence 11121 11 11111 23678999999999995 4443 345
Q ss_pred hhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 127 ADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 127 ~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
.+..+.++++.+++.+++ .+.|.++++.+.++|+|+|.+. .+. +.+++. +.+...
T Consensus 182 ~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG-~g~-Gs~c~t-----------r~~~g~----------- 237 (404)
T PRK06843 182 IELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVG-IGP-GSICTT-----------RIVAGV----------- 237 (404)
T ss_pred HHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEEC-CCC-CcCCcc-----------eeecCC-----------
Confidence 566777766556776655 7999999999999999999873 221 111110 111111
Q ss_pred cCCcHHHH---HHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLV---MQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i---~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
..+.+..+ .++.+..++||| |.|||+++.|+.+++.+||++|++|++|..+
T Consensus 238 g~p~ltai~~v~~~~~~~~vpVI--AdGGI~~~~Di~KALalGA~aVmvGs~~agt 291 (404)
T PRK06843 238 GVPQITAICDVYEVCKNTNICII--ADGGIRFSGDVVKAIAAGADSVMIGNLFAGT 291 (404)
T ss_pred CCChHHHHHHHHHHHhhcCCeEE--EeCCCCCHHHHHHHHHcCCCEEEEcceeeee
Confidence 01223333 444444579998 8999999999999999999999999999984
No 61
>PLN02334 ribulose-phosphate 3-epimerase
Probab=99.49 E-value=3.5e-12 Score=114.31 Aligned_cols=191 Identities=15% Similarity=0.156 Sum_probs=121.6
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE--eC-
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD--ES- 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi--~~- 121 (310)
+.++.+.++|++++ +++-.. ..+. .+..-.++.++.+++.++.|+.+...+. ..+.++.+.++|||+|+ ..
T Consensus 24 ~~l~~~~~~g~~~i-hld~~d---~~f~-~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q 98 (229)
T PLN02334 24 EEAKRVLDAGADWL-HVDVMD---GHFV-PNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQ 98 (229)
T ss_pred HHHHHHHHcCCCEE-EEeccc---CCcC-CccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeecc
Confidence 57888899999987 774110 0000 0011114788888887777766655542 24667888999999994 22
Q ss_pred -CCCCchhHHHHHHhcCCCCcEEEecC--CHHHHHHHH-HhC-CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 122 -EVLTPADEENHINKHNFRIPFVCGCR--NLGEALRRI-REG-AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 122 -~~~~~~~~~~~i~~~~~~i~~~v~~~--t~~ea~~~~-~~G-ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
..-.+....+.++ +.++.++++++ |..+..+.. +.| +|++.+.+- .++.+.
T Consensus 99 ~~~d~~~~~~~~i~--~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v----------------------~pg~~~ 154 (229)
T PLN02334 99 ASTIHLHRLIQQIK--SAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSV----------------------EPGFGG 154 (229)
T ss_pred ccchhHHHHHHHHH--HCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEE----------------------ecCCCc
Confidence 1112333333333 35667777775 555555544 443 999865421 111111
Q ss_pred hHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
. +......+.++++++. .++|+. +.||| +++++.++.++|+|++++||+|++++||...+++|++.+++
T Consensus 155 ~------~~~~~~~~~i~~~~~~~~~~~I~--a~GGI-~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~~~ 224 (229)
T PLN02334 155 Q------SFIPSMMDKVRALRKKYPELDIE--VDGGV-GPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVEK 224 (229)
T ss_pred c------ccCHHHHHHHHHHHHhCCCCcEE--EeCCC-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHH
Confidence 0 0011124556666654 457888 56999 79999999999999999999999999999999988877654
No 62
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.49 E-value=7.3e-13 Score=120.52 Aligned_cols=180 Identities=23% Similarity=0.270 Sum_probs=120.4
Q ss_pred HHHHHHHHHcCCcEEEecc-----CC---cccccc-----cCCCCCCCCHHHHHHHHhh-cCcceeeccccCc------H
Q 021609 45 PEQARVAEEAGACAVMALE-----RV---PADIRS-----QGGVARMSDPQLIKEIKQS-VTIPVMAKARIGH------F 104 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~-----~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~~------~ 104 (310)
.+.++++.++|||.| +|. |. |..+++ .+|.+....++.++++++. +++|+......+. .
T Consensus 27 ~~~~~~l~~~Gad~i-ElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e 105 (256)
T TIGR00262 27 LEIIKTLIEAGADAL-ELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVE 105 (256)
T ss_pred HHHHHHHHHcCCCEE-EECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHH
Confidence 367889999999987 664 21 222222 1355555567888999876 7999876544432 5
Q ss_pred HHHHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCC-HHHHHHHHHh--CCCEEE-EcCCCCCcchHHHH
Q 021609 105 VEAQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRN-LGEALRRIRE--GAAMIR-TKGEAGTGNIIEAV 178 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t-~~ea~~~~~~--Gad~V~-v~g~~~~~~~~~~~ 178 (310)
.+++.+.++|+|+++.++.. +..++.+.+++++.....++..+| .+.+....+. |.-|+. +.| .||.-
T Consensus 106 ~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G--~TG~~---- 179 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAG--VTGAR---- 179 (256)
T ss_pred HHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCC--CCCCc----
Confidence 66899999999999877642 234556666666666555566555 4444444444 343432 232 23310
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.. -.....+.++++++..+.|++ ..|||+|++++.++.+.|||+|+|||+|++
T Consensus 180 -------------~~-----------~~~~~~~~i~~lr~~~~~pi~--vgfGI~~~e~~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 180 -------------NR-----------AASALNELVKRLKAYSAKPVL--VGFGISKPEQVKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred -------------cc-----------CChhHHHHHHHHHhhcCCCEE--EeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 00 012236778888887788988 689999999999999999999999999996
No 63
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=99.48 E-value=1.2e-12 Score=114.17 Aligned_cols=175 Identities=22% Similarity=0.291 Sum_probs=117.9
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEe-CC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE-SE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~-~~ 122 (310)
+....+.+.|++++ +|. .+.-+. .......+..+++..+.|+++++ +++.+.+.|+|+|.. ..
T Consensus 17 ~~~~~~~~~g~~~v-~lR-------~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~------~~~la~~~g~~GvHl~~~ 82 (196)
T TIGR00693 17 NRVEAALKGGVTLV-QLR-------DKGSNTRERLALAEKLQELCRRYGVPFIVND------RVDLALALGADGVHLGQD 82 (196)
T ss_pred HHHHHHHhcCCCEE-EEe-------cCCCCHHHHHHHHHHHHHHHHHhCCeEEEEC------HHHHHHHcCCCEEecCcc
Confidence 55667888999876 763 221010 01112334444556688988755 356788999999964 33
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHh
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~ 202 (310)
.+......+. .+.+..+.+++|+.+++.++.+.|+||+.+.... ++.++.+
T Consensus 83 ~~~~~~~r~~---~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~----------------------~t~~k~~---- 133 (196)
T TIGR00693 83 DLPASEARAL---LGPDKIIGVSTHNLEELAEAEAEGADYIGFGPIF----------------------PTPTKKD---- 133 (196)
T ss_pred cCCHHHHHHh---cCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCcc----------------------CCCCCCC----
Confidence 3443333333 2356789999999999999999999999875321 1111100
Q ss_pred hhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 021609 203 AKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQA 267 (310)
Q Consensus 203 ~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~ 267 (310)
......++.++++.+. .++||+ +.||| +++++.+++++|+++|++|++|++++||...+++
T Consensus 134 -~~~~~g~~~l~~~~~~~~~~pv~--a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~ 195 (196)
T TIGR00693 134 -PAPPAGVELLREIAATSIDIPIV--AIGGI-TLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQ 195 (196)
T ss_pred -CCCCCCHHHHHHHHHhcCCCCEE--EECCc-CHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHh
Confidence 0011236677777654 358998 66999 6999999999999999999999999999877664
No 64
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=99.48 E-value=2.2e-12 Score=114.96 Aligned_cols=195 Identities=18% Similarity=0.247 Sum_probs=127.7
Q ss_pred eeecchhhhhhCccccc----------CCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhc
Q 021609 25 SVKVGLAQMLRGGVIMD----------VVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSV 91 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~~----------~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~ 91 (310)
-++.|.++++.+|.... ..+| ++|+.|.+.|++++ +||+.. .+ ...+.+.++++.+.
T Consensus 8 Dl~~g~~Vr~~~G~~~~~~~~~~~~~~~~dP~~~a~~~~~~g~~~l~ivDLd~~------~~---~~~n~~~i~~i~~~- 77 (221)
T TIGR00734 8 DLKDGIAVAGKSGERESYPPLESVSRLSSSPDDAAKVIEEIGARFIYIADLDRI------VG---LGDNFSLLSKLSKR- 77 (221)
T ss_pred EeeCCEEEEccccCcccccccccceecCCCHHHHHHHHHHcCCCEEEEEEcccc------cC---CcchHHHHHHHHhh-
Confidence 34566677776665333 4576 78999999999998 577521 11 23458899999876
Q ss_pred CcceeeccccCcHHHHHHHHH--cCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCC
Q 021609 92 TIPVMAKARIGHFVEAQILEA--IGIDYVD-ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 92 ~iPv~vk~~~~~~~~a~~~~~--aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~ 168 (310)
+|+.+...+...++++.+.. .||+.|+ ++..++.+++.+.+. +.+.++.++. .+..++|
T Consensus 78 -~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~p~~l~~~~-----~vvslD~~~g------------~v~~~g~ 139 (221)
T TIGR00734 78 -VELIADCGVRSPEDLETLPFTLEFASRVVVATETLDITELLRECY-----TVVSLDFKEK------------FLDASGL 139 (221)
T ss_pred -CcEEEcCccCCHHHHHHHHhhhccceEEeecChhhCCHHHHHHhh-----hEEEEEeECC------------ccccccc
Confidence 49998887777777877754 3699995 777666555543321 2333343221 1112333
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
.. ...+..++....-. --++.+++.|++ ..++++++++++++..++|++ ++|||++++|+.++...|+|+
T Consensus 140 ~~--~~~~~~~~~~~~g~-~ii~tdI~~dGt-----~~G~d~eli~~i~~~~~~pvi--a~GGi~s~ed~~~l~~~Ga~~ 209 (221)
T TIGR00734 140 FE--SLEEVRDFLNSFDY-GLIVLDIHSVGT-----MKGPNLELLTKTLELSEHPVM--LGGGISGVEDLELLKEMGVSA 209 (221)
T ss_pred cc--cHHHHHHHHHhcCC-EEEEEECCcccc-----CCCCCHHHHHHHHhhCCCCEE--EeCCCCCHHHHHHHHHCCCCE
Confidence 21 11222232222111 234455565543 246779999999998899998 899999999999988999999
Q ss_pred EEEcccccc
Q 021609 249 VFVGSGVFK 257 (310)
Q Consensus 249 V~VGsai~~ 257 (310)
|++|++|+.
T Consensus 210 vivgsal~~ 218 (221)
T TIGR00734 210 VLVATAVHK 218 (221)
T ss_pred EEEhHHhhC
Confidence 999999985
No 65
>PRK07695 transcriptional regulator TenI; Provisional
Probab=99.48 E-value=3e-12 Score=112.49 Aligned_cols=175 Identities=15% Similarity=0.204 Sum_probs=119.3
Q ss_pred HHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHHHcCCCEEE-eCCCCCch
Q 021609 51 AEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILEAIGIDYVD-ESEVLTPA 127 (310)
Q Consensus 51 ~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~ 127 (310)
..++|++++ +| |....+. ......++++.+.. ..++++++ +.+.+...|+|+|. ........
T Consensus 23 ~~~~g~~~i-ql-------R~k~~~~-~~~~~~~~~l~~~~~~~~~liin~------~~~la~~~~~~gvHl~~~~~~~~ 87 (201)
T PRK07695 23 QIHSEVDYI-HI-------REREKSA-KELYEGVESLLKKGVPASKLIIND------RVDIALLLNIHRVQLGYRSFSVR 87 (201)
T ss_pred HHhCCCCEE-EE-------cCCCCCH-HHHHHHHHHHHHhCCCCCeEEEEC------HHHHHHHcCCCEEEeCcccCCHH
Confidence 678899976 77 3322110 01123344444321 22355444 35678889999996 33333333
Q ss_pred hHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccC
Q 021609 128 DEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA 207 (310)
Q Consensus 128 ~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~ 207 (310)
++++. .++..+++++++.+++.++.+.|+||+.++ +.+ ++.+..+ ...
T Consensus 88 ~~r~~----~~~~~ig~s~~s~e~a~~a~~~Gadyi~~g-~v~---------------------~t~~k~~------~~~ 135 (201)
T PRK07695 88 SVREK----FPYLHVGYSVHSLEEAIQAEKNGADYVVYG-HVF---------------------PTDCKKG------VPA 135 (201)
T ss_pred HHHHh----CCCCEEEEeCCCHHHHHHHHHcCCCEEEEC-CCC---------------------CCCCCCC------CCC
Confidence 33322 246778999999999999999999999753 221 1111100 012
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
..++.++++.+..++||+ +.||| +++++.+++++|+++|++||+|+.++||...++.+.+.+++|
T Consensus 136 ~g~~~l~~~~~~~~ipvi--a~GGI-~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~~~ 200 (201)
T PRK07695 136 RGLEELSDIARALSIPVI--AIGGI-TPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKKW 200 (201)
T ss_pred CCHHHHHHHHHhCCCCEE--EEcCC-CHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHhhc
Confidence 236777888777789999 67999 899999999999999999999999999999999999988776
No 66
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.48 E-value=6.5e-14 Score=130.88 Aligned_cols=146 Identities=29% Similarity=0.458 Sum_probs=98.9
Q ss_pred HHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----HhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 47 QARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.|+.+.+.|+++| +|| |+++..+...|+.++++++.+.++ ++++++||.+|.++++.+.
T Consensus 71 aa~~~~~~~~~~I-DlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~------------- 136 (309)
T PF01207_consen 71 AAEIVAELGFDGI-DLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDS------------- 136 (309)
T ss_dssp HHHHHCCTT-SEE-EEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT---------------
T ss_pred HHHhhhccCCcEE-eccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccc-------------
Confidence 4555566699987 998 888888887899999999876665 6678999999999885311
Q ss_pred eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHH
Q 021609 120 ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 120 ~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~ 199 (310)
..+.. +-++.+.+.|++.|.+|+++....
T Consensus 137 ------~~~~~-------------------~~~~~l~~~G~~~i~vH~Rt~~q~-------------------------- 165 (309)
T PF01207_consen 137 ------PEETI-------------------EFARILEDAGVSAITVHGRTRKQR-------------------------- 165 (309)
T ss_dssp ------CHHHH-------------------HHHHHHHHTT--EEEEECS-TTCC--------------------------
T ss_pred ------hhHHH-------------------HHHHHhhhcccceEEEecCchhhc--------------------------
Confidence 11121 235566788999999999853211
Q ss_pred HHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHH
Q 021609 200 FTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 200 ~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~~a 265 (310)
....++|+.++++++..++||+ ++|||.|++|+.++++ .|+||||+|++.+. ||+...
T Consensus 166 ----~~~~a~w~~i~~i~~~~~ipvi--~NGdI~s~~d~~~~~~~tg~dgvMigRgal~--nP~lf~ 224 (309)
T PF01207_consen 166 ----YKGPADWEAIAEIKEALPIPVI--ANGDIFSPEDAERMLEQTGADGVMIGRGALG--NPWLFR 224 (309)
T ss_dssp ----CTS---HHHHHHCHHC-TSEEE--EESS--SHHHHHHHCCCH-SSEEEESHHHCC---CCHHC
T ss_pred ----CCcccchHHHHHHhhcccceeE--EcCccCCHHHHHHHHHhcCCcEEEEchhhhh--cCHHhh
Confidence 0235679999999998899998 8999999999999985 59999999999997 777554
No 67
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.47 E-value=1e-12 Score=122.89 Aligned_cols=146 Identities=26% Similarity=0.378 Sum_probs=108.1
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----Hhhc--CcceeeccccCcHHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSV--TIPVMAKARIGHFVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~--~iPv~vk~~~~~~~~a~~~~~aGad 116 (310)
+.|+.+++.|+++| +|| |.++..+..+|+.++++++.+.++ ++++ ++||.+|.++++.+.
T Consensus 79 ~aA~~~~~~g~d~I-diN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~---------- 147 (312)
T PRK10550 79 ENAARAVELGSWGV-DLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSG---------- 147 (312)
T ss_pred HHHHHHHHcCCCEE-EEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCc----------
Confidence 45777888999986 888 666676766788888888766665 5556 499999999874110
Q ss_pred EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 117 YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
.+. .+-+..+.+.|+|++.+|+++....
T Consensus 148 ----------~~~-------------------~~~a~~l~~~Gvd~i~Vh~Rt~~~~----------------------- 175 (312)
T PRK10550 148 ----------ERK-------------------FEIADAVQQAGATELVVHGRTKEDG----------------------- 175 (312)
T ss_pred ----------hHH-------------------HHHHHHHHhcCCCEEEECCCCCccC-----------------------
Confidence 011 1224556678999999998753110
Q ss_pred hHHHHhhhccC-CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHH
Q 021609 197 DEVFTFAKKIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 197 d~~~~~~~~~~-~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~a 265 (310)
| ... ..++.++++++..++||+ ++|||.|++|+.+++ ..|||+|++|++++. ||+...
T Consensus 176 -----y--~g~~~~~~~i~~ik~~~~iPVi--~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~--nP~lf~ 235 (312)
T PRK10550 176 -----Y--RAEHINWQAIGEIRQRLTIPVI--ANGEIWDWQSAQQCMAITGCDAVMIGRGALN--IPNLSR 235 (312)
T ss_pred -----C--CCCcccHHHHHHHHhhcCCcEE--EeCCcCCHHHHHHHHhccCCCEEEEcHHhHh--CcHHHH
Confidence 0 112 257889999998899998 799999999999999 579999999999997 787443
No 68
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.47 E-value=4.1e-12 Score=113.94 Aligned_cols=186 Identities=21% Similarity=0.261 Sum_probs=129.1
Q ss_pred cchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc-----C
Q 021609 28 VGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI-----G 102 (310)
Q Consensus 28 ~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~-----~ 102 (310)
.|+++ +.+-.+++++.++.+.+.|+-+++.. +. .+.....+.++++++.++.|+.++... +
T Consensus 3 ~pi~~----a~m~g~~~~~~~~~~~~~G~ig~i~~-------~~---~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~ 68 (236)
T cd04730 3 YPIIQ----APMAGVSTPELAAAVSNAGGLGFIGA-------GY---LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPD 68 (236)
T ss_pred CCEEC----CCCCCCCCHHHHHHHHhCCCccccCC-------CC---CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcC
Confidence 45555 44666789999999999996554321 00 000111345666666555566665443 2
Q ss_pred cHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHH
Q 021609 103 HFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVR 182 (310)
Q Consensus 103 ~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r 182 (310)
..+.++.+.++|+|+|..... .+.++.+.+++ .++.++..+++.+++.++.+.|+|++.+++...+++..
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~-~~~~~~~~~~~--~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~------- 138 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFG-PPAEVVERLKA--AGIKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHRG------- 138 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCC-CCHHHHHHHHH--cCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCC-------
Confidence 345688999999999975554 45555555544 46778888889999999889999999887653222100
Q ss_pred hhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 021609 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~d 260 (310)
. .....+++++++++..++|++ +.|||++++|+.+++..|+|+|++||+++++.+
T Consensus 139 ------------~---------~~~~~~~~i~~i~~~~~~Pvi--~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e 193 (236)
T cd04730 139 ------------T---------FDIGTFALVPEVRDAVDIPVI--AAGGIADGRGIAAALALGADGVQMGTRFLATEE 193 (236)
T ss_pred ------------c---------cccCHHHHHHHHHHHhCCCEE--EECCCCCHHHHHHHHHcCCcEEEEchhhhcCcc
Confidence 0 002346778888877789998 679999999999999999999999999998654
No 69
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.47 E-value=8.6e-13 Score=124.29 Aligned_cols=199 Identities=24% Similarity=0.291 Sum_probs=145.7
Q ss_pred eeccCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 18 ETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
.+....|++++|++| |.+.+++++++|.+..++|.-+++..+..+. ....+.++++++.+..|...
T Consensus 5 ~~~~~~~~i~~PIiq----~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~----------e~l~~~i~~~~~~~~~p~~~ 70 (336)
T COG2070 5 TRFILLLGIKYPIIQ----GGMAGVSTPELAAAVSNAGGLGIIASGGLPA----------EQLRAEIRKIRALTDKPFVA 70 (336)
T ss_pred chhhcccCccCCeec----CCccccCcHHHHHHHhccCCccccccccCCH----------HHHHHHHHHHHHhcCCcchh
Confidence 344778999999999 4455599999999999999887643321110 11236777788777777322
Q ss_pred ccc----------------cCcHHHHHHHHHc-CCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCC
Q 021609 98 KAR----------------IGHFVEAQILEAI-GIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGA 160 (310)
Q Consensus 98 k~~----------------~~~~~~a~~~~~a-Gad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Ga 160 (310)
..+ -.+.+.++.+.+. |+-.+..+....+.+....++. .+..++..+.+..+++++.+.|+
T Consensus 71 ~~f~~~~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~--~g~~v~~~v~~~~~A~~~~~~G~ 148 (336)
T COG2070 71 NNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKA--AGIKVIHSVITVREALKAERAGA 148 (336)
T ss_pred cccccccccchhheecccccchHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHH--cCCeEEEEeCCHHHHHHHHhCCC
Confidence 111 1123444555554 8888876666667778777765 67889999999999999999999
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC-CCEEEeCCCCCCCHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAA 239 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~-iPVi~iA~GGI~t~~d~~ 239 (310)
|.|...|...+||.. ... .......+++++.+..+ +||+ |+|||.+.+++.
T Consensus 149 d~vI~~g~eAGGH~g------------------~~~--------~~~~t~~Lv~ev~~~~~~iPVi--AAGGI~dg~~i~ 200 (336)
T COG2070 149 DAVIAQGAEAGGHRG------------------GVD--------LEVSTFALVPEVVDAVDGIPVI--AAGGIADGRGIA 200 (336)
T ss_pred CEEEecCCcCCCcCC------------------CCC--------CCccHHHHHHHHHHHhcCCCEE--EecCccChHHHH
Confidence 999988875555511 000 01233678999998888 9999 899999999999
Q ss_pred HHHHcCCCEEEEccccccCCC
Q 021609 240 MMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 240 ~~l~~GadgV~VGsai~~a~d 260 (310)
.++.+||++|.+||+|+-+..
T Consensus 201 AAlalGA~gVq~GT~Fl~t~E 221 (336)
T COG2070 201 AALALGADGVQMGTRFLATKE 221 (336)
T ss_pred HHHHhccHHHHhhhhhhcccc
Confidence 999999999999999998654
No 70
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=99.46 E-value=1.2e-12 Score=118.07 Aligned_cols=181 Identities=24% Similarity=0.322 Sum_probs=127.1
Q ss_pred HHHHHHHHHcCCcEEEecc-----CC---cccccc----c-CCCCCCCCHHHHHHHHhh-cCcceeeccccC------cH
Q 021609 45 PEQARVAEEAGACAVMALE-----RV---PADIRS----Q-GGVARMSDPQLIKEIKQS-VTIPVMAKARIG------HF 104 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~----~-~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~------~~ 104 (310)
.+.++.+.++|||.| +|. |. |+.+++ . +|.+....++.++++++. .++|+++....+ ..
T Consensus 34 ~e~i~~L~~~GaD~i-ELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie 112 (265)
T COG0159 34 LEIIKTLVEAGADIL-ELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIE 112 (265)
T ss_pred HHHHHHHHhCCCCEE-EecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHH
Confidence 367888899999987 664 21 332222 2 266666778899999865 799999876554 24
Q ss_pred HHHHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCCHHHHHHHH-HhCCCEEEEcCCCC-CcchHHHHHH
Q 021609 105 VEAQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRNLGEALRRI-REGAAMIRTKGEAG-TGNIIEAVRH 180 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~-~~Gad~V~v~g~~~-~~~~~~~~~~ 180 (310)
.+++.+.++|+|+++.+|.. +..++...+++++...+.++..+|.++..+.. +..-.++..-+..+ ||.
T Consensus 113 ~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~------- 185 (265)
T COG0159 113 KFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGA------- 185 (265)
T ss_pred HHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCC-------
Confidence 66899999999999988752 34456677777888888888887776665544 44334443322211 221
Q ss_pred HHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+ . + ......++++++++..++|++ ...||++++++.++.+. ||||+|||+|++
T Consensus 186 -~-------~-~------------~~~~~~~~v~~vr~~~~~Pv~--vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 186 -R-------N-P------------VSADVKELVKRVRKYTDVPVL--VGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred -C-------c-c------------cchhHHHHHHHHHHhcCCCeE--EecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 0 0 0 001135678889998899998 68999999999999999 999999999996
No 71
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.46 E-value=5.8e-13 Score=125.34 Aligned_cols=190 Identities=23% Similarity=0.253 Sum_probs=123.8
Q ss_pred HHHHHHHHcCCcEEEecc-CC-cccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc---HHHHHHHHHcCCCEEEe
Q 021609 46 EQARVAEEAGACAVMALE-RV-PADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH---FVEAQILEAIGIDYVDE 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~-~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~---~~~a~~~~~aGad~Vi~ 120 (310)
+.++.++++|+++| +|| .+ +......+........+.++.+++.+++||++|..... .+.++.+.++|+|+++.
T Consensus 116 ~~a~~~~~~gad~i-ElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 116 DYARQIEEAGADAL-ELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred HHHHHHHhcCCCEE-EEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence 56888889999987 777 33 22222212111011236777888888999999987542 35667788888888853
Q ss_pred CCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHH
Q 021609 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVF 200 (310)
Q Consensus 121 ~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~ 200 (310)
......... +..+. ..+ .+++.++..
T Consensus 195 ~nt~~~~~i---------------d~~~~-----------~~~--~~~glSG~~-------------------------- 220 (325)
T cd04739 195 FNRFYQPDI---------------DLETL-----------EVV--PNLLLSSPA-------------------------- 220 (325)
T ss_pred EcCcCCCCc---------------ccccc-----------cee--cCCCcCCcc--------------------------
Confidence 332100000 00000 000 011112210
Q ss_pred HhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhh
Q 021609 201 TFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEV 280 (310)
Q Consensus 201 ~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~ 280 (310)
.....++++.++++..++||+ +.|||.|++|+.+.+.+|||+|++||+++. ..|. ...++.+.+++|++.++
T Consensus 221 ----~~~~al~~v~~v~~~~~ipIi--g~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~-~gp~-~~~~i~~~L~~~l~~~g 292 (325)
T cd04739 221 ----EIRLPLRWIAILSGRVKASLA--ASGGVHDAEDVVKYLLAGADVVMTTSALLR-HGPD-YIGTLLAGLEAWMEEHG 292 (325)
T ss_pred ----chhHHHHHHHHHHcccCCCEE--EECCCCCHHHHHHHHHcCCCeeEEehhhhh-cCch-HHHHHHHHHHHHHHHcC
Confidence 001235667778777789998 789999999999999999999999999997 3454 66679999999999999
Q ss_pred hhhhhhhcccchhcccCcc
Q 021609 281 LAEVSCGLGEAMVGLNLSD 299 (310)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~ 299 (310)
+.++++..|. |-..++++
T Consensus 293 ~~~i~e~~G~-~~~~~~~~ 310 (325)
T cd04739 293 YESVQQLRGS-MSQKNVPD 310 (325)
T ss_pred CCCHHHHhcc-cccccCCC
Confidence 9999999994 33334444
No 72
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.45 E-value=1e-12 Score=127.92 Aligned_cols=189 Identities=22% Similarity=0.257 Sum_probs=126.7
Q ss_pred HHHHHHHHcCCcEEEecc-CCcc-cccccCCCCCCCCHHHHHHH----HhhcCcceeeccccCc---HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALE-RVPA-DIRSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGH---FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~-~~~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~---~~~a~~~~~aGad 116 (310)
+.|+.+++.|+++| +|| .+|. ......|+.+..+++.+.++ ++.+++||++|++.+. .+.++.++++|||
T Consensus 117 ~~a~~~~~~g~d~i-elN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gad 195 (420)
T PRK08318 117 EIAPLVEETGADGI-ELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGAD 195 (420)
T ss_pred HHHHHHHhcCCCEE-EEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCC
Confidence 46778888999987 888 4544 32233456666667665554 5567899999998652 3566888899999
Q ss_pred EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCC----CCcchHHHHHHHHhhccceEeec
Q 021609 117 YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEA----GTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~----~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
+++..+.+..... ++..+. .+ .-.+|++. ++|..
T Consensus 196 gi~~~Nt~~~~~~--------------id~~~~--------~~--~p~~~~~~~~gg~SG~a------------------ 233 (420)
T PRK08318 196 AVSLINTINSITG--------------VDLDRM--------IP--MPIVNGKSSHGGYCGPA------------------ 233 (420)
T ss_pred EEEEecccCcccc--------------cccccc--------CC--CceecCCCCcccccchh------------------
Confidence 9963332111000 000000 00 00123221 11110
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcC---CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLG---RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~---~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
...-.++++.++++.. ++||+ ++|||.|++|+.+.+.+|||+|+++|+++. .+| ...+++.
T Consensus 234 ------------~~p~~l~~v~~~~~~~~~~~ipIi--g~GGI~s~~da~e~i~aGA~~Vqi~ta~~~-~gp-~ii~~I~ 297 (420)
T PRK08318 234 ------------VKPIALNMVAEIARDPETRGLPIS--GIGGIETWRDAAEFILLGAGTVQVCTAAMQ-YGF-RIVEDMI 297 (420)
T ss_pred ------------hhHHHHHHHHHHHhccccCCCCEE--eecCcCCHHHHHHHHHhCCChheeeeeecc-CCc-hhHHHHH
Confidence 0011367788887765 79998 889999999999999999999999999997 344 5777799
Q ss_pred HHHhccCChhhhhhhhhhcccchh
Q 021609 270 RAVTHYSDPEVLAEVSCGLGEAMV 293 (310)
Q Consensus 270 ~~i~~~~~~~~~~~~~~~~~~~~~ 293 (310)
..+.++++..++.++++.+|.+..
T Consensus 298 ~~L~~~l~~~g~~si~e~iG~~~~ 321 (420)
T PRK08318 298 SGLSHYMDEKGFASLEDMVGLAVP 321 (420)
T ss_pred HHHHHHHHHcCcchHHHHhccccc
Confidence 999999998888899999986553
No 73
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.45 E-value=6.5e-13 Score=125.49 Aligned_cols=190 Identities=22% Similarity=0.254 Sum_probs=123.5
Q ss_pred HHHHHHHHcCCcEEEecc-CC-cccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc---HHHHHHHHHcCCCEEEe
Q 021609 46 EQARVAEEAGACAVMALE-RV-PADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH---FVEAQILEAIGIDYVDE 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~-~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~---~~~a~~~~~aGad~Vi~ 120 (310)
+.++.++++|+++| +|| .+ |......++.......+.++++++.+++||++|...+. .+.++.+.++|+|+|..
T Consensus 118 ~~a~~~~~agad~i-elN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 118 DYARQIEQAGADAL-ELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred HHHHHHHHcCCCEE-EEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 56788889999987 776 23 22222112111111246778888889999999977542 35567778888888853
Q ss_pred CCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHH
Q 021609 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVF 200 (310)
Q Consensus 121 ~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~ 200 (310)
......... +.+... . ..+++.++..
T Consensus 197 ~n~~~~~~~------------------d~~~~~--------~--~~~~glsg~~-------------------------- 222 (334)
T PRK07565 197 FNRFYQPDI------------------DLETLE--------V--VPGLVLSTPA-------------------------- 222 (334)
T ss_pred ECCcCCCCc------------------Chhhcc--------c--ccCCCCCCch--------------------------
Confidence 322100000 000000 0 0011122110
Q ss_pred HhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhh
Q 021609 201 TFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEV 280 (310)
Q Consensus 201 ~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~ 280 (310)
.....++.+.++++..++||+ ++|||.|++|+.+++.+|||+|+++|+++. +.| ...+++.+.+++++...+
T Consensus 223 ----~~~~al~~v~~~~~~~~ipIi--g~GGI~s~~Da~e~l~aGA~~V~v~t~~~~-~g~-~~~~~i~~~L~~~l~~~g 294 (334)
T PRK07565 223 ----ELRLPLRWIAILSGRVGADLA--ATTGVHDAEDVIKMLLAGADVVMIASALLR-HGP-DYIGTILRGLEDWMERHG 294 (334)
T ss_pred ----hhhHHHHHHHHHHhhcCCCEE--EECCCCCHHHHHHHHHcCCCceeeehHHhh-hCc-HHHHHHHHHHHHHHHHcC
Confidence 001124567777777789998 789999999999999999999999999997 345 466779999999999999
Q ss_pred hhhhhhhcccchhcccCcc
Q 021609 281 LAEVSCGLGEAMVGLNLSD 299 (310)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~ 299 (310)
+.++++..| .+.-.|..+
T Consensus 295 ~~~i~e~~g-~~~~~~~~~ 312 (334)
T PRK07565 295 YESLQQFRG-SMSQKNVPD 312 (334)
T ss_pred CCCHHHHhc-ccccccCCC
Confidence 999999999 454455555
No 74
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=99.44 E-value=4.8e-12 Score=110.49 Aligned_cols=168 Identities=25% Similarity=0.336 Sum_probs=128.6
Q ss_pred HHHHHHcCCCEEE----eCC--CCCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHh-----CCCEEE--EcCC--CC
Q 021609 107 AQILEAIGIDYVD----ESE--VLTPADEENHINKHNFR-IPFVCGCRNLGEALRRIRE-----GAAMIR--TKGE--AG 170 (310)
Q Consensus 107 a~~~~~aGad~Vi----~~~--~~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~-----Gad~V~--v~g~--~~ 170 (310)
.+.+..+|.+.|. ..+ .-.-..+.+.+...++- +++..+|+|.+||.+.+++ +-++|+ |.+. ..
T Consensus 33 ~~av~asg~~ivTvAlRR~~~~~~~~~~~l~~l~~~~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tL 112 (262)
T COG2022 33 AEAVRASGSEIVTVALRRVNATRPGGDGILDLLIPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTL 112 (262)
T ss_pred HHHHHhcCCceEEEEEEeecccCCCcchHHHHhhhcCcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCccc
Confidence 4555667777763 111 11244566666665665 8999999999999887643 667877 3343 34
Q ss_pred CcchHHHHHHHHhhccc-eEeecccChhHHHHh------h-------------hccCCcHHHHHHHhhcCCCCEEEeCCC
Q 021609 171 TGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTF------A-------------KKIAAPYDLVMQTKQLGRLPVVHFAAG 230 (310)
Q Consensus 171 ~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~------~-------------~~~~~~~~~i~~i~~~~~iPVi~iA~G 230 (310)
.++..+++++.+.+.+. |.++||+++|+++.- | .+.. ....++.+.+..++|||+ ..
T Consensus 113 lPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~-n~~~l~iiie~a~VPviV--DA 189 (262)
T COG2022 113 LPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQ-NPYNLEIIIEEADVPVIV--DA 189 (262)
T ss_pred CCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEeccccccccCCcCcC-CHHHHHHHHHhCCCCEEE--eC
Confidence 77888999999998888 999999999998731 0 1111 234567777777999994 69
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 231 GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
||.++.|+..++++|||+|++.++|.++.||..+|+.|..+++.++.
T Consensus 190 GiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~AGrl 236 (262)
T COG2022 190 GIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVEAGRL 236 (262)
T ss_pred CCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999987654
No 75
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.44 E-value=1.2e-11 Score=109.47 Aligned_cols=170 Identities=16% Similarity=0.239 Sum_probs=121.2
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC----cceeeccccCcHHHHHHHHHcCCCEEEe
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT----IPVMAKARIGHFVEAQILEAIGIDYVDE 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~----iPv~vk~~~~~~~~a~~~~~aGad~Vi~ 120 (310)
+.++++.++|...+ +-++ . ...++.++++++.+. +.+.+... -..++++.+.++|+++++.
T Consensus 29 ~~~~al~~~Gi~~iEit~~-------~------~~a~~~i~~l~~~~~~~p~~~vGaGTV-~~~~~~~~a~~aGA~Fivs 94 (213)
T PRK06552 29 KISLAVIKGGIKAIEVTYT-------N------PFASEVIKELVELYKDDPEVLIGAGTV-LDAVTARLAILAGAQFIVS 94 (213)
T ss_pred HHHHHHHHCCCCEEEEECC-------C------ccHHHHHHHHHHHcCCCCCeEEeeeeC-CCHHHHHHHHHcCCCEEEC
Confidence 46888899998876 2231 0 112678888887763 33333333 2458899999999999974
Q ss_pred CCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHH
Q 021609 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVF 200 (310)
Q Consensus 121 ~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~ 200 (310)
+. -..++.+..+ ..+++++.+++|+.|+..+.+.|+|+|++++....
T Consensus 95 P~--~~~~v~~~~~--~~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa~~~----------------------------- 141 (213)
T PRK06552 95 PS--FNRETAKICN--LYQIPYLPGCMTVTEIVTALEAGSEIVKLFPGSTL----------------------------- 141 (213)
T ss_pred CC--CCHHHHHHHH--HcCCCEECCcCCHHHHHHHHHcCCCEEEECCcccC-----------------------------
Confidence 43 2455655554 36899999999999999999999999999753211
Q ss_pred HhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC------CCHHHHHHHHHHHHh
Q 021609 201 TFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS------GDPVKRAQAIVRAVT 273 (310)
Q Consensus 201 ~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a------~dp~~~a~~l~~~i~ 273 (310)
+ .+.++.++... ++|++ +.||| +++++.+++++|++++.+||.++.+ +++...++++.+.++
T Consensus 142 ------G--~~~ik~l~~~~p~ip~~--atGGI-~~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 142 ------G--PSFIKAIKGPLPQVNVM--VTGGV-NLDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred ------C--HHHHHHHhhhCCCCEEE--EECCC-CHHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 1 33455555433 48998 67999 6999999999999999999999976 355556665555543
No 76
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.43 E-value=5.8e-12 Score=117.20 Aligned_cols=188 Identities=17% Similarity=0.187 Sum_probs=130.3
Q ss_pred ecchhhhhhCcccccCCC-HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh-cCcceeecccc---
Q 021609 27 KVGLAQMLRGGVIMDVVT-PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKARI--- 101 (310)
Q Consensus 27 ~~~~~~~~~~g~i~~~~~-~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~--- 101 (310)
++|++| |.|.++++ +++|.++.++|+-+++.+...+.+ ..-+.++++++. ++.|+.++...
T Consensus 2 ~yPIiq----gpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e----------~l~~~i~~~~~l~tdkPfGVnl~~~~~ 67 (320)
T cd04743 2 RYPIVQ----GPMTRVSDVAEFAVAVAEGGGLPFIALALMRGE----------QVKALLEETAELLGDKPWGVGILGFVD 67 (320)
T ss_pred CCCEEC----CCcCCCCCcHHHHHHHHhCCccccCCCCCCCHH----------HHHHHHHHHHHhccCCCeEEEEeccCC
Confidence 588888 77889988 899999999998876444211100 012356666764 68899998632
Q ss_pred C--cHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHH
Q 021609 102 G--HFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVR 179 (310)
Q Consensus 102 ~--~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~ 179 (310)
. ..+.++.+.+.++..|+.+... |.. .+.++ ..++.++..+.|+.+++++.+.|+|.|.+.|+..+||+-
T Consensus 68 ~~~~~~~l~vi~e~~v~~V~~~~G~-P~~-~~~lk--~~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G---- 139 (320)
T cd04743 68 TELRAAQLAVVRAIKPTFALIAGGR-PDQ-ARALE--AIGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHVG---- 139 (320)
T ss_pred CcchHHHHHHHHhcCCcEEEEcCCC-hHH-HHHHH--HCCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCCC----
Confidence 1 2356788889999999755432 333 34444 357888889999999999999999999999886666521
Q ss_pred HHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh------hcCCCCEEEeCCCCCCCHHHHHHHHHcCC-------
Q 021609 180 HVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK------QLGRLPVVHFAAGGVATPADAAMMMQLGC------- 246 (310)
Q Consensus 180 ~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~------~~~~iPVi~iA~GGI~t~~d~~~~l~~Ga------- 246 (310)
.++++ ......+..+. ...++||+ ++|||.+...+..++.+||
T Consensus 140 ----------~~~t~------------~L~~~v~~~l~~~~~~~~~~~iPVi--AAGGI~dgr~~aaalaLGA~~~~~Ga 195 (320)
T cd04743 140 ----------PRSSF------------VLWESAIDALLAANGPDKAGKIHLL--FAGGIHDERSAAMVSALAAPLAERGA 195 (320)
T ss_pred ----------CCCch------------hhHHHHHHHHHHhhcccccCCccEE--EEcCCCCHHHHHHHHHcCCccccccc
Confidence 00000 00011222222 11379998 7899999999999999998
Q ss_pred -CEEEEccccccCCC
Q 021609 247 -DGVFVGSGVFKSGD 260 (310)
Q Consensus 247 -dgV~VGsai~~a~d 260 (310)
+||.+||+|+-++.
T Consensus 196 ~~GV~mGTrFl~t~E 210 (320)
T cd04743 196 KVGVLMGTAYLFTEE 210 (320)
T ss_pred ccEEEEccHHhcchh
Confidence 89999999998543
No 77
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.43 E-value=1.9e-11 Score=115.02 Aligned_cols=196 Identities=20% Similarity=0.281 Sum_probs=129.3
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc---------C
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV---------T 92 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~---------~ 92 (310)
..+....|++. ..+..++++++|+++.+.|..+++..|-..++ ..+.++++++.+ .
T Consensus 32 ~~~~l~iPivs----a~MDtVte~~mAiama~~Gglgvih~~~~~e~-----------q~~~v~~vK~~~~~a~~d~~~~ 96 (352)
T PF00478_consen 32 RNITLKIPIVS----APMDTVTESEMAIAMARLGGLGVIHRNMSIEE-----------QAEEVKKVKRYYPNASKDEKGR 96 (352)
T ss_dssp TSEEESSSEEE-----SSTTTSSHHHHHHHHHTTSEEEEESSSCHHH-----------HHHHHHHHHTHHTTHHBHTTSC
T ss_pred CCEeecCceEe----cCccccchHHHHHHHHHhcCCceecCCCCHHH-----------HHHHHhhhcccccccccccccc
Confidence 56667778887 66888999999999999998888666411111 134566665431 3
Q ss_pred cceeecccc--CcHHHHHHHHHcCCCEEE--eCCCCC--chhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEE
Q 021609 93 IPVMAKARI--GHFVEAQILEAIGIDYVD--ESEVLT--PADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRT 165 (310)
Q Consensus 93 iPv~vk~~~--~~~~~a~~~~~aGad~Vi--~~~~~~--~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v 165 (310)
+.+.+-... ...+.++.+.++|+|.++ .++.-+ ..+..+.+++..++++++++ +-|.+-++.++++|+|.|.+
T Consensus 97 l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkV 176 (352)
T PF00478_consen 97 LLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKV 176 (352)
T ss_dssp BCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEE
T ss_pred ceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEE
Confidence 333333322 246788999999999995 444432 33556667665567888887 88999999999999999998
Q ss_pred cCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc-HHHHHHH---hhcCCCCEEEeCCCCCCCHHHHHHH
Q 021609 166 KGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-YDLVMQT---KQLGRLPVVHFAAGGVATPADAAMM 241 (310)
Q Consensus 166 ~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~~i~~i---~~~~~iPVi~iA~GGI~t~~d~~~~ 241 (310)
.-. .|.+|++- ... ..+.| ...+.+. ++...+||| |.|||++..|+.++
T Consensus 177 GiG--pGsiCtTr-----------~v~------------GvG~PQ~tAv~~~a~~a~~~~v~iI--ADGGi~~sGDi~KA 229 (352)
T PF00478_consen 177 GIG--PGSICTTR-----------EVT------------GVGVPQLTAVYECAEAARDYGVPII--ADGGIRTSGDIVKA 229 (352)
T ss_dssp SSS--SSTTBHHH-----------HHH------------SBSCTHHHHHHHHHHHHHCTTSEEE--EESS-SSHHHHHHH
T ss_pred ecc--CCcccccc-----------ccc------------ccCCcHHHHHHHHHHHhhhccCcee--ecCCcCcccceeee
Confidence 632 23444321 111 22222 3333333 233579998 88999999999999
Q ss_pred HHcCCCEEEEccccccCC
Q 021609 242 MQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 242 l~~GadgV~VGsai~~a~ 259 (310)
+.+|||+||+|+.|..++
T Consensus 230 la~GAd~VMlG~llAgt~ 247 (352)
T PF00478_consen 230 LAAGADAVMLGSLLAGTD 247 (352)
T ss_dssp HHTT-SEEEESTTTTTBT
T ss_pred eeecccceeechhhccCc
Confidence 999999999999999864
No 78
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.43 E-value=1.1e-12 Score=123.08 Aligned_cols=145 Identities=32% Similarity=0.534 Sum_probs=103.8
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHH----HHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIK----EIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~----~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.++|+|+| +|| |.+...+.++|+.++.+++.+. .+++.+++||.+|.+.++.+.
T Consensus 79 ~aa~~~~~~G~d~I-elN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~------------ 145 (319)
T TIGR00737 79 EAAKINEELGADII-DINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDA------------ 145 (319)
T ss_pred HHHHHHHhCCCCEE-EEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCC------------
Confidence 45777788999997 887 5555556667776666665544 456677899999988663110
Q ss_pred EeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhH
Q 021609 119 DESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~ 198 (310)
.. ...+-+.++.+.|+|++.+|++...+.
T Consensus 146 -------~~-------------------~~~~~a~~l~~~G~d~i~vh~r~~~~~------------------------- 174 (319)
T TIGR00737 146 -------HI-------------------NAVEAARIAEDAGAQAVTLHGRTRAQG------------------------- 174 (319)
T ss_pred -------cc-------------------hHHHHHHHHHHhCCCEEEEEccccccc-------------------------
Confidence 00 011234556678999999987532110
Q ss_pred HHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHH
Q 021609 199 VFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 199 ~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~ 263 (310)
+ .....++.++++++..++||+ ++|||.+++|+.+++ ..|||+|++|++++. ||+.
T Consensus 175 ---~--~~~~~~~~i~~i~~~~~ipvi--~nGgI~~~~da~~~l~~~gad~VmigR~~l~--~P~l 231 (319)
T TIGR00737 175 ---Y--SGEANWDIIARVKQAVRIPVI--GNGDIFSPEDAKAMLETTGCDGVMIGRGALG--NPWL 231 (319)
T ss_pred ---C--CCchhHHHHHHHHHcCCCcEE--EeCCCCCHHHHHHHHHhhCCCEEEEChhhhh--CChH
Confidence 0 123457888999988899998 789999999999999 689999999999997 7763
No 79
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.43 E-value=4.5e-12 Score=126.01 Aligned_cols=183 Identities=21% Similarity=0.274 Sum_probs=128.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~ 122 (310)
+.++.+.++|+.+| +|. .+.-+. .....+.+.++.+..+++++++++ .+.+.+.|+|+|. ...
T Consensus 311 ~~l~~~l~~Gv~~v-qlR-------~k~~~~~~~~~~a~~l~~~~~~~~~~liind~------~~lA~~~~adGvHl~~~ 376 (502)
T PLN02898 311 DAVRAAIEGGATIV-QLR-------EKEAETREFIEEAKACLAICRSYGVPLLINDR------VDVALACDADGVHLGQS 376 (502)
T ss_pred HHHHHHHHcCCCEE-EEc-------cCCCCHHHHHHHHHHHHHHHHHhCCEEEEcCh------HHHHHhcCCCEEEeChH
Confidence 46778889999876 773 221110 001122333344556889887764 4567889999996 444
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHh
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~ 202 (310)
+++..+.++. .+.+..+++++|+.+++.++.+.|+|||.+.. . +++.++..
T Consensus 377 d~~~~~~r~~---~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gp-i---------------------f~t~tk~~---- 427 (502)
T PLN02898 377 DMPVRLARSL---LGPGKIIGVSCKTPEQAEQAWKDGADYIGCGG-V---------------------FPTNTKAN---- 427 (502)
T ss_pred hcCHHHHHHh---cCCCCEEEEeCCCHHHHHHHhhcCCCEEEECC-e---------------------ecCCCCCC----
Confidence 4544444332 34668899999999999999999999998753 2 22222110
Q ss_pred hhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCC---EEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 203 AKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD---GVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 203 ~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gad---gV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.....++.++++.+..++||++ .||| +++++.+++++|++ +|.++++|++++||...++++.+.++..+
T Consensus 428 --~~~~g~~~~~~~~~~~~~Pv~a--iGGI-~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~~~~~~ 499 (502)
T PLN02898 428 --NKTIGLDGLREVCEASKLPVVA--IGGI-SASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAILTEAL 499 (502)
T ss_pred --CCCCCHHHHHHHHHcCCCCEEE--ECCC-CHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHHHHHHh
Confidence 1122367778877777899994 5999 69999999999999 99999999999999999999988876533
No 80
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.42 E-value=2.3e-12 Score=120.74 Aligned_cols=154 Identities=22% Similarity=0.262 Sum_probs=106.4
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----HhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+++.|+++| +|| |+++..+...|+.++.+++.+.++ ++++++||.+|.++++.+.
T Consensus 71 ~aA~~~~~~g~d~I-DlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~------------ 137 (318)
T TIGR00742 71 KCAKIAEKRGYDEI-NLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPL------------ 137 (318)
T ss_pred HHHHHHHhCCCCEE-EEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCc------------
Confidence 45667778899987 888 666655555588888888766665 5667899999999874211
Q ss_pred EeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCC--CcchHHHHHHHHhhccceEeecccCh
Q 021609 119 DESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAG--TGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~--~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
.+..+. .+-+..+.+.|++.|.+|+++. ++. +.
T Consensus 138 -----~~~~~~-------------------~~~~~~l~~~G~~~itvHgRt~~~qg~---------------------sg 172 (318)
T TIGR00742 138 -----DSYEFL-------------------CDFVEIVSGKGCQNFIVHARKAWLSGL---------------------SP 172 (318)
T ss_pred -----chHHHH-------------------HHHHHHHHHcCCCEEEEeCCchhhcCC---------------------Cc
Confidence 000011 1224556678999999998752 110 00
Q ss_pred hHHHHhhhcc-CCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Q 021609 197 DEVFTFAKKI-AAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 197 d~~~~~~~~~-~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~ 266 (310)
... ... ...++.+.++++.. ++||+ ++|||.|++|+.+++. |||+||+|++++. ||+...+
T Consensus 173 ~~~----~~~~~~~~~~i~~vk~~~~~ipVi--~NGdI~s~~da~~~l~-g~dgVMigRgal~--nP~if~~ 235 (318)
T TIGR00742 173 KEN----REIPPLRYERVYQLKKDFPHLTIE--INGGIKNSEQIKQHLS-HVDGVMVGREAYE--NPYLLAN 235 (318)
T ss_pred ccc----ccCCchhHHHHHHHHHhCCCCcEE--EECCcCCHHHHHHHHh-CCCEEEECHHHHh--CCHHHHH
Confidence 000 001 22477788887765 89998 7999999999999886 9999999999997 8885443
No 81
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.42 E-value=3.9e-12 Score=118.44 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=68.9
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcc
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLG 289 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~ 289 (310)
++.++++++..++||+ +.|||.+++|+.+++.+|||+|++||+++. +| ...+++.+.+.++++.+++.++++..|
T Consensus 223 l~~v~~i~~~~~ipvi--~~GGI~s~~da~~~l~~GAd~V~igr~~l~--~p-~~~~~i~~~l~~~~~~~g~~~~~e~~g 297 (300)
T TIGR01037 223 LRMVYDVYKMVDIPII--GVGGITSFEDALEFLMAGASAVQVGTAVYY--RG-FAFKKIIEGLIAFLKAEGFTSIEELIG 297 (300)
T ss_pred HHHHHHHHhcCCCCEE--EECCCCCHHHHHHHHHcCCCceeecHHHhc--Cc-hHHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 4677788887889998 789999999999999999999999999997 67 466779999999999999999999998
Q ss_pred cc
Q 021609 290 EA 291 (310)
Q Consensus 290 ~~ 291 (310)
.+
T Consensus 298 ~~ 299 (300)
T TIGR01037 298 IA 299 (300)
T ss_pred cC
Confidence 75
No 82
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.41 E-value=1.5e-11 Score=107.65 Aligned_cols=179 Identities=18% Similarity=0.252 Sum_probs=119.8
Q ss_pred cCCCH----HHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhh-cCcceeeccccCc--HHHHHHHHH
Q 021609 41 DVVTP----EQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKARIGH--FVEAQILEA 112 (310)
Q Consensus 41 ~~~~~----~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~~--~~~a~~~~~ 112 (310)
|+.++ +.++.+.+. ++++ .+. +. ...++ ++.++.+++. .++|+.+.....+ ...++.+.+
T Consensus 8 d~~~~~~~~~~~~~l~~~-i~~i-eig~~~---~~~~g-------~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~ 75 (202)
T cd04726 8 DLLDLEEALELAKKVPDG-VDII-EAGTPL---IKSEG-------MEAVRALREAFPDKIIVADLKTADAGALEAEMAFK 75 (202)
T ss_pred cCCCHHHHHHHHHHhhhc-CCEE-EcCCHH---HHHhC-------HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHh
Confidence 44555 355666666 7765 432 11 12223 6888888876 5889888544322 245788999
Q ss_pred cCCCEEEeCCCCC---chhHHHHHHhcCCCCcEE---EecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhcc
Q 021609 113 IGIDYVDESEVLT---PADEENHINKHNFRIPFV---CGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 113 aGad~Vi~~~~~~---~~~~~~~i~~~~~~i~~~---v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~ 186 (310)
+|+|+++.+.... ..++.+.+++ .++.++ .++.|.+++.++...|+|++.++.. +.+.
T Consensus 76 aGad~i~~h~~~~~~~~~~~i~~~~~--~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~-~~~~------------- 139 (202)
T cd04726 76 AGADIVTVLGAAPLSTIKKAVKAAKK--YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRG-IDAQ------------- 139 (202)
T ss_pred cCCCEEEEEeeCCHHHHHHHHHHHHH--cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCc-cccc-------------
Confidence 9999997443222 3345555554 355554 5788999999888889999988532 1110
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~ 266 (310)
+ .+.....+.++++++..++|+. +.||| +++++.++++.|+|++++||+|++++||....+
T Consensus 140 ------~----------~~~~~~~~~i~~~~~~~~~~i~--~~GGI-~~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 140 ------A----------AGGWWPEDDLKKVKKLLGVKVA--VAGGI-TPDTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred ------c----------cCCCCCHHHHHHHHhhcCCCEE--EECCc-CHHHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 0 0011234566666654678998 67999 599999999999999999999999999876654
No 83
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=99.41 E-value=1.4e-11 Score=108.34 Aligned_cols=184 Identities=14% Similarity=0.165 Sum_probs=119.2
Q ss_pred HHHHHHHHHcCCcEEEecc--CCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc-CcHHHHHHHHHcCCCEEEeC
Q 021609 45 PEQARVAEEAGACAVMALE--RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI-GHFVEAQILEAIGIDYVDES 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~--~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~-~~~~~a~~~~~aGad~Vi~~ 121 (310)
.+.++.+.++|++.| +++ ..+... + ....++.++++++.++.|+.+.... +..+.++.+.++|+|+|+.+
T Consensus 14 ~~~~~~~~~~g~d~i-~~~~~Dg~~~~----~--~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh 86 (210)
T TIGR01163 14 GEEVKAVEEAGADWI-HVDVMDGHFVP----N--LTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVH 86 (210)
T ss_pred HHHHHHHHHcCCCEE-EEcCCCCCCCC----C--cccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEc
Confidence 378899999999987 442 111100 1 1123789999997777886543322 33466788889999998654
Q ss_pred CCC--CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCC--CCCcchHHHHHHHHhhccceEeecccChh
Q 021609 122 EVL--TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGE--AGTGNIIEAVRHVRSVMGDIRVLRNMDDD 197 (310)
Q Consensus 122 ~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~--~~~~~~~~~~~~~r~~~~~~~~l~~~~~d 197 (310)
... ......+.+++.+..+.+++++++..+..+....++|++.+.+. +.++. ..
T Consensus 87 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~-------------------~~--- 144 (210)
T TIGR01163 87 PEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQ-------------------KF--- 144 (210)
T ss_pred cCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcc-------------------cc---
Confidence 432 23344455555555555666777777777777778998765432 11221 00
Q ss_pred HHHHhhhccCCcHHHHHHHhhc-----CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 198 EVFTFAKKIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~i~~~-----~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
....++.++++++. .++|+. +.||| +++++.++++.|+|++++||+|++++||...++++
T Consensus 145 --------~~~~~~~i~~i~~~~~~~~~~~~i~--v~GGI-~~env~~l~~~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 145 --------IPDTLEKIREVRKMIDENGLSILIE--VDGGV-NDDNARELAEAGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred --------cHHHHHHHHHHHHHHHhcCCCceEE--EECCc-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHh
Confidence 01112334444332 136887 56999 58999999999999999999999999998887754
No 84
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=99.40 E-value=5.2e-12 Score=109.11 Aligned_cols=162 Identities=22% Similarity=0.275 Sum_probs=108.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~ 122 (310)
+.+.++.++|++.+ +|+ .+..+. +....+.+.++.+..++|++++++ .+.+.+.|+|+|. ...
T Consensus 16 ~~l~~~~~~gv~~v-~lR-------~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~------~~la~~~~~dGvHl~~~ 81 (180)
T PF02581_consen 16 EQLEAALAAGVDLV-QLR-------EKDLSDEELLELARRLAELCQKYGVPLIINDR------VDLALELGADGVHLGQS 81 (180)
T ss_dssp HHHHHHHHTT-SEE-EEE--------SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-------HHHHHHCT-SEEEEBTT
T ss_pred HHHHHHHHCCCcEE-EEc-------CCCCCccHHHHHHHHHHHHhhcceEEEEecCC------HHHHHhcCCCEEEeccc
Confidence 56778889998876 773 221010 011123444445567899998774 4568889999996 555
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHh
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~ 202 (310)
.++..+..+.+ +.+..+.++||+.+|+..+.+.|+||+.+.+- +++.++.+
T Consensus 82 ~~~~~~~r~~~---~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpv----------------------f~T~sk~~---- 132 (180)
T PF02581_consen 82 DLPPAEARKLL---GPDKIIGASCHSLEEAREAEELGADYVFLGPV----------------------FPTSSKPG---- 132 (180)
T ss_dssp SSSHHHHHHHH---TTTSEEEEEESSHHHHHHHHHCTTSEEEEETS----------------------S--SSSSS----
T ss_pred ccchHHhhhhc---ccceEEEeecCcHHHHHHhhhcCCCEEEECCc----------------------cCCCCCcc----
Confidence 56666665544 45789999999999999999999999987642 22222110
Q ss_pred hhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccc
Q 021609 203 AKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 203 ~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai 255 (310)
.....++.+.++++..++||+++ ||| +++++.++.++|++||.+.|+|
T Consensus 133 --~~~~g~~~l~~~~~~~~~pv~Al--GGI-~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 133 --APPLGLDGLREIARASPIPVYAL--GGI-TPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp ---TTCHHHHHHHHHHHTSSCEEEE--SS---TTTHHHHHHTT-SEEEESHHH
T ss_pred --ccccCHHHHHHHHHhCCCCEEEE--cCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence 01223677778887788999954 999 7999999999999999999875
No 85
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.40 E-value=6.8e-12 Score=116.54 Aligned_cols=182 Identities=25% Similarity=0.367 Sum_probs=117.0
Q ss_pred HHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHH----HHHHHHhhcCcceeeccccCc---HHHHHHHHHcCCCE
Q 021609 46 EQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQ----LIKEIKQSVTIPVMAKARIGH---FVEAQILEAIGIDY 117 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~----~i~~i~~~~~iPv~vk~~~~~---~~~a~~~~~aGad~ 117 (310)
+.|+.++++|+|+| +|| .+|...+ .|..+..+++ .++.+++.+++||.+|...+. .+.++.+.++|+|+
T Consensus 106 ~~a~~~~~~G~d~i-ElN~~cP~~~~--~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~ 182 (296)
T cd04740 106 EVAEKLADAGADAI-ELNISCPNVKG--GGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADG 182 (296)
T ss_pred HHHHHHHHcCCCEE-EEECCCCCCCC--CcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCE
Confidence 46888889999987 777 4443211 1333444454 455667777999999986542 24456677778877
Q ss_pred EEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEE-cCCCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 118 VDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRT-KGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 118 Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v-~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
+...+...- .. ++.++.. ..+.. .++ .++..
T Consensus 183 i~~~nt~~g-----------~~----~~~~~~~----------~~~~~~~gg-~sg~~---------------------- 214 (296)
T cd04740 183 LTLINTLKG-----------MA----IDIETRK----------PILGNVTGG-LSGPA---------------------- 214 (296)
T ss_pred EEEECCCcc-----------cc----cccccCc----------eeecCCcce-ecCcc----------------------
Confidence 642211000 00 0000000 00000 000 01100
Q ss_pred hHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.....+++++++++..++||+ +.|||.+++|+.+++++|||+|++||+++. ||.. .+++.+.+.+++
T Consensus 215 --------~~~~~~~~i~~i~~~~~ipii--~~GGI~~~~da~~~l~~GAd~V~igra~l~--~p~~-~~~i~~~l~~~~ 281 (296)
T cd04740 215 --------IKPIALRMVYQVYKAVEIPII--GVGGIASGEDALEFLMAGASAVQVGTANFV--DPEA-FKEIIEGLEAYL 281 (296)
T ss_pred --------cchHHHHHHHHHHHhcCCCEE--EECCCCCHHHHHHHHHcCCCEEEEchhhhc--ChHH-HHHHHHHHHHHH
Confidence 001235677888887789998 789999999999999999999999999997 8864 455999999999
Q ss_pred Chhhhhhhhhhcccc
Q 021609 277 DPEVLAEVSCGLGEA 291 (310)
Q Consensus 277 ~~~~~~~~~~~~~~~ 291 (310)
+.+++.++++..|.+
T Consensus 282 ~~~g~~~~~~~~g~~ 296 (296)
T cd04740 282 DEEGIKSIEELVGLA 296 (296)
T ss_pred HHcCCCCHHHHhCcC
Confidence 999999999988853
No 86
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.39 E-value=1.8e-12 Score=123.15 Aligned_cols=229 Identities=20% Similarity=0.218 Sum_probs=127.7
Q ss_pred ceeEEEeeCCce-eeeec-cCcceeecchhhhhhCcccccC-------CCHH-HHHHHHHcCCcEE-EeccCCccccccc
Q 021609 4 TGVVAVYGNDGA-ITETK-KSPFSVKVGLAQMLRGGVIMDV-------VTPE-QARVAEEAGACAV-MALERVPADIRSQ 72 (310)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~i~~~-------~~~~-~A~~~~~~Ga~~i-~~L~~~~~~~~~~ 72 (310)
+|+...+||.++ +..++ ...|.+.+...+ .+.++.++ .+++ ..++.+..+|+++ +.+|+........
T Consensus 89 ~G~~~~~Gs~~~~~~~~~~~~~~~~vr~~~p--~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~ 166 (352)
T PRK05437 89 LGIAMGVGSQRAALKDPELADSFSVVRKVAP--DGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPE 166 (352)
T ss_pred cCCCeEecccHhhccChhhHHHHHHHHHHCC--CceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCC
Confidence 688899999998 55555 566665444432 01122222 1244 4445566788887 5666322222221
Q ss_pred CCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHH
Q 021609 73 GGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEA 152 (310)
Q Consensus 73 ~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea 152 (310)
+...+....+.++++++.+++||++|..... .+.+++
T Consensus 167 g~~~f~~~le~i~~i~~~~~vPVivK~~g~g-------------------------------------------~s~~~a 203 (352)
T PRK05437 167 GDRDFRGWLDNIAEIVSALPVPVIVKEVGFG-------------------------------------------ISKETA 203 (352)
T ss_pred CcccHHHHHHHHHHHHHhhCCCEEEEeCCCC-------------------------------------------CcHHHH
Confidence 1111111236888889889999999975210 223456
Q ss_pred HHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCC
Q 021609 153 LRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGG 231 (310)
Q Consensus 153 ~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GG 231 (310)
+.+.+.|+|+|.++|+++++-. ..+.+|.... ....++.. | ..+....+.++++. .++||+ ++||
T Consensus 204 ~~l~~~Gvd~I~Vsg~GGt~~~--~ie~~R~~~~--~~~~~~~~-----~---g~pt~~~l~~i~~~~~~ipvi--a~GG 269 (352)
T PRK05437 204 KRLADAGVKAIDVAGAGGTSWA--AIENYRARDD--RLASYFAD-----W---GIPTAQSLLEARSLLPDLPII--ASGG 269 (352)
T ss_pred HHHHHcCCCEEEECCCCCCCcc--chhhhhhhcc--cccccccc-----c---cCCHHHHHHHHHHhcCCCeEE--EECC
Confidence 6666667777777665443311 1122221000 00011110 0 12234566666665 479998 7899
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccC--C-CHH---HHHHHHHHHHhccCChhhhhhhhhhcccc
Q 021609 232 VATPADAAMMMQLGCDGVFVGSGVFKS--G-DPV---KRAQAIVRAVTHYSDPEVLAEVSCGLGEA 291 (310)
Q Consensus 232 I~t~~d~~~~l~~GadgV~VGsai~~a--~-dp~---~~a~~l~~~i~~~~~~~~~~~~~~~~~~~ 291 (310)
|+++.|+.+++.+|||+|.+|++++.+ . .+. ...+.+...++..+..-++.+++++.+..
T Consensus 270 I~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~ 335 (352)
T PRK05437 270 IRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRKVP 335 (352)
T ss_pred CCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCCC
Confidence 999999999999999999999999973 1 122 23334445555544444445555554443
No 87
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.9e-12 Score=120.02 Aligned_cols=144 Identities=22% Similarity=0.353 Sum_probs=105.8
Q ss_pred HHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----HhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 47 QARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
+|+.+... +|+| +|| |+.-..+..-|+.++.+++++.++ ++.+++||.+|.|++...+
T Consensus 91 Aa~lv~~y-~D~i-dlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~------------- 155 (358)
T KOG2335|consen 91 AARLVQPY-CDGI-DLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLE------------- 155 (358)
T ss_pred HHHHhhhh-cCcc-cccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHH-------------
Confidence 44444444 4987 888 543333433488888888877765 5668999999999873111
Q ss_pred eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHH
Q 021609 120 ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 120 ~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~ 199 (310)
.|.+.++.+.++|++.+.|||++... ..
T Consensus 156 ---------------------------kTvd~ak~~e~aG~~~ltVHGRtr~~-------------------kg------ 183 (358)
T KOG2335|consen 156 ---------------------------KTVDYAKMLEDAGVSLLTVHGRTREQ-------------------KG------ 183 (358)
T ss_pred ---------------------------HHHHHHHHHHhCCCcEEEEecccHHh-------------------cC------
Confidence 24567888889999999999985210 00
Q ss_pred HHhhhccCCcHHHHHHHhhcCC-CCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHH
Q 021609 200 FTFAKKIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 200 ~~~~~~~~~~~~~i~~i~~~~~-iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~~ 264 (310)
.+....+++.++.+++... +||+ |+|+|.+.+|+.++++ +|+||||+|++++. ||+.+
T Consensus 184 ---~~~~pad~~~i~~v~~~~~~ipvi--aNGnI~~~~d~~~~~~~tG~dGVM~arglL~--NPa~F 243 (358)
T KOG2335|consen 184 ---LKTGPADWEAIKAVRENVPDIPVI--ANGNILSLEDVERCLKYTGADGVMSARGLLY--NPALF 243 (358)
T ss_pred ---CCCCCcCHHHHHHHHHhCcCCcEE--eeCCcCcHHHHHHHHHHhCCceEEecchhhc--Cchhh
Confidence 0123556899999988766 9998 8999999999999997 99999999999997 56543
No 88
>PRK04302 triosephosphate isomerase; Provisional
Probab=99.39 E-value=2.7e-11 Score=108.16 Aligned_cols=163 Identities=23% Similarity=0.315 Sum_probs=116.0
Q ss_pred HHHHHHHHhhcCcceeecccc----C---cHHHHHHHHHcCCCEEEeCCC---CCchhHHHHHHh-cCCCCcEEEecCCH
Q 021609 81 PQLIKEIKQSVTIPVMAKARI----G---HFVEAQILEAIGIDYVDESEV---LTPADEENHINK-HNFRIPFVCGCRNL 149 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~----~---~~~~a~~~~~aGad~Vi~~~~---~~~~~~~~~i~~-~~~~i~~~v~~~t~ 149 (310)
+..+..+++.+++|+.+++.. + ....++.+.++|+|+|+..+. +...++.+.+.. ...++.+++++++.
T Consensus 45 ~~~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~~ 124 (223)
T PRK04302 45 ALDIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNNP 124 (223)
T ss_pred HHHHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 677888888889999986432 1 134578899999999986553 445555555544 44688888899999
Q ss_pred HHHHHHHHhCCCEEEEcCC--CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEE
Q 021609 150 GEALRRIREGAAMIRTKGE--AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVH 226 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~g~--~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~ 226 (310)
+++.++.+.+.++|.+.+. .+++.. ..+..++ ...+..+.+++. .++|++
T Consensus 125 ~~~~~~~~~~~~~I~~~p~~~igt~~~----------------~~~~~~~----------~i~~~~~~ir~~~~~~pvi- 177 (223)
T PRK04302 125 ETSAAAAALGPDYVAVEPPELIGTGIP----------------VSKAKPE----------VVEDAVEAVKKVNPDVKVL- 177 (223)
T ss_pred HHHHHHhcCCCCEEEEeCccccccCCC----------------CCcCCHH----------HHHHHHHHHHhccCCCEEE-
Confidence 9999888889999987652 222200 0000000 012344445553 368998
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
++|||++++++.++++.|+|||+|||++++++||....++|...
T Consensus 178 -~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~~~ 221 (223)
T PRK04302 178 -CGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRDLVSP 221 (223)
T ss_pred -EECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHHhh
Confidence 68999999999999999999999999999999998887777654
No 89
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.39 E-value=1.1e-11 Score=128.66 Aligned_cols=191 Identities=17% Similarity=0.208 Sum_probs=131.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~ 122 (310)
+..+.+.++|+++| +| |.+.-+. .......+.++++..+++++++++ ++.+.+.|+| |. ...
T Consensus 23 ~~l~~~l~~g~~~i-ql-------R~K~~~~~~~~~~a~~l~~l~~~~~~~liind~------~~la~~~~~d-VHlg~~ 87 (755)
T PRK09517 23 GIVDSAISGGVSVV-QL-------RDKNAGVEDVRAAAKELKELCDARGVALVVNDR------LDVAVELGLH-VHIGQG 87 (755)
T ss_pred HHHHHHHhcCCCEE-EE-------eCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCh------HHHHHHcCCC-eecCCC
Confidence 56677888999876 77 3222110 111123444455667899998774 5678889999 85 555
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHH----h---CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccC
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIR----E---GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~----~---Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
+++....++.+ +.+..++++||+.+++.++.. . |+||+.+.+- +++.+
T Consensus 88 dl~~~~~r~~~---~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpv----------------------f~T~t 142 (755)
T PRK09517 88 DTPYTQARRLL---PAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPV----------------------ASTAT 142 (755)
T ss_pred cCCHHHHHHhc---CCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCc----------------------cccCC
Confidence 55544444332 456789999999999876432 2 4999987532 22222
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhcCC---CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQLGR---LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~~~---iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+.+. .....++.++++++..+ +||++| ||| +++++.+++++|++||.+.|+|++++||...++++.+++
T Consensus 143 K~~~-----~~~lG~~~l~~~~~~~~~~~iPv~Ai--GGI-~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~~~ 214 (755)
T PRK09517 143 KPDA-----PPALGVDGIAEIAAVAQDHGIASVAI--GGV-GLRNAAELAATGIDGLCVVSAIMAAANPAAAARELRTAF 214 (755)
T ss_pred CCCC-----CCCCCHHHHHHHHHhcCcCCCCEEEE--CCC-CHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHHHH
Confidence 2100 01123677777777666 999955 999 799999999999999999999999999999999999999
Q ss_pred hccCChhhhhhh
Q 021609 273 THYSDPEVLAEV 284 (310)
Q Consensus 273 ~~~~~~~~~~~~ 284 (310)
+....++...++
T Consensus 215 ~~~~~~~~~~~~ 226 (755)
T PRK09517 215 QPTRSPETQTEL 226 (755)
T ss_pred HHhhcccccccc
Confidence 887666553333
No 90
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.39 E-value=3e-12 Score=114.34 Aligned_cols=130 Identities=20% Similarity=0.213 Sum_probs=97.1
Q ss_pred HHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHHHh---hcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCC
Q 021609 52 EEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEIKQ---SVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLT 125 (310)
Q Consensus 52 ~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i~~---~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~ 125 (310)
...++++| +|| |+++..+...|+.++++++.+.++-+ ..++||.+|.+.+..+.
T Consensus 89 v~~~~d~I-diN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~------------------- 148 (231)
T TIGR00736 89 IAEHADII-EINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPL------------------- 148 (231)
T ss_pred HhcCCCEE-EEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcc-------------------
Confidence 34588976 888 77777777789999999987777643 34899999999763100
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
.+.+-++++.+.|+|.|.++... .+.
T Consensus 149 ---------------------~~~~~a~~l~~aGad~i~Vd~~~-~g~-------------------------------- 174 (231)
T TIGR00736 149 ---------------------DELIDALNLVDDGFDGIHVDAMY-PGK-------------------------------- 174 (231)
T ss_pred ---------------------hHHHHHHHHHHcCCCEEEEeeCC-CCC--------------------------------
Confidence 11233555667788888776421 110
Q ss_pred cCCcHHHHHHHhhcCC-CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 206 IAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~~-iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
....++.++++++..+ +||| ++|||.|++|+.+++++|||+|++||++++
T Consensus 175 ~~a~~~~I~~i~~~~~~ipII--gNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 175 PYADMDLLKILSEEFNDKIII--GNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred chhhHHHHHHHHHhcCCCcEE--EECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 0135788999988774 9998 899999999999999999999999999986
No 91
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.38 E-value=7.9e-12 Score=113.72 Aligned_cols=179 Identities=26% Similarity=0.315 Sum_probs=122.3
Q ss_pred HHHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHH-hhcCcceeeccccC------cH
Q 021609 45 PEQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIK-QSVTIPVMAKARIG------HF 104 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~-~~~~iPv~vk~~~~------~~ 104 (310)
.+.++.+.+.|||.| +|. |. |..+++. +|.+....++.+++++ +..++|+++....+ ..
T Consensus 29 ~~~~~~l~~~Gad~i-ElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e 107 (258)
T PRK13111 29 LEIIKALVEAGADII-ELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVE 107 (258)
T ss_pred HHHHHHHHHCCCCEE-EECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHH
Confidence 367888999999987 664 21 2222221 2444444578888888 45789988765443 34
Q ss_pred HHHHHHHHcCCCEEEeCCCCCch---hHHHHHHhcCCCCcEEEecCCH-HHHHHHHHhCCCEEEEcCCCC-CcchHHHHH
Q 021609 105 VEAQILEAIGIDYVDESEVLTPA---DEENHINKHNFRIPFVCGCRNL-GEALRRIREGAAMIRTKGEAG-TGNIIEAVR 179 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~~~~~---~~~~~i~~~~~~i~~~v~~~t~-~ea~~~~~~Gad~V~v~g~~~-~~~~~~~~~ 179 (310)
.+.+.+.++|+|+++.++. +++ ++.+.+++++.....+++.++. +.+....+...++|.+-+..+ ||. .
T Consensus 108 ~f~~~~~~aGvdGviipDL-p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~-~---- 181 (258)
T PRK13111 108 RFAADAAEAGVDGLIIPDL-PPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGA-R---- 181 (258)
T ss_pred HHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCc-c----
Confidence 6689999999999988764 344 4445555566676677777775 445556666667775432222 331 0
Q ss_pred HHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 180 HVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 180 ~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
... ....+.++.+++..++|++ .++||++++|+.+++.. ||||+|||+|++
T Consensus 182 ------------------------~~~~~~~~~~i~~vk~~~~~pv~--vGfGI~~~e~v~~~~~~-ADGviVGSaiv~ 233 (258)
T PRK13111 182 ------------------------SADAADLAELVARLKAHTDLPVA--VGFGISTPEQAAAIAAV-ADGVIVGSALVK 233 (258)
T ss_pred ------------------------cCCCccHHHHHHHHHhcCCCcEE--EEcccCCHHHHHHHHHh-CCEEEEcHHHHH
Confidence 011 2235688889988899998 58999999999999976 999999999996
No 92
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=99.38 E-value=1.9e-11 Score=112.99 Aligned_cols=172 Identities=23% Similarity=0.373 Sum_probs=132.5
Q ss_pred HHHHHHHHcCCCEEE----eCC--CCCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHh-----CCCEEE--EcCC--
Q 021609 105 VEAQILEAIGIDYVD----ESE--VLTPADEENHINKHNFR-IPFVCGCRNLGEALRRIRE-----GAAMIR--TKGE-- 168 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi----~~~--~~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~-----Gad~V~--v~g~-- 168 (310)
...+.+.++|++.|. ..+ .-....+.+.+...++. ++++.+|+|.+||.+.+++ |-++|+ +.+.
T Consensus 98 ~~~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~ 177 (326)
T PRK11840 98 ETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKKYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAK 177 (326)
T ss_pred HHHHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhcCCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCC
Confidence 344677889999994 112 11235777888765566 8999999999999987653 668887 4442
Q ss_pred CCCcchHHHHHHHHhhccc-eEeecccChhHHHHhh-hc-----cCC------------cHHHHHHHhhcCCCCEEEeCC
Q 021609 169 AGTGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTFA-KK-----IAA------------PYDLVMQTKQLGRLPVVHFAA 229 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~~-~~-----~~~------------~~~~i~~i~~~~~iPVi~iA~ 229 (310)
...+++.+++++.+++... +.+++++.+|....-. .+ .-| ..+.++.+.+..++||+ ..
T Consensus 178 ~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVi--vd 255 (326)
T PRK11840 178 TLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVL--VD 255 (326)
T ss_pred CcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHcCCCcEE--Ee
Confidence 3366788999999998777 8999999988775210 00 001 35677777777789998 57
Q ss_pred CCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCCh
Q 021609 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDP 278 (310)
Q Consensus 230 GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~ 278 (310)
+||++++|+.+++++|||||++.|++.+++||..+|+.|..+++.++..
T Consensus 256 AGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~aGr~a 304 (326)
T PRK11840 256 AGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEAGRLA 304 (326)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876543
No 93
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=99.37 E-value=2.3e-12 Score=116.94 Aligned_cols=180 Identities=22% Similarity=0.304 Sum_probs=121.9
Q ss_pred HHHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHH-hhcCcceeeccccC------cH
Q 021609 45 PEQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIK-QSVTIPVMAKARIG------HF 104 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~-~~~~iPv~vk~~~~------~~ 104 (310)
.+.++.+.++|+|.+ +|. |. |..+++. .|......++.+++++ +..++|+++....+ ..
T Consensus 27 ~~~~~~l~~~GaD~i-EiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e 105 (259)
T PF00290_consen 27 LEILKALEEAGADII-EIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIE 105 (259)
T ss_dssp HHHHHHHHHTTBSSE-EEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HH
T ss_pred HHHHHHHHHcCCCEE-EECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchH
Confidence 478899999999976 553 21 2222221 3555445567888898 67899999875543 34
Q ss_pred HHHHHHHHcCCCEEEeCCC--CCchhHHHHHHhcCCCCcEEEecCCHHHHHH-HHHhCCCEEEEcCCCC-CcchHHHHHH
Q 021609 105 VEAQILEAIGIDYVDESEV--LTPADEENHINKHNFRIPFVCGCRNLGEALR-RIREGAAMIRTKGEAG-TGNIIEAVRH 180 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~--~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~-~~~~Gad~V~v~g~~~-~~~~~~~~~~ 180 (310)
.+++.+.++|+|+++++|. .+..++.+.+++++..++.+++.+|.++..+ ..+....+|.+-...+ ||.-
T Consensus 106 ~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~------ 179 (259)
T PF00290_consen 106 RFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSR------ 179 (259)
T ss_dssp HHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTT------
T ss_pred HHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCc------
Confidence 6788999999999998885 2344666667677788888888877666555 4566667776543322 3320
Q ss_pred HHhhccceEeecccChhHHHHhhhccC-CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
. ... .-.+.++.+++..++|++ .+.||++++++.++. .|||||+|||+|++
T Consensus 180 ------------~-----------~~~~~l~~~i~~ik~~~~~Pv~--vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 180 ------------T-----------ELPDELKEFIKRIKKHTDLPVA--VGFGISTPEQAKKLA-AGADGVIVGSAFVK 231 (259)
T ss_dssp ------------S-----------SCHHHHHHHHHHHHHTTSS-EE--EESSS-SHHHHHHHH-TTSSEEEESHHHHH
T ss_pred ------------c-----------cchHHHHHHHHHHHhhcCcceE--EecCCCCHHHHHHHH-ccCCEEEECHHHHH
Confidence 0 000 114678888888899998 689999999999988 99999999999997
No 94
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.36 E-value=6.2e-11 Score=103.03 Aligned_cols=156 Identities=15% Similarity=0.218 Sum_probs=106.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcc-eeeccccCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIP-VMAKARIGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iP-v~vk~~~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++.+.++|++.+ ++ |.+. ....+.++.+++....- +.....+ ..++++.+.++|||+++.+..
T Consensus 28 ~~~~~~~~~Gv~~v-ql-------r~k~----~~~~e~~~~~~~~~~~~~~g~gtvl-~~d~~~~A~~~gAdgv~~p~~- 93 (187)
T PRK07455 28 QMAEAVAAGGMRLI-EI-------TWNS----DQPAELISQLREKLPECIIGTGTIL-TLEDLEEAIAAGAQFCFTPHV- 93 (187)
T ss_pred HHHHHHHHCCCCEE-EE-------eCCC----CCHHHHHHHHHHhCCCcEEeEEEEE-cHHHHHHHHHcCCCEEECCCC-
Confidence 46888889999976 76 3222 11145566665543321 1111221 238899999999999974442
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+..+..+.. ++..+++++|..|+.++.+.|+||++++.. ..
T Consensus 94 -~~~~~~~~~~~--~~~~i~G~~t~~e~~~A~~~Gadyv~~Fpt---~~------------------------------- 136 (187)
T PRK07455 94 -DPELIEAAVAQ--DIPIIPGALTPTEIVTAWQAGASCVKVFPV---QA------------------------------- 136 (187)
T ss_pred -CHHHHHHHHHc--CCCEEcCcCCHHHHHHHHHCCCCEEEECcC---Cc-------------------------------
Confidence 12333333333 345666799999999999999999998542 10
Q ss_pred ccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 205 KIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
....+.++.++... ++|++ +.||| +++++.+++++|+++|.++|+|++
T Consensus 137 --~~G~~~l~~~~~~~~~ipvv--aiGGI-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 137 --VGGADYIKSLQGPLGHIPLI--PTGGV-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred --ccCHHHHHHHHhhCCCCcEE--EeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence 11245677777655 69999 56999 799999999999999999999996
No 95
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.35 E-value=6.2e-11 Score=102.53 Aligned_cols=176 Identities=24% Similarity=0.294 Sum_probs=117.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHh---hcCcceeeccccCcHHHHHHHHHcCCCEEEeCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQ---SVTIPVMAKARIGHFVEAQILEAIGIDYVDESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~---~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~ 122 (310)
+..+.+.+.|++++ +++ ...++ ...+...++++++ .+++++++.. ..+.+.++|+|++....
T Consensus 16 ~~l~~l~~~g~~~i-~lr-------~~~~~-~~~~~~~~~~i~~~~~~~~~~l~~~~------~~~~a~~~g~~~vh~~~ 80 (196)
T cd00564 16 EVVEAALKGGVTLV-QLR-------EKDLS-ARELLELARALRELCRKYGVPLIIND------RVDLALAVGADGVHLGQ 80 (196)
T ss_pred HHHHHHHhcCCCEE-EEe-------CCCCC-HHHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCCEEecCc
Confidence 56778888899986 663 11111 1111234444443 3467777543 45678899999996443
Q ss_pred -CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHH
Q 021609 123 -VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 123 -~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~ 201 (310)
......+.+. ...+..+.++++|.+++.++.+.|+|++.+.....+. +...
T Consensus 81 ~~~~~~~~~~~---~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~----------------------~~~~--- 132 (196)
T cd00564 81 DDLPVAEARAL---LGPDLIIGVSTHSLEEALRAEELGADYVGFGPVFPTP----------------------TKPG--- 132 (196)
T ss_pred ccCCHHHHHHH---cCCCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCC----------------------CCCC---
Confidence 2222222222 3456788889999999999999999999875321111 1000
Q ss_pred hhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 202 FAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 202 ~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
......++.++++++..++|++ +.||| +.+++.+++.+|+|++++||+|++++||....+++.
T Consensus 133 --~~~~~~~~~~~~~~~~~~~pv~--a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~ 195 (196)
T cd00564 133 --AGPPLGLELLREIAELVEIPVV--AIGGI-TPENAAEVLAAGADGVAVISAITGADDPAAAARELL 195 (196)
T ss_pred --CCCCCCHHHHHHHHHhCCCCEE--EECCC-CHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHh
Confidence 0012336677777776789998 67999 589999999999999999999999999987776653
No 96
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.34 E-value=1.3e-11 Score=115.03 Aligned_cols=183 Identities=23% Similarity=0.332 Sum_probs=118.6
Q ss_pred HHHHHHHHcC-CcEEEecc-CCcccccccCCCCCCCCHH----HHHHHHhhcCcceeeccccCc---HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAG-ACAVMALE-RVPADIRSQGGVARMSDPQ----LIKEIKQSVTIPVMAKARIGH---FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~G-a~~i~~L~-~~~~~~~~~~G~~~~~~~~----~i~~i~~~~~iPv~vk~~~~~---~~~a~~~~~aGad 116 (310)
+.|+.++++| +|+| +|| .+|.. ..+|.....+++ .++.+++.+++||.+|...+. .+.++.+.++|+|
T Consensus 108 ~~a~~~~~aG~~D~i-ElN~~cP~~--~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d 184 (301)
T PRK07259 108 EVAEKLSKAPNVDAI-ELNISCPNV--KHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGAD 184 (301)
T ss_pred HHHHHHhccCCcCEE-EEECCCCCC--CCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCC
Confidence 4677888898 9987 887 44432 122444444444 555567778999999987542 2445677778888
Q ss_pred EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 117 YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
++...+... +.. .+..+. ...+.....+.++..
T Consensus 185 ~i~~~nt~~-----------g~~----~~~~~~----------~~~~~~~~gg~sg~~---------------------- 217 (301)
T PRK07259 185 GLSLINTLK-----------GMA----IDIKTR----------KPILANVTGGLSGPA---------------------- 217 (301)
T ss_pred EEEEEcccc-----------ccc----cccccC----------ceeecCCcCccCCcC----------------------
Confidence 774221100 000 000000 000000000011100
Q ss_pred hHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.....+++++++++.+++||+ +.|||.|++|+.+++.+|||+|++||+++. ||. ..+.+.+.+++|+
T Consensus 218 --------~~p~~l~~v~~i~~~~~ipvi--~~GGI~~~~da~~~l~aGAd~V~igr~ll~--~P~-~~~~i~~~l~~~~ 284 (301)
T PRK07259 218 --------IKPIALRMVYQVYQAVDIPII--GMGGISSAEDAIEFIMAGASAVQVGTANFY--DPY-AFPKIIEGLEAYL 284 (301)
T ss_pred --------cccccHHHHHHHHHhCCCCEE--EECCCCCHHHHHHHHHcCCCceeEcHHHhc--CcH-HHHHHHHHHHHHH
Confidence 012246778888887899998 789999999999999999999999999997 775 5566999999999
Q ss_pred Chhhhhhhhhhcccc
Q 021609 277 DPEVLAEVSCGLGEA 291 (310)
Q Consensus 277 ~~~~~~~~~~~~~~~ 291 (310)
+.+++.++++..|.+
T Consensus 285 ~~~g~~~i~~~~g~~ 299 (301)
T PRK07259 285 DKYGIKSIEEIVGIA 299 (301)
T ss_pred HHcCCCCHHHHhCcc
Confidence 999999999988854
No 97
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.33 E-value=1.7e-11 Score=117.19 Aligned_cols=196 Identities=20% Similarity=0.226 Sum_probs=125.1
Q ss_pred HHHHHHHHcCCcEEEecc-CCcccc-cccCCCCCCCCHHHHHHH----HhhcCcceeeccccCc---HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALE-RVPADI-RSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGH---FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~-~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~---~~~a~~~~~aGad 116 (310)
+.++.+++.|||+| +|| .+|... ....|.....+++.++++ ++.+++||++|+..+. .+.++.+.++|||
T Consensus 131 ~~a~~~e~~GaD~i-ELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gad 209 (385)
T PLN02495 131 EIIERVEETGVDAL-EINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCE 209 (385)
T ss_pred HHHHHHHhcCCCEE-EEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCC
Confidence 57888999999987 887 444322 122355556677877655 6667899999987642 3567888999999
Q ss_pred EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEE---cCCC-CCcchHHHHHHHHhhccceEeec
Q 021609 117 YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRT---KGEA-GTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v---~g~~-~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
+|+..+.+... ..++..+... ...+ ++.+ .+|. +++.+
T Consensus 210 gi~liNT~~~~--------------~~ID~~t~~p----------~~~~~~~~~~GGlSG~---alkpi----------- 251 (385)
T PLN02495 210 GVAAINTIMSV--------------MGINLDTLRP----------EPCVEGYSTPGGYSSK---AVRPI----------- 251 (385)
T ss_pred EEEEecccCcc--------------cccccccCcc----------ccccCCCCCCCCccch---hhhHH-----------
Confidence 99633321100 0001111000 0000 1111 1221 11110
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
.+...+++.+.+... .++|++ +.|||.|.+|+.+.+.+||+.|+|+|+++. .-| ...+++.+
T Consensus 252 ------------Al~~v~~i~~~~~~~~~~~ipIi--GvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~-~Gp-~vi~~i~~ 315 (385)
T PLN02495 252 ------------ALAKVMAIAKMMKSEFPEDRSLS--GIGGVETGGDAAEFILLGADTVQVCTGVMM-HGY-PLVKNLCA 315 (385)
T ss_pred ------------HHHHHHHHHHHHhhhccCCCcEE--EECCCCCHHHHHHHHHhCCCceeEeeeeee-cCc-HHHHHHHH
Confidence 000112223333211 158998 789999999999999999999999999997 235 46777999
Q ss_pred HHhccCChhhhhhhhhhcccchhccc
Q 021609 271 AVTHYSDPEVLAEVSCGLGEAMVGLN 296 (310)
Q Consensus 271 ~i~~~~~~~~~~~~~~~~~~~~~~~~ 296 (310)
.+++|++.+++.++++..|.+.+.+.
T Consensus 316 ~L~~~m~~~G~~si~e~~G~~~~~~~ 341 (385)
T PLN02495 316 ELQDFMKKHNFSSIEDFRGASLPYFT 341 (385)
T ss_pred HHHHHHHHcCCCCHHHHhCcCCcccC
Confidence 99999999999999999999987764
No 98
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.33 E-value=7.2e-11 Score=112.48 Aligned_cols=207 Identities=22% Similarity=0.316 Sum_probs=128.8
Q ss_pred eccCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEec------cCCccccccc-CCC-------------CCC
Q 021609 19 TKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMAL------ERVPADIRSQ-GGV-------------ARM 78 (310)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L------~~~~~~~~~~-~G~-------------~~~ 78 (310)
.....|.+..|++. +.+.++++++++.++.++|+.+++.. ++.+...... .+. ...
T Consensus 39 ~~~~~~~i~~Piv~----a~M~gVt~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P 114 (368)
T PRK08649 39 WQIDAYRFEIPIIA----SPMDAVVSPETAIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQELYAEP 114 (368)
T ss_pred eeecceeccCcEec----cCCcccCCHHHHHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCC
Confidence 44667888999998 77889999999999999999776552 1111110000 000 000
Q ss_pred CCHH----HHHHHHhhcCcceeecccc-CcHHHHHHHHHcCCCEEEeCC---------CC-CchhHHHHHHhcCCCCcEE
Q 021609 79 SDPQ----LIKEIKQSVTIPVMAKARI-GHFVEAQILEAIGIDYVDESE---------VL-TPADEENHINKHNFRIPFV 143 (310)
Q Consensus 79 ~~~~----~i~~i~~~~~iPv~vk~~~-~~~~~a~~~~~aGad~Vi~~~---------~~-~~~~~~~~i~~~~~~i~~~ 143 (310)
..++ .+++++++ ++++.++... ...+.++.+.++|+|.|..+. .. .+.++.+.+++ .+++++
T Consensus 115 ~~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~--~~ipVI 191 (368)
T PRK08649 115 IKPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE--LDVPVI 191 (368)
T ss_pred CCHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH--CCCCEE
Confidence 1122 23333432 3444333321 235778999999999996321 11 35556666554 467887
Q ss_pred E-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc-HHHHHHHhh---
Q 021609 144 C-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-YDLVMQTKQ--- 218 (310)
Q Consensus 144 v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~~i~~i~~--- 218 (310)
+ .+.|.++++.+.+.|+|.|.+. .+. +..+++ +... +.+.| ...+.+..+
T Consensus 192 aG~V~t~e~A~~l~~aGAD~V~VG-~G~-Gs~~~t-----------~~~~------------g~g~p~~~ai~~~~~a~~ 246 (368)
T PRK08649 192 VGGCVTYTTALHLMRTGAAGVLVG-IGP-GAACTS-----------RGVL------------GIGVPMATAIADVAAARR 246 (368)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEEC-CCC-CcCCCC-----------cccC------------CCCcCHHHHHHHHHHHHH
Confidence 7 6999999999999999999874 332 111100 0000 11112 222222221
Q ss_pred -----c--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 219 -----L--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 219 -----~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
. .++||| |+|||+++.|+.+++.+|||+|++|+.|+.++
T Consensus 247 ~~l~~~~~~~vpVI--AdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~ 292 (368)
T PRK08649 247 DYLDETGGRYVHVI--ADGGIGTSGDIAKAIACGADAVMLGSPLARAA 292 (368)
T ss_pred HhhhhhcCCCCeEE--EeCCCCCHHHHHHHHHcCCCeecccchhcccc
Confidence 1 158998 89999999999999999999999999999843
No 99
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=99.33 E-value=1.2e-10 Score=102.41 Aligned_cols=180 Identities=16% Similarity=0.215 Sum_probs=111.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCC---CCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEeC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGV---ARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~---~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~~ 121 (310)
+.++.+.++|++++ +++ ...+. .....++.++++++.++.|+.+..... ..+.++.+.++|+|+|+.+
T Consensus 16 ~~~~~~~~~G~~~i-~l~-------~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh 87 (211)
T cd00429 16 EELKRLEEAGADWI-HID-------VMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFH 87 (211)
T ss_pred HHHHHHHHcCCCEE-EEe-------cccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEC
Confidence 67888999999987 663 00110 001125788888876656665544433 2356788889999998644
Q ss_pred CCC--CchhHHHHHHhcCCCCcEEEecC--CHHHHHHHHHhCCCEEEEcCC--CCCcchHHHHHHHHhhccceEeecccC
Q 021609 122 EVL--TPADEENHINKHNFRIPFVCGCR--NLGEALRRIREGAAMIRTKGE--AGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 122 ~~~--~~~~~~~~i~~~~~~i~~~v~~~--t~~ea~~~~~~Gad~V~v~g~--~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
... ...+..+.+++ .++.++.+++ +..+..+....++|++.+.+. +.++. ..
T Consensus 88 ~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~-------------------~~- 145 (211)
T cd00429 88 AEATDHLHRTIQLIKE--LGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQ-------------------KF- 145 (211)
T ss_pred ccchhhHHHHHHHHHH--CCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCc-------------------cc-
Confidence 432 22333344433 4555555543 344444444455898865432 11111 00
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhcC-----CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
.....+.++++++.. ++|++ +.|||+ ++++.++.+.|+|++++||+|++++||...++++
T Consensus 146 ----------~~~~~~~i~~~~~~~~~~~~~~pi~--v~GGI~-~env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 146 ----------IPEVLEKIRKLRELIPENNLNLLIE--VDGGIN-LETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred ----------CHHHHHHHHHHHHHHHhcCCCeEEE--EECCCC-HHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 011133344444332 47987 569995 7999999999999999999999999998887765
No 100
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.32 E-value=1.6e-10 Score=101.72 Aligned_cols=155 Identities=23% Similarity=0.240 Sum_probs=103.1
Q ss_pred HHHHHHHHhhc-Ccceeecccc-Cc-HHHHHHHHHcCCCEEEeCCCCC---chhHHHHHHhcCCCCcEEEec---CC-HH
Q 021609 81 PQLIKEIKQSV-TIPVMAKARI-GH-FVEAQILEAIGIDYVDESEVLT---PADEENHINKHNFRIPFVCGC---RN-LG 150 (310)
Q Consensus 81 ~~~i~~i~~~~-~iPv~vk~~~-~~-~~~a~~~~~aGad~Vi~~~~~~---~~~~~~~i~~~~~~i~~~v~~---~t-~~ 150 (310)
++.++++++.+ +.++.+...+ +. ...++.+.++|||.+..+...+ +.++.+.+++ .++.+++++ .+ .+
T Consensus 40 ~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~--~g~~~~~~~~~~~t~~~ 117 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKK--HGKEVQVDLINVKDKVK 117 (206)
T ss_pred HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHH--cCCEEEEEecCCCChHH
Confidence 67888888774 5556654322 21 1357889999999996332222 3455556554 467776654 33 36
Q ss_pred HHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC-CCEEEeCC
Q 021609 151 EALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR-LPVVHFAA 229 (310)
Q Consensus 151 ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~-iPVi~iA~ 229 (310)
++..+.+.|+|+|.+++ ++.+. .......+.++++++..+ .++. +.
T Consensus 118 ~~~~~~~~g~d~v~~~p-g~~~~------------------------------~~~~~~~~~i~~l~~~~~~~~i~--v~ 164 (206)
T TIGR03128 118 RAKELKELGADYIGVHT-GLDEQ------------------------------AKGQNPFEDLQTILKLVKEARVA--VA 164 (206)
T ss_pred HHHHHHHcCCCEEEEcC-CcCcc------------------------------cCCCCCHHHHHHHHHhcCCCcEE--EE
Confidence 77778888999999863 22111 001123445555555433 4444 36
Q ss_pred CCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 230 GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
||| +++++.+++++|+|++++||+|++++||...++.+++.
T Consensus 165 GGI-~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 165 GGI-NLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 999 79999999999999999999999999998888877643
No 101
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.30 E-value=1.6e-10 Score=107.62 Aligned_cols=198 Identities=19% Similarity=0.169 Sum_probs=124.4
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-c----HHHHHHHHHcCCCEEE
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-H----FVEAQILEAIGIDYVD 119 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~----~~~a~~~~~aGad~Vi 119 (310)
..+|+.+.+.|+...+.- .. ...++.+++. ...|+.+++... . .+.++.+.+.|++.+.
T Consensus 84 ~~la~aa~~~g~~~~~~~---------~~----~~~~~~i~~~---~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~ 147 (299)
T cd02809 84 LATARAAAAAGIPFTLST---------VS----TTSLEEVAAA---APGPRWFQLYVPRDREITEDLLRRAEAAGYKALV 147 (299)
T ss_pred HHHHHHHHHcCCCEEecC---------CC----cCCHHHHHHh---cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEE
Confidence 367888899998754221 00 1124544433 346888876543 2 2345666789999996
Q ss_pred eCCCCCc------hhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 120 ESEVLTP------ADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 120 ~~~~~~~------~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
.+-+.+. .+..+.+++. .++++++- +.+.++++++.+.|+|.|.++++++...
T Consensus 148 l~~~~p~~~~~~~~~~i~~l~~~-~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~------------------- 207 (299)
T cd02809 148 LTVDTPVLGRRLTWDDLAWLRSQ-WKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQL------------------- 207 (299)
T ss_pred EecCCCCCCCCCCHHHHHHHHHh-cCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCCC-------------------
Confidence 3332222 2444555442 34565554 7899999999999999999987653210
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
+ ...++++.+.++++.. ++||+ ++|||+++.|+.+++.+|||+|++|++++.+. ...=.+
T Consensus 208 ~-----------~g~~~~~~l~~i~~~~~~~ipvi--a~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~-----~~~g~~ 269 (299)
T cd02809 208 D-----------GAPATIDALPEIVAAVGGRIEVL--LDGGIRRGTDVLKALALGADAVLIGRPFLYGL-----AAGGEA 269 (299)
T ss_pred C-----------CCcCHHHHHHHHHHHhcCCCeEE--EeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHH-----HhcCHH
Confidence 0 1234467777776644 59998 89999999999999999999999999777411 000000
Q ss_pred HHhccCChhhhhhhhhhcccchhcccCccch
Q 021609 271 AVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 271 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (310)
.+ .+.+..+.+.+...|..+|.+.++
T Consensus 270 ~v-----~~~i~~l~~el~~~m~~~G~~~i~ 295 (299)
T cd02809 270 GV-----AHVLEILRDELERAMALLGCASLA 295 (299)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHCCCCHH
Confidence 00 223445666666667666665543
No 102
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.30 E-value=1.2e-11 Score=116.58 Aligned_cols=195 Identities=22% Similarity=0.274 Sum_probs=105.0
Q ss_pred ceeEEEeeCCce-eeeec-cCcceeecchhhhhhCcc-cccC---C----CHHH-HHHHHHcCCcEE-EeccCCcccccc
Q 021609 4 TGVVAVYGNDGA-ITETK-KSPFSVKVGLAQMLRGGV-IMDV---V----TPEQ-ARVAEEAGACAV-MALERVPADIRS 71 (310)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~-i~~~---~----~~~~-A~~~~~~Ga~~i-~~L~~~~~~~~~ 71 (310)
+|++...||.++ +.+++ ...|...+.... .+. +.++ + +++. .+.....+|+++ +.+|+.......
T Consensus 81 ~g~~~~~Gs~~~~~~~~e~~~~~~~vr~~~~---~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~ 157 (326)
T cd02811 81 LGIAMGVGSQRAALEDPELAESFTVVREAPP---NGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQP 157 (326)
T ss_pred cCCCeEecCchhhccChhhhhHHHHHHHhCC---CceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCC
Confidence 577788898876 55555 455554333222 111 1111 1 4444 444455788887 566632222121
Q ss_pred cCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHH
Q 021609 72 QGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGE 151 (310)
Q Consensus 72 ~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~e 151 (310)
.+...+....+.++.+++.+++||++|.... ..+.++
T Consensus 158 ~~~~df~~~~~~i~~l~~~~~vPVivK~~g~-------------------------------------------g~s~~~ 194 (326)
T cd02811 158 EGDRDFRGWLERIEELVKALSVPVIVKEVGF-------------------------------------------GISRET 194 (326)
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEEecCC-------------------------------------------CCCHHH
Confidence 1111111123678888888999999986421 012344
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhcC-CCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQLG-RLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~-~iPVi~iA~ 229 (310)
++++.+.|+|.|.++|.+++... ..+.+|...........+ .+. .+....+.++++.. ++||+ ++
T Consensus 195 a~~l~~~Gvd~I~vsG~GGt~~~--~ie~~r~~~~~~~~~~~~---------~~~g~~t~~~l~~~~~~~~~ipIi--as 261 (326)
T cd02811 195 AKRLADAGVKAIDVAGAGGTSWA--RVENYRAKDSDQRLAEYF---------ADWGIPTAASLLEVRSALPDLPLI--AS 261 (326)
T ss_pred HHHHHHcCCCEEEECCCCCCccc--cccccccccccccccccc---------ccccccHHHHHHHHHHHcCCCcEE--EE
Confidence 55555566666666554332210 011111000000000000 011 12244555565544 79998 89
Q ss_pred CCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 230 GGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 230 GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
|||+++.|+.+++.+|||+|.+|+++++
T Consensus 262 GGIr~~~dv~kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 262 GGIRNGLDIAKALALGADLVGMAGPFLK 289 (326)
T ss_pred CCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence 9999999999999999999999999886
No 103
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=99.30 E-value=3e-10 Score=99.09 Aligned_cols=162 Identities=18% Similarity=0.270 Sum_probs=114.1
Q ss_pred HHHHHHHHhhc-CcceeeccccCc--HHHHHHHHHcCCCEEEeCCCCCchhHHHHHHh-cCCCCcEEE---ecCCHHHHH
Q 021609 81 PQLIKEIKQSV-TIPVMAKARIGH--FVEAQILEAIGIDYVDESEVLTPADEENHINK-HNFRIPFVC---GCRNLGEAL 153 (310)
Q Consensus 81 ~~~i~~i~~~~-~iPv~vk~~~~~--~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~-~~~~i~~~v---~~~t~~ea~ 153 (310)
.+.++++|+.+ +.++++....-+ ...++.+.++|||.+......+...+...++. +.++..+.+ ...|++++.
T Consensus 44 ~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~ 123 (217)
T COG0269 44 MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRA 123 (217)
T ss_pred HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHH
Confidence 57888998875 677777665432 35789999999999964333334444444433 334544444 467788877
Q ss_pred HHHH-hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC--CCEEEeCCC
Q 021609 154 RRIR-EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR--LPVVHFAAG 230 (310)
Q Consensus 154 ~~~~-~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~--iPVi~iA~G 230 (310)
+-.+ +|+|++.+|-.. + .. +.+....++.+..+++..+ .++. ..|
T Consensus 124 ~~l~~~gvd~~~~H~g~---D-----------------~q----------~~G~~~~~~~l~~ik~~~~~g~~vA--VaG 171 (217)
T COG0269 124 KWLKELGVDQVILHRGR---D-----------------AQ----------AAGKSWGEDDLEKIKKLSDLGAKVA--VAG 171 (217)
T ss_pred HHHHHhCCCEEEEEecc---c-----------------Hh----------hcCCCccHHHHHHHHHhhccCceEE--Eec
Confidence 7665 999999998421 1 00 0122333556666666544 4665 479
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 231 GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
|| +++++..+...|++.++|||+|+++.||...++.|.+.++.+
T Consensus 172 GI-~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~~~ 215 (217)
T COG0269 172 GI-TPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEIDKI 215 (217)
T ss_pred CC-CHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHhcc
Confidence 99 799999999999999999999999999999999999988643
No 104
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.30 E-value=3e-10 Score=102.81 Aligned_cols=174 Identities=16% Similarity=0.142 Sum_probs=109.8
Q ss_pred HHHHHHHHcCCcEEEecc-CCcccccccCCCCC----C-----CCHHHHHHHHhhcCcceeecccc-----CcHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALE-RVPADIRSQGGVAR----M-----SDPQLIKEIKQSVTIPVMAKARI-----GHFVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~----~-----~~~~~i~~i~~~~~iPv~vk~~~-----~~~~~a~~~ 110 (310)
+.++.++++ ++.+ +|| |.+..... | ... . ..++.++++++.+++|+.+.... +....++.+
T Consensus 22 ~~~~~l~~~-ad~i-Elgip~sdp~ad-G-~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~ 97 (244)
T PRK13125 22 EFIIGLVEL-VDIL-ELGIPPKYPKYD-G-PVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMA 97 (244)
T ss_pred HHHHHHHhh-CCEE-EECCCCCCCCCC-C-HHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHH
Confidence 567778787 9976 887 43321111 1 000 0 01468888888889998643211 334567899
Q ss_pred HHcCCCEEEeCCC-C----CchhHHHHHHhcCCCCcEEEecCC-HHHHHHHHHhCCCEE--EEcCCCCCcchHHHHHHHH
Q 021609 111 EAIGIDYVDESEV-L----TPADEENHINKHNFRIPFVCGCRN-LGEALRRIREGAAMI--RTKGEAGTGNIIEAVRHVR 182 (310)
Q Consensus 111 ~~aGad~Vi~~~~-~----~~~~~~~~i~~~~~~i~~~v~~~t-~~ea~~~~~~Gad~V--~v~g~~~~~~~~~~~~~~r 182 (310)
.++|+|+++.++. . ...++.+.+++++....+.+..+| .++.....+....++ ++++..++ .+
T Consensus 98 ~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~-~~-------- 168 (244)
T PRK13125 98 RDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGV-PL-------- 168 (244)
T ss_pred HHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCC-Cc--------
Confidence 9999999987653 2 233455566655555555556555 455555666555554 45443321 10
Q ss_pred hhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.....+.++++++.. +.|++ ..|||++++++.+++++|||++++||+|++
T Consensus 169 -----------------------~~~~~~~i~~lr~~~~~~~i~--v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 169 -----------------------PVSVERNIKRVRNLVGNKYLV--VGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred -----------------------hHHHHHHHHHHHHhcCCCCEE--EeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 011133556666654 47887 689999999999999999999999999997
No 105
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.30 E-value=1.1e-10 Score=112.28 Aligned_cols=190 Identities=19% Similarity=0.188 Sum_probs=121.3
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh-c-Ccceeecc
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS-V-TIPVMAKA 99 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~-~-~iPv~vk~ 99 (310)
..|+|++|+++ +++...+++++++.++.++|.-+++.. ++.......+.|+++++. + +.|+.++.
T Consensus 8 ~~lgiryPii~---gpMa~Giss~eLVaAvs~AGgLG~lga----------g~l~~e~l~~~I~~ir~~lt~~~PfGVNL 74 (418)
T cd04742 8 EDYGLRYAYVA---GAMARGIASAELVVAMGKAGMLGFFGA----------GGLPLDEVEQAIERIQAALGNGEPYGVNL 74 (418)
T ss_pred HHhCCCccEEC---CcccCCCCCHHHHHHHHhCCCeeeecC----------CCCCHHHHHHHHHHHHHhccCCCCeEEee
Confidence 46899999999 555447999999999999998776332 111111113466667775 4 78999987
Q ss_pred ccCc------HHHHHHHHHcCCCEEEeCCC--CCchhHHHHHHhcCCC----------CcEEEecC--------------
Q 021609 100 RIGH------FVEAQILEAIGIDYVDESEV--LTPADEENHINKHNFR----------IPFVCGCR-------------- 147 (310)
Q Consensus 100 ~~~~------~~~a~~~~~aGad~Vi~~~~--~~~~~~~~~i~~~~~~----------i~~~v~~~-------------- 147 (310)
.... .+.++.+.+.|+..|..+.- .++. +. ..+..+.. ..++..+.
T Consensus 75 ~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~-~~-~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~ 152 (418)
T cd04742 75 IHSPDEPELEEGLVDLFLRHGVRVVEASAFMQLTPA-LV-RYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPE 152 (418)
T ss_pred ecCCCCchhHHHHHHHHHHcCCCEEEeccccCCCcc-hh-hHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCH
Confidence 6421 23467888999998864431 2221 11 22222110 11333322
Q ss_pred ------------CHHHHHHHHHhC-CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc---HH
Q 021609 148 ------------NLGEALRRIREG-AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP---YD 211 (310)
Q Consensus 148 ------------t~~ea~~~~~~G-ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~---~~ 211 (310)
|.+||..+.+.| +|.|.+. ...+||.- ..+. +.
T Consensus 153 ~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g------------------------------~~~~~~Llp 201 (418)
T cd04742 153 RILKKLLAEGKITEEQAELARRVPVADDITVE-ADSGGHTD------------------------------NRPLSVLLP 201 (418)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc-ccCCCCCC------------------------------CccHHhHHH
Confidence 678888888888 5999887 43344410 0111 12
Q ss_pred HHHHHhhcC--------CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 212 LVMQTKQLG--------RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 212 ~i~~i~~~~--------~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.+..+++.. ++||+ |+|||.|++++..++.+|||+|++||.+.-+.
T Consensus 202 ~v~~l~d~v~~~~~~~~~ipVi--AAGGI~tg~~vaAA~alGAd~V~~GT~flat~ 255 (418)
T cd04742 202 TIIRLRDELAARYGYRRPIRVG--AAGGIGTPEAAAAAFALGADFIVTGSINQCTV 255 (418)
T ss_pred HHHHHHHHHhhccccCCCceEE--EECCCCCHHHHHHHHHcCCcEEeeccHHHhCc
Confidence 222222222 58998 88999999999999999999999999999754
No 106
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=99.29 E-value=2.8e-10 Score=101.34 Aligned_cols=189 Identities=15% Similarity=0.145 Sum_probs=121.8
Q ss_pred HHHHHHHHcCCcEE-Eec-cCCcccccccCCCCCCCCHHHHHHHHhh-cCcceeeccccC-cHHHHHHHHHcCCCEEEe-
Q 021609 46 EQARVAEEAGACAV-MAL-ERVPADIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKARIG-HFVEAQILEAIGIDYVDE- 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~- 120 (310)
+..++++++|++++ +|+ +.....--.++ ++.++.+++. +++|+-+.+-.. ....++.+.++|+|.+..
T Consensus 16 ~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg-------~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H 88 (220)
T PRK08883 16 EDVEKVLAAGADVVHFDVMDNHYVPNLTFG-------APICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFH 88 (220)
T ss_pred HHHHHHHHcCCCEEEEecccCcccCccccC-------HHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEc
Confidence 67888899999998 443 11111111233 7899999987 689988876543 456678899999999952
Q ss_pred CCC-CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcC--CCCCcchHHHHHHHHhhccceEeecccChh
Q 021609 121 SEV-LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRNMDDD 197 (310)
Q Consensus 121 ~~~-~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d 197 (310)
... ..+....+.+++.+...-+.....|..+...-.-.-+|+|.+.+ ++++|- ..
T Consensus 89 ~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq---------------~f------- 146 (220)
T PRK08883 89 VEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQ---------------SF------- 146 (220)
T ss_pred ccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCc---------------ee-------
Confidence 222 23456667776655544445555565554443333456654332 222220 00
Q ss_pred HHHHhhhccCCcHHHHHHHhhcC-----CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 198 EVFTFAKKIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.....+.++++++.. ++|+. +.||| +.+++.++.++|||++++||+|++++||...++++++.+
T Consensus 147 --------i~~~lekI~~l~~~~~~~~~~~~I~--vdGGI-~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~ 215 (220)
T PRK08883 147 --------IPHTLDKLRAVRKMIDESGRDIRLE--IDGGV-KVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAEL 215 (220)
T ss_pred --------cHhHHHHHHHHHHHHHhcCCCeeEE--EECCC-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 111233444444432 47887 45999 599999999999999999999999999999988888766
Q ss_pred hc
Q 021609 273 TH 274 (310)
Q Consensus 273 ~~ 274 (310)
++
T Consensus 216 ~~ 217 (220)
T PRK08883 216 AK 217 (220)
T ss_pred Hh
Confidence 53
No 107
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=99.29 E-value=7.6e-11 Score=106.57 Aligned_cols=180 Identities=21% Similarity=0.256 Sum_probs=116.9
Q ss_pred HHHHHHHHcCCcEEEecc-CC-------ccccccc-----CCCCCCCCHHHHHHHHhhcCcceeeccccC------cHHH
Q 021609 46 EQARVAEEAGACAVMALE-RV-------PADIRSQ-----GGVARMSDPQLIKEIKQSVTIPVMAKARIG------HFVE 106 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~-------~~~~~~~-----~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~------~~~~ 106 (310)
+.++.++++|+|++ +++ |. +...+.. .|.+....++.++++++.+++|+.+....+ ....
T Consensus 18 ~~~~~l~~~Gad~i-el~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~f 96 (242)
T cd04724 18 EILKALVEAGADII-ELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLERF 96 (242)
T ss_pred HHHHHHHHCCCCEE-EECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHH
Confidence 67889999999987 665 21 1111110 133323447888899988899987744433 2566
Q ss_pred HHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCCHHH-HHHHHHhCCCEEEEcCC-CCCcchHHHHHHHH
Q 021609 107 AQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRNLGE-ALRRIREGAAMIRTKGE-AGTGNIIEAVRHVR 182 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~e-a~~~~~~Gad~V~v~g~-~~~~~~~~~~~~~r 182 (310)
++.+.++|+|+++.++.- +..++.+.+++++.....++..+|..+ .+...+...++|.+.+. +.+|.-
T Consensus 97 i~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~-------- 168 (242)
T cd04724 97 LRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGAR-------- 168 (242)
T ss_pred HHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCc--------
Confidence 899999999999876641 223445555556666556666666544 44455545555443221 112210
Q ss_pred hhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+ . ......+.++++++..++|++ ..|||++++++.++.++ ||+++|||+|++
T Consensus 169 ----------~-~---------~~~~~~~~i~~lr~~~~~pI~--vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 169 ----------T-E---------LPDDLKELIKRIRKYTDLPIA--VGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred ----------c-C---------CChhHHHHHHHHHhcCCCcEE--EEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 0 0 012235678888887789998 58999999999999999 999999999996
No 108
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.28 E-value=4.8e-11 Score=112.71 Aligned_cols=159 Identities=24% Similarity=0.319 Sum_probs=104.5
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHH----HHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKE----IKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~----i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.++|+|+| +|| |.++..+...|+.++.+++.+.+ +++++++||.+|.+++..+.
T Consensus 81 ~aA~~~~~~g~d~I-dlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~------------ 147 (333)
T PRK11815 81 EAAKLAEDWGYDEI-NLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQ------------ 147 (333)
T ss_pred HHHHHHHhcCCCEE-EEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCC------------
Confidence 45777788999987 888 55554444447777777765554 56667999999998763110
Q ss_pred EeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCC--CcchHHHHHHHHhhccceEeecccCh
Q 021609 119 DESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAG--TGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~--~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
.+..+.. +-+..+.+.|++.+.+|++.. ++. . ..
T Consensus 148 -----~t~~~~~-------------------~~~~~l~~aG~d~i~vh~Rt~~~~g~------------------~--~~ 183 (333)
T PRK11815 148 -----DSYEFLC-------------------DFVDTVAEAGCDTFIVHARKAWLKGL------------------S--PK 183 (333)
T ss_pred -----cCHHHHH-------------------HHHHHHHHhCCCEEEEcCCchhhcCC------------------C--cc
Confidence 0001111 123445678999999987642 110 0 00
Q ss_pred hHHHHhhhc-cCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 197 DEVFTFAKK-IAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 197 d~~~~~~~~-~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.. .. ....++.++++++.. ++||+ ++|||.|++|+.++++ |||+|++|++++. ||+...+ +.+.+
T Consensus 184 ~~-----~~~~~~~~~~i~~v~~~~~~iPVI--~nGgI~s~eda~~~l~-~aDgVmIGRa~l~--nP~~~~~-~~~~~ 250 (333)
T PRK11815 184 EN-----REIPPLDYDRVYRLKRDFPHLTIE--INGGIKTLEEAKEHLQ-HVDGVMIGRAAYH--NPYLLAE-VDREL 250 (333)
T ss_pred cc-----ccCCCcCHHHHHHHHHhCCCCeEE--EECCcCCHHHHHHHHh-cCCEEEEcHHHHh--CCHHHHH-HHHHh
Confidence 00 00 123478888888764 89998 7899999999999886 7999999999997 8874443 44433
No 109
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.28 E-value=7e-11 Score=110.04 Aligned_cols=163 Identities=26% Similarity=0.298 Sum_probs=101.0
Q ss_pred HHHHHHHHcCCcEEEecc-CCccc-ccccCCCCCCCCHHHHHH----HHhhcCcceeeccccCc---HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALE-RVPAD-IRSQGGVARMSDPQLIKE----IKQSVTIPVMAKARIGH---FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~-~~~~~G~~~~~~~~~i~~----i~~~~~iPv~vk~~~~~---~~~a~~~~~aGad 116 (310)
+.|+.+++.|+++| +|| .+|.. .+...|+..+.+++.+.+ +++.+++||++|.+.+. .+.++.+.++|+|
T Consensus 117 ~~a~~~~~~gad~i-elN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gad 195 (299)
T cd02940 117 ELAKLVEEAGADAL-ELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGAD 195 (299)
T ss_pred HHHHHHHhcCCCEE-EEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCC
Confidence 45777777899987 887 44432 223345666666665554 45667899999988642 3567888889999
Q ss_pred EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 117 YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
+|+..+..... ..++..+. .....+|+++..+.. . .+
T Consensus 196 gi~~~Nt~~~~--------------~~id~~~~----------~~~~~~~~~~~~gg~-----------------s--G~ 232 (299)
T cd02940 196 GVSAINTVNSL--------------MGVDLDGT----------PPAPGVEGKTTYGGY-----------------S--GP 232 (299)
T ss_pred EEEEecccccc--------------cccccccC----------CccccccCCCCcCcc-----------------c--CC
Confidence 98633321000 00000000 001112332111100 0 00
Q ss_pred hHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
......++.+.++++.. ++||+ ++|||.+.+|+.+++.+|||+|++||+++.. .|.
T Consensus 233 -------a~~p~~l~~v~~~~~~~~~~ipIi--g~GGI~~~~da~~~l~aGA~~V~i~ta~~~~-g~~ 290 (299)
T cd02940 233 -------AVKPIALRAVSQIARAPEPGLPIS--GIGGIESWEDAAEFLLLGASVVQVCTAVMNQ-GFT 290 (299)
T ss_pred -------CcchHHHHHHHHHHHhcCCCCcEE--EECCCCCHHHHHHHHHcCCChheEceeeccc-CCc
Confidence 00112367888888877 89998 8899999999999999999999999999983 554
No 110
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=99.28 E-value=3.6e-10 Score=100.22 Aligned_cols=187 Identities=14% Similarity=0.131 Sum_probs=110.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++.+.++|+++| +++-... .+. .+....++.++++++.+..|+.+..... ..+.++.+.++|+|++..+...
T Consensus 20 ~~~~~~~~~G~~~i-~l~~~d~---~~~-~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~~ 94 (220)
T PRK05581 20 EEVKAVEAAGADWI-HVDVMDG---HFV-PNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFHVEA 94 (220)
T ss_pred HHHHHHHHcCCCEE-EEeCccC---CcC-CCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEeecc
Confidence 68889999999987 6631000 000 0001136788888876654543433332 2345677789999997544322
Q ss_pred --CchhHHHHHHhcCCCCcEEEec--CCHHHHHHHHHhCCCEEEEcCC--CCCcchHHHHHHHHhhccceEeecccChhH
Q 021609 125 --TPADEENHINKHNFRIPFVCGC--RNLGEALRRIREGAAMIRTKGE--AGTGNIIEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 125 --~~~~~~~~i~~~~~~i~~~v~~--~t~~ea~~~~~~Gad~V~v~g~--~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~ 198 (310)
.+.+..+.++. .++.+++.+ +|..+..+....++|++.+.+. +.++. ..
T Consensus 95 ~~~~~~~~~~~~~--~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~-------------------~~---- 149 (220)
T PRK05581 95 SEHIHRLLQLIKS--AGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQ-------------------KF---- 149 (220)
T ss_pred chhHHHHHHHHHH--cCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcc-------------------cc----
Confidence 22333344433 455555554 4555555555556888765432 22221 00
Q ss_pred HHHhhhccCCcHHHHHHHhhcC---CCC--EEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 199 VFTFAKKIAAPYDLVMQTKQLG---RLP--VVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 199 ~~~~~~~~~~~~~~i~~i~~~~---~iP--Vi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.....+.++++++.. ++| +. +.||| +++++.++.+.|+|+|++||+|++++||...+++|.+.+
T Consensus 150 -------~~~~~~~i~~~~~~~~~~~~~~~i~--v~GGI-~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~~ 218 (220)
T PRK05581 150 -------IPEVLEKIRELRKLIDERGLDILIE--VDGGI-NADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAEL 218 (220)
T ss_pred -------cHHHHHHHHHHHHHHHhcCCCceEE--EECCC-CHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHh
Confidence 011123333333321 222 43 46999 579999999999999999999999999999988887653
No 111
>PRK08999 hypothetical protein; Provisional
Probab=99.27 E-value=1.1e-10 Score=109.16 Aligned_cols=162 Identities=16% Similarity=0.146 Sum_probs=110.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~ 122 (310)
+.+.++.++|++++ +| |.+.-+. +....+.++++++.+++++++++. ++.+.+.|+|+|. ...
T Consensus 148 ~~~~~~l~~g~~~v-ql-------R~k~~~~~~~~~~~~~l~~~~~~~~~~liind~------~~la~~~~~~GvHl~~~ 213 (312)
T PRK08999 148 ARLERALAAGIRLI-QL-------RAPQLPPAAYRALARAALGLCRRAGAQLLLNGD------PELAEDLGADGVHLTSA 213 (312)
T ss_pred HHHHHHHHCCCcEE-EE-------eCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECc------HHHHHhcCCCEEEcChh
Confidence 34566678898876 76 2221110 111133444555667899998764 4578889999996 444
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHh
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~ 202 (310)
++...+.++ .+.+..++++|||.+++.++.+.|+||+.+..- ++|.++.+
T Consensus 214 d~~~~~~r~----~~~~~~ig~S~h~~~~~~~a~~~~~dyi~~gpv----------------------f~t~tk~~---- 263 (312)
T PRK08999 214 QLAALAARP----LPAGRWVAASCHDAEELARAQRLGVDFAVLSPV----------------------QPTASHPG---- 263 (312)
T ss_pred hcChHhhcc----CCCCCEEEEecCCHHHHHHHHhcCCCEEEECCC----------------------cCCCCCCC----
Confidence 444333321 345688999999999999999999999987542 22222210
Q ss_pred hhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 203 AKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 203 ~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
.....++.++++++..++||+++ ||| +++++.+++++|++||.+-|+|.
T Consensus 264 --~~~~g~~~~~~~~~~~~~Pv~Ai--GGI-~~~~~~~~~~~g~~gva~i~~~~ 312 (312)
T PRK08999 264 --AAPLGWEGFAALIAGVPLPVYAL--GGL-GPGDLEEAREHGAQGIAGIRGLW 312 (312)
T ss_pred --CCCCCHHHHHHHHHhCCCCEEEE--CCC-CHHHHHHHHHhCCCEEEEEEEeC
Confidence 01223667777887788999955 999 79999999999999999998874
No 112
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.27 E-value=2.6e-11 Score=114.52 Aligned_cols=192 Identities=21% Similarity=0.245 Sum_probs=106.3
Q ss_pred ceeEEEeeCCce-eeeec-cCcceeecchhhhhhCcccccCC-------CHH-HHHHHHHcCCcEE-EeccCCccccccc
Q 021609 4 TGVVAVYGNDGA-ITETK-KSPFSVKVGLAQMLRGGVIMDVV-------TPE-QARVAEEAGACAV-MALERVPADIRSQ 72 (310)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~i~~~~-------~~~-~A~~~~~~Ga~~i-~~L~~~~~~~~~~ 72 (310)
+|+...+||.++ +.+++ .+.|...+.... ...++.++. +++ ..++....+|+++ +.+|+.++.....
T Consensus 82 ~g~~~~~Gs~~~~~~~~~~~~~~~~vr~~~~--~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~ 159 (333)
T TIGR02151 82 LGIPMGVGSQRAALKDPETADTFEVVREEAP--NGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPE 159 (333)
T ss_pred cCCCeEEcCchhhccChhhHhHHHHHHHhCC--CCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCC
Confidence 578889999886 66666 555543333222 122233221 132 3444455667766 4666322222222
Q ss_pred CCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHH
Q 021609 73 GGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEA 152 (310)
Q Consensus 73 ~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea 152 (310)
+...+....+.++.+++.+++||++|..... .+.+.+
T Consensus 160 g~~~f~~~le~i~~i~~~~~vPVivK~~g~g-------------------------------------------~~~~~a 196 (333)
T TIGR02151 160 GDRNFKGWLEKIAEICSQLSVPVIVKEVGFG-------------------------------------------ISKEVA 196 (333)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEEecCCC-------------------------------------------CCHHHH
Confidence 2111111237888899999999999964210 123445
Q ss_pred HHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEee--cccChhHHHHhhhcc-CCcHHHHHHHhh-cCCCCEEEeC
Q 021609 153 LRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVL--RNMDDDEVFTFAKKI-AAPYDLVMQTKQ-LGRLPVVHFA 228 (310)
Q Consensus 153 ~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l--~~~~~d~~~~~~~~~-~~~~~~i~~i~~-~~~iPVi~iA 228 (310)
+++.++|+|+|.++|++++... ..+..|.. +.. .++. +. .+..+.+.++++ ..++||+ +
T Consensus 197 ~~L~~aGvd~I~Vsg~gGt~~~--~ie~~r~~----~~~~~~~~~---------~~g~~t~~~l~~~~~~~~~ipVI--a 259 (333)
T TIGR02151 197 KLLADAGVSAIDVAGAGGTSWA--QVENYRAK----GSNLASFFN---------DWGIPTAASLLEVRSDAPDAPII--A 259 (333)
T ss_pred HHHHHcCCCEEEECCCCCCccc--chhhhccc----ccccchhhh---------cccHhHHHHHHHHHhcCCCCeEE--E
Confidence 5556666666666665433210 11111100 000 0000 11 112334555554 3579998 8
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 229 AGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 229 ~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+|||+++.|+.+++.+|||+|++|++++.
T Consensus 260 sGGI~~~~di~kaLalGAd~V~igr~~L~ 288 (333)
T TIGR02151 260 SGGLRTGLDVAKAIALGADAVGMARPFLK 288 (333)
T ss_pred ECCCCCHHHHHHHHHhCCCeehhhHHHHH
Confidence 99999999999999999999999999995
No 113
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.26 E-value=2.9e-10 Score=105.49 Aligned_cols=190 Identities=15% Similarity=0.131 Sum_probs=123.6
Q ss_pred cchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCcHH
Q 021609 28 VGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGHFV 105 (310)
Q Consensus 28 ~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~ 105 (310)
.|++. .-+..+++.++|..+.+.|.-.+++-+ +. .....+.+++++... .+.+.+.....+.+
T Consensus 47 iPii~----AnMdTV~~~~mA~~la~~g~~~~iHk~--------~~---~e~~~~fv~~~~~~~~~~~~vavG~~~~d~e 111 (346)
T PRK05096 47 VPIIA----ANMDTVGTFEMAKALASFDILTAVHKH--------YS---VEEWAAFVNNSSADVLKHVMVSTGTSDADFE 111 (346)
T ss_pred CceEe----cCCCccccHHHHHHHHHCCCeEEEecC--------CC---HHHHHHHHHhccccccceEEEEecCCHHHHH
Confidence 56666 457788999999999999877654421 11 000022333333222 22233333323467
Q ss_pred HHHHHHH--cCCCEEE--eCCCC--CchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 106 EAQILEA--IGIDYVD--ESEVL--TPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 106 ~a~~~~~--aGad~Vi--~~~~~--~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.++.+.+ +|+|.++ .++.- ...+.++.+++..+++.++++ +-|.+-++.++++|+|.|++.- +.|.+|++
T Consensus 112 r~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGI--GpGSiCtT- 188 (346)
T PRK05096 112 KTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGI--GPGSVCTT- 188 (346)
T ss_pred HHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcc--cCCccccC-
Confidence 7888887 5999995 45543 345667777776678888887 8899999999999999998752 22333321
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCc-HHHHHHHh---hcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-YDLVMQTK---QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~~i~~i~---~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
++... .+.| +..+.+.. ...++||| |.|||+++-|+.+++.+|||.||+|+.
T Consensus 189 ----------r~vtG------------vG~PQltAV~~~a~~a~~~gvpiI--ADGGi~~sGDI~KAlaaGAd~VMlGsl 244 (346)
T PRK05096 189 ----------RVKTG------------VGYPQLSAVIECADAAHGLGGQIV--SDGGCTVPGDVAKAFGGGADFVMLGGM 244 (346)
T ss_pred ----------ccccc------------cChhHHHHHHHHHHHHHHcCCCEE--ecCCcccccHHHHHHHcCCCEEEeChh
Confidence 12222 2222 22333322 23578998 899999999999999999999999999
Q ss_pred cccCC
Q 021609 255 VFKSG 259 (310)
Q Consensus 255 i~~a~ 259 (310)
|..++
T Consensus 245 lAGt~ 249 (346)
T PRK05096 245 LAGHE 249 (346)
T ss_pred hcCcc
Confidence 98754
No 114
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.26 E-value=3.9e-10 Score=105.50 Aligned_cols=190 Identities=18% Similarity=0.213 Sum_probs=123.9
Q ss_pred ceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccC
Q 021609 24 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIG 102 (310)
Q Consensus 24 ~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~ 102 (310)
+.+..|++- --|....+.++|+.+.+.|.-.++ + | . +++......+.. +..+.++...+
T Consensus 34 ~~l~~P~~i----nAM~t~iN~~LA~~a~~~G~~~~~-~-------k-~-------~~e~~~~~~r~~~~~~l~v~~~vg 93 (326)
T PRK05458 34 RTFKLPVVP----ANMQTIIDEKIAEWLAENGYFYIM-H-------R-F-------DPEARIPFIKDMHEQGLIASISVG 93 (326)
T ss_pred cEecCcEEE----ecccchhHHHHHHHHHHcCCEEEE-e-------c-C-------CHHHHHHHHHhccccccEEEEEec
Confidence 344455555 112234556899999888866542 2 2 1 134433333333 22334443332
Q ss_pred ----cHHHHHHHHHcCC--CEEE--eCCC--CCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCC
Q 021609 103 ----HFVEAQILEAIGI--DYVD--ESEV--LTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGT 171 (310)
Q Consensus 103 ----~~~~a~~~~~aGa--d~Vi--~~~~--~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~ 171 (310)
..+.+..+.++|+ |.+. .++. ....++++.+++..+++++++ ++.|.++++.+.++|+|++.+++..++
T Consensus 94 ~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~ 173 (326)
T PRK05458 94 VKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGK 173 (326)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCc
Confidence 3477888999965 9984 4443 335567777776667788888 499999999999999999988765442
Q ss_pred cchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHH--HHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 172 GNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYD--LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 172 ~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~--~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
..+ + +... ....++|. .+..+.+..++||| |+|||+++.|+.+++.+|||+|
T Consensus 174 ~~~-t------------~~~~-----------g~~~~~w~l~ai~~~~~~~~ipVI--AdGGI~~~~Di~KaLa~GA~aV 227 (326)
T PRK05458 174 VCI-T------------KIKT-----------GFGTGGWQLAALRWCAKAARKPII--ADGGIRTHGDIAKSIRFGATMV 227 (326)
T ss_pred ccc-c------------cccc-----------CCCCCccHHHHHHHHHHHcCCCEE--EeCCCCCHHHHHHHHHhCCCEE
Confidence 110 0 0000 01133333 47777776789998 8999999999999999999999
Q ss_pred EEccccccCC
Q 021609 250 FVGSGVFKSG 259 (310)
Q Consensus 250 ~VGsai~~a~ 259 (310)
++|++|++..
T Consensus 228 ~vG~~~~~~~ 237 (326)
T PRK05458 228 MIGSLFAGHE 237 (326)
T ss_pred EechhhcCCc
Confidence 9999999643
No 115
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=99.25 E-value=6.7e-10 Score=96.77 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=112.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++.+.++|++++ ++. ... ....+.++.+++.+. +++.+.... ..+.++.+.++|+|++..+..
T Consensus 20 ~~~~~l~~~G~~~v-ev~-------~~~----~~~~~~i~~l~~~~~~~~iGag~v~-~~~~~~~a~~~Ga~~i~~p~~- 85 (190)
T cd00452 20 ALAEALIEGGIRAI-EIT-------LRT----PGALEAIRALRKEFPEALIGAGTVL-TPEQADAAIAAGAQFIVSPGL- 85 (190)
T ss_pred HHHHHHHHCCCCEE-EEe-------CCC----hhHHHHHHHHHHHCCCCEEEEEeCC-CHHHHHHHHHcCCCEEEcCCC-
Confidence 57888899999987 552 111 112568888887764 555544432 247889999999999974332
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..++.+..+. .++.+++++.|.+|+.++.+.|+|++.++....
T Consensus 86 -~~~~~~~~~~--~~~~~i~gv~t~~e~~~A~~~Gad~i~~~p~~~---------------------------------- 128 (190)
T cd00452 86 -DPEVVKAANR--AGIPLLPGVATPTEIMQALELGADIVKLFPAEA---------------------------------- 128 (190)
T ss_pred -CHHHHHHHHH--cCCcEECCcCCHHHHHHHHHCCCCEEEEcCCcc----------------------------------
Confidence 3455555443 467788899999999999999999999853210
Q ss_pred ccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 205 KIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
. ..+.++.++... ++|++ +.||| +++++.+++++|++++.+++.+++
T Consensus 129 --~-g~~~~~~l~~~~~~~p~~--a~GGI-~~~n~~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 129 --V-GPAYIKALKGPFPQVRFM--PTGGV-SLDNAAEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred --c-CHHHHHHHHhhCCCCeEE--EeCCC-CHHHHHHHHHCCCEEEEEchhcch
Confidence 1 244566665543 58998 67999 899999999999999999999993
No 116
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.25 E-value=5.2e-10 Score=109.25 Aligned_cols=184 Identities=20% Similarity=0.229 Sum_probs=124.4
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc-c--CcHHHHHHHHHcCCCEEEeCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR-I--GHFVEAQILEAIGIDYVDESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~-~--~~~~~a~~~~~aGad~Vi~~~ 122 (310)
+.++.+.+.|++++ +.+ .|.. ..+ ..+.++++++.+..+.++.+. . ....+++.+.++|+|+|+...
T Consensus 20 ~~~~~~~~~Gv~~i-e~g-~p~~-~~~-------~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g 89 (430)
T PRK07028 20 EIAKEAVAGGADWI-EAG-TPLI-KSE-------GMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVCILG 89 (430)
T ss_pred HHHHHHHhcCCcEE-EeC-CHHH-HHh-------hHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEEEec
Confidence 45666677899987 542 1110 111 157888888877667766541 1 123478899999999997432
Q ss_pred C---CCchhHHHHHHhcCCCCcEEE---ecCC-HHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccC
Q 021609 123 V---LTPADEENHINKHNFRIPFVC---GCRN-LGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 123 ~---~~~~~~~~~i~~~~~~i~~~v---~~~t-~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
. ....+..+.++++ ++.+++ +++| .+.+..+.+.|+|+|.++. ++++.
T Consensus 90 ~~~~~~~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p-g~~~~---------------------- 144 (430)
T PRK07028 90 LADDSTIEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVHV-GIDQQ---------------------- 144 (430)
T ss_pred CCChHHHHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe-ccchh----------------------
Confidence 1 1233455555554 444443 5555 4556777889999998763 22110
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
......++.++++++..++|++ +.||| +.+++.+++++|+|++++||+|++++||...++.|++.++++
T Consensus 145 --------~~~~~~~~~l~~l~~~~~iPI~--a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~~ 213 (430)
T PRK07028 145 --------MLGKDPLELLKEVSEEVSIPIA--VAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDSG 213 (430)
T ss_pred --------hcCCChHHHHHHHHhhCCCcEE--EECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhcc
Confidence 0012235677778776679998 56999 699999999999999999999999999999999999988764
No 117
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.22 E-value=4.3e-10 Score=106.97 Aligned_cols=242 Identities=22% Similarity=0.336 Sum_probs=148.2
Q ss_pred cCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEecc------CCcc--cccccC-----------------CC
Q 021609 21 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALE------RVPA--DIRSQG-----------------GV 75 (310)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~------~~~~--~~~~~~-----------------G~ 75 (310)
.+.|.+..|++. ..+..++++.++..+.+.|+.+++..+ ..+. ..+-++ +.
T Consensus 38 i~~~~l~~Pivl----APMagVtd~~fr~~~~~~Galgvvsaegl~~~~~~~~~~~~QI~g~~~~~~~a~aa~~~~e~~~ 113 (369)
T TIGR01304 38 IDAYRFELPFIA----HPMDALVSPEFAIELGELGGLGVLNLEGLWGRHEDPDPAIAKIAEAYEEGDQAAATRLLQELHA 113 (369)
T ss_pred EcceecCCceee----cCCCcccCHHHHHHHHHcCCcccccchHHHhcCCCHHHHHHHHhhcCCChHHHHHHHHHHHcCC
Confidence 456667778777 778889999999999999997664432 0000 000000 00
Q ss_pred CCCCCHHHH----HHHHhhcCcceeeccccC---cHHHHHHHHHcCCCEEEeC----------CCCCchhHHHHHHhcCC
Q 021609 76 ARMSDPQLI----KEIKQSVTIPVMAKARIG---HFVEAQILEAIGIDYVDES----------EVLTPADEENHINKHNF 138 (310)
Q Consensus 76 ~~~~~~~~i----~~i~~~~~iPv~vk~~~~---~~~~a~~~~~aGad~Vi~~----------~~~~~~~~~~~i~~~~~ 138 (310)
....++.+ +++++. .+.++.+++ ..+.++.+.++|+|.+... ..-++.++.+.++. .
T Consensus 114 -~~~~p~l~~~ii~~vr~a---~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~--~ 187 (369)
T TIGR01304 114 -APLKPELLGERIAEVRDS---GVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE--L 187 (369)
T ss_pred -CccChHHHHHHHHHHHhc---ceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH--C
Confidence 11224443 344443 377777664 3577899999999999632 11235555565543 4
Q ss_pred CCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHH
Q 021609 139 RIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQT 216 (310)
Q Consensus 139 ~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i 216 (310)
++++++ ++.|.++++++.+.|+|.|.. +++++.. . +... .. .+....+..+
T Consensus 188 ~IPVI~G~V~t~e~A~~~~~aGaDgV~~-G~gg~~~-~-------------~~~l------------g~~~p~~~ai~d~ 240 (369)
T TIGR01304 188 DVPVIAGGVNDYTTALHLMRTGAAGVIV-GPGGANT-T-------------RLVL------------GIEVPMATAIADV 240 (369)
T ss_pred CCCEEEeCCCCHHHHHHHHHcCCCEEEE-CCCCCcc-c-------------cccc------------CCCCCHHHHHHHH
Confidence 678877 799999999999999999873 3322110 0 0000 00 1112222222
Q ss_pred h--------hcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCC-HHHHH--------------------
Q 021609 217 K--------QLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD-PVKRA-------------------- 265 (310)
Q Consensus 217 ~--------~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~d-p~~~a-------------------- 265 (310)
. +.. .+||| |+|||.+..|+.+++.+|||+|++|++|+.+.. |-.-.
T Consensus 241 ~~a~~~~~~e~g~r~vpVI--AdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~~~~~~~~~~~~~ 318 (369)
T TIGR01304 241 AAARRDYLDETGGRYVHVI--ADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAHPRLPRGVVTESG 318 (369)
T ss_pred HHHHHHHHHhcCCCCceEE--EeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcCccCCcccccccc
Confidence 1 111 38998 899999999999999999999999999998542 21100
Q ss_pred --H---HHHHHHhcc-CChhhhhhhhhhcccchhcccCccch
Q 021609 266 --Q---AIVRAVTHY-SDPEVLAEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 266 --~---~l~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (310)
- .+.+.+..- ..+.+..++---+.++|--.|.+|+|
T Consensus 319 ~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~ 360 (369)
T TIGR01304 319 TVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLK 360 (369)
T ss_pred ccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhh
Confidence 0 122222211 23445566667777888888888876
No 118
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.21 E-value=1.1e-10 Score=108.23 Aligned_cols=183 Identities=22% Similarity=0.323 Sum_probs=121.1
Q ss_pred HHHHHHHHcC-CcEEEecc-CCcccccccCCCCCCCCHHHHH----HHHhhcCcceeeccccCc---HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAG-ACAVMALE-RVPADIRSQGGVARMSDPQLIK----EIKQSVTIPVMAKARIGH---FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~G-a~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~----~i~~~~~iPv~vk~~~~~---~~~a~~~~~aGad 116 (310)
+.+..+++.+ ++.+ .|| .+|... +|.....+++.+. .+++.+.+||.+|+.... .+.++.+.++|+|
T Consensus 113 d~~~~~~~~~~ad~i-elNiScPnt~---g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~D 188 (310)
T COG0167 113 DYARLLEEAGDADAI-ELNISCPNTP---GGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGAD 188 (310)
T ss_pred HHHHHHHhcCCCCEE-EEEccCCCCC---ChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCc
Confidence 4677888888 8876 888 555422 2333333455444 556677999999987642 3556888889999
Q ss_pred EEEeCCCCCchh-HHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCC-CCcchHHHHHHHHhhccceEeeccc
Q 021609 117 YVDESEVLTPAD-EENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEA-GTGNIIEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 117 ~Vi~~~~~~~~~-~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~-~~~~~~~~~~~~r~~~~~~~~l~~~ 194 (310)
+++..+...... +. ..+. +. +--+..+ .+|...
T Consensus 189 gl~~~NT~~~~~~id---------------~~~~---------~~--~~~~~~GGLSG~~i------------------- 223 (310)
T COG0167 189 GLIAINTTKSGMKID---------------LETK---------KP--VLANETGGLSGPPL------------------- 223 (310)
T ss_pred EEEEEeecccccccc---------------cccc---------cc--ccCcCCCCcCcccc-------------------
Confidence 996333211000 00 0000 00 0001111 122100
Q ss_pred ChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 195 DDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
..-...+++++.+.. ++|+| +.|||.|.+|+.+.+.+||+.|+|+|+++.. -| ...+++.+.+
T Consensus 224 -----------kp~al~~v~~l~~~~~~~ipII--GvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~-Gp-~i~~~I~~~l 288 (310)
T COG0167 224 -----------KPIALRVVAELYKRLGGDIPII--GVGGIETGEDALEFILAGASAVQVGTALIYK-GP-GIVKEIIKGL 288 (310)
T ss_pred -----------hHHHHHHHHHHHHhcCCCCcEE--EecCcCcHHHHHHHHHcCCchheeeeeeeee-Cc-hHHHHHHHHH
Confidence 011256777777764 49998 7899999999999999999999999999983 24 4667799999
Q ss_pred hccCChhhhhhhhhhcccch
Q 021609 273 THYSDPEVLAEVSCGLGEAM 292 (310)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~ 292 (310)
.++++++++.++++..|.+.
T Consensus 289 ~~~l~~~g~~si~d~iG~~~ 308 (310)
T COG0167 289 ARWLEEKGFESIQDIIGSAL 308 (310)
T ss_pred HHHHHHcCCCCHHHHhchhc
Confidence 99999999999999999764
No 119
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.20 E-value=1.4e-09 Score=100.93 Aligned_cols=192 Identities=11% Similarity=0.085 Sum_probs=126.1
Q ss_pred eecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC--cceeeccccCc
Q 021609 26 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT--IPVMAKARIGH 103 (310)
Q Consensus 26 ~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~--iPv~vk~~~~~ 103 (310)
...|++. .-+..+++.++|..+.+.|.-.+++-+ +. .....+.+++...... +.+.+.....+
T Consensus 44 ~~iPii~----AnMdtv~~~~mA~~la~~g~~~~iHk~--------~~---~e~~~~~v~~~~~~~~~~~~vsvG~~~~d 108 (343)
T TIGR01305 44 SGVPIIA----ANMDTVGTFEMAAALSQHSIFTAIHKH--------YS---VDEWKAFATNSSPDCLQNVAVSSGSSDND 108 (343)
T ss_pred eCCceEe----cCCCcccCHHHHHHHHHCCCeEEEeeC--------CC---HHHHHHHHHhhcccccceEEEEeccCHHH
Confidence 3466666 557788999999999999877664421 11 0000123333222222 22333333235
Q ss_pred HHHHHHHHHcC--CCEEE--eCCCC--CchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHH
Q 021609 104 FVEAQILEAIG--IDYVD--ESEVL--TPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIE 176 (310)
Q Consensus 104 ~~~a~~~~~aG--ad~Vi--~~~~~--~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~ 176 (310)
.+.++.+.++| +|.++ .++.- ...+.++.+++..++..++.+ +-|.+.++.++++|+|.|.+.-.. |.++.
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGp--GSict 186 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGP--GSVCT 186 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccC--CCccc
Confidence 68888899885 99985 44443 345667777776678888888 999999999999999999876211 12221
Q ss_pred HHHHHHhhccceEeecccChhHHHHhhhccC-CcHHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 177 ~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
+ |.+. ..+ +.+..+.++.+. .++||+ +.|||++..|+.+++.+|||+||+|
T Consensus 187 t-----------R~~~------------Gvg~pqltAv~~~a~aa~~~~v~VI--aDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 187 T-----------RTKT------------GVGYPQLSAVIECADAAHGLKGHII--SDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred C-----------ceeC------------CCCcCHHHHHHHHHHHhccCCCeEE--EcCCcCchhHHHHHHHcCCCEEEEC
Confidence 0 1221 122 345555555443 368998 7899999999999999999999999
Q ss_pred cccccCC
Q 021609 253 SGVFKSG 259 (310)
Q Consensus 253 sai~~a~ 259 (310)
+.+...+
T Consensus 242 ~llAG~~ 248 (343)
T TIGR01305 242 GMFAGHT 248 (343)
T ss_pred HhhhCcC
Confidence 8887744
No 120
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=99.19 E-value=5.4e-09 Score=91.72 Aligned_cols=156 Identities=13% Similarity=0.165 Sum_probs=113.7
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccCcHHHHHHHHHcCCCEEEeCCC
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIGHFVEAQILEAIGIDYVDESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~ 123 (310)
+.++++.++|.+.+ +-++ . ....+.++++++.+. +.+.+.... ..++++.+.++||++++.+..
T Consensus 24 ~~~~al~~~Gi~~iEit~~-------t------~~a~~~i~~l~~~~~~~~vGAGTVl-~~~~a~~a~~aGA~FivsP~~ 89 (204)
T TIGR01182 24 PLAKALIEGGLRVLEVTLR-------T------PVALDAIRLLRKEVPDALIGAGTVL-NPEQLRQAVDAGAQFIVSPGL 89 (204)
T ss_pred HHHHHHHHcCCCEEEEeCC-------C------ccHHHHHHHHHHHCCCCEEEEEeCC-CHHHHHHHHHcCCCEEECCCC
Confidence 56888899999976 2221 0 111578888887763 334433332 458899999999999975543
Q ss_pred CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhh
Q 021609 124 LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 124 ~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~ 203 (310)
..++.+..++ .+++++.++.|+.|+..+.++|+++|++++....+
T Consensus 90 --~~~v~~~~~~--~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~G------------------------------- 134 (204)
T TIGR01182 90 --TPELAKHAQD--HGIPIIPGVATPSEIMLALELGITALKLFPAEVSG------------------------------- 134 (204)
T ss_pred --CHHHHHHHHH--cCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcC-------------------------------
Confidence 4566666654 57899999999999999999999999998643111
Q ss_pred hccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 204 KKIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 204 ~~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
...+++.++. ..++|++ +.||| +++++.+++++|+.++.+||.|++.
T Consensus 135 -----G~~yikal~~plp~i~~~--ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~~ 182 (204)
T TIGR01182 135 -----GVKMLKALAGPFPQVRFC--PTGGI-NLANVRDYLAAPNVACGGGSWLVPK 182 (204)
T ss_pred -----CHHHHHHHhccCCCCcEE--ecCCC-CHHHHHHHHhCCCEEEEEChhhcCc
Confidence 0123344433 2468898 89999 6999999999999999999999963
No 121
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=99.18 E-value=5e-10 Score=100.61 Aligned_cols=128 Identities=23% Similarity=0.291 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCCEEEe---CCCCCch----hHHHHHHh-cCCCCcEEEecCC----------HHH----HHHHHHhCCC
Q 021609 104 FVEAQILEAIGIDYVDE---SEVLTPA----DEENHINK-HNFRIPFVCGCRN----------LGE----ALRRIREGAA 161 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~---~~~~~~~----~~~~~i~~-~~~~i~~~v~~~t----------~~e----a~~~~~~Gad 161 (310)
...++.+.+.||+.+.. ....+.. ++.+..+. +..+++++++... .++ ++.+.+.|+|
T Consensus 79 ~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD 158 (235)
T cd00958 79 VASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGAD 158 (235)
T ss_pred hcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCC
Confidence 34578889999998831 1122211 22222222 3467777776532 333 3336688999
Q ss_pred EEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCC--CCHHH--
Q 021609 162 MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGV--ATPAD-- 237 (310)
Q Consensus 162 ~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI--~t~~d-- 237 (310)
||++... + +.+.++++.+..++||+ ++||+ .|+++
T Consensus 159 ~Ik~~~~---~------------------------------------~~~~~~~i~~~~~~pvv--~~GG~~~~~~~~~l 197 (235)
T cd00958 159 IVKTKYT---G------------------------------------DAESFKEVVEGCPVPVV--IAGGPKKDSEEEFL 197 (235)
T ss_pred EEEecCC---C------------------------------------CHHHHHHHHhcCCCCEE--EeCCCCCCCHHHHH
Confidence 9998521 1 23446666666779987 45776 55654
Q ss_pred --HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 238 --AAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 238 --~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+.+++++|++|+.+|++|++++||...++++...+
T Consensus 198 ~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 198 KMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred HHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHHHh
Confidence 88889999999999999999999999988887654
No 122
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.18 E-value=3.7e-10 Score=101.47 Aligned_cols=132 Identities=24% Similarity=0.304 Sum_probs=90.6
Q ss_pred HHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----HhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 47 QARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.|+.+++ +++.| +|| |+++..+...|+.++++++.+.++ ++ .++||.+|.+.++.+
T Consensus 90 aa~~~~~-~~~~i-elN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~~-------------- 152 (233)
T cd02911 90 AAALVAK-NAAIL-EINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVDV-------------- 152 (233)
T ss_pred HHHHHhh-cCCEE-EEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcCc--------------
Confidence 4555555 45755 888 666555666688888888766655 44 589999999976310
Q ss_pred eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHH
Q 021609 120 ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 120 ~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~ 199 (310)
.+.+-++.+.++|+|++.++.. +.+
T Consensus 153 ---------------------------~~~~la~~l~~aG~d~ihv~~~-~~g--------------------------- 177 (233)
T cd02911 153 ---------------------------DDEELARLIEKAGADIIHVDAM-DPG--------------------------- 177 (233)
T ss_pred ---------------------------CHHHHHHHHHHhCCCEEEECcC-CCC---------------------------
Confidence 0112244556778887644321 111
Q ss_pred HHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 021609 200 FTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 200 ~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~ 264 (310)
...+++.+++++ .++||+ ++|||.|++|+.+++..|||+|++|++ .+|+..
T Consensus 178 ------~~ad~~~I~~i~--~~ipVI--gnGgI~s~eda~~~l~~GaD~VmiGR~----~~p~~~ 228 (233)
T cd02911 178 ------NHADLKKIRDIS--TELFII--GNNSVTTIESAKEMFSYGADMVSVARA----SLPENI 228 (233)
T ss_pred ------CCCcHHHHHHhc--CCCEEE--EECCcCCHHHHHHHHHcCCCEEEEcCC----CCchHH
Confidence 123466777776 579998 889999999999999999999999999 378743
No 123
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.16 E-value=5.5e-10 Score=99.74 Aligned_cols=143 Identities=27% Similarity=0.465 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHH----HHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQ----LIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~----~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.++|+++| +|| |.+...+...|+.....++ .++++++.+++|+.+|.+.++..
T Consensus 71 ~aa~~~~~aG~d~i-eln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~------------- 136 (231)
T cd02801 71 EAAKIVEELGADGI-DLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDD------------- 136 (231)
T ss_pred HHHHHHHhcCCCEE-EEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCC-------------
Confidence 46778888999997 776 4433323333455555554 45556667778999998765310
Q ss_pred EeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhH
Q 021609 119 DESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~ 198 (310)
..+.. +-+..+.+.|++++.++++.....
T Consensus 137 -------~~~~~-------------------~~~~~l~~~Gvd~i~v~~~~~~~~------------------------- 165 (231)
T cd02801 137 -------EEETL-------------------ELAKALEDAGASALTVHGRTREQR------------------------- 165 (231)
T ss_pred -------chHHH-------------------HHHHHHHHhCCCEEEECCCCHHHc-------------------------
Confidence 00111 123445567999999887531000
Q ss_pred HHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHH
Q 021609 199 VFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 199 ~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~-GadgV~VGsai~~a~dp~ 262 (310)
......++.++++++..++||+ ++|||.+++|+.+++.. |||+|++|++++. ||.
T Consensus 166 -----~~~~~~~~~~~~i~~~~~ipvi--~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~--~P~ 221 (231)
T cd02801 166 -----YSGPADWDYIAEIKEAVSIPVI--ANGDIFSLEDALRCLEQTGVDGVMIGRGALG--NPW 221 (231)
T ss_pred -----CCCCCCHHHHHHHHhCCCCeEE--EeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh--CCH
Confidence 0123457888889888899998 78999999999999987 8999999999997 776
No 124
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.13 E-value=9.3e-10 Score=109.08 Aligned_cols=133 Identities=19% Similarity=0.196 Sum_probs=95.7
Q ss_pred HHHHHHHHHcCCCEEE--eCCCCCch--hHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 104 FVEAQILEAIGIDYVD--ESEVLTPA--DEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi--~~~~~~~~--~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.+.++.+.++|+|.|. .++.-+.. +.++.+++..+++.+++ ++.|.++++.+.++|+|.|.+....+ .++.+
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G--~~~~t- 326 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSG--SICTT- 326 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCC--ccccC-
Confidence 5788999999999994 55554444 67778877556777765 69999999999999999998753222 11100
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
+...... ......+..+.++.+..++||| +.|||+++.|+.+++.+||++|++|++|+..
T Consensus 327 ----------~~~~~~g--------~~~~~~i~~~~~~~~~~~vpVI--adGGI~~~~di~kAla~GA~~V~vGs~~~~t 386 (505)
T PLN02274 327 ----------QEVCAVG--------RGQATAVYKVASIAAQHGVPVI--ADGGISNSGHIVKALTLGASTVMMGSFLAGT 386 (505)
T ss_pred ----------ccccccC--------CCcccHHHHHHHHHHhcCCeEE--EeCCCCCHHHHHHHHHcCCCEEEEchhhccc
Confidence 0000000 0011234456666666789998 8999999999999999999999999999985
Q ss_pred C
Q 021609 259 G 259 (310)
Q Consensus 259 ~ 259 (310)
.
T Consensus 387 ~ 387 (505)
T PLN02274 387 T 387 (505)
T ss_pred c
Confidence 4
No 125
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=99.13 E-value=4.7e-09 Score=100.51 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=108.7
Q ss_pred HHHHHHHHhh-cCcceeeccccCc--HHHHHHHHHcCCCEEEeCCCCC---chhHHHHHHhcCCCCcEEEe---cCCHHH
Q 021609 81 PQLIKEIKQS-VTIPVMAKARIGH--FVEAQILEAIGIDYVDESEVLT---PADEENHINKHNFRIPFVCG---CRNLGE 151 (310)
Q Consensus 81 ~~~i~~i~~~-~~iPv~vk~~~~~--~~~a~~~~~aGad~Vi~~~~~~---~~~~~~~i~~~~~~i~~~v~---~~t~~e 151 (310)
++.++++++. .+.|+.+.+.+.+ ...++.+.++|+|.+..+.... .....+.+++ .++.++++ ++|..+
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk--~GikvgVD~lnp~tp~e 291 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQK--TGIYSILDMLNVEDPVK 291 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHH--cCCEEEEEEcCCCCHHH
Confidence 6889999887 5788888765532 1226778899999996433222 3344455544 45666664 556666
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAG 230 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~G 230 (310)
..+....++|+|.+|.....+ ...+.++.++++++. .++++. ..|
T Consensus 292 ~i~~l~~~vD~Vllht~vdp~--------------------------------~~~~~~~kI~~ikk~~~~~~I~--VdG 337 (391)
T PRK13307 292 LLESLKVKPDVVELHRGIDEE--------------------------------GTEHAWGNIKEIKKAGGKILVA--VAG 337 (391)
T ss_pred HHHHhhCCCCEEEEccccCCC--------------------------------cccchHHHHHHHHHhCCCCcEE--EEC
Confidence 666557899999887321100 012234455666653 467787 579
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 231 GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
|| +++++.+++++|+|.+++||+|++++||...+++|.+.+
T Consensus 338 GI-~~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 338 GV-RVENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred Cc-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 99 599999999999999999999999999999999988877
No 126
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=99.12 E-value=4.7e-09 Score=94.08 Aligned_cols=188 Identities=13% Similarity=0.132 Sum_probs=117.0
Q ss_pred HHHHHHHHcCCcEE-Eecc-CCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccC-cHHHHHHHHHcCCCEEEeC
Q 021609 46 EQARVAEEAGACAV-MALE-RVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIG-HFVEAQILEAIGIDYVDES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~~ 121 (310)
+..+.++++|++++ +|+- ......-.+| ++.++.+++.+ ++|+-++.-.. ....++.+.++|+|.+...
T Consensus 23 ~~~~~l~~~~~~~~H~DimDg~fvpn~~~G-------~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH 95 (228)
T PTZ00170 23 DEAQDVLSGGADWLHVDVMDGHFVPNLSFG-------PPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFH 95 (228)
T ss_pred HHHHHHHHcCCCEEEEecccCccCCCcCcC-------HHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEe
Confidence 67888999999988 4431 1111011223 78999999887 89998887654 3456688999999999532
Q ss_pred -CCC-C-chhHHHHHHhcCCCCcEEEec---CCHHHHHHHHH-hCCCEE---EEcCCCCCcchHHHHHHHHhhccceEee
Q 021609 122 -EVL-T-PADEENHINKHNFRIPFVCGC---RNLGEALRRIR-EGAAMI---RTKGEAGTGNIIEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 122 -~~~-~-~~~~~~~i~~~~~~i~~~v~~---~t~~ea~~~~~-~Gad~V---~v~g~~~~~~~~~~~~~~r~~~~~~~~l 191 (310)
... . +....+.+++. +..+++.. .+.++.....+ ...|+| .++. ++.+-.
T Consensus 96 ~ea~~~~~~~~l~~ik~~--G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~p-G~~gq~----------------- 155 (228)
T PTZ00170 96 IEATEDDPKAVARKIREA--GMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEP-GFGGQS----------------- 155 (228)
T ss_pred ccCCchHHHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHccchhhhHHhhhccc-CCCCcE-----------------
Confidence 221 1 34445555443 33343432 23344443332 224554 3331 111100
Q ss_pred cccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 192 RNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
......+.++++++.. +..+. ..||| +++++..+.++|+|.+++||+|++++||...++++.+
T Consensus 156 -------------~~~~~~~ki~~~~~~~~~~~I~--VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~ 219 (228)
T PTZ00170 156 -------------FMHDMMPKVRELRKRYPHLNIQ--VDGGI-NLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRE 219 (228)
T ss_pred -------------ecHHHHHHHHHHHHhcccCeEE--ECCCC-CHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHH
Confidence 0011234445555432 34454 58999 6999999999999999999999999999999999998
Q ss_pred HHhccC
Q 021609 271 AVTHYS 276 (310)
Q Consensus 271 ~i~~~~ 276 (310)
.++.++
T Consensus 220 ~~~~~~ 225 (228)
T PTZ00170 220 SVQKHL 225 (228)
T ss_pred HHHHHh
Confidence 887644
No 127
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.12 E-value=2.6e-09 Score=103.48 Aligned_cols=191 Identities=22% Similarity=0.213 Sum_probs=117.7
Q ss_pred cCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCc-c-eeec
Q 021609 21 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTI-P-VMAK 98 (310)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~i-P-v~vk 98 (310)
...|++++|+++ +++...+++++++.++.++|.-+++.. ++.......+.|+++++.++- | +.++
T Consensus 12 ~~~lgiryPiiq---gpMa~GiSs~eLVaAVs~AGgLG~lga----------g~l~~e~l~~~I~~ir~~~~~~p~fGVN 78 (444)
T TIGR02814 12 REDYGVRYAYVA---GAMANGIASAELVIAMGRAGILGFFGA----------GGLPLEEVEQAIHRIQQALPGGPAYGVN 78 (444)
T ss_pred HHHhCCCCcEEC---ccccCCCCCHHHHHHHHhCCceeeeCC----------CCCCHHHHHHHHHHHHHhcCCCCceEEE
Confidence 356899999999 554447999999999999998876332 111111113466667776644 6 8888
Q ss_pred cccCc------HHHHHHHHHcCCCEEEeCCC--CCchhHHHHHHhcCC----------CCcEEEec--------------
Q 021609 99 ARIGH------FVEAQILEAIGIDYVDESEV--LTPADEENHINKHNF----------RIPFVCGC-------------- 146 (310)
Q Consensus 99 ~~~~~------~~~a~~~~~aGad~Vi~~~~--~~~~~~~~~i~~~~~----------~i~~~v~~-------------- 146 (310)
..... .+.++.+.+.|+..|..+.. .++... ..+..+. ...++..+
T Consensus 79 L~~~~~~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~v--~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p 156 (444)
T TIGR02814 79 LIHSPSDPALEWGLVDLLLRHGVRIVEASAFMQLTPALV--RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAP 156 (444)
T ss_pred ecccCCCcccHHHHHHHHHHcCCCEEEeccccCCCcchh--hhhhccccccccccccccceEEEecCCHHHHHHhcCCCc
Confidence 65431 23457788899998864422 122111 1111111 01222222
Q ss_pred ------------CCHHHHHHHHHhC-CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHH
Q 021609 147 ------------RNLGEALRRIREG-AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLV 213 (310)
Q Consensus 147 ------------~t~~ea~~~~~~G-ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i 213 (310)
.|.+||..+.+.| +|.|.+. ...+||. +..+.+.++
T Consensus 157 ~~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve-~EAGGHt------------------------------g~~~~~~Ll 205 (444)
T TIGR02814 157 AHILQKLLAEGRITREEAELARRVPVADDICVE-ADSGGHT------------------------------DNRPLVVLL 205 (444)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe-ccCCCCC------------------------------CCCcHHHHH
Confidence 2556676677777 5888776 4333441 001122333
Q ss_pred HHHh---hcC--------CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 214 MQTK---QLG--------RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 214 ~~i~---~~~--------~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
..+. +.. ++||+ |+|||.|++++..++.+|||+|++||.+.-+.
T Consensus 206 p~i~~lrd~v~~~~~y~~~VpVi--AAGGI~t~~~vaAAlaLGAdgV~~GT~flat~ 260 (444)
T TIGR02814 206 PAIIRLRDTLMRRYGYRKPIRVG--AAGGIGTPEAAAAAFMLGADFIVTGSVNQCTV 260 (444)
T ss_pred HHHHHHHHHHhhcccCCCCceEE--EeCCCCCHHHHHHHHHcCCcEEEeccHHHhCc
Confidence 3332 222 68888 88999999999999999999999999999754
No 128
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=99.11 E-value=7.7e-09 Score=90.95 Aligned_cols=173 Identities=23% Similarity=0.264 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-----CcceeeccccCcHHHHHHHHHcCCC
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-----TIPVMAKARIGHFVEAQILEAIGID 116 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-----~iPv~vk~~~~~~~~a~~~~~aGad 116 (310)
+++++.++.+.++|++++ ++. ....+.+..+++..+++++.+ .++|++++.. .+..+.+.+.|+|
T Consensus 6 i~~~ed~~~a~~~Gvd~i-g~i-------~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~--~~i~~ia~~~~~d 75 (203)
T cd00405 6 ITTLEDALAAAEAGADAI-GFI-------FAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNEDL--EEILEIAEELGLD 75 (203)
T ss_pred CCCHHHHHHHHHcCCCEE-EEe-------cCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCH--HHHHHHHHhcCCC
Confidence 678899999999999987 652 112232333467777776544 3555555542 2445678889999
Q ss_pred EEEeCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHH--HHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecc
Q 021609 117 YVDESEVLTPADEENHINK-HNFRIPFVCGCRNLGEA--LRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea--~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
+|...... +.+..+.+++ .+..+...+.+.+..+. ..+...++||+.+........
T Consensus 76 ~Vqlhg~e-~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~-------------------- 134 (203)
T cd00405 76 VVQLHGDE-SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGG-------------------- 134 (203)
T ss_pred EEEECCCC-CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCC--------------------
Confidence 99544332 3334444443 23344423454444333 344557899986543211000
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccC
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKS 258 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a 258 (310)
. ..+...+++.++++. .++|++ +.||| |++++.++++.| ++||.|+|++..+
T Consensus 135 -G-------g~g~~~~~~~l~~~~--~~~Pvi--laGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~ 187 (203)
T cd00405 135 -G-------GTGKTFDWSLLRGLA--SRKPVI--LAGGL-TPDNVAEAIRLVRPYGVDVSSGVETS 187 (203)
T ss_pred -C-------CCcceEChHHhhccc--cCCCEE--EECCC-ChHHHHHHHHhcCCCEEEcCCcccCC
Confidence 0 001123466666655 468998 56999 899999999998 9999999999986
No 129
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=99.09 E-value=3.4e-08 Score=88.06 Aligned_cols=188 Identities=15% Similarity=0.174 Sum_probs=117.9
Q ss_pred HHHHHHHHcCCcEE-Eec-cCCcccccccCCCCCCCCHHHHHHHHhh-cCcceeeccccC-cHHHHHHHHHcCCCEEEe-
Q 021609 46 EQARVAEEAGACAV-MAL-ERVPADIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKARIG-HFVEAQILEAIGIDYVDE- 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~- 120 (310)
+..+.++++|++++ +|+ +......-.++ ++.++.+++. +++|+-+.+-+. ....++.+.++|+|.+..
T Consensus 20 ~~i~~l~~~g~d~lHiDimDG~FVPN~tfg-------~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H 92 (223)
T PRK08745 20 EEVDNVLKAGADWVHFDVMDNHYVPNLTIG-------PMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFH 92 (223)
T ss_pred HHHHHHHHcCCCEEEEecccCccCCCcccC-------HHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEc
Confidence 67888999999998 443 11111111233 7899999988 699988876553 455678899999999952
Q ss_pred CCC-CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEc--CCCCCcchHHHHHHHHhhccceEeecccChh
Q 021609 121 SEV-LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTK--GEAGTGNIIEAVRHVRSVMGDIRVLRNMDDD 197 (310)
Q Consensus 121 ~~~-~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~--g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d 197 (310)
... ..+....+.+++.+...-+...+.|.-+...-.-.-+|+|.+. .+++.|-- .
T Consensus 93 ~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~---------------f------- 150 (223)
T PRK08745 93 PEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQA---------------F------- 150 (223)
T ss_pred ccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCcc---------------c-------
Confidence 222 2355666777765544444444555544444333346665433 22332210 0
Q ss_pred HHHHhhhccCCcHHHHHHHhhc-----CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 198 EVFTFAKKIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~i~~~-----~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
....++-++++++. .++.+- ..||| +.+++.++.++|||.+++||+|++++||...++.+++.+
T Consensus 151 --------i~~~l~KI~~l~~~~~~~~~~~~Ie--VDGGI-~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 151 --------IPSALDKLRAIRKKIDALGKPIRLE--IDGGV-KADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAV 219 (223)
T ss_pred --------cHHHHHHHHHHHHHHHhcCCCeeEE--EECCC-CHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHH
Confidence 01112223333221 133344 57999 699999999999999999999999999998888887765
Q ss_pred h
Q 021609 273 T 273 (310)
Q Consensus 273 ~ 273 (310)
.
T Consensus 220 ~ 220 (223)
T PRK08745 220 A 220 (223)
T ss_pred H
Confidence 4
No 130
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.07 E-value=1.3e-09 Score=107.30 Aligned_cols=129 Identities=19% Similarity=0.277 Sum_probs=97.3
Q ss_pred HHHHHHHHcCCCEEE--eCCC--CCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHH
Q 021609 105 VEAQILEAIGIDYVD--ESEV--LTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVR 179 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi--~~~~--~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~ 179 (310)
+.++.+.++|+|.|. .++. ....+.++.+++..+++.+++ .+.|.++++.+.++|+|.|.+. .++|.+|++
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vg--ig~gsictt-- 305 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVG--VGPGAMCTT-- 305 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEEC--ccCCccccc--
Confidence 667888889999984 4443 345677788877667889888 6999999999999999999875 233454432
Q ss_pred HHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh---cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 180 HVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 180 ~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~---~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
+.+... ..+.+..+.++++ ..++||| |.|||+++.|+.+++.+||++|++|+.|.
T Consensus 306 ---------~~~~~~-----------~~p~~~av~~~~~~~~~~~~~vi--a~ggi~~~~~~~~al~~ga~~v~~g~~~a 363 (479)
T PRK07807 306 ---------RMMTGV-----------GRPQFSAVLECAAAARELGAHVW--ADGGVRHPRDVALALAAGASNVMIGSWFA 363 (479)
T ss_pred ---------ccccCC-----------chhHHHHHHHHHHHHHhcCCcEE--ecCCCCCHHHHHHHHHcCCCeeeccHhhc
Confidence 111111 1234666666655 3579998 89999999999999999999999999998
Q ss_pred cCC
Q 021609 257 KSG 259 (310)
Q Consensus 257 ~a~ 259 (310)
.++
T Consensus 364 g~~ 366 (479)
T PRK07807 364 GTY 366 (479)
T ss_pred cCc
Confidence 854
No 131
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.06 E-value=9.6e-09 Score=88.06 Aligned_cols=171 Identities=26% Similarity=0.364 Sum_probs=107.6
Q ss_pred HHHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc-HHH----HHHHHHcCCC
Q 021609 45 PEQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH-FVE----AQILEAIGID 116 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~-~~~----a~~~~~aGad 116 (310)
.++++.+.+.|++.+ .+. ..+.... ....+.+..+++.++.|+.+...... .+. ++.+.++|+|
T Consensus 15 ~~~~~~~~~~G~~~v-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d 86 (200)
T cd04722 15 VELAKAAAEAGADAI-IVGTRSSDPEEAE-------TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGAD 86 (200)
T ss_pred HHHHHHHHcCCCCEE-EEeeEEECcccCC-------CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCC
Confidence 478889999999987 331 1111100 00013477777778999999876542 222 3578899999
Q ss_pred EEEeCCCCC-----chhHHHHHHhcCCCCcEEEecCCHHHHHH--HHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceE
Q 021609 117 YVDESEVLT-----PADEENHINKHNFRIPFVCGCRNLGEALR--RIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIR 189 (310)
Q Consensus 117 ~Vi~~~~~~-----~~~~~~~i~~~~~~i~~~v~~~t~~ea~~--~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~ 189 (310)
.|....... ..+..+.+++..+++++++.++...+... +.+.|++++.++++..++..
T Consensus 87 ~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~--------------- 151 (200)
T cd04722 87 GVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGG--------------- 151 (200)
T ss_pred EEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCC---------------
Confidence 996433322 33444455443236777777765544444 46889999998765432210
Q ss_pred eecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 190 VLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
.. ........+..++...++|++ ++|||.+++++.+++++|||++++||
T Consensus 152 ----~~---------~~~~~~~~~~~~~~~~~~pi~--~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 152 ----RD---------AVPIADLLLILAKRGSKVPVI--AGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred ----cc---------CchhHHHHHHHHHhcCCCCEE--EECCCCCHHHHHHHHHhCCCEEEecC
Confidence 00 000012344455555789998 68999999999999999999999997
No 132
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.06 E-value=3.7e-10 Score=107.17 Aligned_cols=66 Identities=23% Similarity=0.366 Sum_probs=54.2
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChh
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPE 279 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~ 279 (310)
+++++++++.. ++||+ ++|||.|++|+.+++.+|||+|++||+++. ++|. ..+++.+.+++|++++
T Consensus 276 l~~v~~l~~~~~~~ipIi--g~GGI~s~eda~e~l~aGAd~V~v~~~~~~-~gP~-~~~~i~~~L~~~l~~~ 343 (344)
T PRK05286 276 TEVIRRLYKELGGRLPII--GVGGIDSAEDAYEKIRAGASLVQIYSGLIY-EGPG-LVKEIVRGLARLLRRD 343 (344)
T ss_pred HHHHHHHHHHhCCCCCEE--EECCCCCHHHHHHHHHcCCCHHHHHHHHHH-hCch-HHHHHHHHHHHHHHhc
Confidence 56777787766 79998 789999999999999999999999999985 3576 4455888888877643
No 133
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.05 E-value=2.5e-08 Score=88.70 Aligned_cols=154 Identities=16% Similarity=0.236 Sum_probs=109.1
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhc--Ccc---eeeccccCcHHHHHHHHHcCCCEEE
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIP---VMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iP---v~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
+.++++.++|...+ +-++ . ....+.++++++.. ..| +.+... -..++++.+.++||++++
T Consensus 31 ~~~~al~~gGi~~iEiT~~-------t------p~a~~~i~~l~~~~~~~~p~~~vGaGTV-l~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 31 KVIKACYDGGARVFEFTNR-------G------DFAHEVFAELVKYAAKELPGMILGVGSI-VDAATAALYIQLGANFIV 96 (222)
T ss_pred HHHHHHHHCCCCEEEEeCC-------C------CcHHHHHHHHHHHHHhhCCCeEEeeEeC-cCHHHHHHHHHcCCCEEE
Confidence 56888899999876 2221 0 11156677665432 223 333332 245889999999999997
Q ss_pred eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHH
Q 021609 120 ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 120 ~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~ 199 (310)
.+. -..++.+..++ .+++++.++.|+.|+..+.++|+++|++++....|
T Consensus 97 sP~--~~~~v~~~~~~--~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G--------------------------- 145 (222)
T PRK07114 97 TPL--FNPDIAKVCNR--RKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYG--------------------------- 145 (222)
T ss_pred CCC--CCHHHHHHHHH--cCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccC---------------------------
Confidence 554 24556666543 68999999999999999999999999998642111
Q ss_pred HHhhhccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCH--HHHHHHHHcCCCEEEEcccccc
Q 021609 200 FTFAKKIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATP--ADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 200 ~~~~~~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~--~d~~~~l~~GadgV~VGsai~~ 257 (310)
...++.++. +.++|++ +.|||+ + +++.+++++|+.+|.+||.++.
T Consensus 146 ----------~~~ikal~~p~p~i~~~--ptGGV~-~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 146 ----------PGFVKAIKGPMPWTKIM--PTGGVE-PTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred ----------HHHHHHHhccCCCCeEE--eCCCCC-cchhcHHHHHhCCCEEEEEChhhcC
Confidence 223444443 2467888 899995 5 8999999999999999999985
No 134
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.04 E-value=1.5e-09 Score=100.46 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=43.7
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCC-HH
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD-PV 262 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~d-p~ 262 (310)
+++++++++.. ++||+ +.|||.+++|+.+++.+|||+|++||+++. | |.
T Consensus 230 ~~~v~~i~~~~~~~ipii--a~GGI~~~~da~~~l~~GAd~V~vg~a~~~--~GP~ 281 (289)
T cd02810 230 LRWVARLAARLQLDIPII--GVGGIDSGEDVLEMLMAGASAVQVATALMW--DGPD 281 (289)
T ss_pred HHHHHHHHHhcCCCCCEE--EECCCCCHHHHHHHHHcCccHheEcHHHHh--cCcc
Confidence 56778887776 89998 789999999999999999999999999997 5 65
No 135
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=99.03 E-value=1.1e-08 Score=89.27 Aligned_cols=156 Identities=19% Similarity=0.288 Sum_probs=106.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++++.++|...+ ++- .+. ....+.++++++.+ ++-+.+... -..++++.+.++||++++.+.
T Consensus 24 ~~~~al~~gGi~~i-EiT-----~~t------~~a~~~I~~l~~~~p~~~vGAGTV-~~~e~a~~a~~aGA~FivSP~-- 88 (196)
T PF01081_consen 24 PIAEALIEGGIRAI-EIT-----LRT------PNALEAIEALRKEFPDLLVGAGTV-LTAEQAEAAIAAGAQFIVSPG-- 88 (196)
T ss_dssp HHHHHHHHTT--EE-EEE-----TTS------TTHHHHHHHHHHHHTTSEEEEES---SHHHHHHHHHHT-SEEEESS--
T ss_pred HHHHHHHHCCCCEE-EEe-----cCC------ccHHHHHHHHHHHCCCCeeEEEec-cCHHHHHHHHHcCCCEEECCC--
Confidence 67889999998876 431 010 01157888887765 333333332 245889999999999998664
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
-.+++.+..++ .+++++.++.|+.|+..+.++|+++|++++...-|
T Consensus 89 ~~~~v~~~~~~--~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~G-------------------------------- 134 (196)
T PF01081_consen 89 FDPEVIEYARE--YGIPYIPGVMTPTEIMQALEAGADIVKLFPAGALG-------------------------------- 134 (196)
T ss_dssp --HHHHHHHHH--HTSEEEEEESSHHHHHHHHHTT-SEEEETTTTTTT--------------------------------
T ss_pred CCHHHHHHHHH--cCCcccCCcCCHHHHHHHHHCCCCEEEEecchhcC--------------------------------
Confidence 24566666654 57899999999999999999999999998653211
Q ss_pred ccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 205 KIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 205 ~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
....++.++. ..++|++ +.||| +++++.+++++|+.++.+||.+++
T Consensus 135 ----G~~~ik~l~~p~p~~~~~--ptGGV-~~~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 135 ----GPSYIKALRGPFPDLPFM--PTGGV-NPDNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp ----HHHHHHHHHTTTTT-EEE--EBSS---TTTHHHHHTSTTBSEEEESGGGS
T ss_pred ----cHHHHHHHhccCCCCeEE--EcCCC-CHHHHHHHHhCCCEEEEECchhcC
Confidence 1224455544 2467887 78999 689999999999999999999996
No 136
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.03 E-value=6.6e-10 Score=103.99 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=65.5
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhh
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCG 287 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~ 287 (310)
+.++.++.+.. ++||+ +.|||.|.+|+.+++.+||+.|+++|+++. .+|. ...++.+.+++|++.+++.++++.
T Consensus 228 l~~v~~~~~~~~~~ipIi--g~GGI~s~~da~e~i~aGA~~Vqv~ta~~~-~gp~-~~~~i~~~L~~~l~~~g~~si~e~ 303 (310)
T PRK02506 228 LANVRAFYQRLNPSIQII--GTGGVKTGRDAFEHILCGASMVQVGTALHK-EGPA-VFERLTKELKAIMAEKGYQSLEDF 303 (310)
T ss_pred HHHHHHHHHhcCCCCCEE--EECCCCCHHHHHHHHHcCCCHHhhhHHHHH-hChH-HHHHHHHHHHHHHHHhCCCCHHHH
Confidence 44566665554 69998 789999999999999999999999999997 3564 556699999999999999999999
Q ss_pred ccc
Q 021609 288 LGE 290 (310)
Q Consensus 288 ~~~ 290 (310)
.|.
T Consensus 304 ~G~ 306 (310)
T PRK02506 304 RGK 306 (310)
T ss_pred hCh
Confidence 993
No 137
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=99.03 E-value=3.6e-08 Score=86.84 Aligned_cols=190 Identities=24% Similarity=0.385 Sum_probs=127.7
Q ss_pred HHHHHHHHcCCcEEEecc----CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEE-E
Q 021609 46 EQARVAEEAGACAVMALE----RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYV-D 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~----~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~V-i 119 (310)
..|.+++++|+|+++.-| |-+++++..- ++-| ...++++++.+.+|+.++.--+ ...-+.++...|+++| +
T Consensus 38 ~dA~~leegG~DavivEN~gD~Pf~k~v~~~t-vaaM--a~iv~~v~r~v~iPvGvNVLrNd~vaA~~IA~a~gA~FIRV 114 (263)
T COG0434 38 RDAAALEEGGVDAVIVENYGDAPFLKDVGPET-VAAM--AVIVREVVREVSIPVGVNVLRNDAVAALAIAYAVGADFIRV 114 (263)
T ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCCChHH-HHHH--HHHHHHHHHhccccceeeeeccccHHHHHHHHhcCCCEEEE
Confidence 468899999999985545 4444332211 1111 3466777888899999986544 3455678889999999 2
Q ss_pred e--C-----C-C-CC--chhHHHHHHhcCCCCcEEEecC----------CHHHHHH--HHHhCCCEEEEcCCCCCcchHH
Q 021609 120 E--S-----E-V-LT--PADEENHINKHNFRIPFVCGCR----------NLGEALR--RIREGAAMIRTKGEAGTGNIIE 176 (310)
Q Consensus 120 ~--~-----~-~-~~--~~~~~~~i~~~~~~i~~~v~~~----------t~~ea~~--~~~~Gad~V~v~g~~~~~~~~~ 176 (310)
. + + . ++ ..++.++....+.++.++++++ +.+++.+ ....++|.|.+.|+. ||
T Consensus 115 N~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~-TG---- 189 (263)
T COG0434 115 NVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSR-TG---- 189 (263)
T ss_pred EeeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEeccc-CC----
Confidence 1 1 1 1 12 2355555544455677887765 4555544 234577888887763 12
Q ss_pred HHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 177 ~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
..++.+.++.+++..+.||+ ++.|+ +++++..+++. |||++|||.|-
T Consensus 190 -----------------------------~~~d~~el~~a~~~~~~pvl--vGSGv-~~eN~~~~l~~-adG~IvgT~lK 236 (263)
T COG0434 190 -----------------------------SPPDLEELKLAKEAVDTPVL--VGSGV-NPENIEELLKI-ADGVIVGTSLK 236 (263)
T ss_pred -----------------------------CCCCHHHHHHHHhccCCCEE--EecCC-CHHHHHHHHHH-cCceEEEEEEc
Confidence 24457778888888889998 68999 79999999998 99999999998
Q ss_pred cCC---CH--HHHHHHHHHHHhccC
Q 021609 257 KSG---DP--VKRAQAIVRAVTHYS 276 (310)
Q Consensus 257 ~a~---dp--~~~a~~l~~~i~~~~ 276 (310)
+.. || ...+++|++..++..
T Consensus 237 ~~G~~~n~VD~~Rv~~~v~~a~~~~ 261 (263)
T COG0434 237 KGGVTWNPVDLERVRRFVEAARRLR 261 (263)
T ss_pred cCCEecCccCHHHHHHHHHHHHHhc
Confidence 865 22 245566777766543
No 138
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=99.01 E-value=4.4e-08 Score=88.63 Aligned_cols=188 Identities=24% Similarity=0.381 Sum_probs=120.2
Q ss_pred HHHHHHHHcCCcEEEecc--CCccccccc-CCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-e
Q 021609 46 EQARVAEEAGACAVMALE--RVPADIRSQ-GGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD-E 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~--~~~~~~~~~-~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi-~ 120 (310)
+.|+.++++|+|+++.-| ..|-..+.. ...+.| ...+.++++.+++|+.++.-.+ .......+.++|+|+|- .
T Consensus 33 ~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM--~~i~~~v~~~~~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~ 110 (254)
T PF03437_consen 33 REAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAM--ARIAREVRREVSVPVGVNVLRNDPKAALAIAAATGADFIRVN 110 (254)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHH--HHHHHHHHHhCCCCEEeeeecCCCHHHHHHHHHhCCCEEEec
Confidence 568999999999984444 222111100 000001 2355567788899999986543 34556788889999993 1
Q ss_pred -------CC-C-CC--chhHHHHHHhcCCCCcEEEecC----------CHHHHHH-H-HHhCCCEEEEcCCCCCcchHHH
Q 021609 121 -------SE-V-LT--PADEENHINKHNFRIPFVCGCR----------NLGEALR-R-IREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 121 -------~~-~-~~--~~~~~~~i~~~~~~i~~~v~~~----------t~~ea~~-~-~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
++ . .+ ..++.++-+..+.++.++.+++ +.++..+ + ...++|.|.+.|.. ||
T Consensus 111 ~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~-TG----- 184 (254)
T PF03437_consen 111 VFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKA-TG----- 184 (254)
T ss_pred CEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcc-cC-----
Confidence 11 1 11 2344444333344566777665 3444433 3 35688988887642 11
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
..++.+.++++++..++||+ .++|+ |++++.+.+.. |||++|||.|-+
T Consensus 185 ----------------------------~~~~~~~l~~vr~~~~~PVl--vGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 185 ----------------------------EPPDPEKLKRVREAVPVPVL--VGSGV-TPENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred ----------------------------CCCCHHHHHHHHhcCCCCEE--EecCC-CHHHHHHHHHh-CCEEEEeeeeee
Confidence 24457778888888779998 58999 79999999977 999999999987
Q ss_pred CCC---H--HHHHHHHHHHHh
Q 021609 258 SGD---P--VKRAQAIVRAVT 273 (310)
Q Consensus 258 a~d---p--~~~a~~l~~~i~ 273 (310)
.++ | ...+++|.+.++
T Consensus 233 ~G~~~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 233 DGKWENPVDPERVRRFMEAVK 253 (254)
T ss_pred CCEeCCcCCHHHHHHHHHHhh
Confidence 542 3 246666777665
No 139
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.01 E-value=4.4e-08 Score=86.66 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=109.4
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccCcHHHHHHHHHcCCCEEEeCCC
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIGHFVEAQILEAIGIDYVDESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~ 123 (310)
+.++++.++|.+.+ +-++ ... -.+.++++++.+. +-+.+.... ..++++.+.++||++++.+.
T Consensus 31 ~i~~al~~~Gi~~iEitl~------~~~-------~~~~I~~l~~~~p~~~IGAGTVl-~~~~a~~a~~aGA~FivsP~- 95 (212)
T PRK05718 31 PLAKALVAGGLPVLEVTLR------TPA-------ALEAIRLIAKEVPEALIGAGTVL-NPEQLAQAIEAGAQFIVSPG- 95 (212)
T ss_pred HHHHHHHHcCCCEEEEecC------Ccc-------HHHHHHHHHHHCCCCEEEEeecc-CHHHHHHHHHcCCCEEECCC-
Confidence 46888889999976 2231 111 1678888887663 334434333 34789999999999997554
Q ss_pred CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhh
Q 021609 124 LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 124 ~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~ 203 (310)
+.+ ++.+...+ .+++++.++.|+.|+..+.++|+++|++++....
T Consensus 96 ~~~-~vi~~a~~--~~i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~~~-------------------------------- 140 (212)
T PRK05718 96 LTP-PLLKAAQE--GPIPLIPGVSTPSELMLGMELGLRTFKFFPAEAS-------------------------------- 140 (212)
T ss_pred CCH-HHHHHHHH--cCCCEeCCCCCHHHHHHHHHCCCCEEEEccchhc--------------------------------
Confidence 233 66666544 6788999999999999999999999999753210
Q ss_pred hccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 204 KKIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 204 ~~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+ ....++.++. ..++|++ +.||| +++++.+++++|+..++.||.+++
T Consensus 141 ---g-g~~~lk~l~~p~p~~~~~--ptGGV-~~~ni~~~l~ag~v~~vggs~L~~ 188 (212)
T PRK05718 141 ---G-GVKMLKALAGPFPDVRFC--PTGGI-SPANYRDYLALPNVLCIGGSWMVP 188 (212)
T ss_pred ---c-CHHHHHHHhccCCCCeEE--EeCCC-CHHHHHHHHhCCCEEEEEChHhCC
Confidence 0 1233444443 2458888 78999 699999999999777777888875
No 140
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.00 E-value=1.1e-07 Score=83.23 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=111.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++++.++|...+ ++- ... ...++.++++++.+. +-+.+... -..++++.+.++|+++++.+.
T Consensus 20 ~ia~al~~gGi~~i-Eit-------~~t----p~a~~~I~~l~~~~~~~~vGAGTV-l~~e~a~~ai~aGA~FivSP~-- 84 (201)
T PRK06015 20 PLARALAAGGLPAI-EIT-------LRT----PAALDAIRAVAAEVEEAIVGAGTI-LNAKQFEDAAKAGSRFIVSPG-- 84 (201)
T ss_pred HHHHHHHHCCCCEE-EEe-------CCC----ccHHHHHHHHHHHCCCCEEeeEeC-cCHHHHHHHHHcCCCEEECCC--
Confidence 57888899999976 431 000 111678888887663 22332222 245889999999999997554
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
-..++.+..++ .+++++.++.|+.|+..+.++|+++|++++...-+
T Consensus 85 ~~~~vi~~a~~--~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~G-------------------------------- 130 (201)
T PRK06015 85 TTQELLAAAND--SDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAG-------------------------------- 130 (201)
T ss_pred CCHHHHHHHHH--cCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhC--------------------------------
Confidence 24556666543 68999999999999999999999999998642110
Q ss_pred ccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 205 KIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 205 ~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
...+++.++. ..++|++ +.||| +++++.+++++|+..++.||.++.
T Consensus 131 ----G~~yikal~~plp~~~l~--ptGGV-~~~n~~~~l~ag~~~~~ggs~l~~ 177 (201)
T PRK06015 131 ----GAAFLKALSSPLAGTFFC--PTGGI-SLKNARDYLSLPNVVCVGGSWVAP 177 (201)
T ss_pred ----CHHHHHHHHhhCCCCcEE--ecCCC-CHHHHHHHHhCCCeEEEEchhhCC
Confidence 0123444443 2468898 89999 699999999999888888999985
No 141
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.99 E-value=5e-09 Score=97.38 Aligned_cols=62 Identities=23% Similarity=0.265 Sum_probs=49.4
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
+..++++++.. ++||+ ++|||.|.+|+.+++.+|||+|+++|+++. .+|+. .+++.+.+++|
T Consensus 230 l~~v~~~~~~~~~~ipIi--g~GGI~s~~da~e~l~aGA~~Vqv~ta~~~-~gp~~-~~~i~~~L~~~ 293 (294)
T cd04741 230 LGNVRTFRRLLPSEIQII--GVGGVLDGRGAFRMRLAGASAVQVGTALGK-EGPKV-FARIEKELEDI 293 (294)
T ss_pred HHHHHHHHHhcCCCCCEE--EeCCCCCHHHHHHHHHcCCCceeEchhhhh-cCchH-HHHHHHHHHhh
Confidence 45667776665 59998 889999999999999999999999999995 36763 34466666654
No 142
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.97 E-value=6.2e-09 Score=102.47 Aligned_cols=133 Identities=20% Similarity=0.273 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCCEEE--eCCC--CCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 104 FVEAQILEAIGIDYVD--ESEV--LTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi--~~~~--~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.+.++.+.++|+|.+. .++. ....+.++.++...++++++++ +.|.+.++.+.++|+|+|.+.+..++ +|++
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs--~~tt- 303 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGA--MCTT- 303 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCc--cccC-
Confidence 4778899999999995 4443 2344566677665568999999 99999999999999999998765432 2211
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
+.+...... ...+..+..+..++ .++||| |+|||+++.|+.+++.+||++|++|+.|...
T Consensus 304 ----------r~~~~~g~~-------~~~a~~~~~~~~~~-~~~~vi--adGgi~~~~di~kala~GA~~vm~g~~~ag~ 363 (475)
T TIGR01303 304 ----------RMMTGVGRP-------QFSAVLECAAEARK-LGGHVW--ADGGVRHPRDVALALAAGASNVMVGSWFAGT 363 (475)
T ss_pred ----------ccccCCCCc-------hHHHHHHHHHHHHH-cCCcEE--EeCCCCCHHHHHHHHHcCCCEEeechhhccc
Confidence 111111110 01222344443444 379998 8999999999999999999999999999875
Q ss_pred C
Q 021609 259 G 259 (310)
Q Consensus 259 ~ 259 (310)
+
T Consensus 364 ~ 364 (475)
T TIGR01303 364 Y 364 (475)
T ss_pred c
Confidence 3
No 143
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.96 E-value=1.3e-08 Score=100.01 Aligned_cols=129 Identities=21% Similarity=0.278 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCCCEEE--eCCC--CCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHH
Q 021609 104 FVEAQILEAIGIDYVD--ESEV--LTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEA 177 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi--~~~~--~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~ 177 (310)
.+.++.+.++|+|.+. .++. ....+.++.++++.+++++++ .+.|.++++.+.++|+|+|.+. |++++ +.+
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~---~~t 302 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSI---CTT 302 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcC---Ccc
Confidence 4778899999999995 3322 334455666666556788777 6899999999999999999875 23221 100
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh---hcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK---QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~---~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
+.+... ..+.+..+.++. +..++||+ |.|||+++.|+.+++.+||++|++|+.
T Consensus 303 -----------~~~~~~-----------g~p~~~~i~~~~~~~~~~~vpvi--adGGi~~~~di~kAla~GA~~V~~G~~ 358 (450)
T TIGR01302 303 -----------RIVAGV-----------GVPQITAVYDVAEYAAQSGIPVI--ADGGIRYSGDIVKALAAGADAVMLGSL 358 (450)
T ss_pred -----------ceecCC-----------CccHHHHHHHHHHHHhhcCCeEE--EeCCCCCHHHHHHHHHcCCCEEEECch
Confidence 111110 112234444443 23578998 899999999999999999999999999
Q ss_pred cccCC
Q 021609 255 VFKSG 259 (310)
Q Consensus 255 i~~a~ 259 (310)
|...+
T Consensus 359 ~a~~~ 363 (450)
T TIGR01302 359 LAGTT 363 (450)
T ss_pred hhcCC
Confidence 99854
No 144
>PLN02826 dihydroorotate dehydrogenase
Probab=98.95 E-value=5.2e-09 Score=101.05 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=65.9
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhh
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCG 287 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~ 287 (310)
.+.+.++.+.. ++||+ +.|||.|.+|+.+.+.+||+.|+++|+++. ..| ...+++.+.+.++++.+++.++++.
T Consensus 328 l~~v~~l~~~~~~~ipII--gvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~-~Gp-~~i~~I~~eL~~~l~~~G~~si~e~ 403 (409)
T PLN02826 328 TEVLREMYRLTRGKIPLV--GCGGVSSGEDAYKKIRAGASLVQLYTAFAY-EGP-ALIPRIKAELAACLERDGFKSIQEA 403 (409)
T ss_pred HHHHHHHHHHhCCCCcEE--EECCCCCHHHHHHHHHhCCCeeeecHHHHh-cCH-HHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 45666666554 68998 789999999999999999999999999987 346 4667799999999999999999999
Q ss_pred cccc
Q 021609 288 LGEA 291 (310)
Q Consensus 288 ~~~~ 291 (310)
.|.+
T Consensus 404 iG~~ 407 (409)
T PLN02826 404 VGAD 407 (409)
T ss_pred hCcC
Confidence 8854
No 145
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.95 E-value=6.2e-08 Score=90.49 Aligned_cols=191 Identities=16% Similarity=0.166 Sum_probs=120.3
Q ss_pred cceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHH-HHHHHhh--cCcceeecc
Q 021609 23 PFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQL-IKEIKQS--VTIPVMAKA 99 (310)
Q Consensus 23 ~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~-i~~i~~~--~~iPv~vk~ 99 (310)
.+....|++- --|....+.++|+.+.+.|.-.+ .+ + + +++. ...+++. ..+++.+..
T Consensus 30 ~~~l~~P~~i----nAM~t~in~~LA~~a~~~G~~~i-~h-------K-~-------~~E~~~sfvrk~k~~~L~v~~Sv 89 (321)
T TIGR01306 30 KHKFKLPVVP----ANMQTIIDEKLAEQLAENGYFYI-MH-------R-F-------DEESRIPFIKDMQERGLFASISV 89 (321)
T ss_pred CcEecCcEEe----eccchhhhHHHHHHHHHcCCEEE-Ee-------c-C-------CHHHHHHHHHhccccccEEEEEc
Confidence 4455566665 11233556689999999886654 22 1 1 1222 2223322 134444333
Q ss_pred ccC--cHHHHHHHHHcC--CCEEE--eCCCC--CchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEc-CCC
Q 021609 100 RIG--HFVEAQILEAIG--IDYVD--ESEVL--TPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTK-GEA 169 (310)
Q Consensus 100 ~~~--~~~~a~~~~~aG--ad~Vi--~~~~~--~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~-g~~ 169 (310)
... ..+.+..+.++| +|.|. .++.- ...+..+.+++..+...++.+ +.|.+.++.+.++|+|.|.++ |++
T Consensus 90 G~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G 169 (321)
T TIGR01306 90 GVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPG 169 (321)
T ss_pred CCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCC
Confidence 332 246778888999 79884 44432 244556666664455657776 889999999999999999987 332
Q ss_pred CCcchHHHHHHHHhhccceEeecccChhHHHHhhhccC-CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 170 GTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
.+ +.+ ++.... ... +.+..+.++++..++||+ +.|||++..|+.+++.+|||+
T Consensus 170 ~~---~~t-----------r~~~g~----------g~~~~~l~ai~ev~~a~~~pVI--adGGIr~~~Di~KALa~GAd~ 223 (321)
T TIGR01306 170 KV---CIT-----------KIKTGF----------GTGGWQLAALRWCAKAARKPII--ADGGIRTHGDIAKSIRFGASM 223 (321)
T ss_pred cc---ccc-----------eeeecc----------CCCchHHHHHHHHHHhcCCeEE--EECCcCcHHHHHHHHHcCCCE
Confidence 21 100 111110 111 123456667776789998 889999999999999999999
Q ss_pred EEEccccccCC
Q 021609 249 VFVGSGVFKSG 259 (310)
Q Consensus 249 V~VGsai~~a~ 259 (310)
|++|+.|...+
T Consensus 224 Vmig~~~ag~~ 234 (321)
T TIGR01306 224 VMIGSLFAGHE 234 (321)
T ss_pred EeechhhcCcc
Confidence 99999998754
No 146
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=98.93 E-value=8.3e-09 Score=98.05 Aligned_cols=114 Identities=20% Similarity=0.193 Sum_probs=79.3
Q ss_pred cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC--CCC
Q 021609 146 CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLP 223 (310)
Q Consensus 146 ~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iP 223 (310)
+.+.++++++.++|+|.|.+.++++.. +. ...++++.+.++++.. ++|
T Consensus 236 v~~~eda~~a~~~Gvd~I~VS~HGGrq------------------~~------------~~~a~~~~L~ei~~av~~~i~ 285 (367)
T TIGR02708 236 PQCPEDADRALKAGASGIWVTNHGGRQ------------------LD------------GGPAAFDSLQEVAEAVDKRVP 285 (367)
T ss_pred CCCHHHHHHHHHcCcCEEEECCcCccC------------------CC------------CCCcHHHHHHHHHHHhCCCCc
Confidence 556678888888888877666654311 00 1234467777776654 599
Q ss_pred EEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCccch
Q 021609 224 VVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 224 Vi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (310)
|+ ++|||++..|+.+++.+|||+|++|+.++.. .+..=.+.+ .+.+..+.+++...|-.+|.++++
T Consensus 286 vi--~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~-----la~~G~~gv-----~~~l~~l~~El~~~M~l~G~~~i~ 351 (367)
T TIGR02708 286 IV--FDSGVRRGQHVFKALASGADLVALGRPVIYG-----LALGGSQGA-----RQVFEYLNKELKRVMQLTGTQTIE 351 (367)
T ss_pred EE--eeCCcCCHHHHHHHHHcCCCEEEEcHHHHHH-----HHhcCHHHH-----HHHHHHHHHHHHHHHHHhCCCCHH
Confidence 98 7999999999999999999999999988751 111001111 233556778888888888888765
No 147
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.93 E-value=1.9e-07 Score=85.67 Aligned_cols=69 Identities=32% Similarity=0.386 Sum_probs=56.0
Q ss_pred HHHHHHhhcCCCCEEEeCCCCCC--CHHHHHHH----HHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhh
Q 021609 211 DLVMQTKQLGRLPVVHFAAGGVA--TPADAAMM----MQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVL 281 (310)
Q Consensus 211 ~~i~~i~~~~~iPVi~iA~GGI~--t~~d~~~~----l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~ 281 (310)
+.++++.+..++||+ ++|||+ |.+++.+. +++||+|+.+|++|++++||...++.|...+++....+..
T Consensus 186 ~~l~~~~~~~~ipV~--a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~~v~~~~~~~ea 260 (267)
T PRK07226 186 ESFREVVEGCPVPVV--IAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAISAVVHEGASVEEA 260 (267)
T ss_pred HHHHHHHHhCCCCEE--EEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHHHHhCCCCHHHH
Confidence 345555554579998 679998 76666555 4999999999999999999999999999999988875543
No 148
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.93 E-value=1.7e-08 Score=92.16 Aligned_cols=68 Identities=31% Similarity=0.412 Sum_probs=56.6
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCC--C----HHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChh
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVA--T----PADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPE 279 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~--t----~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~ 279 (310)
.+.++++.+..++||+ +.|||+ | .+++.+++++|++|+.+|++|++++||...+++|...+++....+
T Consensus 181 ~~~l~~~~~~~~iPVv--a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~l~~~i~~~~~~~ 254 (258)
T TIGR01949 181 IDSFRDVVKGCPAPVV--VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKAVCKIVHENADVE 254 (258)
T ss_pred HHHHHHHHHhCCCcEE--EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHHHHHHHhCCCCHH
Confidence 4456666665679998 569998 4 666777779999999999999999999999999999998887654
No 149
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=4e-07 Score=80.05 Aligned_cols=183 Identities=16% Similarity=0.233 Sum_probs=115.8
Q ss_pred HHHHHHHHcCCcEEEecc-----CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE
Q 021609 46 EQARVAEEAGACAVMALE-----RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-----~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi 119 (310)
+.+++++++|++++ .++ -+|+ -.+| +..++.+++.+..|+-+.+-+. .+..++.+.++|||.+.
T Consensus 20 ~el~~~~~agad~i-H~DVMDghFVPN--iTfG-------p~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It 89 (220)
T COG0036 20 EELKALEAAGADLI-HIDVMDGHFVPN--ITFG-------PPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIIT 89 (220)
T ss_pred HHHHHHHHcCCCEE-EEeccCCCcCCC--cccC-------HHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEE
Confidence 78899999999998 443 1222 1234 7899999998899998876554 35567899999999995
Q ss_pred -eCC-CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEc--CCCCCcchHHHHHHHHhhccceEeecccC
Q 021609 120 -ESE-VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTK--GEAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 120 -~~~-~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~--g~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
... ........+.+++.+...-+.....|+-+...-.-.-+|+|.+. +++++|- ..+
T Consensus 90 ~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ---------------~Fi---- 150 (220)
T COG0036 90 FHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQ---------------KFI---- 150 (220)
T ss_pred EEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCccc---------------ccC----
Confidence 333 33466777777765444444445667777766554557765433 2333331 000
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhcCC--CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQLGR--LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~~~--iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
...++-++++++... -++.+-..||| +.+++.++.++|||.+++||++++.+|-....+.+.
T Consensus 151 -----------~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~ 214 (220)
T COG0036 151 -----------PEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADDYKATIRELR 214 (220)
T ss_pred -----------HHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHH
Confidence 111222333332211 03322258999 699999999999999999999999777333434343
No 150
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=98.92 E-value=7.4e-08 Score=91.25 Aligned_cols=120 Identities=17% Similarity=0.289 Sum_probs=80.7
Q ss_pred CCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh
Q 021609 139 RIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK 217 (310)
Q Consensus 139 ~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~ 217 (310)
++++++ ++.+.++++++.+.|+|.|.+.+++++.. . ...++.+.+.++.
T Consensus 213 ~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~------------------d------------~~~~~~~~L~~i~ 262 (344)
T cd02922 213 KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQL------------------D------------TAPAPIEVLLEIR 262 (344)
T ss_pred CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccC------------------C------------CCCCHHHHHHHHH
Confidence 455444 58899999999999999999888654320 0 0122333344443
Q ss_pred hc-----CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHH-HHHHHHHHHhccCChhhhhhhhhhcccc
Q 021609 218 QL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVK-RAQAIVRAVTHYSDPEVLAEVSCGLGEA 291 (310)
Q Consensus 218 ~~-----~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~-~a~~l~~~i~~~~~~~~~~~~~~~~~~~ 291 (310)
+. .++||+ ++|||++..|+.+++.+||++|.+|++++.+ +.. -.+.+ .+-+..+..++...
T Consensus 263 ~~~~~~~~~~~vi--~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~--l~~~G~~gv---------~~~l~~l~~EL~~~ 329 (344)
T cd02922 263 KHCPEVFDKIEVY--VDGGVRRGTDVLKALCLGAKAVGLGRPFLYA--LSAYGEEGV---------EKAIQILKDEIETT 329 (344)
T ss_pred HHHHHhCCCceEE--EeCCCCCHHHHHHHHHcCCCEEEECHHHHHH--HhhccHHHH---------HHHHHHHHHHHHHH
Confidence 31 258998 7899999999999999999999999999962 211 00111 12344566677777
Q ss_pred hhcccCccch
Q 021609 292 MVGLNLSDHK 301 (310)
Q Consensus 292 ~~~~~~~~~~ 301 (310)
|-.+|.++++
T Consensus 330 m~l~G~~~i~ 339 (344)
T cd02922 330 MRLLGVTSLD 339 (344)
T ss_pred HHHhCCCCHH
Confidence 7777766543
No 151
>PRK08005 epimerase; Validated
Probab=98.92 E-value=1.8e-07 Score=82.49 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=112.4
Q ss_pred HHHHHHHHcCCcEE-Eec-cC--CcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEe
Q 021609 46 EQARVAEEAGACAV-MAL-ER--VPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDE 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~--~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~ 120 (310)
+.+++++++|++++ +|+ +. .|. -.++ ++.++.+++.++.|+-+.+-.. ....++.+.++|+|.+..
T Consensus 17 ~el~~l~~~g~d~lHiDvMDG~FVPN--~tfG-------~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~ 87 (210)
T PRK08005 17 EALTALHDAPLGSLHLDIEDTSFINN--ITFG-------MKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFI 87 (210)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCc--cccC-------HHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 67888999999998 443 11 121 1223 7899999988889988776543 456678899999999952
Q ss_pred C-CC-CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcC--CCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 121 S-EV-LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 121 ~-~~-~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
+ .. ..+....+.+++.+...-+.+...|.-+...-.-.-+|+|.+.. +++.|- ..
T Consensus 88 H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ---------------~f------ 146 (210)
T PRK08005 88 HAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQ---------------QF------ 146 (210)
T ss_pred cccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccc---------------ee------
Confidence 2 22 23456667776655444444445455444332222466654332 232221 00
Q ss_pred hHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
....++-++++++.. +..+- ..||| +.+++.++.++|||.+++||++++++|+....+.+
T Consensus 147 ---------~~~~~~KI~~l~~~~~~~~I~--VDGGI-~~~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~ 207 (210)
T PRK08005 147 ---------IAAMCEKVSQSREHFPAAECW--ADGGI-TLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQF 207 (210)
T ss_pred ---------cHHHHHHHHHHHHhcccCCEE--EECCC-CHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHH
Confidence 011133344444321 23455 57999 69999999999999999999999888876665544
No 152
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.90 E-value=5.1e-09 Score=98.73 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=43.4
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
++.++++++.. ++||+ ++|||.|++|+.+++.+|||+|++||+++. ++|.
T Consensus 267 l~~v~~l~~~~~~~ipIi--~~GGI~t~~da~e~l~aGAd~V~vg~~~~~-~gP~ 318 (327)
T cd04738 267 TEVLRELYKLTGGKIPII--GVGGISSGEDAYEKIRAGASLVQLYTGLVY-EGPG 318 (327)
T ss_pred HHHHHHHHHHhCCCCcEE--EECCCCCHHHHHHHHHcCCCHHhccHHHHh-hCcH
Confidence 56777787766 79998 789999999999999999999999999986 3576
No 153
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.89 E-value=3.5e-07 Score=82.86 Aligned_cols=189 Identities=22% Similarity=0.305 Sum_probs=118.1
Q ss_pred HHHHHHHHcCCcEEEecc--CCccccccc-CCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEE-E-
Q 021609 46 EQARVAEEAGACAVMALE--RVPADIRSQ-GGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYV-D- 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~--~~~~~~~~~-~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~V-i- 119 (310)
+.|++++++|+|+++.-| ..|...+.. ...+.| ...+.++++.+.+|+.++.-.+ ...-...+.++|+|+| +
T Consensus 32 ~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m--~~i~~~v~~~~~~p~GvnvL~nd~~aal~iA~a~ga~FIRv~ 109 (257)
T TIGR00259 32 KDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAM--AVIAGQLKSDVSIPLGINVLRNDAVAALAIAMAVGAKFIRVN 109 (257)
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHH--HHHHHHHHHhcCCCeeeeeecCCCHHHHHHHHHhCCCEEEEc
Confidence 568899999999985444 222211000 000001 2355667788899998875543 3445678888999999 2
Q ss_pred ---eC---C-CC---CchhHHHHHHhcCCCCcEEEecC----------CHHHHHH-HHHhC-CCEEEEcCCCCCcchHHH
Q 021609 120 ---ES---E-VL---TPADEENHINKHNFRIPFVCGCR----------NLGEALR-RIREG-AAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 120 ---~~---~-~~---~~~~~~~~i~~~~~~i~~~v~~~----------t~~ea~~-~~~~G-ad~V~v~g~~~~~~~~~~ 177 (310)
.+ + .+ ...++.++-+..+.++.++.+++ +.+|..+ +...+ +|.|.+.|.. ||
T Consensus 110 ~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~-TG----- 183 (257)
T TIGR00259 110 VLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKT-TG----- 183 (257)
T ss_pred cEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCC-CC-----
Confidence 11 1 11 13345444444334466666543 4455444 44444 8999888753 22
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
...+++.++.+++. .+.|++ .+||+ +++++.++++. |||+.|||.|-
T Consensus 184 ----------------------------~~~d~~~l~~vr~~~~~~Pvl--lggGv-t~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 184 ----------------------------TEVDLELLKLAKETVKDTPVL--AGSGV-NLENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred ----------------------------CCCCHHHHHHHHhccCCCeEE--EECCC-CHHHHHHHHhh-CCEEEECCCcc
Confidence 23457778888763 468998 58999 79999999987 99999999987
Q ss_pred cCC------CHHHHHHHHHHHHhcc
Q 021609 257 KSG------DPVKRAQAIVRAVTHY 275 (310)
Q Consensus 257 ~a~------dp~~~a~~l~~~i~~~ 275 (310)
+.+ || ...++|.+.+++.
T Consensus 232 ~~G~~~n~~D~-~rV~~Fm~~v~~~ 255 (257)
T TIGR00259 232 KDGVFNNFVDQ-ARVSQFVEKVAHG 255 (257)
T ss_pred cCCccCCCcCH-HHHHHHHHHHHHh
Confidence 533 33 3556677776544
No 154
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.88 E-value=3.6e-08 Score=97.78 Aligned_cols=130 Identities=18% Similarity=0.233 Sum_probs=90.3
Q ss_pred HHHHHHHHHcCCCEEEe--CCC--CCchhHHHHHHhcCCCCcEE-EecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 104 FVEAQILEAIGIDYVDE--SEV--LTPADEENHINKHNFRIPFV-CGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~--~~~--~~~~~~~~~i~~~~~~i~~~-v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.+.++.+.++|+|.+.. ++. ....+..+.++++.++++++ -++.|.++++.+.++|+|+|.+....+ .++.+
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~g--s~~~~- 306 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPG--SICTT- 306 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCC--ccccc-
Confidence 57788999999998752 222 23445566666554576655 458999999999999999998753222 11110
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccc
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai 255 (310)
+.+... ..+.+..+.++.+. .++||| ++|||+++.|+.+++.+|||+|++|++|
T Consensus 307 ----------r~~~~~-----------g~p~~~~~~~~~~~~~~~~~~vi--adGGi~~~~di~kAla~GA~~v~~G~~~ 363 (486)
T PRK05567 307 ----------RIVAGV-----------GVPQITAIADAAEAAKKYGIPVI--ADGGIRYSGDIAKALAAGASAVMLGSML 363 (486)
T ss_pred ----------eeecCC-----------CcCHHHHHHHHHHHhccCCCeEE--EcCCCCCHHHHHHHHHhCCCEEEECccc
Confidence 111111 12345566555442 468998 8999999999999999999999999999
Q ss_pred ccCC
Q 021609 256 FKSG 259 (310)
Q Consensus 256 ~~a~ 259 (310)
.+..
T Consensus 364 a~~~ 367 (486)
T PRK05567 364 AGTE 367 (486)
T ss_pred cccc
Confidence 9853
No 155
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.86 E-value=2.5e-08 Score=94.62 Aligned_cols=131 Identities=19% Similarity=0.203 Sum_probs=94.9
Q ss_pred HHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCC
Q 021609 129 EENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAA 208 (310)
Q Consensus 129 ~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
.++.+++.-....++-++.+.++++++.+.|+|.|.+.+++++.- + ...+
T Consensus 227 ~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrql---------------------d---------~~~~ 276 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQL---------------------D---------DAIA 276 (361)
T ss_pred HHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCC---------------------c---------CCcc
Confidence 445555533345566679999999999999999999988765321 0 1234
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGL 288 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~ 288 (310)
+.+.+.++.+..++||+ ++|||++..|+.+++.+||++|++|++++. ..+..=.+.+ .+.+..+.+++
T Consensus 277 ~~~~L~ei~~~~~~~vi--~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~-----~la~~G~~gv-----~~~l~~l~~el 344 (361)
T cd04736 277 PIEALAEIVAATYKPVL--IDSGIRRGSDIVKALALGANAVLLGRATLY-----GLAARGEAGV-----SEVLRLLKEEI 344 (361)
T ss_pred HHHHHHHHHHHhCCeEE--EeCCCCCHHHHHHHHHcCCCEEEECHHHHH-----HHHhcCHHHH-----HHHHHHHHHHH
Confidence 57777777776679998 789999999999999999999999999884 1111011111 23456788888
Q ss_pred ccchhcccCccch
Q 021609 289 GEAMVGLNLSDHK 301 (310)
Q Consensus 289 ~~~~~~~~~~~~~ 301 (310)
...|-.+|.++++
T Consensus 345 ~~~m~l~G~~~i~ 357 (361)
T cd04736 345 DRTLALIGCPDIA 357 (361)
T ss_pred HHHHHHhCCCCHH
Confidence 8899988887764
No 156
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=98.86 E-value=6.2e-07 Score=80.00 Aligned_cols=184 Identities=16% Similarity=0.077 Sum_probs=110.5
Q ss_pred HHHHHHHHcCCcEE-Eec-cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEeC-
Q 021609 46 EQARVAEEAGACAV-MAL-ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDES- 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~~- 121 (310)
+..++++++|++++ +|+ +......-.++ +..++.+++ +.|+-+.+-+. ....++.+.++|+|.+..+
T Consensus 29 ~el~~l~~~g~d~lHiDVMDG~FVPNitfG-------p~~i~~i~~--~~~~DvHLMv~~P~~~i~~~~~aGad~It~H~ 99 (228)
T PRK08091 29 ETLTTLSENQLRLLHFDIADGQFSPFFTVG-------AIAIKQFPT--HCFKDVHLMVRDQFEVAKACVAAGADIVTLQV 99 (228)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccC-------HHHHHHhCC--CCCEEEEeccCCHHHHHHHHHHhCCCEEEEcc
Confidence 67889999999998 443 11111111223 678888874 67877765443 4566789999999999522
Q ss_pred CC-CCchhHHHHHHhcCC--CCcEEEecCCHHHHHH-HHHhCCCEEEEc--CCCCCcchHHHHHHHHhhccceEeecccC
Q 021609 122 EV-LTPADEENHINKHNF--RIPFVCGCRNLGEALR-RIREGAAMIRTK--GEAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 122 ~~-~~~~~~~~~i~~~~~--~i~~~v~~~t~~ea~~-~~~~Gad~V~v~--g~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
.. ..+....+.+++.+. ..-+...+.|.-+... ... -+|+|.+. .+++.|-. .
T Consensus 100 Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~-~vD~VLiMtV~PGfgGQ~---------------f----- 158 (228)
T PRK08091 100 EQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLD-QIDLIQILTLDPRTGTKA---------------P----- 158 (228)
T ss_pred cCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHh-hcCEEEEEEECCCCCCcc---------------c-----
Confidence 22 234566677776655 3333334445433333 333 46765433 22332210 0
Q ss_pred hhHHHHhhhccCCcHHHHHHHhh---c--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQ---L--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~---~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
....++-++++++ . .++.+- ..||| +.+++.++.++|||.+++||++++++|+....+.+++
T Consensus 159 ----------~~~~l~KI~~lr~~~~~~~~~~~Ie--VDGGI-~~~ti~~l~~aGaD~~V~GSalF~~~d~~~~i~~l~~ 225 (228)
T PRK08091 159 ----------SDLILDRVIQVENRLGNRRVEKLIS--IDGSM-TLELASYLKQHQIDWVVSGSALFSQGELKTTLKEWKS 225 (228)
T ss_pred ----------cHHHHHHHHHHHHHHHhcCCCceEE--EECCC-CHHHHHHHHHCCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 0011222222222 1 233444 57999 6999999999999999999999998888777777765
Q ss_pred HH
Q 021609 271 AV 272 (310)
Q Consensus 271 ~i 272 (310)
.+
T Consensus 226 ~~ 227 (228)
T PRK08091 226 SL 227 (228)
T ss_pred hh
Confidence 43
No 157
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.85 E-value=3e-08 Score=93.98 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=83.2
Q ss_pred CCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh
Q 021609 139 RIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK 217 (310)
Q Consensus 139 ~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~ 217 (310)
++++++- +.+.++++++.+.|+|.|.+.++++.. +. ....+++.+.+++
T Consensus 221 ~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~------------------ld------------~~~~~~~~l~~i~ 270 (351)
T cd04737 221 GLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQ------------------LD------------GGPASFDSLPEIA 270 (351)
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCcc------------------CC------------CCchHHHHHHHHH
Confidence 4566654 778899999999999999996654311 00 1123456667776
Q ss_pred hcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcc
Q 021609 218 QLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGL 295 (310)
Q Consensus 218 ~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 295 (310)
+.. ++||+ ++|||++..|+.+++.+||++|++|++++.. .+..=.+.+ .+.+..+..++.+.|-.+
T Consensus 271 ~a~~~~i~vi--~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~-----la~~G~~gv-----~~~l~~l~~El~~~m~l~ 338 (351)
T cd04737 271 EAVNHRVPII--FDSGVRRGEHVFKALASGADAVAVGRPVLYG-----LALGGAQGV-----ASVLEHLNKELKIVMQLA 338 (351)
T ss_pred HHhCCCCeEE--EECCCCCHHHHHHHHHcCCCEEEECHHHHHH-----HhhchHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 554 69998 7899999999999999999999999988851 111001111 233456677777777777
Q ss_pred cCccch
Q 021609 296 NLSDHK 301 (310)
Q Consensus 296 ~~~~~~ 301 (310)
|.++++
T Consensus 339 G~~~i~ 344 (351)
T cd04737 339 GTRTIE 344 (351)
T ss_pred CCCCHH
Confidence 776653
No 158
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=98.84 E-value=8.8e-07 Score=79.23 Aligned_cols=185 Identities=16% Similarity=0.215 Sum_probs=112.4
Q ss_pred HHHHHHHHcCCcEE-Eec-cC--CcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-
Q 021609 46 EQARVAEEAGACAV-MAL-ER--VPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD- 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~--~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi- 119 (310)
+..+.+++ |++++ +|+ +. +|. -.++ +..++.+++.+++|+-+.+-.. ....++.+.++|+|.+.
T Consensus 19 ~el~~l~~-g~d~lH~DiMDG~FVPN--~tfg-------~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~ 88 (229)
T PRK09722 19 EQIEFLNS-KADYFHIDIMDGHFVPN--LTLS-------PFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITL 88 (229)
T ss_pred HHHHHHHh-CCCEEEEecccCccCCC--cccC-------HHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEE
Confidence 45667777 89998 443 11 121 1233 7899999988889988765443 45667889999999995
Q ss_pred eCCCC--CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcC--CCCCcchHHHHHHHHhhccceEeecccC
Q 021609 120 ESEVL--TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 120 ~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
..... .+....+.+++.+...-+...+.|.-+...-.-.-+|+|-+.. ++++|-. .
T Consensus 89 H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~---------------f----- 148 (229)
T PRK09722 89 HPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQP---------------F----- 148 (229)
T ss_pred CccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchh---------------c-----
Confidence 33322 3556667776655544445555565454443323467654332 2332210 0
Q ss_pred hhHHHHhhhccCCcHHHHHHHhh---cC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc-cccc-CCCHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQ---LG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS-GVFK-SGDPVKRAQAI 268 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~---~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs-ai~~-a~dp~~~a~~l 268 (310)
....++-++++++ .- ++.+- ..||| +.+++.++.++|||.+++|| ++++ ++|+....+.+
T Consensus 149 ----------i~~~l~KI~~lr~~~~~~~~~~~Ie--VDGGI-~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l 215 (229)
T PRK09722 149 ----------IPEMLDKIAELKALRERNGLEYLIE--VDGSC-NQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIM 215 (229)
T ss_pred ----------cHHHHHHHHHHHHHHHhcCCCeEEE--EECCC-CHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHH
Confidence 0011222222222 11 33344 57999 59999999999999999995 5987 56888787777
Q ss_pred HHHHh
Q 021609 269 VRAVT 273 (310)
Q Consensus 269 ~~~i~ 273 (310)
++.++
T Consensus 216 ~~~~~ 220 (229)
T PRK09722 216 TAQIE 220 (229)
T ss_pred HHHHH
Confidence 76554
No 159
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.83 E-value=7.6e-08 Score=95.46 Aligned_cols=128 Identities=19% Similarity=0.253 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCCCEEE--eCCCCC--chhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHH
Q 021609 104 FVEAQILEAIGIDYVD--ESEVLT--PADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEA 177 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi--~~~~~~--~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~ 177 (310)
.+.++.+.++|+|.|. .++.-+ ..+.++.+++..+++++++ .+.|.++++.+.++|+|+|.+. |++.+ +.+
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~---~~t 319 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSI---CIT 319 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcc---ccc
Confidence 3678899999999995 333322 2356677766556788877 5889999999999999999874 22211 100
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccC-CcHHHHHH---HhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQ---TKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~---i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
+.+. +.+ +.+..+.. +.+..++|++ ++|||+++.|+.+++.+|||+|++|+
T Consensus 320 -----------~~~~------------~~g~p~~~ai~~~~~~~~~~~v~vI--adGGi~~~~di~kAla~GA~~Vm~G~ 374 (495)
T PTZ00314 320 -----------QEVC------------AVGRPQASAVYHVARYARERGVPCI--ADGGIKNSGDICKALALGADCVMLGS 374 (495)
T ss_pred -----------chhc------------cCCCChHHHHHHHHHHHhhcCCeEE--ecCCCCCHHHHHHHHHcCCCEEEECc
Confidence 0111 112 22333333 3333578998 89999999999999999999999999
Q ss_pred ccccCC
Q 021609 254 GVFKSG 259 (310)
Q Consensus 254 ai~~a~ 259 (310)
.|....
T Consensus 375 ~~a~~~ 380 (495)
T PTZ00314 375 LLAGTE 380 (495)
T ss_pred hhcccc
Confidence 999843
No 160
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=7e-07 Score=78.09 Aligned_cols=155 Identities=17% Similarity=0.240 Sum_probs=110.7
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc-CcHHHHHHHHHcCCCEEEeCCC
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI-GHFVEAQILEAIGIDYVDESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~-~~~~~a~~~~~aGad~Vi~~~~ 123 (310)
.+++++.++|.+.+ +-+| . ..-.+.|+.+++.+. -+++.-.. -+-++++.+.++|+++++.+..
T Consensus 29 ~~a~Ali~gGi~~IEITl~-------s------p~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~ 94 (211)
T COG0800 29 PLAKALIEGGIPAIEITLR-------T------PAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGL 94 (211)
T ss_pred HHHHHHHHcCCCeEEEecC-------C------CCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCC
Confidence 46888999999987 3332 0 111578888888775 33333221 2357889999999999975542
Q ss_pred CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhh
Q 021609 124 LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 124 ~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~ 203 (310)
..++.+... ..+++++.++.|.-|+..+.++|++.+++++....|.
T Consensus 95 --~~ev~~~a~--~~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg------------------------------ 140 (211)
T COG0800 95 --NPEVAKAAN--RYGIPYIPGVATPTEIMAALELGASALKFFPAEVVGG------------------------------ 140 (211)
T ss_pred --CHHHHHHHH--hCCCcccCCCCCHHHHHHHHHcChhheeecCccccCc------------------------------
Confidence 345555554 4689999999999999999999999999886532221
Q ss_pred hccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 204 KKIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 204 ~~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
...++.+.. ...+++. ..||| +++++.+++.+|+.+|.+||.++.
T Consensus 141 ------~~~~ka~~gP~~~v~~~--pTGGV-s~~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 141 ------PAMLKALAGPFPQVRFC--PTGGV-SLDNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred ------HHHHHHHcCCCCCCeEe--ecCCC-CHHHHHHHHhCCceEEecCccccC
Confidence 112222221 1346676 78999 699999999999999999999996
No 161
>PLN02979 glycolate oxidase
Probab=98.81 E-value=3.5e-07 Score=86.48 Aligned_cols=121 Identities=24% Similarity=0.284 Sum_probs=83.3
Q ss_pred CCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHH
Q 021609 138 FRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216 (310)
Q Consensus 138 ~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i 216 (310)
.++++++ ++.+.+++.++.+.|+|.|.+.|+++... . ...++.+.+.++
T Consensus 222 ~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql------------------d------------~~p~t~~~L~ei 271 (366)
T PLN02979 222 TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL------------------D------------YVPATISALEEV 271 (366)
T ss_pred cCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCC------------------C------------CchhHHHHHHHH
Confidence 3566665 48899999999999999999988765220 0 112345566666
Q ss_pred hhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhc
Q 021609 217 KQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVG 294 (310)
Q Consensus 217 ~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 294 (310)
.+. .++||+ ++|||++..|+.+++.+|||+|.+|+.++.+ .+..=.+.+ .+.+..+.+++-..|..
T Consensus 272 ~~~~~~~~~Vi--~dGGIr~G~Di~KALALGAdaV~iGrp~L~~-----la~~G~~Gv-----~~~l~~l~~El~~~m~l 339 (366)
T PLN02979 272 VKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVFS-----LAAEGEAGV-----RKVLQMLRDEFELTMAL 339 (366)
T ss_pred HHHhCCCCeEE--EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHH-----HHhcCHHHH-----HHHHHHHHHHHHHHHHH
Confidence 553 358998 7999999999999999999999999988841 111001111 23345666777777777
Q ss_pred ccCccc
Q 021609 295 LNLSDH 300 (310)
Q Consensus 295 ~~~~~~ 300 (310)
+|.+++
T Consensus 340 ~G~~~i 345 (366)
T PLN02979 340 SGCRSL 345 (366)
T ss_pred hCCCCH
Confidence 775554
No 162
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=98.79 E-value=4.5e-08 Score=93.18 Aligned_cols=122 Identities=23% Similarity=0.311 Sum_probs=82.9
Q ss_pred CCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHH
Q 021609 138 FRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216 (310)
Q Consensus 138 ~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i 216 (310)
.++++++ ++.+.+++.++.+.|++.|.+.|++++.. + ...++.+.+.++
T Consensus 224 ~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~---------------------d---------~~~~~~~~L~~i 273 (356)
T PF01070_consen 224 WKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQL---------------------D---------WGPPTIDALPEI 273 (356)
T ss_dssp CSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSS---------------------T---------TS-BHHHHHHHH
T ss_pred cCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccC---------------------c---------cccccccccHHH
Confidence 3455444 46788899999999999999988776431 0 123446666666
Q ss_pred hhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhc
Q 021609 217 KQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVG 294 (310)
Q Consensus 217 ~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 294 (310)
++. .++||+ ++|||++..|+.+++.+||++|.+|+.++. ..+..=.+.+. +.+..+.+++-..|..
T Consensus 274 ~~~~~~~~~i~--~dgGir~g~Dv~kalaLGA~~v~igr~~l~-----~l~~~g~~gv~-----~~~~~l~~el~~~m~l 341 (356)
T PF01070_consen 274 RAAVGDDIPII--ADGGIRRGLDVAKALALGADAVGIGRPFLY-----ALAAGGEEGVE-----RVLEILKEELKRAMFL 341 (356)
T ss_dssp HHHHTTSSEEE--EESS--SHHHHHHHHHTT-SEEEESHHHHH-----HHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HhhhcCCeeEE--EeCCCCCHHHHHHHHHcCCCeEEEccHHHH-----HHHHhhHHHHH-----HHHHHHHHHHHHHHHH
Confidence 653 369998 799999999999999999999999999885 22222223332 3356788888899999
Q ss_pred ccCccch
Q 021609 295 LNLSDHK 301 (310)
Q Consensus 295 ~~~~~~~ 301 (310)
+|.++++
T Consensus 342 ~G~~~~~ 348 (356)
T PF01070_consen 342 LGARSIA 348 (356)
T ss_dssp HT-SBGG
T ss_pred HCCCCHH
Confidence 9988875
No 163
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=98.78 E-value=6.2e-08 Score=92.72 Aligned_cols=121 Identities=22% Similarity=0.225 Sum_probs=86.0
Q ss_pred CCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh
Q 021609 139 RIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK 217 (310)
Q Consensus 139 ~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~ 217 (310)
++++++ ++.+.++++++.+.|+|.|.+.++++... . ...++.+.+.+++
T Consensus 253 ~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~------------------d------------~~~~t~~~L~ei~ 302 (383)
T cd03332 253 DLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQV------------------D------------GSIAALDALPEIV 302 (383)
T ss_pred CCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCC------------------C------------CCcCHHHHHHHHH
Confidence 455554 47889999999999999999887654210 0 1234466777776
Q ss_pred hcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcc
Q 021609 218 QLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGL 295 (310)
Q Consensus 218 ~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 295 (310)
+.. ++||+ ++|||++..|+.+++.+|||+|.+|+.++. ..+..=.+.+ .+-+..+..++...|-.+
T Consensus 303 ~~~~~~~~vi--~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~-----~l~~~G~~gv-----~~~l~~l~~El~~~m~l~ 370 (383)
T cd03332 303 EAVGDRLTVL--FDSGVRTGADIMKALALGAKAVLIGRPYAY-----GLALGGEDGV-----EHVLRNLLAELDLTMGLA 370 (383)
T ss_pred HHhcCCCeEE--EeCCcCcHHHHHHHHHcCCCEEEEcHHHHH-----HHHhccHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 543 59998 789999999999999999999999999884 1111001111 233456778888888888
Q ss_pred cCccch
Q 021609 296 NLSDHK 301 (310)
Q Consensus 296 ~~~~~~ 301 (310)
|.++++
T Consensus 371 G~~~i~ 376 (383)
T cd03332 371 GIRSIA 376 (383)
T ss_pred CCCCHH
Confidence 888764
No 164
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.78 E-value=9.7e-07 Score=81.43 Aligned_cols=193 Identities=17% Similarity=0.212 Sum_probs=122.7
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.+..-|+++.+. ..+..+ . ......+....+...+||.+.+--+ ..+.++.+.+.|+
T Consensus 24 n~~n~e~~~avi~aAe~~~~Pvii~~~~~--~~~~~~-~--~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~ 98 (281)
T PRK06806 24 SVANMEMVMGAIKAAEELNSPIILQIAEV--RLNHSP-L--HLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGF 98 (281)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcCcc--hhccCC-h--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 4455554 445577777766666321 111111 1 0012345555667799999875333 5678899999999
Q ss_pred CEE-EeCCCCCch-------hHHHHHHhcCC------C-C--------cEEEecCCHHHHHHHHH-hCCCEEEEc-CCC-
Q 021609 116 DYV-DESEVLTPA-------DEENHINKHNF------R-I--------PFVCGCRNLGEALRRIR-EGAAMIRTK-GEA- 169 (310)
Q Consensus 116 d~V-i~~~~~~~~-------~~~~~i~~~~~------~-i--------~~~v~~~t~~ea~~~~~-~Gad~V~v~-g~~- 169 (310)
+.| +-...++.. ++.++.++++. + + .+..++++++++.+..+ .|+|++.+. |..
T Consensus 99 tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~h 178 (281)
T PRK06806 99 TSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAH 178 (281)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCC
Confidence 999 422223322 33344443321 0 1 12345789999999874 599999873 221
Q ss_pred CCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 170 GTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
++. + ....-.++.++++++..++|++++.+.|| +.+++.++++.|+++|
T Consensus 179 g~~-------------------~-----------~~~~l~~~~L~~i~~~~~iPlV~hG~SGI-~~e~~~~~i~~G~~ki 227 (281)
T PRK06806 179 GMY-------------------N-----------GDPNLRFDRLQEINDVVHIPLVLHGGSGI-SPEDFKKCIQHGIRKI 227 (281)
T ss_pred CCC-------------------C-----------CCCccCHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHHcCCcEE
Confidence 111 0 01233578899999888999997733399 6999999999999999
Q ss_pred EEccccccCCCHHHHHHHHHHH
Q 021609 250 FVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 250 ~VGsai~~a~dp~~~a~~l~~~ 271 (310)
.|.|.|.. +|...++++++.
T Consensus 228 nv~T~i~~--a~~~a~~~~~~~ 247 (281)
T PRK06806 228 NVATATFN--SVITAVNNLVLN 247 (281)
T ss_pred EEhHHHHH--HHHHHHHHHHHh
Confidence 99999997 677777766543
No 165
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.78 E-value=1.1e-07 Score=90.34 Aligned_cols=170 Identities=21% Similarity=0.228 Sum_probs=100.8
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCCC--CC-CHHHHHHHHhhcCcceeeccccCcHHHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVAR--MS-DPQLIKEIKQSVTIPVMAKARIGHFVEAQI 109 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~~--~~-~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~ 109 (310)
..|+.+.++|+|+| +|+ | .++..+.+||+-. .+ ..+.++.++++++.++.++.+++..+..
T Consensus 145 ~AA~ra~~aGfDgV-eih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~-- 221 (343)
T cd04734 145 DAARRCQAGGLDGV-ELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDT-- 221 (343)
T ss_pred HHHHHHHHcCCCEE-EEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhcc--
Confidence 35778889999997 665 1 2333344566521 11 2256777788888777777776632210
Q ss_pred HHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhC-CCEEEEcCCCCCcchHHHHHHHHhhccce
Q 021609 110 LEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREG-AAMIRTKGEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 110 ~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~G-ad~V~v~g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
....+..+..+ -+..+.+.| +|++.++++....... ..
T Consensus 222 -----------~~G~~~~e~~~-------------------~~~~l~~~G~vd~i~vs~g~~~~~~~---~~-------- 260 (343)
T cd04734 222 -----------EGGLSPDEALE-------------------IAARLAAEGLIDYVNVSAGSYYTLLG---LA-------- 260 (343)
T ss_pred -----------CCCCCHHHHHH-------------------HHHHHHhcCCCCEEEeCCCCCCcccc---cc--------
Confidence 01112222221 234455677 8999886543211000 00
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHH
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRAQA 267 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a~~ 267 (310)
...+... ......++..+.+++.+++||+ +.|||.+++++.++++.| +|.|++|++++. ||.
T Consensus 261 ~~~~~~~--------~~~~~~~~~~~~ik~~~~ipvi--~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la--dP~----- 323 (343)
T cd04734 261 HVVPSMG--------MPPGPFLPLAARIKQAVDLPVF--HAGRIRDPAEAEQALAAGHADMVGMTRAHIA--DPH----- 323 (343)
T ss_pred cccCCCC--------CCcchhHHHHHHHHHHcCCCEE--eeCCCCCHHHHHHHHHcCCCCeeeecHHhHh--Ccc-----
Confidence 0000000 0112236777888888899998 789999999999999764 999999999997 776
Q ss_pred HHHHHhccC
Q 021609 268 IVRAVTHYS 276 (310)
Q Consensus 268 l~~~i~~~~ 276 (310)
|.+.+.+..
T Consensus 324 l~~k~~~g~ 332 (343)
T cd04734 324 LVAKAREGR 332 (343)
T ss_pred HHHHHHcCC
Confidence 444444443
No 166
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.77 E-value=2.1e-07 Score=87.60 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCCC--CC-CHHHHHHHHhhc--CcceeeccccCcHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVAR--MS-DPQLIKEIKQSV--TIPVMAKARIGHFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~~--~~-~~~~i~~i~~~~--~iPv~vk~~~~~~~~a 107 (310)
+.|+.+.++|+|+| +|+ |. +...+.+||+.. .+ ..+.++++++.+ ++||.++.......
T Consensus 145 ~aA~~a~~aGfDgv-eih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~-- 221 (327)
T cd02803 145 AAARRAKEAGFDGV-EIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFV-- 221 (327)
T ss_pred HHHHHHHHcCCCEE-EEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccC--
Confidence 36888899999997 654 11 334444555521 11 135677778777 67888876543100
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
....+..+..+ -+.++.+.|+|+|.++++......
T Consensus 222 -------------~~g~~~~e~~~-------------------la~~l~~~G~d~i~vs~g~~~~~~------------- 256 (327)
T cd02803 222 -------------PGGLTLEEAIE-------------------IAKALEEAGVDALHVSGGSYESPP------------- 256 (327)
T ss_pred -------------CCCCCHHHHHH-------------------HHHHHHHcCCCEEEeCCCCCcccc-------------
Confidence 00011111111 244456779999988765432110
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~-GadgV~VGsai~~a~dp~ 262 (310)
...+... ......++.++.+++..++||+ +.|||.+++++.++++. |||.|++||+++. ||.
T Consensus 257 -~~~~~~~--------~~~~~~~~~~~~ir~~~~iPVi--~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la--dP~ 319 (327)
T cd02803 257 -PIIPPPY--------VPEGYFLELAEKIKKAVKIPVI--AVGGIRDPEVAEEILAEGKADLVALGRALLA--DPD 319 (327)
T ss_pred -cccCCCC--------CCcchhHHHHHHHHHHCCCCEE--EeCCCCCHHHHHHHHHCCCCCeeeecHHHHh--Ccc
Confidence 0000000 0012235677888888899998 78999999999999987 7999999999997 664
No 167
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=98.76 E-value=1.3e-07 Score=89.47 Aligned_cols=163 Identities=17% Similarity=0.208 Sum_probs=104.0
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCCC--CC-CHHHHHHHHhhcCcceeeccccCcHHHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVAR--MS-DPQLIKEIKQSVTIPVMAKARIGHFVEAQI 109 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~~--~~-~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~ 109 (310)
..|+.+.++|+|+| +|+ | .++..+.+||+-. ++ ..+.++.||++++.||.++.......
T Consensus 146 ~aA~~a~~aGfDgV-eih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~---- 220 (337)
T PRK13523 146 QAAVRAKEAGFDVI-EIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYH---- 220 (337)
T ss_pred HHHHHHHHcCCCEE-EEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccC----
Confidence 35888899999997 664 2 2456666677631 22 23577778888888888877643100
Q ss_pred HHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceE
Q 021609 110 LEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIR 189 (310)
Q Consensus 110 ~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~ 189 (310)
....++.+..++ +..+.+.|+|+|.++++.....
T Consensus 221 -----------~~G~~~~e~~~i-------------------~~~l~~~gvD~i~vs~g~~~~~---------------- 254 (337)
T PRK13523 221 -----------PGGLTVQDYVQY-------------------AKWMKEQGVDLIDVSSGAVVPA---------------- 254 (337)
T ss_pred -----------CCCCCHHHHHHH-------------------HHHHHHcCCCEEEeCCCCCCCC----------------
Confidence 011122222222 3345567999999986532110
Q ss_pred eecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHHH
Q 021609 190 VLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a~~l 268 (310)
... ......+++.+++++..++||+ +.|+|.+++++.++++.| ||.|++|++++. ||.. .+.+
T Consensus 255 ---~~~--------~~~~~~~~~~~~ik~~~~ipVi--~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia--dP~~-~~k~ 318 (337)
T PRK13523 255 ---RID--------VYPGYQVPFAEHIREHANIATG--AVGLITSGAQAEEILQNNRADLIFIGRELLR--NPYF-PRIA 318 (337)
T ss_pred ---CCC--------CCccccHHHHHHHHhhcCCcEE--EeCCCCCHHHHHHHHHcCCCChHHhhHHHHh--CccH-HHHH
Confidence 000 0012246677888888899998 679999999999999876 999999999997 7752 3334
Q ss_pred HHHHhcc
Q 021609 269 VRAVTHY 275 (310)
Q Consensus 269 ~~~i~~~ 275 (310)
.+.+...
T Consensus 319 ~~~~~~~ 325 (337)
T PRK13523 319 AKELGFE 325 (337)
T ss_pred HHHcCCC
Confidence 4444433
No 168
>PRK14057 epimerase; Provisional
Probab=98.74 E-value=2.9e-06 Score=76.69 Aligned_cols=187 Identities=13% Similarity=0.094 Sum_probs=109.8
Q ss_pred HHHHHHHHcCCcEE-Eec-cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-eC
Q 021609 46 EQARVAEEAGACAV-MAL-ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi-~~ 121 (310)
+..+.++++|++++ +|+ +......-.++ ++.++.+++ ++|+-+.+-+. ....++.+.++|+|.|. ..
T Consensus 36 ~el~~l~~~g~d~lHiDVMDG~FVPNitfG-------p~~i~~i~~--~~p~DvHLMV~~P~~~i~~~~~aGad~It~H~ 106 (254)
T PRK14057 36 RYLQQLEALNQPLLHLDLMDGQFCPQFTVG-------PWAVGQLPQ--TFIKDVHLMVADQWTAAQACVKAGAHCITLQA 106 (254)
T ss_pred HHHHHHHHCCCCEEEEeccCCccCCccccC-------HHHHHHhcc--CCCeeEEeeeCCHHHHHHHHHHhCCCEEEEee
Confidence 67888999999998 443 11111001223 788888875 57766654433 45667889999999995 22
Q ss_pred CC-CCchhHHHHHHhcCCC---------CcEEEecCCHHHHHHHHHhCCCEEEEc--CCCCCcchHHHHHHHHhhccceE
Q 021609 122 EV-LTPADEENHINKHNFR---------IPFVCGCRNLGEALRRIREGAAMIRTK--GEAGTGNIIEAVRHVRSVMGDIR 189 (310)
Q Consensus 122 ~~-~~~~~~~~~i~~~~~~---------i~~~v~~~t~~ea~~~~~~Gad~V~v~--g~~~~~~~~~~~~~~r~~~~~~~ 189 (310)
.. ..+....+.+++.+.. .-+...+.|.-+...-.-.-+|+|.+. .+++.|--
T Consensus 107 Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~--------------- 171 (254)
T PRK14057 107 EGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKM--------------- 171 (254)
T ss_pred ccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchh---------------
Confidence 32 2345566667665431 223333445444333222236765433 12322210
Q ss_pred eecccChhHHHHhhhccCCcHHHHHHHhh---c--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 021609 190 VLRNMDDDEVFTFAKKIAAPYDLVMQTKQ---L--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~~i~~i~~---~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~ 264 (310)
. ....++-++++++ . .++.+- ..||| +.+++.++.++|||.+++||++++++|+.+.
T Consensus 172 F---------------i~~~l~KI~~lr~~~~~~~~~~~Ie--VDGGI-~~~ti~~l~~aGad~~V~GSalF~~~d~~~~ 233 (254)
T PRK14057 172 R---------------SSDLHERVAQLLCLLGDKREGKIIV--IDGSL-TQDQLPSLIAQGIDRVVSGSALFRDDRLVEN 233 (254)
T ss_pred c---------------cHHHHHHHHHHHHHHHhcCCCceEE--EECCC-CHHHHHHHHHCCCCEEEEChHhhCCCCHHHH
Confidence 0 0111222222222 1 133444 57999 6999999999999999999999998888888
Q ss_pred HHHHHHHHhc
Q 021609 265 AQAIVRAVTH 274 (310)
Q Consensus 265 a~~l~~~i~~ 274 (310)
.+.+++.+..
T Consensus 234 i~~l~~~~~~ 243 (254)
T PRK14057 234 TRSWRAMFKV 243 (254)
T ss_pred HHHHHHHHhh
Confidence 7777655443
No 169
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=1.4e-06 Score=74.57 Aligned_cols=186 Identities=16% Similarity=0.216 Sum_probs=113.1
Q ss_pred HHHHHHHHcCCcEEEecc---C--CcccccccCCCCCCCCHHHHHHHHhhcCcce--eecccc-CcHHHHHHHHHcCCCE
Q 021609 46 EQARVAEEAGACAVMALE---R--VPADIRSQGGVARMSDPQLIKEIKQSVTIPV--MAKARI-GHFVEAQILEAIGIDY 117 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~--~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv--~vk~~~-~~~~~a~~~~~aGad~ 117 (310)
+.++++.++|+||+ .|+ . .|+. .+| +-.++.+|+.++.|- -+..-. ...+-+.....+||+.
T Consensus 21 ~e~~~~l~~Gadwl-HlDVMDg~FVpNi--T~G-------~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~ 90 (224)
T KOG3111|consen 21 AECKKMLDAGADWL-HLDVMDGHFVPNI--TFG-------PPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASL 90 (224)
T ss_pred HHHHHHHHcCCCeE-EEeeecccccCCc--ccc-------hHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcce
Confidence 57889999999998 554 1 1221 123 568889998887763 222222 3345567888999999
Q ss_pred EE-eCCC-CCchhHHHHHHhcCCCCcEEEecCCH-HHHHHHHHhCCCEEEEc--CCCCCcchHHHHHHHHhhccceEeec
Q 021609 118 VD-ESEV-LTPADEENHINKHNFRIPFVCGCRNL-GEALRRIREGAAMIRTK--GEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 118 Vi-~~~~-~~~~~~~~~i~~~~~~i~~~v~~~t~-~ea~~~~~~Gad~V~v~--g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
+. .... -++.++.+.+++.+...-+.+-..|. +++.... .-.|++-+. -++++|- .++.+
T Consensus 91 ~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~-~~~D~vLvMtVePGFGGQ-----kFme~--------- 155 (224)
T KOG3111|consen 91 FTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLA-EHVDMVLVMTVEPGFGGQ-----KFMED--------- 155 (224)
T ss_pred EEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhh-ccccEEEEEEecCCCchh-----hhHHH---------
Confidence 95 2222 23678888887654332222223333 3333322 234554322 1232221 00000
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHh-hcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTK-QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~-~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
-..-++.++ +..++-+- ..||+ +++++.++.++||+.++.||+++++.||....+.+++.
T Consensus 156 ----------------mm~KV~~lR~kyp~l~ie--vDGGv-~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~ 216 (224)
T KOG3111|consen 156 ----------------MMPKVEWLREKYPNLDIE--VDGGV-GPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNS 216 (224)
T ss_pred ----------------HHHHHHHHHHhCCCceEE--ecCCc-CcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHH
Confidence 012244454 33444443 37999 69999999999999999999999999999998888777
Q ss_pred Hhcc
Q 021609 272 VTHY 275 (310)
Q Consensus 272 i~~~ 275 (310)
+..+
T Consensus 217 v~~a 220 (224)
T KOG3111|consen 217 VEKA 220 (224)
T ss_pred Hhhh
Confidence 7644
No 170
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.73 E-value=1.9e-06 Score=75.10 Aligned_cols=178 Identities=22% Similarity=0.241 Sum_probs=118.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC--
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE-- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~-- 122 (310)
..+++.+.+||+.+ |+ - .++++++.+++..++|+.+--. ..+..-.+.++|||.|- +.-
T Consensus 31 ~i~~AA~~ggAt~v-DI-------A--------adp~LV~~~~~~s~lPICVSaV--ep~~f~~aV~AGAdliEIGNfDs 92 (242)
T PF04481_consen 31 AIVKAAEIGGATFV-DI-------A--------ADPELVKLAKSLSNLPICVSAV--EPELFVAAVKAGADLIEIGNFDS 92 (242)
T ss_pred HHHHHHHccCCceE-Ee-------c--------CCHHHHHHHHHhCCCCeEeecC--CHHHHHHHHHhCCCEEEecchHH
Confidence 46788888999975 54 1 2389999999999999987643 22455678899999994 331
Q ss_pred ------CCCchhHHHHHHh---cCCCCcEEEecC-CH------HHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhcc
Q 021609 123 ------VLTPADEENHINK---HNFRIPFVCGCR-NL------GEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 123 ------~~~~~~~~~~i~~---~~~~i~~~v~~~-t~------~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~ 186 (310)
.++.+++.++.++ .-++++..+.+. +. +-|..+.++|+|++-+.|.+.... .
T Consensus 93 FY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p-~----------- 160 (242)
T PF04481_consen 93 FYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKP-T----------- 160 (242)
T ss_pred HHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCC-C-----------
Confidence 2455555555544 336666666643 22 346667788999998776432110 0
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHH
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a 265 (310)
.-..-++++ ...+.+.....+.+.+++||+ ++.|+ +.-.+..++.+||.||.|||++-+-.|...+.
T Consensus 161 ------~~g~lglIe---kaapTLAaay~ISr~v~iPVl--cASGl-S~vT~PmAiaaGAsGVGVGSavn~Ln~~~aMv 227 (242)
T PF04481_consen 161 ------SPGILGLIE---KAAPTLAAAYAISRAVSIPVL--CASGL-SAVTAPMAIAAGASGVGVGSAVNRLNDEVAMV 227 (242)
T ss_pred ------CcchHHHHH---HHhHHHHHHHHHHhccCCceE--eccCc-chhhHHHHHHcCCcccchhHHhhhcccHHHHH
Confidence 000001110 113345566677777899999 68999 57889999999999999999999866655443
No 171
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=98.71 E-value=1.2e-07 Score=90.22 Aligned_cols=128 Identities=23% Similarity=0.267 Sum_probs=85.0
Q ss_pred HHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCC
Q 021609 130 ENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAA 208 (310)
Q Consensus 130 ~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
.+.+++. .++++++ ++.+.++++++.+.|+|.|.+.|+++... . ...+
T Consensus 216 i~wlr~~-~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql------------------d------------~~~~ 264 (367)
T PLN02493 216 VQWLQTI-TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL------------------D------------YVPA 264 (367)
T ss_pred HHHHHhc-cCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCC------------------C------------Cchh
Confidence 3444432 3456555 47889999999999999999988765210 0 1123
Q ss_pred cHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhh
Q 021609 209 PYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSC 286 (310)
Q Consensus 209 ~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~ 286 (310)
+.+.+.++.+. .++||+ ++|||++..|+.+++.+||++|.+|+.++.. .+..=.+.+ .+.+..+.+
T Consensus 265 t~~~L~ei~~av~~~~~vi--~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~-----l~~~G~~gv-----~~~l~~l~~ 332 (367)
T PLN02493 265 TISALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVFS-----LAAEGEAGV-----RKVLQMLRD 332 (367)
T ss_pred HHHHHHHHHHHhCCCCeEE--EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHH-----HHhcCHHHH-----HHHHHHHHH
Confidence 46666666553 358998 7899999999999999999999999988841 110000111 233445666
Q ss_pred hcccchhcccCccc
Q 021609 287 GLGEAMVGLNLSDH 300 (310)
Q Consensus 287 ~~~~~~~~~~~~~~ 300 (310)
.+-..|..+|.+++
T Consensus 333 el~~~m~l~G~~~i 346 (367)
T PLN02493 333 EFELTMALSGCRSL 346 (367)
T ss_pred HHHHHHHHhCCCCH
Confidence 66677777665544
No 172
>PLN02535 glycolate oxidase
Probab=98.71 E-value=1.3e-07 Score=89.96 Aligned_cols=88 Identities=25% Similarity=0.372 Sum_probs=67.6
Q ss_pred CCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHH
Q 021609 138 FRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216 (310)
Q Consensus 138 ~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i 216 (310)
.++++++ ++.+.++++++.+.|+|.|.+.|.++.. +. ...++.+.+.++
T Consensus 222 ~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~------------------~d------------~~~~t~~~L~ev 271 (364)
T PLN02535 222 TNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQ------------------LD------------YSPATISVLEEV 271 (364)
T ss_pred cCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCC------------------CC------------CChHHHHHHHHH
Confidence 4566666 4889999999999999999988765311 00 012235566666
Q ss_pred hhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 217 KQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 217 ~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.+.. ++||+ ++|||++..|+.+++.+||++|++|++++.
T Consensus 272 ~~av~~~ipVi--~dGGIr~g~Dv~KALalGA~aV~vGr~~l~ 312 (364)
T PLN02535 272 VQAVGGRVPVL--LDGGVRRGTDVFKALALGAQAVLVGRPVIY 312 (364)
T ss_pred HHHHhcCCCEE--eeCCCCCHHHHHHHHHcCCCEEEECHHHHh
Confidence 5533 69998 799999999999999999999999999986
No 173
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=98.71 E-value=3.2e-08 Score=93.54 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=41.0
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
..++.++.+.. ++|++ +.|||.|++|+.+++.+||+.|++||+++. .+|.
T Consensus 275 l~~v~~~~~~~~~~ipii--g~GGI~~~~da~e~l~aGA~~Vqv~ta~~~-~Gp~ 326 (335)
T TIGR01036 275 TEIIRRLYAELQGRLPII--GVGGISSAQDALEKIRAGASLLQIYSGFIY-WGPP 326 (335)
T ss_pred HHHHHHHHHHhCCCCCEE--EECCCCCHHHHHHHHHcCCcHHHhhHHHHH-hCch
Confidence 44566665544 68998 789999999999999999999999999986 2454
No 174
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.70 E-value=8.2e-08 Score=91.50 Aligned_cols=152 Identities=21% Similarity=0.228 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCCC--CC-CHHHHHHHHhhcC----cceeeccccCcHH
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVAR--MS-DPQLIKEIKQSVT----IPVMAKARIGHFV 105 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~~--~~-~~~~i~~i~~~~~----iPv~vk~~~~~~~ 105 (310)
+.|+.+.++|+|+| +|+ | .+...+.+||+-. .+ ..+.++.++++++ .++.++.+++..+
T Consensus 148 ~aA~~a~~aGfDgV-eih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~ 226 (353)
T cd04735 148 EATRRAIEAGFDGV-EIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEE 226 (353)
T ss_pred HHHHHHHHcCCCEE-EEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccc
Confidence 46888899999997 554 3 2344556677731 11 2356677788775 4555555554321
Q ss_pred HHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhc
Q 021609 106 EAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVM 185 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~ 185 (310)
.. ....+..+..+ -+..+.+.|+|+|.++++.++...
T Consensus 227 ~~-------------~~g~~~ee~~~-------------------i~~~L~~~GvD~I~Vs~g~~~~~~----------- 263 (353)
T cd04735 227 PE-------------EPGIRMEDTLA-------------------LVDKLADKGLDYLHISLWDFDRKS----------- 263 (353)
T ss_pred cc-------------CCCCCHHHHHH-------------------HHHHHHHcCCCEEEeccCcccccc-----------
Confidence 10 01122222222 234456779999999865432210
Q ss_pred cceEeecccChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 186 GDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 186 ~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
.. .........+.+++.. ++||+ +.|||.|++++.++++.|||.|++|++++. ||.
T Consensus 264 ------~~-----------~~~~~~~~~~~ik~~~~~~iPVi--~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia--dPd 321 (353)
T cd04735 264 ------RR-----------GRDDNQTIMELVKERIAGRLPLI--AVGSINTPDDALEALETGADLVAIGRGLLV--DPD 321 (353)
T ss_pred ------cc-----------CCcchHHHHHHHHHHhCCCCCEE--EECCCCCHHHHHHHHHcCCChHHHhHHHHh--Ccc
Confidence 00 0011233444455443 78998 679999999999999889999999999998 564
No 175
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.70 E-value=2.1e-07 Score=92.29 Aligned_cols=128 Identities=15% Similarity=0.174 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCCCEEEe--CCCCC--chhHHHHHHhcCCC-CcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHH
Q 021609 104 FVEAQILEAIGIDYVDE--SEVLT--PADEENHINKHNFR-IPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~--~~~~~--~~~~~~~i~~~~~~-i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
.+.++.+.++|+|.+.. ++.-+ ..+.++.+++..++ +.++++ +-|.+.++.+.++|+|+|.+....+ .+|++
T Consensus 244 ~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~G--s~c~t 321 (502)
T PRK07107 244 AERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGG--SICIT 321 (502)
T ss_pred HHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCC--cCccc
Confidence 47788999999999953 22222 24556666654333 666665 7899999999999999998853332 33321
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhc---------CCCCEEEeCCCCCCCHHHHHHHHHcCCC
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQL---------GRLPVVHFAAGGVATPADAAMMMQLGCD 247 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~---------~~iPVi~iA~GGI~t~~d~~~~l~~Gad 247 (310)
|... +. .+.+..+.++.+. .++||| +.|||++..|+.+++.+|||
T Consensus 322 -----------r~~~------------~~g~~~~~ai~~~~~a~~~~~~~~g~~~~vi--adgGir~~gdi~KAla~GA~ 376 (502)
T PRK07107 322 -----------REQK------------GIGRGQATALIEVAKARDEYFEETGVYIPIC--SDGGIVYDYHMTLALAMGAD 376 (502)
T ss_pred -----------cccc------------CCCccHHHHHHHHHHHHHHHHhhcCCcceEE--EcCCCCchhHHHHHHHcCCC
Confidence 1111 12 2224444444332 138998 88999999999999999999
Q ss_pred EEEEccccccC
Q 021609 248 GVFVGSGVFKS 258 (310)
Q Consensus 248 gV~VGsai~~a 258 (310)
+||+|+.|..+
T Consensus 377 ~vm~G~~~ag~ 387 (502)
T PRK07107 377 FIMLGRYFARF 387 (502)
T ss_pred eeeeChhhhcc
Confidence 99999999874
No 176
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=98.67 E-value=1.9e-07 Score=89.32 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=85.6
Q ss_pred CCc-EEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh
Q 021609 139 RIP-FVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK 217 (310)
Q Consensus 139 ~i~-~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~ 217 (310)
+.+ ++-++.+.++++++.+.|+|.|.+.+.+++.. . ...++.+.+.++.
T Consensus 245 ~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~------------------d------------~~~~t~~~L~~i~ 294 (381)
T PRK11197 245 DGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQL------------------D------------GVLSSARALPAIA 294 (381)
T ss_pred CCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCC------------------C------------CcccHHHHHHHHH
Confidence 444 45568999999999999999999988755320 0 1123345555554
Q ss_pred hc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcc
Q 021609 218 QL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGL 295 (310)
Q Consensus 218 ~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 295 (310)
+. .++||+ ++|||++..|+.+++.+||++|++|+.++.. .+..=.+.+ .+.+..+.+++...|..+
T Consensus 295 ~a~~~~~~vi--~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~-----la~~G~~gv-----~~~l~~l~~El~~~m~l~ 362 (381)
T PRK11197 295 DAVKGDITIL--ADSGIRNGLDVVRMIALGADTVLLGRAFVYA-----LAAAGQAGV-----ANLLDLIEKEMRVAMTLT 362 (381)
T ss_pred HHhcCCCeEE--eeCCcCcHHHHHHHHHcCcCceeEhHHHHHH-----HHhccHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 43 368998 7999999999999999999999999998851 111111111 234567778888888888
Q ss_pred cCccch
Q 021609 296 NLSDHK 301 (310)
Q Consensus 296 ~~~~~~ 301 (310)
|.++++
T Consensus 363 G~~~i~ 368 (381)
T PRK11197 363 GAKSIS 368 (381)
T ss_pred CCCCHH
Confidence 877764
No 177
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=98.67 E-value=7.4e-09 Score=96.24 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=48.1
Q ss_pred HHHHHHHhhcCC--CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 210 YDLVMQTKQLGR--LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 210 ~~~i~~i~~~~~--iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
+.++.++++..+ +||+ +.|||.|++|+.+++.+||+.|+++|+++. .+| ...+++.+.+++|
T Consensus 231 L~~V~~~~~~~~~~i~Ii--g~GGI~s~~da~e~l~aGA~~Vqv~Sal~~-~Gp-~~~~~i~~~L~~~ 294 (295)
T PF01180_consen 231 LRWVRELRKALGQDIPII--GVGGIHSGEDAIEFLMAGASAVQVCSALIY-RGP-GVIRRINRELEEW 294 (295)
T ss_dssp HHHHHHHHHHTTTSSEEE--EESS--SHHHHHHHHHHTESEEEESHHHHH-HGT-THHHHHHHHHHHH
T ss_pred HHHHHHHHhccccceEEE--EeCCcCCHHHHHHHHHhCCCHheechhhhh-cCc-HHHHHHHHHHHhh
Confidence 456666766655 9998 789999999999999999999999999965 255 4566688877765
No 178
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.66 E-value=3.6e-07 Score=78.59 Aligned_cols=180 Identities=19% Similarity=0.242 Sum_probs=113.0
Q ss_pred HHHHHHHHcCCcEEEecc-----C---Cccccccc-----CCCCCCCCHHHHHHHHhh-cCcceeeccccC------cHH
Q 021609 46 EQARVAEEAGACAVMALE-----R---VPADIRSQ-----GGVARMSDPQLIKEIKQS-VTIPVMAKARIG------HFV 105 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-----~---~~~~~~~~-----~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~------~~~ 105 (310)
..-+-+.+.|++.| +|. | -|+....+ .|..+-...+.+++.+.. +.+|++....++ ...
T Consensus 36 kilkglq~gG~dII-ELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~ 114 (268)
T KOG4175|consen 36 KILKGLQSGGSDII-ELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVEN 114 (268)
T ss_pred HHHHHHhcCCcCeE-EecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHH
Confidence 44555677888854 764 1 23322221 233332333455555544 789999875543 345
Q ss_pred HHHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCCHHHHHHHH-HhCCCEEEEcCCCC-CcchHHHHHHH
Q 021609 106 EAQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRNLGEALRRI-REGAAMIRTKGEAG-TGNIIEAVRHV 181 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~-~~Gad~V~v~g~~~-~~~~~~~~~~~ 181 (310)
.++.+.++||+++++.+.. +...+++.+++++..+..++...|.++...+. +.--.+|.+-.+.+ +|. .+.+
T Consensus 115 ~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvVSrmG~TG~-~~sv--- 190 (268)
T KOG4175|consen 115 YIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVVSRMGVTGT-RESV--- 190 (268)
T ss_pred HHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEEEecccccc-HHHH---
Confidence 6789999999999877742 24456777877888877777777776666654 33223554443432 331 0000
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
. ..-..+++++++.. +.|+. ...||++++++.+.-.. +|||+|||.+.+
T Consensus 191 -------------n-----------~~l~~L~qrvrk~t~dtPlA--VGFGvst~EHf~qVgsv-aDGVvvGSkiv~ 240 (268)
T KOG4175|consen 191 -------------N-----------EKLQSLLQRVRKATGDTPLA--VGFGVSTPEHFKQVGSV-ADGVVVGSKIVK 240 (268)
T ss_pred -------------H-----------HHHHHHHHHHHHhcCCCcee--EeeccCCHHHHHhhhhh-ccceEecHHHHH
Confidence 0 01145778888875 78998 57899999999988777 999999998874
No 179
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=98.64 E-value=4.5e-06 Score=77.10 Aligned_cols=183 Identities=14% Similarity=0.197 Sum_probs=114.1
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeecccc-CcHHHHHHHHHcC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARI-GHFVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~-~~~~~a~~~~~aG 114 (310)
++.+.+. .+++++.+..-|+++.+. ..+..+|. ......++.+++..+ +||.+..-- ...+.++.+.+.|
T Consensus 22 n~~n~e~~~avi~aAe~~~~PvIl~~~~~--~~~~~~~~--~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~G 97 (282)
T TIGR01859 22 NFNNLEWTQAILEAAEEENSPVIIQVSEG--AIKYMGGY--KMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAG 97 (282)
T ss_pred EECCHHHHHHHHHHHHHhCCCEEEEcCcc--hhhccCcH--HHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcC
Confidence 4455654 445566777766565311 11211111 112345666677777 999987432 3567888999999
Q ss_pred CCEEE-eCCCCCch-------hHHHHHHhcCCCCc-------------EE--EecCCHHHHHHHHH-hCCCEEEEc-CCC
Q 021609 115 IDYVD-ESEVLTPA-------DEENHINKHNFRIP-------------FV--CGCRNLGEALRRIR-EGAAMIRTK-GEA 169 (310)
Q Consensus 115 ad~Vi-~~~~~~~~-------~~~~~i~~~~~~i~-------------~~--v~~~t~~ea~~~~~-~Gad~V~v~-g~~ 169 (310)
++.|- -...++.. ++.++.+..+..+. +. .+.++++++....+ .|+|++.+. |..
T Consensus 98 f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~ 177 (282)
T TIGR01859 98 FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTS 177 (282)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCcc
Confidence 99994 22223333 22333333222111 01 34779999999886 899999864 331
Q ss_pred CCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 170 GTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
.. .++ +...-+++.++++++..++|++++.+.|| +.+++.+++++|+++|
T Consensus 178 hg------------------~~~-----------~~~~l~~e~L~~i~~~~~iPlv~hGgSGi-~~e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 178 HG------------------KYK-----------GEPGLDFERLKEIKELTNIPLVLHGASGI-PEEQIKKAIKLGIAKI 227 (282)
T ss_pred cc------------------ccC-----------CCCccCHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHHcCCCEE
Confidence 10 000 01223478899999888999997733399 6899999999999999
Q ss_pred EEcccccc
Q 021609 250 FVGSGVFK 257 (310)
Q Consensus 250 ~VGsai~~ 257 (310)
-++|.+..
T Consensus 228 Nv~T~l~~ 235 (282)
T TIGR01859 228 NIDTDCRI 235 (282)
T ss_pred EECcHHHH
Confidence 99999875
No 180
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=98.62 E-value=3.2e-06 Score=75.13 Aligned_cols=161 Identities=12% Similarity=0.153 Sum_probs=94.3
Q ss_pred HHHHHHHHhh-cCcceeeccccCc--HHHHHHHHHcCCCEEEeCCCCCchhHHHHHHh-cCCCCcEEEecC---CHHHHH
Q 021609 81 PQLIKEIKQS-VTIPVMAKARIGH--FVEAQILEAIGIDYVDESEVLTPADEENHINK-HNFRIPFVCGCR---NLGEAL 153 (310)
Q Consensus 81 ~~~i~~i~~~-~~iPv~vk~~~~~--~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~-~~~~i~~~v~~~---t~~ea~ 153 (310)
+..++++++. .+.|+.+...+.+ ...++.+.++|+|.+..+..-....+...++. ...+..++++.. +.+++.
T Consensus 44 ~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~ 123 (216)
T PRK13306 44 MKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQ 123 (216)
T ss_pred HHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHH
Confidence 6788899887 5888888765432 23334578999999964432233333333332 223444555533 334443
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc--HHHHHHHhhcCCCCEEEeCCCC
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP--YDLVMQTKQLGRLPVVHFAAGG 231 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~--~~~i~~i~~~~~iPVi~iA~GG 231 (310)
...+.+.+.+.+|-... +.+ + -....+ .+.++++++. +..+. ..||
T Consensus 124 ~~~~~~~~~~vl~~a~~---------------------~~~--~------G~v~s~~~~~~ir~~~~~-~~~i~--V~gG 171 (216)
T PRK13306 124 QWRDAGISQVIYHRSRD---------------------AQL--A------GVAWGEKDLNKVKKLSDM-GFKVS--VTGG 171 (216)
T ss_pred HHHcCChhhhhhhhhhh---------------------hhh--c------CCCCCHHHHHHHHHHhcC-CCeEE--EcCC
Confidence 33344443333321100 000 0 001222 2344444431 22244 4799
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 232 I~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
| +++.+....+.|+|.+++||+|++++||...++++.+.+++
T Consensus 172 I-~~~~~~~~~~~~ad~~VvGr~I~~a~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 172 L-VVEDLKLFKGIPVKTFIAGRAIRGAADPAAAARAFKDEIAK 213 (216)
T ss_pred C-CHhhHHHHhcCCCCEEEECCcccCCCCHHHHHHHHHHHHHh
Confidence 9 58888887888999999999999999999999999998864
No 181
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=98.60 E-value=6.1e-06 Score=76.62 Aligned_cols=197 Identities=16% Similarity=0.161 Sum_probs=123.1
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHHHcC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
++.+.+. .+++++.+..-|+++.+. ..+..+|. ......++.+.+.. ++||.+.+--+..+.++.+.+.|
T Consensus 24 N~~n~e~~~avi~aAe~~~sPvIlq~s~~--~~~~~~~~--~~~~~~~~~~a~~~~~~vPV~lHLDH~~~~~i~~ai~~G 99 (293)
T PRK07315 24 NTNNLEWTQAILRAAEAKKAPVLIQTSMG--AAKYMGGY--KVCKNLIENLVESMGITVPVAIHLDHGHYEDALECIEVG 99 (293)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCcc--HHhhcCcH--HHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcC
Confidence 4455654 445566777766666311 11111111 01134555566666 78999975444567889999999
Q ss_pred CCEE-EeCCCCCchh-------HHHHHHhcCC------C-------CcEEEec-CCHHHHHHHHHhCCCEEEEc-CCCCC
Q 021609 115 IDYV-DESEVLTPAD-------EENHINKHNF------R-------IPFVCGC-RNLGEALRRIREGAAMIRTK-GEAGT 171 (310)
Q Consensus 115 ad~V-i~~~~~~~~~-------~~~~i~~~~~------~-------i~~~v~~-~t~~ea~~~~~~Gad~V~v~-g~~~~ 171 (310)
++.| +-...++..+ +.++...++. + ..+..++ ++++++.+..+.|+|++.+. |...
T Consensus 100 ftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vH- 178 (293)
T PRK07315 100 YTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIH- 178 (293)
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeecccccc-
Confidence 9999 4222233332 2333332211 1 1123344 89999999889999999875 1210
Q ss_pred cchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 172 GNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 172 ~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
..+++.+ ..-.++.++++++.. ++|++++.+.|| +.+++.++++.|++.|-
T Consensus 179 -----------------G~y~t~~----------k~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiN 230 (293)
T PRK07315 179 -----------------GPYPENW----------EGLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQEAIKLGVAKVN 230 (293)
T ss_pred -----------------ccCCCCC----------CcCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHHHHHHcCCCEEE
Confidence 0111111 123478899998887 599997744449 69999999999999999
Q ss_pred EccccccCCCHHHHHHHHHHHH
Q 021609 251 VGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 251 VGsai~~a~dp~~~a~~l~~~i 272 (310)
++|.+.. ++...++++++..
T Consensus 231 v~T~i~~--~~~~~~~~~~~~~ 250 (293)
T PRK07315 231 VNTECQI--AFANATRKFARDY 250 (293)
T ss_pred EccHHHH--HHHHHHHHHHHhc
Confidence 9999997 7777777776654
No 182
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.59 E-value=1.1e-06 Score=83.07 Aligned_cols=131 Identities=20% Similarity=0.254 Sum_probs=90.6
Q ss_pred HHHHHHHHcCCCEEE--eCCC--CCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHH
Q 021609 105 VEAQILEAIGIDYVD--ESEV--LTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVR 179 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi--~~~~--~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~ 179 (310)
+....+.++|+|.|+ .+.. .-..+.++++++..+.+.++.+ +-|.+.+..++++|+|.+.+. .++|.+|.+-
T Consensus 254 ~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVG--MGsGSiCiTq- 330 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVG--MGSGSICITQ- 330 (503)
T ss_pred HHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEec--cccCceeeec-
Confidence 445677889999996 3333 2355778888888888887776 778899999999999999874 2344544210
Q ss_pred HHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 180 HVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 180 ~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
-+..+.+. ...+..+ ..+......+|+| |.|||+++.++.+++.+||+.||+|+-+...
T Consensus 331 ----------evma~Grp-------Q~TAVy~-va~~A~q~gvpvi--ADGGiq~~Ghi~KAl~lGAstVMmG~lLAgt 389 (503)
T KOG2550|consen 331 ----------KVMACGRP-------QGTAVYK-VAEFANQFGVPCI--ADGGIQNVGHVVKALGLGASTVMMGGLLAGT 389 (503)
T ss_pred ----------eeeeccCC-------cccchhh-HHHHHHhcCCcee--ecCCcCccchhHhhhhcCchhheecceeeee
Confidence 00011100 0111122 2233334679998 8999999999999999999999999988874
No 183
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=98.55 E-value=1.7e-06 Score=81.92 Aligned_cols=149 Identities=19% Similarity=0.160 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCCC--CC-CHHHHHHHHhhcCc-ceeeccccCcHHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVAR--MS-DPQLIKEIKQSVTI-PVMAKARIGHFVEAQ 108 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~~--~~-~~~~i~~i~~~~~i-Pv~vk~~~~~~~~a~ 108 (310)
+.|+.+.++|+|+| +|+ | .++..+++||+-. ++ ..+.++.||++++. ||.++.....+.
T Consensus 156 ~aA~~a~~aGfDgV-eih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~--- 231 (338)
T cd02933 156 QAARNAIEAGFDGV-EIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTF--- 231 (338)
T ss_pred HHHHHHHHcCCCEE-EEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccC---
Confidence 36888899999998 654 2 4566667777731 22 23567777877754 777665432100
Q ss_pred HHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccce
Q 021609 109 ILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
.| .....+..+..+ -++.+.+.|+|++.+..+.....
T Consensus 232 ----~~-----~~~~~~~ee~~~-------------------~~~~l~~~g~d~i~vs~g~~~~~--------------- 268 (338)
T cd02933 232 ----ND-----MGDSDPEATFSY-------------------LAKELNKRGLAYLHLVEPRVAGN--------------- 268 (338)
T ss_pred ----CC-----CCCCCCHHHHHH-------------------HHHHHHHcCCcEEEEecCCCCCc---------------
Confidence 00 000011122211 23445567999998843321110
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
.....+++.+.+++..++||+ +.|||. ++++.++++.| ||.|.+|++++. ||.
T Consensus 269 ----------------~~~~~~~~~~~ik~~~~ipvi--~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la--dP~ 322 (338)
T cd02933 269 ----------------PEDQPPDFLDFLRKAFKGPLI--AAGGYD-AESAEAALADGKADLVAFGRPFIA--NPD 322 (338)
T ss_pred ----------------ccccchHHHHHHHHHcCCCEE--EECCCC-HHHHHHHHHcCCCCEEEeCHhhhh--CcC
Confidence 012346677788888899998 679996 99999999875 999999999997 775
No 184
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.55 E-value=4.9e-06 Score=74.53 Aligned_cols=60 Identities=32% Similarity=0.563 Sum_probs=50.8
Q ss_pred CcHHHHHHHhhcCCC-CEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 208 APYDLVMQTKQLGRL-PVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 208 ~~~~~i~~i~~~~~i-PVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
.+.+.++.+++..+. |++ .+|||++++++.+++..|||+|+|||++.+ ||.++.+++++.
T Consensus 170 ~~~e~I~~v~~~~~~~pvi--vGGGIrs~e~a~~~l~~GAD~VVVGSai~~--d~~~~~~~~~~~ 230 (232)
T PRK04169 170 VPPEMVKAVKKALDITPLI--YGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKA 230 (232)
T ss_pred CCHHHHHHHHHhcCCCcEE--EECCCCCHHHHHHHHHhCCCEEEEChHHhh--CHHHHHHHHHhh
Confidence 447889999988887 998 689999999999999999999999999996 777555555544
No 185
>PRK08227 autoinducer 2 aldolase; Validated
Probab=98.55 E-value=2.2e-06 Score=78.10 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=52.3
Q ss_pred HHHhhcCCCCEEEeCCCCCCC-HH----HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhh
Q 021609 214 MQTKQLGRLPVVHFAAGGVAT-PA----DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEV 284 (310)
Q Consensus 214 ~~i~~~~~iPVi~iA~GGI~t-~~----d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~ 284 (310)
+++.+...+||++ +||=+. .+ .+..+++.||.|+.+||-+++++||..+++.+...+++....+...++
T Consensus 185 ~~vv~a~~vPVvi--aGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~~~s~~eA~~~ 258 (264)
T PRK08227 185 ERITAGCPVPIVI--AGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHENETAKEAYEL 258 (264)
T ss_pred HHHHHcCCCcEEE--eCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3344456789983 566553 33 355566789999999999999999999999999999988876654333
No 186
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=98.53 E-value=1.9e-06 Score=83.05 Aligned_cols=176 Identities=19% Similarity=0.223 Sum_probs=101.4
Q ss_pred HHHHHHHHcCCcEEEecc-------------C-CcccccccCCCCC--CC-CHHHHHHHHhhc--CcceeeccccCcHHH
Q 021609 46 EQARVAEEAGACAVMALE-------------R-VPADIRSQGGVAR--MS-DPQLIKEIKQSV--TIPVMAKARIGHFVE 106 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-------------~-~~~~~~~~~G~~~--~~-~~~~i~~i~~~~--~iPv~vk~~~~~~~~ 106 (310)
+.|+.+.++|+|+| +|+ | .+...+++||+-. ++ ..+.+++|++++ +.||.++..... .
T Consensus 154 ~AA~ra~~AGfDgV-Eih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~--~ 230 (382)
T cd02931 154 ESAVIAKEAGFDGV-EIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKS--Y 230 (382)
T ss_pred HHHHHHHHcCCCEE-EEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechh--h
Confidence 36888899999998 443 1 3455566666531 22 236777788877 578888765321 0
Q ss_pred HHHHHH---cCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHh
Q 021609 107 AQILEA---IGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRS 183 (310)
Q Consensus 107 a~~~~~---aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~ 183 (310)
...... .+.+.. ...+++.+.. +-++.+.+.|+|+|.+++..+.....
T Consensus 231 ~~~~~~~~~~~~~~~--~~g~~~e~~~-------------------~~~~~l~~~gvD~l~vs~g~~~~~~~-------- 281 (382)
T cd02931 231 IKDLRQGALPGEEFQ--EKGRDLEEGL-------------------KAAKILEEAGYDALDVDAGSYDAWYW-------- 281 (382)
T ss_pred ccccccccccccccc--cCCCCHHHHH-------------------HHHHHHHHhCCCEEEeCCCCCccccc--------
Confidence 000000 000000 0011112111 12334556799999998654211000
Q ss_pred hccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 184 VMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 184 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
..+.. + ......+++.+.+++.+++||+ +.|||.+++++.++++.| ||.|++|++++. ||.
T Consensus 282 ------~~~~~-------~-~~~~~~~~~~~~ik~~~~~pvi--~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la--dP~ 343 (382)
T cd02931 282 ------NHPPM-------Y-QKKGMYLPYCKALKEVVDVPVI--MAGRMEDPELASEAINEGIADMISLGRPLLA--DPD 343 (382)
T ss_pred ------ccCCc-------c-CCcchhHHHHHHHHHHCCCCEE--EeCCCCCHHHHHHHHHcCCCCeeeechHhHh--Ccc
Confidence 00000 0 0011124567778888899998 789999999999999865 999999999998 776
Q ss_pred HHHHHHHHHHhccC
Q 021609 263 KRAQAIVRAVTHYS 276 (310)
Q Consensus 263 ~~a~~l~~~i~~~~ 276 (310)
|.+.+.++.
T Consensus 344 -----l~~k~~~g~ 352 (382)
T cd02931 344 -----VVNKIRRGR 352 (382)
T ss_pred -----HHHHHHcCC
Confidence 455555554
No 187
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=98.52 E-value=1.1e-06 Score=77.10 Aligned_cols=171 Identities=20% Similarity=0.316 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCcEE-Eec-c--CCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc-CcHHHHHHHHHcCCCEEE-
Q 021609 46 EQARVAEEAGACAV-MAL-E--RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI-GHFVEAQILEAIGIDYVD- 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~--~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~-~~~~~a~~~~~aGad~Vi- 119 (310)
+.++.++++|++++ +|+ + -+|.. .++ ++.++.+++.+++|+-+.+-. +....++.+.++|+|.|.
T Consensus 16 ~~i~~l~~~g~d~lHiDiMDg~fvpn~--~~g-------~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~ 86 (201)
T PF00834_consen 16 EEIKRLEEAGADWLHIDIMDGHFVPNL--TFG-------PDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITF 86 (201)
T ss_dssp HHHHHHHHTT-SEEEEEEEBSSSSSSB---B--------HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHcCCCEEEEeecccccCCcc--cCC-------HHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEE
Confidence 67889999999998 443 1 12211 122 789999999999999887544 345677889999999995
Q ss_pred eCCC-CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcC--CCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 120 ESEV-LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 120 ~~~~-~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
.... ..+.+..+.+++.+...-+.+...|.-+...-.-.-+|+|.+.. ++++|-..
T Consensus 87 H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f--------------------- 145 (201)
T PF00834_consen 87 HAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKF--------------------- 145 (201)
T ss_dssp EGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB-----------------------
T ss_pred cccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccc---------------------
Confidence 2233 24556677776654433334444454332221112467665443 22222100
Q ss_pred hHHHHhhhccCCcHHHHHHHhhc-----CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~-----~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
....++-++++++. .++.+. ..||| +.+++.++.++|+|.+++||+++++
T Consensus 146 ---------~~~~~~KI~~l~~~~~~~~~~~~I~--vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 146 ---------IPEVLEKIRELRKLIPENGLDFEIE--VDGGI-NEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp ---------HGGHHHHHHHHHHHHHHHTCGSEEE--EESSE-STTTHHHHHHHT--EEEESHHHHTS
T ss_pred ---------cHHHHHHHHHHHHHHHhcCCceEEE--EECCC-CHHHHHHHHHcCCCEEEECHHHhCC
Confidence 01112222222221 346666 57999 6899999999999999999999974
No 188
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.51 E-value=3.1e-06 Score=80.27 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCCC--CC-CHHHHHHHHhhc--CcceeeccccCcHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVAR--MS-DPQLIKEIKQSV--TIPVMAKARIGHFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~~--~~-~~~~i~~i~~~~--~iPv~vk~~~~~~~~a 107 (310)
+.|+.+.++|+|+| +|+ |. +...+.+||+-. ++ ..+.+++||+++ ++||.++.... +.
T Consensus 153 ~aA~ra~~aGfDgV-eih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~--~~- 228 (338)
T cd04733 153 HAARLAQEAGFDGV-QIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSA--DF- 228 (338)
T ss_pred HHHHHHHHcCCCEE-EEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHH--Hc-
Confidence 46888899999997 664 22 344455666621 11 225677778877 47788775421 10
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
.. ...++.+.. +-+..+.+.|+|++.++++.+.....
T Consensus 229 ---~~---------~g~~~eea~-------------------~ia~~Le~~Gvd~iev~~g~~~~~~~------------ 265 (338)
T cd04733 229 ---QR---------GGFTEEDAL-------------------EVVEALEEAGVDLVELSGGTYESPAM------------ 265 (338)
T ss_pred ---CC---------CCCCHHHHH-------------------HHHHHHHHcCCCEEEecCCCCCCccc------------
Confidence 00 001111111 12334556789999888754321100
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
....... . .......++..+++++.+++||+ +.|+|.+++++.++++.| ||.|.+|++++. ||.
T Consensus 266 -~~~~~~~---~---~~~~~~~~~~~~~ik~~v~iPVi--~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia--dP~ 330 (338)
T cd04733 266 -AGAKKES---T---IAREAYFLEFAEKIRKVTKTPLM--VTGGFRTRAAMEQALASGAVDGIGLARPLAL--EPD 330 (338)
T ss_pred -cccccCC---c---cccchhhHHHHHHHHHHcCCCEE--EeCCCCCHHHHHHHHHcCCCCeeeeChHhhh--Ccc
Confidence 0000000 0 00011125677788888899998 689999999999999876 999999999997 776
No 189
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.48 E-value=7.2e-06 Score=72.79 Aligned_cols=51 Identities=29% Similarity=0.500 Sum_probs=45.6
Q ss_pred CcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 208 APYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 208 ~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
.+.+.++.+++.. ++|++ .+|||+|++++.+++++|||+|++||++++ ||.
T Consensus 161 ~~~e~I~~v~~~~~~~pl~--vGGGIrs~e~a~~l~~aGAD~VVVGsai~~--~p~ 212 (219)
T cd02812 161 GPPEVVRAVKKVLGDTPLI--VGGGIRSGEQAKEMAEAGADTIVVGNIVEE--DPN 212 (219)
T ss_pred CCHHHHHHHHHhcCCCCEE--EeCCCCCHHHHHHHHHcCCCEEEECchhhC--CHH
Confidence 4578899998877 89998 589999999999999999999999999997 564
No 190
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.47 E-value=3.7e-06 Score=79.59 Aligned_cols=151 Identities=17% Similarity=0.238 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCCCCCC----HHHHHHHHhhc--CcceeeccccCcHHH
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVARMSD----PQLIKEIKQSV--TIPVMAKARIGHFVE 106 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~~~~~----~~~i~~i~~~~--~iPv~vk~~~~~~~~ 106 (310)
+.|+.+.++|+|+| +|+ | .+...+.+||+ +... .+.++.+++.+ +.||.++.....+.
T Consensus 158 ~aA~~a~~aGfDgV-ei~~~~gyLl~qFlsp~~N~R~D~yGgs-l~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~- 234 (336)
T cd02932 158 AAARRAVEAGFDVI-EIHAAHGYLLHQFLSPLSNKRTDEYGGS-LENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV- 234 (336)
T ss_pred HHHHHHHHcCCCEE-EEccccccHHHHhcCCccCCCCcccCCC-HHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC-
Confidence 35888899999997 665 2 23333444554 2222 35667778887 78888876532100
Q ss_pred HHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhcc
Q 021609 107 AQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~ 186 (310)
....++.+..+ -+..+.+.|+|++.++.+..+..
T Consensus 235 --------------~~g~~~~e~~~-------------------ia~~Le~~gvd~iev~~g~~~~~------------- 268 (336)
T cd02932 235 --------------EGGWDLEDSVE-------------------LAKALKELGVDLIDVSSGGNSPA------------- 268 (336)
T ss_pred --------------CCCCCHHHHHH-------------------HHHHHHHcCCCEEEECCCCCCcc-------------
Confidence 00011111111 13344567899998875433211
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
..... ......+..+++++.+++||+ +.|||.+++++.++++.| +|.|++|++++. ||.
T Consensus 269 ---~~~~~----------~~~~~~~~~~~ir~~~~iPVi--~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~--dP~ 328 (336)
T cd02932 269 ---QKIPV----------GPGYQVPFAERIRQEAGIPVI--AVGLITDPEQAEAILESGRADLVALGRELLR--NPY 328 (336)
T ss_pred ---cccCC----------CccccHHHHHHHHhhCCCCEE--EeCCCCCHHHHHHHHHcCCCCeehhhHHHHh--Ccc
Confidence 00000 011124677788888899998 789999999999999887 999999999998 665
No 191
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=98.45 E-value=1e-05 Score=72.99 Aligned_cols=181 Identities=27% Similarity=0.352 Sum_probs=108.2
Q ss_pred ccccCCCHH-HHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccC--------c---
Q 021609 38 VIMDVVTPE-QARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIG--------H--- 103 (310)
Q Consensus 38 ~i~~~~~~~-~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~--------~--- 103 (310)
++...-|++ .++.+.++|++++ .. . +-.++.....+ ++|++++..-. +
T Consensus 38 p~~gl~d~e~~v~~v~~~g~dav-~~--------~---------~G~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~ 99 (265)
T COG1830 38 PIEGLEDPENIVAKVAEAGADAV-AM--------T---------PGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVL 99 (265)
T ss_pred CcccccCHHHHHHHHHhcCCCEE-Ee--------c---------HhHHhhcCccccCCcCEEEEeccccccCCCccccee
Confidence 555667775 5667788999987 22 0 22344443332 68888863211 1
Q ss_pred HHHHHHHHHcCCCEEE-----eCCC--CCchhHHHHHHh-cCCCCcEEEe-------c-----CCHH---H-HHHHHHhC
Q 021609 104 FVEAQILEAIGIDYVD-----ESEV--LTPADEENHINK-HNFRIPFVCG-------C-----RNLG---E-ALRRIREG 159 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi-----~~~~--~~~~~~~~~i~~-~~~~i~~~v~-------~-----~t~~---e-a~~~~~~G 159 (310)
.-.++.+...|+|+|- ++.. ....++.+.... +..+++.++- . .+.+ . ++.+.++|
T Consensus 100 ~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelG 179 (265)
T COG1830 100 VATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELG 179 (265)
T ss_pred eeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhc
Confidence 2346778899999993 2221 112233333333 4567766652 1 1111 1 22356789
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCC--HH-
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVAT--PA- 236 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t--~~- 236 (310)
+|+|++. + +++ .+..+++.+...+||+ .+||=++ .+
T Consensus 180 ADIiK~~-y--tg~------------------------------------~e~F~~vv~~~~vpVv--iaGG~k~~~~~~ 218 (265)
T COG1830 180 ADIIKTK-Y--TGD------------------------------------PESFRRVVAACGVPVV--IAGGPKTETERE 218 (265)
T ss_pred CCeEeec-C--CCC------------------------------------hHHHHHHHHhCCCCEE--EeCCCCCCChHH
Confidence 9999875 2 221 1122333333458998 4677666 22
Q ss_pred ---HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 237 ---DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 237 ---d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
-...+++.|+.|+.+||-|+++++|..+.+.+...+.+...
T Consensus 219 ~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Ivhe~~~ 262 (265)
T COG1830 219 FLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIVHENAS 262 (265)
T ss_pred HHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHhcCCCC
Confidence 24455678999999999999999999988877777766544
No 192
>PRK06852 aldolase; Validated
Probab=98.45 E-value=1.8e-05 Score=73.50 Aligned_cols=188 Identities=20% Similarity=0.194 Sum_probs=110.4
Q ss_pred cccCCCHH-HHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh-cCcceeeccccC--------------
Q 021609 39 IMDVVTPE-QARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKARIG-------------- 102 (310)
Q Consensus 39 i~~~~~~~-~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~-------------- 102 (310)
+....+++ ..+.+.++|++++ .+. .-.++..... .++|++++..-+
T Consensus 55 ~~gl~dp~~~i~~~~~~g~dav-~~~-----------------~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~ 116 (304)
T PRK06852 55 AKDDADPEHLFRIASKAKIGVF-ATQ-----------------LGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSR 116 (304)
T ss_pred CcccCCHHHHHHHHHhcCCCEE-EeC-----------------HHHHHhhccccCCCcEEEEECCCCCcCCcccCCcccc
Confidence 55667775 6777788999997 331 1233332211 367777763211
Q ss_pred cHHHHHHHHHcC------CCEEEeC----CCCC---chhHHHHHHh-cCCCCcEEEe--cC--------C---HHH-HHH
Q 021609 103 HFVEAQILEAIG------IDYVDES----EVLT---PADEENHINK-HNFRIPFVCG--CR--------N---LGE-ALR 154 (310)
Q Consensus 103 ~~~~a~~~~~aG------ad~Vi~~----~~~~---~~~~~~~i~~-~~~~i~~~v~--~~--------t---~~e-a~~ 154 (310)
.+-.++.+.+.| ||+|..+ +..+ ..++.+...+ +..++++++- .. + ... ++.
T Consensus 117 l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRi 196 (304)
T PRK06852 117 QLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGV 196 (304)
T ss_pred ceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHH
Confidence 122367788888 8888311 1112 2233333333 4567776641 11 1 122 333
Q ss_pred HHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCC
Q 021609 155 RIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVA 233 (310)
Q Consensus 155 ~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~ 233 (310)
+.++|||+|++.-.+. ....+.+..+++.+.. ++||++ +||=+
T Consensus 197 aaELGADIVKv~y~~~----------------------------------~~~g~~e~f~~vv~~~g~vpVvi--aGG~k 240 (304)
T PRK06852 197 AACLGADFVKVNYPKK----------------------------------EGANPAELFKEAVLAAGRTKVVC--AGGSS 240 (304)
T ss_pred HHHHcCCEEEecCCCc----------------------------------CCCCCHHHHHHHHHhCCCCcEEE--eCCCC
Confidence 5689999999863210 0011122333444444 789883 56655
Q ss_pred -CHHH----HHHHHH-cCCCEEEEccccccCCCH--HHHHHHHHHHHhccCChhh
Q 021609 234 -TPAD----AAMMMQ-LGCDGVFVGSGVFKSGDP--VKRAQAIVRAVTHYSDPEV 280 (310)
Q Consensus 234 -t~~d----~~~~l~-~GadgV~VGsai~~a~dp--~~~a~~l~~~i~~~~~~~~ 280 (310)
+.++ +..+++ .|+.|+++||-++++++| ..+++.+...+++....+.
T Consensus 241 ~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~~~s~~e 295 (304)
T PRK06852 241 TDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVRMCNAIYAITVEDKSVEE 295 (304)
T ss_pred CCHHHHHHHHHHHHHHcCCceeeechhhhcCCCchHHHHHHHHHHHHhCCCCHHH
Confidence 3333 455556 899999999999999999 8888989988887776554
No 193
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.43 E-value=2.5e-06 Score=81.39 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=47.8
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.+..+++++.+++||+ +.|++.+++++.++++.| +|.|++|++++. ||. |.+.+.++.
T Consensus 265 ~~~~~~ik~~v~iPVi--~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~--dP~-----~~~k~~~g~ 323 (353)
T cd02930 265 AWATAKLKRAVDIPVI--ASNRINTPEVAERLLADGDADMVSMARPFLA--DPD-----FVAKAAAGR 323 (353)
T ss_pred HHHHHHHHHhCCCCEE--EcCCCCCHHHHHHHHHCCCCChhHhhHHHHH--Ccc-----HHHHHHhCC
Confidence 4566788888899998 789999999999999865 999999999997 776 445555554
No 194
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.41 E-value=2.7e-06 Score=82.26 Aligned_cols=104 Identities=23% Similarity=0.325 Sum_probs=64.3
Q ss_pred HHHHHHhcCCCCcEEEec---CCHHHHHHHHHhC-CCEEEEcCCCC-CcchHHHHHHHHhhccceEeecccChhHHHHhh
Q 021609 129 EENHINKHNFRIPFVCGC---RNLGEALRRIREG-AAMIRTKGEAG-TGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 129 ~~~~i~~~~~~i~~~v~~---~t~~ea~~~~~~G-ad~V~v~g~~~-~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~ 203 (310)
+++.+++...+.++++-. .+.+++.++.+.+ +|+|.+.|..+ ++.. ......
T Consensus 204 ~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~---------------~~~~~~-------- 260 (392)
T cd02808 204 LIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAA---------------PLTFID-------- 260 (392)
T ss_pred HHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCC---------------cccccc--------
Confidence 344444433324554431 2567777777665 99999988744 3310 000000
Q ss_pred hcc-CCcHHHHHHHhhc-------CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 204 KKI-AAPYDLVMQTKQL-------GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 204 ~~~-~~~~~~i~~i~~~-------~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
+. .+....+.++.+. .++||+ ++|||+++.|+.+++.+|||+|.+|++++.+
T Consensus 261 -~~g~pt~~~L~~v~~~~~~~~~~~~i~vi--asGGI~~g~Dv~kalaLGAd~V~ig~~~l~a 320 (392)
T cd02808 261 -HVGLPTELGLARAHQALVKNGLRDRVSLI--ASGGLRTGADVAKALALGADAVGIGTAALIA 320 (392)
T ss_pred -cCCccHHHHHHHHHHHHHHcCCCCCCeEE--EECCCCCHHHHHHHHHcCCCeeeechHHHHh
Confidence 01 1222333333321 368998 7899999999999999999999999999954
No 195
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=98.40 E-value=1.3e-06 Score=79.72 Aligned_cols=94 Identities=26% Similarity=0.445 Sum_probs=70.6
Q ss_pred HHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc
Q 021609 131 NHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 209 (310)
Q Consensus 131 ~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~ 209 (310)
++++.. -.+|+++ ++-+.+||+.|.+.|++.|.|.++++.. +. ...++
T Consensus 216 ~wLr~~-T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQ------------------lD------------~vpAt 264 (363)
T KOG0538|consen 216 KWLRSI-TKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQ------------------LD------------YVPAT 264 (363)
T ss_pred HHHHhc-CcCCeEEEeecccHHHHHHHHhCCceEEEeCCCccc------------------cC------------cccch
Confidence 444432 3566555 6899999999999999998888775411 11 12445
Q ss_pred HHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 210 YDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 210 ~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
++.+.++.+. .++||. ..|||++..|+.+++.+||.+|.+|+.++=
T Consensus 265 I~~L~Evv~aV~~ri~V~--lDGGVR~G~DVlKALALGAk~VfiGRP~v~ 312 (363)
T KOG0538|consen 265 IEALPEVVKAVEGRIPVF--LDGGVRRGTDVLKALALGAKGVFIGRPIVW 312 (363)
T ss_pred HHHHHHHHHHhcCceEEE--EecCcccchHHHHHHhcccceEEecCchhe
Confidence 6666666554 369998 579999999999999999999999998873
No 196
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=98.37 E-value=9.8e-06 Score=77.76 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
++..+.+++.+++||+ +.|||.+++++.++++.| ||.|++|++++. ||. |.+.++++.
T Consensus 278 ~~~~~~ik~~~~~pvi--~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la--dP~-----l~~k~~~g~ 336 (370)
T cd02929 278 EPYIKFVKQVTSKPVV--GVGRFTSPDKMVEVVKSGILDLIGAARPSIA--DPF-----LPKKIREGR 336 (370)
T ss_pred HHHHHHHHHHCCCCEE--EeCCCCCHHHHHHHHHcCCCCeeeechHhhh--Cch-----HHHHHHcCC
Confidence 5667778888899998 679999999999999876 999999999997 786 555555554
No 197
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.36 E-value=6.6e-06 Score=86.06 Aligned_cols=152 Identities=17% Similarity=0.190 Sum_probs=94.9
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCC--CCCC-HHHHHHHHhhc--CcceeeccccCcHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVA--RMSD-PQLIKEIKQSV--TIPVMAKARIGHFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~--~~~~-~~~i~~i~~~~--~iPv~vk~~~~~~~~a 107 (310)
+.|+.+.++|+|+| +++ |. ++..+.+||+- +++. .+.++.|++.+ +.||.++.....+..
T Consensus 555 ~aA~~a~~aGfDgv-eih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~- 632 (765)
T PRK08255 555 AAARRAAEAGFDWL-ELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE- 632 (765)
T ss_pred HHHHHHHHcCCCEE-EEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC-
Confidence 35788899999997 664 32 34555667762 2332 36777778876 578888876431100
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
...+..+.. +-++.+.+.|+|+|.+++......
T Consensus 633 --------------~g~~~~~~~-------------------~~~~~l~~~g~d~i~vs~g~~~~~-------------- 665 (765)
T PRK08255 633 --------------GGNTPDDAV-------------------EIARAFKAAGADLIDVSSGQVSKD-------------- 665 (765)
T ss_pred --------------CCCCHHHHH-------------------HHHHHHHhcCCcEEEeCCCCCCcC--------------
Confidence 011112211 223445677999999874321110
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
..+.. .......+.+++++..++||+ +.|+|.+++++.++++.| ||.|++|++++. ||.
T Consensus 666 --~~~~~----------~~~~~~~~~~~ik~~~~~pv~--~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~--dP~ 725 (765)
T PRK08255 666 --EKPVY----------GRMYQTPFADRIRNEAGIATI--AVGAISEADHVNSIIAAGRADLCALARPHLA--DPA 725 (765)
T ss_pred --CCCCc----------CccccHHHHHHHHHHcCCEEE--EeCCCCCHHHHHHHHHcCCcceeeEcHHHHh--Ccc
Confidence 00000 011123456677777889998 689999999999999765 999999999998 774
No 198
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=98.33 E-value=7.5e-05 Score=67.04 Aligned_cols=44 Identities=27% Similarity=0.495 Sum_probs=38.6
Q ss_pred CCCCCCHH-----------HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 229 AGGVATPA-----------DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 229 ~GGI~t~~-----------d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
.+||+ +. ...++++.|+|+++|||+|++++||...++++.+.+.
T Consensus 174 ~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 174 TPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred cCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence 68985 44 5777889999999999999999999999999988775
No 199
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=98.29 E-value=4.8e-05 Score=67.36 Aligned_cols=46 Identities=28% Similarity=0.500 Sum_probs=39.2
Q ss_pred CCCCCCH-HHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 229 AGGVATP-ADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 229 ~GGI~t~-~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
.|||+.. .++..++++|+|++++||+|++++||...+++|.+.+++
T Consensus 168 dgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~~~~ 214 (215)
T PRK13813 168 SPGIGAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINEEIRG 214 (215)
T ss_pred eCCcCCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHHHHhc
Confidence 5999643 258888999999999999999999999999999887653
No 200
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.26 E-value=4.5e-05 Score=67.86 Aligned_cols=51 Identities=25% Similarity=0.408 Sum_probs=44.8
Q ss_pred cHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHH
Q 021609 209 PYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 209 ~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~ 263 (310)
+.+.++.+++.. ++|++ .+|||++++++.+++.+|||+|++||.+.+ ||..
T Consensus 166 ~~e~i~~v~~~~~~~pl~--vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~--dp~~ 217 (223)
T TIGR01768 166 PPELVAEVKKVLDKARLF--VGGGIRSVEKAREMAEAGADTIVTGNVIEE--DVDK 217 (223)
T ss_pred CHHHHHHHHHHcCCCCEE--EecCCCCHHHHHHHHHcCCCEEEECcHHhh--CHHH
Confidence 367888888876 89998 589999999999999999999999999997 6643
No 201
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=98.25 E-value=0.00018 Score=64.83 Aligned_cols=168 Identities=21% Similarity=0.293 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC--c-----------HHHHH
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG--H-----------FVEAQ 108 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~--~-----------~~~a~ 108 (310)
+.+++-|..++++||+.| +||..- . .+| +.+++..++.+++.+++|+.+..|.. + ..+++
T Consensus 8 v~s~~~a~~A~~~GAdRi-ELc~~L---~-~GG--lTPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~ 80 (248)
T PRK11572 8 CYSMECALTAQQAGADRI-ELCAAP---K-EGG--LTPSLGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIA 80 (248)
T ss_pred ECCHHHHHHHHHcCCCEE-EEccCc---C-CCC--cCCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 356788999999999998 886221 1 122 35668899999999999998876542 1 25678
Q ss_pred HHHHcCCCEEE-e--C-C-CCCchhHHHHHHhcCCCCcEEE----e-cCCHHHHHH-HHHhCCCEEEEcCCCCCcchHHH
Q 021609 109 ILEAIGIDYVD-E--S-E-VLTPADEENHINKHNFRIPFVC----G-CRNLGEALR-RIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 109 ~~~~aGad~Vi-~--~-~-~~~~~~~~~~i~~~~~~i~~~v----~-~~t~~ea~~-~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
.+.+.|+|+|+ + + + .+....+.++++..+ +++++. | +.+..++.. +.++|++-|-++|... ..
T Consensus 81 ~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~-~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~--~a--- 154 (248)
T PRK11572 81 TVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG-PLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQ--DA--- 154 (248)
T ss_pred HHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc-CCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCC--CH---
Confidence 88889999996 2 2 2 234444455554422 222221 2 335555444 6678888887765321 10
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
....+.++++.+. .+.-|+ ++||| +++++.++..+|+..+-....
T Consensus 155 -----------------------------~~g~~~L~~lv~~a~~~~Im--~GgGV-~~~Nv~~l~~tG~~~~H~s~~ 200 (248)
T PRK11572 155 -----------------------------EQGLSLIMELIAASDGPIIM--AGAGV-RLSNLHKFLDAGVREVHSSAG 200 (248)
T ss_pred -----------------------------HHHHHHHHHHHHhcCCCEEE--eCCCC-CHHHHHHHHHcCCCEEeeCCC
Confidence 0113344444332 232244 79999 699999988999998885543
No 202
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.25 E-value=1.6e-05 Score=75.90 Aligned_cols=49 Identities=33% Similarity=0.450 Sum_probs=41.5
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCC------------------CCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGV------------------ATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI------------------~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
+.+.+.+++..++||+ +.||| .|++++.++++.| ||.|++|++++. ||.
T Consensus 269 ~~~~~~~k~~~~~pv~--~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia--dP~ 336 (361)
T cd04747 269 LNLAGWTKKLTGLPTI--TVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS--DPA 336 (361)
T ss_pred hhHHHHHHHHcCCCEE--EECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh--CcH
Confidence 4556667777889998 67998 5899999999865 999999999997 786
No 203
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=98.19 E-value=1.3e-05 Score=73.33 Aligned_cols=87 Identities=22% Similarity=0.274 Sum_probs=62.2
Q ss_pred HHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCC
Q 021609 130 ENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAA 208 (310)
Q Consensus 130 ~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
.+.+++ .+++..+.++++|.++++.+.+.|+|||.+.+... +++
T Consensus 168 v~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~~~--------------------------e~l--------- 212 (265)
T TIGR00078 168 VKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNMKP--------------------------EEI--------- 212 (265)
T ss_pred HHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCH--------------------------HHH---------
Confidence 444444 34568899999999999999999999998854210 000
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+..+.+. ..+|+. |+||| +++++.++.++|+|++.+ ++++.+
T Consensus 213 -k~~v~~~~--~~ipi~--AsGGI-~~~ni~~~a~~Gvd~Isv-gait~s 255 (265)
T TIGR00078 213 -KEAVQLLK--GRVLLE--ASGGI-TLDNLEEYAETGVDVISS-GALTHS 255 (265)
T ss_pred -HHHHHHhc--CCCcEE--EECCC-CHHHHHHHHHcCCCEEEe-CHHHcC
Confidence 11111122 137988 67999 799999999999999999 666653
No 204
>PRK06801 hypothetical protein; Provisional
Probab=98.19 E-value=0.00017 Score=66.67 Aligned_cols=193 Identities=16% Similarity=0.148 Sum_probs=116.1
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.++.-|+++.+. ..+. .| .......++.+.+..++||.+.+--+ ..+.++.+.+.|+
T Consensus 24 n~~n~e~~~avi~AAe~~~~PvIl~~~~~--~~~~-~~--~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~Gf 98 (286)
T PRK06801 24 NVLDSHFLRALFAAAKQERSPFIINIAEV--HFKY-IS--LESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGF 98 (286)
T ss_pred eeCCHHHHHHHHHHHHHHCCCEEEEeCcc--hhhc-CC--HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCC
Confidence 3445654 445577778766666321 1111 11 01123456666777899999975433 4688899999999
Q ss_pred CEE-E-eCCCCCch-------hHHHHHHhcCCCC----cE-------------EEe-cCCHHHHHHHH-HhCCCEEEEcC
Q 021609 116 DYV-D-ESEVLTPA-------DEENHINKHNFRI----PF-------------VCG-CRNLGEALRRI-REGAAMIRTKG 167 (310)
Q Consensus 116 d~V-i-~~~~~~~~-------~~~~~i~~~~~~i----~~-------------~v~-~~t~~ea~~~~-~~Gad~V~v~g 167 (310)
+.| + .+. ++.+ ++.++.+.++..+ -. ..+ -++++++.+.. +.|+|++.+.-
T Consensus 99 tSVm~D~S~-l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvai 177 (286)
T PRK06801 99 SSVMFDGST-LEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAI 177 (286)
T ss_pred cEEEEcCCC-CCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEecc
Confidence 999 3 332 3322 2333333332111 00 001 23558888877 67999988732
Q ss_pred CCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCC
Q 021609 168 EAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD 247 (310)
Q Consensus 168 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gad 247 (310)
++-+- .++ .....+++.++++++..++|+++..+.|| +.+++.+++++|++
T Consensus 178 --Gt~Hg---------------~y~-----------~~~~l~~e~l~~i~~~~~~PLVlHGGSgi-~~e~~~~~i~~Gi~ 228 (286)
T PRK06801 178 --GNAHG---------------KYK-----------GEPKLDFARLAAIHQQTGLPLVLHGGSGI-SDADFRRAIELGIH 228 (286)
T ss_pred --CCCCC---------------CCC-----------CCCCCCHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHHcCCc
Confidence 11110 000 01134588899998888899997744449 58999999999999
Q ss_pred EEEEccccccCCCHHHHHHHHHHHHh
Q 021609 248 GVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 248 gV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
.|-++|.+.. ...+.+.+.+.
T Consensus 229 KINv~T~~~~-----a~~~~~~~~~~ 249 (286)
T PRK06801 229 KINFYTGMSQ-----AALAAVEQRMT 249 (286)
T ss_pred EEEehhHHHH-----HHHHHHHHHHH
Confidence 9999999985 33444545443
No 205
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=98.15 E-value=4.5e-05 Score=72.85 Aligned_cols=164 Identities=21% Similarity=0.287 Sum_probs=97.3
Q ss_pred HHHHHHHHcCCcEEEec--------c-----CCcccccccCCCC--CCC-CHHHHHHHHhhcC--cceeeccccCcHHHH
Q 021609 46 EQARVAEEAGACAVMAL--------E-----RVPADIRSQGGVA--RMS-DPQLIKEIKQSVT--IPVMAKARIGHFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L--------~-----~~~~~~~~~~G~~--~~~-~~~~i~~i~~~~~--iPv~vk~~~~~~~~a 107 (310)
+.|+.+.++|+|+| ++ + ..+...+++|||- +++ ..+.++.++++++ .||.++.....+..
T Consensus 153 ~AA~rA~~AGFDgV-EIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~- 230 (363)
T COG1902 153 RAARRAKEAGFDGV-EIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFD- 230 (363)
T ss_pred HHHHHHHHcCCCEE-EEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCC-
Confidence 46888999999998 43 1 2345556667763 222 2356677787774 45666544321100
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhC-CCEEEEcCCCCCcchHHHHHHHHhhcc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREG-AAMIRTKGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~G-ad~V~v~g~~~~~~~~~~~~~~r~~~~ 186 (310)
....+..+.. +-++.+.+.| +|++-+.++.....
T Consensus 231 -------------~~g~~~~e~~-------------------~la~~L~~~G~~d~i~vs~~~~~~~------------- 265 (363)
T COG1902 231 -------------GGGLTIEEAV-------------------ELAKALEEAGLVDYIHVSEGGYERG------------- 265 (363)
T ss_pred -------------CCCCCHHHHH-------------------HHHHHHHhcCCccEEEeecccccCC-------------
Confidence 0001111111 2244455678 69988776543110
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a 265 (310)
.... + ............++...++|++ +.|+|.+++.+.++++.| ||-|.+|++++. ||.
T Consensus 266 -----~~~~------~-~~~~~~~~~a~~i~~~~~~pvi--~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la--dP~--- 326 (363)
T COG1902 266 -----GTIT------V-SGPGYQVEFAARIKKAVRIPVI--AVGGINDPEQAEEILASGRADLVAMGRPFLA--DPD--- 326 (363)
T ss_pred -----CCcc------c-cccchhHHHHHHHHHhcCCCEE--EeCCCCCHHHHHHHHHcCCCCEEEechhhhc--Ccc---
Confidence 0000 0 0012224455667776779999 679999999999999997 999999999998 775
Q ss_pred HHHHHHHhccCC
Q 021609 266 QAIVRAVTHYSD 277 (310)
Q Consensus 266 ~~l~~~i~~~~~ 277 (310)
|.+.+++...
T Consensus 327 --~~~k~~~g~~ 336 (363)
T COG1902 327 --LVLKAAEGRE 336 (363)
T ss_pred --HHHHHHcCCC
Confidence 4444544443
No 206
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.14 E-value=2.2e-05 Score=72.00 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=64.3
Q ss_pred HHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCC
Q 021609 130 ENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAA 208 (310)
Q Consensus 130 ~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
.+.+++ .+++..+.++++|.+++..+.+.|+|||.+.+..
T Consensus 172 v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~~--------------------------------------- 212 (268)
T cd01572 172 VRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNMS--------------------------------------- 212 (268)
T ss_pred HHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCcC---------------------------------------
Confidence 444444 3346789999999999999999999999875321
Q ss_pred cHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 209 ~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++++.+.. ++|+. |+||| +++++.++.++|+|++.+|+....+
T Consensus 213 -~e~l~~~~~~~~~~ipi~--AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~~a 260 (268)
T cd01572 213 -PEELREAVALLKGRVLLE--ASGGI-TLENIRAYAETGVDYISVGALTHSA 260 (268)
T ss_pred -HHHHHHHHHHcCCCCcEE--EECCC-CHHHHHHHHHcCCCEEEEEeeecCC
Confidence 11223332222 58998 67999 7999999999999999999977643
No 207
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=98.14 E-value=8.4e-05 Score=66.13 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=92.0
Q ss_pred HHHHHHHHhhc-CcceeeccccCc--HHHHHHHHHcCCCEEEeCCCCCchhHHHHHH---hcCCC-CcEEEecCCHHHHH
Q 021609 81 PQLIKEIKQSV-TIPVMAKARIGH--FVEAQILEAIGIDYVDESEVLTPADEENHIN---KHNFR-IPFVCGCRNLGEAL 153 (310)
Q Consensus 81 ~~~i~~i~~~~-~iPv~vk~~~~~--~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~---~~~~~-i~~~v~~~t~~ea~ 153 (310)
++.++++++.+ +.++.+...+.+ ...++.+.++|+|.+.....-....+....+ +++.. .+-+..+.|..++.
T Consensus 44 ~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~~~~g~~~i~~a~~~a~~~~~~~~~~llgV~t~~~~~ 123 (218)
T PRK13305 44 LGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTIICAAPLATVEKGHAVAQRCGGEIQIELFGNWTLDDAR 123 (218)
T ss_pred HHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEecCCCHHHHHHHHHHHHhcCCcccceEEEecCcchHH
Confidence 67888888765 678888665532 2345667799999774222222332222222 11212 22333444444444
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc-cCCcHHHHHHHhhcC--CCCEEEeCCC
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK-IAAPYDLVMQTKQLG--RLPVVHFAAG 230 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~-~~~~~~~i~~i~~~~--~iPVi~iA~G 230 (310)
...+.|.+.+.+|-. . + ....+ .+++.+ ++.+++.. +.++. ..|
T Consensus 124 ~l~~~g~~~~v~h~a--------------~-------------~---a~~~G~v~s~~e-~~~ir~~~~~~~~i~--Vtp 170 (218)
T PRK13305 124 DWHRIGVRQAIYHRG--------------R-------------D---AQASGQQWGEAD-LARMKALSDIGLELS--ITG 170 (218)
T ss_pred HHHHcCCHHHHHHHH--------------H-------------H---HHHhCCCCCHHH-HHHHHHHhCCCCcEE--EeC
Confidence 444555542222210 0 0 00001 123333 34444432 34455 479
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 231 GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
||+ ++.....-+.+.|.++|||+|++++||..+++++.+.++.
T Consensus 171 GIr-~~~~~~~dq~rvd~iVVGR~It~A~dP~~aa~~i~~~i~~ 213 (218)
T PRK13305 171 GIT-PADLPLFKDIRVKAFIAGRALAGAANPAQVAADFHAQIDA 213 (218)
T ss_pred CcC-ccccccccccCCCEEEECCcccCCCCHHHHHHHHHHHHHH
Confidence 995 8888777788999999999999999999999999888854
No 208
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.12 E-value=2.8e-05 Score=71.59 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=64.0
Q ss_pred hhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 127 ADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 127 ~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
.+..+.+++ .++...+.++++|.++++.+.+.|+|||.+... +
T Consensus 175 ~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~~--------------------------~---------- 218 (277)
T PRK08072 175 TKAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDNR--------------------------T---------- 218 (277)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECCC--------------------------C----------
Confidence 344444444 344578999999999999999999999987321 0
Q ss_pred cCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++++.+.. ++|+. |.||| +++++.++.++|+|++.+|+....+
T Consensus 219 ----~e~l~~~~~~~~~~i~i~--AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~sa 266 (277)
T PRK08072 219 ----PDEIREFVKLVPSAIVTE--ASGGI-TLENLPAYGGTGVDYISLGFLTHSV 266 (277)
T ss_pred ----HHHHHHHHHhcCCCceEE--EECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence 12233333322 35666 67999 7999999999999999999866643
No 209
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.12 E-value=0.00019 Score=63.17 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=38.4
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
.+.+.++++++..++|++ .+|||++++++.++++.|||+|++|
T Consensus 163 v~~e~i~~Vk~~~~~Pv~--vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 163 VNPETISLVKKASGIPLI--VGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCHHHHHHHHHhhCCCEE--EeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 347788889888899998 6899999999999989999999997
No 210
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=98.11 E-value=0.00033 Score=61.42 Aligned_cols=166 Identities=23% Similarity=0.310 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc--Cc-----------HHHHH
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI--GH-----------FVEAQ 108 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~--~~-----------~~~a~ 108 (310)
+.+++.+..++++||+.| .||... . .+| +.+++..++.+++.+++|+.+..|. ++ .++++
T Consensus 7 v~s~~~a~~A~~~GAdRi-ELc~~l---~-~GG--lTPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~ 79 (201)
T PF03932_consen 7 VESLEDALAAEAGGADRI-ELCSNL---E-VGG--LTPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIR 79 (201)
T ss_dssp ESSHHHHHHHHHTT-SEE-EEEBTG---G-GT---B---HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEE-EECCCc---c-CCC--cCcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHH
Confidence 356788999999999998 776221 1 122 3466889999999999999887655 21 26678
Q ss_pred HHHHcCCCEEE-e---CCC-CCchhHHHHHHhcCCCCcEEE----e-cCCHHHHHH-HHHhCCCEEEEcCCCCCcchHHH
Q 021609 109 ILEAIGIDYVD-E---SEV-LTPADEENHINKHNFRIPFVC----G-CRNLGEALR-RIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 109 ~~~~aGad~Vi-~---~~~-~~~~~~~~~i~~~~~~i~~~v----~-~~t~~ea~~-~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
.+.+.|+|+++ + .+. +....+.+++...+ +++++. | +.+..++.. +.++|++-|-++|...+
T Consensus 80 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~-~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~------ 152 (201)
T PF03932_consen 80 MLRELGADGFVFGALTEDGEIDEEALEELIEAAG-GMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPT------ 152 (201)
T ss_dssp HHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT-TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSS------
T ss_pred HHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC-CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCC------
Confidence 88889999996 2 222 33344455554422 333221 1 345555554 45788888877764211
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVG 252 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VG 252 (310)
.....+.++++.+. .++.++ ++||| +++++..+.+ +|+..+-.+
T Consensus 153 ----------------------------a~~g~~~L~~lv~~a~~~i~Im--~GgGv-~~~nv~~l~~~tg~~~~H~s 199 (201)
T PF03932_consen 153 ----------------------------ALEGIENLKELVEQAKGRIEIM--PGGGV-RAENVPELVEETGVREIHGS 199 (201)
T ss_dssp ----------------------------TTTCHHHHHHHHHHHTTSSEEE--EESS---TTTHHHHHHHHT-SEEEET
T ss_pred ----------------------------HHHHHHHHHHHHHHcCCCcEEE--ecCCC-CHHHHHHHHHhhCCeEEeec
Confidence 01123444444332 356676 78999 6999999986 899887643
No 211
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.09 E-value=2.5e-05 Score=70.52 Aligned_cols=61 Identities=21% Similarity=0.382 Sum_probs=50.5
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+..+++++++++..++|++ ++|||++.+|+.+++..||++|++|+++++ ||.. .+++.+.+
T Consensus 57 ~~~~~~i~~i~~~~~~pv~--~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~--~p~~-~~~i~~~~ 117 (243)
T cd04731 57 ETMLDVVERVAEEVFIPLT--VGGGIRSLEDARRLLRAGADKVSINSAAVE--NPEL-IREIAKRF 117 (243)
T ss_pred cccHHHHHHHHHhCCCCEE--EeCCCCCHHHHHHHHHcCCceEEECchhhh--ChHH-HHHHHHHc
Confidence 4457888999888889998 789999999999999999999999999997 7753 33355544
No 212
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=98.09 E-value=9.5e-06 Score=77.20 Aligned_cols=118 Identities=22% Similarity=0.174 Sum_probs=83.2
Q ss_pred EEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC
Q 021609 142 FVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR 221 (310)
Q Consensus 142 ~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~ 221 (310)
+..++.+++|+..+...|++.|.+.++++. .+ ....++.+.+.++.+..+
T Consensus 222 v~kGV~~~~D~~~a~~tg~~~I~vsnhggr------------------ql------------D~g~st~~~L~ei~~av~ 271 (360)
T COG1304 222 VLKGILAPEDAAGAGGTGADGIEVSNHGGR------------------QL------------DWGISTADSLPEIVEAVG 271 (360)
T ss_pred HHhCCCCHHHHHhhccCCceEEEEEcCCCc------------------cc------------cCCCChHHHHHHHHHHhC
Confidence 444677889999999999999888765431 00 012455777777877654
Q ss_pred --CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCcc
Q 021609 222 --LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 299 (310)
Q Consensus 222 --iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (310)
+||+ ++|||++..|+.+++.+||++|.+|+.++. + .+..=...+ .+.+..+.+++-.+|...|.+.
T Consensus 272 ~~~~vi--~dGGiR~G~Dv~KAlALGA~~v~igrp~L~---~--l~~~g~~GV-----~~~le~~~~El~~~M~L~G~~~ 339 (360)
T COG1304 272 DRIEVI--ADGGIRSGLDVAKALALGADAVGIGRPFLY---G--LAAGGEAGV-----ERVLEIIRKELKIAMALTGAKN 339 (360)
T ss_pred CCeEEE--ecCCCCCHHHHHHHHHhCCchhhhhHHHHH---H--HHhccHHHH-----HHHHHHHHHHHHHHHHhcCCCc
Confidence 8888 899999999999999999999999998885 1 111111111 1334567777778888888776
Q ss_pred ch
Q 021609 300 HK 301 (310)
Q Consensus 300 ~~ 301 (310)
++
T Consensus 340 i~ 341 (360)
T COG1304 340 IE 341 (360)
T ss_pred HH
Confidence 64
No 213
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.08 E-value=0.0003 Score=60.57 Aligned_cols=153 Identities=24% Similarity=0.283 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc---CcceeeccccC--------cHHHHHHHHHcC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV---TIPVMAKARIG--------HFVEAQILEAIG 114 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~---~iPv~vk~~~~--------~~~~a~~~~~aG 114 (310)
++++.+.+.|++++ .++ .+.++.+++.+ .+|++++.... ..+.++.+.++|
T Consensus 17 ~~~~~~~~~gv~gi-~~~-----------------g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~G 78 (201)
T cd00945 17 KLCDEAIEYGFAAV-CVN-----------------PGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLG 78 (201)
T ss_pred HHHHHHHHhCCcEE-EEC-----------------HHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC
Confidence 56778888999987 321 24555555443 48888865332 136678889999
Q ss_pred CCEEEeC-C-C--CC--chhHHHHHHh---c-CCCCcEEEecC-----CHHHHHH----HHHhCCCEEEEcCCCCCcchH
Q 021609 115 IDYVDES-E-V--LT--PADEENHINK---H-NFRIPFVCGCR-----NLGEALR----RIREGAAMIRTKGEAGTGNII 175 (310)
Q Consensus 115 ad~Vi~~-~-~--~~--~~~~~~~i~~---~-~~~i~~~v~~~-----t~~ea~~----~~~~Gad~V~v~g~~~~~~~~ 175 (310)
+|++... . . .+ ...+.+.+++ . ..++++++... +.++..+ +.+.|++.|+.......+
T Consensus 79 ad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~--- 155 (201)
T cd00945 79 ADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGG--- 155 (201)
T ss_pred CCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCC---
Confidence 9999632 2 1 11 2333333332 2 13566665433 4444433 346799999876321100
Q ss_pred HHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 176 ~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
..+++.++.+.+.. ++|++ +.||+.+++++..++..|++|+++|
T Consensus 156 -------------------------------~~~~~~~~~i~~~~~~~~~v~--~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 156 -------------------------------GATVEDVKLMKEAVGGRVGVK--AAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred -------------------------------CCCHHHHHHHHHhcccCCcEE--EECCCCCHHHHHHHHHhccceeecC
Confidence 11233444454433 56887 5699988999999999999999875
No 214
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.08 E-value=3.4e-05 Score=71.31 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=67.8
Q ss_pred hhHHHHHHhc-CCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 127 ADEENHINKH-NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 127 ~~~~~~i~~~-~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
.+....+++. ++...+.++++|.+|+..+.++|+|+|.+.+... +++
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~~~--------------------------e~l------ 230 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNMPV--------------------------DLM------ 230 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCCCH--------------------------HHH------
Confidence 3444455542 3457899999999999999999999998864321 111
Q ss_pred cCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 206 IAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 206 ~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.+.+..+++ ..++|+. |+||| +++++.++.++|+|++.+|+.+.+++
T Consensus 231 ----~~av~~~~~~~~~i~le--AsGGI-t~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 231 ----QQAVQLIRQQNPRVKIE--ASGNI-TLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred ----HHHHHHHHhcCCCeEEE--EECCC-CHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 111222221 2467877 78999 79999999999999999999998754
No 215
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=98.05 E-value=2.7e-05 Score=71.60 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=63.3
Q ss_pred hHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccC
Q 021609 128 DEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA 207 (310)
Q Consensus 128 ~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~ 207 (310)
+..+.+++..++..+.++++|.+++.++.+.|+|+|.+.+...+ .
T Consensus 172 ~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~~p~-~---------------------------------- 216 (272)
T cd01573 172 KALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKFSPE-E---------------------------------- 216 (272)
T ss_pred HHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCCCHH-H----------------------------------
Confidence 34445544444567899999999999999999999998642110 0
Q ss_pred CcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 208 APYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 208 ~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
..+.++.+++. .++|++ |+||| +++++.++.++|+|+++ .++++.
T Consensus 217 -l~~~~~~~~~~~~~i~i~--AsGGI-~~~ni~~~~~~Gvd~I~-vsai~~ 262 (272)
T cd01573 217 -LAELVPKLRSLAPPVLLA--AAGGI-NIENAAAYAAAGADILV-TSAPYY 262 (272)
T ss_pred -HHHHHHHHhccCCCceEE--EECCC-CHHHHHHHHHcCCcEEE-EChhhc
Confidence 01233334332 368988 67999 79999999999999995 455554
No 216
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.05 E-value=3.9e-05 Score=70.61 Aligned_cols=89 Identities=18% Similarity=0.241 Sum_probs=64.0
Q ss_pred HHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCC
Q 021609 129 EENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAA 208 (310)
Q Consensus 129 ~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
..+.+++..++..+.++++|.+++..+.+.|+|+|.+.+.+ ++++
T Consensus 179 av~~~r~~~~~~~I~VEv~tleea~eA~~~gaD~I~LD~~~--------------------------~e~l--------- 223 (277)
T PRK05742 179 AVAAAHRIAPGKPVEVEVESLDELRQALAAGADIVMLDELS--------------------------LDDM--------- 223 (277)
T ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCCC--------------------------HHHH---------
Confidence 34444444456789999999999999999999999774321 1110
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.++ .++|+. |+||| +++++.++.++|+|++.+|+....+
T Consensus 224 -~~~v~~~~--~~i~le--AsGGI-t~~ni~~~a~tGvD~Isvg~lt~s~ 267 (277)
T PRK05742 224 -REAVRLTA--GRAKLE--ASGGI-NESTLRVIAETGVDYISIGAMTKDV 267 (277)
T ss_pred -HHHHHHhC--CCCcEE--EECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence 01111121 368998 77999 7999999999999999999977654
No 217
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=98.04 E-value=3.8e-05 Score=70.56 Aligned_cols=91 Identities=21% Similarity=0.258 Sum_probs=64.1
Q ss_pred hHHHHHHhc-CCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc
Q 021609 128 DEENHINKH-NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI 206 (310)
Q Consensus 128 ~~~~~i~~~-~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~ 206 (310)
...+.+++. +++..+.++++|.+|+..+.+.|+|+|.+.+... +.+
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~~--------------------------e~l------- 215 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMSP--------------------------EEL------- 215 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCH--------------------------HHH-------
Confidence 334555553 3468899999999999999999999999854211 000
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.+.++.+++..++|+. ++||| +++++.++.++|+|++.+|+.+..
T Consensus 216 ---~~~v~~i~~~~~i~i~--asGGI-t~~ni~~~a~~Gad~Isvgal~~s 260 (269)
T cd01568 216 ---KEAVKLLKGLPRVLLE--ASGGI-TLENIRAYAETGVDVISTGALTHS 260 (269)
T ss_pred ---HHHHHHhccCCCeEEE--EECCC-CHHHHHHHHHcCCCEEEEcHHHcC
Confidence 1122223222367887 67999 799999999999999999655544
No 218
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=98.03 E-value=0.0023 Score=56.70 Aligned_cols=184 Identities=23% Similarity=0.274 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC--c-ceeeccccCcHHHHHHHHHcCCCE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT--I-PVMAKARIGHFVEAQILEAIGIDY 117 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~--i-Pv~vk~~~~~~~~a~~~~~aGad~ 117 (310)
+++++.|+.+.++|++.+ +.+. ..|.+.-+++..+++.+.+. + +|.+-......+-.+.+.+.+.|.
T Consensus 10 i~~~eda~~~~~~Gad~iGfI~~---------~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d~ 80 (210)
T PRK01222 10 ITTPEDAEAAAELGADAIGFVFY---------PKSPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLDL 80 (210)
T ss_pred CCcHHHHHHHHHcCCCEEEEccC---------CCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCCE
Confidence 688999999999999987 3221 12323345778888876653 2 333322212234446778899999
Q ss_pred EEeCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHH--hCCCEEEEcCC----CCCcchHHHHHHHHhhccceEe
Q 021609 118 VDESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIR--EGAAMIRTKGE----AGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 118 Vi~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~--~Gad~V~v~g~----~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
|-.+...++..+ +.++. .+..+.-.+.+.+..+...+.+ ..+|++-+... +++|
T Consensus 81 vQLHg~e~~~~~-~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG------------------ 141 (210)
T PRK01222 81 LQLHGDETPEFC-RQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTG------------------ 141 (210)
T ss_pred EEECCCCCHHHH-HHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCC------------------
Confidence 954444444333 44443 2233444445554433333322 25677665432 1222
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccC---CCHHHHHH
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS---GDPVKRAQ 266 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a---~dp~~~a~ 266 (310)
..-+|..+. .+ .+.|++ .+||| +++++.+++. .+++||=+.|.+=.+ .|+. ..+
T Consensus 142 ---------------~~~dw~~l~--~~-~~~p~~--LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~~~G~KD~~-ki~ 199 (210)
T PRK01222 142 ---------------KTFDWSLLP--AG-LAKPWI--LAGGL-NPDNVAEAIRQVRPYGVDVSSGVESAPGIKDPE-KIR 199 (210)
T ss_pred ---------------CccchHHhh--hc-cCCCEE--EECCC-CHHHHHHHHHhcCCCEEEecCceECCCCCcCHH-HHH
Confidence 122354441 12 246898 47999 7999999996 599999999999863 3654 444
Q ss_pred HHHHHHhcc
Q 021609 267 AIVRAVTHY 275 (310)
Q Consensus 267 ~l~~~i~~~ 275 (310)
+|++.++.+
T Consensus 200 ~f~~~~~~~ 208 (210)
T PRK01222 200 AFIEAVKSA 208 (210)
T ss_pred HHHHHHHhh
Confidence 576666543
No 219
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.98 E-value=3.9e-05 Score=69.70 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=50.4
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
..+++.++++++..++|++ ++|||++.+|+.+++..||++|++|+.+++ ||.. .+++.+.+
T Consensus 60 ~~~~~~i~~i~~~~~ipv~--~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~--~p~~-~~ei~~~~ 120 (253)
T PRK02083 60 DTMLDVVERVAEQVFIPLT--VGGGIRSVEDARRLLRAGADKVSINSAAVA--NPEL-ISEAADRF 120 (253)
T ss_pred cchHHHHHHHHHhCCCCEE--eeCCCCCHHHHHHHHHcCCCEEEEChhHhh--CcHH-HHHHHHHc
Confidence 4568889999888889998 789999999999999999999999999997 6753 33344443
No 220
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.98 E-value=0.00037 Score=61.72 Aligned_cols=58 Identities=28% Similarity=0.541 Sum_probs=44.9
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
+.+.++++.+. .|++ -.|||+++++++++.++|||.+++|+.+.+ +| ..+.+.+.+++
T Consensus 181 ~~e~v~~v~~~--~~Li--vGGGIrs~E~A~~~a~agAD~IVtG~iiee--~~-~~~~~~v~~~k 238 (240)
T COG1646 181 PVEMVSRVLSD--TPLI--VGGGIRSPEQAREMAEAGADTIVTGTIIEE--DP-DKALETVEAIK 238 (240)
T ss_pred CHHHHHHhhcc--ceEE--EcCCcCCHHHHHHHHHcCCCEEEECceeec--CH-HHHHHHHHHhh
Confidence 35666666653 3787 589999999999999999999999999997 66 44444665554
No 221
>PRK08185 hypothetical protein; Provisional
Probab=97.95 E-value=0.0014 Score=60.60 Aligned_cols=184 Identities=16% Similarity=0.143 Sum_probs=111.3
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.+..-|+++.+. ..+. .|. .....++.+.+..++||.+.+--+ ..+.++.+.+.|.
T Consensus 19 N~~n~e~~~avi~AAee~~sPvIl~~~~~--~~~~-~~~---~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf 92 (283)
T PRK08185 19 NVADSCFLRAVVEEAEANNAPAIIAIHPN--ELDF-LGD---NFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAIRCGF 92 (283)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEeCcc--hhhh-ccH---HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 3445554 445677888876666321 1111 111 124566666777899999875433 5688899999999
Q ss_pred CEEE-eCCCCCchh-------HHHHHHhcCC------C-C-------cEEEe---cCCHHHHHHHHHh-CCCEEEEcCCC
Q 021609 116 DYVD-ESEVLTPAD-------EENHINKHNF------R-I-------PFVCG---CRNLGEALRRIRE-GAAMIRTKGEA 169 (310)
Q Consensus 116 d~Vi-~~~~~~~~~-------~~~~i~~~~~------~-i-------~~~v~---~~t~~ea~~~~~~-Gad~V~v~g~~ 169 (310)
+.|. -...++..+ +.++.+.++. + + ....+ .++++++.+..+. |+|++.+.-.+
T Consensus 93 ~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt 172 (283)
T PRK08185 93 TSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGT 172 (283)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCc
Confidence 9994 222244332 2233333221 1 1 00111 4588999998865 99999873111
Q ss_pred CCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 170 GTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
-.+ ++++-. ...-+++.++++++..++|+++..+.|+ ..+++.++...|..=|
T Consensus 173 ~HG-----------------~y~~~~---------kp~L~~e~l~~I~~~~~iPLVlHGgsg~-~~e~~~~ai~~GI~Ki 225 (283)
T PRK08185 173 AHG-----------------IYPKDK---------KPELQMDLLKEINERVDIPLVLHGGSAN-PDAEIAESVQLGVGKI 225 (283)
T ss_pred ccC-----------------CcCCCC---------CCCcCHHHHHHHHHhhCCCEEEECCCCC-CHHHHHHHHHCCCeEE
Confidence 000 111100 1123488999999888999997744444 3578889999999999
Q ss_pred EEcccccc
Q 021609 250 FVGSGVFK 257 (310)
Q Consensus 250 ~VGsai~~ 257 (310)
=+++.+..
T Consensus 226 Ni~T~l~~ 233 (283)
T PRK08185 226 NISSDMKY 233 (283)
T ss_pred EeChHHHH
Confidence 99998875
No 222
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=97.95 E-value=0.0001 Score=70.60 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=44.6
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
..+.+.+++.+++||+ +.|++ +++.+.++++.| ||.|.+|++++. ||. |.+.+.+..+
T Consensus 281 ~~~~~~ik~~~~~pv~--~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia--dPd-----~~~k~~~g~~ 339 (362)
T PRK10605 281 DAFREKVRARFHGVII--GAGAY-TAEKAETLIGKGLIDAVAFGRDYIA--NPD-----LVARLQRKAE 339 (362)
T ss_pred HHHHHHHHHHCCCCEE--EeCCC-CHHHHHHHHHcCCCCEEEECHHhhh--Ccc-----HHHHHhcCCC
Confidence 3455677777788998 56886 899999999887 999999999997 775 4444555443
No 223
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.92 E-value=5.6e-05 Score=68.81 Aligned_cols=52 Identities=23% Similarity=0.438 Sum_probs=46.4
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
...+++++++++..++||+ ++|||++.+|+.+++.+||+.|++|+++++ ||.
T Consensus 60 ~~n~~~i~~i~~~~~~pv~--~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~--~p~ 111 (254)
T TIGR00735 60 TTMIDVVERTAETVFIPLT--VGGGIKSIEDVDKLLRAGADKVSINTAAVK--NPE 111 (254)
T ss_pred hhhHHHHHHHHHhcCCCEE--EECCCCCHHHHHHHHHcCCCEEEEChhHhh--ChH
Confidence 3457788889888889998 789999999999999999999999999997 775
No 224
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.92 E-value=8e-05 Score=68.39 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=66.3
Q ss_pred chhHHHHHHhcCC-CCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 126 PADEENHINKHNF-RIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~i~~~~~-~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+..+.++...+ ...+.+++.|.+|+..+.++|+|+|.+-+.. ++.+
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~~--------------------------~e~l----- 216 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNMS--------------------------VEEI----- 216 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCCC--------------------------HHHH-----
Confidence 3455566655444 4789999999999999999999999875421 0000
Q ss_pred ccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 205 KIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.++. ..++.+. |+||| |++++.++.++|+|.+.+|+.+..+
T Consensus 217 -----~~~v~~~~~~~~~~~ie--AsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa 263 (273)
T PRK05848 217 -----KEVVAYRNANYPHVLLE--ASGNI-TLENINAYAKSGVDAISSGSLIHQA 263 (273)
T ss_pred -----HHHHHHhhccCCCeEEE--EECCC-CHHHHHHHHHcCCCEEEeChhhcCC
Confidence 111222221 1234455 89999 8999999999999999999988864
No 225
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=97.90 E-value=0.00045 Score=64.21 Aligned_cols=205 Identities=20% Similarity=0.234 Sum_probs=117.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccC-CCCCCCCHHHHHHHHhhcCcceeeccccCc-----------HHHHHHHHHc
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQG-GVARMSDPQLIKEIKQSVTIPVMAKARIGH-----------FVEAQILEAI 113 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~-G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~-----------~~~a~~~~~a 113 (310)
++|..|-+.|||.++-||-.. .|..- +. .+.++.+++..+.+.+|+.+...+.+ .+.+..+...
T Consensus 273 ~Laq~Yyq~GADEv~FLNITs--FRdcPl~D--~PMlqVL~qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~YFRS 348 (541)
T KOG0623|consen 273 DLAQQYYQDGADEVSFLNITS--FRDCPLGD--LPMLQVLRQAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEYFRS 348 (541)
T ss_pred HHHHHHHhcCCceeEEEeecc--ccCCCccc--ChHHHHHHHhhceEEEEEeecCcccccccCCCcCchhHHHHHHHHhc
Confidence 789999999999997787111 11111 11 11234555555667899998654421 3667889999
Q ss_pred CCCEE-EeCCCCCc-------------hhHHHHHHh-cCCCCcEEEec--C-----CHHHHH----HHHHhCC------C
Q 021609 114 GIDYV-DESEVLTP-------------ADEENHINK-HNFRIPFVCGC--R-----NLGEAL----RRIREGA------A 161 (310)
Q Consensus 114 Gad~V-i~~~~~~~-------------~~~~~~i~~-~~~~i~~~v~~--~-----t~~ea~----~~~~~Ga------d 161 (310)
|||.| +++++... ..-++.+.+ ++. ..+.+++ + .+++.. +....|+ |
T Consensus 349 GADKvSIGsDAVyAAEkyye~G~k~~Gks~iEtISkaYGn-QAVViSvDPkRvYVn~p~Dtk~kV~~t~~pGPNGE~YcW 427 (541)
T KOG0623|consen 349 GADKVSIGSDAVYAAEKYYESGVKGTGKSSIETISKAYGN-QAVVISVDPKRVYVNHPDDTKYKVIRTTNPGPNGEEYCW 427 (541)
T ss_pred CCceeeechhHHHHHHHHHHhccCCCCcChHHHHHHHhCC-eeEEEEeCCceeeecCCccCcceEEEecCCCCCCceeEE
Confidence 99999 46654211 112233333 332 2233322 1 222211 1112222 1
Q ss_pred E-EEEcC-CCCCc-chHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHH
Q 021609 162 M-IRTKG-EAGTG-NIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADA 238 (310)
Q Consensus 162 ~-V~v~g-~~~~~-~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~ 238 (310)
| ..+.| +.+.+ ...+.-+++.++-...-++..++.|+ .+.+.++++++.+++.+++||| |+.|-.+|++.
T Consensus 428 YQCTvkGGRE~Rdigv~ELtrAcEalGAGEiLLNCiD~DG-----sn~GyDieLv~lvkdsV~IPVI--ASSGAG~P~HF 500 (541)
T KOG0623|consen 428 YQCTVKGGREGRDIGVFELTRACEALGAGEILLNCIDCDG-----SNKGYDIELVKLVKDSVGIPVI--ASSGAGTPDHF 500 (541)
T ss_pred EEEEEcCCcccCccchhhHHHHHHHhCcchheeeeeccCC-----CCCCcchhHHHHhhcccCCceE--ecCCCCCcHHH
Confidence 2 12332 22211 11233344433333344555544432 1346679999999999999998 89999999999
Q ss_pred HHHH-HcCCCEEEEccccccCCCHH
Q 021609 239 AMMM-QLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 239 ~~~l-~~GadgV~VGsai~~a~dp~ 262 (310)
.++. +..||+.+....|.+.+-|.
T Consensus 501 eEvF~kT~adAaLaAGiFHR~e~~i 525 (541)
T KOG0623|consen 501 EEVFEKTNADAALAAGIFHRKEVPI 525 (541)
T ss_pred HHHHHhcCchhhhhccceecCccch
Confidence 9998 68899998887777755543
No 226
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=97.89 E-value=0.003 Score=55.65 Aligned_cols=184 Identities=26% Similarity=0.297 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cc-eeeccccCcHHHHHHHHHcCCCEE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IP-VMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iP-v~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+++++.|+.+.++||+.+ +...+ .|-+..+++..+++.+... ++ |.+...-...+..+.+.+.+.|.|
T Consensus 9 lt~~eda~~a~~~gad~iG~If~~---------~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~V 79 (208)
T COG0135 9 LTRLEDAKAAAKAGADYIGFIFVP---------KSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAV 79 (208)
T ss_pred CCCHHHHHHHHHcCCCEEEEEEcC---------CCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEE
Confidence 688999999999999987 22211 1223445788888877654 33 222221112234467778999999
Q ss_pred EeCCCCCchhHHHHHHhcC-CCCcEEEecCCHHH--HHHHHHhCCCEEEEcCC-----CCCcchHHHHHHHHhhccceEe
Q 021609 119 DESEVLTPADEENHINKHN-FRIPFVCGCRNLGE--ALRRIREGAAMIRTKGE-----AGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~-~~i~~~v~~~t~~e--a~~~~~~Gad~V~v~g~-----~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
-.+...+++.+ +.++... ..+.-.+.+....+ .......-+|.+-+-.. +++|
T Consensus 80 QlHG~e~~~~~-~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG------------------ 140 (208)
T COG0135 80 QLHGDEDPEYI-DQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTG------------------ 140 (208)
T ss_pred EECCCCCHHHH-HHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCC------------------
Confidence 54444444444 4444432 33443444443212 22222334566655432 2222
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCC-CEEEEccccccC---CCHHHHHH
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGC-DGVFVGSGVFKS---GDPVKRAQ 266 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Ga-dgV~VGsai~~a---~dp~~~a~ 266 (310)
..-+|..+... ....|++ .+||+ +++|+.++++.++ .||=+.|.+=.+ .||.+ .+
T Consensus 141 ---------------~~fDW~~l~~~--~~~~~~~--LAGGL-~p~NV~~ai~~~~p~gvDvSSGVE~~pG~KD~~k-v~ 199 (208)
T COG0135 141 ---------------QTFDWNLLPKL--RLSKPVM--LAGGL-NPDNVAEAIALGPPYGVDVSSGVESSPGIKDPAK-VK 199 (208)
T ss_pred ---------------cEECHHHhccc--cccCCEE--EECCC-CHHHHHHHHHhcCCceEEeccccccCCCCCCHHH-HH
Confidence 12246655544 2456887 47999 7999999999988 999999999876 37654 34
Q ss_pred HHHHHHhc
Q 021609 267 AIVRAVTH 274 (310)
Q Consensus 267 ~l~~~i~~ 274 (310)
+|++.++.
T Consensus 200 ~f~~~vk~ 207 (208)
T COG0135 200 AFFEAVKR 207 (208)
T ss_pred HHHHHHhc
Confidence 47766653
No 227
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=97.86 E-value=0.00051 Score=64.65 Aligned_cols=196 Identities=19% Similarity=0.213 Sum_probs=105.7
Q ss_pred cCCCHH-HHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh--cCcceeeccccC------------cHH
Q 021609 41 DVVTPE-QARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS--VTIPVMAKARIG------------HFV 105 (310)
Q Consensus 41 ~~~~~~-~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~--~~iPv~vk~~~~------------~~~ 105 (310)
...+++ ..+.+.++|++++ .+. .-.++..... .++|++++..-+ .+-
T Consensus 89 gl~dp~~~i~~a~~~g~dAv-~~~-----------------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~ 150 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAV-AST-----------------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTA 150 (348)
T ss_pred cccCHHHHHHHHHhcCCCEE-EeC-----------------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCccccee
Confidence 455665 6677788999997 220 1233332211 257777763211 123
Q ss_pred HHHHHHHcCCCEEEeC----CCCC---chhHHHHHHh-cCCCCcEEEe--cC-----CH----------HH-HHHHHHhC
Q 021609 106 EAQILEAIGIDYVDES----EVLT---PADEENHINK-HNFRIPFVCG--CR-----NL----------GE-ALRRIREG 159 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~----~~~~---~~~~~~~i~~-~~~~i~~~v~--~~-----t~----------~e-a~~~~~~G 159 (310)
.++.+.+.|||+|-.+ +..+ ..++.+...+ +..++++++- .. +. .. ++.+.++|
T Consensus 151 sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELG 230 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIG 230 (348)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHc
Confidence 4788999999999411 1111 2344444433 4567776652 11 11 11 34456899
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccc--eEeecccChhHHHHhhhccCCcHHHHHHHhhcC---CCCEEEeCCCCCC-
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGD--IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG---RLPVVHFAAGGVA- 233 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~--~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~---~iPVi~iA~GGI~- 233 (310)
+|+|++.-++ +.. ..+.+ -... .+.+.. .....+.+..+.+.+.. ++||+ .+||=+
T Consensus 231 ADIVKv~yp~---~~~-~f~~v--~~~~~~~~~~~~----------~~~~~~~~~~~~~V~ac~ag~vpVv--iAGG~k~ 292 (348)
T PRK09250 231 ADIIKQKLPT---NNG-GYKAI--NFGKTDDRVYSK----------LTSDHPIDLVRYQVANCYMGRRGLI--NSGGASK 292 (348)
T ss_pred CCEEEecCCC---Chh-hHHHh--hccccccccccc----------ccccchHHHHHHHHHhhccCCceEE--EeCCCCC
Confidence 9999986432 100 00000 0000 000000 01233445555555544 78998 356655
Q ss_pred CH----HHHHHH---HHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 234 TP----ADAAMM---MQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 234 t~----~d~~~~---l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
+. +.+..+ ++.|+.|+++||-+++++++... +|.+++..
T Consensus 293 ~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~~ea~--~~~~~i~~ 338 (348)
T PRK09250 293 GEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPMAEGV--KLLNAIQD 338 (348)
T ss_pred CHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCcHHHH--HHHHHHHH
Confidence 33 335667 77899999999999999887633 35555554
No 228
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.77 E-value=0.0012 Score=65.80 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=33.2
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEecc
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALE 63 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~ 63 (310)
..+++++|+++ +.|.++++.++|.++.++|.-+++.-|
T Consensus 45 ~~~~l~~Pii~----a~M~~vt~~~ma~a~a~~GglGvi~~~ 82 (495)
T PTZ00314 45 RNIRLKIPIVS----SPMDTVTEHKMAIAMALMGGIGVIHNN 82 (495)
T ss_pred CCcccCCceee----cCccccccHHHHHHHHHCCCeEEecCC
Confidence 46789999998 789999999999999999999886544
No 229
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=97.75 E-value=0.0031 Score=57.19 Aligned_cols=192 Identities=22% Similarity=0.223 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHcCCcEEEeccCCcccccccC-CCC--CC---CCHHHHHHH----Hhhc-CcceeeccccC-----cHHH
Q 021609 43 VTPEQARVAEEAGACAVMALERVPADIRSQG-GVA--RM---SDPQLIKEI----KQSV-TIPVMAKARIG-----HFVE 106 (310)
Q Consensus 43 ~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~-G~~--~~---~~~~~i~~i----~~~~-~iPv~vk~~~~-----~~~~ 106 (310)
.+--.|+..+++|+|-|+.+|.-. .|..| ||- ++ ...+.+.++ --.+ ++||++...-. ....
T Consensus 23 GtGlsAk~ae~gGaDlI~~ynsGr--fR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPViaGv~atDP~~~~~~f 100 (268)
T PF09370_consen 23 GTGLSAKCAEKGGADLILIYNSGR--FRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVIAGVCATDPFRDMDRF 100 (268)
T ss_dssp SSHHHHHHHHHTT-SEEEE-HHHH--HHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EEEEE-TT-TT--HHHH
T ss_pred ccchhhHHHHhcCCCEEEEecchh--HhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEEEEecCcCCCCcHHHH
Confidence 344678899999999888887110 01111 110 11 112333333 2233 69999864321 2466
Q ss_pred HHHHHHcCCCEEEeCC----------------CCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEc-CC
Q 021609 107 AQILEAIGIDYVDESE----------------VLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTK-GE 168 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~----------------~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~-g~ 168 (310)
.+.+.+.|..+|..-. .+....-+++++. +..++..+.-+.|.+++++..++|+|++.+| |+
T Consensus 101 l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~Gl 180 (268)
T PF09370_consen 101 LDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGL 180 (268)
T ss_dssp HHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS
T ss_pred HHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCc
Confidence 7889999999996211 1222333455555 5567778888899999999999999999988 44
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHH-c-C
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQ-L-G 245 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~-~-G 245 (310)
+..+.+- + -+..+-++ + .....++.+..++. .++-+++ -.|-|.+|+|+..+++ + |
T Consensus 181 T~gG~~G-a-------------~~~~sl~~----a--~~~~~~i~~aa~~v~~dii~l~-hGGPI~~p~D~~~~l~~t~~ 239 (268)
T PF09370_consen 181 TTGGSIG-A-------------KTALSLEE----A--AERIQEIFDAARAVNPDIIVLC-HGGPIATPEDAQYVLRNTKG 239 (268)
T ss_dssp ------------------------S--HHH----H--HHHHHHHHHHHHCC-TT-EEEE-ECTTB-SHHHHHHHHHH-TT
T ss_pred cCCCCcC-c-------------cccCCHHH----H--HHHHHHHHHHHHHhCCCeEEEE-eCCCCCCHHHHHHHHhcCCC
Confidence 4333211 0 00000000 0 00001122222222 2344443 4778999999999995 3 5
Q ss_pred CCEEEEcccccc
Q 021609 246 CDGVFVGSGVFK 257 (310)
Q Consensus 246 adgV~VGsai~~ 257 (310)
++|..-||++=+
T Consensus 240 ~~Gf~G~Ss~ER 251 (268)
T PF09370_consen 240 IHGFIGASSMER 251 (268)
T ss_dssp EEEEEESTTTTH
T ss_pred CCEEecccchhh
Confidence 899999999886
No 230
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.73 E-value=0.0012 Score=60.78 Aligned_cols=126 Identities=14% Similarity=0.083 Sum_probs=81.8
Q ss_pred Ccceee--ccccCcHHHHHHHHHcCCCEEE---eCCC--------------CCchhHHHHHHhcCCCCcEEEecCCHHHH
Q 021609 92 TIPVMA--KARIGHFVEAQILEAIGIDYVD---ESEV--------------LTPADEENHINKHNFRIPFVCGCRNLGEA 152 (310)
Q Consensus 92 ~iPv~v--k~~~~~~~~a~~~~~aGad~Vi---~~~~--------------~~~~~~~~~i~~~~~~i~~~v~~~t~~ea 152 (310)
++.+.. |...+.....+.+..+|..... .++. .+..+..+.+++..+...+.+++.|.+++
T Consensus 122 ~~~I~~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea 201 (277)
T TIGR01334 122 MAVVACTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQA 201 (277)
T ss_pred CCEEEecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHH
Confidence 344444 3333444556677777776654 1222 02344555555544567799999999999
Q ss_pred HHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh-cCCCCEEEeCCCC
Q 021609 153 LRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ-LGRLPVVHFAAGG 231 (310)
Q Consensus 153 ~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~-~~~iPVi~iA~GG 231 (310)
..+.++|+|+|.+++.. ++++ .+.++.+++ ..++.+. ++||
T Consensus 202 ~ea~~~GaDiI~lDn~~--------------------------~e~l----------~~~v~~l~~~~~~~~le--asGG 243 (277)
T TIGR01334 202 LTVLQASPDILQLDKFT--------------------------PQQL----------HHLHERLKFFDHIPTLA--AAGG 243 (277)
T ss_pred HHHHHcCcCEEEECCCC--------------------------HHHH----------HHHHHHHhccCCCEEEE--EECC
Confidence 99999999999987531 1111 122333332 1233444 7999
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccc
Q 021609 232 VATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 232 I~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
| +++++.+...+|+|.+++|+..+
T Consensus 244 I-~~~ni~~ya~~GvD~is~gal~~ 267 (277)
T TIGR01334 244 I-NPENIADYIEAGIDLFITSAPYY 267 (277)
T ss_pred C-CHHHHHHHHhcCCCEEEeCccee
Confidence 9 79999999999999999988644
No 231
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.72 E-value=0.00029 Score=62.95 Aligned_cols=60 Identities=20% Similarity=0.465 Sum_probs=48.7
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
...++.++++++..++|+. ..|||++++++.++++.|||.|++|+..+. ||.. .+++.+.
T Consensus 59 ~~~~~~i~~i~~~~~~pv~--~~GgI~~~e~~~~~~~~Gad~vvigs~~l~--dp~~-~~~i~~~ 118 (234)
T cd04732 59 PVNLELIEEIVKAVGIPVQ--VGGGIRSLEDIERLLDLGVSRVIIGTAAVK--NPEL-VKELLKE 118 (234)
T ss_pred CCCHHHHHHHHHhcCCCEE--EeCCcCCHHHHHHHHHcCCCEEEECchHHh--ChHH-HHHHHHH
Confidence 3457788888887889998 689999999999999999999999999996 6653 3334443
No 232
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.0062 Score=53.92 Aligned_cols=165 Identities=26% Similarity=0.338 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc--Cc-----------HHHHH
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI--GH-----------FVEAQ 108 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~--~~-----------~~~a~ 108 (310)
+.+++-+..++++||+.+ +||.... .||. .+++-.++.+++..++|+....|. ++ .++++
T Consensus 8 ven~~~l~~A~~~GAdRi-ELC~~La----~GG~--TPSyG~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~ 80 (241)
T COG3142 8 VENVEGLLAAQAAGADRI-ELCDALA----EGGL--TPSYGVIKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIR 80 (241)
T ss_pred ccCHhhHHHHHHcCCcee-ehhhccc----cCCC--CCCHHHHHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHH
Confidence 356788899999999997 8863221 1333 456789999888899999887554 21 36778
Q ss_pred HHHHcCCCEEE----eCCC-CCchhHHHHHHh-cCCCCcE---EEecCCHHHHHH-HHHhCCCEEEEcCCCCCcchHHHH
Q 021609 109 ILEAIGIDYVD----ESEV-LTPADEENHINK-HNFRIPF---VCGCRNLGEALR-RIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 109 ~~~~aGad~Vi----~~~~-~~~~~~~~~i~~-~~~~i~~---~v~~~t~~ea~~-~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.+.++|+++|+ .++. +..+-+.+++.. .+.++.+ +=.+.++.++.. +.++|+.-|-++|... + +
T Consensus 81 ~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg~~--s---a- 154 (241)
T COG3142 81 LARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSGGKA--S---A- 154 (241)
T ss_pred HHHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCCcC--c---h-
Confidence 88999999995 2232 344444555544 2333221 112455655544 6788998777765321 1 0
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHH-HcCCCEEE
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMM-QLGCDGVF 250 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~ 250 (310)
....+.++++-+. .++-|+ +.||| +++++..+. .+|+.-+-
T Consensus 155 ----------------------------~eg~~~l~~li~~a~gri~Im--~GaGV-~~~N~~~l~~~tg~~e~H 198 (241)
T COG3142 155 ----------------------------LEGLDLLKRLIEQAKGRIIIM--AGAGV-RAENIAELVLLTGVTEVH 198 (241)
T ss_pred ----------------------------hhhHHHHHHHHHHhcCCEEEE--eCCCC-CHHHHHHHHHhcCchhhh
Confidence 0112233333222 233344 79999 699999985 67776555
No 233
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.67 E-value=0.0038 Score=62.38 Aligned_cols=40 Identities=33% Similarity=0.501 Sum_probs=33.7
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
++.++++++. .+++|+ .|+|.|++++..+.++|||+|.||
T Consensus 277 ~~~i~~ik~~~p~~~vi---~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 277 LEMIKYIKKTYPELDVI---GGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHhCCCCcEE---EecCCCHHHHHHHHHcCcCEEEEC
Confidence 5678888875 357775 489999999999999999999886
No 234
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.66 E-value=0.0012 Score=63.29 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=50.4
Q ss_pred CHHHHHHHHHhCCCEEEEcCCCC-CcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE
Q 021609 148 NLGEALRRIREGAAMIRTKGEAG-TGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH 226 (310)
Q Consensus 148 t~~ea~~~~~~Gad~V~v~g~~~-~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~ 226 (310)
..+.+..+.++|+|+|.+|+++- +.+ ......+..+.++.+..++||+
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h------------------------------~~~~~~~~~i~~~ik~~~ipVI- 191 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEH------------------------------VSKEGEPLNLKEFIYELDVPVI- 191 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhc------------------------------cCCcCCHHHHHHHHHHCCCCEE-
Confidence 34556667789999999998631 110 0011122223334333689997
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
+ |+|.|++++.+++++|||+|++|..
T Consensus 192 -a-G~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 192 -V-GGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred -E-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 4 8899999999999999999999943
No 235
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=97.64 E-value=8.8e-05 Score=70.42 Aligned_cols=49 Identities=33% Similarity=0.564 Sum_probs=40.9
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
......+++..++||+ +.|||.+++.+.++++.| ||.|.+|++++. ||.
T Consensus 280 ~~~a~~ik~~~~~pvi--~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la--dPd 329 (341)
T PF00724_consen 280 LDLAEAIKKAVKIPVI--GVGGIRTPEQAEKALEEGKADLVAMGRPLLA--DPD 329 (341)
T ss_dssp HHHHHHHHHHHSSEEE--EESSTTHHHHHHHHHHTTSTSEEEESHHHHH---TT
T ss_pred hhhhhhhhhhcCceEE--EEeeecchhhhHHHHhcCCceEeeccHHHHh--Cch
Confidence 4566777777789998 679999999999999876 999999999998 664
No 236
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.63 E-value=0.00094 Score=59.56 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=27.3
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
.+++|. ++|||+|.+|+.+++++||+-+-..+
T Consensus 178 ~~~~IK--asGGIrt~~~a~~~i~aGA~riGtS~ 209 (221)
T PRK00507 178 PRVGVK--ASGGIRTLEDALAMIEAGATRLGTSA 209 (221)
T ss_pred CCceEE--eeCCcCCHHHHHHHHHcCcceEccCc
Confidence 357887 89999999999999999999886543
No 237
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.61 E-value=0.00022 Score=68.00 Aligned_cols=36 Identities=33% Similarity=0.700 Sum_probs=27.9
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
++.++ ++||+.|+.|+.+++.+|||+|.+|++.|-+
T Consensus 274 ~V~Li--~sGgl~t~~dv~kalaLGAD~v~igt~~liA 309 (368)
T PF01645_consen 274 RVSLI--ASGGLRTGDDVAKALALGADAVYIGTAALIA 309 (368)
T ss_dssp CSEEE--EESS--SHHHHHHHHHCT-SEEE-SHHHHHH
T ss_pred ceEEE--EeCCccCHHHHHHHHhcCCCeeEecchhhhh
Confidence 46666 7999999999999999999999999988743
No 238
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.59 E-value=0.0074 Score=55.76 Aligned_cols=179 Identities=14% Similarity=0.178 Sum_probs=107.2
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.++.-|+++.+. ..+..+ . ......++...+..++||.+.+--+ .++.++.+.++|.
T Consensus 24 N~~n~e~~~avi~AAe~~~sPvIl~~~~~--~~~~~g-~--~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~Gf 98 (283)
T PRK07998 24 NTTNLETTISILNAIERSGLPNFIQIAPT--NAQLSG-Y--DYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGF 98 (283)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECcHh--HHhhCC-H--HHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCC
Confidence 3445543 445677788766665211 111111 1 0112355566677899999975433 4678889999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCCCCcE------E--E---------ecCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNFRIPF------V--C---------GCRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~~i~~------~--v---------~~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
+.|- .+. ++.+ ++.++.... ++.+ + . .-++++++.+-. +.|+|.+.+.-.
T Consensus 99 tSVM~DgS~-l~~eeNi~~T~~vve~Ah~~--gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiG 175 (283)
T PRK07998 99 TSVMIDGAA-LPFEENIAFTKEAVDFAKSY--GVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIG 175 (283)
T ss_pred CEEEEeCCC-CCHHHHHHHHHHHHHHHHHc--CCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhcc
Confidence 9993 333 3322 233333332 3221 1 0 024677777754 568888765421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
.--| .+ +...-+++.++++++..++|+++=.+.|+ +.+++.+++.+|+.-
T Consensus 176 t~HG-----------------~Y------------~~p~l~~~~l~~I~~~~~vPLVlHGgSG~-~~e~~~~ai~~Gi~K 225 (283)
T PRK07998 176 NVHG-----------------LE------------DIPRIDIPLLKRIAEVSPVPLVIHGGSGI-PPEILRSFVNYKVAK 225 (283)
T ss_pred cccc-----------------CC------------CCCCcCHHHHHHHHhhCCCCEEEeCCCCC-CHHHHHHHHHcCCcE
Confidence 1101 00 01123478899999888999885455565 458899999999999
Q ss_pred EEEcccccc
Q 021609 249 VFVGSGVFK 257 (310)
Q Consensus 249 V~VGsai~~ 257 (310)
|=++|.+..
T Consensus 226 iNi~Tel~~ 234 (283)
T PRK07998 226 VNIASDLRK 234 (283)
T ss_pred EEECHHHHH
Confidence 999998875
No 239
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.58 E-value=0.0006 Score=60.92 Aligned_cols=59 Identities=17% Similarity=0.387 Sum_probs=48.5
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
..++.++++.+.+++|++ ++|||++.+|+.+++.+||+.|++|++++. +|.. .+++.+.
T Consensus 61 ~~~~~i~~i~~~~~~pv~--~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~--~~~~-l~ei~~~ 119 (233)
T PRK00748 61 VNLELIEAIVKAVDIPVQ--VGGGIRSLETVEALLDAGVSRVIIGTAAVK--NPEL-VKEACKK 119 (233)
T ss_pred ccHHHHHHHHHHCCCCEE--EcCCcCCHHHHHHHHHcCCCEEEECchHHh--CHHH-HHHHHHH
Confidence 457788888887889998 689999999999999999999999999997 5532 3334443
No 240
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.57 E-value=0.029 Score=49.49 Aligned_cols=183 Identities=19% Similarity=0.172 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC--c-ceeeccccCcHHHHHHHHHcCCCE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT--I-PVMAKARIGHFVEAQILEAIGIDY 117 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~--i-Pv~vk~~~~~~~~a~~~~~aGad~ 117 (310)
+++++.|+.+.++|||++ +.+. ..|.+.-+++..+++.+.+. + +|.+-......+..+.+...|.|.
T Consensus 8 it~~eda~~~~~~GaD~iGfIf~---------~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~~~~~d~ 78 (207)
T PRK13958 8 FTTIKDVTAASQLPIDAIGFIHY---------EKSKRHQTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILSNTSINT 78 (207)
T ss_pred CCcHHHHHHHHHcCCCEEEEecC---------CCCcccCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhCCCCE
Confidence 688999999999999987 2221 12333445788888877553 2 233322212234446777899999
Q ss_pred EEeCCCCCchhHHHHHHhcCCCCcEEEecC-CHHHHHHHH--HhCCCEEEEcCC----CCCcchHHHHHHHHhhccceEe
Q 021609 118 VDESEVLTPADEENHINKHNFRIPFVCGCR-NLGEALRRI--REGAAMIRTKGE----AGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 118 Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~-t~~ea~~~~--~~Gad~V~v~g~----~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
|-.+...+ .+..+.++...+.+.++-..+ +......+. ...+|++-+... +++|
T Consensus 79 vQLHG~e~-~~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG------------------ 139 (207)
T PRK13958 79 IQLHGTES-IDFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTPSVSYGGTG------------------ 139 (207)
T ss_pred EEECCCCC-HHHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCCCCCCCcCC------------------
Confidence 95444333 444444543323333332221 112211111 223676655432 1222
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH--cCCCEEEEccccccC--CCHHHHHH
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ--LGCDGVFVGSGVFKS--GDPVKRAQ 266 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~--~GadgV~VGsai~~a--~dp~~~a~ 266 (310)
..-+|++++.+ .+.|++ .+||+ +|+++.+++. .+.+||=+.|.+=.. .|+.+ .+
T Consensus 140 ---------------~~~dw~~~~~~---~~~p~i--LAGGL-~peNV~~a~~~~~~p~gVDvsSGVE~~G~KD~~k-i~ 197 (207)
T PRK13958 140 ---------------QTYDWTILKHI---KDIPYL--IAGGI-NSENIQTVEQLKLSHQGYDIASGIETNGRKDINK-MT 197 (207)
T ss_pred ---------------cEeChHHhhhc---cCCCEE--EECCC-CHHHHHHHHhcCCCCCEEEcccccCCCCCCCHHH-HH
Confidence 12346666544 245887 47999 7999999874 588999999988642 36643 44
Q ss_pred HHHHHHhc
Q 021609 267 AIVRAVTH 274 (310)
Q Consensus 267 ~l~~~i~~ 274 (310)
+|++.+++
T Consensus 198 ~f~~~v~~ 205 (207)
T PRK13958 198 AIVNIVKG 205 (207)
T ss_pred HHHHHHHh
Confidence 57777654
No 241
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.55 E-value=0.00062 Score=58.20 Aligned_cols=94 Identities=21% Similarity=0.271 Sum_probs=64.6
Q ss_pred chhHHHHHHhcCCCC-cEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 126 PADEENHINKHNFRI-PFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i-~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+..+.+++..+.. .+.+++.+.+++..+.++|+|.|.+-... ++++
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~~--------------------------~~~~----- 114 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNMS--------------------------PEDL----- 114 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES-C--------------------------HHHH-----
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCcC--------------------------HHHH-----
Confidence 455566666654554 49999999999999999999999876431 1111
Q ss_pred ccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 205 KIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.++.. .++.+. ++||| +++++.++.++|+|.+.+|+..+.+
T Consensus 115 -----~~~v~~l~~~~~~v~ie--~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a 161 (169)
T PF01729_consen 115 -----KEAVEELRELNPRVKIE--ASGGI-TLENIAEYAKTGVDVISVGSLTHSA 161 (169)
T ss_dssp -----HHHHHHHHHHTTTSEEE--EESSS-STTTHHHHHHTT-SEEEECHHHHSB
T ss_pred -----HHHHHHHhhcCCcEEEE--EECCC-CHHHHHHHHhcCCCEEEcChhhcCC
Confidence 1223333222 234444 79999 7999999999999999999988764
No 242
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.54 E-value=0.0026 Score=58.77 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=76.8
Q ss_pred ccccCcHHHHHHHHHcCCCEEE---eCCCC--------------CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCC
Q 021609 98 KARIGHFVEAQILEAIGIDYVD---ESEVL--------------TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGA 160 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi---~~~~~--------------~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Ga 160 (310)
|...+.....+.+..+|-.... .++.. +..+..+.+++..+...+.+++.|.++++.+.++|+
T Consensus 131 KT~Pg~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~aga 210 (284)
T PRK06096 131 KAIPGTRLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRAQP 210 (284)
T ss_pred cCCCchhHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCC
Confidence 3444444555666677765553 22222 233445555544455669999999999999999999
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~ 239 (310)
|+|.+.+.. ++++ .+.++.+++ ..++.+- ++||| |++++.
T Consensus 211 DiI~LDn~~--------------------------~e~l----------~~av~~~~~~~~~~~le--aSGGI-~~~ni~ 251 (284)
T PRK06096 211 DVLQLDKFS--------------------------PQQA----------TEIAQIAPSLAPHCTLS--LAGGI-NLNTLK 251 (284)
T ss_pred CEEEECCCC--------------------------HHHH----------HHHHHHhhccCCCeEEE--EECCC-CHHHHH
Confidence 999876532 1111 112222221 1244444 89999 799999
Q ss_pred HHHHcCCCEEEEccccccC
Q 021609 240 MMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 240 ~~l~~GadgV~VGsai~~a 258 (310)
+...+|+|.+.+|.- +.+
T Consensus 252 ~yA~tGvD~Is~gal-~~a 269 (284)
T PRK06096 252 NYADCGIRLFITSAP-YYA 269 (284)
T ss_pred HHHhcCCCEEEECcc-ccC
Confidence 999999999987764 554
No 243
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.52 E-value=0.00078 Score=60.56 Aligned_cols=163 Identities=21% Similarity=0.253 Sum_probs=92.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh--cCcceeeccccC------c-----HHHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS--VTIPVMAKARIG------H-----FVEAQILEA 112 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~--~~iPv~vk~~~~------~-----~~~a~~~~~ 112 (310)
...+.+.+.|++++ .++|. + .....+.-.. ..++++++...+ . ...++.+.+
T Consensus 23 ~~~~~a~~~~~~av-~v~p~------~--------~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~ 87 (236)
T PF01791_consen 23 KLCREAIEYGFDAV-CVTPG------Y--------VKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIR 87 (236)
T ss_dssp HHHHHHHHHTSSEE-EEEGG------G--------HHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHH
T ss_pred HHHHHHHHhCCCEE-EECHH------H--------HHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHH
Confidence 45677788899987 33110 0 2223322222 245666654332 1 355788899
Q ss_pred cCCCEEE--eCC----CCC----chhHHHHHHh-cCCCCcEEEec-CCHHH------------HHH-HHHhCCCEEEEcC
Q 021609 113 IGIDYVD--ESE----VLT----PADEENHINK-HNFRIPFVCGC-RNLGE------------ALR-RIREGAAMIRTKG 167 (310)
Q Consensus 113 aGad~Vi--~~~----~~~----~~~~~~~i~~-~~~~i~~~v~~-~t~~e------------a~~-~~~~Gad~V~v~g 167 (310)
.|||.|. ..- .-. ..++....+. +..++++++.+ .+.++ +.+ +.++|+|+|++.-
T Consensus 88 ~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~t 167 (236)
T PF01791_consen 88 LGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTST 167 (236)
T ss_dssp TT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-
T ss_pred cCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecC
Confidence 9999994 111 111 2233333333 45667776662 22233 222 4678999999863
Q ss_pred CCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCC----EEEeCCCCC------CCHHH
Q 021609 168 EAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLP----VVHFAAGGV------ATPAD 237 (310)
Q Consensus 168 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iP----Vi~iA~GGI------~t~~d 237 (310)
....+.. ..+.+.++++.+...+| |. ++||| ++.++
T Consensus 168 g~~~~~t--------------------------------~~~~~~~~~~~~~~~~p~~~~Vk--~sGGi~~~~~~~~l~~ 213 (236)
T PF01791_consen 168 GKPVGAT--------------------------------PEDVELMRKAVEAAPVPGKVGVK--ASGGIDAEDFLRTLED 213 (236)
T ss_dssp SSSSCSH--------------------------------HHHHHHHHHHHHTHSSTTTSEEE--EESSSSHHHHHHSHHH
T ss_pred Ccccccc--------------------------------HHHHHHHHHHHHhcCCCcceEEE--EeCCCChHHHHHHHHH
Confidence 3111110 01133444444445678 87 68999 99999
Q ss_pred HHHHHHcCC--CEEEEcccccc
Q 021609 238 AAMMMQLGC--DGVFVGSGVFK 257 (310)
Q Consensus 238 ~~~~l~~Ga--dgV~VGsai~~ 257 (310)
+.+++++|| .|+..|+.|++
T Consensus 214 a~~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 214 ALEFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp HHHHHHTTHSEEEEEEHHHHHT
T ss_pred HHHHHHcCChhHHHHHHHHHHc
Confidence 999999999 99999999886
No 244
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.49 E-value=0.00099 Score=60.18 Aligned_cols=60 Identities=15% Similarity=0.306 Sum_probs=49.5
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
....++++++.+...+|+. ++|||+|.+|+.+++.+||+-+++||++++ ||... +++.+.
T Consensus 61 ~~n~~~i~~i~~~~~~pv~--vgGGirs~edv~~~l~~Ga~kvviGs~~l~--~p~l~-~~i~~~ 120 (241)
T PRK14024 61 GSNRELLAEVVGKLDVKVE--LSGGIRDDESLEAALATGCARVNIGTAALE--NPEWC-ARVIAE 120 (241)
T ss_pred CccHHHHHHHHHHcCCCEE--EcCCCCCHHHHHHHHHCCCCEEEECchHhC--CHHHH-HHHHHH
Confidence 3446788899887889998 689999999999999999999999999997 77543 334443
No 245
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.49 E-value=0.00096 Score=59.70 Aligned_cols=52 Identities=21% Similarity=0.475 Sum_probs=45.8
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
+.+.+.++++.+..++|++ ++|||++.+|+.+++..|++.|++|+++++ ||.
T Consensus 60 ~~n~~~~~~i~~~~~~pv~--~~ggi~~~~d~~~~~~~G~~~vilg~~~l~--~~~ 111 (232)
T TIGR03572 60 EPLFELISNLAEECFMPLT--VGGGIRSLEDAKKLLSLGADKVSINTAALE--NPD 111 (232)
T ss_pred CCCHHHHHHHHHhCCCCEE--EECCCCCHHHHHHHHHcCCCEEEEChhHhc--CHH
Confidence 4457788888887889998 689999999999999999999999999997 664
No 246
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.47 E-value=0.023 Score=56.00 Aligned_cols=181 Identities=18% Similarity=0.187 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcc-eeeccccCcHHHHHHHHHcCCCEEE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIP-VMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iP-v~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
+++++.|+.+.++|||++ +.+. ..|.+.-+++..+++.+.+.+. |.+-......+..+.+.+++.|.|-
T Consensus 264 it~~eda~~a~~~GaD~lGfIf~---------~~SpR~V~~~~a~~i~~~l~v~~VgVfv~~~~~~i~~i~~~~~lD~vQ 334 (454)
T PRK09427 264 LTRPQDAKAAYDAGAVYGGLIFV---------EKSPRYVSLEQAQEIIAAAPLRYVGVFRNADIEDIVDIAKQLSLAAVQ 334 (454)
T ss_pred CCCHHHHHHHHhCCCCEEeeEeC---------CCCCCCCCHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHcCCCEEE
Confidence 578899999999999987 2221 1122334577888887765421 2222111222344667889999985
Q ss_pred eCCCCCchhHHHHHHhc-CCCCcEE--EecCCHHHHHHHHHhCCCEEEEcCC-CCCcchHHHHHHHHhhccceEeecccC
Q 021609 120 ESEVLTPADEENHINKH-NFRIPFV--CGCRNLGEALRRIREGAAMIRTKGE-AGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 120 ~~~~~~~~~~~~~i~~~-~~~i~~~--v~~~t~~ea~~~~~~Gad~V~v~g~-~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
.+...++..+ +.++.. ..++.++ +.+.+..+. ....++|++-+... +++|.
T Consensus 335 LHG~e~~~~~-~~l~~~~~~~~~iikai~v~~~~~~--~~~~~~d~~LlDs~~GGtG~---------------------- 389 (454)
T PRK09427 335 LHGDEDQAYI-DALREALPKTCQIWKAISVGDTLPA--RDLQHVDRYLLDNGQGGTGQ---------------------- 389 (454)
T ss_pred eCCCCCHHHH-HHHHhhcCCCCeEEEEeecCchhhh--hhhcCCCEEEEcCCCCCCCC----------------------
Confidence 4444444433 344432 2222222 223222221 11235777665531 22331
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC---CCHHHHHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS---GDPVKRAQAIVRAV 272 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a---~dp~~~a~~l~~~i 272 (310)
.-+|.++... .+.|++ .+||+ +|+|+.+++..+.+||=|.|.+=.+ .|+. ..++|++.+
T Consensus 390 -----------~~DW~~l~~~---~~~p~i--LAGGL-~peNV~~ai~~~P~gVDVsSGVE~~pG~KD~~-Ki~~Fi~~v 451 (454)
T PRK09427 390 -----------TFDWSLLPGQ---SLDNVL--LAGGL-NPDNCQQAAQLGCAGLDFNSGVESAPGIKDAQ-KLASVFQTL 451 (454)
T ss_pred -----------ccChHHhhhc---ccCCEE--EECCC-CHHHHHHHHhcCCCEEEeCCcccCCCCCcCHH-HHHHHHHHH
Confidence 2235444321 256888 47999 7999999999999999999999754 4765 444577776
Q ss_pred hc
Q 021609 273 TH 274 (310)
Q Consensus 273 ~~ 274 (310)
+.
T Consensus 452 r~ 453 (454)
T PRK09427 452 RA 453 (454)
T ss_pred hh
Confidence 54
No 247
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.47 E-value=0.0096 Score=54.61 Aligned_cols=179 Identities=19% Similarity=0.184 Sum_probs=99.6
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc--CCccc--ccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc------HHHHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE--RVPAD--IRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH------FVEAQ 108 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~--~~~~~--~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~------~~~a~ 108 (310)
+..+-|+-.|+.++++|++++ .+. +.... ....+-..+......+++|.+.+++||++..-.|+ -..++
T Consensus 22 ~pg~~d~~sA~la~~aGF~al-~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~ 100 (289)
T COG2513 22 LPGAWDAGSALLAERAGFKAL-YLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVR 100 (289)
T ss_pred ecCCcCHHHHHHHHHcCCeEE-EeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHH
Confidence 334456678999999999998 332 00000 00001111122345777788889999999743332 35678
Q ss_pred HHHHcCCCEEEeCC--------------CCCchhHHHHHHh---cCCCCcEEEecCCH-------H----HHHHHHHhCC
Q 021609 109 ILEAIGIDYVDESE--------------VLTPADEENHINK---HNFRIPFVCGCRNL-------G----EALRRIREGA 160 (310)
Q Consensus 109 ~~~~aGad~Vi~~~--------------~~~~~~~~~~i~~---~~~~i~~~v~~~t~-------~----ea~~~~~~Ga 160 (310)
.++++|+.++.+-| ..+..+....++. ...+..+++-.+|- + .++...++|+
T Consensus 101 ~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGA 180 (289)
T COG2513 101 ELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGA 180 (289)
T ss_pred HHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCC
Confidence 89999999994211 1233444444433 11222333322221 2 2333346677
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE-eCCCCCCCHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH-FAAGGVATPADAA 239 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~-iA~GGI~t~~d~~ 239 (310)
|.|...+. .+.+.+..+++.+++|+.+ +-.+|-.-.-++.
T Consensus 181 D~if~~al---------------------------------------~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~ 221 (289)
T COG2513 181 DAIFPEAL---------------------------------------TDLEEIRAFAEAVPVPLPANITEFGKTPLLTVA 221 (289)
T ss_pred cEEccccC---------------------------------------CCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHH
Confidence 77765431 1244566666666645443 2345543335566
Q ss_pred HHHHcCCCEEEEcccccc
Q 021609 240 MMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 240 ~~l~~GadgV~VGsai~~ 257 (310)
++-++|..-|..|...++
T Consensus 222 ~L~~~Gv~~V~~~~~~~r 239 (289)
T COG2513 222 ELAELGVKRVSYGLTAFR 239 (289)
T ss_pred HHHhcCceEEEECcHHHH
Confidence 667899999999988886
No 248
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=97.46 E-value=0.0033 Score=58.63 Aligned_cols=111 Identities=20% Similarity=0.120 Sum_probs=76.3
Q ss_pred HHHHHHHHcCCcEE-Eecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC-
Q 021609 46 EQARVAEEAGACAV-MALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~- 122 (310)
++++.+.+.|+++| +.++ |++.. + ...+.++++++.+++|+++|.. ...++++.+.++|+|+|..+.
T Consensus 133 ~~i~~~~~~g~~~i~l~~~~p~~~~-~--------~~~~~i~~l~~~~~~pvivK~v-~s~~~a~~a~~~G~d~I~v~~~ 202 (299)
T cd02809 133 DLLRRAEAAGYKALVLTVDTPVLGR-R--------LTWDDLAWLRSQWKGPLILKGI-LTPEDALRAVDAGADGIVVSNH 202 (299)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCC-C--------CCHHHHHHHHHhcCCCEEEeec-CCHHHHHHHHHCCCCEEEEcCC
Confidence 46677788999987 3333 33211 1 2368999999999999999965 335789999999999996321
Q ss_pred -------CCCchhHHHHHHh-cCCCCcEEEe--cCCHHHHHHHHHhCCCEEEEc
Q 021609 123 -------VLTPADEENHINK-HNFRIPFVCG--CRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 123 -------~~~~~~~~~~i~~-~~~~i~~~v~--~~t~~ea~~~~~~Gad~V~v~ 166 (310)
.....+....+.+ ...+++++++ +++..++.++..+|||.|.+.
T Consensus 203 gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 203 GGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 1122233333333 2224666664 899999999999999999875
No 249
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.43 E-value=0.005 Score=54.23 Aligned_cols=103 Identities=18% Similarity=0.252 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCCEEEeC-CCCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHH
Q 021609 104 FVEAQILEAIGIDYVDES-EVLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV 181 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~~-~~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~ 181 (310)
.+.++.+.+.|++.+-.+ ......+.++.++++.+++.++++ +.|.++++.+.++|++++. .+ ..
T Consensus 23 ~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-sP-~~----------- 89 (204)
T TIGR01182 23 LPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-SP-GL----------- 89 (204)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE-CC-CC-----------
Confidence 355788899999999533 333445556666655557888876 8899999999999999984 22 11
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
+.+.++..++ .++|++ =|+.|+.++..++++||+.|=+
T Consensus 90 ---------------------------~~~v~~~~~~-~~i~~i----PG~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 90 ---------------------------TPELAKHAQD-HGIPII----PGVATPSEIMLALELGITALKL 127 (204)
T ss_pred ---------------------------CHHHHHHHHH-cCCcEE----CCCCCHHHHHHHHHCCCCEEEE
Confidence 1223333333 578887 3888999999999999998853
No 250
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.41 E-value=0.0016 Score=57.66 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=25.4
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
++||. ++|||+|.+++.+++++|++-+-.
T Consensus 175 ~v~IK--aaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 175 TIGVK--ASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred CCeEE--EeCCCCCHHHHHHHHHHhhHHhCc
Confidence 58888 799999999999999999987643
No 251
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.41 E-value=0.00049 Score=61.70 Aligned_cols=50 Identities=24% Similarity=0.356 Sum_probs=44.8
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
+.+++++++.+..++|+. ++|||++.+|+.+++.+|+++|++|++.+ ||.
T Consensus 60 ~n~~~i~~i~~~~~~pv~--~gGGIrs~edv~~l~~~G~~~vivGtaa~---~~~ 109 (228)
T PRK04128 60 KNLDVVKNIIRETGLKVQ--VGGGLRTYESIKDAYEIGVENVIIGTKAF---DLE 109 (228)
T ss_pred chHHHHHHHHhhCCCCEE--EcCCCCCHHHHHHHHHCCCCEEEECchhc---CHH
Confidence 457888898887889998 79999999999999999999999999998 464
No 252
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=97.39 E-value=0.01 Score=52.75 Aligned_cols=43 Identities=23% Similarity=0.446 Sum_probs=34.9
Q ss_pred CCCEEEeCCCCCCCHH----------HHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 021609 221 RLPVVHFAAGGVATPA----------DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQA 267 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~----------d~~~~l~~GadgV~VGsai~~a~dp~~~a~~ 267 (310)
+.+++ ..||+ +. +..+++..|++.+++||+|++++||...+++
T Consensus 163 ~~~~l---tPGI~-~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~~~~~ 215 (216)
T cd04725 163 DFLIL---TPGIG-AQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEA 215 (216)
T ss_pred CCeEE---cCCcC-CCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHHHHhc
Confidence 45543 68986 44 6777789999999999999999999887764
No 253
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.36 E-value=0.0097 Score=52.79 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=81.8
Q ss_pred HHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEeCC-CCCchhHHHHHHh-cC--CCCcEEEe-cCCHHHHHHHH
Q 021609 83 LIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDESE-VLTPADEENHINK-HN--FRIPFVCG-CRNLGEALRRI 156 (310)
Q Consensus 83 ~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~~~-~~~~~~~~~~i~~-~~--~~i~~~v~-~~t~~ea~~~~ 156 (310)
.++.+.+.-=+||+...... ....++.+.+.|+..+-.+. .....+.++.+++ ++ +++.++++ +.|.++++++.
T Consensus 6 ~~~~l~~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~ 85 (213)
T PRK06552 6 ILTKLKANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAI 85 (213)
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHH
Confidence 34555544345555433222 13556888899999995333 2334455555554 32 35778776 78999999999
Q ss_pred HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHH
Q 021609 157 REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPA 236 (310)
Q Consensus 157 ~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~ 236 (310)
++|++|+.. + .. ..+.++..+ ..++|++ =|+.|++
T Consensus 86 ~aGA~Fivs-P-~~--------------------------------------~~~v~~~~~-~~~i~~i----PG~~T~~ 120 (213)
T PRK06552 86 LAGAQFIVS-P-SF--------------------------------------NRETAKICN-LYQIPYL----PGCMTVT 120 (213)
T ss_pred HcCCCEEEC-C-CC--------------------------------------CHHHHHHHH-HcCCCEE----CCcCCHH
Confidence 999999862 1 11 122333333 3578987 4888999
Q ss_pred HHHHHHHcCCCEEEE
Q 021609 237 DAAMMMQLGCDGVFV 251 (310)
Q Consensus 237 d~~~~l~~GadgV~V 251 (310)
++.++++.|+|.+-+
T Consensus 121 E~~~A~~~Gad~vkl 135 (213)
T PRK06552 121 EIVTALEAGSEIVKL 135 (213)
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999997
No 254
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.35 E-value=0.0014 Score=58.96 Aligned_cols=60 Identities=22% Similarity=0.429 Sum_probs=48.4
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
...+.++++++..++|++ .+|||++.+|+..++.+|||.|++|+..++ +|.. .+++.+.+
T Consensus 63 ~~~~~i~~i~~~~~~~l~--v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~--~~~~-~~~i~~~~ 122 (241)
T PRK13585 63 KNAEAIEKIIEAVGVPVQ--LGGGIRSAEDAASLLDLGVDRVILGTAAVE--NPEI-VRELSEEF 122 (241)
T ss_pred ccHHHHHHHHHHcCCcEE--EcCCcCCHHHHHHHHHcCCCEEEEChHHhh--ChHH-HHHHHHHh
Confidence 446778888887789998 589999999999999999999999999986 6643 33344443
No 255
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.35 E-value=0.0027 Score=60.87 Aligned_cols=73 Identities=23% Similarity=0.273 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeC
Q 021609 149 LGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFA 228 (310)
Q Consensus 149 ~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA 228 (310)
.+-+..+.++|+|+|.+|++.-... | .....++..+.++.+..++||+ +
T Consensus 145 ~e~a~~l~eAGad~I~ihgrt~~q~----------------------------~-~sg~~~p~~l~~~i~~~~IPVI--~ 193 (369)
T TIGR01304 145 REIAPIVVKAGADLLVIQGTLVSAE----------------------------H-VSTSGEPLNLKEFIGELDVPVI--A 193 (369)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhh----------------------------c-cCCCCCHHHHHHHHHHCCCCEE--E
Confidence 3555667799999999998641100 0 0011234445555555789998 3
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 229 AGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 229 ~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
|+|.|.+++.+++++|||+|++|+
T Consensus 194 -G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 194 -GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred -eCCCCHHHHHHHHHcCCCEEEECC
Confidence 899999999999999999999885
No 256
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.35 E-value=0.0018 Score=59.05 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=49.9
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
++.+++++++.+..++|+. ++|||++.+|+.+++..|+++|++|+++++ +|. ..+++.+.+
T Consensus 60 ~~n~~~i~~i~~~~~~pv~--~gGGi~s~~d~~~l~~~G~~~vvigs~~~~--~~~-~~~~~~~~~ 120 (258)
T PRK01033 60 EPNYELIENLASECFMPLC--YGGGIKTLEQAKKIFSLGVEKVSINTAALE--DPD-LITEAAERF 120 (258)
T ss_pred cccHHHHHHHHHhCCCCEE--ECCCCCCHHHHHHHHHCCCCEEEEChHHhc--CHH-HHHHHHHHh
Confidence 4568889999887889998 799999999999999999999999999996 664 333344443
No 257
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.32 E-value=0.01 Score=53.00 Aligned_cols=126 Identities=16% Similarity=0.132 Sum_probs=81.7
Q ss_pred HHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEeCCC-CCchhHHHHH----HhcCCCCcEEEe-cCCHHHHH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDESEV-LTPADEENHI----NKHNFRIPFVCG-CRNLGEAL 153 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~~~~-~~~~~~~~~i----~~~~~~i~~~v~-~~t~~ea~ 153 (310)
.+.++.+.+.-=+||+...... -.+.++.+.+.|...+-.+.. ....+.++.+ .+..+++.++++ +.|.++++
T Consensus 6 ~~~~~~l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~ 85 (222)
T PRK07114 6 IAVLTAMKATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAA 85 (222)
T ss_pred HHHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHH
Confidence 4555666654446666544322 135567889999999953332 2223333333 233456778776 78999999
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCC
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVA 233 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~ 233 (310)
.+.++|++|+..=+. +.++++..++ .++|++ =|+.
T Consensus 86 ~a~~aGA~FiVsP~~----------------------------------------~~~v~~~~~~-~~i~~i----PG~~ 120 (222)
T PRK07114 86 LYIQLGANFIVTPLF----------------------------------------NPDIAKVCNR-RKVPYS----PGCG 120 (222)
T ss_pred HHHHcCCCEEECCCC----------------------------------------CHHHHHHHHH-cCCCEe----CCCC
Confidence 999999999863111 1223333333 578887 5888
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 021609 234 TPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 234 t~~d~~~~l~~GadgV~V 251 (310)
|+.++.+++++|++.|=+
T Consensus 121 TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 121 SLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999998854
No 258
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.32 E-value=0.011 Score=52.51 Aligned_cols=124 Identities=20% Similarity=0.280 Sum_probs=82.6
Q ss_pred HHHHHHhhcCcceeeccccCc-HHHHHHHHHcCCCEEEeCCC-CCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhC
Q 021609 83 LIKEIKQSVTIPVMAKARIGH-FVEAQILEAIGIDYVDESEV-LTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREG 159 (310)
Q Consensus 83 ~i~~i~~~~~iPv~vk~~~~~-~~~a~~~~~aGad~Vi~~~~-~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~G 159 (310)
.++.+.+.-=+||+....... ...++.+.+.|++.+-.+.. ....+.++.+++..+++.++++ +.+.++++.+.++|
T Consensus 8 ~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aG 87 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAG 87 (212)
T ss_pred HHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcC
Confidence 344555444466664443221 35568888899999953322 2334455555554567878876 78889999999999
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHH
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~ 239 (310)
++++..-+. +.+.++...+ ..+|++ =|+.|+.++.
T Consensus 88 A~FivsP~~----------------------------------------~~~vi~~a~~-~~i~~i----PG~~TptEi~ 122 (212)
T PRK05718 88 AQFIVSPGL----------------------------------------TPPLLKAAQE-GPIPLI----PGVSTPSELM 122 (212)
T ss_pred CCEEECCCC----------------------------------------CHHHHHHHHH-cCCCEe----CCCCCHHHHH
Confidence 999975321 0123333333 567886 4888999999
Q ss_pred HHHHcCCCEEEE
Q 021609 240 MMMQLGCDGVFV 251 (310)
Q Consensus 240 ~~l~~GadgV~V 251 (310)
+++++|++.|-+
T Consensus 123 ~a~~~Ga~~vKl 134 (212)
T PRK05718 123 LGMELGLRTFKF 134 (212)
T ss_pred HHHHCCCCEEEE
Confidence 999999999987
No 259
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.30 E-value=0.0022 Score=59.09 Aligned_cols=94 Identities=17% Similarity=0.280 Sum_probs=65.6
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
..+..+.++...+...+.+.+.+.+++..+.++|+|+|.+.+.. ++++
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~~leea~~a~~agaDiI~LDn~~--------------------------~e~l------ 216 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVESLEDALKAAKAGADIIMLDNMT--------------------------PEEI------ 216 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcCcCEEEECCCC--------------------------HHHH------
Confidence 33445555555556779999999999999999999999876431 1111
Q ss_pred cCCcHHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.+..+++. .++.+. ++||| +++++.+..++|+|.+.+|+....+
T Consensus 217 ----~~~v~~l~~~~~~~~~~le--aSGGI-~~~ni~~yA~tGvD~Is~galt~sa 265 (278)
T PRK08385 217 ----REVIEALKREGLRERVKIE--VSGGI-TPENIEEYAKLDVDVISLGALTHSV 265 (278)
T ss_pred ----HHHHHHHHhcCcCCCEEEE--EECCC-CHHHHHHHHHcCCCEEEeChhhcCC
Confidence 1122223221 234444 89999 7999999999999999999877643
No 260
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.29 E-value=0.0076 Score=52.93 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCEEEeCC-CCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHH
Q 021609 105 VEAQILEAIGIDYVDESE-VLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVR 182 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~-~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r 182 (310)
+.++.+.+.|...+-.+. .....+.++.++++.+++.++++ +.|.++++++.++|++++.. + ..
T Consensus 20 ~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS-P-~~------------ 85 (201)
T PRK06015 20 PLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS-P-GT------------ 85 (201)
T ss_pred HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC-C-CC------------
Confidence 556888999999995333 33344555666554567888876 78999999999999999863 1 11
Q ss_pred hhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
+.+.++..++ .++|++ =|+.||.++..++++|++.|=+
T Consensus 86 --------------------------~~~vi~~a~~-~~i~~i----PG~~TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 86 --------------------------TQELLAAAND-SDVPLL----PGAATPSEVMALREEGYTVLKF 123 (201)
T ss_pred --------------------------CHHHHHHHHH-cCCCEe----CCCCCHHHHHHHHHCCCCEEEE
Confidence 1223433333 578887 5888999999999999998853
No 261
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.29 E-value=0.0025 Score=58.97 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=65.6
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
..+.++.+++..+...+.+.+.|.+|+..+.++|+|+|.+-+.. ++++
T Consensus 186 i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~gaDiI~LDnm~--------------------------~e~v------ 233 (289)
T PRK07896 186 VVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAEGAELVLLDNFP--------------------------VWQT------ 233 (289)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHcCCCEEEeCCCC--------------------------HHHH------
Confidence 34455555554455779999999999999999999999876431 1111
Q ss_pred cCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.++.. .++.+. ++||| |++++.+..++|+|.+.+|+....+
T Consensus 234 ----k~av~~~~~~~~~v~ie--aSGGI-~~~ni~~yA~tGvD~Is~galt~sa 280 (289)
T PRK07896 234 ----QEAVQRRDARAPTVLLE--SSGGL-TLDTAAAYAETGVDYLAVGALTHSV 280 (289)
T ss_pred ----HHHHHHHhccCCCEEEE--EECCC-CHHHHHHHHhcCCCEEEeChhhcCC
Confidence 1122222221 234444 89999 7999999999999999999877653
No 262
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=97.28 E-value=0.046 Score=50.82 Aligned_cols=174 Identities=16% Similarity=0.217 Sum_probs=97.9
Q ss_pred ccCCCHHHHHHHHHcCCcEEEecc---------CCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc--Cc----H
Q 021609 40 MDVVTPEQARVAEEAGACAVMALE---------RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI--GH----F 104 (310)
Q Consensus 40 ~~~~~~~~A~~~~~~Ga~~i~~L~---------~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~--~~----~ 104 (310)
..+-|.--|+.++++|++++ .+. ..| |. +-..+....+.+++|.+.+++||++..-. +. .
T Consensus 22 p~~~Da~SAri~e~~Gf~ai-~~Sg~~~a~~~lG~P-D~---g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~ 96 (292)
T PRK11320 22 VGTINAYHALLAERAGFKAI-YLSGGGVAAASLGLP-DL---GITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIA 96 (292)
T ss_pred cCCCCHHHHHHHHHcCCCEE-EeCHHHHHhHhcCCC-CC---CCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHH
Confidence 34456677899999999987 221 111 10 00011112356666777889999996322 22 3
Q ss_pred HHHHHHHHcCCCEEEeCCC--------------CCchhHHHHHHh-----cCCCCcEEEecC-----CHHHH----HHHH
Q 021609 105 VEAQILEAIGIDYVDESEV--------------LTPADEENHINK-----HNFRIPFVCGCR-----NLGEA----LRRI 156 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~--------------~~~~~~~~~i~~-----~~~~i~~~v~~~-----t~~ea----~~~~ 156 (310)
..++.+.++||-++.+-|. .+..+....++. .+.++.+++-+. ..+|+ ++..
T Consensus 97 r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~ 176 (292)
T PRK11320 97 RTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYV 176 (292)
T ss_pred HHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHH
Confidence 5578899999999953221 233344433332 122333333221 13333 3334
Q ss_pred HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE-eCCCCCCCH
Q 021609 157 REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH-FAAGGVATP 235 (310)
Q Consensus 157 ~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~-iA~GGI~t~ 235 (310)
++|||.|.+.+.. +.+.++++.+..+.|+++ ...+|-.-.
T Consensus 177 eAGAD~ifi~~~~---------------------------------------~~~~i~~~~~~~~~Pl~~n~~~~~~~p~ 217 (292)
T PRK11320 177 EAGADMIFPEAMT---------------------------------------ELEMYRRFADAVKVPILANITEFGATPL 217 (292)
T ss_pred HcCCCEEEecCCC---------------------------------------CHHHHHHHHHhcCCCEEEEeccCCCCCC
Confidence 6788888776421 234455565556678843 134553211
Q ss_pred HHHHHHHHcCCCEEEEcccccc
Q 021609 236 ADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 236 ~d~~~~l~~GadgV~VGsai~~ 257 (310)
-++.++.++|+.-|..|...++
T Consensus 218 ~s~~~L~~lGv~~v~~~~~~~~ 239 (292)
T PRK11320 218 FTTEELASAGVAMVLYPLSAFR 239 (292)
T ss_pred CCHHHHHHcCCcEEEEChHHHH
Confidence 3566667899999999988876
No 263
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.0035 Score=56.60 Aligned_cols=47 Identities=28% Similarity=0.469 Sum_probs=36.7
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 220 GRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
.++||+ ..|+|+ ++++.+++ +.++||++||++-++++|+....+.+.
T Consensus 201 ~~v~Il--YGGSV~-~~N~~e~~~~~~idG~LVGgAslka~~f~~ii~~~~ 248 (251)
T COG0149 201 EKVRIL--YGGSVK-PGNAAELAAQPDIDGALVGGASLKADDFLAILEALA 248 (251)
T ss_pred CCeEEE--EeCCcC-hhHHHHHhcCCCCCeEEEcceeecchhHHHHHHHHh
Confidence 368888 579995 55555555 789999999999999989877666543
No 264
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.28 E-value=0.0025 Score=55.97 Aligned_cols=28 Identities=43% Similarity=0.662 Sum_probs=24.6
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
.++||. ++|||+|.+++.+++.+|++-+
T Consensus 173 ~~v~ik--~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 173 GRVGVK--AAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred CCceEE--EeCCCCCHHHHHHHHHhChhhc
Confidence 468888 7899999999999999999855
No 265
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.27 E-value=0.00024 Score=63.41 Aligned_cols=46 Identities=26% Similarity=0.609 Sum_probs=37.5
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.+..+..+...++|++ -+|||+|.+++.++.++|||.|++|++|.+
T Consensus 171 ~~v~~~~~~~~~~~Li--vGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 171 EEVIAAVKKLSDIPLI--VGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp HHHHHHHHHSSSSEEE--EESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred HHHHHHHHhcCCccEE--EeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 4455555666789998 589999999999999999999999999997
No 266
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.26 E-value=0.048 Score=49.33 Aligned_cols=178 Identities=20% Similarity=0.207 Sum_probs=100.7
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccC--Ccc--cccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc------HHHHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALER--VPA--DIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH------FVEAQ 108 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~--~~~--~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~------~~~a~ 108 (310)
+..+-|+-.|+.++++|++++ .+.. ... .....+...+......++.|.+.+++|+++....++ ...++
T Consensus 13 ~~~~~D~~sA~~~e~~G~~ai-~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~ 91 (243)
T cd00377 13 LPGAWDALSARLAERAGFKAI-YTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVR 91 (243)
T ss_pred ecCCCCHHHHHHHHHcCCCEE-EeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHH
Confidence 334456678999999999987 2210 000 000000000111235666677788999999755432 23467
Q ss_pred HHHHcCCCEEEeCC--------------CCCchhHHHHHHh-----cC-CCCcEEEe-----c--CCHHHHH----HHHH
Q 021609 109 ILEAIGIDYVDESE--------------VLTPADEENHINK-----HN-FRIPFVCG-----C--RNLGEAL----RRIR 157 (310)
Q Consensus 109 ~~~~aGad~Vi~~~--------------~~~~~~~~~~i~~-----~~-~~i~~~v~-----~--~t~~ea~----~~~~ 157 (310)
.+.++|+++|.+-+ .++.++..+.++. .+ .++.+++- . ...+++. ...+
T Consensus 92 ~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~ 171 (243)
T cd00377 92 ELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAE 171 (243)
T ss_pred HHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHH
Confidence 77889999995311 1244444443332 12 24555544 2 3344433 3456
Q ss_pred hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHH
Q 021609 158 EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD 237 (310)
Q Consensus 158 ~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d 237 (310)
+|+|.+.+.+.. +.+.++.+.+..+.|+++....+-. .-+
T Consensus 172 AGAD~v~v~~~~---------------------------------------~~~~~~~~~~~~~~Pl~~~~~~~~~-~~~ 211 (243)
T cd00377 172 AGADGIFVEGLK---------------------------------------DPEEIRAFAEAPDVPLNVNMTPGGN-LLT 211 (243)
T ss_pred cCCCEEEeCCCC---------------------------------------CHHHHHHHHhcCCCCEEEEecCCCC-CCC
Confidence 788888876431 2345666666678898875333321 123
Q ss_pred HHHHHHcCCCEEEEcccccc
Q 021609 238 AAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 238 ~~~~l~~GadgV~VGsai~~ 257 (310)
..++.++|+.-+..|..+++
T Consensus 212 ~~~l~~lG~~~v~~~~~~~~ 231 (243)
T cd00377 212 VAELAELGVRRVSYGLALLR 231 (243)
T ss_pred HHHHHHCCCeEEEEChHHHH
Confidence 44456789999999988875
No 267
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=97.26 E-value=0.0034 Score=61.01 Aligned_cols=136 Identities=21% Similarity=0.325 Sum_probs=86.2
Q ss_pred cCCcEEEecc-CCcc--cccccCCCCCCCCHHHHHHHHhh----c-CcceeeccccCcHHHHHHHHHcCCCEEEeCCCCC
Q 021609 54 AGACAVMALE-RVPA--DIRSQGGVARMSDPQLIKEIKQS----V-TIPVMAKARIGHFVEAQILEAIGIDYVDESEVLT 125 (310)
Q Consensus 54 ~Ga~~i~~L~-~~~~--~~~~~~G~~~~~~~~~i~~i~~~----~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~ 125 (310)
.-+|. ++|| .+|- ..+..+|++++..+..+.++-+. . .+|+.+|.+.+..+.. . -
T Consensus 345 ~~VDF-IDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~--------~--------~ 407 (614)
T KOG2333|consen 345 CDVDF-IDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGH--------P--------V 407 (614)
T ss_pred cceee-eeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCc--------h--------h
Confidence 44554 5898 4544 44777899988877666655332 2 5799999998742210 0 0
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHH-HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRI-REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~-~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+++. +.. +-|++.|++||+.-+. . |
T Consensus 408 a~~Li~----------------------~i~newg~savTlHGRSRqQ-------------------R---------Y-- 435 (614)
T KOG2333|consen 408 AHELIP----------------------RIVNEWGASAVTLHGRSRQQ-------------------R---------Y-- 435 (614)
T ss_pred HHHHHH----------------------HHhhccCcceEEecCchhhh-------------------h---------h--
Confidence 111111 122 4578899999974211 0 1
Q ss_pred ccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHH-HcC-CCEEEEccccccCCCHH
Q 021609 205 KIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMM-QLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l-~~G-adgV~VGsai~~a~dp~ 262 (310)
.-.++|+.+.++.+.. .+|++ .+|.|.|.+|-.+-+ ..+ .|+|||++.-+- .||
T Consensus 436 TK~AnWdYi~e~a~~ak~~l~li--GNGDi~S~eDw~~~~~~~p~v~svMIaRGALI--KPW 493 (614)
T KOG2333|consen 436 TKSANWDYIEECADKAKSALPLI--GNGDILSWEDWYERLNQNPNVDSVMIARGALI--KPW 493 (614)
T ss_pred hcccChHHHHHHHHhcccCceeE--ecCccccHHHHHHHhhcCCCcceEEeeccccc--cch
Confidence 1245688888876543 38888 899999999966655 444 899999986654 477
No 268
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.25 E-value=0.0041 Score=57.55 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=66.2
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
..+..+.+++..+...+-+.+.|.+++..+.++|+|+|.+.+.. ++++
T Consensus 192 i~~av~~~r~~~~~~kIeVEvetleea~eA~~aGaDiImLDnms--------------------------pe~l------ 239 (294)
T PRK06978 192 VGAALDAAFALNAGVPVQIEVETLAQLETALAHGAQSVLLDNFT--------------------------LDMM------ 239 (294)
T ss_pred HHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHcCCCEEEECCCC--------------------------HHHH------
Confidence 45566666654445678899999999999999999999876531 1111
Q ss_pred cCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.+.++.++. ++.+- ++||| |++++.+..++|+|.+.+|+....++
T Consensus 240 ----~~av~~~~~--~~~lE--aSGGI-t~~ni~~yA~tGVD~IS~galthsa~ 284 (294)
T PRK06978 240 ----REAVRVTAG--RAVLE--VSGGV-NFDTVRAFAETGVDRISIGALTKDVR 284 (294)
T ss_pred ----HHHHHhhcC--CeEEE--EECCC-CHHHHHHHHhcCCCEEEeCccccCCc
Confidence 112222222 33444 89999 79999999999999999998777643
No 269
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.24 E-value=0.0052 Score=53.79 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=74.9
Q ss_pred HHhhcCcceeeccccCc-HHHHHHHHHcCCCEEEeC-CCCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEE
Q 021609 87 IKQSVTIPVMAKARIGH-FVEAQILEAIGIDYVDES-EVLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMI 163 (310)
Q Consensus 87 i~~~~~iPv~vk~~~~~-~~~a~~~~~aGad~Vi~~-~~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V 163 (310)
+++.-=+||+....... .+.++.+.+.|...+-.+ ......+.++.++++.+++.++++ +.|.++++++.++|++++
T Consensus 5 l~~~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fi 84 (196)
T PF01081_consen 5 LKENKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFI 84 (196)
T ss_dssp HHHHSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEE
T ss_pred HhhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEE
Confidence 33333356654433222 356788999999998433 333445666666665578888886 789999999999999998
Q ss_pred EEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH
Q 021609 164 RTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ 243 (310)
Q Consensus 164 ~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~ 243 (310)
..=+ . +.+.++..++ .++|++ =|+.|+.++.++++
T Consensus 85 vSP~--~--------------------------------------~~~v~~~~~~-~~i~~i----PG~~TptEi~~A~~ 119 (196)
T PF01081_consen 85 VSPG--F--------------------------------------DPEVIEYARE-YGIPYI----PGVMTPTEIMQALE 119 (196)
T ss_dssp EESS------------------------------------------HHHHHHHHH-HTSEEE----EEESSHHHHHHHHH
T ss_pred ECCC--C--------------------------------------CHHHHHHHHH-cCCccc----CCcCCHHHHHHHHH
Confidence 6421 1 1223333333 468887 47889999999999
Q ss_pred cCCCEEE
Q 021609 244 LGCDGVF 250 (310)
Q Consensus 244 ~GadgV~ 250 (310)
+||+.|=
T Consensus 120 ~G~~~vK 126 (196)
T PF01081_consen 120 AGADIVK 126 (196)
T ss_dssp TT-SEEE
T ss_pred CCCCEEE
Confidence 9999985
No 270
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.24 E-value=0.0027 Score=56.69 Aligned_cols=60 Identities=18% Similarity=0.439 Sum_probs=48.5
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.+++.++++.+..++|+. ..|||++.+|+.+++.+|||.|++|+.+++ ||.. ..++.+.+
T Consensus 59 ~~~~~i~~i~~~~~~pi~--~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~--d~~~-~~~~~~~~ 118 (230)
T TIGR00007 59 VNLPVIKKIVRETGVPVQ--VGGGIRSLEDVEKLLDLGVDRVIIGTAAVE--NPDL-VKELLKEY 118 (230)
T ss_pred CcHHHHHHHHHhcCCCEE--EeCCcCCHHHHHHHHHcCCCEEEEChHHhh--CHHH-HHHHHHHh
Confidence 357788888887889998 589999999999999999999999999997 6643 23344444
No 271
>PLN02411 12-oxophytodienoate reductase
Probab=97.24 E-value=0.0043 Score=60.07 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=43.9
Q ss_pred HHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 211 ~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.+.+.+++..++||+ +.||| +++++.++++.| ||.|.+|++++. ||. |.+.+++..
T Consensus 303 ~~a~~ik~~v~~pvi--~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia--dPd-----l~~k~~~g~ 359 (391)
T PLN02411 303 QLMRTLRRAYQGTFM--CSGGF-TRELGMQAVQQGDADLVSYGRLFIS--NPD-----LVLRFKLNA 359 (391)
T ss_pred HHHHHHHHHcCCCEE--EECCC-CHHHHHHHHHcCCCCEEEECHHHHh--Ccc-----HHHHHhcCC
Confidence 355677887889998 67999 689999999888 999999999998 665 444444443
No 272
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=97.24 E-value=0.0086 Score=53.01 Aligned_cols=112 Identities=21% Similarity=0.353 Sum_probs=62.2
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc-eEeecccChhH----------HHHhhh---cc-----CCcHHHHH
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD-IRVLRNMDDDE----------VFTFAK---KI-----AAPYDLVM 214 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~-~~~l~~~~~d~----------~~~~~~---~~-----~~~~~~i~ 214 (310)
...+.|+|++.+|+..+...+..+++..++.-.. +-+...++++. ++..++ .. ....+.+.
T Consensus 71 ~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v~~~~~~~ 150 (213)
T TIGR01740 71 SKIKQGADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPVCSAEEAK 150 (213)
T ss_pred HHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhhhCcCHHHHHHHHHHHhhhcCCeEEEeCHHHHH
Confidence 3567899999999865543344455544432211 22222222211 111111 11 11123355
Q ss_pred HHhhcCC-CCEEEeCCCCCCCHH--H--------HHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 215 QTKQLGR-LPVVHFAAGGVATPA--D--------AAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 215 ~i~~~~~-iPVi~iA~GGI~t~~--d--------~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
.+++..+ .++ ...||+-.. . +..+.+.|+|.+++||+|++++||...++++
T Consensus 151 ~ir~~~~~~~~---vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~~~~~~~~ 212 (213)
T TIGR01740 151 EIRKFTGDFLI---LTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEAAKRI 212 (213)
T ss_pred HHHHhcCCceE---EeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHh
Confidence 5555432 233 368886321 2 2677889999999999999999998877654
No 273
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=97.24 E-value=0.003 Score=59.90 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=36.2
Q ss_pred HHHHHHhhcCCCCEEEeCCCCCCCHHHHH----HHHHcCC--CEEEEccccccCCCH
Q 021609 211 DLVMQTKQLGRLPVVHFAAGGVATPADAA----MMMQLGC--DGVFVGSGVFKSGDP 261 (310)
Q Consensus 211 ~~i~~i~~~~~iPVi~iA~GGI~t~~d~~----~~l~~Ga--dgV~VGsai~~a~dp 261 (310)
+..+++.+...+|+++ ++||+ +.+++. .++++|+ .||++||++.+...+
T Consensus 231 ~~f~~~~~a~~~P~vv-lsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v~ 285 (340)
T PRK12858 231 KLFREQSDATDLPFIF-LSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQDGIE 285 (340)
T ss_pred HHHHHHHhhCCCCEEE-ECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhhhc
Confidence 3455566667899986 69998 555544 4557899 999999999986544
No 274
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.20 E-value=0.0047 Score=57.29 Aligned_cols=91 Identities=19% Similarity=0.185 Sum_probs=63.8
Q ss_pred hhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc
Q 021609 127 ADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI 206 (310)
Q Consensus 127 ~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~ 206 (310)
.+.++.++...+...+.+.+.|.+++..+.++|+|+|-+-+.. ++++
T Consensus 196 ~~av~~~r~~~~~~kIeVEv~sleea~ea~~~gaDiI~LDn~s--------------------------~e~~------- 242 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEVEVENLDELDQALKAGADIIMLDNFT--------------------------TEQM------- 242 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcCCCEEEeCCCC--------------------------hHHH-------
Confidence 3444444444456779999999999999999999999876431 1111
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.++. ++.+. ++||| +++++.+..++|+|.+.+|+....+
T Consensus 243 ---~~av~~~~~--~~~ie--aSGGI-~~~ni~~yA~tGVD~Is~galthsa 286 (296)
T PRK09016 243 ---REAVKRTNG--RALLE--VSGNV-TLETLREFAETGVDFISVGALTKHV 286 (296)
T ss_pred ---HHHHHhhcC--CeEEE--EECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 112222222 34444 89999 7999999999999999999865543
No 275
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=97.20 E-value=0.026 Score=52.30 Aligned_cols=176 Identities=19% Similarity=0.238 Sum_probs=96.5
Q ss_pred cCCCHHHHHHHHHcCCcEEEecc--CCcccccccC-CC-CCCCCHHHHHHHHhhcCcceeecccc--Cc----HHHHHHH
Q 021609 41 DVVTPEQARVAEEAGACAVMALE--RVPADIRSQG-GV-ARMSDPQLIKEIKQSVTIPVMAKARI--GH----FVEAQIL 110 (310)
Q Consensus 41 ~~~~~~~A~~~~~~Ga~~i~~L~--~~~~~~~~~~-G~-~~~~~~~~i~~i~~~~~iPv~vk~~~--~~----~~~a~~~ 110 (310)
.+-|.--|+.++++|++++ .+. .........- |. .+....+.+++|.+.+++||++..-. +. ...++.+
T Consensus 19 ~~~Da~SAri~e~aGf~Ai-~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~ 97 (285)
T TIGR02317 19 GAINAMAALLAERAGFEAI-YLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREM 97 (285)
T ss_pred CCCCHHHHHHHHHcCCCEE-EEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHH
Confidence 4456677889999999987 221 0000000000 10 01112345666677889999996332 22 3457899
Q ss_pred HHcCCCEEEeCCC--------------CCchhHHHHHHh---c--CCCCcEEEecC-----CHHHH----HHHHHhCCCE
Q 021609 111 EAIGIDYVDESEV--------------LTPADEENHINK---H--NFRIPFVCGCR-----NLGEA----LRRIREGAAM 162 (310)
Q Consensus 111 ~~aGad~Vi~~~~--------------~~~~~~~~~i~~---~--~~~i~~~v~~~-----t~~ea----~~~~~~Gad~ 162 (310)
.++|+.++.+-|. .+..+....++. . +.++.+++-+. ..+|+ +...++|+|.
T Consensus 98 ~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~ 177 (285)
T TIGR02317 98 EDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADM 177 (285)
T ss_pred HHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCE
Confidence 9999999953221 233344433332 1 12222222211 13333 2234668888
Q ss_pred EEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE-eCCCCCCCH-HHHHH
Q 021609 163 IRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH-FAAGGVATP-ADAAM 240 (310)
Q Consensus 163 V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~-iA~GGI~t~-~d~~~ 240 (310)
|.+.+.. +.+.++++.+..+.|+++ +..+|- ++ -++.+
T Consensus 178 vfi~g~~---------------------------------------~~e~i~~~~~~i~~Pl~~n~~~~~~-~p~~s~~e 217 (285)
T TIGR02317 178 IFPEALT---------------------------------------SLEEFRQFAKAVKVPLLANMTEFGK-TPLFTADE 217 (285)
T ss_pred EEeCCCC---------------------------------------CHHHHHHHHHhcCCCEEEEeccCCC-CCCCCHHH
Confidence 8775421 133455565555678742 134553 33 35777
Q ss_pred HHHcCCCEEEEcccccc
Q 021609 241 MMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 241 ~l~~GadgV~VGsai~~ 257 (310)
+.++|+.-|..|..++.
T Consensus 218 L~~lGv~~v~~~~~~~~ 234 (285)
T TIGR02317 218 LREAGYKMVIYPVTAFR 234 (285)
T ss_pred HHHcCCcEEEEchHHHH
Confidence 78899999999998886
No 276
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.17 E-value=0.0023 Score=56.72 Aligned_cols=51 Identities=27% Similarity=0.467 Sum_probs=45.7
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
..+++++++.+...+|+- ..|||++.+|+.+++.+|||-|.+.|+-++ ||.
T Consensus 61 ~~~~vv~r~A~~vfiPlt--VGGGI~s~eD~~~ll~aGADKVSINsaAv~--~p~ 111 (256)
T COG0107 61 TMLDVVERVAEQVFIPLT--VGGGIRSVEDARKLLRAGADKVSINSAAVK--DPE 111 (256)
T ss_pred hHHHHHHHHHhhceeeeE--ecCCcCCHHHHHHHHHcCCCeeeeChhHhc--ChH
Confidence 347788888888899998 589999999999999999999999999997 775
No 277
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.0027 Score=56.23 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=25.1
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
++.|= |+|||+|.+|+..++++|++-+-..+
T Consensus 183 ~vgvK--aSGGIrt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 183 RVGVK--ASGGIRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred Cceee--ccCCcCCHHHHHHHHHHhHHHhcccc
Confidence 46676 89999999999999999976665443
No 278
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.16 E-value=0.0053 Score=56.75 Aligned_cols=92 Identities=13% Similarity=0.058 Sum_probs=64.2
Q ss_pred chhHHHHHHhcCC-CCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 126 PADEENHINKHNF-RIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~i~~~~~-~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+..+.+++..+ ...+.+.+.|.+++..+.++|+|+|-+-+.. ++++
T Consensus 183 i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~agaDiImLDnms--------------------------pe~l----- 231 (290)
T PRK06559 183 VQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGADIIMLDNMS--------------------------LEQI----- 231 (290)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcCCCEEEECCCC--------------------------HHHH-----
Confidence 3444555554333 5779999999999999999999999876431 1111
Q ss_pred ccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 205 KIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.+++ ++.+. ++||| +++++.+...+|+|.+.+|+....+
T Consensus 232 -----~~av~~~~~--~~~le--aSGGI-~~~ni~~yA~tGVD~Is~galthsa 275 (290)
T PRK06559 232 -----EQAITLIAG--RSRIE--CSGNI-DMTTISRFRGLAIDYVSSGSLTHSA 275 (290)
T ss_pred -----HHHHHHhcC--ceEEE--EECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 112222222 34444 89999 7999999999999999999866543
No 279
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.15 E-value=0.011 Score=51.04 Aligned_cols=110 Identities=21% Similarity=0.249 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC--
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE-- 122 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~-- 122 (310)
.+.+..+.++|++.+ .|+.. ...|. ....+.++++++.+ .+++... ...+++..+.++|+|.|-.+.
T Consensus 54 ~~ev~~l~~aGadII-AlDaT-~R~Rp------~~l~~li~~i~~~~-~l~MADi--st~ee~~~A~~~G~D~I~TTLsG 122 (192)
T PF04131_consen 54 LKEVDALAEAGADII-ALDAT-DRPRP------ETLEELIREIKEKY-QLVMADI--STLEEAINAAELGFDIIGTTLSG 122 (192)
T ss_dssp HHHHHHHHHCT-SEE-EEE-S-SSS-S------S-HHHHHHHHHHCT-SEEEEE---SSHHHHHHHHHTT-SEEE-TTTT
T ss_pred HHHHHHHHHcCCCEE-EEecC-CCCCC------cCHHHHHHHHHHhC-cEEeeec--CCHHHHHHHHHcCCCEEEccccc
Confidence 478999999999965 66411 01111 12257888999887 5555544 356899999999999994221
Q ss_pred ----CC-C--chhHHHHHHhcCCCCcEEEe--cCCHHHHHHHHHhCCCEEEEcC
Q 021609 123 ----VL-T--PADEENHINKHNFRIPFVCG--CRNLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 123 ----~~-~--~~~~~~~i~~~~~~i~~~v~--~~t~~ea~~~~~~Gad~V~v~g 167 (310)
.. . .-++.+.+.. .+++++++ .++++++.++.++|++.|.+.+
T Consensus 123 YT~~t~~~~pD~~lv~~l~~--~~~pvIaEGri~tpe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 123 YTPYTKGDGPDFELVRELVQ--ADVPVIAEGRIHTPEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp SSTTSTTSSHHHHHHHHHHH--TTSEEEEESS--SHHHHHHHHHTT-SEEEE-H
T ss_pred CCCCCCCCCCCHHHHHHHHh--CCCcEeecCCCCCHHHHHHHHhcCCeEEEECc
Confidence 11 1 2244444443 36778776 8999999999999999998864
No 280
>PLN02363 phosphoribosylanthranilate isomerase
Probab=97.13 E-value=0.16 Score=46.40 Aligned_cols=182 Identities=21% Similarity=0.224 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC---c-ceeeccccCcHHHHHHHHHcCCC
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT---I-PVMAKARIGHFVEAQILEAIGID 116 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~---i-Pv~vk~~~~~~~~a~~~~~aGad 116 (310)
+++++.|+.+.++|||.+ +.+. ..|.+.-+++..+++.+.+. + +|.+-......+..+.+.+.|.|
T Consensus 54 it~~eda~~a~~~GaD~iGfIf~---------~~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld 124 (256)
T PLN02363 54 ITSARDAAMAVEAGADFIGMILW---------PKSKRSISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLE 124 (256)
T ss_pred CCcHHHHHHHHHcCCCEEEEecC---------CCCCCcCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCC
Confidence 688999999999999987 2221 12223345778888876542 1 23332221223445677889999
Q ss_pred EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHH-HHHHH---hCCCEEEEcCC-CCCcchHHHHHHHHhhccceEee
Q 021609 117 YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEA-LRRIR---EGAAMIRTKGE-AGTGNIIEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea-~~~~~---~Gad~V~v~g~-~~~~~~~~~~~~~r~~~~~~~~l 191 (310)
.|-.+...++. ..+.++. ...+.-.+.+.+..+. ..... ..+|++-+... +++|.
T Consensus 125 ~VQLHG~e~~~-~~~~l~~-~~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~~GGtG~------------------ 184 (256)
T PLN02363 125 LVQLHGNGSRA-AFSRLVR-ERKVIYVLNANEDGKLLNVVPEEDCHLADWILVDSATGGSGK------------------ 184 (256)
T ss_pred EEEECCCCCHH-HHHHhhc-CCcEEEEEEECchHHHHHHHHhhccccCCEEEEeCCCCCCCC------------------
Confidence 99544443333 3333332 1233333333332221 11211 23676655533 22331
Q ss_pred cccChhHHHHhhhccCCcHHHHH--HHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccC----CCHHHH
Q 021609 192 RNMDDDEVFTFAKKIAAPYDLVM--QTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS----GDPVKR 264 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~~~~~~~i~--~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a----~dp~~~ 264 (310)
.-+|..+. .+. ...|++ .+||| +++++.+++. .+..||=|.|.+=.+ .|+. .
T Consensus 185 ---------------t~DW~~l~~~~~~--~~~p~i--LAGGL-~peNV~~ai~~~~P~GVDVsSGVE~~pG~~KD~~-K 243 (256)
T PLN02363 185 ---------------GFNWQNFKLPSVR--SRNGWL--LAGGL-TPENVHEAVSLLKPTGVDVSSGICGPDGIRKDPS-K 243 (256)
T ss_pred ---------------ccCHHHhcccccc--cCCCEE--EECCC-CHHHHHHHHHhcCCcEEEeCCcccCCCCcccCHH-H
Confidence 12243332 111 245887 47999 7999999985 799999999999753 4654 3
Q ss_pred HHHHHHHHh
Q 021609 265 AQAIVRAVT 273 (310)
Q Consensus 265 a~~l~~~i~ 273 (310)
.++|++.++
T Consensus 244 I~~fv~~vr 252 (256)
T PLN02363 244 ISSFISAVK 252 (256)
T ss_pred HHHHHHHHH
Confidence 344666664
No 281
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.03 E-value=0.1 Score=46.20 Aligned_cols=177 Identities=17% Similarity=0.173 Sum_probs=102.1
Q ss_pred cccCCCHHHHHHHHHcCC-cEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc----HHHHHHHHHc
Q 021609 39 IMDVVTPEQARVAEEAGA-CAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH----FVEAQILEAI 113 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga-~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~----~~~a~~~~~a 113 (310)
+.|-.|.+..+.+.+.|. +++ --||. ..+..+ . ....+.++++++...-||.+..+..+ .+.++.+.+.
T Consensus 3 ~lDsa~~~ei~~~~~~~~i~Gv-TTNPs--ll~k~~-~--~~~~~~~~~i~~~~~~~v~~qv~~~~~e~~i~~a~~l~~~ 76 (211)
T cd00956 3 FLDTADLEEIKKASETGLLDGV-TTNPS--LIAKSG-R--IDFEAVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLASL 76 (211)
T ss_pred EecCCCHHHHHHHHhcCCcCcc-ccCHH--HHHhcC-C--cCHHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHHHHHh
Confidence 345566777787877665 444 33432 222212 1 12246777777776777776554322 3556666665
Q ss_pred CCCEEE-eCCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcC-CCCCcchHHHHHHHHhhccceEe
Q 021609 114 GIDYVD-ESEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKG-EAGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 114 Gad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g-~~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
+-..++ ++....-.+..+.+++. ++.+.+ .+.|.+.+..+.++|++||...- +.
T Consensus 77 ~~~~~iKIP~T~~gl~ai~~L~~~--gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~--------------------- 133 (211)
T cd00956 77 GGNVVVKIPVTEDGLKAIKKLSEE--GIKTNVTAIFSAAQALLAAKAGATYVSPFVGRI--------------------- 133 (211)
T ss_pred CCCEEEEEcCcHhHHHHHHHHHHc--CCceeeEEecCHHHHHHHHHcCCCEEEEecChH---------------------
Confidence 334444 44333333444555443 555444 48899999999999999987652 21
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhh---cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~---~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
... ...+.+.++++.+ ..+.|.-+ ...|++++.++.+++.+|||.|-+.-.+++
T Consensus 134 -~~~-----------g~dg~~~i~~i~~~~~~~~~~tki-l~As~r~~~ei~~a~~~Gad~vTv~~~vl~ 190 (211)
T cd00956 134 -DDL-----------GGDGMELIREIRTIFDNYGFDTKI-LAASIRNPQHVIEAALAGADAITLPPDVLE 190 (211)
T ss_pred -hhc-----------CCCHHHHHHHHHHHHHHcCCCceE-EecccCCHHHHHHHHHcCCCEEEeCHHHHH
Confidence 000 1122333333322 23344221 247999999999999999999988755543
No 282
>PRK02227 hypothetical protein; Provisional
Probab=97.03 E-value=0.2 Score=45.03 Aligned_cols=186 Identities=21% Similarity=0.183 Sum_probs=105.6
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC--cceeec--cccC-c---HHHHHH
Q 021609 38 VIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT--IPVMAK--ARIG-H---FVEAQI 109 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~--iPv~vk--~~~~-~---~~~a~~ 109 (310)
+..++.+.+.|+.+.++|+|.| ++ ++.. .|+--...+..+++|++.+. .|++.. +... . ...+..
T Consensus 3 lLvSvr~~eEA~~Al~~GaDiI-Dv----K~P~--~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~ 75 (238)
T PRK02227 3 LLVSVRNLEEALEALAGGADII-DV----KNPK--EGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALG 75 (238)
T ss_pred eeeccCCHHHHHHHHhcCCCEE-Ec----cCCC--CCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHH
Confidence 4567889999999999999965 87 2222 23322345789999988764 788774 3221 1 122344
Q ss_pred HHHcCCCEE-EeCCCC-CchhHHH-------HHHhcCCCCcEE-E---ecC-----CHHH-HHHHHHhCCCEEEEcCCCC
Q 021609 110 LEAIGIDYV-DESEVL-TPADEEN-------HINKHNFRIPFV-C---GCR-----NLGE-ALRRIREGAAMIRTKGEAG 170 (310)
Q Consensus 110 ~~~aGad~V-i~~~~~-~~~~~~~-------~i~~~~~~i~~~-v---~~~-----t~~e-a~~~~~~Gad~V~v~g~~~ 170 (310)
+..+|+|+| ++-... ...+..+ .++.+..+..++ + +-. +..+ ...+.++|++.+.+.....
T Consensus 76 ~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~K 155 (238)
T PRK02227 76 AAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIK 155 (238)
T ss_pred HHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccC
Confidence 555899999 532221 2222222 222222332222 1 211 2333 3345678999888765544
Q ss_pred CcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 171 TGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 171 ~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
.+. +.+..++.+++ .+++++.++. .+-.- ..|-+ ..+|+..+..+++|.+-
T Consensus 156 dg~---------------~Lfd~l~~~~L----------~~Fv~~ar~~-Gl~~g--LAGSL-~~~dip~L~~l~pD~lG 206 (238)
T PRK02227 156 DGK---------------SLFDHMDEEEL----------AEFVAEARSH-GLMSA--LAGSL-KFEDIPALKRLGPDILG 206 (238)
T ss_pred CCc---------------chHhhCCHHHH----------HHHHHHHHHc-ccHhH--hcccC-chhhHHHHHhcCCCEEE
Confidence 332 12222222221 2345545543 22222 25777 59999999999999999
Q ss_pred EccccccCC
Q 021609 251 VGSGVFKSG 259 (310)
Q Consensus 251 VGsai~~a~ 259 (310)
+=+++....
T Consensus 207 fRgavC~g~ 215 (238)
T PRK02227 207 VRGAVCGGG 215 (238)
T ss_pred echhccCCC
Confidence 999999655
No 283
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=97.02 E-value=0.019 Score=54.67 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=61.9
Q ss_pred CHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC--C------CCchh----HHHHHHhcCCCCcEEEe--
Q 021609 80 DPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE--V------LTPAD----EENHINKHNFRIPFVCG-- 145 (310)
Q Consensus 80 ~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~--~------~~~~~----~~~~i~~~~~~i~~~v~-- 145 (310)
..+.++.+++.+++|+++|.. ...++++.+.++|+|+|+.+. . .++.+ +.......+..++++++
T Consensus 201 ~~~~i~~l~~~~~~PvivKgv-~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GG 279 (344)
T cd02922 201 TWDDIKWLRKHTKLPIVLKGV-QTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGG 279 (344)
T ss_pred CHHHHHHHHHhcCCcEEEEcC-CCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 457899999999999999965 557889999999999996221 1 12222 22222122224666665
Q ss_pred cCCHHHHHHHHHhCCCEEEEc
Q 021609 146 CRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 146 ~~t~~ea~~~~~~Gad~V~v~ 166 (310)
+.+..++.++..+|++.|.+.
T Consensus 280 Ir~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 280 VRRGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred CCCHHHHHHHHHcCCCEEEEC
Confidence 899999999999999999875
No 284
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.00 E-value=0.037 Score=55.17 Aligned_cols=40 Identities=35% Similarity=0.473 Sum_probs=33.0
Q ss_pred HHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 210 YDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 210 ~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
.+.++++++.. ++||+ + |+|.|.+++..+.++|||+|.+|
T Consensus 257 l~~i~~i~~~~p~~~vi--~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 257 LDRVREIKAKYPDVQII--A-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHHHHhhCCCCCEE--E-eccCCHHHHHHHHHcCCCEEEEC
Confidence 55677777654 78987 2 88889999999999999999886
No 285
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=96.97 E-value=0.036 Score=50.00 Aligned_cols=172 Identities=23% Similarity=0.271 Sum_probs=96.2
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc--------CCcccccccCCCCCCCCHHHHHHHHhhcCcceeecc--ccCc-----
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE--------RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKA--RIGH----- 103 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~--------~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~--~~~~----- 103 (310)
+..+-|.--|+.++++|++++ .+. ..| |. +.-.+......+++|.+.+++||++.. .++.
T Consensus 13 ~p~~~D~~SAr~~e~~Gf~ai-~~sg~~~a~s~G~p-D~---~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v 87 (238)
T PF13714_consen 13 LPNVWDALSARLAERAGFDAI-ATSGAGVAASLGYP-DG---GLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENV 87 (238)
T ss_dssp EEEESSHHHHHHHHHTT-SEE-EEHHHHHHHHTTS--SS---S-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHH
T ss_pred eCCCcCHHHHHHHHHcCCCEE-EechHHHHHHcCCC-CC---CCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHH
Confidence 334556678999999999987 221 111 00 100011123466667788899999963 3232
Q ss_pred HHHHHHHHHcCCCEEEeCCC---------CCchhHHHHHHh-----cCCCCcEEEecCC-------HHH----HHHHHHh
Q 021609 104 FVEAQILEAIGIDYVDESEV---------LTPADEENHINK-----HNFRIPFVCGCRN-------LGE----ALRRIRE 158 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~~~~---------~~~~~~~~~i~~-----~~~~i~~~v~~~t-------~~e----a~~~~~~ 158 (310)
...++.+.++|+.++.+-|. .++++....++. ...++.+++-+.. .+| ++...++
T Consensus 88 ~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eA 167 (238)
T PF13714_consen 88 ARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEA 167 (238)
T ss_dssp HHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHc
Confidence 46678999999999952221 234444444433 2345444443322 122 2333568
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHH
Q 021609 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADA 238 (310)
Q Consensus 159 Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~ 238 (310)
|+|.|.+.+.. +.+.++++.+..+.|+.+...++- -++
T Consensus 168 GAD~ifi~~~~---------------------------------------~~~~i~~~~~~~~~Pl~v~~~~~~---~~~ 205 (238)
T PF13714_consen 168 GADMIFIPGLQ---------------------------------------SEEEIERIVKAVDGPLNVNPGPGT---LSA 205 (238)
T ss_dssp T-SEEEETTSS---------------------------------------SHHHHHHHHHHHSSEEEEETTSSS---S-H
T ss_pred CCCEEEeCCCC---------------------------------------CHHHHHHHHHhcCCCEEEEcCCCC---CCH
Confidence 99998876531 122244454444689887543332 556
Q ss_pred HHHHHcCCCEEEEcccccc
Q 021609 239 AMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 239 ~~~l~~GadgV~VGsai~~ 257 (310)
.++.++|+.-|..|..+++
T Consensus 206 ~eL~~lGv~~v~~~~~~~~ 224 (238)
T PF13714_consen 206 EELAELGVKRVSYGNSLLR 224 (238)
T ss_dssp HHHHHTTESEEEETSHHHH
T ss_pred HHHHHCCCcEEEEcHHHHH
Confidence 6668899999999998885
No 286
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.92 E-value=0.011 Score=54.57 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=64.1
Q ss_pred hhHHHHHHhcCC-CCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 127 ADEENHINKHNF-RIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 127 ~~~~~~i~~~~~-~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
.+.++.++++.+ ...+.+.+.|.+++..+.++|+|+|.+-+.. ++++
T Consensus 181 ~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~gaDiI~LDn~s--------------------------~e~l------ 228 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVEVDTLDQLEEALELGVDAVLLDNMT--------------------------PDTL------ 228 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHcCCCEEEeCCCC--------------------------HHHH------
Confidence 344455554333 4779999999999999999999999876431 1111
Q ss_pred cCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.+. .+.|+- ++||| +++++.+..++|+|.+.+|+....+
T Consensus 229 ----~~av~~~~--~~~~le--aSGGI-~~~ni~~yA~tGVD~Is~Galthsa 272 (281)
T PRK06106 229 ----REAVAIVA--GRAITE--ASGRI-TPETAPAIAASGVDLISVGWLTHSA 272 (281)
T ss_pred ----HHHHHHhC--CCceEE--EECCC-CHHHHHHHHhcCCCEEEeChhhcCC
Confidence 11222222 245665 89999 7999999999999999999866543
No 287
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.92 E-value=0.012 Score=54.31 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=63.2
Q ss_pred hhHHHHHHhcCC-CCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 127 ADEENHINKHNF-RIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 127 ~~~~~~i~~~~~-~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
.+..+.+++..+ ...+.+++.|.+++..+.++|+|+|.+-+.. ++++
T Consensus 180 ~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~gaDiImLDn~s--------------------------~e~l------ 227 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAAGVDTIMLDNFS--------------------------LDDL------ 227 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhcCCCEEEECCCC--------------------------HHHH------
Confidence 344444444333 4779999999999999999999999876431 1111
Q ss_pred cCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.+..+++ +..+. ++||| |++++.+...+|+|.+.+|+....+
T Consensus 228 ----~~av~~~~~--~~~le--aSGgI-~~~ni~~yA~tGVD~Is~galths~ 271 (281)
T PRK06543 228 ----REGVELVDG--RAIVE--ASGNV-NLNTVGAIASTGVDVISVGALTHSV 271 (281)
T ss_pred ----HHHHHHhCC--CeEEE--EECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 112222332 23344 89999 7999999999999999999866653
No 288
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.91 E-value=0.0029 Score=56.98 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=45.6
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
...++++++.+.+.+|+. ..|||+|.+|+.+++.+||+-|++||..++ ||.
T Consensus 63 ~n~~~I~~i~~~~~~pi~--vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~--~~~ 113 (234)
T PRK13587 63 REFDYIKSLRRLTTKDIE--VGGGIRTKSQIMDYFAAGINYCIVGTKGIQ--DTD 113 (234)
T ss_pred chHHHHHHHHhhcCCeEE--EcCCcCCHHHHHHHHHCCCCEEEECchHhc--CHH
Confidence 457788899887889998 689999999999999999999999999997 775
No 289
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.90 E-value=0.038 Score=49.90 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=52.0
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc-CC-cccccccCC--CCCCCCHHHHHHHHhhcC-cceeeccccCc-------HHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE-RV-PADIRSQGG--VARMSDPQLIKEIKQSVT-IPVMAKARIGH-------FVE 106 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~-~~-~~~~~~~~G--~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~-------~~~ 106 (310)
+..+-|+-.|+.++++|++++ .+. .. ........+ ..+......++.+++.+. .||++..-.++ ...
T Consensus 16 ~~~ayD~~sA~i~e~aG~dai-~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~ 94 (240)
T cd06556 16 TLTAYDYSMAKQFADAGLNVM-LVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFEL 94 (240)
T ss_pred EecCCCHHHHHHHHHcCCCEE-EEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHH
Confidence 444557788999999999987 221 00 000000000 001112345666677764 79999754442 233
Q ss_pred HHHHHHcCCCEEEeCCCCCchhHHHHHH
Q 021609 107 AQILEAIGIDYVDESEVLTPADEENHIN 134 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~~~~~~~~~~~i~ 134 (310)
++.+.++||++|.+-+..+..+.++.+.
T Consensus 95 ~~~l~~aGa~gv~iED~~~~~~~i~ai~ 122 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGEWHIETLQMLT 122 (240)
T ss_pred HHHHHHcCCcEEEEcCcHHHHHHHHHHH
Confidence 6778889999996544433333334443
No 290
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.025 Score=49.71 Aligned_cols=123 Identities=19% Similarity=0.240 Sum_probs=83.1
Q ss_pred HHHHHHhhcCcceeeccccCc-HHHHHHHHHcCCCEEEeCC-CCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhC
Q 021609 83 LIKEIKQSVTIPVMAKARIGH-FVEAQILEAIGIDYVDESE-VLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREG 159 (310)
Q Consensus 83 ~i~~i~~~~~iPv~vk~~~~~-~~~a~~~~~aGad~Vi~~~-~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~G 159 (310)
....+++.-=+||+..+.... ...++.+.+.|.+.+-++. .....+.++.+.+..++..++++ +-|.+++..+.++|
T Consensus 6 ~~~~l~~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aG 85 (211)
T COG0800 6 ILSKLKAQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAG 85 (211)
T ss_pred HHHHHHHCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcC
Confidence 344444444567775554332 3557889999999995443 33456677777665557777776 77889999999999
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHH
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~ 239 (310)
++++.. + .. +.+.++ .+...++|++ =|+.|+..+.
T Consensus 86 a~fiVs-P-~~--------------------------------------~~ev~~-~a~~~~ip~~----PG~~TptEi~ 120 (211)
T COG0800 86 AQFIVS-P-GL--------------------------------------NPEVAK-AANRYGIPYI----PGVATPTEIM 120 (211)
T ss_pred CCEEEC-C-CC--------------------------------------CHHHHH-HHHhCCCccc----CCCCCHHHHH
Confidence 999853 1 11 122333 3333578886 5889999999
Q ss_pred HHHHcCCCEEE
Q 021609 240 MMMQLGCDGVF 250 (310)
Q Consensus 240 ~~l~~GadgV~ 250 (310)
.++++|++.+=
T Consensus 121 ~Ale~G~~~lK 131 (211)
T COG0800 121 AALELGASALK 131 (211)
T ss_pred HHHHcChhhee
Confidence 99999998763
No 291
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.88 E-value=0.21 Score=46.33 Aligned_cols=193 Identities=12% Similarity=0.097 Sum_probs=115.0
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.+...|+++.+. ..+..+ . ......++.+.+..++||.+.+--+ .++.+..+.++|.
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIlq~s~~--~~~~~~-~--~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GF 98 (286)
T PRK12738 24 NIHNAETIQAILEVCSEMRSPVILAGTPG--TFKHIA-L--EEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGV 98 (286)
T ss_pred EeCCHHHHHHHHHHHHHHCCCEEEEcCcc--hhhhCC-H--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 4455654 445577788766665311 111111 1 1113455566677899999975433 5788899999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCCCC----cEE---------Ee----cCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNFRI----PFV---------CG----CRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~~i----~~~---------v~----~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
+-|- .+. ++.+ ++.++....+..+ -.+ -+ -++++++.+-. +.|+|.+.+.-.
T Consensus 99 tSVM~DgS~-lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiG 177 (286)
T PRK12738 99 RSAMIDGSH-FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIG 177 (286)
T ss_pred CeEeecCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccC
Confidence 9993 333 3322 3344443322110 000 00 34677787765 468888776421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+ -| ..++ ....-+++.++++++.+++|+++=.+.|+. .+++.++.+.|..=
T Consensus 178 t--~H---------------G~Y~-----------~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~-~e~~~kai~~GI~K 228 (286)
T PRK12738 178 T--AH---------------GLYS-----------KTPKIDFQRLAEIREVVDVPLVLHGASDVP-DEFVRRTIELGVTK 228 (286)
T ss_pred c--cc---------------CCCC-----------CCCcCCHHHHHHHHHHhCCCEEEeCCCCCC-HHHHHHHHHcCCeE
Confidence 1 11 0010 012335889999999889998865677874 79999999999999
Q ss_pred EEEccccccCCCHHHHHHHHHHHHh
Q 021609 249 VFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 249 V~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
|=++|.+.. ...+.+.+.+.
T Consensus 229 iNi~T~l~~-----a~~~~~~~~~~ 248 (286)
T PRK12738 229 VNVATELKI-----AFAGAVKAWFA 248 (286)
T ss_pred EEeCcHHHH-----HHHHHHHHHHH
Confidence 999998875 33444555443
No 292
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.80 E-value=0.22 Score=46.06 Aligned_cols=193 Identities=13% Similarity=0.134 Sum_probs=114.1
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.++.-|+++.+. ..+..+ . ......++.+.+..++||.+.+--+ .++.+..+.++|.
T Consensus 22 N~~n~e~~~avi~AAee~~sPvIlq~s~~--~~~~~~-~--~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GF 96 (282)
T TIGR01858 22 NIHNLETIQAVVETAAEMRSPVILAGTPG--TFKHAG-T--EYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGV 96 (282)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEeCcc--HHhhCC-H--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 4455554 445577778766666311 111111 1 0112455556677899999975433 5688999999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCCCC----cEE-------------EecCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNFRI----PFV-------------CGCRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~~i----~~~-------------v~~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
+-|- .+. ++.+ ++.++....+..+ -.+ ...++++++.+-. +.|+|.+.+.-.
T Consensus 97 tSVM~DgS~-lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiG 175 (282)
T TIGR01858 97 RSAMIDGSH-FPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIG 175 (282)
T ss_pred CEEeecCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccC
Confidence 9993 333 3322 3334433333110 000 0034667777755 568888775421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+--| .++ ....-+++.++++++.+++|++.=.+.|+ ..+++.++...|..=
T Consensus 176 t~HG-----------------~yk-----------~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~-~~e~~~~ai~~Gi~K 226 (282)
T TIGR01858 176 TAHG-----------------LYK-----------KTPKLDFDRLAEIREVVDVPLVLHGASDV-PDEDVRRTIELGICK 226 (282)
T ss_pred cccc-----------------CcC-----------CCCccCHHHHHHHHHHhCCCeEEecCCCC-CHHHHHHHHHcCCeE
Confidence 1101 000 01234588999999888999886567777 478999999999999
Q ss_pred EEEccccccCCCHHHHHHHHHHHHh
Q 021609 249 VFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 249 V~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
|=++|.+.. ...+.+.+.+.
T Consensus 227 iNi~T~l~~-----a~~~~~~~~~~ 246 (282)
T TIGR01858 227 VNVATELKI-----AFSGAVKAYFA 246 (282)
T ss_pred EEeCcHHHH-----HHHHHHHHHHH
Confidence 999999885 33444544443
No 293
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=96.80 E-value=0.13 Score=47.23 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=57.4
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCH-HHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDP-QLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~-~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
|.+....++..++.+...|.|++ +|++ +|....... ..++.+ +..+++.++...-+....++.++++|
T Consensus 21 G~~~~~~sp~~~E~~a~~GfD~v~iD~E---------Hg~~~~~~l~~~i~a~-~~~g~~~lVRvp~~~~~~i~r~LD~G 90 (267)
T PRK10128 21 GLWLSSTTSYMAEIAATSGYDWLLIDGE---------HAPNTIQDLYHQLQAI-APYASQPVIRPVEGSKPLIKQVLDIG 90 (267)
T ss_pred EEEecCCCcHHHHHHHHcCCCEEEEccc---------cCCCCHHHHHHHHHHH-HhcCCCeEEECCCCCHHHHHHHhCCC
Confidence 45666778899999999999998 5553 211111111 223322 34566666665545557788999999
Q ss_pred CCEEEeCCCCCchhHHHHHHh
Q 021609 115 IDYVDESEVLTPADEENHINK 135 (310)
Q Consensus 115 ad~Vi~~~~~~~~~~~~~i~~ 135 (310)
|++|+.+...+.++..+.++.
T Consensus 91 A~GIivP~V~saeeA~~~V~a 111 (267)
T PRK10128 91 AQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_pred CCeeEecCcCCHHHHHHHHHh
Confidence 999987766666666555544
No 294
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=96.79 E-value=0.018 Score=53.62 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=64.7
Q ss_pred chhHHHHHHh----cCCCCcEEEecCCHHHHHHHHH------hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccC
Q 021609 126 PADEENHINK----HNFRIPFVCGCRNLGEALRRIR------EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 126 ~~~~~~~i~~----~~~~i~~~v~~~t~~ea~~~~~------~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
..+..+.+++ ..+...+.+.+.|.+++..+.+ +|+|+|.+-+...++.
T Consensus 186 i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~---------------------- 243 (308)
T PLN02716 186 ITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLE---------------------- 243 (308)
T ss_pred HHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCccccc----------------------
Confidence 3444455543 2244679999999999999999 9999998765411110
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+...+.+.+++..+. .+.|+- ++||| +++++.+...+|+|.+.+|.....
T Consensus 244 ---------~~~~~~e~l~~av~~~~~~~~lE--aSGGI-t~~ni~~yA~tGVD~Is~Galths 295 (308)
T PLN02716 244 ---------NGDVDVSMLKEAVELINGRFETE--ASGNV-TLDTVHKIGQTGVTYISSGALTHS 295 (308)
T ss_pred ---------ccCCCHHHHHHHHHhhCCCceEE--EECCC-CHHHHHHHHHcCCCEEEeCccccC
Confidence 011112222222111 235665 89999 799999999999999999986654
No 295
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=96.78 E-value=0.11 Score=47.35 Aligned_cols=86 Identities=15% Similarity=0.044 Sum_probs=57.7
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHH---HhhcCcceeeccccCcHHHHHHHHH
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEI---KQSVTIPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i---~~~~~iPv~vk~~~~~~~~a~~~~~ 112 (310)
|.+....++..++.+...|.|++ +|++ +|.. +.+.+..+ .+..+++.++.........++.+++
T Consensus 22 g~~~~~~sp~~~e~~a~~G~D~v~iD~E---------Hg~~---~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD 89 (256)
T PRK10558 22 GCWSALANPITTEVLGLAGFDWLVLDGE---------HAPN---DVSTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLD 89 (256)
T ss_pred EEEEcCCCcHHHHHHHhcCCCEEEEccc---------cCCC---CHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhC
Confidence 45667778899999999999998 5553 2221 12333332 3446777777766555677888999
Q ss_pred cCCCEEEeCCCCCchhHHHHHH
Q 021609 113 IGIDYVDESEVLTPADEENHIN 134 (310)
Q Consensus 113 aGad~Vi~~~~~~~~~~~~~i~ 134 (310)
+|+++|+.+...+.++..+.++
T Consensus 90 ~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 90 IGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred CCCCeeeecCcCCHHHHHHHHH
Confidence 9999998776655555555443
No 296
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.76 E-value=0.3 Score=45.23 Aligned_cols=182 Identities=15% Similarity=0.135 Sum_probs=109.7
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.++..|+++.+. ..+. .|. ......++.+.+..++||.+.+--+ +.+.+..+.++|.
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~~~~--~~~~-~g~--~~~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~Gf 98 (284)
T PRK12737 24 NIHNLETLQVVVETAAELRSPVILAGTPG--TFSY-AGT--DYIVAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGI 98 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcCcc--HHhh-CCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 4455554 445577788766665311 1111 111 0112345566777899999875433 4688899999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCCCCc----EE--E-----------ecCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNFRIP----FV--C-----------GCRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~~i~----~~--v-----------~~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
+-|- .+. ++.. +..++....+..+. .+ . .-+++++|.+-. +.|+|.+.+.-.
T Consensus 99 tSVMiDgS~-lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiG 177 (284)
T PRK12737 99 RSVMIDGSH-LSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIG 177 (284)
T ss_pred CeEEecCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccC
Confidence 9993 333 3322 33444443322110 00 0 034677888755 468888776421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+--| .++ ....-+++.++++++.+++|++.=.+.|+ ..+++.++.+.|..=
T Consensus 178 t~HG-----------------~y~-----------~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~-~~e~~~kai~~Gi~K 228 (284)
T PRK12737 178 TAHG-----------------LYK-----------GEPKLDFERLAEIREKVSIPLVLHGASGV-PDEDVKKAISLGICK 228 (284)
T ss_pred cccc-----------------ccC-----------CCCcCCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHCCCeE
Confidence 1101 010 01234588899999888999876566777 478899999999999
Q ss_pred EEEcccccc
Q 021609 249 VFVGSGVFK 257 (310)
Q Consensus 249 V~VGsai~~ 257 (310)
|=++|.+-.
T Consensus 229 iNi~T~l~~ 237 (284)
T PRK12737 229 VNVATELKI 237 (284)
T ss_pred EEeCcHHHH
Confidence 999998874
No 297
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.75 E-value=0.015 Score=52.10 Aligned_cols=52 Identities=19% Similarity=0.422 Sum_probs=46.1
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~ 263 (310)
...+.++++.+..++||- .+|||+|.+++..++.+|++-|++||.-.+ ||..
T Consensus 62 ~n~~~i~~i~~~~~~~vQ--vGGGIRs~~~v~~ll~~G~~rViiGt~av~--~p~~ 113 (241)
T COG0106 62 RNLEAIKEILEATDVPVQ--VGGGIRSLEDVEALLDAGVARVIIGTAAVK--NPDL 113 (241)
T ss_pred ccHHHHHHHHHhCCCCEE--eeCCcCCHHHHHHHHHCCCCEEEEecceec--CHHH
Confidence 346788999888899999 589999999999999999999999999986 7753
No 298
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.018 Score=51.97 Aligned_cols=117 Identities=24% Similarity=0.338 Sum_probs=66.4
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhc---cceEeecccChhH-------------HHHhhhc--------cCCc
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVM---GDIRVLRNMDDDE-------------VFTFAKK--------IAAP 209 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~---~~~~~l~~~~~d~-------------~~~~~~~--------~~~~ 209 (310)
.+.+.|+|++.+|++.+...+..+++...+.. -....++.++..+ +..+++. ....
T Consensus 84 ~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~ 163 (240)
T COG0284 84 AAADLGADAVTVHAFGGFDMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCS 163 (240)
T ss_pred HhhhcCCcEEEEeCcCCHHHHHHHHHHHhhcCceEEEEEeCCCchhhhhhhccccchHHHHHHHHHHHhccCCceEEEcC
Confidence 35678999999998766444444555554431 1134444444321 1111111 1111
Q ss_pred HHHHHHHhhcC--CCCEEEe---C------CCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 210 YDLVMQTKQLG--RLPVVHF---A------AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~i---A------~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
.+..+.+++.. +.+++.. + .+++.++.++ ...|+|.++|||.|+.++||...++++.+.+.
T Consensus 164 ~~e~~~ir~~~g~~~~iltPGIg~~~~~gdQ~~~~t~~~A---~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~ 235 (240)
T COG0284 164 AEEVAAIREILGPDFLILTPGIGAGSQGGDQGRVMTPGEA---VRAGADYIVVGRPITQAGDPVAAARAIAREIA 235 (240)
T ss_pred HHHHHHHHHhcCCCcEEECCCcCcCcCCCCcccccCHHHH---HhcCCCEEEEChhhhcCCChHHHHHHHHHHHH
Confidence 23344454443 2334321 3 3444445555 66899999999999999999988887766554
No 299
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=96.71 E-value=0.1 Score=47.45 Aligned_cols=85 Identities=15% Similarity=0.030 Sum_probs=57.1
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHH---HhhcCcceeeccccCcHHHHHHHHH
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEI---KQSVTIPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i---~~~~~iPv~vk~~~~~~~~a~~~~~ 112 (310)
|.+....+|..++.+...|.|++ +|++ +|.. +.+.+..+ .+..+++.++.........++.+++
T Consensus 15 G~~~~~~sp~~~e~~a~~G~D~v~iD~E---------Hg~~---~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD 82 (249)
T TIGR03239 15 GCWSALGNPITTEVLGLAGFDWLLLDGE---------HAPN---DVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLD 82 (249)
T ss_pred EEEEcCCCcHHHHHHHhcCCCEEEEecc---------cCCC---CHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhc
Confidence 45667788899999999999998 5553 2111 13333333 3345777777765555677889999
Q ss_pred cCCCEEEeCCCCCchhHHHHH
Q 021609 113 IGIDYVDESEVLTPADEENHI 133 (310)
Q Consensus 113 aGad~Vi~~~~~~~~~~~~~i 133 (310)
+|+++|+.+...+.++..+.+
T Consensus 83 ~Ga~gIivP~v~taeea~~~v 103 (249)
T TIGR03239 83 IGFYNFLIPFVESAEEAERAV 103 (249)
T ss_pred CCCCEEEecCcCCHHHHHHHH
Confidence 999999866655555555544
No 300
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=96.70 E-value=0.016 Score=52.17 Aligned_cols=77 Identities=27% Similarity=0.332 Sum_probs=61.6
Q ss_pred Ccc--cccC-CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCC-CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHH
Q 021609 36 GGV--IMDV-VTPEQARVAEEAGACAVMALERVPADIRSQGGVAR-MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILE 111 (310)
Q Consensus 36 ~g~--i~~~-~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~-~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~ 111 (310)
.|+ +.++ .|+..|+++++.|+.+++-| ...-||.+ ..++..++.+++..++||++.-.++.-+++..+.
T Consensus 136 eGF~VlPY~~~D~v~a~rLed~Gc~aVMPl-------gsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~Am 208 (267)
T CHL00162 136 KGFTVLPYINADPMLAKHLEDIGCATVMPL-------GSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAM 208 (267)
T ss_pred CCCEEeecCCCCHHHHHHHHHcCCeEEeec-------cCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHH
Confidence 554 3344 36789999999999998666 22234544 5688999999999999999998888888999999
Q ss_pred HcCCCEEE
Q 021609 112 AIGIDYVD 119 (310)
Q Consensus 112 ~aGad~Vi 119 (310)
+.|+|+|+
T Consensus 209 ElGaDgVL 216 (267)
T CHL00162 209 ELGASGVL 216 (267)
T ss_pred HcCCCEEe
Confidence 99999997
No 301
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.69 E-value=0.0056 Score=55.41 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=45.8
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~ 263 (310)
+...+.++++.+...+|+- ..|||+|.+|+..++..|++-|++||..++ ||..
T Consensus 60 ~~n~~~i~~i~~~~~~~v~--vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~--~p~~ 112 (243)
T TIGR01919 60 GNNEMMLEEVVKLLVVVEE--LSGGRRDDSSLRAALTGGRARVNGGTAALE--NPWW 112 (243)
T ss_pred cchHHHHHHHHHHCCCCEE--EcCCCCCHHHHHHHHHcCCCEEEECchhhC--CHHH
Confidence 3446788888887788998 589999999999999999999999999997 7763
No 302
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.68 E-value=0.11 Score=51.71 Aligned_cols=40 Identities=30% Similarity=0.470 Sum_probs=33.3
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
.+.++++++. .+++|+ .|.|.|.+.+..++++|||+|-||
T Consensus 256 ~~~i~~ik~~~p~~~v~---agnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 256 LEALRAVRALDPGVPIV---AGNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHHHHHCCCCeEE---eeccCCHHHHHHHHHcCCCEEEEC
Confidence 5678888765 467886 599999999999999999999854
No 303
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.68 E-value=0.065 Score=46.49 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHH
Q 021609 104 FVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV 181 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~ 181 (310)
.+.++.+.+.|++.+- ........+..+.+++..+++.++++ +.+.+++..+.++|++++..-+.
T Consensus 19 ~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~------------- 85 (190)
T cd00452 19 LALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGL------------- 85 (190)
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCC-------------
Confidence 3567888899999994 33333344455555554445666664 67789999999999999853210
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
+.+..+..+. .+.|++ =|+.|++++.++++.|||.+.+
T Consensus 86 ---------------------------~~~~~~~~~~-~~~~~i----~gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 86 ---------------------------DPEVVKAANR-AGIPLL----PGVATPTEIMQALELGADIVKL 123 (190)
T ss_pred ---------------------------CHHHHHHHHH-cCCcEE----CCcCCHHHHHHHHHCCCCEEEE
Confidence 0122222232 456776 3888999999999999999997
No 304
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.68 E-value=0.038 Score=53.56 Aligned_cols=67 Identities=19% Similarity=0.316 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEe
Q 021609 149 LGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHF 227 (310)
Q Consensus 149 ~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~i 227 (310)
.+++..+.++|+|+|.+-...+ + .....+.++++++. .+++++
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~g--~--------------------------------~~~~~~~v~~ik~~~p~~~vi-- 198 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHG--H--------------------------------STRIIELVKKIKTKYPNLDLI-- 198 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCCC--C--------------------------------ChhHHHHHHHHHhhCCCCcEE--
Confidence 3667777888999988654321 1 01124567777664 367775
Q ss_pred CCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 228 AAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 228 A~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
.|+|.|++++..++++|+|+|.+|
T Consensus 199 -~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 199 -AGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred -EEecCCHHHHHHHHHcCCCEEEEC
Confidence 489999999999999999999987
No 305
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=96.67 E-value=0.027 Score=51.51 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=64.9
Q ss_pred chhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 126 PADEENHINKHNFR-IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+.++..++.-+. ..+-+++.|.+++.++.++|+|+|.+.+.. ++++
T Consensus 174 i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm~--------------------------~e~~----- 222 (280)
T COG0157 174 ITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNMS--------------------------PEEL----- 222 (280)
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCCC--------------------------HHHH-----
Confidence 45566666554344 448899999999999999999999886542 1111
Q ss_pred ccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 205 KIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.+. ..-.+++=+|||| |++++.....+|.|.+.+|.-...+
T Consensus 223 -----~~av~~l~--~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galths~ 268 (280)
T COG0157 223 -----KEAVKLLG--LAGRALLEASGGI-TLENIREYAETGVDVISVGALTHSA 268 (280)
T ss_pred -----HHHHHHhc--cCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccccCC
Confidence 11222221 1113443489999 7999999999999999999766653
No 306
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=96.64 E-value=0.0024 Score=57.93 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=41.6
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
..+.++++.+.+++|+. ..|||++ +++.+++++||+.|++||+++..
T Consensus 64 n~~~i~~i~~~~~~~v~--vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~ 110 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQ--VGGGIND-TNAQEWLDEGASHVIVTSWLFTK 110 (253)
T ss_pred cHHHHHHHHHhCCCCEE--EeCCcCH-HHHHHHHHcCCCEEEECcHHHhC
Confidence 46778888877889998 6899986 99999999999999999999973
No 307
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.64 E-value=0.025 Score=53.20 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=76.3
Q ss_pred cCcceee--ccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHh-c-CCCCcEEEe--c--CCHHHHHHHHHh--CC
Q 021609 91 VTIPVMA--KARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINK-H-NFRIPFVCG--C--RNLGEALRRIRE--GA 160 (310)
Q Consensus 91 ~~iPv~v--k~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~-~-~~~i~~~v~--~--~t~~ea~~~~~~--Ga 160 (310)
+++|++. .+..+.++.+..+.+.|-=.++ +.-+++++..+++++ . .....+.++ + .+.+.+..+.++ ++
T Consensus 44 ~~iPii~AnMdtv~~~~mA~~la~~g~~~~i-Hk~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~ 122 (343)
T TIGR01305 44 SGVPIIAANMDTVGTFEMAAALSQHSIFTAI-HKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQL 122 (343)
T ss_pred eCCceEecCCCcccCHHHHHHHHHCCCeEEE-eeCCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCC
Confidence 5899887 3555667778888877766554 333455665666644 1 112222223 2 233445556666 48
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~ 239 (310)
|+|.+....+ +. ....+.++++++.. +.+|+ .|.|-|++++.
T Consensus 123 d~iviD~AhG--hs--------------------------------~~~i~~ik~ir~~~p~~~vi---aGNV~T~e~a~ 165 (343)
T TIGR01305 123 KFICLDVANG--YS--------------------------------EHFVEFVKLVREAFPEHTIM---AGNVVTGEMVE 165 (343)
T ss_pred CEEEEECCCC--cH--------------------------------HHHHHHHHHHHhhCCCCeEE---EecccCHHHHH
Confidence 9988764322 20 11244566776653 45554 47799999999
Q ss_pred HHHHcCCCEEEEc
Q 021609 240 MMMQLGCDGVFVG 252 (310)
Q Consensus 240 ~~l~~GadgV~VG 252 (310)
.++++|||++.||
T Consensus 166 ~Li~aGAD~ikVg 178 (343)
T TIGR01305 166 ELILSGADIVKVG 178 (343)
T ss_pred HHHHcCCCEEEEc
Confidence 9999999999887
No 308
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.64 E-value=0.066 Score=50.56 Aligned_cols=124 Identities=19% Similarity=0.250 Sum_probs=77.8
Q ss_pred cCcceeec--cccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEec----CCHHHHHHHHHhCCCEEE
Q 021609 91 VTIPVMAK--ARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGC----RNLGEALRRIREGAAMIR 164 (310)
Q Consensus 91 ~~iPv~vk--~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~----~t~~ea~~~~~~Gad~V~ 164 (310)
.++|++.. +.....+.+..+.++|.=+++... +++.++.+.+++....+.+.+.+ .+.+.+..+.+.|+++|.
T Consensus 33 l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~-~~~~~~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~eagv~~I~ 111 (325)
T cd00381 33 LNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRN-MSIEEQAEEVRKVKGRLLVGAAVGTREDDKERAEALVEAGVDVIV 111 (325)
T ss_pred cCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCC-CCHHHHHHHHHHhccCceEEEecCCChhHHHHHHHHHhcCCCEEE
Confidence 46888763 333445667777778876666432 45566666665522223333322 334556667788999987
Q ss_pred EcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHH
Q 021609 165 TKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQ 243 (310)
Q Consensus 165 v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~ 243 (310)
+....+ + .....+.++++++.. ++||+ .|.+.|++++..+.+
T Consensus 112 vd~~~G--~--------------------------------~~~~~~~i~~ik~~~p~v~Vi---~G~v~t~~~A~~l~~ 154 (325)
T cd00381 112 IDSAHG--H--------------------------------SVYVIEMIKFIKKKYPNVDVI---AGNVVTAEAARDLID 154 (325)
T ss_pred EECCCC--C--------------------------------cHHHHHHHHHHHHHCCCceEE---ECCCCCHHHHHHHHh
Confidence 753221 1 011245667776643 47776 288999999999999
Q ss_pred cCCCEEEEc
Q 021609 244 LGCDGVFVG 252 (310)
Q Consensus 244 ~GadgV~VG 252 (310)
+|+|++.+|
T Consensus 155 aGaD~I~vg 163 (325)
T cd00381 155 AGADGVKVG 163 (325)
T ss_pred cCCCEEEEC
Confidence 999999984
No 309
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=96.63 E-value=0.013 Score=52.22 Aligned_cols=77 Identities=31% Similarity=0.405 Sum_probs=54.4
Q ss_pred Ccc--cccC-CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCC-CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHH
Q 021609 36 GGV--IMDV-VTPEQARVAEEAGACAVMALERVPADIRSQGGVAR-MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILE 111 (310)
Q Consensus 36 ~g~--i~~~-~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~-~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~ 111 (310)
.|+ +-++ .|+..|+++++.|+.+++-+. ..-|+.+ ..++..++.+++..++||++.-.++.-.++..+.
T Consensus 122 eGF~VlPY~~~D~v~akrL~d~GcaavMPlg-------sPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AM 194 (247)
T PF05690_consen 122 EGFVVLPYCTDDPVLAKRLEDAGCAAVMPLG-------SPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM 194 (247)
T ss_dssp TT-EEEEEE-S-HHHHHHHHHTT-SEBEEBS-------SSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHH
T ss_pred CCCEEeecCCCCHHHHHHHHHCCCCEEEecc-------cccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH
Confidence 554 3344 357899999999999886662 2234443 5678999999999999999998888778899999
Q ss_pred HcCCCEEE
Q 021609 112 AIGIDYVD 119 (310)
Q Consensus 112 ~aGad~Vi 119 (310)
+.|+|+|+
T Consensus 195 ElG~daVL 202 (247)
T PF05690_consen 195 ELGADAVL 202 (247)
T ss_dssp HTT-SEEE
T ss_pred HcCCceee
Confidence 99999997
No 310
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=96.59 E-value=0.038 Score=51.99 Aligned_cols=125 Identities=18% Similarity=0.140 Sum_probs=80.6
Q ss_pred hcCcceeecc--ccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCC-CCcEEEecC-CHHHHHH---HHHhC--C
Q 021609 90 SVTIPVMAKA--RIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNF-RIPFVCGCR-NLGEALR---RIREG--A 160 (310)
Q Consensus 90 ~~~iPv~vk~--~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~-~i~~~v~~~-t~~ea~~---~~~~G--a 160 (310)
..+.|+.++- .....+.++.+.+.|.-.++.- +++++..+++++... ++.+.+++. +.++..+ +.++| +
T Consensus 32 ~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK--~~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~ 109 (321)
T TIGR01306 32 KFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHR--FDEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTP 109 (321)
T ss_pred EecCcEEeeccchhhhHHHHHHHHHcCCEEEEec--CCHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCC
Confidence 3578888752 2223567888888887777533 456666666666433 455666643 3333333 45667 6
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~ 240 (310)
|+|.+....+ +. ..-++.++++++..+.|.+ ..|+|.+++++..
T Consensus 110 d~i~~D~ahg--~s--------------------------------~~~~~~i~~i~~~~p~~~v--i~GnV~t~e~a~~ 153 (321)
T TIGR01306 110 EYITIDIAHG--HS--------------------------------NSVINMIKHIKTHLPDSFV--IAGNVGTPEAVRE 153 (321)
T ss_pred CEEEEeCccC--ch--------------------------------HHHHHHHHHHHHhCCCCEE--EEecCCCHHHHHH
Confidence 8887654321 20 1124567777776666755 2588999999999
Q ss_pred HHHcCCCEEEEc
Q 021609 241 MMQLGCDGVFVG 252 (310)
Q Consensus 241 ~l~~GadgV~VG 252 (310)
++++|||++.||
T Consensus 154 l~~aGad~I~V~ 165 (321)
T TIGR01306 154 LENAGADATKVG 165 (321)
T ss_pred HHHcCcCEEEEC
Confidence 999999999988
No 311
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=96.57 E-value=0.18 Score=45.14 Aligned_cols=187 Identities=22% Similarity=0.226 Sum_probs=98.5
Q ss_pred CcccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
=|.+..+.+|=+++.+..+|.||+ ++-+..|.+.+. ....++.+...-.-|++ ....+....++.+++.|
T Consensus 19 iGlw~~l~~p~~~Ei~A~aGfDwl~iD~EHapnd~~s--------l~~qL~a~~~~~~~pvV-R~p~g~~~~Ikq~LD~G 89 (255)
T COG3836 19 IGLWLSLPDPYMAEILATAGFDWLLIDGEHAPNDLQS--------LLHQLQAVAAYASPPVV-RPPVGDPVMIKQLLDIG 89 (255)
T ss_pred EEeeecCCcHHHHHHHHhcCCCEEEecccccCccHHH--------HHHHHHHhhccCCCCee-eCCCCCHHHHHHHHccc
Confidence 457888888889999999999998 444333322211 12333333332344554 33345567789999999
Q ss_pred CCEEEeCCCCCchhHHHH------------------------------HHhcCCCCcEEEecCCHHHHHH--HH--HhCC
Q 021609 115 IDYVDESEVLTPADEENH------------------------------INKHNFRIPFVCGCRNLGEALR--RI--REGA 160 (310)
Q Consensus 115 ad~Vi~~~~~~~~~~~~~------------------------------i~~~~~~i~~~v~~~t~~ea~~--~~--~~Ga 160 (310)
|..++.+-.-+.++.... +...+-++++++.+.|.+-... ++ -.|+
T Consensus 90 AqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~gl~nLDaIaaveGV 169 (255)
T COG3836 90 AQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAGLDNLDAIAAVEGV 169 (255)
T ss_pred cceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHHHHHHHHHHccCCC
Confidence 999975433233332222 2222223555565555432222 11 1377
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~ 240 (310)
|.|.+.+. ++... +...-..+-+++. ......+..++...+..-++ -.+++++.+
T Consensus 170 DgvFiGPa----DLaas----------~G~~gn~~hpeV~------~aI~~~~~~i~aaGKaagil-----~~~p~~a~~ 224 (255)
T COG3836 170 DGVFIGPA----DLAAS----------LGHLGNPGHPEVQ------AAIEHIIARIRAAGKAAGIL-----AADPADARR 224 (255)
T ss_pred CeEEECHH----HHHHH----------cCCCCCCCCHHHH------HHHHHHHHHHHhcCCccccc-----cCCHHHHHH
Confidence 87766432 11000 0000001111110 01122344455555544432 147899999
Q ss_pred HHHcCCCEEEEccccc
Q 021609 241 MMQLGCDGVFVGSGVF 256 (310)
Q Consensus 241 ~l~~GadgV~VGsai~ 256 (310)
++++||.-|.+|+-.+
T Consensus 225 yl~lGa~fvavG~D~~ 240 (255)
T COG3836 225 YLALGATFVAVGSDTG 240 (255)
T ss_pred HHHhCCeEEEEeccHH
Confidence 9999999999997544
No 312
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.57 E-value=0.019 Score=51.58 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=43.4
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
....+.++++.+...+|+. ..|||++.+|+.+++.+||+-|++||..++
T Consensus 64 ~~n~~~i~~i~~~~~~~v~--vgGGir~~edv~~~l~~Ga~~viigt~~~~ 112 (233)
T cd04723 64 GDNDEAIRELAAAWPLGLW--VDGGIRSLENAQEWLKRGASRVIVGTETLP 112 (233)
T ss_pred CccHHHHHHHHHhCCCCEE--EecCcCCHHHHHHHHHcCCCeEEEcceecc
Confidence 3447788888887789998 689999999999999999999999999987
No 313
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.56 E-value=0.034 Score=54.86 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEE---e
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVD---E 120 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi---~ 120 (310)
.+.+..+.++|++.| .++.. .|.+ ....+.++++++.+ ++||+++... ..+.++.+.++|||+|. +
T Consensus 226 ~~r~~~L~~aG~d~I-~vd~a-------~g~~-~~~~~~i~~i~~~~~~~~vi~G~v~-t~~~a~~l~~aGad~i~vg~g 295 (450)
T TIGR01302 226 KERAEALVKAGVDVI-VIDSS-------HGHS-IYVIDSIKEIKKTYPDLDIIAGNVA-TAEQAKALIDAGADGLRVGIG 295 (450)
T ss_pred HHHHHHHHHhCCCEE-EEECC-------CCcH-hHHHHHHHHHHHhCCCCCEEEEeCC-CHHHHHHHHHhCCCEEEECCC
Confidence 477889999999976 44311 1111 12367888898884 8999986543 35789999999999993 1
Q ss_pred CCC---------C--CchhHHHHHHh--cCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEcC
Q 021609 121 SEV---------L--TPADEENHINK--HNFRIPFVC--GCRNLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 121 ~~~---------~--~~~~~~~~i~~--~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~g 167 (310)
+.. . +.......+.+ +..++++++ ++++..++.++..+||+.|.+.+
T Consensus 296 ~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~ 357 (450)
T TIGR01302 296 PGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGS 357 (450)
T ss_pred CCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 210 1 11122222222 235788888 69999999999999999998764
No 314
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=96.56 E-value=0.02 Score=52.08 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=21.2
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
++.|- |+|||+|.+++.+++.+|.+-
T Consensus 195 ~vgIK--AsGGIrt~~~A~~~i~ag~~~ 220 (257)
T PRK05283 195 TVGFK--PAGGVRTAEDAAQYLALADEI 220 (257)
T ss_pred CeeEE--ccCCCCCHHHHHHHHHHHHHH
Confidence 35565 899999999999999886553
No 315
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.56 E-value=0.019 Score=51.93 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=43.2
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
...+.++++.+.. .|+- ..|||+|.+|+.+++.+||+-|++||..++ ||.
T Consensus 61 ~n~~~i~~i~~~~-~~v~--vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~--~p~ 110 (241)
T PRK14114 61 ENLPVLEKLSEFA-EHIQ--IGGGIRSLDYAEKLRKLGYRRQIVSSKVLE--DPS 110 (241)
T ss_pred chHHHHHHHHhhc-CcEE--EecCCCCHHHHHHHHHCCCCEEEECchhhC--CHH
Confidence 3467788887765 6987 589999999999999999999999999997 775
No 316
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0036 Score=58.48 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=56.9
Q ss_pred CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhc
Q 021609 222 LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVG 294 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 294 (310)
.|+. +.|||.+..|...++.+|++-|.|.++++-++- -..+.+...+++.+.-+.+.++.++-|..+.+
T Consensus 357 F~l~--~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~--~~V~~~Ca~LK~~m~~~~~~ti~~~~G~SL~~ 425 (471)
T KOG1799|consen 357 FSLS--GIGGVETGYDAAEFILLGSNTVQVCTGVMMHGY--GHVKTLCAELKDFMKQHNFSTIEEFRGHSLQY 425 (471)
T ss_pred Cccc--cccCcccccchhhHhhcCCcHhhhhhHHHhcCc--chHHHHHHHHHHHHHHcCchhhhhccCcchhh
Confidence 5787 669999999999999999999999999997543 45677888888888777788888887776543
No 317
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=96.51 E-value=0.49 Score=42.00 Aligned_cols=174 Identities=21% Similarity=0.178 Sum_probs=101.2
Q ss_pred cccCCCHHHHHHHHHcCC-cEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC----cHHHHHHHHHc
Q 021609 39 IMDVVTPEQARVAEEAGA-CAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG----HFVEAQILEAI 113 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga-~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~----~~~~a~~~~~a 113 (310)
+.|-.|.+..+.+.+.|. +++ --||. ..+..+ . ...+.++++++..+-||.+..... ..++++.+.+.
T Consensus 4 ~lDsAd~~~i~~~~~~~~i~Gv-TTNPs--ll~k~g-~---~~~~~~~~i~~~~~g~vs~qv~~~~~~~mi~~a~~l~~~ 76 (213)
T TIGR00875 4 FLDTANVEEIKKAAELGILAGV-TTNPS--LIAKEG-R---SFWEVLKEIQEAVEGPVSAETISLDAEGMVEEAKELAKL 76 (213)
T ss_pred EEcCCCHHHHHHHHhcCCcceE-eCCHH--HHHhcC-C---CHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHHHHh
Confidence 345566777888888775 454 44433 122211 1 124677777766555666543222 24566777777
Q ss_pred CCCEEE-eCCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhccceEe
Q 021609 114 GIDYVD-ESEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 114 Gad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
+-+.++ ++....=....+.+++ .++.+.+ .+-+.+.+..+.++|++||... |+..
T Consensus 77 ~~~i~iKIP~T~~Gl~A~~~L~~--~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~-------------------- 134 (213)
T TIGR00875 77 APNIVVKIPMTSEGLKAVKILKK--EGIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLD-------------------- 134 (213)
T ss_pred CCCeEEEeCCCHHHHHHHHHHHH--CCCceeEEEecCHHHHHHHHHcCCCEEEeecchHH--------------------
Confidence 666555 4432222234444444 3544433 3789999999999999999864 2210
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHh----hc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTK----QL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~----~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.. ...+.+.++++. .. .+..|+ ...++++.++.++..+|||.+-+.-.+++
T Consensus 135 --d~-----------g~dg~~~v~~~~~~~~~~~~~tkIl---aAS~r~~~~v~~~~~~G~d~vTip~~vl~ 190 (213)
T TIGR00875 135 --DI-----------GGDGMKLIEEVKTIFENHAPDTEVI---AASVRHPRHVLEAALIGADIATMPLDVMQ 190 (213)
T ss_pred --Hc-----------CCCHHHHHHHHHHHHHHcCCCCEEE---EeccCCHHHHHHHHHcCCCEEEcCHHHHH
Confidence 00 112233333332 22 356665 46889999999999999999987755443
No 318
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.48 E-value=0.52 Score=43.68 Aligned_cols=182 Identities=14% Similarity=0.135 Sum_probs=110.1
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.+..-|+++.+. ..+. .|. ......++.+.+..++||.+.+--+ .++.+..+.++|.
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~~~~--~~~~-~g~--~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~Gf 98 (284)
T PRK09195 24 NIHNLETMQVVVETAAELHSPVIIAGTPG--TFSY-AGT--EYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGV 98 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcChh--HHhh-CCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 3445554 445567777766666311 1111 111 0113456666777899999875333 5788899999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCCCCc----EE-------------EecCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNFRIP----FV-------------CGCRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~~i~----~~-------------v~~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
+-|- .+. ++.+ ++.++....+..+. .+ ..-++++++.+-. +.|+|.+.+.-.
T Consensus 99 tSVM~DgS~-l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiG 177 (284)
T PRK09195 99 RSVMIDGSH-LPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIG 177 (284)
T ss_pred CEEEeCCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccC
Confidence 9993 333 3322 33444433331100 00 0035777888855 468888776421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+ -+ ..++. ...-+++.++++++..++|+++=.+.|+ ..+++.++.+.|..=
T Consensus 178 t--~H---------------G~y~~-----------~p~Ld~~~L~~I~~~~~vPLVLHGgSG~-~~e~~~~ai~~Gi~K 228 (284)
T PRK09195 178 T--AH---------------GMYKG-----------EPKLDFDRLENIRQWVNIPLVLHGASGL-PTKDIQQTIKLGICK 228 (284)
T ss_pred c--cc---------------cccCC-----------CCcCCHHHHHHHHHHhCCCeEEecCCCC-CHHHHHHHHHcCCeE
Confidence 1 11 01110 1234588999998888999886567787 478999999999999
Q ss_pred EEEcccccc
Q 021609 249 VFVGSGVFK 257 (310)
Q Consensus 249 V~VGsai~~ 257 (310)
|=++|.+..
T Consensus 229 iNi~T~l~~ 237 (284)
T PRK09195 229 VNVATELKI 237 (284)
T ss_pred EEeCcHHHH
Confidence 999998874
No 319
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.48 E-value=0.021 Score=54.25 Aligned_cols=124 Identities=21% Similarity=0.298 Sum_probs=75.9
Q ss_pred cCcceee--ccccCcHHHHHHHHHcCCCEEEeCCCCCchh---HHHHHHhc--------CCCCcEEEec--C--CHHHHH
Q 021609 91 VTIPVMA--KARIGHFVEAQILEAIGIDYVDESEVLTPAD---EENHINKH--------NFRIPFVCGC--R--NLGEAL 153 (310)
Q Consensus 91 ~~iPv~v--k~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~---~~~~i~~~--------~~~i~~~v~~--~--t~~ea~ 153 (310)
.++|++. .+.....+.+..+...|.=+|+... .+.++ ..+.+++. ...+.+.+.+ . +.+.+.
T Consensus 36 l~iPivsa~MDtVte~~mAiama~~Gglgvih~~-~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~ 114 (352)
T PF00478_consen 36 LKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRN-MSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAE 114 (352)
T ss_dssp ESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESS-SCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHH
T ss_pred ecCceEecCccccchHHHHHHHHHhcCCceecCC-CCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHH
Confidence 5889887 3455556778778888777775332 23332 33333321 1235555543 3 255666
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCC
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGV 232 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI 232 (310)
.+.++|+|++.+....+ +.. ...+.++++++. .++||+ .|.|
T Consensus 115 ~L~~agvD~ivID~a~g--~s~--------------------------------~~~~~ik~ik~~~~~~~vi---aGNV 157 (352)
T PF00478_consen 115 ALVEAGVDVIVIDSAHG--HSE--------------------------------HVIDMIKKIKKKFPDVPVI---AGNV 157 (352)
T ss_dssp HHHHTT-SEEEEE-SST--TSH--------------------------------HHHHHHHHHHHHSTTSEEE---EEEE
T ss_pred HHHHcCCCEEEccccCc--cHH--------------------------------HHHHHHHHHHHhCCCceEE---eccc
Confidence 67789999998864422 100 013456666654 458887 4999
Q ss_pred CCHHHHHHHHHcCCCEEEEc
Q 021609 233 ATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 233 ~t~~d~~~~l~~GadgV~VG 252 (310)
-|.+.+..++++|||+|-||
T Consensus 158 ~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 158 VTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp -SHHHHHHHHHTT-SEEEES
T ss_pred CCHHHHHHHHHcCCCEEEEe
Confidence 99999999999999999999
No 320
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.47 E-value=0.62 Score=43.27 Aligned_cols=183 Identities=13% Similarity=0.149 Sum_probs=106.1
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccC-cHHHHHHHHHc
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIG-HFVEAQILEAI 113 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~-~~~~a~~~~~a 113 (310)
++.+.+. .+++++.++.-|+++.+. ..+...|. ......++...+.. ++||.+.+--+ .++.+..+.++
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIlq~~~~--~~~~~~g~--~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~ 99 (288)
T TIGR00167 24 NINNLETINAVLEAAAEEKSPVIIQFSNG--AAKYIAGL--GAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKA 99 (288)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEECCcc--hhhccCCH--HHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHc
Confidence 3445554 445677788866666311 11110111 00123444445556 89999875433 56888999999
Q ss_pred CCCEEE--eCCCCCch-------hHHHHHHhcCCCCc----EE---------E----ecCCHHHHHHHH-HhCCCEEEEc
Q 021609 114 GIDYVD--ESEVLTPA-------DEENHINKHNFRIP----FV---------C----GCRNLGEALRRI-REGAAMIRTK 166 (310)
Q Consensus 114 Gad~Vi--~~~~~~~~-------~~~~~i~~~~~~i~----~~---------v----~~~t~~ea~~~~-~~Gad~V~v~ 166 (310)
|.+-|- .+. ++.+ ++.++....+..+. .+ . .-++++++.+-. +.|+|.+.+.
T Consensus 100 GftSVMiDgS~-lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 178 (288)
T TIGR00167 100 GFSSVMIDGSH-EPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAA 178 (288)
T ss_pred CCCEEEecCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeec
Confidence 999993 333 3322 33333332221110 00 0 034667777755 4588887754
Q ss_pred CCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccC-CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC
Q 021609 167 GEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG 245 (310)
Q Consensus 167 g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G 245 (310)
-.+--| .++ .... -+++.++++++.+++|++.=.+.|+ ..+++.++...|
T Consensus 179 iGt~HG-----------------~y~-----------~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~-~~e~~~~ai~~G 229 (288)
T TIGR00167 179 IGNVHG-----------------VYK-----------GEPKGLDFERLEEIQKYVNLPLVLHGGSGI-PDEEIKKAISLG 229 (288)
T ss_pred cCcccc-----------------ccC-----------CCCCccCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHcC
Confidence 211101 000 0112 4688999999988999885456666 458999999999
Q ss_pred CCEEEEcccccc
Q 021609 246 CDGVFVGSGVFK 257 (310)
Q Consensus 246 adgV~VGsai~~ 257 (310)
..=|=++|.+..
T Consensus 230 i~KiNi~T~l~~ 241 (288)
T TIGR00167 230 VVKVNIDTELQI 241 (288)
T ss_pred CeEEEcChHHHH
Confidence 999999998874
No 321
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.45 E-value=0.04 Score=51.88 Aligned_cols=124 Identities=17% Similarity=0.225 Sum_probs=78.2
Q ss_pred cCcceee--ccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcC--C-C-CcEEEecC--CHHHHHHHHH--hCC
Q 021609 91 VTIPVMA--KARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHN--F-R-IPFVCGCR--NLGEALRRIR--EGA 160 (310)
Q Consensus 91 ~~iPv~v--k~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~--~-~-i~~~v~~~--t~~ea~~~~~--~Ga 160 (310)
+++|++. .+..+.++.+..+.+.|.=.++ +.-+++++..+++++.. . + +.+.+++. +.+.+..+.+ +|+
T Consensus 45 ~giPii~AnMdTV~~~~mA~~la~~g~~~~i-Hk~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~ 123 (346)
T PRK05096 45 SGVPIIAANMDTVGTFEMAKALASFDILTAV-HKHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPAL 123 (346)
T ss_pred cCCceEecCCCccccHHHHHHHHHCCCeEEE-ecCCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCC
Confidence 4699887 3555667888888888866664 33345566666665422 1 2 22222322 2333444555 489
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~ 239 (310)
|+|.+....+ +. ....+.++++++. .+++|+ .|.|-|++.+.
T Consensus 124 D~iviD~AhG--hs--------------------------------~~~i~~ik~ik~~~P~~~vI---aGNV~T~e~a~ 166 (346)
T PRK05096 124 NFICIDVANG--YS--------------------------------EHFVQFVAKAREAWPDKTIC---AGNVVTGEMVE 166 (346)
T ss_pred CEEEEECCCC--cH--------------------------------HHHHHHHHHHHHhCCCCcEE---EecccCHHHHH
Confidence 9998764321 20 1124567777664 467876 59999999999
Q ss_pred HHHHcCCCEEEEc
Q 021609 240 MMMQLGCDGVFVG 252 (310)
Q Consensus 240 ~~l~~GadgV~VG 252 (310)
.++.+|||++-||
T Consensus 167 ~Li~aGAD~vKVG 179 (346)
T PRK05096 167 ELILSGADIVKVG 179 (346)
T ss_pred HHHHcCCCEEEEc
Confidence 9999999999766
No 322
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.44 E-value=0.64 Score=42.90 Aligned_cols=194 Identities=13% Similarity=0.145 Sum_probs=113.3
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.+...|+++.+. ..+. .|. ......++.+.+...+||.+.+--+ .++.+..+.++|.
T Consensus 19 N~~n~e~~~avi~AAe~~~sPvIi~~~~~--~~~~-~~~--~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~Gf 93 (276)
T cd00947 19 NINNLETLKAILEAAEETRSPVILQISEG--AIKY-AGL--ELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGF 93 (276)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEEcCcc--hhhh-CCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCC
Confidence 3445543 445577788866666321 1111 110 1113455566677899999975433 4688889999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCCCCc----EE--E---------ecCCHHHHHHHH-HhCCCEEEEcCCCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNFRIP----FV--C---------GCRNLGEALRRI-REGAAMIRTKGEAG 170 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~~i~----~~--v---------~~~t~~ea~~~~-~~Gad~V~v~g~~~ 170 (310)
+-|- .+. ++.. ++.++.+..+..+. .+ . .-++++++.+-. +.|+|.+.+.-.+
T Consensus 94 tSVMiD~S~-l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt- 171 (276)
T cd00947 94 SSVMIDGSH-LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGT- 171 (276)
T ss_pred CEEEeCCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCc-
Confidence 9993 332 3322 33344433322110 01 0 134677787765 4588887754211
Q ss_pred CcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 171 TGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 171 ~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
-+ ..++. ....-+++.++++.+..++|++.=.+.|+ ..+++.++.+.|..=|=
T Consensus 172 -~H---------------G~Y~~----------~~p~L~~~~L~~i~~~~~vPLVlHGgSG~-~~e~~~~ai~~Gi~KiN 224 (276)
T cd00947 172 -SH---------------GAYKG----------GEPKLDFDRLKEIAERVNVPLVLHGGSGI-PDEQIRKAIKLGVCKIN 224 (276)
T ss_pred -cc---------------cccCC----------CCCccCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHcCCeEEE
Confidence 01 00000 01234588999999888999885456666 46889999999999999
Q ss_pred EccccccCCCHHHHHHHHHHHHh
Q 021609 251 VGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 251 VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
++|.+.. ...+.+.+.++
T Consensus 225 i~T~l~~-----a~~~~~~~~~~ 242 (276)
T cd00947 225 INTDLRL-----AFTAALREYLA 242 (276)
T ss_pred eChHHHH-----HHHHHHHHHHH
Confidence 9999874 33444555543
No 323
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.43 E-value=0.055 Score=51.04 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=79.2
Q ss_pred cCcceeeccc--cCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCC-CCcEEEecC----CHHHHHHHHHhCC--C
Q 021609 91 VTIPVMAKAR--IGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNF-RIPFVCGCR----NLGEALRRIREGA--A 161 (310)
Q Consensus 91 ~~iPv~vk~~--~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~-~i~~~v~~~----t~~ea~~~~~~Ga--d 161 (310)
.+.|+.++-- ....+.++.+.+.|.-.++.- +++++...+.++..+ ++.+.+++. +.+++..+.++|+ |
T Consensus 36 l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k--~~~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d 113 (326)
T PRK05458 36 FKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR--FDPEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPE 113 (326)
T ss_pred ecCcEEEecccchhHHHHHHHHHHcCCEEEEec--CCHHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCC
Confidence 5678877522 123466788888887777533 455655666655433 455555543 2355666677855 9
Q ss_pred EEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHH
Q 021609 162 MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 162 ~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~ 240 (310)
+|.+....+ +. ....++++++++.. ++||+ .|.|.|.+++..
T Consensus 114 ~i~iD~a~g--h~--------------------------------~~~~e~I~~ir~~~p~~~vi---~g~V~t~e~a~~ 156 (326)
T PRK05458 114 YITIDIAHG--HS--------------------------------DSVINMIQHIKKHLPETFVI---AGNVGTPEAVRE 156 (326)
T ss_pred EEEEECCCC--ch--------------------------------HHHHHHHHHHHhhCCCCeEE---EEecCCHHHHHH
Confidence 998854321 10 11245677787654 47776 367999999999
Q ss_pred HHHcCCCEEEEc
Q 021609 241 MMQLGCDGVFVG 252 (310)
Q Consensus 241 ~l~~GadgV~VG 252 (310)
+.++|+|++.||
T Consensus 157 l~~aGad~i~vg 168 (326)
T PRK05458 157 LENAGADATKVG 168 (326)
T ss_pred HHHcCcCEEEEC
Confidence 999999999987
No 324
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.42 E-value=0.77 Score=42.59 Aligned_cols=194 Identities=13% Similarity=0.158 Sum_probs=112.0
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC--cceeeccccC-cHHHHHHHHHc
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT--IPVMAKARIG-HFVEAQILEAI 113 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~--iPv~vk~~~~-~~~~a~~~~~a 113 (310)
++.+.+. .+++++.+...|+++.+. ..+..+|. ......++.+.+... +||.+.+--+ .++.++.+.++
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIl~~~~~--~~~~~~~~--~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~ 99 (286)
T PRK08610 24 NLNNLEFTQAILEASQEENAPVILGVSEG--AARYMSGF--YTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDA 99 (286)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCcc--HHhhcCcH--HHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHc
Confidence 4455554 445577788876666321 11111111 011335555555555 8999875333 57888999999
Q ss_pred CCCEEE--eCCCCCch-------hHHHHHHhcCCCC----cEE--E------e---cCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 114 GIDYVD--ESEVLTPA-------DEENHINKHNFRI----PFV--C------G---CRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 114 Gad~Vi--~~~~~~~~-------~~~~~i~~~~~~i----~~~--v------~---~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
|.+-|- .+. ++.+ ++.++....+..+ -.+ . + -++++++.+-. +.|+|.+.+.-.
T Consensus 100 GftSVM~DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiG 178 (286)
T PRK08610 100 GFTSVMIDASH-SPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALG 178 (286)
T ss_pred CCCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeecc
Confidence 999993 443 3322 3334433322110 000 0 0 25778888755 458888765421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+--| .++ ....-+++.++++++..++|+++=.+.|+ ..+++.++...|..=
T Consensus 179 t~HG-----------------~Y~-----------~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~-~~e~~~~ai~~GI~K 229 (286)
T PRK08610 179 SVHG-----------------PYK-----------GEPKLGFKEMEEIGLSTGLPLVLHGGTGI-PTKDIQKAIPFGTAK 229 (286)
T ss_pred cccc-----------------ccC-----------CCCCCCHHHHHHHHHHHCCCEEEeCCCCC-CHHHHHHHHHCCCeE
Confidence 1101 010 01233588899998888999885455666 358899999999999
Q ss_pred EEEccccccCCCHHHHHHHHHHHHh
Q 021609 249 VFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 249 V~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
|=++|.+-. ...+.+.+.++
T Consensus 230 iNi~T~l~~-----a~~~~~~~~~~ 249 (286)
T PRK08610 230 INVNTENQI-----ASAKAVRDVLN 249 (286)
T ss_pred EEeccHHHH-----HHHHHHHHHHH
Confidence 999998874 33444555443
No 325
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.39 E-value=0.036 Score=49.85 Aligned_cols=70 Identities=31% Similarity=0.437 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCC-CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 43 VTPEQARVAEEAGACAVMALERVPADIRSQGGVAR-MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 43 ~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~-~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.|+..|+++++.|++.+.-+- ..+ |+.. ..+++.++.+++..++||++..+++.-+++..+.+.|+|+|+
T Consensus 132 dd~~~ar~l~~~G~~~vmPlg---~pI----Gsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVl 202 (248)
T cd04728 132 DDPVLAKRLEDAGCAAVMPLG---SPI----GSGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVL 202 (248)
T ss_pred CCHHHHHHHHHcCCCEeCCCC---cCC----CCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 568999999999999873221 112 2222 446899999998889999999988888999999999999997
No 326
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.38 E-value=0.039 Score=49.72 Aligned_cols=72 Identities=33% Similarity=0.365 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEe
Q 021609 43 VTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120 (310)
Q Consensus 43 ~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~ 120 (310)
.|+..++++++.|++.+.-+. .-+..+. -..+++.++.+++..++||++..+++.-+++..+.+.|+|+|+.
T Consensus 132 ~d~~~ak~l~~~G~~~vmPlg---~pIGsg~---gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV 203 (250)
T PRK00208 132 DDPVLAKRLEEAGCAAVMPLG---APIGSGL---GLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (250)
T ss_pred CCHHHHHHHHHcCCCEeCCCC---cCCCCCC---CCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 567999999999999873221 1122111 13458899999988899999999888889999999999999973
No 327
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=96.36 E-value=0.028 Score=50.09 Aligned_cols=39 Identities=36% Similarity=0.519 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHHHH
Q 021609 229 AGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 229 ~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
.||+. .....+.. ..|+|.++|||+|++++||...++++
T Consensus 187 ~~~~~-~~~~~~~~~~~g~d~iiVGR~I~~a~dp~~aa~~i 226 (226)
T PF00215_consen 187 AGGQK-RATTPAAAKQAGADIIIVGRAITKAEDPREAAEEI 226 (226)
T ss_dssp CSSHH-CHHHHHHHHHTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred ccccc-ccccHHHHHhcCCEEEEEChHHhCCCCHHHHHhcC
Confidence 34443 34344444 47999999999999999999988864
No 328
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=96.35 E-value=0.2 Score=44.25 Aligned_cols=150 Identities=18% Similarity=0.237 Sum_probs=85.4
Q ss_pred Ccceeecccc-----CcHHHHHHHHHcCCCEEEe-C-----CC----------CCchhHHHHHHh-cCCCCcEEEecCCH
Q 021609 92 TIPVMAKARI-----GHFVEAQILEAIGIDYVDE-S-----EV----------LTPADEENHINK-HNFRIPFVCGCRNL 149 (310)
Q Consensus 92 ~iPv~vk~~~-----~~~~~a~~~~~aGad~Vi~-~-----~~----------~~~~~~~~~i~~-~~~~i~~~v~~~t~ 149 (310)
++||.....- ...++.+.+..+|..+|.. + |. +....-.++++. +..++....-+.++
T Consensus 87 ~tpv~aGv~~~DPf~~~~~~L~~L~~~gf~gV~NFPTv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~s~ 166 (276)
T COG5564 87 QTPVLAGVNGTDPFCRMVDFLKELKTAGFSGVQNFPTVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVFSF 166 (276)
T ss_pred cCcceecccCCCcchhHHHHHHHHHhcCCcccccCCeeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceecCH
Confidence 5677664221 1246668888899999841 0 11 112223455554 55566666677899
Q ss_pred HHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeC
Q 021609 150 GEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFA 228 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA 228 (310)
+||+.+.++|+|+|..| ||.-+|.+ ..-+..+.++..+.. ....+..+.+++- -+|+. -
T Consensus 167 ~eAqa~~~aGadiiv~hmg~ttgG~I--------------gar~~~Sl~~~vel~---~~~~~aar~v~kd-~i~l~--~ 226 (276)
T COG5564 167 EEAQAMTKAGADIIVAHMGLTTGGLI--------------GARSALSLADCVELI---ELAAEAARGVRKD-VIPLC--H 226 (276)
T ss_pred HHHHHHHHcCcceeeeccccccccee--------------ccccccCHHHHHHHH---HHHHHHHhhhhhc-eeeec--c
Confidence 99999999999999877 55433321 111222222111000 0001222222221 14554 4
Q ss_pred CCCCCCHHHHHHHHH--cCCCEEEEccccccCCCHHH
Q 021609 229 AGGVATPADAAMMMQ--LGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 229 ~GGI~t~~d~~~~l~--~GadgV~VGsai~~a~dp~~ 263 (310)
.|=|.+|+|..-.+. .||||..=+|.+-+ -|.+
T Consensus 227 GGPi~~p~da~yi~d~c~~~~gfygassmer--lp~e 261 (276)
T COG5564 227 GGPISMPEDARYILDRCPGCDGFYGASSMER--LPAE 261 (276)
T ss_pred CCCcCCchhhHHHHhhCCCCCcccccchhhc--cchH
Confidence 566999999988774 49999998887776 4543
No 329
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.35 E-value=0.17 Score=47.04 Aligned_cols=174 Identities=17% Similarity=0.220 Sum_probs=96.7
Q ss_pred ccCCCHHHHHHHHHcCCcEEEecc---------CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc--cCc----H
Q 021609 40 MDVVTPEQARVAEEAGACAVMALE---------RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR--IGH----F 104 (310)
Q Consensus 40 ~~~~~~~~A~~~~~~Ga~~i~~L~---------~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~--~~~----~ 104 (310)
..+-|.--|+.++++|++++ .+. ..| |. +-..+......+++|.+.+++||++..- ++. .
T Consensus 21 p~v~Da~SArl~e~aGf~ai-~~sg~~~~as~lG~p-D~---g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~ 95 (294)
T TIGR02319 21 PSAYDALSAKVIQQAGFPAV-HMTGSGTSASMLGLP-DL---GFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVW 95 (294)
T ss_pred ecCcCHHHHHHHHHcCCCEE-EecHHHHHHHHcCCC-Cc---CCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHH
Confidence 34556677899999999988 221 111 10 0000111235666677888999999632 221 3
Q ss_pred HHHHHHHHcCCCEEEeCCC--------------CCchhHHHHHHh-----cCCCCcEEEe--c---CCHHHH----HHHH
Q 021609 105 VEAQILEAIGIDYVDESEV--------------LTPADEENHINK-----HNFRIPFVCG--C---RNLGEA----LRRI 156 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~--------------~~~~~~~~~i~~-----~~~~i~~~v~--~---~t~~ea----~~~~ 156 (310)
..++.+.++|+.++.+-|. .+..+....++. ...++.+++- + ...+++ ....
T Consensus 96 r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~ 175 (294)
T TIGR02319 96 RATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYV 175 (294)
T ss_pred HHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHH
Confidence 4578999999999953221 233333333322 1123333332 1 123333 2334
Q ss_pred HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE-eCCCCCCCH
Q 021609 157 REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH-FAAGGVATP 235 (310)
Q Consensus 157 ~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~-iA~GGI~t~ 235 (310)
++|+|.|.+.+.. +.+.++.+.+..+.|++. +..||-.-.
T Consensus 176 eAGAD~ifi~~~~---------------------------------------~~~ei~~~~~~~~~P~~~nv~~~~~~p~ 216 (294)
T TIGR02319 176 AAGADCIFLEAML---------------------------------------DVEEMKRVRDEIDAPLLANMVEGGKTPW 216 (294)
T ss_pred HhCCCEEEecCCC---------------------------------------CHHHHHHHHHhcCCCeeEEEEecCCCCC
Confidence 6788888776421 123355555555667621 123443222
Q ss_pred HHHHHHHHcCCCEEEEcccccc
Q 021609 236 ADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 236 ~d~~~~l~~GadgV~VGsai~~ 257 (310)
-++.++.++|++-|..+..++.
T Consensus 217 ~s~~eL~~lG~~~v~~~~~~~~ 238 (294)
T TIGR02319 217 LTTKELESIGYNLAIYPLSGWM 238 (294)
T ss_pred CCHHHHHHcCCcEEEEcHHHHH
Confidence 4677778899999999988886
No 330
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.0018 Score=59.72 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=61.8
Q ss_pred HHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhc
Q 021609 211 DLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGL 288 (310)
Q Consensus 211 ~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~ 288 (310)
+.++.+... .+|||| .+|||+|..|+.+-+++||+-|.+++++.. +-| ...+++...+...++..++.++++.+
T Consensus 319 ~~vR~mY~lt~g~IpiI--G~GGV~SG~DA~EkiraGASlvQlyTal~y-eGp-~i~~kIk~El~~ll~~kG~t~v~d~i 394 (398)
T KOG1436|consen 319 NTVRAMYTLTRGKIPII--GCGGVSSGKDAYEKIRAGASLVQLYTALVY-EGP-AIIEKIKRELSALLKAKGFTSVDDAI 394 (398)
T ss_pred HHHHHHHHhccCCCceE--eecCccccHhHHHHHhcCchHHHHHHHHhh-cCc-hhHHHHHHHHHHHHHhcCCCcHHHhc
Confidence 344444433 579998 899999999999999999999999999998 333 46677888888888888888888887
Q ss_pred ccc
Q 021609 289 GEA 291 (310)
Q Consensus 289 ~~~ 291 (310)
|..
T Consensus 395 G~~ 397 (398)
T KOG1436|consen 395 GKD 397 (398)
T ss_pred cCC
Confidence 753
No 331
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.33 E-value=0.89 Score=42.16 Aligned_cols=194 Identities=15% Similarity=0.177 Sum_probs=112.7
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC--cceeeccccC-cHHHHHHHHHc
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT--IPVMAKARIG-HFVEAQILEAI 113 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~--iPv~vk~~~~-~~~~a~~~~~a 113 (310)
++.+.+. .+++++.++..|+++.+. ..+...|. ......++.+.+..+ +||.+.+--+ .++.+..+.++
T Consensus 24 N~~n~e~~~avi~AAe~~~sPvIiq~~~~--~~~~~~~~--~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~ 99 (285)
T PRK07709 24 NMNNLEWTQAILAAAEEEKSPVILGVSEG--AARHMTGF--KTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDA 99 (285)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCcc--hhhhcCCH--HHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHc
Confidence 4455654 445567788877676321 11110111 011235555555554 8999875433 56888999999
Q ss_pred CCCEEE--eCCCCCch-------hHHHHHHhcCCCCc----E--EE-------e--cCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 114 GIDYVD--ESEVLTPA-------DEENHINKHNFRIP----F--VC-------G--CRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 114 Gad~Vi--~~~~~~~~-------~~~~~i~~~~~~i~----~--~v-------~--~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
|.+-|- .+. ++.+ ++.++....+..+. . .. . .+++++|.+-. +.|+|.+.+.-.
T Consensus 100 GftSVM~DgS~-lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiG 178 (285)
T PRK07709 100 GFTSVMIDASH-HPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALG 178 (285)
T ss_pred CCCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeec
Confidence 999993 443 3322 33344433221110 0 00 0 35778888855 468888775421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+--| .++ ....-+++.++++++.+++|+++=.+.|+ ..+++.++.+.|..=
T Consensus 179 t~HG-----------------~Y~-----------~~p~L~~~~L~~I~~~~~iPLVLHGgSG~-~~e~~~~ai~~Gi~K 229 (285)
T PRK07709 179 SVHG-----------------PYK-----------GEPNLGFAEMEQVRDFTGVPLVLHGGTGI-PTADIEKAISLGTSK 229 (285)
T ss_pred cccc-----------------CcC-----------CCCccCHHHHHHHHHHHCCCEEEeCCCCC-CHHHHHHHHHcCCeE
Confidence 1101 010 01233578899998888999885456666 468999999999999
Q ss_pred EEEccccccCCCHHHHHHHHHHHHh
Q 021609 249 VFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 249 V~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
|=++|.+.. ...+.+.+.+.
T Consensus 230 iNi~T~l~~-----a~~~~~~~~~~ 249 (285)
T PRK07709 230 INVNTENQI-----EFTKAVREVLN 249 (285)
T ss_pred EEeChHHHH-----HHHHHHHHHHH
Confidence 999998874 33444544443
No 332
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=96.32 E-value=0.008 Score=52.13 Aligned_cols=57 Identities=25% Similarity=0.516 Sum_probs=49.8
Q ss_pred cCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 021609 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~ 264 (310)
.+++.+++..+.....-||+ .+|||+..+|+..+..+|++||+||+++.+-..|.+.
T Consensus 166 ~G~~~E~l~~~~~~s~~pVl--lGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~ 222 (229)
T COG1411 166 SGPDYELLTKVLELSEHPVL--LGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEV 222 (229)
T ss_pred cCCCHHHHHHHHHhccCcee--ecCCcCcHHHHHHHhcCCCceeeehhhhhcCcCcHHH
Confidence 35678888888887788998 5899999999999989999999999999998787654
No 333
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=96.30 E-value=0.005 Score=55.19 Aligned_cols=50 Identities=24% Similarity=0.541 Sum_probs=42.5
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
..++++++.+...+|+. ..|||++.+|+.+++..||+-|++||..++ ||.
T Consensus 61 n~~~i~~i~~~~~~~i~--vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~--~~~ 110 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQ--VGGGIRSIEDAERLLDAGADRVVIGTEALE--DPE 110 (229)
T ss_dssp HHHHHHHHHHHSSSEEE--EESSE-SHHHHHHHHHTT-SEEEESHHHHH--CCH
T ss_pred HHHHHHHHHhcCCccEE--EeCccCcHHHHHHHHHhCCCEEEeChHHhh--chh
Confidence 46788888887789998 589999999999999999999999999997 665
No 334
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.28 E-value=0.87 Score=42.19 Aligned_cols=182 Identities=15% Similarity=0.183 Sum_probs=107.9
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.+..-|+++.+. ..+. .|. ......++...+...+||.+.+--+ .++.+..+.++|.
T Consensus 24 Nv~n~e~~~avi~AAee~~sPvIlq~~~~--~~~~-~g~--~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~Gf 98 (284)
T PRK12857 24 NCNNMEIVQAIVAAAEAEKSPVIIQASQG--AIKY-AGI--EYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGF 98 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEechh--Hhhh-CCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 4455554 445567777766666321 1111 111 0012345556677899999875433 4678899999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCCCC----cEE---------E--e--cCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNFRI----PFV---------C--G--CRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~~i----~~~---------v--~--~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
+-|- ++. ++.+ ++.++....+..+ -.+ . + -++++++.+-. +.|+|.+.+.-.
T Consensus 99 tSVM~DgS~-lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiG 177 (284)
T PRK12857 99 TSVMIDGSK-LPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIG 177 (284)
T ss_pred CeEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccC
Confidence 9993 443 3322 3333333322100 000 0 0 34667777754 468887765421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+ -| ..++ ....-+++.++++++..++|++.=.+.|+ ..+++.++.+.|..=
T Consensus 178 t--~H---------------G~y~-----------~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~-~~e~~~~ai~~Gi~K 228 (284)
T PRK12857 178 T--AH---------------GPYK-----------GEPKLDFDRLAKIKELVNIPIVLHGSSGV-PDEAIRKAISLGVRK 228 (284)
T ss_pred c--cc---------------cccC-----------CCCcCCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHcCCeE
Confidence 1 11 0000 01233588999998888999876567787 479999999999999
Q ss_pred EEEcccccc
Q 021609 249 VFVGSGVFK 257 (310)
Q Consensus 249 V~VGsai~~ 257 (310)
|=++|.+..
T Consensus 229 iNi~T~~~~ 237 (284)
T PRK12857 229 VNIDTNIRE 237 (284)
T ss_pred EEeCcHHHH
Confidence 999998875
No 335
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.28 E-value=0.046 Score=49.15 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=42.4
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
...+.++++.+....|+- ..|||+|.+|+.+++..||+-|++||..++ ||.
T Consensus 60 ~n~~~i~~i~~~~~~~v~--vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~--~p~ 110 (232)
T PRK13586 60 NNEMYIKEISKIGFDWIQ--VGGGIRDIEKAKRLLSLDVNALVFSTIVFT--NFN 110 (232)
T ss_pred chHHHHHHHHhhCCCCEE--EeCCcCCHHHHHHHHHCCCCEEEECchhhC--CHH
Confidence 346778888773334888 589999999999999999999999999997 774
No 336
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=96.17 E-value=0.037 Score=48.36 Aligned_cols=169 Identities=21% Similarity=0.272 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC--cHHHHHHHHHcCCCEE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG--HFVEAQILEAIGIDYV 118 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~--~~~~a~~~~~aGad~V 118 (310)
+++++.|..+.+.|++.+ +.+.| .|.+..+++..+++.+.+. |..+..+.+ ..+..+.+.+.+.|.|
T Consensus 6 i~~~~da~~~~~~g~d~~Gfi~~~---------~S~R~v~~~~a~~l~~~~~-~~~VgVf~~~~~~~I~~~~~~~~ld~v 75 (197)
T PF00697_consen 6 ITRPEDARLAAELGADYLGFIFYP---------KSPRYVSPDQARELVSAVP-PKIVGVFVNQSPEEILEIVEELGLDVV 75 (197)
T ss_dssp --SHHHHHHHHHHTSSEEEEE--T---------TCTTB--HHHHHHHHCCSS-SSEEEEESSS-HHHHHHHHHHCTESEE
T ss_pred CCcHHHHHHHHHcCCCEEeeecCC---------CCCCccCHHHHHHHHHhcC-CCEEEEEcCCCHHHHHHHHHHcCCCEE
Confidence 578899999999999987 33311 1223345788888877665 324433333 2344577888999999
Q ss_pred EeCCCCCchhHHHHHHhcCCCCcEEEec-CCHHHHHHHHHh-CCCEEEEcCC-CCCcchHHHHHHHHhhccceEeecccC
Q 021609 119 DESEVLTPADEENHINKHNFRIPFVCGC-RNLGEALRRIRE-GAAMIRTKGE-AGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~~i~~~v~~-~t~~ea~~~~~~-Gad~V~v~g~-~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
-.+... +.+....++. ...+.-.+.+ .+.+....+... ..|++-+.+. +++|.
T Consensus 76 QLHG~e-~~e~~~~l~~-~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~~~GgtG~---------------------- 131 (197)
T PF00697_consen 76 QLHGDE-SPEYIKLLRA-GLPVIKAIHVDKDIDLLDYLERYESVDYFLLDSGSGGTGK---------------------- 131 (197)
T ss_dssp EE-SGG--HHHHHHHHT-TSEEEEEEEESSCHSCCHHCHCSTT-SEEEEESSSTSSSS----------------------
T ss_pred EECCCC-CHHHHHHhhc-CceEEEEEEeCCccchHHHHHhcccccEEeEccCCCcCCc----------------------
Confidence 433322 5555555542 2222212222 212112222222 2266666643 23442
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccC
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS 258 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a 258 (310)
.-+|++++.+.+. .+.|++ .+||| +++++.++++ .++.||=+.|.+=.+
T Consensus 132 -----------~~dw~~~~~~~~~~~~~p~i--LAGGl-~p~NV~~ai~~~~p~gvDvsSGvE~~ 182 (197)
T PF00697_consen 132 -----------TFDWSLLKKIVESYSPKPVI--LAGGL-NPENVREAIRQVRPYGVDVSSGVETS 182 (197)
T ss_dssp --------------GGGGCCCHHT-GTSTEE--EESS---TTTHHHHHHHC--SEEEESGGGEEE
T ss_pred -----------ccCHHHhhhhhhhcccCcEE--EEcCC-ChHHHHHHHHhcCceEEEeCCccccC
Confidence 1123333334331 257998 46999 7999999997 899999999999875
No 337
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=96.10 E-value=0.98 Score=40.48 Aligned_cols=185 Identities=20% Similarity=0.182 Sum_probs=103.6
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--Ccceeec--cccC-c---HHHHHHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAK--ARIG-H---FVEAQIL 110 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk--~~~~-~---~~~a~~~ 110 (310)
..++.+.+.|..+.++|+|.| ++ ++.. .|+--...+..+++|++.+ ..|++.- +... . ...+...
T Consensus 4 LvSv~~~~EA~~a~~~gaDiI-D~----K~P~--~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~ 76 (235)
T PF04476_consen 4 LVSVRNVEEAEEALAGGADII-DL----KNPA--EGALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGA 76 (235)
T ss_pred eecCCCHHHHHHHHhCCCCEE-Ec----cCCC--CCCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 567888999999999999965 87 2222 2332234578888888776 3788774 2221 1 1222334
Q ss_pred HHcCCCEE-EeCCCC-CchhHH-------HHHHhcCCCCc-EEEecCC--------HHHHH-HHHHhCCCEEEEcCCCCC
Q 021609 111 EAIGIDYV-DESEVL-TPADEE-------NHINKHNFRIP-FVCGCRN--------LGEAL-RRIREGAAMIRTKGEAGT 171 (310)
Q Consensus 111 ~~aGad~V-i~~~~~-~~~~~~-------~~i~~~~~~i~-~~v~~~t--------~~ea~-~~~~~Gad~V~v~g~~~~ 171 (310)
...|+|+| ++-... ...+.. +.++....+.. +.+.-.+ +-+.. .+.++|++.+.+......
T Consensus 77 a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kd 156 (235)
T PF04476_consen 77 AATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKD 156 (235)
T ss_pred HhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCC
Confidence 45899999 533221 222222 22322222322 2222112 22332 356789998887655433
Q ss_pred cchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 172 GNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 172 ~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
+. +.+..++.+++ .+++...++. .+-+- .+|-+ ..+|+..+...++|.+-+
T Consensus 157 g~---------------~L~d~~~~~~L----------~~Fv~~ar~~-gL~~a--LAGSL-~~~di~~L~~l~pD~lGf 207 (235)
T PF04476_consen 157 GG---------------SLFDHLSEEEL----------AEFVAQARAH-GLMCA--LAGSL-RFEDIPRLKRLGPDILGF 207 (235)
T ss_pred CC---------------chhhcCCHHHH----------HHHHHHHHHc-cchhh--ccccC-ChhHHHHHHhcCCCEEEe
Confidence 32 12222222211 2345545543 33332 35777 599999999999999999
Q ss_pred ccccccCC
Q 021609 252 GSGVFKSG 259 (310)
Q Consensus 252 Gsai~~a~ 259 (310)
=+++....
T Consensus 208 RGAvC~gg 215 (235)
T PF04476_consen 208 RGAVCGGG 215 (235)
T ss_pred chhhCCCC
Confidence 99988763
No 338
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.10 E-value=0.038 Score=55.62 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=42.1
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCH-----------HHHHHHHHcCCCEEEEccccccC
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATP-----------ADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~-----------~d~~~~l~~GadgV~VGsai~~a 258 (310)
++.++++.+...+|+- ..|||++. +++.+++.+|||-|++||+.++.
T Consensus 303 ~~~i~~i~~~~~ip~~--vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~ 360 (538)
T PLN02617 303 LEVLRRASENVFVPLT--VGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYA 360 (538)
T ss_pred HHHHHHHHhhCCCCEE--EcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhC
Confidence 7788889888889998 68999997 66999999999999999999973
No 339
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=96.08 E-value=0.36 Score=43.80 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=57.9
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHH-HH--hhcCcceeeccccCcHHHHHHHHH
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKE-IK--QSVTIPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~-i~--~~~~iPv~vk~~~~~~~~a~~~~~ 112 (310)
|.+....++..++.+...|+|.+ +|++..+. +.+.+.. ++ +..+.++++.........++.+.+
T Consensus 15 g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~------------~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld 82 (249)
T TIGR02311 15 GLWLGLADPYAAEICAGAGFDWLLIDGEHAPN------------DVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLD 82 (249)
T ss_pred EEEEeCCCcHHHHHHHhcCCCEEEEeccCCCC------------CHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhC
Confidence 45667788899999999999998 57642221 1222222 22 234556666654444457889999
Q ss_pred cCCCEEEeCCCCCchhHHHHHHh
Q 021609 113 IGIDYVDESEVLTPADEENHINK 135 (310)
Q Consensus 113 aGad~Vi~~~~~~~~~~~~~i~~ 135 (310)
.|+++|+.+...++++..+.++.
T Consensus 83 ~Ga~gIivP~v~s~e~a~~~v~~ 105 (249)
T TIGR02311 83 IGAQTLLVPMIETAEQAEAAVAA 105 (249)
T ss_pred CCCCEEEecCcCCHHHHHHHHHH
Confidence 99999998877777766666554
No 340
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=96.05 E-value=0.026 Score=62.11 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=72.3
Q ss_pred cCCCEEE---eCCCCCchhHHHHHHh---cCCCCcEEEecC---CHHHHH-HHHHhCCCEEEEcCCC-CCcchHHHHHHH
Q 021609 113 IGIDYVD---ESEVLTPADEENHINK---HNFRIPFVCGCR---NLGEAL-RRIREGAAMIRTKGEA-GTGNIIEAVRHV 181 (310)
Q Consensus 113 aGad~Vi---~~~~~~~~~~~~~i~~---~~~~i~~~v~~~---t~~ea~-~~~~~Gad~V~v~g~~-~~~~~~~~~~~~ 181 (310)
-|.+.+. .++..+++++.+++.. ..++.++.+-.- ...+.. -++++|+|+|.+.|.. +|+...
T Consensus 964 ~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap------ 1037 (1485)
T PRK11750 964 PGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASP------ 1037 (1485)
T ss_pred CCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCccccc------
Confidence 4777764 2233467777666544 334455554421 222222 2457899999999874 455310
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHH-HH----HHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDL-VM----QTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~-i~----~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
.++ .+..+.|+++ +. .+.+. .++.++ ++||+.|+.|+.+++.+|||.+.+|+
T Consensus 1038 -----------~~~-------~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~--a~Ggl~t~~Dv~kA~aLGAd~~~~gt 1097 (1485)
T PRK11750 1038 -----------LTS-------VKYAGSPWELGLAETHQALVANGLRHKIRLQ--VDGGLKTGLDVIKAAILGAESFGFGT 1097 (1485)
T ss_pred -----------HHH-------HhhCCccHHHHHHHHHHHHHhcCCCcceEEE--EcCCcCCHHHHHHHHHcCCcccccch
Confidence 000 0123555443 32 22222 246665 89999999999999999999999998
Q ss_pred ccccC
Q 021609 254 GVFKS 258 (310)
Q Consensus 254 ai~~a 258 (310)
+.+-+
T Consensus 1098 ~~lia 1102 (1485)
T PRK11750 1098 GPMVA 1102 (1485)
T ss_pred HHHHH
Confidence 87644
No 341
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=96.03 E-value=0.036 Score=54.60 Aligned_cols=120 Identities=21% Similarity=0.285 Sum_probs=70.4
Q ss_pred cCCCEEE---eCCCCCchhHHHHHHh-cC--CCCcEEE---ecCCHHHHHH-HHHhCCCEEEEcCC-CCCcchHHHHHHH
Q 021609 113 IGIDYVD---ESEVLTPADEENHINK-HN--FRIPFVC---GCRNLGEALR-RIREGAAMIRTKGE-AGTGNIIEAVRHV 181 (310)
Q Consensus 113 aGad~Vi---~~~~~~~~~~~~~i~~-~~--~~i~~~v---~~~t~~ea~~-~~~~Gad~V~v~g~-~~~~~~~~~~~~~ 181 (310)
-|.+.+. ..+..+++++.+++.. +. ..-.+.+ +.+..+.+.. .+++++|+|.+.|. ++||..
T Consensus 271 pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAs------- 343 (485)
T COG0069 271 PGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGAS------- 343 (485)
T ss_pred CCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCC-------
Confidence 6777764 2344567777666655 22 2222332 2334444444 56889999999987 456631
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHH-H----HHHhhc-C-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDL-V----MQTKQL-G-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~-i----~~i~~~-~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
+...+ +..+.||++ + +.+.+. . +.+.+ +++||++|+.|+.+++.+|||.|-+|++
T Consensus 344 --------------P~~~~---~~~GiP~e~glae~~q~L~~~glRd~v~l-~~~Ggl~Tg~DVaka~aLGAd~v~~gTa 405 (485)
T COG0069 344 --------------PLTSI---DHAGIPWELGLAETHQTLVLNGLRDKVKL-IADGGLRTGADVAKAAALGADAVGFGTA 405 (485)
T ss_pred --------------cHhHh---hcCCchHHHHHHHHHHHHHHcCCcceeEE-EecCCccCHHHHHHHHHhCcchhhhchH
Confidence 11110 123444432 1 112221 1 22333 3899999999999999999999999987
Q ss_pred ccc
Q 021609 255 VFK 257 (310)
Q Consensus 255 i~~ 257 (310)
-+-
T Consensus 406 ~li 408 (485)
T COG0069 406 ALV 408 (485)
T ss_pred HHH
Confidence 654
No 342
>PRK01362 putative translaldolase; Provisional
Probab=96.03 E-value=0.92 Score=40.28 Aligned_cols=174 Identities=20% Similarity=0.173 Sum_probs=99.6
Q ss_pred cccCCCHHHHHHHHHcCC-cEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC----cHHHHHHHHHc
Q 021609 39 IMDVVTPEQARVAEEAGA-CAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG----HFVEAQILEAI 113 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga-~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~----~~~~a~~~~~a 113 (310)
+.|-.+.+..+.+.+.|. +++ --||. ..+.. |. ...+.++++++..+-||.+..... ..++++.+.+.
T Consensus 4 ~lDsA~~~ei~~~~~~~~i~Gv-TTNPs--ll~k~-g~---~~~~~~~~i~~~i~g~vs~qv~~~d~~~m~~~a~~l~~~ 76 (214)
T PRK01362 4 FIDTANVEEIKEANELGVLDGV-TTNPS--LIAKE-GR---DFEEVIKEICSIVDGPVSAEVIALDAEGMIKEGRELAKI 76 (214)
T ss_pred EEecCCHHHHHHHHhCCCcceE-cCCHH--HHHhc-CC---CHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHh
Confidence 345556777777777775 454 44432 22221 21 124677777776666666543322 24566777777
Q ss_pred CCCEEE-eCCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhccceEe
Q 021609 114 GIDYVD-ESEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 114 Gad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
+-+.++ ++...+=....+.+++. ++.+.+ .+-+.+.+..+.++|++||... |+..
T Consensus 77 ~~~i~iKIP~T~~G~~a~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~-------------------- 134 (214)
T PRK01362 77 APNVVVKIPMTPEGLKAVKALSKE--GIKTNVTLIFSANQALLAAKAGATYVSPFVGRLD-------------------- 134 (214)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHC--CCceEEeeecCHHHHHHHHhcCCcEEEeecchHh--------------------
Confidence 655555 44322222334444443 544433 3789999999999999999864 2210
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhhc-----CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-----~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.. ...+.+.++++.+. .+.-|+ ...++++.++.++..+|||.+-++-.+++
T Consensus 135 --d~-----------g~dg~~~i~~~~~~~~~~~~~tkil---aAS~r~~~~v~~~~~~G~d~iTi~~~vl~ 190 (214)
T PRK01362 135 --DI-----------GTDGMELIEDIREIYDNYGFDTEII---AASVRHPMHVLEAALAGADIATIPYKVIK 190 (214)
T ss_pred --hc-----------CCCHHHHHHHHHHHHHHcCCCcEEE---EeecCCHHHHHHHHHcCCCEEecCHHHHH
Confidence 00 11223333333221 134444 47889999999999999999987754443
No 343
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=96.02 E-value=1.2 Score=41.80 Aligned_cols=185 Identities=13% Similarity=0.103 Sum_probs=105.5
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccC-cHHHHHHHHHcC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIG-HFVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~-~~~~a~~~~~aG 114 (310)
++.+.++ .+++++.+..-|+++.+. ..+. .|. ......++.+.+... +||.+.+--+ .++.+..+.++|
T Consensus 23 N~~n~e~~~avi~AAe~~~sPvIlq~s~~--~~~~-~g~--~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~G 97 (307)
T PRK05835 23 NFVNFEMLNAIFEAGNEENSPLFIQASEG--AIKY-MGI--DMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAG 97 (307)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCcc--HHhh-CCh--HHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcC
Confidence 3445554 445566777766665321 1111 111 001234555556665 9999975433 578889999999
Q ss_pred CCEEE--eCCCCCc-------hhHHHHHHhcCCCC----cEE-----------Ee--cCCHHHHHHHH-HhCCCEEEEcC
Q 021609 115 IDYVD--ESEVLTP-------ADEENHINKHNFRI----PFV-----------CG--CRNLGEALRRI-REGAAMIRTKG 167 (310)
Q Consensus 115 ad~Vi--~~~~~~~-------~~~~~~i~~~~~~i----~~~-----------v~--~~t~~ea~~~~-~~Gad~V~v~g 167 (310)
.+-|- .+. ++. .++.++....+..+ -.+ .+ -+++++|.+-. +.|+|.+.+.-
T Consensus 98 ftSVM~DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvai 176 (307)
T PRK05835 98 FTSVMIDASH-HAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAI 176 (307)
T ss_pred CCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEcc
Confidence 99993 443 222 23334443332110 000 00 34567887755 46888877542
Q ss_pred CCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCH------------
Q 021609 168 EAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATP------------ 235 (310)
Q Consensus 168 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~------------ 235 (310)
.+ -| ..++..+ ...-+++.++++++.+++|+++=.+.|+..-
T Consensus 177 Gt--~H---------------G~Yk~~~---------~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~~ 230 (307)
T PRK05835 177 GT--SH---------------GAFKFKG---------EPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDL 230 (307)
T ss_pred Cc--cc---------------cccCCCC---------CCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhcccc
Confidence 11 11 0010000 1123588899998888999885445555321
Q ss_pred --------HHHHHHHHcCCCEEEEcccccc
Q 021609 236 --------ADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 236 --------~d~~~~l~~GadgV~VGsai~~ 257 (310)
+++.++...|..=|=+++.+..
T Consensus 231 ~~~~g~~~e~~~kai~~GI~KiNi~T~l~~ 260 (307)
T PRK05835 231 KGSKGVPFEFLQESVKGGINKVNTDTDLRI 260 (307)
T ss_pred ccccCCCHHHHHHHHHcCceEEEeChHHHH
Confidence 3899999999999999998874
No 344
>PLN02979 glycolate oxidase
Probab=96.01 E-value=0.063 Score=51.21 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=62.8
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC------CCCc--hhHHHHHHh-cCCCCcEEEe--cCCH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE------VLTP--ADEENHINK-HNFRIPFVCG--CRNL 149 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~------~~~~--~~~~~~i~~-~~~~i~~~v~--~~t~ 149 (310)
-+.++.+++.+++||++|... ..++++.+.++|+|+|+.+. +..+ .+....+.+ .+..++++++ +.+.
T Consensus 212 W~dl~wlr~~~~~PvivKgV~-~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G 290 (366)
T PLN02979 212 WKDVQWLQTITKLPILVKGVL-TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRG 290 (366)
T ss_pred HHHHHHHHhccCCCEEeecCC-CHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcH
Confidence 378888999999999999874 46889999999999996321 1112 222222222 2334777776 8999
Q ss_pred HHHHHHHHhCCCEEEEcC
Q 021609 150 GEALRRIREGAAMIRTKG 167 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~g 167 (310)
.|+.++..+|++.+.+..
T Consensus 291 ~Di~KALALGAdaV~iGr 308 (366)
T PLN02979 291 TDVFKALALGASGIFIGR 308 (366)
T ss_pred HHHHHHHHcCCCEEEEcH
Confidence 999999999999998753
No 345
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.05 Score=48.38 Aligned_cols=77 Identities=31% Similarity=0.392 Sum_probs=60.6
Q ss_pred Ccc--cccCC-CHHHHHHHHHcCCcEEEeccCCcccccccCCCCC-CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHH
Q 021609 36 GGV--IMDVV-TPEQARVAEEAGACAVMALERVPADIRSQGGVAR-MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILE 111 (310)
Q Consensus 36 ~g~--i~~~~-~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~-~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~ 111 (310)
.|+ +.+++ |+-.|+++++.|+.+++-|. ..-||.+ ..++..++-+++..++||++.-.+|.-.++-.+.
T Consensus 129 eGF~VlPY~~dD~v~arrLee~GcaavMPl~-------aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aM 201 (262)
T COG2022 129 EGFVVLPYTTDDPVLARRLEEAGCAAVMPLG-------APIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAM 201 (262)
T ss_pred CCCEEeeccCCCHHHHHHHHhcCceEecccc-------ccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHH
Confidence 554 33443 57889999999999986662 2234444 5678899999998999999999888777888899
Q ss_pred HcCCCEEE
Q 021609 112 AIGIDYVD 119 (310)
Q Consensus 112 ~aGad~Vi 119 (310)
+.|+|.|+
T Consensus 202 ElG~DaVL 209 (262)
T COG2022 202 ELGADAVL 209 (262)
T ss_pred hcccceee
Confidence 99999997
No 346
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.00 E-value=0.11 Score=51.69 Aligned_cols=114 Identities=11% Similarity=0.125 Sum_probs=76.0
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEE---e
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVD---E 120 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi---~ 120 (310)
.+.++.+.++|++.| .++. .. |-. ....+.++.+++.+ ++|+++.. ....+.++.+.++|||+|- .
T Consensus 227 ~~ra~~Lv~aGVd~i-~~D~-----a~--g~~-~~~~~~i~~i~~~~~~~~vi~g~-~~t~~~~~~l~~~G~d~i~vg~g 296 (475)
T TIGR01303 227 GGKAKALLDAGVDVL-VIDT-----AH--GHQ-VKMISAIKAVRALDLGVPIVAGN-VVSAEGVRDLLEAGANIIKVGVG 296 (475)
T ss_pred HHHHHHHHHhCCCEE-EEeC-----CC--CCc-HHHHHHHHHHHHHCCCCeEEEec-cCCHHHHHHHHHhCCCEEEECCc
Confidence 478999999999987 4431 11 111 12257888888875 89999843 2356889999999999994 1
Q ss_pred C------CCC---Cch---hHHHHHHh-cCCCCcEEEe--cCCHHHHHHHHHhCCCEEEEcCC
Q 021609 121 S------EVL---TPA---DEENHINK-HNFRIPFVCG--CRNLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 121 ~------~~~---~~~---~~~~~i~~-~~~~i~~~v~--~~t~~ea~~~~~~Gad~V~v~g~ 168 (310)
+ ... ..+ .+.+..+. ...+++++++ +++..++.++..+|++.|.+.+.
T Consensus 297 ~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~vm~g~~ 359 (475)
T TIGR01303 297 PGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNVMVGSW 359 (475)
T ss_pred CCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEeechh
Confidence 1 111 111 12222211 2347788886 89999999999999999988654
No 347
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.99 E-value=0.28 Score=42.54 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=78.7
Q ss_pred HHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEE-EecCCHHHHHHHHHh
Q 021609 82 QLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFV-CGCRNLGEALRRIRE 158 (310)
Q Consensus 82 ~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~-v~~~t~~ea~~~~~~ 158 (310)
+.++++.+.-=+||+...... ..+.++.+.+.|++.+- .....+..++.+.+++....+... ..+.+.+++..+.++
T Consensus 4 ~~~~~l~~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~ 83 (187)
T PRK07455 4 DWLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAA 83 (187)
T ss_pred HHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHc
Confidence 455566554445665443322 23567888899999994 444455667777666543333233 345667899999999
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHH
Q 021609 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADA 238 (310)
Q Consensus 159 Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~ 238 (310)
|+|++.+- ... .+.++ .++..+++.+ + | +.|++++
T Consensus 84 gAdgv~~p-~~~---------------------------------------~~~~~-~~~~~~~~~i-~--G-~~t~~e~ 118 (187)
T PRK07455 84 GAQFCFTP-HVD---------------------------------------PELIE-AAVAQDIPII-P--G-ALTPTEI 118 (187)
T ss_pred CCCEEECC-CCC---------------------------------------HHHHH-HHHHcCCCEE-c--C-cCCHHHH
Confidence 99998542 110 11111 2222345654 3 4 9999999
Q ss_pred HHHHHcCCCEEEE
Q 021609 239 AMMMQLGCDGVFV 251 (310)
Q Consensus 239 ~~~l~~GadgV~V 251 (310)
.++.+.|+|.+-+
T Consensus 119 ~~A~~~Gadyv~~ 131 (187)
T PRK07455 119 VTAWQAGASCVKV 131 (187)
T ss_pred HHHHHCCCCEEEE
Confidence 9999999999987
No 348
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.98 E-value=0.067 Score=47.25 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.+.++.+++..++||+ .-++|.++.++..++++|||+|.++...+. + ...+++.+..
T Consensus 61 ~~~~~~i~~~v~iPi~--~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~---~-~~~~~~~~~~ 117 (217)
T cd00331 61 LEDLRAVREAVSLPVL--RKDFIIDPYQIYEARAAGADAVLLIVAALD---D-EQLKELYELA 117 (217)
T ss_pred HHHHHHHHHhcCCCEE--ECCeecCHHHHHHHHHcCCCEEEEeeccCC---H-HHHHHHHHHH
Confidence 4566777776789998 457888888999999999999999988874 3 4445555443
No 349
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.96 E-value=0.3 Score=43.02 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCCEEEeC-CCCCchhHHHHHHh-cCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHH
Q 021609 104 FVEAQILEAIGIDYVDES-EVLTPADEENHINK-HNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~~-~~~~~~~~~~~i~~-~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~ 180 (310)
.+.++.+.+.|+..+-.+ ......+..+.+.+ ++..+.++++ +.+.+++..+.++|++++.+-+.
T Consensus 25 ~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~------------ 92 (206)
T PRK09140 25 LAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT------------ 92 (206)
T ss_pred HHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC------------
Confidence 355788889999998433 22333344444444 3334677775 77889999999999999864211
Q ss_pred HHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
+.+..+... ..+.|++ =|+.|++++.++.+.|+|.+.+
T Consensus 93 ----------------------------~~~v~~~~~-~~~~~~~----~G~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 93 ----------------------------DPEVIRRAV-ALGMVVM----PGVATPTEAFAALRAGAQALKL 130 (206)
T ss_pred ----------------------------CHHHHHHHH-HCCCcEE----cccCCHHHHHHHHHcCCCEEEE
Confidence 112222222 2456765 2588999999999999999985
No 350
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.92 E-value=0.36 Score=44.86 Aligned_cols=73 Identities=25% Similarity=0.342 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHcCCcEEEecc--------CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc------HHHH
Q 021609 42 VVTPEQARVAEEAGACAVMALE--------RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH------FVEA 107 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~--------~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~------~~~a 107 (310)
+-|.=-|+.++++|++++ ... ..| |. +-..+......+++|.+.+++||++..--|+ ...+
T Consensus 22 ~~D~lSAri~e~aGf~ai-~~ss~~va~slG~p-D~---g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV 96 (290)
T TIGR02321 22 AHNPLVAKLAEQAGFGGI-WGSGFELSASYAVP-DA---NILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVV 96 (290)
T ss_pred ccCHHHHHHHHHcCCCEE-EECHHHHHHHCCCC-Cc---ccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHH
Confidence 345567888999999988 221 111 10 0000111235666677889999999632221 3557
Q ss_pred HHHHHcCCCEEE
Q 021609 108 QILEAIGIDYVD 119 (310)
Q Consensus 108 ~~~~~aGad~Vi 119 (310)
+.++++|+.++.
T Consensus 97 ~~~~~aGvagi~ 108 (290)
T TIGR02321 97 PQYEAAGASAIV 108 (290)
T ss_pred HHHHHcCCeEEE
Confidence 889999999995
No 351
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=95.90 E-value=0.074 Score=50.97 Aligned_cols=45 Identities=27% Similarity=0.452 Sum_probs=39.7
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
...|+.++++++..++||++ .||.+++|+.++.++|+|+|.|+..
T Consensus 210 ~~tW~di~wlr~~~~~Piiv---KgV~~~~dA~~a~~~Gvd~I~Vsnh 254 (367)
T PLN02493 210 TLSWKDVQWLQTITKLPILV---KGVLTGEDARIAIQAGAAGIIVSNH 254 (367)
T ss_pred CCCHHHHHHHHhccCCCEEe---ecCCCHHHHHHHHHcCCCEEEECCC
Confidence 34588899999989999983 8999999999999999999999754
No 352
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=95.88 E-value=0.17 Score=46.05 Aligned_cols=42 Identities=31% Similarity=0.516 Sum_probs=32.7
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHH
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~a 265 (310)
++||+ -+|+| +++++.+++ ..++||++||++-++++++....
T Consensus 203 ~~~Il--YGGSV-~~~N~~~l~~~~~vDG~LVG~Asl~~~~f~~ii 245 (250)
T PRK00042 203 KVRIL--YGGSV-KPDNAAELMAQPDIDGALVGGASLKAEDFLAIV 245 (250)
T ss_pred CceEE--EcCCC-CHHHHHHHhcCCCCCEEEEeeeeechHHHHHHH
Confidence 47888 47888 578877776 67999999999999866655443
No 353
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.86 E-value=0.16 Score=46.12 Aligned_cols=88 Identities=9% Similarity=0.211 Sum_probs=63.5
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc-cC-------Ch
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH-YS-------DP 278 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~-~~-------~~ 278 (310)
+..++.++.+++.+++||+ .-..|-++.++.++..+|||+|++--+++. +. ..+++.+..++ ++ ++
T Consensus 88 ~Gs~~~l~~v~~~v~~PvL--~KDFIid~~QI~ea~~~GADavLLI~~~L~---~~-~l~~l~~~a~~lGle~LVEVh~~ 161 (247)
T PRK13957 88 GGSLEDLKSVSSELKIPVL--RKDFILDEIQIREARAFGASAILLIVRILT---PS-QIKSFLKHASSLGMDVLVEVHTE 161 (247)
T ss_pred CCCHHHHHHHHHhcCCCEE--eccccCCHHHHHHHHHcCCCEEEeEHhhCC---HH-HHHHHHHHHHHcCCceEEEECCH
Confidence 3456778888888899999 689999999999999999999999888884 33 33444444433 22 22
Q ss_pred hhhhhhhhhcccchhcccCccch
Q 021609 279 EVLAEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~ 301 (310)
+.+ +.....|..+.|+|-+|++
T Consensus 162 ~El-~~a~~~ga~iiGINnRdL~ 183 (247)
T PRK13957 162 DEA-KLALDCGAEIIGINTRDLD 183 (247)
T ss_pred HHH-HHHHhCCCCEEEEeCCCCc
Confidence 322 2345568899999988765
No 354
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=95.82 E-value=0.23 Score=43.84 Aligned_cols=149 Identities=23% Similarity=0.294 Sum_probs=80.3
Q ss_pred HHHHHHHHhhcCcceeecccc----C---cHHHHHHHHHcCCCEEEeCCC---CCchhHHHHHHh-cCCCCcEEEecCCH
Q 021609 81 PQLIKEIKQSVTIPVMAKARI----G---HFVEAQILEAIGIDYVDESEV---LTPADEENHINK-HNFRIPFVCGCRNL 149 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~----~---~~~~a~~~~~aGad~Vi~~~~---~~~~~~~~~i~~-~~~~i~~~v~~~t~ 149 (310)
+-.+..+++.+++++..+.-. | -.-.++.+.++|++.++.-+. +...++.+.++. ...++.+++++...
T Consensus 41 ~~~L~~~~~~~~i~vgAQn~~~~~~Ga~TGevS~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi~~v 120 (205)
T TIGR00419 41 FVDLPMIKREVEIPVYAQHVDAVLSGAHTGEISAEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCTNNV 120 (205)
T ss_pred HHHHHHHHHhcCceEEecccccccCCCccCcCCHHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEEHHH
Confidence 445555555555666665311 1 124578899999999973332 333334433333 45678888887555
Q ss_pred HHHHHHHHhCCCEEEEcC-C-CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh-cCCCCEEE
Q 021609 150 GEALRRIREGAAMIRTKG-E-AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ-LGRLPVVH 226 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~g-~-~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~-~~~iPVi~ 226 (310)
.+.+........+|..-+ | .+||... ++++. ......++...+ ..+++|+
T Consensus 121 ~~q~~~~~~~~~vIAYEPvWAIGtG~~a-------------------s~~~~-------~~v~~~ir~~~~~~~~~~Il- 173 (205)
T TIGR00419 121 LTTAAAAALEPDVVAVEPPELIGTGIPV-------------------SPAQP-------EVVHGSVRAVKEVNESVRVL- 173 (205)
T ss_pred HHHHHhhhhcCeEEEECCHHHhCCCCCC-------------------CHHHH-------HHHHHHHHhhhhhcCCceEE-
Confidence 443333233334454332 2 2333210 11110 000122322222 1357888
Q ss_pred eCCCCCCCHHHHHHHH-HcCCCEEEEccccccC
Q 021609 227 FAAGGVATPADAAMMM-QLGCDGVFVGSGVFKS 258 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a 258 (310)
-+|+| +++++.+++ ..++||++||++-+++
T Consensus 174 -YGGSV-~~~N~~~l~~~~~iDG~LvG~Asl~a 204 (205)
T TIGR00419 174 -CGAGI-STGEDAELAAQLGAEGVLLASGSLKA 204 (205)
T ss_pred -EeCCC-CHHHHHHHhcCCCCCEEEEeeeeecC
Confidence 47888 577777766 6799999999998863
No 355
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.70 E-value=0.11 Score=49.81 Aligned_cols=85 Identities=16% Similarity=0.094 Sum_probs=62.0
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC--C--C----CchhHHHHHHhcCCCCcEEEe--cCCHH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE--V--L----TPADEENHINKHNFRIPFVCG--CRNLG 150 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~--~--~----~~~~~~~~i~~~~~~i~~~v~--~~t~~ 150 (310)
.+.++.+++.++.|+++|.. ...++++.+.++|+|+|+.+. . + .+.+....+.+ ..+++++++ +++..
T Consensus 225 w~~i~~ir~~~~~pviiKgV-~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~-~~~~~vi~dGGIr~g~ 302 (361)
T cd04736 225 WQDLRWLRDLWPHKLLVKGI-VTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVA-ATYKPVLIDSGIRRGS 302 (361)
T ss_pred HHHHHHHHHhCCCCEEEecC-CCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHH-HhCCeEEEeCCCCCHH
Confidence 35888999999999999975 456899999999999996221 1 1 11222222222 134677776 89999
Q ss_pred HHHHHHHhCCCEEEEcC
Q 021609 151 EALRRIREGAAMIRTKG 167 (310)
Q Consensus 151 ea~~~~~~Gad~V~v~g 167 (310)
|+.++..+|++.|.+..
T Consensus 303 Dv~KALaLGA~aV~iGr 319 (361)
T cd04736 303 DIVKALALGANAVLLGR 319 (361)
T ss_pred HHHHHHHcCCCEEEECH
Confidence 99999999999998753
No 356
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.07 Score=51.33 Aligned_cols=126 Identities=21% Similarity=0.307 Sum_probs=80.4
Q ss_pred ecc-CCccccc--ccCCCCCCCCHHHHHHH----HhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHH
Q 021609 61 ALE-RVPADIR--SQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHI 133 (310)
Q Consensus 61 ~L~-~~~~~~~--~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i 133 (310)
++| .+|+... ..-|..++++++-+..| .+...+|+.+|.|+-.. .+
T Consensus 111 diN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s---------------------~e------ 163 (477)
T KOG2334|consen 111 DINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDS---------------------KE------ 163 (477)
T ss_pred cccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecCC---------------------cc------
Confidence 666 5665433 33366677777755544 55678999999885310 00
Q ss_pred HhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHH
Q 021609 134 NKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLV 213 (310)
Q Consensus 134 ~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i 213 (310)
.|.+-.++....|+..+.+|++..-+. + ......+.+
T Consensus 164 -------------dtL~lv~ri~~tgi~ai~vh~rt~d~r-------------------~-----------~~~~~~~~i 200 (477)
T KOG2334|consen 164 -------------DTLKLVKRICATGIAAITVHCRTRDER-------------------N-----------QEPATKDYI 200 (477)
T ss_pred -------------cHHHHHHHHHhcCCceEEEEeeccccC-------------------C-----------CCCCCHHHH
Confidence 122345556677888899998753221 0 112334556
Q ss_pred HHHhhcCC-CCEEEeCCCCCCC---HHHHHHHH-HcCCCEEEEccccccC
Q 021609 214 MQTKQLGR-LPVVHFAAGGVAT---PADAAMMM-QLGCDGVFVGSGVFKS 258 (310)
Q Consensus 214 ~~i~~~~~-iPVi~iA~GGI~t---~~d~~~~l-~~GadgV~VGsai~~a 258 (310)
+.+....+ +||+ +.||+.+ ..|+.... ..|+++|++.++....
T Consensus 201 ~~i~~~~~~V~vi--~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n 248 (477)
T KOG2334|consen 201 REIAQACQMVPVI--VNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESN 248 (477)
T ss_pred HHHHHHhccceEe--eccchhhHHhhhhHHHHHHHhccchhhhhHhhhcC
Confidence 66655544 9998 7899988 66777766 5799999999877663
No 357
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=95.63 E-value=0.059 Score=46.24 Aligned_cols=40 Identities=20% Similarity=0.420 Sum_probs=30.4
Q ss_pred HHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 211 ~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
..++++++..++|++ |+|=|.+.+|+.+++++||++|.-+
T Consensus 130 ~vi~~i~~~~~~PiI--AGGLI~~~e~v~~al~aGa~aVSTS 169 (175)
T PF04309_consen 130 KVIKKIREETNIPII--AGGLIRTKEDVEEALKAGADAVSTS 169 (175)
T ss_dssp HHHCCCCCCCSS-EE--EESS--SHHHHHHHCCTTCEEEEE-
T ss_pred HHHHHHHHhcCCCEE--eecccCCHHHHHHHHHcCCEEEEcC
Confidence 356666777789998 7888999999999999999999755
No 358
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=95.56 E-value=0.031 Score=51.04 Aligned_cols=45 Identities=22% Similarity=0.236 Sum_probs=39.9
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+.+.++++.+ .++||- .+|||++ +++.+++.+||+-|++||+.++
T Consensus 72 n~~~i~~i~~-~~~~vq--vGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 72 LAAALEALRA-YPGGLQ--VGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred cHHHHHHHHh-CCCCEE--EeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 3667888887 778998 5899985 9999999999999999999997
No 359
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=95.56 E-value=0.096 Score=50.48 Aligned_cols=85 Identities=19% Similarity=0.105 Sum_probs=61.4
Q ss_pred HHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC--C--C----CchhHHHH-HHhcCCCCcEEEe--cCCHH
Q 021609 82 QLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE--V--L----TPADEENH-INKHNFRIPFVCG--CRNLG 150 (310)
Q Consensus 82 ~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~--~--~----~~~~~~~~-i~~~~~~i~~~v~--~~t~~ 150 (310)
+.++.+++.++.|+++|... ..++++.+.++|+|+|+.+. . + +..+.... .+..+.+++++++ +.+..
T Consensus 235 ~di~~lr~~~~~pvivKgV~-s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~ 313 (381)
T PRK11197 235 KDLEWIRDFWDGPMVIKGIL-DPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGL 313 (381)
T ss_pred HHHHHHHHhCCCCEEEEecC-CHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHH
Confidence 45888999999999999874 45789999999999996221 1 1 11222222 2223345777776 89999
Q ss_pred HHHHHHHhCCCEEEEcC
Q 021609 151 EALRRIREGAAMIRTKG 167 (310)
Q Consensus 151 ea~~~~~~Gad~V~v~g 167 (310)
++.++..+|++.|.+..
T Consensus 314 Di~KALaLGA~~V~iGr 330 (381)
T PRK11197 314 DVVRMIALGADTVLLGR 330 (381)
T ss_pred HHHHHHHcCcCceeEhH
Confidence 99999999999998753
No 360
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.49 E-value=0.22 Score=45.36 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=48.5
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc-CCc-cccccc--CCCCCCCCHHHHHHHHhhcCcc-eeeccccC-c-------HH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE-RVP-ADIRSQ--GGVARMSDPQLIKEIKQSVTIP-VMAKARIG-H-------FV 105 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~-~~~-~~~~~~--~G~~~~~~~~~i~~i~~~~~iP-v~vk~~~~-~-------~~ 105 (310)
+..+-|...|+.++++|++.+. .- ... ...... +...+......++.+++.++.| +++...++ + ..
T Consensus 16 ~~~ayD~~sA~l~e~aG~d~i~-vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~ 94 (254)
T cd06557 16 MLTAYDYPTAKLADEAGVDVIL-VGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALR 94 (254)
T ss_pred EEeCCCHHHHHHHHHcCCCEEE-ECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHH
Confidence 3444567789999999999873 21 000 000000 0011111134556667778899 55544333 2 12
Q ss_pred HH-HHHHHcCCCEEEeCCCCCchhHHHHHH
Q 021609 106 EA-QILEAIGIDYVDESEVLTPADEENHIN 134 (310)
Q Consensus 106 ~a-~~~~~aGad~Vi~~~~~~~~~~~~~i~ 134 (310)
.+ +.+.++||++|-+-+..+..+.++.+.
T Consensus 95 ~a~r~~~~aGa~aVkiEd~~~~~~~I~al~ 124 (254)
T cd06557 95 NAARLMKEAGADAVKLEGGAEVAETIRALV 124 (254)
T ss_pred HHHHHHHHhCCeEEEEcCcHHHHHHHHHHH
Confidence 23 445559999996444433334444443
No 361
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=95.46 E-value=2.8 Score=43.05 Aligned_cols=185 Identities=12% Similarity=0.099 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHH-HHHHHhhcC---c-ceeeccccCcHHHHHHHHHcCC
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQL-IKEIKQSVT---I-PVMAKARIGHFVEAQILEAIGI 115 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~-i~~i~~~~~---i-Pv~vk~~~~~~~~a~~~~~aGa 115 (310)
+++.+.++.+.+.|+|.+ +.+. ..|.+.-+++. .+++.+... + +|.+-......+..+.+.+.+.
T Consensus 10 it~~eda~~a~~~gaD~iGfIf~---------~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~l 80 (610)
T PRK13803 10 IKDSALISKAVDMLPDFIGFIFY---------EKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGI 80 (610)
T ss_pred CCcHHHHHHHHHcCCCEEEEEec---------CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCC
Confidence 678899999999999987 2221 11223334666 677765442 1 2222211122344567778999
Q ss_pred CEEEeCCCCC--chhHHHHHHhcCCCCcEEEecCCHHHHHHHHH--hCCCEEEEcCC----CCCcchHHHHHHHHhhccc
Q 021609 116 DYVDESEVLT--PADEENHINKHNFRIPFVCGCRNLGEALRRIR--EGAAMIRTKGE----AGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 116 d~Vi~~~~~~--~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~--~Gad~V~v~g~----~~~~~~~~~~~~~r~~~~~ 187 (310)
|.|-.+...+ ..+..+.+++....++-.+.+.+..+...+.+ .-+|++-+... +++|
T Consensus 81 d~vQLHG~e~~~~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG--------------- 145 (610)
T PRK13803 81 DFVQLHGAESKAEPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGSG--------------- 145 (610)
T ss_pred CEEEECCCCCcccHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEcCCCCCCCCCC---------------
Confidence 9994333333 13334444332222222222333222222221 13566655432 1222
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCC--EEEEccccccC---CCH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCD--GVFVGSGVFKS---GDP 261 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~Gad--gV~VGsai~~a---~dp 261 (310)
..-+|+.++.+. .+.|++ .+||| +++++.+++. .... ||=+.|.+=.+ +|+
T Consensus 146 ------------------~~fdw~~~~~~~--~~~p~i--LAGGL-~peNV~~ai~~~~p~~~gVDvsSGvE~~pG~KD~ 202 (610)
T PRK13803 146 ------------------KSFDWEKFYNYN--FKFPFF--LSGGL-SPTNFDRIINLTHPQILGIDVSSGFEDSPGNKKL 202 (610)
T ss_pred ------------------CccChHHhhhcc--cCCcEE--EEeCC-CHHHHHHHHhhhCCCceEEEccCcccCCCCCcCH
Confidence 122355544332 246887 46999 7999999996 5667 99999999743 476
Q ss_pred HHHHHHHHHHHhc
Q 021609 262 VKRAQAIVRAVTH 274 (310)
Q Consensus 262 ~~~a~~l~~~i~~ 274 (310)
.+ .++|++.++.
T Consensus 203 ~k-i~~fi~~~k~ 214 (610)
T PRK13803 203 TL-LKSFITNVKK 214 (610)
T ss_pred HH-HHHHHHHHHH
Confidence 54 4557777765
No 362
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=95.46 E-value=2.2 Score=40.25 Aligned_cols=200 Identities=12% Similarity=0.115 Sum_probs=109.2
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCC-CHHHHHHHHhhc--CcceeeccccC-cHHHHHHHHH
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMS-DPQLIKEIKQSV--TIPVMAKARIG-HFVEAQILEA 112 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~-~~~~i~~i~~~~--~iPv~vk~~~~-~~~~a~~~~~ 112 (310)
++.+.+. .+++++.++.-|+++.+. ..+ +.|..... ....+....+.. .+||.+.+--+ .++.+..+.+
T Consensus 30 N~~n~e~~~avi~AAee~~sPvIlq~s~~--~~~-~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~ 106 (321)
T PRK07084 30 NFNNMEQLQAIIQACVETKSPVILQVSKG--ARK-YANATLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCID 106 (321)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEechh--HHh-hCCchHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHH
Confidence 4445554 445566777766666311 111 11210000 112233334444 79999875433 5788899999
Q ss_pred cCCCEEE--eCCCCCch-------hHHHHHHhcCCCCc--E--E-----------EecCCHHHHHHHH-HhCCCEEEEcC
Q 021609 113 IGIDYVD--ESEVLTPA-------DEENHINKHNFRIP--F--V-----------CGCRNLGEALRRI-REGAAMIRTKG 167 (310)
Q Consensus 113 aGad~Vi--~~~~~~~~-------~~~~~i~~~~~~i~--~--~-----------v~~~t~~ea~~~~-~~Gad~V~v~g 167 (310)
+|.+-|- .+. ++.. ++.++....+..+. + + ..-+++++|.+-. +.|+|.+.+.-
T Consensus 107 ~GftSVMiD~S~-lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvai 185 (321)
T PRK07084 107 SGFSSVMIDGSH-LPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISI 185 (321)
T ss_pred cCCCEEEeeCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeecc
Confidence 9999993 333 3322 33344433221100 0 0 0034678888865 46888877542
Q ss_pred CCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCC----------------
Q 021609 168 EAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAG---------------- 230 (310)
Q Consensus 168 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~G---------------- 230 (310)
.+--| .++. .+.. -...-+++.++++++.. ++|++.=.+.
T Consensus 186 Gt~HG-----------------~Y~~-~~~~-----~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 186 GTSHG-----------------AYKF-KPGQ-----CPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred ccccc-----------------cccC-CCCC-----CCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 11100 0000 0000 01123588999998887 6998753333
Q ss_pred -----CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 231 -----GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 231 -----GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
|+ ..+++.++++.|..=|=++|.+.. ...+.+.+.+.
T Consensus 243 ~~~~~Gi-~~e~~~kai~~GI~KINi~Tdl~~-----a~~~~~~~~l~ 284 (321)
T PRK07084 243 LKDAIGI-PEEQLRKAAKSAVCKINIDSDGRL-----AMTAAIRKVFD 284 (321)
T ss_pred cccCCCC-CHHHHHHHHHcCCceeccchHHHH-----HHHHHHHHHHH
Confidence 55 469999999999999999998874 34444555443
No 363
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.40 E-value=2.3 Score=39.63 Aligned_cols=183 Identities=16% Similarity=0.158 Sum_probs=91.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHH----HHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQ----LIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGI 115 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~----~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGa 115 (310)
+.++.+.+.|.++|+.+. . .|.....+.+ .++.+++.+ .+|+++...-.. .+.++.+.+.|+
T Consensus 29 ~lv~~li~~Gv~gi~~~G-------t-tGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Ga 100 (299)
T COG0329 29 RLVEFLIAAGVDGLVVLG-------T-TGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGA 100 (299)
T ss_pred HHHHHHHHcCCCEEEECC-------C-CccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCC
Confidence 567788999999985441 1 1111111222 334444544 589998765432 466788899999
Q ss_pred CEEE-eCCC---CCchhHHHHHHh--cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceE
Q 021609 116 DYVD-ESEV---LTPADEENHINK--HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIR 189 (310)
Q Consensus 116 d~Vi-~~~~---~~~~~~~~~i~~--~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~ 189 (310)
|+++ .+.. .+...+.++++. ...+++ ++.-+-+..++... ..+.+.++... .
T Consensus 101 d~il~v~PyY~k~~~~gl~~hf~~ia~a~~lP--------------------vilYN~P~~tg~~l-~~e~i~~la~~-~ 158 (299)
T COG0329 101 DGILVVPPYYNKPSQEGLYAHFKAIAEAVDLP--------------------VILYNIPSRTGVDL-SPETIARLAEH-P 158 (299)
T ss_pred CEEEEeCCCCcCCChHHHHHHHHHHHHhcCCC--------------------EEEEeCccccCCCC-CHHHHHHHhcC-C
Confidence 9996 4433 234444444433 111222 22222222222100 11111111110 0
Q ss_pred eecccChhHHHHhhhccCCcHHHHHHHhhcCCC-CEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 190 VLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRL-PVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~i-PVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
.+.. .|+...+...+.++...... ..+++ +|. -+.+...+.+|++|++.+.+-+ .|... .+|
T Consensus 159 nivg---------iKd~~gd~~~~~~~~~~~~~~~f~v~-~G~---d~~~~~~~~~G~~G~is~~~N~---~p~~~-~~l 221 (299)
T COG0329 159 NIVG---------VKDSSGDLDRLEEIIAALGDRDFIVL-SGD---DELALPALLLGADGVISVTANV---APELA-VEL 221 (299)
T ss_pred CEEE---------EEeCCcCHHHHHHHHHhcCccCeeEE-eCc---hHHHHHHHhCCCCeEEeccccc---CHHHH-HHH
Confidence 0000 02334456666665443322 34432 333 3555555669999999998777 36544 447
Q ss_pred HHHHhcc
Q 021609 269 VRAVTHY 275 (310)
Q Consensus 269 ~~~i~~~ 275 (310)
.+..+++
T Consensus 222 ~~~~~~g 228 (299)
T COG0329 222 YRAAKAG 228 (299)
T ss_pred HHHHHcC
Confidence 7776665
No 364
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=95.36 E-value=0.67 Score=46.30 Aligned_cols=84 Identities=19% Similarity=0.057 Sum_probs=51.6
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLT 125 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~ 125 (310)
+.|+.+.+.||+.| +++..++.. +.. .....++.+++.+++|+++... ..+.++.+.++|+|.|.-.....
T Consensus 169 ~~A~~~~~~GADII-DIG~~st~p----~~~--~v~~~V~~l~~~~~~pISIDT~--~~~v~eaAL~aGAdiINsVs~~~ 239 (499)
T TIGR00284 169 GLAARMERDGADMV-ALGTGSFDD----DPD--VVKEKVKTALDALDSPVIADTP--TLDELYEALKAGASGVIMPDVEN 239 (499)
T ss_pred HHHHHHHHCCCCEE-EECCCcCCC----cHH--HHHHHHHHHHhhCCCcEEEeCC--CHHHHHHHHHcCCCEEEECCccc
Confidence 67889999999965 886222111 000 0134666667667899987765 33778889999999985222223
Q ss_pred chhHHHHHHhcCC
Q 021609 126 PADEENHINKHNF 138 (310)
Q Consensus 126 ~~~~~~~i~~~~~ 138 (310)
..++...+.+++.
T Consensus 240 ~d~~~~l~a~~g~ 252 (499)
T TIGR00284 240 AVELASEKKLPED 252 (499)
T ss_pred hhHHHHHHHHcCC
Confidence 3345454544433
No 365
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=95.28 E-value=0.52 Score=43.50 Aligned_cols=121 Identities=18% Similarity=0.159 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeC---
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDES--- 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~--- 121 (310)
...|+.+++.|+|.| +-. ...+ +..+.+..++..+++|+++..+ ..+++....+.|+|.|-.+
T Consensus 86 ~~Ea~~L~~~GvDiI-D~T---e~lr--------pad~~~~~~K~~f~~~fmad~~--~l~EAlrai~~GadmI~Ttge~ 151 (293)
T PRK04180 86 FVEAQILEALGVDYI-DES---EVLT--------PADEEYHIDKWDFTVPFVCGAR--NLGEALRRIAEGAAMIRTKGEA 151 (293)
T ss_pred HHHHHHHHHcCCCEE-ecc---CCCC--------chHHHHHHHHHHcCCCEEccCC--CHHHHHHHHHCCCCeeeccCCC
Confidence 467889999999966 420 0011 1136777778889999998876 4578888999999999543
Q ss_pred ----------------------CCC-------------CchhHHHHHHhcCCCCcEE----EecCCHHHHHHHHHhCCCE
Q 021609 122 ----------------------EVL-------------TPADEENHINKHNFRIPFV----CGCRNLGEALRRIREGAAM 162 (310)
Q Consensus 122 ----------------------~~~-------------~~~~~~~~i~~~~~~i~~~----v~~~t~~ea~~~~~~Gad~ 162 (310)
... .+.++.+.+.+. ..+|++ -+++|++++..+.++|++.
T Consensus 152 gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~-~~iPVV~~AeGGI~TPedaa~vme~GAdg 230 (293)
T PRK04180 152 GTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAEL-GRLPVVNFAAGGIATPADAALMMQLGADG 230 (293)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHh-CCCCEEEEEeCCCCCHHHHHHHHHhCCCE
Confidence 001 122333444332 346654 3488999999999999999
Q ss_pred EEEcCCCC-CcchHHHHHH
Q 021609 163 IRTKGEAG-TGNIIEAVRH 180 (310)
Q Consensus 163 V~v~g~~~-~~~~~~~~~~ 180 (310)
|.+..... +.++.+..+.
T Consensus 231 VaVGSaI~ks~dP~~~aka 249 (293)
T PRK04180 231 VFVGSGIFKSGDPEKRARA 249 (293)
T ss_pred EEEcHHhhcCCCHHHHHHH
Confidence 98865432 3344433333
No 366
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.20 E-value=0.63 Score=43.15 Aligned_cols=176 Identities=16% Similarity=0.178 Sum_probs=92.7
Q ss_pred cCCCHHHHHHHHHc---------CCcEEEecc--------CCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc-C
Q 021609 41 DVVTPEQARVAEEA---------GACAVMALE--------RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI-G 102 (310)
Q Consensus 41 ~~~~~~~A~~~~~~---------Ga~~i~~L~--------~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~-~ 102 (310)
.+-|.--|+.++++ |++++ .+. ..| |. +-..+......++.|...+++||++..-. +
T Consensus 15 ~~~D~~SA~~~e~~~~~~~~~~~Gf~ai-~~ss~~~a~s~G~p-D~---~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg 89 (285)
T TIGR02320 15 EAHNGLSALIAEEARVEVGGESLGFDGI-WSSSLTDSTSRGVP-DI---EEASWTQRLDVVEFMFDVTTKPIILDGDTGG 89 (285)
T ss_pred cCcCHHHHHHHHHhhhcccCcCCCcCEE-EechHHHHHHCCCC-Cc---CcCCHHHHHHHHHHHHhhcCCCEEEecCCCC
Confidence 34455668888889 99987 221 111 00 00001111345556677789999985322 3
Q ss_pred c----HHHHHHHHHcCCCEEEeCC-----------------CCCchhHHHHHHh---c--CCCCcEEEe------cCCHH
Q 021609 103 H----FVEAQILEAIGIDYVDESE-----------------VLTPADEENHINK---H--NFRIPFVCG------CRNLG 150 (310)
Q Consensus 103 ~----~~~a~~~~~aGad~Vi~~~-----------------~~~~~~~~~~i~~---~--~~~i~~~v~------~~t~~ 150 (310)
. ...++.+.++|+.++.+-| .++..+..+.++. . +.++.+++- ....+
T Consensus 90 ~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~ 169 (285)
T TIGR02320 90 NFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGME 169 (285)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHH
Confidence 2 3457888999999995311 1234444443333 1 234555444 12333
Q ss_pred H----HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh-cCCCCEE
Q 021609 151 E----ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ-LGRLPVV 225 (310)
Q Consensus 151 e----a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~-~~~iPVi 225 (310)
+ +++..++|||.+.+.+... + .+++ ..+.+.+.. ..++|++
T Consensus 170 eAi~Ra~ay~eAGAD~ifv~~~~~--~----------------------~~ei----------~~~~~~~~~~~p~~pl~ 215 (285)
T TIGR02320 170 DALKRAEAYAEAGADGIMIHSRKK--D----------------------PDEI----------LEFARRFRNHYPRTPLV 215 (285)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCC--C----------------------HHHH----------HHHHHHhhhhCCCCCEE
Confidence 4 3344578999988763211 1 0111 112222221 1246887
Q ss_pred EeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 226 ~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+. .+ -...-++.++.++|+.-|..|..+++
T Consensus 216 ~~-~~-~~~~~~~~eL~~lG~~~v~~~~~~~~ 245 (285)
T TIGR02320 216 IV-PT-SYYTTPTDEFRDAGISVVIYANHLLR 245 (285)
T ss_pred Ee-cC-CCCCCCHHHHHHcCCCEEEEhHHHHH
Confidence 43 22 11112466667899999999988885
No 367
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=95.20 E-value=0.92 Score=42.12 Aligned_cols=190 Identities=14% Similarity=0.175 Sum_probs=109.2
Q ss_pred HHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE--eCCC
Q 021609 47 QARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD--ESEV 123 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi--~~~~ 123 (310)
..+++++.+...|+++.+. ..+..+ . ......++.+.+..++||.+.+--+ ..+.++.+.++|.+-|- .+.
T Consensus 33 vi~AAe~~~sPvIlq~~~~--~~~~~~-~--~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS~- 106 (287)
T PF01116_consen 33 VIEAAEELNSPVILQISPS--EVKYMG-L--EYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGSA- 106 (287)
T ss_dssp HHHHHHHTTS-EEEEEEHH--HHHHHH-H--HHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-TT-
T ss_pred HHHHHHHhCCCEEEEcchh--hhhhhh-H--HHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCcccccccCCc-
Confidence 3456677888877666311 111111 0 0113466666777899999874322 46888999999999993 333
Q ss_pred CCch-------hHHHHHHhcCC------CCcE----EE--------ecCCHHHHHHHH-HhCCCEEEEcCCCCCcchHHH
Q 021609 124 LTPA-------DEENHINKHNF------RIPF----VC--------GCRNLGEALRRI-REGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 124 ~~~~-------~~~~~i~~~~~------~i~~----~v--------~~~t~~ea~~~~-~~Gad~V~v~g~~~~~~~~~~ 177 (310)
++.. ++.++.+..+. |..- .. -.++++++.+-. +.|+|.+.+.-...-|
T Consensus 107 l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG----- 181 (287)
T PF01116_consen 107 LPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHG----- 181 (287)
T ss_dssp S-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSS-----
T ss_pred CCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCcccc-----
Confidence 3322 33444443321 1000 00 024678888754 6799988765221101
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
.++. .+...-+++.++++++.. ++|++.=.+.|+ ..+++.++.+.|..=|=++|.+.
T Consensus 182 ------------~y~~---------~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~T~~~ 239 (287)
T PF01116_consen 182 ------------MYKG---------GKKPKLDFDRLKEIREAVPDIPLVLHGGSGL-PDEQIRKAIKNGISKINIGTELR 239 (287)
T ss_dssp ------------SBSS---------SSSTC--HHHHHHHHHHHHTSEEEESSCTTS--HHHHHHHHHTTEEEEEESHHHH
T ss_pred ------------ccCC---------CCCcccCHHHHHHHHHhcCCCCEEEECCCCC-CHHHHHHHHHcCceEEEEehHHH
Confidence 0000 001223588999999988 999985455666 46899999999999999999888
Q ss_pred cCCCHHHHHHHHHHHHhc
Q 021609 257 KSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 257 ~a~dp~~~a~~l~~~i~~ 274 (310)
. ...+.+.+.+++
T Consensus 240 ~-----a~~~~~~~~~~~ 252 (287)
T PF01116_consen 240 R-----AFTDALREYLAE 252 (287)
T ss_dssp H-----HHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHh
Confidence 4 334444444444
No 368
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=95.14 E-value=0.12 Score=45.46 Aligned_cols=65 Identities=23% Similarity=0.203 Sum_probs=50.6
Q ss_pred HHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 47 QARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.|.+.+..|++++ .|. ...|.....+++.++++++.+++|+.+...+...++++.+.++|||.|+
T Consensus 139 ~a~aa~~~G~~~i-~Le-------~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VV 203 (205)
T TIGR01769 139 YCLAAKYFGMKWV-YLE-------AGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIV 203 (205)
T ss_pred HHHHHHHcCCCEE-EEE-------cCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 4556677899987 552 1123333456899999999999999999888888999999999999985
No 369
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.11 E-value=0.2 Score=46.59 Aligned_cols=121 Identities=14% Similarity=0.072 Sum_probs=67.0
Q ss_pred HHHHHHHHcCCcEEEeccCC--cccccccCCCCCCCCHHHHHHHHhhc----CcceeeccccC------c---HHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERV--PADIRSQGGVARMSDPQLIKEIKQSV----TIPVMAKARIG------H---FVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~--~~~~~~~~G~~~~~~~~~i~~i~~~~----~iPv~vk~~~~------~---~~~a~~~ 110 (310)
..++.++++|+.+| .++.+ |+......|.......+.+++|+... +.++.+.-|.. . .+.++.+
T Consensus 96 r~V~~~~~aGaagi-~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY 174 (294)
T TIGR02319 96 RATREFERVGIVGY-HLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREY 174 (294)
T ss_pred HHHHHHHHcCCeEE-EEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHH
Confidence 46899999999997 77533 22111111222233345666664332 34566653332 1 3567888
Q ss_pred HHcCCCEEEeCCCCCchhHHHHHHhcCCCC-cEEEec-CCH-HHHHHHHHhCCCEEEEcC
Q 021609 111 EAIGIDYVDESEVLTPADEENHINKHNFRI-PFVCGC-RNL-GEALRRIREGAAMIRTKG 167 (310)
Q Consensus 111 ~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i-~~~v~~-~t~-~ea~~~~~~Gad~V~v~g 167 (310)
.++|||.|......++.++.+..+....-+ .+++.. .++ -....+.++|+++|....
T Consensus 175 ~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~ 234 (294)
T TIGR02319 175 VAAGADCIFLEAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYNLAIYPL 234 (294)
T ss_pred HHhCCCEEEecCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcH
Confidence 999999997655455666666655422112 122221 111 235556788999887653
No 370
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=95.08 E-value=0.082 Score=47.50 Aligned_cols=83 Identities=16% Similarity=0.214 Sum_probs=57.5
Q ss_pred cchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccCcHHH
Q 021609 28 VGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIGHFVE 106 (310)
Q Consensus 28 ~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~ 106 (310)
.|+...++-+. ......+.|++++++|+++| .++ .+..++ ...+.+.++++++.++ +||+.+..+...++
T Consensus 135 ~PVsvKiR~~~-~~~~~~~~a~~l~~aGad~i-~Vd-----~~~~g~--~~a~~~~I~~i~~~~~~ipIIgNGgI~s~ed 205 (231)
T TIGR00736 135 KPIFVKIRGNC-IPLDELIDALNLVDDGFDGI-HVD-----AMYPGK--PYADMDLLKILSEEFNDKIIIGNNSIDDIES 205 (231)
T ss_pred CcEEEEeCCCC-CcchHHHHHHHHHHcCCCEE-EEe-----eCCCCC--chhhHHHHHHHHHhcCCCcEEEECCcCCHHH
Confidence 35555444442 22334589999999999998 332 111111 0124688999999985 99999887777889
Q ss_pred HHHHHHcCCCEEE
Q 021609 107 AQILEAIGIDYVD 119 (310)
Q Consensus 107 a~~~~~aGad~Vi 119 (310)
+..+.+.|||+|-
T Consensus 206 a~e~l~~GAd~Vm 218 (231)
T TIGR00736 206 AKEMLKAGADFVS 218 (231)
T ss_pred HHHHHHhCCCeEE
Confidence 9888889999994
No 371
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.06 E-value=2.5 Score=40.39 Aligned_cols=174 Identities=14% Similarity=0.206 Sum_probs=99.3
Q ss_pred HHHHHHHHcCCcEEE-ec--cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeC
Q 021609 46 EQARVAEEAGACAVM-AL--ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~-~L--~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~ 121 (310)
+.|+.+.+.|+..+- .. ++.. ...|.|-. ..-++.++++++.+++|++.-.. +...++.+.+. +|.+ +.+
T Consensus 119 ~~A~~lk~~g~~~~r~g~~kpRts--p~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev~--d~~~v~~~~~~-~d~lqIga 192 (352)
T PRK13396 119 ETAKRVKAAGAKFLRGGAYKPRTS--PYAFQGHG-ESALELLAAAREATGLGIITEVM--DAADLEKIAEV-ADVIQVGA 192 (352)
T ss_pred HHHHHHHHcCCCEEEeeeecCCCC--CcccCCch-HHHHHHHHHHHHHcCCcEEEeeC--CHHHHHHHHhh-CCeEEECc
Confidence 468888888888651 11 1111 01111111 12256777888889999985443 33566777777 8988 566
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEe--cC-CHHHHHHHHH----hCCC-EEEEcCCCCCcchHHHHHHHHhhccceEeecc
Q 021609 122 EVLTPADEENHINKHNFRIPFVCG--CR-NLGEALRRIR----EGAA-MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~--~~-t~~ea~~~~~----~Gad-~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
..+...++.+.+.+ .+.++++. .. |.+|...+++ .|.. ++-.+-.. |-|.
T Consensus 193 ~~~~n~~LL~~va~--t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~-------------------rtf~- 250 (352)
T PRK13396 193 RNMQNFSLLKKVGA--QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGI-------------------RTFD- 250 (352)
T ss_pred ccccCHHHHHHHHc--cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCC-------------------ccCc-
Confidence 66667777666654 45666665 33 8888777654 3663 44444211 0010
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCC--CCC--CHHHHHHHHHcCCCEEEEccc
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAG--GVA--TPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~G--GI~--t~~d~~~~l~~GadgV~VGsa 254 (310)
+. |. ....++..+..+++..++||++-++= |-+ .+.-...+..+||||+++=.=
T Consensus 251 -s~-----y~-~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H 308 (352)
T PRK13396 251 -RQ-----YT-RNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVH 308 (352)
T ss_pred -CC-----CC-CCCcCHHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEec
Confidence 00 00 12345667777887778999864443 322 223344555789999997643
No 372
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=95.05 E-value=0.11 Score=48.60 Aligned_cols=85 Identities=29% Similarity=0.355 Sum_probs=61.4
Q ss_pred chhhhhhC-c--ccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCC-CCCCHHHHHHHHhhcCcceeeccccCcH
Q 021609 29 GLAQMLRG-G--VIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVA-RMSDPQLIKEIKQSVTIPVMAKARIGHF 104 (310)
Q Consensus 29 ~~~~~~~~-g--~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~-~~~~~~~i~~i~~~~~iPv~vk~~~~~~ 104 (310)
+.+++++. | ++..+++.+.++.++++|+|.|+ +.. +..+|.. ...+...+.++++.+++||++...+...
T Consensus 100 ~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Iv-v~g-----~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~ 173 (307)
T TIGR03151 100 KYIPRLKENGVKVIPVVASVALAKRMEKAGADAVI-AEG-----MESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADG 173 (307)
T ss_pred HHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEE-EEC-----cccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCH
Confidence 45565552 3 45677888999999999999983 210 1112221 1235789999999999999998888777
Q ss_pred HHHHHHHHcCCCEEE
Q 021609 105 VEAQILEAIGIDYVD 119 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi 119 (310)
.++..+...|||+|.
T Consensus 174 ~~~~~al~~GA~gV~ 188 (307)
T TIGR03151 174 RGMAAAFALGAEAVQ 188 (307)
T ss_pred HHHHHHHHcCCCEee
Confidence 778888889999995
No 373
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=94.99 E-value=0.26 Score=46.30 Aligned_cols=78 Identities=33% Similarity=0.430 Sum_probs=58.7
Q ss_pred Ccccc--cC-CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHH
Q 021609 36 GGVIM--DV-VTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 36 ~g~i~--~~-~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~ 112 (310)
.|+.. .+ .|+..++++++.|+.++. |.+..+..+.| ..+++.++.+.+..++||++.-.++.-+++..+.+
T Consensus 196 ~Gf~v~~yc~~d~~~a~~l~~~g~~avm---Pl~~pIGsg~g---v~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Ame 269 (326)
T PRK11840 196 EGFQVMVYCSDDPIAAKRLEDAGAVAVM---PLGAPIGSGLG---IQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAME 269 (326)
T ss_pred CCCEEEEEeCCCHHHHHHHHhcCCEEEe---eccccccCCCC---CCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHH
Confidence 55533 33 467899999999996552 22233332112 44899999999988999999998888889999999
Q ss_pred cCCCEEE
Q 021609 113 IGIDYVD 119 (310)
Q Consensus 113 aGad~Vi 119 (310)
.|+|+|+
T Consensus 270 lGadgVL 276 (326)
T PRK11840 270 LGCDGVL 276 (326)
T ss_pred cCCCEEE
Confidence 9999997
No 374
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=94.95 E-value=2.2 Score=40.54 Aligned_cols=173 Identities=20% Similarity=0.228 Sum_probs=100.3
Q ss_pred HHHHHHHHcCCcEEE-ec--cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeC
Q 021609 46 EQARVAEEAGACAVM-AL--ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~-~L--~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~ 121 (310)
+.|+.+.++|++.+- .. ++... ..|.|.. ..-++.+.+.++.+++|++.-.. +...++.+.+. +|.+ +.+
T Consensus 111 ~~A~~lk~~ga~~~r~~~fKpRTsp--~sf~G~g-~~gL~~L~~~~~~~Gl~v~tev~--d~~~~~~l~~~-vd~lqIgA 184 (335)
T PRK08673 111 EIARAVKEAGAQILRGGAFKPRTSP--YSFQGLG-EEGLKLLAEAREETGLPIVTEVM--DPRDVELVAEY-VDILQIGA 184 (335)
T ss_pred HHHHHHHHhchhhccCcEecCCCCC--ccccccc-HHHHHHHHHHHHHcCCcEEEeeC--CHHHHHHHHHh-CCeEEECc
Confidence 468888889988541 11 11110 1111111 12245777778889999986543 33566777777 8988 566
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEe---cCCHHHHHHHHH----hCCC-EEEEc-CC-CCCcchHHHHHHHHhhccceEee
Q 021609 122 EVLTPADEENHINKHNFRIPFVCG---CRNLGEALRRIR----EGAA-MIRTK-GE-AGTGNIIEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~---~~t~~ea~~~~~----~Gad-~V~v~-g~-~~~~~~~~~~~~~r~~~~~~~~l 191 (310)
..+...++.+.+.+ .+.+++.. ..|.+|...+.+ .|.. ++-++ |. .+.+
T Consensus 185 r~~~N~~LL~~va~--~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~------------------- 243 (335)
T PRK08673 185 RNMQNFDLLKEVGK--TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFET------------------- 243 (335)
T ss_pred ccccCHHHHHHHHc--CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCC-------------------
Confidence 66777778777654 46677665 237788776654 3553 44344 11 2211
Q ss_pred cccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCC----HHHHHHHHHcCCCEEEEccccc
Q 021609 192 RNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVAT----PADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t----~~d~~~~l~~GadgV~VGsai~ 256 (310)
+ . ....++..+..+++...+||+...+=+.+. +.-...+..+||||+++=.-+.
T Consensus 244 -~-~---------~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~ 301 (335)
T PRK08673 244 -A-T---------RNTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPD 301 (335)
T ss_pred -c-C---------hhhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCC
Confidence 0 0 012235556667776789997543333322 2455667789999999875443
No 375
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.92 E-value=2.9 Score=38.05 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=101.5
Q ss_pred HHHHHHHHcCCcEEE--ec-cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeC
Q 021609 46 EQARVAEEAGACAVM--AL-ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~--~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~ 121 (310)
+.|+.+.+.|+..+. .. |+.. ...|.|-.. .-++.+.++++.+++|++.-.. +...++.+.+ .+|.+ +.+
T Consensus 33 ~~a~~~~~~g~~~~r~g~~kpRts--~~sf~G~G~-~gl~~L~~~~~~~Gl~~~Tev~--d~~~v~~~~e-~vdilqIgs 106 (250)
T PRK13397 33 LAASSAKKLGYNYFRGGAYKPRTS--AASFQGLGL-QGIRYLHEVCQEFGLLSVSEIM--SERQLEEAYD-YLDVIQVGA 106 (250)
T ss_pred HHHHHHHHcCCCEEEecccCCCCC--CcccCCCCH-HHHHHHHHHHHHcCCCEEEeeC--CHHHHHHHHh-cCCEEEECc
Confidence 568888899988661 11 2111 111222211 2356777778889999986433 3456677766 69998 566
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEe---cCCHHHHHHHHH----hCC-CEEEEc-CCCCCcchHHHHHHHHhhccceEeec
Q 021609 122 EVLTPADEENHINKHNFRIPFVCG---CRNLGEALRRIR----EGA-AMIRTK-GEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~---~~t~~ea~~~~~----~Ga-d~V~v~-g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
..+...++.+.+.+ .+.+++++ ..+.+|...+.+ .|. +++.++ |. ++. +
T Consensus 107 ~~~~n~~LL~~va~--tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~--~~Y------------------~ 164 (250)
T PRK13397 107 RNMQNFEFLKTLSH--IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGV--RGY------------------D 164 (250)
T ss_pred ccccCHHHHHHHHc--cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEcccc--CCC------------------C
Confidence 66677777777654 45666665 457777666543 466 455555 32 110 1
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCC--CCCCC--HHHHHHHHHcCCCEEEEccccccCCCHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAA--GGVAT--PADAAMMMQLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~--GGI~t--~~d~~~~l~~GadgV~VGsai~~a~dp~~ 263 (310)
+.. ....++..+..+++..++||++-.+ +|.+. +.-...+..+||||+++= ++.||..
T Consensus 165 ~~~---------~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE----~H~~P~~ 226 (250)
T PRK13397 165 VET---------RNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMME----VHPDPDH 226 (250)
T ss_pred Ccc---------ccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEE----ecCCccc
Confidence 100 0123344566666666899984111 34322 233556668999999965 4566753
No 376
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=94.89 E-value=2.7 Score=37.55 Aligned_cols=175 Identities=14% Similarity=0.163 Sum_probs=99.8
Q ss_pred cccCCCHHHHHHHHHcC-CcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccC----cHHHHHHHH
Q 021609 39 IMDVVTPEQARVAEEAG-ACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIG----HFVEAQILE 111 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~G-a~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~----~~~~a~~~~ 111 (310)
+.|-.|.+..+.+.+.| .+++ --||. ..+..|.. ...+.++++++.. +.||.+...-. ..++++.+.
T Consensus 4 flDtAd~~~i~~~~~~~~i~Gv-TTNPs--ll~k~g~~---~~~~~~~~i~~~i~~~~~vs~ev~~~~~~~mi~eA~~l~ 77 (222)
T PRK12656 4 MLDTLNLEAIKKWHEILPLAGV-TSNPS--IAKKEGDI---DFFERIREVREIIGDEASIHVQVVAQDYEGILKDAHEIR 77 (222)
T ss_pred EEecCCHHHHHHHHhcCCcceE-eCCHH--HHHhcCCC---CHHHHHHHHHHHhCCCCcEEEEEEECCHHHHHHHHHHHH
Confidence 34556777777777766 3554 44432 22222211 2246777887765 34676553322 235566655
Q ss_pred -HcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhccc
Q 021609 112 -AIGIDYVD-ESEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 112 -~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~ 187 (310)
..|-+.++ ++...+-....+.+.+. ++.+.+ -+.+.+.+..+.++|++||... |+.
T Consensus 78 ~~~~~nv~VKIP~T~~Gl~Ai~~L~~~--Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi------------------ 137 (222)
T PRK12656 78 RQCGDDVYIKVPVTPAGLAAIKTLKAE--GYHITATAIYTVFQGLLAIEAGADYLAPYYNRM------------------ 137 (222)
T ss_pred HHhCCCEEEEeCCCHHHHHHHHHHHHC--CCceEEeeeCCHHHHHHHHHCCCCEEecccchh------------------
Confidence 46755555 44332223334444443 444433 3789999999999999999764 221
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHh----hc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTK----QL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~----~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
...+ ..+.+.+.++. .. .+.-|+ ..-++++.++.++..+|||.+-+.-.+++
T Consensus 138 ----~d~g-----------~D~~~~i~~i~~~~~~~~~~tkIL---aAS~r~~~~v~~a~~~G~d~vTvp~~vl~ 194 (222)
T PRK12656 138 ----ENLN-----------IDSNAVIGQLAEAIDRENSDSKIL---AASFKNVAQVNKAFALGAQAVTAGPDVFE 194 (222)
T ss_pred ----hhcC-----------CCHHHHHHHHHHHHHhcCCCCEEE---EEecCCHHHHHHHHHcCCCEEecCHHHHH
Confidence 0111 11223333322 21 244454 36789999999999999999988755554
No 377
>PRK14565 triosephosphate isomerase; Provisional
Probab=94.86 E-value=0.42 Score=43.09 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=32.0
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHH
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~ 263 (310)
+++|+ -+|+| +++++..++. .+.||++||++.++++++..
T Consensus 189 ~~~Il--YGGSV-~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ 229 (237)
T PRK14565 189 KSHII--YGGSV-NQENIRDLKSINQLSGVLVGSASLDVDSFCK 229 (237)
T ss_pred CceEE--EcCcc-CHhhHHHHhcCCCCCEEEEechhhcHHHHHH
Confidence 57888 46888 6999999885 59999999999997555443
No 378
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=94.85 E-value=1.8 Score=39.63 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=86.9
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeCCCCCchhHHHHHHhcCCCCcEEEec--C-CHHHHHHHH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DESEVLTPADEENHINKHNFRIPFVCGC--R-NLGEALRRI 156 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~~~~~~~~~~~~i~~~~~~i~~~v~~--~-t~~ea~~~~ 156 (310)
++.+++.++..++|+..-.. +...++.+.+. +|.+ +.+..+...++.+.+.+ .+.+++++. . +.+|...+.
T Consensus 78 l~~l~~~~~~~Gl~~~t~~~--d~~~~~~l~~~-~d~lkI~s~~~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~Av 152 (260)
T TIGR01361 78 LKLLRRAADEHGLPVVTEVM--DPRDVEIVAEY-ADILQIGARNMQNFELLKEVGK--QGKPVLLKRGMGNTIEEWLYAA 152 (260)
T ss_pred HHHHHHHHHHhCCCEEEeeC--ChhhHHHHHhh-CCEEEECcccccCHHHHHHHhc--CCCcEEEeCCCCCCHHHHHHHH
Confidence 45677778888999986543 33566777777 8988 45666677777777654 466777763 3 788877665
Q ss_pred H----hCC-CEEEEc-CC-CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeC-
Q 021609 157 R----EGA-AMIRTK-GE-AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFA- 228 (310)
Q Consensus 157 ~----~Ga-d~V~v~-g~-~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA- 228 (310)
+ .|. +++.++ |. .|.+ + .....++..+..+++..++||++.+
T Consensus 153 e~i~~~Gn~~i~l~~rG~s~y~~--------------------~----------~~~~~dl~~i~~lk~~~~~pV~~ds~ 202 (260)
T TIGR01361 153 EYILSSGNGNVILCERGIRTFEK--------------------A----------TRNTLDLSAVPVLKKETHLPIIVDPS 202 (260)
T ss_pred HHHHHcCCCcEEEEECCCCCCCC--------------------C----------CcCCcCHHHHHHHHHhhCCCEEEcCC
Confidence 4 466 444444 22 1101 0 0123456667777776689998411
Q ss_pred -CCCCCC--HHHHHHHHHcCCCEEEEccccc
Q 021609 229 -AGGVAT--PADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 229 -~GGI~t--~~d~~~~l~~GadgV~VGsai~ 256 (310)
++|-+. +.-...+..+||+|+++=+-+.
T Consensus 203 Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t 233 (260)
T TIGR01361 203 HAAGRRDLVIPLAKAAIAAGADGLMIEVHPD 233 (260)
T ss_pred CCCCccchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 233111 4445567789999998776555
No 379
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=94.81 E-value=0.37 Score=43.57 Aligned_cols=34 Identities=32% Similarity=0.620 Sum_probs=29.8
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEcccccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFK 257 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~ 257 (310)
++||+ -+|+| +++|+.+++..+ +||++||++-++
T Consensus 199 ~~~Il--YGGSV-~~~N~~~l~~~~~vDG~LVG~Asl~ 233 (242)
T cd00311 199 KVRIL--YGGSV-NPENAAELLAQPDIDGVLVGGASLK 233 (242)
T ss_pred ceeEE--ECCCC-CHHHHHHHhcCCCCCEEEeehHhhC
Confidence 57888 47888 579999999887 999999999996
No 380
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.81 E-value=0.7 Score=42.34 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=47.5
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc-CCc-cccccc--CCCCCCCCHHHHHHHHhhcCcc-eeeccccC-c---HH----
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE-RVP-ADIRSQ--GGVARMSDPQLIKEIKQSVTIP-VMAKARIG-H---FV---- 105 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~-~~~-~~~~~~--~G~~~~~~~~~i~~i~~~~~iP-v~vk~~~~-~---~~---- 105 (310)
+...-|+..|+.++++|++.+. .- ... ...... ....+......++.+++.++.| |++...++ + .+
T Consensus 19 ~~tayD~~sArl~e~aG~d~i~-vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~ 97 (264)
T PRK00311 19 MLTAYDYPFAKLFDEAGVDVIL-VGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALR 97 (264)
T ss_pred EEeCCCHHHHHHHHHcCCCEEE-ECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHH
Confidence 3444567889999999999872 21 000 000000 0000111134556667777886 55554433 2 12
Q ss_pred H-HHHHHHcCCCEEEeCCCCCchhHHHHHH
Q 021609 106 E-AQILEAIGIDYVDESEVLTPADEENHIN 134 (310)
Q Consensus 106 ~-a~~~~~aGad~Vi~~~~~~~~~~~~~i~ 134 (310)
. .+.+.++||++|-+-+.....+.++.+.
T Consensus 98 ~a~r~~~~aGa~aVkiEdg~~~~~~I~al~ 127 (264)
T PRK00311 98 NAGRLMKEAGAHAVKLEGGEEVAETIKRLV 127 (264)
T ss_pred HHHHHHHHhCCeEEEEcCcHHHHHHHHHHH
Confidence 2 3444559999995444323333344443
No 381
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=94.80 E-value=0.6 Score=43.00 Aligned_cols=105 Identities=17% Similarity=0.099 Sum_probs=72.2
Q ss_pred HHHHHHHHHcCCCEEE----eCC---------CCCchhHHHHHHhcCCCCcEEEec--CCHHHHHHHHHhCCCEEEEcCC
Q 021609 104 FVEAQILEAIGIDYVD----ESE---------VLTPADEENHINKHNFRIPFVCGC--RNLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi----~~~---------~~~~~~~~~~i~~~~~~i~~~v~~--~t~~ea~~~~~~Gad~V~v~g~ 168 (310)
.+++++++++||-.|- .+. .++.++.++.+++ ...+|++.-+ ..+.|++.+.++|+|+|--
T Consensus 20 ~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~-~V~iPVig~~kigh~~Ea~~L~~~GvDiIDe--- 95 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMD-AVSIPVMAKVRIGHFVEAQILEALGVDYIDE--- 95 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHH-hCCCCEEEEeeccHHHHHHHHHHcCCCEEEc---
Confidence 4788888889988883 221 1344455555544 2567776653 4579999999999999941
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
|.. ..|..++...++...++|++ .|++|.+++.+....|||-
T Consensus 96 --Te~--------------------------------lrPade~~~~~K~~f~vpfm----ad~~~l~EAlrai~~Gadm 137 (287)
T TIGR00343 96 --SEV--------------------------------LTPADWTFHIDKKKFKVPFV----CGARDLGEALRRINEGAAM 137 (287)
T ss_pred --cCC--------------------------------CCcHHHHHHHHHHHcCCCEE----ccCCCHHHHHHHHHCCCCE
Confidence 110 12224455556655589998 6999999999999999997
Q ss_pred EE
Q 021609 249 VF 250 (310)
Q Consensus 249 V~ 250 (310)
|-
T Consensus 138 I~ 139 (287)
T TIGR00343 138 IR 139 (287)
T ss_pred Ee
Confidence 74
No 382
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.79 E-value=0.31 Score=45.29 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=66.1
Q ss_pred HHHHHHHHcCCcEEEeccCC--cccccccCCCCCCCCHHHHHHHHhh----cCcceeeccccC------c---HHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERV--PADIRSQGGVARMSDPQLIKEIKQS----VTIPVMAKARIG------H---FVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~--~~~~~~~~G~~~~~~~~~i~~i~~~----~~iPv~vk~~~~------~---~~~a~~~ 110 (310)
..++.++++|+.++ .++.+ |+......|.......+.+.+|+.. .+.++++.-|.. . .+.++.+
T Consensus 97 r~V~~~~~aGaagi-~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY 175 (292)
T PRK11320 97 RTVKSMIKAGAAAV-HIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAY 175 (292)
T ss_pred HHHHHHHHcCCeEE-EEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHH
Confidence 56899999999997 77533 2211111122223334566666533 245666654432 1 3557888
Q ss_pred HHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecC----CH-HHHHHHHHhCCCEEEEc
Q 021609 111 EAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCR----NL-GEALRRIREGAAMIRTK 166 (310)
Q Consensus 111 ~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~----t~-~ea~~~~~~Gad~V~v~ 166 (310)
.++|||.|......+..++.+..+.. +.++.+... ++ -....+.++|+..|...
T Consensus 176 ~eAGAD~ifi~~~~~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~ 234 (292)
T PRK11320 176 VEAGADMIFPEAMTELEMYRRFADAV--KVPILANITEFGATPLFTTEELASAGVAMVLYP 234 (292)
T ss_pred HHcCCCEEEecCCCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEC
Confidence 99999999755444555665555432 333322111 10 13455678899988754
No 383
>PRK14567 triosephosphate isomerase; Provisional
Probab=94.76 E-value=0.76 Score=41.84 Aligned_cols=37 Identities=22% Similarity=0.494 Sum_probs=31.1
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCC
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGD 260 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~d 260 (310)
+++++ -+|+| +++++.+++..+ .||++||++-+++++
T Consensus 202 ~v~Il--YGGSV-~~~N~~~l~~~~diDG~LVGgasL~~~~ 239 (253)
T PRK14567 202 NIKIV--YGGSL-KAENAKDILSLPDVDGGLIGGASLKAAE 239 (253)
T ss_pred cceEE--EcCcC-CHHHHHHHHcCCCCCEEEeehhhhcHHH
Confidence 57888 47888 899999999776 999999999996444
No 384
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.74 E-value=0.32 Score=43.03 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=59.8
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCE
Q 021609 38 VIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDY 117 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~ 117 (310)
++..+.+.+.++.+.+.|++.+ ..+........ ........+.++++++.+++|+++..++...++++.+.+.|+|+
T Consensus 122 vi~~v~t~ee~~~a~~~G~d~i-~~~~~g~t~~~--~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~Gadg 198 (221)
T PRK01130 122 LMADCSTLEEGLAAQKLGFDFI-GTTLSGYTEET--KKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHA 198 (221)
T ss_pred EEEeCCCHHHHHHHHHcCCCEE-EcCCceeecCC--CCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCE
Confidence 3456778888999999999976 33210000000 01112346889999988899999988876668888999999999
Q ss_pred EE-eCCCCCchhH
Q 021609 118 VD-ESEVLTPADE 129 (310)
Q Consensus 118 Vi-~~~~~~~~~~ 129 (310)
|. ++....+.+.
T Consensus 199 V~iGsai~~~~~~ 211 (221)
T PRK01130 199 VVVGGAITRPEEI 211 (221)
T ss_pred EEEchHhcCCHHH
Confidence 96 4444444443
No 385
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=94.66 E-value=0.97 Score=41.84 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCC-------HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSD-------PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~-------~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.+.||+.| +++..++.. |+..... ...++.+++.+++|+.+..+ ..+.++.+.++|||.|
T Consensus 42 ~~a~~~~~~GAdII-DIGgeSTrP----g~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~--~~~va~~AL~~GadiI 114 (282)
T PRK11613 42 KHANLMINAGATII-DVGGESTRP----GAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTS--KPEVIRESAKAGAHII 114 (282)
T ss_pred HHHHHHHHCCCcEE-EECCCCCCC----CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECC--CHHHHHHHHHcCCCEE
Confidence 56888899999965 886322211 1111111 22444556556889887765 3477899999999988
Q ss_pred -EeCCCCCchhHHHHHHhcCCCCcE
Q 021609 119 -DESEVLTPADEENHINKHNFRIPF 142 (310)
Q Consensus 119 -i~~~~~~~~~~~~~i~~~~~~i~~ 142 (310)
.++. +...+..+.+++++..+.+
T Consensus 115 NDI~g-~~d~~~~~~~a~~~~~vVl 138 (282)
T PRK11613 115 NDIRS-LSEPGALEAAAETGLPVCL 138 (282)
T ss_pred EECCC-CCCHHHHHHHHHcCCCEEE
Confidence 2332 2333444445444333333
No 386
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=94.60 E-value=0.19 Score=47.43 Aligned_cols=79 Identities=24% Similarity=0.268 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHH-cCCCEEE-eCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEA-IGIDYVD-ESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~-aGad~Vi-~~~~ 123 (310)
+.++.++++|+++| .+.+...... +.|. .+.+.++++++++++||+.+..+...++++.+.+ .|+|+|. +...
T Consensus 153 ~~a~~le~~G~d~i-~vh~rt~~~~-~~G~---a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~ 227 (321)
T PRK10415 153 EIAQLAEDCGIQAL-TIHGRTRACL-FNGE---AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAA 227 (321)
T ss_pred HHHHHHHHhCCCEE-EEecCccccc-cCCC---cChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHh
Confidence 78889999999998 3321111111 1121 2468999999999999999888877788877776 7999995 3333
Q ss_pred CCchhH
Q 021609 124 LTPADE 129 (310)
Q Consensus 124 ~~~~~~ 129 (310)
+..+.+
T Consensus 228 l~nP~i 233 (321)
T PRK10415 228 QGRPWI 233 (321)
T ss_pred hcCChH
Confidence 433333
No 387
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=94.55 E-value=1.1 Score=42.06 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=74.7
Q ss_pred CCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHH
Q 021609 137 NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216 (310)
Q Consensus 137 ~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i 216 (310)
..++.++.++.+...+..+...++...++.... ...+.+++.+
T Consensus 101 ~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E-------------------------------------~~~~plik~i 143 (347)
T COG2089 101 KRGIIFFSSPFDLTAVDLLESLNPPAYKIASGE-------------------------------------INDLPLIKYI 143 (347)
T ss_pred HcCeEEEecCCCHHHHHHHHhcCCCeEEecCcc-------------------------------------ccChHHHHHH
Confidence 357888888888888888888888888764211 2345678888
Q ss_pred hhcCCCCEEEeCCCCCCCHHHHHHHHH----cCCCE--EEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhccc
Q 021609 217 KQLGRLPVVHFAAGGVATPADAAMMMQ----LGCDG--VFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGE 290 (310)
Q Consensus 217 ~~~~~iPVi~iA~GGI~t~~d~~~~l~----~Gadg--V~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~ 290 (310)
++. +.|+| .+-|+.+.+++.+++. .|.-. ++=++..| +-|..-+ +-..+..|.+.|
T Consensus 144 A~~-~kPiI--lSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~Y--Pap~ed~-----------NL~~i~~l~~~F-- 205 (347)
T COG2089 144 AKK-GKPII--LSTGMATIEEIEEAVAILRENGNPDIALLHCTSAY--PAPFEDV-----------NLKAIPKLAEAF-- 205 (347)
T ss_pred Hhc-CCCEE--EEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCC--CCCHHHh-----------hHHHHHHHHHHh--
Confidence 774 45998 5889999999888773 57663 33344444 3454321 123345677777
Q ss_pred chhcccCccchhh
Q 021609 291 AMVGLNLSDHKVE 303 (310)
Q Consensus 291 ~~~~~~~~~~~~~ 303 (310)
...+|+|||.+-
T Consensus 206 -n~~vGlSDHT~g 217 (347)
T COG2089 206 -NAIVGLSDHTLG 217 (347)
T ss_pred -CCccccccCccc
Confidence 677888998765
No 388
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=94.54 E-value=3.4 Score=37.08 Aligned_cols=173 Identities=15% Similarity=0.127 Sum_probs=103.7
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC-
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~- 122 (310)
+.|..++++||++| +.|. +|.|. -..+++..+++.+..|+=+-... ..+..+.+.+.-.|.|. .++
T Consensus 25 ~aA~~a~~aGAdgITvHlR---eDrRH-------I~d~Dv~~L~~~~~~~lNlE~a~-t~em~~ia~~~kP~~vtLVPEk 93 (234)
T cd00003 25 EAALLAEKAGADGITVHLR---EDRRH-------IQDRDVRLLRELVRTELNLEMAP-TEEMLEIALEVKPHQVTLVPEK 93 (234)
T ss_pred HHHHHHHHcCCCEEEecCC---CCcCc-------CCHHHHHHHHHHcCCCEEeccCC-CHHHHHHHHHCCCCEEEECCCC
Confidence 67888999999999 6773 12222 12578888888777666544332 34778899999999984 332
Q ss_pred --------CCC----c---hhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 123 --------VLT----P---ADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 123 --------~~~----~---~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
++. . .+..+.++..+..+..+++. +.+....+.+.|+|.|-+|...|....
T Consensus 94 r~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP-d~~qi~~A~~~GAd~VELhTG~Ya~a~------------- 159 (234)
T cd00003 94 REELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDP-DPEQIEAAKEVGADRVELHTGPYANAY------------- 159 (234)
T ss_pred CCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHhCcCEEEEechhhhcCC-------------
Confidence 111 1 23344444444555666664 567788888999999988743331110
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEcccccc
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFK 257 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~ 257 (310)
+.... .+... .+...........+-|= |+-|+ +.+++..+.. -+..-+-+|-+|+.
T Consensus 160 -------~~~~~---~~el~-~i~~aa~~a~~~GL~Vn--AGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia 216 (234)
T cd00003 160 -------DKAER---EAELE-RIAKAAKLARELGLGVN--AGHGL-NYENVKPIAKIPGIAELNIGHAIIS 216 (234)
T ss_pred -------CchhH---HHHHH-HHHHHHHHHHHcCCEEe--cCCCC-CHHHHHHHHhCCCCeEEccCHHHHH
Confidence 00000 00000 01111111122345565 88898 7999988775 47889999988884
No 389
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=94.53 E-value=0.58 Score=42.44 Aligned_cols=42 Identities=21% Similarity=0.424 Sum_probs=32.6
Q ss_pred HHhhcCCCCEEEeCCCCCCC---HHHHHHHHHcCCCEEEEcccccc
Q 021609 215 QTKQLGRLPVVHFAAGGVAT---PADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 215 ~i~~~~~iPVi~iA~GGI~t---~~d~~~~l~~GadgV~VGsai~~ 257 (310)
......++|.++ .|.|++. ++.+.-++++||+||++|++...
T Consensus 224 ~~~~~~~lP~i~-LSAGV~~klF~~tv~fA~eaGAsGvL~GRAtWa 268 (306)
T COG3684 224 RQNDHINLPWIY-LSAGVSAKLFQRTVRFAMEAGASGVLAGRATWA 268 (306)
T ss_pred HhhcCCCCCeEE-EecCccHHHhHHHHHHHHHcCCceeEechhhhh
Confidence 334456899987 5999953 25666777899999999999986
No 390
>KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism]
Probab=94.42 E-value=0.61 Score=40.50 Aligned_cols=70 Identities=24% Similarity=0.355 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc--Cc-----------HHHHHH
Q 021609 43 VTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI--GH-----------FVEAQI 109 (310)
Q Consensus 43 ~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~--~~-----------~~~a~~ 109 (310)
.+.+-|..++++||+.| +|+.. ... ||- .++.-.++-++..+.+|+-+..+. ++ .++++.
T Consensus 17 Ds~eSA~nAe~GGAdRi-ElCSa---L~e-GGl--TPSvG~l~~~k~~~~iP~ycMiRpR~GDFvYsd~Em~a~~~Dv~l 89 (255)
T KOG4013|consen 17 DSLESAENAEAGGADRI-ELCSA---LQE-GGL--TPSVGFLSILKYKYPIPLYCMIRPRAGDFVYSDDEMAANMEDVEL 89 (255)
T ss_pred hhHHHHHhHhhcCccHh-HHhhh---hcc-CCC--CCcchhhhhhhcccccceEEEEecCCCCcccchHHHHHHHHHHHH
Confidence 34578899999999997 66521 111 222 334557777888899999887554 21 256777
Q ss_pred HHHcCCCEEE
Q 021609 110 LEAIGIDYVD 119 (310)
Q Consensus 110 ~~~aGad~Vi 119 (310)
+.++|||+++
T Consensus 90 lk~~GAdGfV 99 (255)
T KOG4013|consen 90 LKKAGADGFV 99 (255)
T ss_pred HHHcCCCceE
Confidence 8889999986
No 391
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=94.33 E-value=3.8 Score=36.83 Aligned_cols=173 Identities=17% Similarity=0.182 Sum_probs=104.0
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC-
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~- 122 (310)
+.|..++++||++| +.|. +|.|. -..+++..+++.+..|+=+-... ..+..+.+.+.-.|.|. .++
T Consensus 25 ~aA~~a~~aGAdgITvHlR---eDrRH-------I~d~Dv~~l~~~~~~~lNlE~a~-~~emi~ia~~vkP~~vtLVPEk 93 (237)
T TIGR00559 25 RAALIAEQAGADGITVHLR---EDRRH-------IQDRDVYDLKEALTTPFNIEMAP-TEEMIRIAEEIKPEQVTLVPEA 93 (237)
T ss_pred HHHHHHHHcCCCEEEecCC---CCcCc-------CCHHHHHHHHHHcCCCEEeccCC-CHHHHHHHHHcCCCEEEECCCC
Confidence 67888899999999 6773 12222 12578888888877766554432 34778889999999984 332
Q ss_pred --------CCC-------chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 123 --------VLT-------PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 123 --------~~~-------~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
++. ..+.++.++..+..+..+++. +.+....+.+.|+|.|-+|...|....
T Consensus 94 r~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP-~~~qi~~A~~~GAd~VELhTG~YA~a~------------- 159 (237)
T TIGR00559 94 RDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDA-DKDQISAAAEVGADRIEIHTGPYANAY------------- 159 (237)
T ss_pred CCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHhCcCEEEEechhhhcCC-------------
Confidence 111 223344444445556667765 567788888999999988743331110
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc-C-CCEEEEcccccc
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-G-CDGVFVGSGVFK 257 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~-G-adgV~VGsai~~ 257 (310)
+.... ..... .+...........+-|- |+-|+ +..++..+... + ..-+-+|-+|+.
T Consensus 160 -------~~~~~---~~el~-~i~~aa~~A~~lGL~Vn--AGHgL-ny~Nv~~i~~~~~~i~EvnIGHsiia 217 (237)
T TIGR00559 160 -------NKKEM---AEELQ-RIVKASVHAHSLGLKVN--AGHGL-NYHNVKYFAEILPYLDELNIGHAIIA 217 (237)
T ss_pred -------CchhH---HHHHH-HHHHHHHHHHHcCCEEe--cCCCC-CHHhHHHHHhCCCCceEEecCHHHHH
Confidence 00000 00000 01111111122355665 88898 79999888754 4 789999988884
No 392
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=94.31 E-value=4.6 Score=38.75 Aligned_cols=173 Identities=14% Similarity=0.175 Sum_probs=99.7
Q ss_pred HHHHHHHHcCCcEEE-ec--cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeC
Q 021609 46 EQARVAEEAGACAVM-AL--ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~-~L--~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~ 121 (310)
+.|+.+.+.|+..+- .. ++.. ...|-|.. ...+..+.+.++.+++|++.-.. +...++.+.+. +|.+ +.+
T Consensus 136 ~~A~~lk~~g~~~~r~~~~kpRts--p~~f~g~~-~e~l~~L~~~~~~~Gl~~~t~v~--d~~~~~~l~~~-vd~lkI~s 209 (360)
T PRK12595 136 AVAKALKAKGLKLLRGGAFKPRTS--PYDFQGLG-VEGLKILKQVADEYGLAVISEIV--NPADVEVALDY-VDVIQIGA 209 (360)
T ss_pred HHHHHHHHcCCcEEEccccCCCCC--CccccCCC-HHHHHHHHHHHHHcCCCEEEeeC--CHHHHHHHHHh-CCeEEECc
Confidence 467778788877551 11 1110 01112221 12345666777888999986443 34667788888 9988 566
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEe--c-CCHHHHHHHHH----hCC-CEEEEc-CCCCCcchHHHHHHHHhhccceEeec
Q 021609 122 EVLTPADEENHINKHNFRIPFVCG--C-RNLGEALRRIR----EGA-AMIRTK-GEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~--~-~t~~ea~~~~~----~Ga-d~V~v~-g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
..+...++.+.+.+ .+.+++++ . .|.+|...+.+ .|. +++.++ |.. .++
T Consensus 210 ~~~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s--------------------~yp 267 (360)
T PRK12595 210 RNMQNFELLKAAGR--VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIR--------------------TYE 267 (360)
T ss_pred ccccCHHHHHHHHc--cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccC--------------------CCC
Confidence 66667777776654 46676665 3 47888777654 466 455554 321 111
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCC--CCCCC--HHHHHHHHHcCCCEEEEcccc
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAA--GGVAT--PADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~--GGI~t--~~d~~~~l~~GadgV~VGsai 255 (310)
+..+ ...++..+..+++..++||++-.+ +|-+. +.-...+..+||||+++=+=+
T Consensus 268 ~~~~---------~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 268 KATR---------NTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CCCC---------CCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 1111 123566777777767899984111 23111 123445678999999987655
No 393
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=94.26 E-value=3.8 Score=36.54 Aligned_cols=173 Identities=14% Similarity=0.124 Sum_probs=97.8
Q ss_pred cccCCCHHHHHHHHHcC-CcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC--cceeeccccC----cHHHHHHHH
Q 021609 39 IMDVVTPEQARVAEEAG-ACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT--IPVMAKARIG----HFVEAQILE 111 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~G-a~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~--iPv~vk~~~~----~~~~a~~~~ 111 (310)
+.|-.|.+..+.+.+.| .+++ --||. ..+..+ . ...+.++++++..+ -|+.+..... ..++++.+.
T Consensus 4 flDtA~~~~i~~~~~~~~i~Gv-TTNPs--ll~k~g-~---~~~~~~~~i~~~~~~~~~v~~Qv~~~d~e~mi~ea~~l~ 76 (220)
T PRK12653 4 YLDTSDVVAVKALSRIFPLAGV-TTNPS--IIAAGK-K---PLEVVLPQLHEAMGGQGRLFAQVMATTAEGMVNDARKLR 76 (220)
T ss_pred EEecCCHHHHHHHHhCCCccEE-eCCHH--HHHhcC-C---CHHHHHHHHHHHhCCCCcEEEEEecCCHHHHHHHHHHHH
Confidence 34556677777777766 3554 44432 222222 1 23467777776653 3566543322 235566777
Q ss_pred HcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhccce
Q 021609 112 AIGIDYVD-ESEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 112 ~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
+.+-+.++ ++...+=....+.+++. ++.+.+ .+-+.+.+..+..+|++||... |+.
T Consensus 77 ~~~~ni~IKIP~T~~Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~------------------- 135 (220)
T PRK12653 77 SIIADIVVKVPVTAEGLAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRI------------------- 135 (220)
T ss_pred HhCCCEEEEeCCCHHHHHHHHHHHHc--CCCeeEEEecCHHHHHHHHhcCCcEEEeecChH-------------------
Confidence 77766555 44332223344445443 444433 4789999999999999999864 221
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhh---c--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ---L--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~---~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
.... ..+...++++.+ . .+.-++ ...+++++++.+++.+|+|.+-+.-.++
T Consensus 136 ---~~~g-----------~dg~~~i~~i~~~~~~~~~~tkIL---aAS~r~~~~v~~~~~~G~d~vTip~~vl 191 (220)
T PRK12653 136 ---DAQG-----------GSGIQTVTDLQQLLKMHAPQAKVL---AASFKTPRQALDCLLAGCESITLPLDVA 191 (220)
T ss_pred ---hhcC-----------CChHHHHHHHHHHHHhcCCCcEEE---EEecCCHHHHHHHHHcCCCEEECCHHHH
Confidence 0001 112222222222 1 234454 4678899999999999999998775444
No 394
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=94.25 E-value=3.8 Score=36.54 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=98.1
Q ss_pred cccCCCHHHHHHHHHcC-CcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccC----cHHHHHHHH
Q 021609 39 IMDVVTPEQARVAEEAG-ACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIG----HFVEAQILE 111 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~G-a~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~----~~~~a~~~~ 111 (310)
+.|-.+.+..+.+.+.| .+++ --||. ..+..+ . ...+.++++++.. .-|+.+..... ..++++.+.
T Consensus 4 flDtA~~~~i~~~~~~~~i~Gv-TTNPs--ll~k~g-~---~~~~~~~~i~~~~~~~~~v~~qv~~~d~e~mi~eA~~l~ 76 (220)
T PRK12655 4 YLDTANVAEVERLARIFPIAGV-TTNPS--IIAASK-E---SIWEVLPRLQKAIGGEGILFAQTMSRDAQGMVEEAKRLR 76 (220)
T ss_pred EEecCCHHHHHHHHhCCCccEE-eCCHH--HHHhcC-C---CHHHHHHHHHHHhCCCCCEEEEEeeCCHHHHHHHHHHHH
Confidence 34556677777777766 3554 44432 222222 1 2356777777764 34566543322 235666777
Q ss_pred HcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhccce
Q 021609 112 AIGIDYVD-ESEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 112 ~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
+.+-+.++ ++...+=....+.+++. |+.+.+ .+.|.+.+..+..+|++||... |+..
T Consensus 77 ~~~~nv~IKIP~T~~Gl~Ai~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~------------------ 136 (220)
T PRK12655 77 NAIPGIVVKIPVTAEGLAAIKKLKKE--GIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVD------------------ 136 (220)
T ss_pred HhCCCEEEEeCCCHHHHHHHHHHHHC--CCceeEeEecCHHHHHHHHHcCCeEEEeecchHh------------------
Confidence 77656555 44332222334444443 544433 3789999999999999999864 2210
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHh----hc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTK----QL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~----~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
..+ ..+...++++. .. .+.-|+ ...++++.++.+++.+|||.+-+.-.+++
T Consensus 137 ----~~g-----------~dg~~~i~~~~~~~~~~~~~tkIL---aAS~r~~~~v~~~~~~G~d~vTip~~vl~ 192 (220)
T PRK12655 137 ----AQG-----------GDGIRMVQELQTLLEMHAPESMVL---AASFKTPRQALDCLLAGCQSITLPLDVAQ 192 (220)
T ss_pred ----HcC-----------CCHHHHHHHHHHHHHhcCCCcEEE---EEecCCHHHHHHHHHcCCCEEECCHHHHH
Confidence 001 11223333332 21 234454 46788999999999999999987754443
No 395
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=94.20 E-value=0.37 Score=42.91 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=51.3
Q ss_pred HHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEE-eCCCC
Q 021609 47 QARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVD-ESEVL 124 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~ 124 (310)
.|.+.+..| ..+++|+ +.|. ..+++.++++++.+ ++|+++...+...++++.+.++|||.|+ ++...
T Consensus 140 yA~aae~~g-~~ivyLe--------~SG~--~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~ 208 (219)
T cd02812 140 YALAAEYLG-MPIVYLE--------YSGA--YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVE 208 (219)
T ss_pred HHHHHHHcC-CeEEEeC--------CCCC--cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 355556677 4456772 2223 35689999999998 9999999888888999999999999996 45444
Q ss_pred Cc
Q 021609 125 TP 126 (310)
Q Consensus 125 ~~ 126 (310)
+.
T Consensus 209 ~~ 210 (219)
T cd02812 209 ED 210 (219)
T ss_pred CC
Confidence 43
No 396
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=94.19 E-value=0.43 Score=44.59 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=28.5
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
+++||| +++++.++.++|+|.+.||+.++.+
T Consensus 249 eaSGgI-~~~~i~~~a~~gvD~isvGs~~~~~ 279 (302)
T cd01571 249 FVSGGL-DEEDIKELEDVGVDAFGVGTAISKA 279 (302)
T ss_pred EEeCCC-CHHHHHHHHHcCCCEEECCcccCCC
Confidence 389999 7999999999999999999999874
No 397
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=94.17 E-value=0.5 Score=43.82 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCcEEEeccCCccccccc--CCCCCCCCHHHHHHHHhh----cCcceeeccccC------c---HHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQ--GGVARMSDPQLIKEIKQS----VTIPVMAKARIG------H---FVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~--~G~~~~~~~~~i~~i~~~----~~iPv~vk~~~~------~---~~~a~~~ 110 (310)
..++.++++|+.++ .++.+....+.. .|.......+.+.+|+.. .+.++++.-|.. . .+.++.+
T Consensus 92 ~tv~~~~~aG~agi-~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay 170 (285)
T TIGR02317 92 RTVREMEDAGAAAV-HIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAY 170 (285)
T ss_pred HHHHHHHHcCCeEE-EEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHH
Confidence 56899999999997 775331111211 122222333556666432 245566654432 1 3556888
Q ss_pred HHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecC----CH-HHHHHHHHhCCCEEEEcC
Q 021609 111 EAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCR----NL-GEALRRIREGAAMIRTKG 167 (310)
Q Consensus 111 ~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~----t~-~ea~~~~~~Gad~V~v~g 167 (310)
.++|||.|......+..++.+..++. ..++.+.+. ++ -....+.++|+..|...+
T Consensus 171 ~~AGAD~vfi~g~~~~e~i~~~~~~i--~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~ 230 (285)
T TIGR02317 171 VEAGADMIFPEALTSLEEFRQFAKAV--KVPLLANMTEFGKTPLFTADELREAGYKMVIYPV 230 (285)
T ss_pred HHcCCCEEEeCCCCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEch
Confidence 99999999755444556665555442 233322111 11 135556788999887643
No 398
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.16 E-value=2.2 Score=38.37 Aligned_cols=166 Identities=19% Similarity=0.176 Sum_probs=87.6
Q ss_pred HHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeCCC
Q 021609 46 EQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~ 123 (310)
+.+..+.+.|++.| ++- +.+. +.. ..+....+.++.+++.. +.++.+-.+.+ .+.++.+.++|++.|.....
T Consensus 23 ~i~~~L~~~GV~~I-Evg~~~~~--~~~--p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-~~~i~~a~~~g~~~i~i~~~ 96 (265)
T cd03174 23 EIAEALDEAGVDSI-EVGSGASP--KAV--PQMEDDWEVLRAIRKLVPNVKLQALVRNR-EKGIERALEAGVDEVRIFDS 96 (265)
T ss_pred HHHHHHHHcCCCEE-EeccCcCc--ccc--ccCCCHHHHHHHHHhccCCcEEEEEccCc-hhhHHHHHhCCcCEEEEEEe
Confidence 56788889999976 542 1111 000 00122356778887765 56665544422 57789999999999953222
Q ss_pred CC---------------ch---hHHHHHHhcCCCCcEEE-ecCC--------HHHHHHHHHhCCCEEEEcCCCCCcchHH
Q 021609 124 LT---------------PA---DEENHINKHNFRIPFVC-GCRN--------LGEALRRIREGAAMIRTKGEAGTGNIIE 176 (310)
Q Consensus 124 ~~---------------~~---~~~~~i~~~~~~i~~~v-~~~t--------~~ea~~~~~~Gad~V~v~g~~~~~~~~~ 176 (310)
.+ .. +..+.+++.+..+.+.+ ++.. .+-++++.++|++.|.+.-..+..
T Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~---- 172 (265)
T cd03174 97 ASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLA---- 172 (265)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCc----
Confidence 11 12 22334444444433333 2333 233455667888888764322111
Q ss_pred HHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC-CCEEEe--CCCCCCCHHHHHHHHHcCCCEEE
Q 021609 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR-LPVVHF--AAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 177 ~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~-iPVi~i--A~GGI~t~~d~~~~l~~GadgV~ 250 (310)
+|+++ .+++..+++..+ +|+-+= -.=|.. ..+...++.+||+.|=
T Consensus 173 ------------------~P~~v----------~~li~~l~~~~~~~~~~~H~Hn~~gla-~an~laA~~aG~~~id 220 (265)
T cd03174 173 ------------------TPEEV----------AELVKALREALPDVPLGLHTHNTLGLA-VANSLAALEAGADRVD 220 (265)
T ss_pred ------------------CHHHH----------HHHHHHHHHhCCCCeEEEEeCCCCChH-HHHHHHHHHcCCCEEE
Confidence 11111 334555555433 555310 122553 6777788899988764
No 399
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=94.16 E-value=0.91 Score=41.78 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=72.4
Q ss_pred cHHHHHHHHHcCCCEEE----eCCC---------CCchhHHHHHHhcCCCCcEEEec--CCHHHHHHHHHhCCCEEEEcC
Q 021609 103 HFVEAQILEAIGIDYVD----ESEV---------LTPADEENHINKHNFRIPFVCGC--RNLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 103 ~~~~a~~~~~aGad~Vi----~~~~---------~~~~~~~~~i~~~~~~i~~~v~~--~t~~ea~~~~~~Gad~V~v~g 167 (310)
..+++++++++||=.|. .+.+ .+..+.++.+++ ..++|++.=+ ....|++.+.++|+|+|.-
T Consensus 17 ~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~-~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDa-- 93 (283)
T cd04727 17 NAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMD-AVSIPVMAKVRIGHFVEAQILEALGVDMIDE-- 93 (283)
T ss_pred CHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHH-hCCCCeEEeeehhHHHHHHHHHHcCCCEEec--
Confidence 34778888888888873 2211 233444555544 2467766543 3478999999999999941
Q ss_pred CCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCC
Q 021609 168 EAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD 247 (310)
Q Consensus 168 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gad 247 (310)
|.. ..+..+++..++...++|++ .+++|.+++..+.++|||
T Consensus 94 ---T~r--------------------------------~rP~~~~~~~iK~~~~~l~M----AD~stleEal~a~~~Gad 134 (283)
T cd04727 94 ---SEV--------------------------------LTPADEEHHIDKHKFKVPFV----CGARNLGEALRRISEGAA 134 (283)
T ss_pred ---cCC--------------------------------CCcHHHHHHHHHHHcCCcEE----ccCCCHHHHHHHHHCCCC
Confidence 110 12224456666664588998 699999999999999999
Q ss_pred EEEEcccc
Q 021609 248 GVFVGSGV 255 (310)
Q Consensus 248 gV~VGsai 255 (310)
-| |+-+
T Consensus 135 ~I--~TTl 140 (283)
T cd04727 135 MI--RTKG 140 (283)
T ss_pred EE--EecC
Confidence 76 5544
No 400
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=94.11 E-value=4.2 Score=36.56 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=103.9
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC-
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~- 122 (310)
+.|..++++||++| +.|. +|.|. -..+++..+++.+..|+=+-... ..+..+.+.+.-.|.|. .++
T Consensus 28 ~aA~~a~~aGAdgITvHlR---eDrRH-------I~d~Dv~~L~~~~~~~lNlE~a~-~~em~~ia~~~kP~~vtLVPE~ 96 (239)
T PRK05265 28 RAALIAEQAGADGITVHLR---EDRRH-------IRDRDVRLLRETLKTELNLEMAA-TEEMLDIALEVKPHQVTLVPEK 96 (239)
T ss_pred HHHHHHHHcCCCEEEecCC---CCccc-------CCHHHHHHHHHhcCCCEEeccCC-CHHHHHHHHHCCCCEEEECCCC
Confidence 67888899999999 6773 12222 12578888888777766544332 34678889999999984 332
Q ss_pred --------CCC-------chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 123 --------VLT-------PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 123 --------~~~-------~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
++. ..+.++.++..+..+..+++ .+.+....+.+.|+|.|-+|...|...
T Consensus 97 r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid-P~~~qi~~A~~~GAd~VELhTG~yA~a-------------- 161 (239)
T PRK05265 97 REELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID-PDPEQIEAAAEVGADRIELHTGPYADA-------------- 161 (239)
T ss_pred CCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcCEEEEechhhhcC--------------
Confidence 111 22334444444555666776 477788888899999998874322110
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEcccccc
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFK 257 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~ 257 (310)
+..... +... .+...........+-|- |+-|+ +.+++..+.. -+..-+-+|-+|+.
T Consensus 162 ---~~~~~~-------~el~-~~~~aa~~a~~lGL~Vn--AGHgL-ny~Nv~~i~~ip~i~EvnIGHsiia 218 (239)
T PRK05265 162 ---KTEAEA-------AELE-RIAKAAKLAASLGLGVN--AGHGL-NYHNVKPIAAIPGIEELNIGHAIIA 218 (239)
T ss_pred ---CCcchH-------HHHH-HHHHHHHHHHHcCCEEe--cCCCC-CHHhHHHHhhCCCCeEEccCHHHHH
Confidence 000000 0000 01111111112355565 88898 7999988765 47889999988884
No 401
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=94.10 E-value=5.5 Score=37.97 Aligned_cols=188 Identities=13% Similarity=0.085 Sum_probs=103.2
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccC-cHHHHHHHHHcC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIG-HFVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~-~~~~a~~~~~aG 114 (310)
++.+.+. .+++++.+..-|+++.+. ..+. .|.. .....++.+.+.. .+||.+.+--+ .++.+..+.++|
T Consensus 24 N~~n~e~~~avi~AAEe~~sPvIlq~s~~--~~~~-~g~~--~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~G 98 (347)
T PRK13399 24 NVNNMEQILAIMEAAEATDSPVILQASRG--ARKY-AGDA--MLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSG 98 (347)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEECCcc--hhhh-CCHH--HHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcC
Confidence 4455654 445567777766666321 1111 1110 0123445555566 59999875433 568889999999
Q ss_pred CCEEE--eCCCC------Cch-------hHHHHHHhcCCCCc--E--E-----------------------EecCCHHHH
Q 021609 115 IDYVD--ESEVL------TPA-------DEENHINKHNFRIP--F--V-----------------------CGCRNLGEA 152 (310)
Q Consensus 115 ad~Vi--~~~~~------~~~-------~~~~~i~~~~~~i~--~--~-----------------------v~~~t~~ea 152 (310)
.+-|- .+... +.+ ++.++....+..+. + + ..-+++++|
T Consensus 99 FtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA 178 (347)
T PRK13399 99 FTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQA 178 (347)
T ss_pred CCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHHH
Confidence 99993 44321 122 23333322221000 0 0 013467777
Q ss_pred HHHH-HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeeccc-ChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCC
Q 021609 153 LRRI-REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNM-DDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAA 229 (310)
Q Consensus 153 ~~~~-~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~-~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~ 229 (310)
.+-. +.|+|.+.+.-.+ -| ..++.. .++ ...-.++.++++++.+ ++|+++=.+
T Consensus 179 ~~Fv~~TgvD~LAvaiGt--~H---------------G~Yk~~~~p~-------~~~L~~drl~eI~~~v~~vPLVLHGg 234 (347)
T PRK13399 179 VDFVQRTGVDALAIAIGT--SH---------------GAYKFTRKPD-------GDILAIDRIEEIHARLPNTHLVMHGS 234 (347)
T ss_pred HHHHHHHCcCEEhhhhcc--cc---------------CCcCCCCCCC-------hhhccHHHHHHHHhhcCCCCEEEeCC
Confidence 7755 4588877643211 01 011100 000 0113478899998887 699885434
Q ss_pred CCCC--------------------CHHHHHHHHHcCCCEEEEcccccc
Q 021609 230 GGVA--------------------TPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 230 GGI~--------------------t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.|+. ..+++.++++.|..=|=++|.+-.
T Consensus 235 SGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~ 282 (347)
T PRK13399 235 SSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRL 282 (347)
T ss_pred CCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHH
Confidence 4432 148899999999999999998864
No 402
>PTZ00333 triosephosphate isomerase; Provisional
Probab=94.09 E-value=1.5 Score=40.05 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=28.4
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEcccccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFK 257 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~ 257 (310)
++||+ -+|+| +++++.+++ ..+.||++||++-++
T Consensus 207 ~~~IL--YGGSV-~~~N~~~l~~~~~vDG~LvG~asl~ 241 (255)
T PTZ00333 207 ATRII--YGGSV-NEKNCKELIKQPDIDGFLVGGASLK 241 (255)
T ss_pred cceEE--EcCCC-CHHHHHHHhcCCCCCEEEEehHhhh
Confidence 57888 47888 688888877 679999999999996
No 403
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.01 E-value=0.45 Score=43.87 Aligned_cols=120 Identities=17% Similarity=0.123 Sum_probs=69.1
Q ss_pred HHHHHHHHcCCcEEEeccCC--cccccccCCCCCCCCHHHHHHHHhhc----CcceeeccccC---------cHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERV--PADIRSQGGVARMSDPQLIKEIKQSV----TIPVMAKARIG---------HFVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~--~~~~~~~~G~~~~~~~~~i~~i~~~~----~iPv~vk~~~~---------~~~~a~~~ 110 (310)
+.++.++++|+.++ +++.+ |+......|.......+.+.+|+... +-++++.-|.. -.+.++.+
T Consensus 97 rtV~~~~~aG~agi-~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY 175 (289)
T COG2513 97 RTVRELEQAGAAGI-HIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAY 175 (289)
T ss_pred HHHHHHHHcCccee-eeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHH
Confidence 56888999999997 77633 22212112333344456777776442 44555543321 14678999
Q ss_pred HHcCCCEEEeCCCCCchhHHHHHHhcC-CCCcEEEe-cCC-HHHHHHHHHhCCCEEEEc
Q 021609 111 EAIGIDYVDESEVLTPADEENHINKHN-FRIPFVCG-CRN-LGEALRRIREGAAMIRTK 166 (310)
Q Consensus 111 ~~aGad~Vi~~~~~~~~~~~~~i~~~~-~~i~~~v~-~~t-~~ea~~~~~~Gad~V~v~ 166 (310)
.++|||.|......++.++..+.+... +-..++.. -+| .-.+..+.++|++.|...
T Consensus 176 ~eAGAD~if~~al~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~ 234 (289)
T COG2513 176 VEAGADAIFPEALTDLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAELGVKRVSYG 234 (289)
T ss_pred HHcCCcEEccccCCCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHhcCceEEEEC
Confidence 999999997555445666666665532 11222222 121 123456778899988753
No 404
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=93.92 E-value=2.5 Score=38.60 Aligned_cols=177 Identities=18% Similarity=0.190 Sum_probs=92.8
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeC
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~ 121 (310)
+.|+...++||+.+ -.. |-.. .-.|.|.. ..-+..++++++.+++|++.-.. +..+++...+. +|.+ +++
T Consensus 63 ~~A~~vk~~Ga~~l-RGgafKPRTS-PYsFQGlg-e~gL~~l~~a~~~~Gl~vvtEvm--~~~~~e~~~~y-~DilqvGA 136 (286)
T COG2876 63 ETAESVKAAGAKAL-RGGAFKPRTS-PYSFQGLG-EEGLKLLKRAADETGLPVVTEVM--DVRDVEAAAEY-ADILQVGA 136 (286)
T ss_pred HHHHHHHHcchhhc-cCCcCCCCCC-cccccccC-HHHHHHHHHHHHHcCCeeEEEec--CHHHHHHHHhh-hhHHHhcc
Confidence 45778889999976 221 1100 01111211 12256777788889999986433 22344444444 5555 344
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEe---cCCHHHHHHHHHh----CCCEEEEcCCCCCcchHHHHHHHHhhccceEeeccc
Q 021609 122 EVLTPADEENHINKHNFRIPFVCG---CRNLGEALRRIRE----GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~---~~t~~ea~~~~~~----Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~ 194 (310)
.-+..-++.+.+.+ .+.+++.. .+|.+|-..++++ |..-|.+--++ +|-+...
T Consensus 137 RNMQNF~LLke~G~--~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERG------------------IRtfe~~ 196 (286)
T COG2876 137 RNMQNFALLKEVGR--QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERG------------------IRTFEKA 196 (286)
T ss_pred cchhhhHHHHHhcc--cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecc------------------ccccccc
Confidence 44444444444332 34555553 5678887766553 44333221111 1111111
Q ss_pred ChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHH-----HHHHHHcCCCEEEEccccccCCCHH
Q 021609 195 DDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD-----AAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d-----~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
++ ..-+...+..+++.+++||++-.+.+-. -.+ +..++.+||||+++= =++||.
T Consensus 197 TR---------ntLDi~aV~~~kq~THLPVivDpSH~~G-rr~lv~pla~AA~AaGAdglmiE----VHp~P~ 255 (286)
T COG2876 197 TR---------NTLDISAVPILKQETHLPVIVDPSHATG-RRDLVEPLAKAAIAAGADGLMIE----VHPDPE 255 (286)
T ss_pred cc---------ceechHHHHHHHhhcCCCEEECCCCccc-chhhHHHHHHHHHhccCCeeEEE----ecCCcc
Confidence 11 1234566777888899999975444432 333 334457899999863 245664
No 405
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.88 E-value=5.1 Score=36.74 Aligned_cols=174 Identities=16% Similarity=0.159 Sum_probs=100.5
Q ss_pred HHHHHHHHcCCcEEE-ec-cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeCC
Q 021609 46 EQARVAEEAGACAVM-AL-ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~-~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~~ 122 (310)
+.|+.+.+.|+..+. .. .|-.. ...+.|.. ..-++.++++++..++|+..-.. +...++.+.+. +|.+ +.+.
T Consensus 45 ~~A~~lk~~g~~~~r~~~~kpRTs-~~s~~G~g-~~gl~~l~~~~~~~Gl~~~te~~--d~~~~~~l~~~-vd~~kIga~ 119 (266)
T PRK13398 45 KVAEKLKELGVHMLRGGAFKPRTS-PYSFQGLG-EEGLKILKEVGDKYNLPVVTEVM--DTRDVEEVADY-ADMLQIGSR 119 (266)
T ss_pred HHHHHHHHcCCCEEEEeeecCCCC-CCccCCcH-HHHHHHHHHHHHHcCCCEEEeeC--ChhhHHHHHHh-CCEEEECcc
Confidence 578888999998661 11 11110 00111110 12245677777788999986443 23556667677 8888 4666
Q ss_pred CCCchhHHHHHHhcCCCCcEEEec--C-CHHHHHHHHH----hCC-CEEEEcC-C-CCCcchHHHHHHHHhhccceEeec
Q 021609 123 VLTPADEENHINKHNFRIPFVCGC--R-NLGEALRRIR----EGA-AMIRTKG-E-AGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~--~-t~~ea~~~~~----~Ga-d~V~v~g-~-~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
.+...++.+.+.+ .+.++++.- . +.+|...+.+ .|. +++.++- . +++++ +
T Consensus 120 ~~~n~~LL~~~a~--~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y------------------~ 179 (266)
T PRK13398 120 NMQNFELLKEVGK--TKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETY------------------T 179 (266)
T ss_pred cccCHHHHHHHhc--CCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCC------------------C
Confidence 6677777777643 567777763 2 7788776653 355 3333331 1 11110 0
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCC----HHHHHHHHHcCCCEEEEccccc
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVAT----PADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t----~~d~~~~l~~GadgV~VGsai~ 256 (310)
+ ...++..+..+++...+||++.++=+++. +.....+..+||||+++=+-+.
T Consensus 180 ---~---------~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 180 ---R---------NTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred ---H---------HHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 0 11234456666666689998533444432 5667777889999999876555
No 406
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.80 E-value=0.45 Score=42.07 Aligned_cols=80 Identities=26% Similarity=0.291 Sum_probs=56.2
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccCC-cccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCE
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALERV-PADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDY 117 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~~-~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~ 117 (310)
+..+.+++.+..+.+.|++.+ ..++. .+.... .......+.++++++.+++|+++...+...++++.+.+.|+|+
T Consensus 127 iv~v~t~~ea~~a~~~G~d~i-~~~~~g~t~~~~---~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~Gadg 202 (219)
T cd04729 127 MADISTLEEALNAAKLGFDII-GTTLSGYTEETA---KTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADA 202 (219)
T ss_pred EEECCCHHHHHHHHHcCCCEE-EccCcccccccc---CCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCE
Confidence 456778888899999999976 33210 000000 0112346889999988899999988876678899999999999
Q ss_pred EE-eCC
Q 021609 118 VD-ESE 122 (310)
Q Consensus 118 Vi-~~~ 122 (310)
|. ++.
T Consensus 203 V~vGsa 208 (219)
T cd04729 203 VVVGSA 208 (219)
T ss_pred EEEchH
Confidence 96 443
No 407
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.78 E-value=1.2 Score=39.70 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=61.2
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHH---hhcCcceeecccc----------C-cHHH-HHH
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIK---QSVTIPVMAKARI----------G-HFVE-AQI 109 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~---~~~~iPv~vk~~~----------~-~~~~-a~~ 109 (310)
..++.+.+.||+++ ++++ .+. .......+.+++++ +.+++|+++.... . .... ++.
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~-------~~~-~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~ 151 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVY-------VGS-EEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARI 151 (235)
T ss_pred cCHHHHHHCCCCEEEEEEe-------cCC-chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHH
Confidence 34778889999987 4553 110 00001123444443 4579999986543 1 1122 456
Q ss_pred HHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEE-e---cCCHHH----HHHHHHhCCCEEEEc
Q 021609 110 LEAIGIDYVDESEVLTPADEENHINKHNFRIPFVC-G---CRNLGE----ALRRIREGAAMIRTK 166 (310)
Q Consensus 110 ~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v-~---~~t~~e----a~~~~~~Gad~V~v~ 166 (310)
+.++|+|+|-.........+.+..+. ..+++.+ + ..|.++ +..+.+.|++.+.+.
T Consensus 152 a~~~GaD~Ik~~~~~~~~~~~~i~~~--~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 152 GAELGADIVKTKYTGDAESFKEVVEG--CPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred HHHHCCCEEEecCCCCHHHHHHHHhc--CCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 88899999943322223344444332 3344444 2 245544 677788999988764
No 408
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=93.75 E-value=0.47 Score=43.00 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=52.0
Q ss_pred EecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCC
Q 021609 144 CGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLP 223 (310)
Q Consensus 144 v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iP 223 (310)
+.+.+++++..+.+.|+|-|-+-.....| +.+|+..+++.+++..++|
T Consensus 6 vcv~s~~~a~~A~~~GAdRiELc~~L~~G--------------------------------GlTPS~g~i~~~~~~~~ip 53 (248)
T PRK11572 6 ICCYSMECALTAQQAGADRIELCAAPKEG--------------------------------GLTPSLGVLKSVRERVTIP 53 (248)
T ss_pred EEECCHHHHHHHHHcCCCEEEEccCcCCC--------------------------------CcCCCHHHHHHHHHhcCCC
Confidence 45678999999999999988654321111 2356677888888777888
Q ss_pred EEEe--CCCC-C-CCH-------HHHHHHHHcCCCEEEEc
Q 021609 224 VVHF--AAGG-V-ATP-------ADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 224 Vi~i--A~GG-I-~t~-------~d~~~~l~~GadgV~VG 252 (310)
|.+. .-|| . .|. +|+..+.++|+|||++|
T Consensus 54 v~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G 93 (248)
T PRK11572 54 VHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTG 93 (248)
T ss_pred eEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 7653 2222 2 222 45666677899999998
No 409
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=93.71 E-value=0.73 Score=40.45 Aligned_cols=93 Identities=22% Similarity=0.185 Sum_probs=65.7
Q ss_pred CcccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
.-.|.++++++.+..+.++|+|-+ .-|..- +. ..-.....++..++++.+ .+.+|++-.+++.-+.++.+.+.|
T Consensus 128 ~l~MAD~St~ee~l~a~~~G~D~IGTTLsGY-T~---~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~G 202 (229)
T COG3010 128 QLAMADCSTFEEGLNAHKLGFDIIGTTLSGY-TG---YTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIG 202 (229)
T ss_pred cEEEeccCCHHHHHHHHHcCCcEEecccccc-cC---CCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhC
Confidence 346889999999999999999976 222100 00 000112456789998887 789999998888778999999999
Q ss_pred CCEEE-eCCCCCchhHHHHH
Q 021609 115 IDYVD-ESEVLTPADEENHI 133 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i 133 (310)
|+.|+ ++...-|.++-.++
T Consensus 203 a~aVvVGsAITRp~~It~~F 222 (229)
T COG3010 203 ADAVVVGSAITRPEEITQWF 222 (229)
T ss_pred CeEEEECcccCCHHHHHHHH
Confidence 99997 44444455554444
No 410
>PLN02429 triosephosphate isomerase
Probab=93.60 E-value=1 Score=42.33 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=31.8
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHH
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~ 264 (310)
+++|+ -+|+| +++++.+++ ..+.||++||++.++++++...
T Consensus 263 ~irIL--YGGSV-~~~N~~el~~~~diDG~LVGgASL~~~~F~~I 304 (315)
T PLN02429 263 KTRII--YGGSV-NGGNSAELAKEEDIDGFLVGGASLKGPEFATI 304 (315)
T ss_pred CceEE--EcCcc-CHHHHHHHhcCCCCCEEEeecceecHHHHHHH
Confidence 57888 47888 578877776 6799999999999975554433
No 411
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=93.56 E-value=6.2 Score=37.59 Aligned_cols=188 Identities=13% Similarity=0.060 Sum_probs=104.5
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccC-cHHHHHHHHHcC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIG-HFVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~-~~~~a~~~~~aG 114 (310)
++.+.+. .+++++.+..-|+++.+. ..+. .|. ......++.+.+... +||.+.+--+ .++.+..+.++|
T Consensus 22 N~~n~e~~~aii~AAEe~~sPvIlq~s~~--~~~~-~g~--~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~G 96 (347)
T TIGR01521 22 NVNNMEQMRAIMEAADKTDSPVILQASRG--ARSY-AGA--PFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLG 96 (347)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECCcc--hhhh-CCH--HHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcC
Confidence 4455554 445577777766666321 1111 111 001234555556664 9999875433 568889999999
Q ss_pred CCEEE--eCCC------CCch-------hHHHHHHhcCC------C-C---c-----------E------EEecCCHHHH
Q 021609 115 IDYVD--ESEV------LTPA-------DEENHINKHNF------R-I---P-----------F------VCGCRNLGEA 152 (310)
Q Consensus 115 ad~Vi--~~~~------~~~~-------~~~~~i~~~~~------~-i---~-----------~------~v~~~t~~ea 152 (310)
.+-|- .+.. ++.+ ++.++....+. | + . . -...+++++|
T Consensus 97 FtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA 176 (347)
T TIGR01521 97 FTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEA 176 (347)
T ss_pred CCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHH
Confidence 99993 4432 1322 33333332211 1 0 0 0 0013467788
Q ss_pred HHHH-HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeeccc-ChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCC
Q 021609 153 LRRI-REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNM-DDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAA 229 (310)
Q Consensus 153 ~~~~-~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~-~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~ 229 (310)
.+-. +.|+|.+.+.-.+--| .++.. .+. ...-+++.++++++.+ ++|+++=.+
T Consensus 177 ~~Fv~~TgvD~LAvaiGt~HG-----------------~Yk~~~~p~-------~~~Ld~~rL~eI~~~v~~vPLVLHGg 232 (347)
T TIGR01521 177 ADFVKKTKVDALAVAIGTSHG-----------------AYKFTRKPT-------GEVLAIQRIEEIHARLPDTHLVMHGS 232 (347)
T ss_pred HHHHHHHCcCEEehhcccccC-----------------CcCCCCCCC-------hhhcCHHHHHHHHccCCCCCEEEeCC
Confidence 8755 4688887654211100 11100 000 0013578899998887 699885333
Q ss_pred CCCC--------------------CHHHHHHHHHcCCCEEEEcccccc
Q 021609 230 GGVA--------------------TPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 230 GGI~--------------------t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.|+. ..+++.++++.|..=|=++|.+-.
T Consensus 233 SG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~ 280 (347)
T TIGR01521 233 SSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRL 280 (347)
T ss_pred CCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHH
Confidence 4432 148999999999999999998874
No 412
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=93.49 E-value=0.35 Score=42.47 Aligned_cols=77 Identities=27% Similarity=0.421 Sum_probs=46.1
Q ss_pred EecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCC
Q 021609 144 CGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLP 223 (310)
Q Consensus 144 v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iP 223 (310)
+.+.+.+++..+.+.|+|-|-+......+ +.+|+..+++.+++..++|
T Consensus 5 vcv~s~~~a~~A~~~GAdRiELc~~l~~G--------------------------------GlTPS~g~i~~~~~~~~ip 52 (201)
T PF03932_consen 5 VCVESLEDALAAEAGGADRIELCSNLEVG--------------------------------GLTPSLGLIRQAREAVDIP 52 (201)
T ss_dssp EEESSHHHHHHHHHTT-SEEEEEBTGGGT---------------------------------B---HHHHHHHHHHTTSE
T ss_pred EEeCCHHHHHHHHHcCCCEEEECCCccCC--------------------------------CcCcCHHHHHHHHhhcCCc
Confidence 45678999999999999988765321100 2355677777777777788
Q ss_pred EEEe--CCCC--CCCH-------HHHHHHHHcCCCEEEEc
Q 021609 224 VVHF--AAGG--VATP-------ADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 224 Vi~i--A~GG--I~t~-------~d~~~~l~~GadgV~VG 252 (310)
+.+. .-+| +.|. +|+..+.++|+||+++|
T Consensus 53 v~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG 92 (201)
T PF03932_consen 53 VHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFG 92 (201)
T ss_dssp EEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE-
T ss_pred eEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEE
Confidence 7653 3344 1222 45666677899999988
No 413
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=93.49 E-value=0.2 Score=47.94 Aligned_cols=63 Identities=25% Similarity=0.319 Sum_probs=44.8
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc----cccccCCCHHHHHHHHHHHHh
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG----SGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG----sai~~a~dp~~~a~~l~~~i~ 273 (310)
..|+.++++++..++||++ -||.+++|+.++.++|++++.|+ +.+=-...+.....++.+++.
T Consensus 212 ~~w~~i~~~~~~~~~pviv---Kgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~ 278 (356)
T PF01070_consen 212 LTWDDIEWIRKQWKLPVIV---KGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVG 278 (356)
T ss_dssp -SHHHHHHHHHHCSSEEEE---EEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhcccCCceEE---EecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhc
Confidence 4588899999989999984 78999999999999999999997 333333344455555555553
No 414
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=93.42 E-value=6.1 Score=36.09 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCC---HHHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSD---PQLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~---~~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
+.+..+.+.|+++++.+. .. .+ +. .+.. .+.++.+++.+ .+||++...-.. .+.++.+.++|+|
T Consensus 22 ~~i~~l~~~Gv~gi~~~G-st---GE--~~-~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLG-TT---GE--AP-TLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGAD 94 (281)
T ss_pred HHHHHHHHcCCCEEEECC-CC---cc--cc-cCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCC
Confidence 567788889999984331 10 00 11 1111 23444445544 689998765432 3567788899999
Q ss_pred EEE-eCCC---CCchhHHHHHHh
Q 021609 117 YVD-ESEV---LTPADEENHINK 135 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~~ 135 (310)
++. .+.. .+..++.++.+.
T Consensus 95 ~v~v~pP~y~~~~~~~~~~~~~~ 117 (281)
T cd00408 95 GVLVVPPYYNKPSQEGIVAHFKA 117 (281)
T ss_pred EEEECCCcCCCCCHHHHHHHHHH
Confidence 996 3322 234555555443
No 415
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=93.27 E-value=1.1 Score=42.89 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=37.5
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
++||+ -+|+| +++++.+++ ..+.||++||++-++++++....+.+.+.+
T Consensus 213 ~v~IL--YGGSV-~~~N~~~l~~~~~iDG~LVG~asl~~~~f~~Ii~~~~~~~ 262 (355)
T PRK14905 213 KIPVL--YGGSV-NLENANELIMKPHIDGLFIGRSAWDAQCFHALIADALKAL 262 (355)
T ss_pred ceeEE--EeCcC-CHHHHHHHhcCCCCCEEEechhhccHHHHHHHHHHHHHhc
Confidence 57888 46888 588888877 678999999999998777766655555543
No 416
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=93.26 E-value=0.76 Score=41.57 Aligned_cols=113 Identities=15% Similarity=0.158 Sum_probs=62.6
Q ss_pred CCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHH
Q 021609 137 NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216 (310)
Q Consensus 137 ~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i 216 (310)
..++.++.++.+.+.+..+.+.|++++++... + ...+.+++.+
T Consensus 67 ~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~----d---------------------------------l~n~~lL~~~ 109 (241)
T PF03102_consen 67 ELGIDFFSTPFDEESVDFLEELGVPAYKIASG----D---------------------------------LTNLPLLEYI 109 (241)
T ss_dssp HTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GG----G---------------------------------TT-HHHHHHH
T ss_pred HcCCEEEECCCCHHHHHHHHHcCCCEEEeccc----c---------------------------------ccCHHHHHHH
Confidence 35788888889998888888999999998632 1 2246678888
Q ss_pred hhcCCCCEEEeCCCCCCCHHHHHHHHH----cCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccch
Q 021609 217 KQLGRLPVVHFAAGGVATPADAAMMMQ----LGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAM 292 (310)
Q Consensus 217 ~~~~~iPVi~iA~GGI~t~~d~~~~l~----~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~ 292 (310)
.+ .+.||| .+-|..+.+++.++++ .|..-+++=-.+-.=|-|..- .+-..+..++..|+
T Consensus 110 A~-tgkPvI--lSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~-----------~NL~~i~~L~~~f~--- 172 (241)
T PF03102_consen 110 AK-TGKPVI--LSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPED-----------VNLRVIPTLKERFG--- 172 (241)
T ss_dssp HT-T-S-EE--EE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG-------------TTHHHHHHHHST---
T ss_pred HH-hCCcEE--EECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHH-----------cChHHHHHHHHhcC---
Confidence 77 688998 4677789999887763 366655543333321222211 11234556666777
Q ss_pred hcccCccchhh
Q 021609 293 VGLNLSDHKVE 303 (310)
Q Consensus 293 ~~~~~~~~~~~ 303 (310)
.-+|.|||...
T Consensus 173 ~~vG~SDHt~g 183 (241)
T PF03102_consen 173 VPVGYSDHTDG 183 (241)
T ss_dssp SEEEEEE-SSS
T ss_pred CCEEeCCCCCC
Confidence 44477887653
No 417
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=93.24 E-value=9.4 Score=37.76 Aligned_cols=184 Identities=18% Similarity=0.186 Sum_probs=100.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--------CCCCHHHHHHHHhh-cCcceeeccc----cCc--------H
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--------RMSDPQLIKEIKQS-VTIPVMAKAR----IGH--------F 104 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--------~~~~~~~i~~i~~~-~~iPv~vk~~----~~~--------~ 104 (310)
+.|..+.++|...| +.- +|.. .....+.++.+++. -++++..-.+ .++ .
T Consensus 30 ~ia~~Ld~~Gv~~I-E~~---------ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~ 99 (448)
T PRK12331 30 PILEKLDNAGYHSL-EMW---------GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVE 99 (448)
T ss_pred HHHHHHHHcCCCEE-Eec---------CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHH
Confidence 57888999999976 431 1110 11234677778766 4677653222 121 3
Q ss_pred HHHHHHHHcCCCEEEeCCCC----CchhHHHHHHhcCCCCcEEEec-----CCH----HHHHHHHHhCCCEEEEcCCCCC
Q 021609 105 VEAQILEAIGIDYVDESEVL----TPADEENHINKHNFRIPFVCGC-----RNL----GEALRRIREGAAMIRTKGEAGT 171 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~~----~~~~~~~~i~~~~~~i~~~v~~-----~t~----~ea~~~~~~Gad~V~v~g~~~~ 171 (310)
++++.+.++|+|.+-+.+.+ ...+.++..++.+..+...++. ++. +-++++.++|+|.|.+.=..+.
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~ 179 (448)
T PRK12331 100 SFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGI 179 (448)
T ss_pred HHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 56788999999998432222 2334455555554332222221 222 3455667789998876422221
Q ss_pred cchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEe--CCCCCCCHHHHHHHHHcCCCEE
Q 021609 172 GNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHF--AAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 172 ~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~i--A~GGI~t~~d~~~~l~~GadgV 249 (310)
.. |.. ..++++.+++..++|+-+= -.-|. ...+..+++++|||.|
T Consensus 180 l~----------------------P~~----------v~~lv~alk~~~~~pi~~H~Hnt~Gl-A~AN~laAieaGad~v 226 (448)
T PRK12331 180 LT----------------------PYV----------AYELVKRIKEAVTVPLEVHTHATSGI-AEMTYLKAIEAGADII 226 (448)
T ss_pred CC----------------------HHH----------HHHHHHHHHHhcCCeEEEEecCCCCc-HHHHHHHHHHcCCCEE
Confidence 11 111 1346666666556676420 35677 4677778899999977
Q ss_pred EEccccc--cCCCHHHHHHHHHHHHhc
Q 021609 250 FVGSGVF--KSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 250 ~VGsai~--~a~dp~~~a~~l~~~i~~ 274 (310)
=..-.=+ ++.||. .+.++..++.
T Consensus 227 D~sv~glg~gaGN~~--tE~lv~~L~~ 251 (448)
T PRK12331 227 DTAISPFAGGTSQPA--TESMVAALQD 251 (448)
T ss_pred EeeccccCCCcCCHh--HHHHHHHHHh
Confidence 5432211 234543 4556655543
No 418
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=93.20 E-value=1.8 Score=43.01 Aligned_cols=165 Identities=11% Similarity=0.170 Sum_probs=83.7
Q ss_pred cCcceeeccccCcH----HHHHHHH-HcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEE
Q 021609 91 VTIPVMAKARIGHF----VEAQILE-AIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRT 165 (310)
Q Consensus 91 ~~iPv~vk~~~~~~----~~a~~~~-~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v 165 (310)
.++|+++....++. ..++... ..|+|.|+.+.-+....+...+...+.++.+.+-..++. +....++. .
T Consensus 87 ~~~~vI~DaKrgDI~T~~~yA~a~f~~~~aDAiTv~pymG~Dsl~pfl~~~~kgvfvL~~tSNpg-a~~~Q~~~-----~ 160 (477)
T PRK05500 87 PDIPIILDAKHGDLNTSTIFAKTIFEQWQVDAVTLSPYAGQDHVAPFLVYPDKGVFILCHTSNPG-AIALQEYP-----T 160 (477)
T ss_pred cCCeEEEEecccChHHHHHHHHHHHhhcCCCEEEECCccCccchHHHHhcCCCcEEEEEeCCCcC-HHHHhhcc-----c
Confidence 47889986555532 2345555 499999976655555555555543334455555433331 11111110 1
Q ss_pred cCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc-HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHH
Q 021609 166 KGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQ 243 (310)
Q Consensus 166 ~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~ 243 (310)
.+. +...+..+.+... .. ++++ ..-.+.+ .+.++.+++. .+.++++. +=|- -..++.+++.
T Consensus 161 ~g~---~ly~~v~~~~~~~-~~--------~~~~---g~VvGAT~p~~~~~iR~~~p~~~iL~P-GiGA-QGg~~~~~~~ 223 (477)
T PRK05500 161 PEN---PFYLQVVKEAKTW-GT--------PEQL---GLEVGTTNPEVLAKIRQIAPERLILLR-SIWA-EKGNLNQILT 223 (477)
T ss_pred CCC---cHHHHHHHHHHHh-CC--------CCce---EEEECCCChHHHHHHHHhCCCCEEEcc-cccc-CCCCHHHHHH
Confidence 111 1100111111110 00 0000 0001222 3446666654 44556542 1121 1223444466
Q ss_pred cCCC------EEEEccccccCCCHHHHHHHHHHHHhccCCh
Q 021609 244 LGCD------GVFVGSGVFKSGDPVKRAQAIVRAVTHYSDP 278 (310)
Q Consensus 244 ~Gad------gV~VGsai~~a~dp~~~a~~l~~~i~~~~~~ 278 (310)
.|.+ -+.+|++|+.++||...++++.+.++..+..
T Consensus 224 ~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~~i~~~~~~ 264 (477)
T PRK05500 224 AGLNSNGDGLLIPVPQDLLGAANLKEQVKSLREEINQIRQQ 264 (477)
T ss_pred hhcccCcCceEEEeCHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 7766 7899999999999999999999999876643
No 419
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=93.06 E-value=7.6 Score=37.33 Aligned_cols=45 Identities=24% Similarity=0.510 Sum_probs=32.2
Q ss_pred CCEEEeCCCCCCCHHHHHHHH-HcCCCE-EEEccccccCC-CHHHHHHHHHH
Q 021609 222 LPVVHFAAGGVATPADAAMMM-QLGCDG-VFVGSGVFKSG-DPVKRAQAIVR 270 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l-~~Gadg-V~VGsai~~a~-dp~~~a~~l~~ 270 (310)
.|+ .+||+ ++..+.+++ ..|.|- +.+|..++.++ .|..-+++|++
T Consensus 319 ~Pv---~sgG~-~~~~v~~l~~~~G~dv~~~~GGgi~gHp~g~~ag~~a~r~ 366 (367)
T cd08205 319 LPV---PSGGM-HPGRVPELYRDYGPDVILLAGGGILGHPDGAAAGVRAFRQ 366 (367)
T ss_pred eee---ccCCC-CHHHHHHHHHHhCCcEEEEcCchhcCCCCChHHHHHHHhc
Confidence 466 58998 689999988 468774 45688999877 55555555543
No 420
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=93.02 E-value=1.1 Score=44.66 Aligned_cols=199 Identities=21% Similarity=0.260 Sum_probs=102.7
Q ss_pred eeeeccCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHH----HHHHHHhhc
Q 021609 16 ITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQ----LIKEIKQSV 91 (310)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~----~i~~i~~~~ 91 (310)
.-+|+++.+-=.-|+.. .|+--..-+++.+.+..++|--+ +| +.||.- +.+ .++++....
T Consensus 23 ~v~TkfsrLtGr~Pill---aGMTPtTVdp~ivAAaAnAGhwa--EL--------AGGGq~---t~e~~~~~i~ql~~~l 86 (717)
T COG4981 23 KVSTKFSRLTGRSPILL---AGMTPTTVDPDIVAAAANAGHWA--EL--------AGGGQV---TEEIFTNAIEQLVSLL 86 (717)
T ss_pred EEeechhhhcCCCCeee---cCCCCCcCCHHHHHHHhcCCcee--ee--------cCCccc---CHHHHHHHHHHHHhcc
Confidence 33455555544444444 66655556788999999988553 55 233331 123 333332211
Q ss_pred --Ccceee----------ccccCcHHHHHHHHHcCC--CEEEeCCC-CCchhHHHHHHhc-CCCCcEEEe-cCCHHHHHH
Q 021609 92 --TIPVMA----------KARIGHFVEAQILEAIGI--DYVDESEV-LTPADEENHINKH-NFRIPFVCG-CRNLGEALR 154 (310)
Q Consensus 92 --~iPv~v----------k~~~~~~~~a~~~~~aGa--d~Vi~~~~-~~~~~~~~~i~~~-~~~i~~~v~-~~t~~ea~~ 154 (310)
+.-..+ ++.++-.-.++.+.+.|+ |+|+++.. .+.++..++++.. ..+++.++- .-+.+....
T Consensus 87 epG~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtIeqI~s 166 (717)
T COG4981 87 EPGRTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTIEQIRS 166 (717)
T ss_pred CCCccceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCCcHHHHHH
Confidence 111122 222222234566667554 55655544 3455556666553 234554432 444444333
Q ss_pred ---HHHhCCCE-EEEc--CCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhcCCCCEEEe
Q 021609 155 ---RIREGAAM-IRTK--GEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQLGRLPVVHF 227 (310)
Q Consensus 155 ---~~~~Gad~-V~v~--g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~~iPVi~i 227 (310)
.+.+...+ |.++ |...+|+- +.. +. .+-+..+.+++...++-++
T Consensus 167 vi~IAka~P~~pIilq~egGraGGHH------------------Swe---------Dld~llL~tYs~lR~~~NIvl~-- 217 (717)
T COG4981 167 VIRIAKANPTFPIILQWEGGRAGGHH------------------SWE---------DLDDLLLATYSELRSRDNIVLC-- 217 (717)
T ss_pred HHHHHhcCCCCceEEEEecCccCCcc------------------chh---------hcccHHHHHHHHHhcCCCEEEE--
Confidence 23333332 2222 22112220 000 11 1114567778877666665
Q ss_pred CCCCCCCHHHHHHHHH------cC-----CCEEEEccccccCC
Q 021609 228 AAGGVATPADAAMMMQ------LG-----CDGVFVGSGVFKSG 259 (310)
Q Consensus 228 A~GGI~t~~d~~~~l~------~G-----adgV~VGsai~~a~ 259 (310)
..|||.++++....+- .| +||+++|++.|-++
T Consensus 218 vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatK 260 (717)
T COG4981 218 VGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATK 260 (717)
T ss_pred ecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhh
Confidence 7999999999987651 23 79999999999754
No 421
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=92.95 E-value=0.49 Score=44.42 Aligned_cols=82 Identities=33% Similarity=0.338 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHH-HcCCCEEE-eC
Q 021609 45 PEQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILE-AIGIDYVD-ES 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~-~aGad~Vi-~~ 121 (310)
.+.++.++++|+++| .+. +... .+.....+.+.++++++.+++||++...+...++++.+. ..|+|+|. +.
T Consensus 150 ~~~a~~l~~~G~d~i-~vh~r~~~-----~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR 223 (319)
T TIGR00737 150 VEAARIAEDAGAQAV-TLHGRTRA-----QGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGR 223 (319)
T ss_pred HHHHHHHHHhCCCEE-EEEccccc-----ccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEECh
Confidence 377888999999988 332 1111 111112347889999999999999988887778887777 68999995 33
Q ss_pred CCCCchhHHHH
Q 021609 122 EVLTPADEENH 132 (310)
Q Consensus 122 ~~~~~~~~~~~ 132 (310)
..+..+.+...
T Consensus 224 ~~l~~P~l~~~ 234 (319)
T TIGR00737 224 GALGNPWLFRQ 234 (319)
T ss_pred hhhhCChHHHH
Confidence 33433334333
No 422
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=92.92 E-value=1.7 Score=36.46 Aligned_cols=110 Identities=22% Similarity=0.232 Sum_probs=64.1
Q ss_pred HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeCCC---
Q 021609 48 ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDESEV--- 123 (310)
Q Consensus 48 A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~--- 123 (310)
++.+.++|++++ +++.. .+.......+.++++++.+ +.|++++...........+.+.|+|.+.....
T Consensus 77 a~~~~~~g~d~v-~l~~~-------~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~ 148 (200)
T cd04722 77 AAAARAAGADGV-EIHGA-------VGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGG 148 (200)
T ss_pred HHHHHHcCCCEE-EEecc-------CCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCC
Confidence 467889999987 55310 0000000146777888777 89999887643211111268899999952211
Q ss_pred ---CCc-h---hHHHHHHhcCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEc
Q 021609 124 ---LTP-A---DEENHINKHNFRIPFVC--GCRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 124 ---~~~-~---~~~~~i~~~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~ 166 (310)
... . .....++ ...++++++ ++++.+++..+.+.|+|.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~-~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 149 GGGRDAVPIADLLLILAK-RGSKVPVIAGGGINDPEDAAEALALGADGVIVG 199 (200)
T ss_pred CCCccCchhHHHHHHHHH-hcCCCCEEEECCCCCHHHHHHHHHhCCCEEEec
Confidence 111 1 1222222 234555544 3788889999888899998763
No 423
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=92.68 E-value=3.3 Score=37.90 Aligned_cols=101 Identities=10% Similarity=0.060 Sum_probs=48.0
Q ss_pred cCCCHHHHHHHHHcCCcEEEeccCC-cccccccCC--CCCCCCHHHHHHHHhhcCcceeecc-ccC-c--H----HHH-H
Q 021609 41 DVVTPEQARVAEEAGACAVMALERV-PADIRSQGG--VARMSDPQLIKEIKQSVTIPVMAKA-RIG-H--F----VEA-Q 108 (310)
Q Consensus 41 ~~~~~~~A~~~~~~Ga~~i~~L~~~-~~~~~~~~G--~~~~~~~~~i~~i~~~~~iPv~vk~-~~~-~--~----~~a-~ 108 (310)
..=|+..|+.++++|++.|..=+.. ........+ ..+.......+.+++....|+++-+ .++ + . .-+ +
T Consensus 21 tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na~r 100 (263)
T TIGR00222 21 TAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNAAR 100 (263)
T ss_pred eccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHHHH
Confidence 3345678999999999987210100 000111000 1111112456667777555655532 221 1 1 223 3
Q ss_pred HHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEE
Q 021609 109 ILEAIGIDYVDESEVLTPADEENHINKHNFRIPFV 143 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~ 143 (310)
.+.++||++|-+-+.....+.++.+.+ .+++++
T Consensus 101 l~~eaGa~aVkiEgg~~~~~~i~~l~~--~gIpV~ 133 (263)
T TIGR00222 101 VMQETGANAVKLEGGEWLVETVQMLTE--RGVPVV 133 (263)
T ss_pred HHHHhCCeEEEEcCcHhHHHHHHHHHH--CCCCEE
Confidence 444599999953333333344444433 345544
No 424
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=92.60 E-value=9.5 Score=36.13 Aligned_cols=128 Identities=17% Similarity=0.122 Sum_probs=75.8
Q ss_pred HHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeCCCCCchhHHHHHHhcCCCCcEEEe--cCCHHHHHHHHH----
Q 021609 85 KEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DESEVLTPADEENHINKHNFRIPFVCG--CRNLGEALRRIR---- 157 (310)
Q Consensus 85 ~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~~~~~~~~~~~~i~~~~~~i~~~v~--~~t~~ea~~~~~---- 157 (310)
.+.++..+++++.--+ +.+.++.+.+.|++.+ +.+..+...++.+.+.+. +.+++++ ..|.+|...+.+
T Consensus 82 ~~~~~~~Gi~~~stpf--d~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~--gkPvilStGmatl~Ei~~Av~~i~~ 157 (329)
T TIGR03569 82 KEYCESKGIEFLSTPF--DLESADFLEDLGVPRFKIPSGEITNAPLLKKIARF--GKPVILSTGMATLEEIEAAVGVLRD 157 (329)
T ss_pred HHHHHHhCCcEEEEeC--CHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHHHHH
Confidence 3335566888775433 3466788889999988 666667777777777653 4455554 568888777654
Q ss_pred hCCC---EEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCC
Q 021609 158 EGAA---MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVAT 234 (310)
Q Consensus 158 ~Gad---~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t 234 (310)
.|.. ++.+|.... +|+. ....++..+..+++..++||.. ++=-..
T Consensus 158 ~G~~~~~i~llhC~s~--------------------YP~~----------~~~~nL~~I~~Lk~~f~~pVG~--SdHt~G 205 (329)
T TIGR03569 158 AGTPDSNITLLHCTTE--------------------YPAP----------FEDVNLNAMDTLKEAFDLPVGY--SDHTLG 205 (329)
T ss_pred cCCCcCcEEEEEECCC--------------------CCCC----------cccCCHHHHHHHHHHhCCCEEE--CCCCcc
Confidence 3653 555553210 1111 1123466677777767789873 332211
Q ss_pred HHHHHHHHHcCCCE
Q 021609 235 PADAAMMMQLGCDG 248 (310)
Q Consensus 235 ~~d~~~~l~~Gadg 248 (310)
..-...+..+||+-
T Consensus 206 ~~~~~aAvalGA~i 219 (329)
T TIGR03569 206 IEAPIAAVALGATV 219 (329)
T ss_pred HHHHHHHHHcCCCE
Confidence 22334445789993
No 425
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=92.59 E-value=8.3 Score=35.45 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC-CCCCH---HHHHHHHhh--cCcceeeccccC----cHHHHHHHHHcCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA-RMSDP---QLIKEIKQS--VTIPVMAKARIG----HFVEAQILEAIGI 115 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~-~~~~~---~~i~~i~~~--~~iPv~vk~~~~----~~~~a~~~~~aGa 115 (310)
+.++.+.+.|.++++... . .|.. .+... +.++.+.+. ..+||++...-. ..+.++.+.++|+
T Consensus 26 ~~i~~l~~~Gv~gl~~~G-s-------tGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Ga 97 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLG-S-------TGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGA 97 (289)
T ss_dssp HHHHHHHHTTSSEEEESS-T-------TTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCCEEEECC-C-------CcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCc
Confidence 578888899999984431 0 0111 12111 233333333 368998875432 2467888999999
Q ss_pred CEEE-eCCC---CCchhHHHHHH
Q 021609 116 DYVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 116 d~Vi-~~~~---~~~~~~~~~i~ 134 (310)
|++. .+.. .+..++.++++
T Consensus 98 d~v~v~~P~~~~~s~~~l~~y~~ 120 (289)
T PF00701_consen 98 DAVLVIPPYYFKPSQEELIDYFR 120 (289)
T ss_dssp SEEEEEESTSSSCCHHHHHHHHH
T ss_pred eEEEEeccccccchhhHHHHHHH
Confidence 9995 3322 34555555553
No 426
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.55 E-value=1 Score=40.77 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccc--cCCCCCCCCHHHHHHHH---hhc----Ccceeec-----cc-cCc---HHHH
Q 021609 46 EQARVAEEAGACAVMALERVPADIRS--QGGVARMSDPQLIKEIK---QSV----TIPVMAK-----AR-IGH---FVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~--~~G~~~~~~~~~i~~i~---~~~----~iPv~vk-----~~-~~~---~~~a 107 (310)
+.++.+.++|+.++ .++.+....+. .++...+...+.+++++ ++. +++|++. .. .+. .+.+
T Consensus 88 ~~v~~~~~~G~~gv-~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra 166 (243)
T cd00377 88 RTVRELEEAGAAGI-HIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERA 166 (243)
T ss_pred HHHHHHHHcCCEEE-EEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHH
Confidence 45788889999997 66522111111 11222233344555553 322 3555554 11 121 4667
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecC-CH--HHHHHHHHhCCCEEEEcC
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCR-NL--GEALRRIREGAAMIRTKG 167 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~-t~--~ea~~~~~~Gad~V~v~g 167 (310)
+.+.++|||.+......+..++.+..+. .+.++.+-.. .. .....+.++|+..+....
T Consensus 167 ~ay~~AGAD~v~v~~~~~~~~~~~~~~~--~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~ 227 (243)
T cd00377 167 KAYAEAGADGIFVEGLKDPEEIRAFAEA--PDVPLNVNMTPGGNLLTVAELAELGVRRVSYGL 227 (243)
T ss_pred HHHHHcCCCEEEeCCCCCHHHHHHHHhc--CCCCEEEEecCCCCCCCHHHHHHCCCeEEEECh
Confidence 8899999999965444455566555543 3444444321 11 245566788998887643
No 427
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.51 E-value=0.95 Score=41.87 Aligned_cols=74 Identities=27% Similarity=0.309 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCcEEEeccCC-----------cccccccCC---CCC-CCCHHHHHHHHhhcCcceeeccccCcHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERV-----------PADIRSQGG---VAR-MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~-----------~~~~~~~~G---~~~-~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~ 110 (310)
+.++.++++|++++...|.. |......+| ... ....+.++++++.+++||+....+...+++..+
T Consensus 170 ~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~ 249 (296)
T cd04740 170 EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEF 249 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 67888999999998443310 000000111 111 113478888888899999998887777889888
Q ss_pred HHcCCCEEE
Q 021609 111 EAIGIDYVD 119 (310)
Q Consensus 111 ~~aGad~Vi 119 (310)
.++|||.|-
T Consensus 250 l~~GAd~V~ 258 (296)
T cd04740 250 LMAGASAVQ 258 (296)
T ss_pred HHcCCCEEE
Confidence 899999994
No 428
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=92.44 E-value=8.7 Score=35.52 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=46.5
Q ss_pred HHHHHHHH-cCCCEEE--eCC----CCCchhHHHHH---Hhc-CCCCcEEEec--CCHHHHH----HHHHhCCCEEEEcC
Q 021609 105 VEAQILEA-IGIDYVD--ESE----VLTPADEENHI---NKH-NFRIPFVCGC--RNLGEAL----RRIREGAAMIRTKG 167 (310)
Q Consensus 105 ~~a~~~~~-aGad~Vi--~~~----~~~~~~~~~~i---~~~-~~~i~~~v~~--~t~~ea~----~~~~~Gad~V~v~g 167 (310)
..++.+.+ .|++++. ++- .++..|-.+.+ .+. .-.+++++++ .+.+++. .+.+.|+|.+.+..
T Consensus 28 ~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 28 RLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 45677888 9999995 322 24444443333 232 2236666554 5565554 45678999998887
Q ss_pred CCCCc-chHHHHHHHHhhc
Q 021609 168 EAGTG-NIIEAVRHVRSVM 185 (310)
Q Consensus 168 ~~~~~-~~~~~~~~~r~~~ 185 (310)
+.+.. +-....++.++..
T Consensus 108 P~y~~~~~~~l~~~f~~va 126 (293)
T PRK04147 108 PFYYPFSFEEICDYYREII 126 (293)
T ss_pred CcCCCCCHHHHHHHHHHHH
Confidence 65422 2235566666543
No 429
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=92.40 E-value=0.5 Score=44.38 Aligned_cols=84 Identities=27% Similarity=0.247 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHH-HcCCCEEE-eC
Q 021609 45 PEQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILE-AIGIDYVD-ES 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~-~aGad~Vi-~~ 121 (310)
.+.++.++++|++.| .+- +... .. +.|. ..+.+.++++++.+++||+.+..+...++++.+. ..|+|+|- +-
T Consensus 151 ~~~a~~l~~~Gvd~i-~Vh~Rt~~-~~-y~g~--~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGR 225 (312)
T PRK10550 151 FEIADAVQQAGATEL-VVHGRTKE-DG-YRAE--HINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGR 225 (312)
T ss_pred HHHHHHHHhcCCCEE-EECCCCCc-cC-CCCC--cccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcH
Confidence 378899999999988 332 2111 11 1111 1146889999999999999988877777787655 59999994 43
Q ss_pred CCCCchhHHHHH
Q 021609 122 EVLTPADEENHI 133 (310)
Q Consensus 122 ~~~~~~~~~~~i 133 (310)
..+..+.+.+.+
T Consensus 226 g~l~nP~lf~~~ 237 (312)
T PRK10550 226 GALNIPNLSRVV 237 (312)
T ss_pred HhHhCcHHHHHh
Confidence 444444454444
No 430
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=92.34 E-value=0.52 Score=44.99 Aligned_cols=62 Identities=24% Similarity=0.402 Sum_probs=44.9
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE----ccccccCCCHHHHHHHHHHHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV----GSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V----Gsai~~a~dp~~~a~~l~~~i 272 (310)
.+|+.++++++..++||++ .||.+++|+..+.++|+|+|+| |+.+...+.+.....++.+.+
T Consensus 208 ~~~~~l~~lr~~~~~Pviv---Kgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~ 273 (351)
T cd04737 208 LSPADIEFIAKISGLPVIV---KGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAV 273 (351)
T ss_pred CCHHHHHHHHHHhCCcEEE---ecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHh
Confidence 3578889999888999983 6899999999999999999999 445444333333333444443
No 431
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=92.33 E-value=0.88 Score=40.87 Aligned_cols=78 Identities=24% Similarity=0.348 Sum_probs=52.8
Q ss_pred chhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHH
Q 021609 29 GLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQ 108 (310)
Q Consensus 29 ~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~ 108 (310)
|+..+++.|+- ....+.++.++++|+++| +.. ... .| ...+.+.+++++ +++||+.+..+...++++
T Consensus 141 pVsvKir~g~~--~~~~~la~~l~~aG~d~i-hv~-----~~~-~g--~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~ 207 (233)
T cd02911 141 PVSVKIRAGVD--VDDEELARLIEKAGADII-HVD-----AMD-PG--NHADLKKIRDIS--TELFIIGNNSVTTIESAK 207 (233)
T ss_pred CEEEEEcCCcC--cCHHHHHHHHHHhCCCEE-EEC-----cCC-CC--CCCcHHHHHHhc--CCCEEEEECCcCCHHHHH
Confidence 44444444421 234588999999999986 442 011 11 122356777766 789999988887788998
Q ss_pred HHHHcCCCEEE
Q 021609 109 ILEAIGIDYVD 119 (310)
Q Consensus 109 ~~~~aGad~Vi 119 (310)
.+.+.|+|.|-
T Consensus 208 ~~l~~GaD~Vm 218 (233)
T cd02911 208 EMFSYGADMVS 218 (233)
T ss_pred HHHHcCCCEEE
Confidence 88889999994
No 432
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.23 E-value=2.1 Score=39.91 Aligned_cols=92 Identities=17% Similarity=0.256 Sum_probs=55.1
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.|.+.|.++-. ++++.++- .+.++.+.+. .++||++ ..
T Consensus 31 v~~li~~Gv~gi~~~GttGE~-------------------~~Ls~eEr----------~~v~~~~v~~~~grvpvia-G~ 80 (299)
T COG0329 31 VEFLIAAGVDGLVVLGTTGES-------------------PTLTLEER----------KEVLEAVVEAVGGRVPVIA-GV 80 (299)
T ss_pred HHHHHHcCCCEEEECCCCccc-------------------hhcCHHHH----------HHHHHHHHHHHCCCCcEEE-ec
Confidence 455678899999888765421 22332221 2233333333 4699984 45
Q ss_pred CCCCCHHHHHH---HHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 230 GGVATPADAAM---MMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 230 GGI~t~~d~~~---~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
|+-++.+-+.. +.+.|+||+++-...|-.+++....+-|....+
T Consensus 81 g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~ 127 (299)
T COG0329 81 GSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAE 127 (299)
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHH
Confidence 56544433332 235799999999999987776666654444443
No 433
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=92.21 E-value=8.4 Score=34.60 Aligned_cols=66 Identities=20% Similarity=0.044 Sum_probs=36.2
Q ss_pred cHHHHHHHHHcCCCEEE--eC----CCCCchhHHHHHHhcCC-CCcEEEecC----CHH----HHHHHHHhCCCEEEEcC
Q 021609 103 HFVEAQILEAIGIDYVD--ES----EVLTPADEENHINKHNF-RIPFVCGCR----NLG----EALRRIREGAAMIRTKG 167 (310)
Q Consensus 103 ~~~~a~~~~~aGad~Vi--~~----~~~~~~~~~~~i~~~~~-~i~~~v~~~----t~~----ea~~~~~~Gad~V~v~g 167 (310)
..+++..+.+.|+|.|. .+ ..-.+...++.+.+.-. ..++-+.+- .+. .+..+...|+|||++.-
T Consensus 9 ~~~EA~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl 88 (235)
T PF04476_consen 9 NVEEAEEALAGGADIIDLKNPAEGALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGL 88 (235)
T ss_pred CHHHHHHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEec
Confidence 45789999999999996 22 12234444444444222 233322221 111 23334456999999864
Q ss_pred C
Q 021609 168 E 168 (310)
Q Consensus 168 ~ 168 (310)
.
T Consensus 89 ~ 89 (235)
T PF04476_consen 89 F 89 (235)
T ss_pred C
Confidence 4
No 434
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=92.18 E-value=11 Score=36.11 Aligned_cols=47 Identities=32% Similarity=0.597 Sum_probs=35.9
Q ss_pred CCEEEeCCCCCCCHHHHHHHH-HcCCCE-EEEccccccCCC-HHHHHHHHHHHH
Q 021609 222 LPVVHFAAGGVATPADAAMMM-QLGCDG-VFVGSGVFKSGD-PVKRAQAIVRAV 272 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l-~~Gadg-V~VGsai~~a~d-p~~~a~~l~~~i 272 (310)
.|+ .+||+ ++..+.+++ ..|-|- +.+|..++.+++ +..-+++|++++
T Consensus 315 ~Pv---~sgG~-~~~~v~~l~~~~G~Dvil~aGGgi~gHp~g~~ag~~a~rqa~ 364 (364)
T cd08210 315 LPA---PGGGM-SVERAPEMVELYGPDVMLLIGGSLLRAGDDLTENTRAFVEAV 364 (364)
T ss_pred cCc---CCCCc-CHHHHHHHHHHcCCcEEEEccccccCCCCChHHHHHHHHhhC
Confidence 577 68998 689999998 468773 456899999876 777777777653
No 435
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=92.09 E-value=0.65 Score=44.57 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=48.0
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc----cccccCCCHHHHHHHHHHHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG----SGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG----sai~~a~dp~~~a~~l~~~i 272 (310)
..|+.++++++..++||++ -||.+++|+..+.++|+|+|.|+ +.+...+.+.....++.+++
T Consensus 215 ~~w~~i~~l~~~~~~Pviv---KGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av 280 (367)
T TIGR02708 215 LSPRDIEEIAGYSGLPVYV---KGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAV 280 (367)
T ss_pred CCHHHHHHHHHhcCCCEEE---eCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHh
Confidence 3578899999888999983 79999999999999999999876 45555445555555566555
No 436
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=92.08 E-value=0.95 Score=42.04 Aligned_cols=74 Identities=28% Similarity=0.385 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCcEEEecc--CCcc-cc--------cccCCCC----CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALE--RVPA-DI--------RSQGGVA----RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~--~~~~-~~--------~~~~G~~----~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~ 110 (310)
+.++.++++|+++|...| +... +. ...+|.+ .....+.++++++.+++||+....+...+++..+
T Consensus 173 ~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~ 252 (301)
T PRK07259 173 EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIEF 252 (301)
T ss_pred HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHHHH
Confidence 578889999999984444 1100 00 0111111 1124678889999899999998888777888888
Q ss_pred HHcCCCEEE
Q 021609 111 EAIGIDYVD 119 (310)
Q Consensus 111 ~~aGad~Vi 119 (310)
..+|||.|-
T Consensus 253 l~aGAd~V~ 261 (301)
T PRK07259 253 IMAGASAVQ 261 (301)
T ss_pred HHcCCCcee
Confidence 899999994
No 437
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=92.00 E-value=2.8 Score=40.55 Aligned_cols=160 Identities=21% Similarity=0.220 Sum_probs=91.2
Q ss_pred HHHHHHHhhc-Ccceeecccc----Cc--------HHHHHHHHHcCCCEEEeCCCCC-chhH---HHHHHhcCCC----C
Q 021609 82 QLIKEIKQSV-TIPVMAKARI----GH--------FVEAQILEAIGIDYVDESEVLT-PADE---ENHINKHNFR----I 140 (310)
Q Consensus 82 ~~i~~i~~~~-~iPv~vk~~~----~~--------~~~a~~~~~aGad~Vi~~~~~~-~~~~---~~~i~~~~~~----i 140 (310)
+.++++|+.. +.|+..-.|. |+ ..+++.+.+.|.|.+-+=|+++ +..+ .+.+++++.. +
T Consensus 66 eRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i 145 (472)
T COG5016 66 ERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTI 145 (472)
T ss_pred HHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEE
Confidence 6778888775 6776543221 11 3567888899999995545443 3333 4444444432 2
Q ss_pred cEEEe-cCCHHH----HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHH
Q 021609 141 PFVCG-CRNLGE----ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQ 215 (310)
Q Consensus 141 ~~~v~-~~t~~e----a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~ 215 (310)
.+..+ +||.+- ++.+.+.|+|.|.+.-..+.- + .....++++.
T Consensus 146 ~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGll----------------------t----------P~~ayelVk~ 193 (472)
T COG5016 146 SYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLL----------------------T----------PYEAYELVKA 193 (472)
T ss_pred EeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccC----------------------C----------hHHHHHHHHH
Confidence 23333 566533 555667888888764221100 0 1112678888
Q ss_pred HhhcCCCCEEE--eCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 216 TKQLGRLPVVH--FAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 216 i~~~~~iPVi~--iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
+++...+||.+ =+..|+. .-...++.++|+|++=-.=+=+......-..+.++.+++.
T Consensus 194 iK~~~~~pv~lHtH~TsG~a-~m~ylkAvEAGvD~iDTAisp~S~gtsqP~tEtmv~aL~g 253 (472)
T COG5016 194 IKKELPVPVELHTHATSGMA-EMTYLKAVEAGVDGIDTAISPLSGGTSQPATETMVAALRG 253 (472)
T ss_pred HHHhcCCeeEEecccccchH-HHHHHHHHHhCcchhhhhhccccCCCCCCcHHHHHHHhcC
Confidence 88888888864 2788984 6666788899999873221111111111124567777765
No 438
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=91.93 E-value=0.8 Score=40.47 Aligned_cols=81 Identities=30% Similarity=0.272 Sum_probs=53.4
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHc-CCCEEE-eCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAI-GIDYVD-ESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~a-Gad~Vi-~~~~ 123 (310)
+.++.+.+.|++.| .+..-....... ...+.+.++++++.+++||++...+...+++..+.+. |+|.|. +...
T Consensus 142 ~~~~~l~~~Gvd~i-~v~~~~~~~~~~----~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~ 216 (231)
T cd02801 142 ELAKALEDAGASAL-TVHGRTREQRYS----GPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGA 216 (231)
T ss_pred HHHHHHHHhCCCEE-EECCCCHHHcCC----CCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHh
Confidence 57888899999987 432111011111 1234788899999999999998888777788777776 999995 3333
Q ss_pred CCchhHHH
Q 021609 124 LTPADEEN 131 (310)
Q Consensus 124 ~~~~~~~~ 131 (310)
+..+.+.+
T Consensus 217 l~~P~~~~ 224 (231)
T cd02801 217 LGNPWLFR 224 (231)
T ss_pred HhCCHHHH
Confidence 33344433
No 439
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=91.87 E-value=13 Score=36.24 Aligned_cols=54 Identities=30% Similarity=0.442 Sum_probs=43.2
Q ss_pred CCEEEeCCCCCCCHHHHHHHH-HcCCCEE-EEccccccCC-CHHHHHHHHHHHHhccCChh
Q 021609 222 LPVVHFAAGGVATPADAAMMM-QLGCDGV-FVGSGVFKSG-DPVKRAQAIVRAVTHYSDPE 279 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l-~~GadgV-~VGsai~~a~-dp~~~a~~l~~~i~~~~~~~ 279 (310)
.|| .+||+ ++..+.+++ ..|-|-+ .+|..++.++ .|..-+++++++++.+.+..
T Consensus 337 ~Pv---~sGG~-~~~~vp~~~~~~G~Dvil~~GGGi~gHp~G~~aGa~A~rqA~ea~~~G~ 393 (412)
T TIGR03326 337 FPV---SSGGL-HPGLVPPLIDALGKDLVIQAGGGVHGHPDGPRAGAKALRAAIDAIIEGI 393 (412)
T ss_pred eEe---cCCCC-ChhHHHHHHHhcCCceEEecCCccccCCCChhhHHHHHHHHHHHHHcCC
Confidence 677 69999 699999999 5798854 5689999864 67788889999998876543
No 440
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=91.82 E-value=0.35 Score=46.69 Aligned_cols=43 Identities=28% Similarity=0.499 Sum_probs=38.1
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
..+|+.++++++..++|+++ .||.+++|+..+.++|+|+|+|.
T Consensus 239 ~~tW~~i~~lr~~~~~pviv---KgV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 239 SLTWEDLAFLREWTDLPIVL---KGILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CCCHHHHHHHHHhcCCCEEE---ecCCCHHHHHHHHHCCCCEEEEc
Confidence 34588999999888999983 79999999999999999999986
No 441
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=91.82 E-value=6.2 Score=37.56 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCEE-EeCCCCCchhHHHHHHhcCCCCcEEEecC-CHHHHHHHHHhCCCEEEEcCC
Q 021609 104 FVEAQILEAIGIDYV-DESEVLTPADEENHINKHNFRIPFVCGCR-NLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 104 ~~~a~~~~~aGad~V-i~~~~~~~~~~~~~i~~~~~~i~~~v~~~-t~~ea~~~~~~Gad~V~v~g~ 168 (310)
..++..+.++|+|.| +...+.+..+..+.+++ ...+|+++|+| +..-|..+++.|+|-+.+++.
T Consensus 45 v~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~-~~~iPlvADIHFd~~lAl~a~~~G~~~iRINPG 110 (360)
T PRK00366 45 VAQIKRLARAGCEIVRVAVPDMEAAAALPEIKK-QLPVPLVADIHFDYRLALAAAEAGADALRINPG 110 (360)
T ss_pred HHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHH-cCCCCEEEecCCCHHHHHHHHHhCCCEEEECCC
Confidence 366788899999999 44444444455555544 34699999986 778899999999999999854
No 442
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=91.81 E-value=6.2 Score=36.10 Aligned_cols=53 Identities=17% Similarity=0.148 Sum_probs=35.7
Q ss_pred HHHHHhhc-CCCCEEEe---CCCCCCCHHHHHHHH-HcCCC-EEEEccccccCCCHHHHHH
Q 021609 212 LVMQTKQL-GRLPVVHF---AAGGVATPADAAMMM-QLGCD-GVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 212 ~i~~i~~~-~~iPVi~i---A~GGI~t~~d~~~~l-~~Gad-gV~VGsai~~a~dp~~~a~ 266 (310)
.++.+++. .+.|++.. +.|| +++|..+.+ ..|++ .++|||+|+.+.||...++
T Consensus 200 e~~~iR~~~~~~~il~PGigaqG~--~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~~a~~ 258 (261)
T TIGR02127 200 DLLRLRIEMPTAPFLVPGFGAQGA--EAADLRGLFGADGSGLLINSSRGVLFAGPRSSALV 258 (261)
T ss_pred HHHHHHHhCCCCeEEeCCcCCCCC--CHHHHHHHhcccCCCEEEEcCHHHhcCCChHHHHH
Confidence 35555543 34555542 3333 578887766 46888 8999999999999976544
No 443
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=91.78 E-value=11 Score=35.59 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=42.6
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccCC-cccccccCC--CCCCCCHHHHHHHHhhcCcceee-ccccC-c---HHH----
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALERV-PADIRSQGG--VARMSDPQLIKEIKQSVTIPVMA-KARIG-H---FVE---- 106 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~~-~~~~~~~~G--~~~~~~~~~i~~i~~~~~iPv~v-k~~~~-~---~~~---- 106 (310)
+...=|+..|+.+.++|+|.|..=+.. ........+ ..+......++.+++....|+++ ...++ + .++
T Consensus 39 mlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~n 118 (332)
T PLN02424 39 MVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVES 118 (332)
T ss_pred EEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHH
Confidence 333446688999999999987211100 000000000 00011123556667778899888 43333 2 122
Q ss_pred HHHH-HHcCCCEEE
Q 021609 107 AQIL-EAIGIDYVD 119 (310)
Q Consensus 107 a~~~-~~aGad~Vi 119 (310)
+..+ .++||+.|=
T Consensus 119 A~rl~~eaGa~aVK 132 (332)
T PLN02424 119 AVRMLKEGGMDAVK 132 (332)
T ss_pred HHHHHHHhCCcEEE
Confidence 4344 569999994
No 444
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=91.75 E-value=0.92 Score=40.23 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=58.9
Q ss_pred HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc----C--------cHHHHHHHHHcCC
Q 021609 48 ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI----G--------HFVEAQILEAIGI 115 (310)
Q Consensus 48 A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~----~--------~~~~a~~~~~aGa 115 (310)
+..+...|+|++ ++. ...+.........+.+..+++.+++|+++-.|. | +.+..+.+.+.|+
T Consensus 16 ~~~~~~~~~D~v-ElR-----lD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~ 89 (224)
T PF01487_consen 16 LEEAESSGADAV-ELR-----LDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLELLERAIRLGP 89 (224)
T ss_dssp HHHHHHTTTSEE-EEE-----GGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCCEE-EEE-----eccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHHHHHHHHcCC
Confidence 444455599987 442 111110001112467777888889999986442 1 1344567777999
Q ss_pred CEEEeCCCCCchhHHHHHHhcCCCCcEEEecC----CH--HH----HHHHHHhCCCEEEEc
Q 021609 116 DYVDESEVLTPADEENHINKHNFRIPFVCGCR----NL--GE----ALRRIREGAAMIRTK 166 (310)
Q Consensus 116 d~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~----t~--~e----a~~~~~~Gad~V~v~ 166 (310)
|+|.+-....+............+..++++.| ++ ++ ..++.+.|+|++++-
T Consensus 90 d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia 150 (224)
T PF01487_consen 90 DYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIA 150 (224)
T ss_dssp SEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEE
T ss_pred CEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 99953322222222222222335567777776 22 22 233456799998864
No 445
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=91.70 E-value=0.89 Score=42.16 Aligned_cols=74 Identities=27% Similarity=0.414 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCcEEEeccCC---ccccc--------ccCCCCCC----CCHHHHHHHHhhcCcceeeccccCcHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERV---PADIR--------SQGGVARM----SDPQLIKEIKQSVTIPVMAKARIGHFVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~---~~~~~--------~~~G~~~~----~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~ 110 (310)
+.++.++++|+++|...|.. ..+.+ ..+|.+-. ...+.+.++++.+++||+....+...+++..+
T Consensus 173 ~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~ 252 (300)
T TIGR01037 173 EIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEF 252 (300)
T ss_pred HHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHH
Confidence 67888999999998433311 00101 11111100 01367888888899999998887777889888
Q ss_pred HHcCCCEEE
Q 021609 111 EAIGIDYVD 119 (310)
Q Consensus 111 ~~aGad~Vi 119 (310)
..+|||.|-
T Consensus 253 l~~GAd~V~ 261 (300)
T TIGR01037 253 LMAGASAVQ 261 (300)
T ss_pred HHcCCCcee
Confidence 889999994
No 446
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=91.69 E-value=11 Score=34.82 Aligned_cols=83 Identities=20% Similarity=0.221 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc---HHHHHHHHHcCCCE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH---FVEAQILEAIGIDY 117 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~---~~~a~~~~~aGad~ 117 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++....+. .+.++.+.++|+|+
T Consensus 25 ~l~~~l~~~Gv~gi~v~G-s------tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~ 97 (289)
T cd00951 25 AHVEWLLSYGAAALFAAG-G------TGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADG 97 (289)
T ss_pred HHHHHHHHcCCCEEEECc-C------CcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCE
Confidence 467788999999984431 1 1100112211 2333334443 589998764332 46678889999999
Q ss_pred EE-eCCC---CCchhHHHHHHh
Q 021609 118 VD-ESEV---LTPADEENHINK 135 (310)
Q Consensus 118 Vi-~~~~---~~~~~~~~~i~~ 135 (310)
++ .+.. .+..++.++++.
T Consensus 98 v~~~pP~y~~~~~~~i~~~f~~ 119 (289)
T cd00951 98 ILLLPPYLTEAPQEGLYAHVEA 119 (289)
T ss_pred EEECCCCCCCCCHHHHHHHHHH
Confidence 96 3332 233455555443
No 447
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=91.66 E-value=0.81 Score=42.58 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCcEEEeccCCcc--c-----------c--c-ccCCCCC----CCCHHHHHHHHhhc--CcceeeccccCc
Q 021609 46 EQARVAEEAGACAVMALERVPA--D-----------I--R-SQGGVAR----MSDPQLIKEIKQSV--TIPVMAKARIGH 103 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~--~-----------~--~-~~~G~~~----~~~~~~i~~i~~~~--~iPv~vk~~~~~ 103 (310)
+.++.++++|+++|+..|..+. . . + ..+|.+- ....+.+.++++.+ ++|++....+..
T Consensus 184 ~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~ 263 (299)
T cd02940 184 EIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIES 263 (299)
T ss_pred HHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCC
Confidence 7889999999999864441100 0 0 0 0111111 11257888899988 899999888777
Q ss_pred HHHHHHHHHcCCCEEE
Q 021609 104 FVEAQILEAIGIDYVD 119 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi 119 (310)
.+++..+..+|||.|-
T Consensus 264 ~~da~~~l~aGA~~V~ 279 (299)
T cd02940 264 WEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHcCCChhe
Confidence 8888888889999993
No 448
>PRK06256 biotin synthase; Validated
Probab=91.64 E-value=12 Score=35.18 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=32.1
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+..+- +++|--....+...+.-+||+++++|.-++..+++...-.++++.+
T Consensus 270 ~~~I~-~~~gr~~~~~~~~~~~~~g~~~~~~g~~lt~~g~~~~~d~~~~~~~ 320 (336)
T PRK06256 270 DKEIR-IAGGREVNLRSLQPLGLGGANSVIVGNYLTTVGQPATADLDMIEDL 320 (336)
T ss_pred CCeeE-ecCchhhhchhhHHHHhccCceeeECCcccCCCCChHHHHHHHHHC
Confidence 34443 2434323445554444379999999999999888876555555544
No 449
>PLN02535 glycolate oxidase
Probab=91.63 E-value=0.4 Score=45.99 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=38.8
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
..+|+.++++++..++||++ .||.+++|+..+.++|+|+|.|..
T Consensus 209 ~~tW~~i~~lr~~~~~Pviv---KgV~~~~dA~~a~~~GvD~I~vsn 252 (364)
T PLN02535 209 SLSWKDIEWLRSITNLPILI---KGVLTREDAIKAVEVGVAGIIVSN 252 (364)
T ss_pred CCCHHHHHHHHhccCCCEEE---ecCCCHHHHHHHHhcCCCEEEEeC
Confidence 34588999999988999973 899999999999999999999863
No 450
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.59 E-value=0.81 Score=41.31 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=64.2
Q ss_pred HHHHHHHHcCCcEEEeccCCccccccc-CCCCCCCCHHHHHHHHhh----cCcceeeccccC-----------cHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQ-GGVARMSDPQLIKEIKQS----VTIPVMAKARIG-----------HFVEAQI 109 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~-~G~~~~~~~~~i~~i~~~----~~iPv~vk~~~~-----------~~~~a~~ 109 (310)
+.++.++++|+.++ .++.+ +.+ .+.......+.+.+|+.. .+..+.+.-|.. ..+.++.
T Consensus 89 ~tv~~~~~aG~agi-~IEDq----~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~a 163 (238)
T PF13714_consen 89 RTVRELERAGAAGI-NIEDQ----RCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKA 163 (238)
T ss_dssp HHHHHHHHCT-SEE-EEESB----STTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEE-Eeecc----ccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHH
Confidence 67999999999997 77533 211 222233334566666533 233344443221 1356788
Q ss_pred HHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecC-CHHHHHHHHHhCCCEEEEcC
Q 021609 110 LEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCR-NLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 110 ~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~-t~~ea~~~~~~Gad~V~v~g 167 (310)
+.++|||.|......+..++.+..+.. +.++.+-.. ..-....+.++|+..|....
T Consensus 164 Y~eAGAD~ifi~~~~~~~~i~~~~~~~--~~Pl~v~~~~~~~~~~eL~~lGv~~v~~~~ 220 (238)
T PF13714_consen 164 YAEAGADMIFIPGLQSEEEIERIVKAV--DGPLNVNPGPGTLSAEELAELGVKRVSYGN 220 (238)
T ss_dssp HHHTT-SEEEETTSSSHHHHHHHHHHH--SSEEEEETTSSSS-HHHHHHTTESEEEETS
T ss_pred HHHcCCCEEEeCCCCCHHHHHHHHHhc--CCCEEEEcCCCCCCHHHHHHCCCcEEEEcH
Confidence 899999999766555566665555543 344433321 11356667788999887653
No 451
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=91.57 E-value=16 Score=36.40 Aligned_cols=205 Identities=17% Similarity=0.196 Sum_probs=107.4
Q ss_pred HHHHHHHHcCCcEEEecc-CCccc--ccccCCCCCCCCHHHHHHHHhhc-Ccceeecccc----Cc--------HHHHHH
Q 021609 46 EQARVAEEAGACAVMALE-RVPAD--IRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARI----GH--------FVEAQI 109 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~--~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~----~~--------~~~a~~ 109 (310)
..|..+.++|...+ +.- ....+ .+.. .....+.++.+++.. +.|+..-.+. ++ ..+++.
T Consensus 39 ~ia~~ld~~G~~si-E~wGGAtfd~~~rfl----~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~ 113 (468)
T PRK12581 39 PVLTILDKIGYYSL-ECWGGATFDACIRFL----NEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISL 113 (468)
T ss_pred HHHHHHHhcCCCEE-EecCCcchhhhhccc----CCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHH
Confidence 46778888998865 331 11001 1111 123347888888765 7777754432 11 123788
Q ss_pred HHHcCCCEEEeCCCCC-ch---hHHHHHHhcCCCCcEEEe-----cCCH----HHHHHHHHhCCCEEEEcCCCCCcchHH
Q 021609 110 LEAIGIDYVDESEVLT-PA---DEENHINKHNFRIPFVCG-----CRNL----GEALRRIREGAAMIRTKGEAGTGNIIE 176 (310)
Q Consensus 110 ~~~aGad~Vi~~~~~~-~~---~~~~~i~~~~~~i~~~v~-----~~t~----~ea~~~~~~Gad~V~v~g~~~~~~~~~ 176 (310)
+.+.|+|.+-+.+.+. .. ..++.+++.+......++ .+|. +-++.+.++|++.|.+.=..+.-.
T Consensus 114 a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~--- 190 (468)
T PRK12581 114 SAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILT--- 190 (468)
T ss_pred HHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcC---
Confidence 8999999996555543 22 334444444432222222 1222 335566778999887642222111
Q ss_pred HHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE--eCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH--FAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 177 ~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~--iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
|+. ..++++.+++..++|+-+ =..-|. ...+..+++++|||.|=..-.
T Consensus 191 -------------------P~~----------v~~Lv~alk~~~~~pi~~H~Hnt~Gl-A~An~laAieAGad~vD~ai~ 240 (468)
T PRK12581 191 -------------------PKA----------AKELVSGIKAMTNLPLIVHTHATSGI-SQMTYLAAVEAGADRIDTALS 240 (468)
T ss_pred -------------------HHH----------HHHHHHHHHhccCCeEEEEeCCCCcc-HHHHHHHHHHcCCCEEEeecc
Confidence 111 134566666656677642 045676 467777888999987654322
Q ss_pred cc--cCCCHHHHHHHHHHHHhc-----cCChhhhhhhhhhccc
Q 021609 255 VF--KSGDPVKRAQAIVRAVTH-----YSDPEVLAEVSCGLGE 290 (310)
Q Consensus 255 i~--~a~dp~~~a~~l~~~i~~-----~~~~~~~~~~~~~~~~ 290 (310)
=+ ++.||. .+.++..++. ..+.+.+.++++.+..
T Consensus 241 g~g~gagN~~--tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~ 281 (468)
T PRK12581 241 PFSEGTSQPA--TESMYLALKEAGYDITLDETLLEQAANHLRQ 281 (468)
T ss_pred ccCCCcCChh--HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 11 233543 4555555553 2234444455544433
No 452
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=91.47 E-value=11 Score=35.79 Aligned_cols=69 Identities=25% Similarity=0.212 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
+.|+++.+.||..+..+- .-+. .+.......+.++.+++.+++++.+....-..+.++.+.++|+|..-
T Consensus 91 e~Ak~ak~~Ga~r~c~~a----agr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~yn 159 (335)
T COG0502 91 EAAKKAKAAGATRFCMGA----AGRG-PGRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYN 159 (335)
T ss_pred HHHHHHHHcCCceEEEEE----eccC-CCccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhhee
Confidence 679999999988763331 0010 01111122356666777888998888776567899999999999983
No 453
>PRK12376 putative translaldolase; Provisional
Probab=91.41 E-value=11 Score=34.10 Aligned_cols=175 Identities=13% Similarity=0.115 Sum_probs=98.3
Q ss_pred ccccCCCHHHHHHHHHcC-CcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccC----cHHHHHHHH
Q 021609 38 VIMDVVTPEQARVAEEAG-ACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIG----HFVEAQILE 111 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~G-a~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~----~~~~a~~~~ 111 (310)
++.|-.|.+..+.+.+.| .+++ --||. ..+..++. ...+.++++++.. +-||.+..... ..++++.+.
T Consensus 8 ~flDtAd~~eik~~~~~g~i~GV-TTNPs--ll~k~g~~---~~~~~~~~i~~~~~~~~vs~EV~~~d~~~mv~eA~~l~ 81 (236)
T PRK12376 8 IFADGADLEEMLAAYKNPLVKGF-TTNPS--LMRKAGVT---DYKAFAKEVLAEIPDAPISFEVFADDLETMEKEAEKIA 81 (236)
T ss_pred EEEecCCHHHHHHHHhCCCeeEE-ECCHH--HHHhcCCC---CHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHH
Confidence 455667788888888877 4554 44433 22222211 1246777777766 35777654322 235667777
Q ss_pred HcCCCEEE-eCCCC----CchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHh----CCCEEEEc-CCCCCcchHHHHHH
Q 021609 112 AIGIDYVD-ESEVL----TPADEENHINKHNFRIPFVC-GCRNLGEALRRIRE----GAAMIRTK-GEAGTGNIIEAVRH 180 (310)
Q Consensus 112 ~aGad~Vi-~~~~~----~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~----Gad~V~v~-g~~~~~~~~~~~~~ 180 (310)
+.+-+.++ ++... +--...+.+.+. |+.+.+ -+-+...+..+.++ |++|+... ||..
T Consensus 82 ~~~~nv~VKIP~T~~~G~~gl~Ai~~L~~~--GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yispfvgR~d---------- 149 (236)
T PRK12376 82 SLGENVYVKIPITNTKGESTIPLIKKLSAD--GVKLNVTAIFTIEQVKEVVDALTPGVPAIVSVFAGRIA---------- 149 (236)
T ss_pred HhCCCeEEEECCcCccchhHHHHHHHHHHC--CCeEEEeeecCHHHHHHHHHHhcCCCCeEEEEecchhh----------
Confidence 77766555 44321 112334444443 444333 37788888755544 58998865 2210
Q ss_pred HHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh----hcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK----QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~----~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
... ..+...++++. ...+.-|+ ..-++++.++.++..+|||.+-+.-.++
T Consensus 150 ------------d~g-----------~D~~~~i~~i~~i~~~~~~tkIL---aASiR~~~~v~~a~~~Gad~vTvp~~v~ 203 (236)
T PRK12376 150 ------------DTG-----------VDPVPLMKEALAICHSKPGVELL---WASPREVYNIIQADQLGCDIITVTPDVL 203 (236)
T ss_pred ------------hcC-----------CCcHHHHHHHHHHHHhCCCcEEE---EEecCCHHHHHHHHHcCCCEEEcCHHHH
Confidence 001 11233333332 22344565 3689999999999999999998664443
No 454
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=91.39 E-value=7.7 Score=34.38 Aligned_cols=111 Identities=20% Similarity=0.086 Sum_probs=66.5
Q ss_pred HHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc--HHHHHHHHHcCCCEEEeC---
Q 021609 47 QARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH--FVEAQILEAIGIDYVDES--- 121 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~--~~~a~~~~~aGad~Vi~~--- 121 (310)
.++.+.++||+++..++-.+ ..+...+.+..+.++.-+.+.+.-.+ .+.++.+.++|+|.++.+
T Consensus 72 e~~ma~~aGAd~~tV~g~A~-----------~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~ 140 (217)
T COG0269 72 EARMAFEAGADWVTVLGAAD-----------DATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGR 140 (217)
T ss_pred HHHHHHHcCCCEEEEEecCC-----------HHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecc
Confidence 57888899999984442110 11123333445567877777654332 345566777999999521
Q ss_pred C----CCCc-hhHHHHHHh-cCCCCc-EEEecCCHHHHHHHHHhCCCEEEEcCC
Q 021609 122 E----VLTP-ADEENHINK-HNFRIP-FVCGCRNLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 122 ~----~~~~-~~~~~~i~~-~~~~i~-~~v~~~t~~ea~~~~~~Gad~V~v~g~ 168 (310)
+ ..++ .+..+.+++ ...+.. .+.+--+++++......|++++.+.+.
T Consensus 141 D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGra 194 (217)
T COG0269 141 DAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADIVIVGRA 194 (217)
T ss_pred cHhhcCCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCEEEECch
Confidence 2 2344 344444444 344433 344456888888888999999887543
No 455
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=91.32 E-value=2.8 Score=37.07 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC-----CCC----chhHHHHHHhcCCC-CcEEEecCCH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE-----VLT----PADEENHINKHNFR-IPFVCGCRNL 149 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~-----~~~----~~~~~~~i~~~~~~-i~~~v~~~t~ 149 (310)
.+.++++++. ++++.+..-+. ..++..+.++||++|- ... ... ..++.++++.++.. ....+++++.
T Consensus 91 l~ai~~L~~~-gi~v~~T~V~s-~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~ 168 (211)
T cd00956 91 LKAIKKLSEE-GIKTNVTAIFS-AAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNP 168 (211)
T ss_pred HHHHHHHHHc-CCceeeEEecC-HHHHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCH
Confidence 5666666654 66666554333 4678888999999973 111 112 22445555544444 3477789999
Q ss_pred HHHHHHHHhCCCEEEEc
Q 021609 150 GEALRRIREGAAMIRTK 166 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~ 166 (310)
.++..+..+|+|++++.
T Consensus 169 ~ei~~a~~~Gad~vTv~ 185 (211)
T cd00956 169 QHVIEAALAGADAITLP 185 (211)
T ss_pred HHHHHHHHcCCCEEEeC
Confidence 99999999999999875
No 456
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=91.19 E-value=1 Score=38.36 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
...++++.+.+++|++ |+|=|.+.+++.+++++||-+|-
T Consensus 133 Pkvi~~i~~~t~~piI--AGGLi~t~Eev~~Al~aGA~avS 171 (181)
T COG1954 133 PKVIKEITEKTHIPII--AGGLIETEEEVREALKAGAVAVS 171 (181)
T ss_pred HHHHHHHHHhcCCCEE--eccccccHHHHHHHHHhCcEEEe
Confidence 3467788888899998 78889999999999999998875
No 457
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=91.18 E-value=5.5 Score=36.40 Aligned_cols=50 Identities=22% Similarity=0.181 Sum_probs=36.0
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc
Q 021609 38 VIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI 101 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~ 101 (310)
.+.++.+++.+..+.+. +|.+ ++ . ...++++++++++.+ ++.||.+|-..
T Consensus 84 vvTeV~~~~~~~~v~~~-~Dil-QI-------g----Arn~rn~~LL~a~g~-t~kpV~lKrG~ 133 (264)
T PRK05198 84 VLTDVHEPEQAAPVAEV-VDVL-QI-------P----AFLCRQTDLLVAAAK-TGKVVNIKKGQ 133 (264)
T ss_pred eEEEeCCHHHHHHHHhh-CcEE-EE-------C----chhcchHHHHHHHhc-cCCeEEecCCC
Confidence 46677788888888887 8865 54 2 234677889888764 68999998543
No 458
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.13 E-value=0.9 Score=45.52 Aligned_cols=42 Identities=21% Similarity=0.113 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
.+.++++++..+.++.+ ..|-|-|++++..++++|||++.||
T Consensus 271 ~~~i~~ir~~~~~~~~V-~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 271 KRTLDWIREKYGDSVKV-GAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHHhCCCCceE-EeccccCHHHHHHHHHcCCCEEEEC
Confidence 45566776653322332 3689999999999999999999883
No 459
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=91.02 E-value=3.7 Score=37.46 Aligned_cols=85 Identities=15% Similarity=0.256 Sum_probs=57.2
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc-CC-------hhh
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY-SD-------PEV 280 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~-~~-------~~~ 280 (310)
.++.+..+++.+++||+. -. =|.++.++.++..+|||+|.+.-.++. + ...+++++..++. ++ .+.
T Consensus 99 ~~~~l~~v~~~v~iPvl~-kd-fi~~~~qi~~a~~~GAD~VlLi~~~l~---~-~~l~~li~~a~~lGl~~lvevh~~~E 172 (260)
T PRK00278 99 SLEYLRAARAAVSLPVLR-KD-FIIDPYQIYEARAAGADAILLIVAALD---D-EQLKELLDYAHSLGLDVLVEVHDEEE 172 (260)
T ss_pred CHHHHHHHHHhcCCCEEe-ee-ecCCHHHHHHHHHcCCCEEEEEeccCC---H-HHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 466788888888999985 23 356788999999999999999988874 3 3455565555542 22 222
Q ss_pred hhhhhhhcccchhcccCccc
Q 021609 281 LAEVSCGLGEAMVGLNLSDH 300 (310)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~ 300 (310)
+. ....+|....|+|-+|.
T Consensus 173 ~~-~A~~~gadiIgin~rdl 191 (260)
T PRK00278 173 LE-RALKLGAPLIGINNRNL 191 (260)
T ss_pred HH-HHHHcCCCEEEECCCCc
Confidence 22 23456888888775443
No 460
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=90.99 E-value=5.8 Score=36.09 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=35.5
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc
Q 021609 38 VIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI 101 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~ 101 (310)
.+.++-+++.+..+.+. +|.+ ++ . ...++++++++++.+ ++.||.+|-..
T Consensus 76 vvTeV~~~~~~~~vae~-vDil-QI-------g----Arn~rn~~LL~a~g~-t~kpV~lKrG~ 125 (258)
T TIGR01362 76 ILTDVHESSQCEPVAEV-VDII-QI-------P----AFLCRQTDLLVAAAK-TGRIVNVKKGQ 125 (258)
T ss_pred eEEEeCCHHHHHHHHhh-CcEE-Ee-------C----chhcchHHHHHHHhc-cCCeEEecCCC
Confidence 46677778888888777 7855 54 2 234677888888764 68999998543
No 461
>PRK15452 putative protease; Provisional
Probab=90.93 E-value=6.6 Score=38.78 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=30.0
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
+..+..+++. .++|+.+--.-.|.+...+..+.+.|++.|.+.+-+.
T Consensus 98 ~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELs 145 (443)
T PRK15452 98 PGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELS 145 (443)
T ss_pred HHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCC
Confidence 3344444443 3567764234466777777777788888888877664
No 462
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=90.89 E-value=0.65 Score=43.90 Aligned_cols=87 Identities=31% Similarity=0.365 Sum_probs=55.0
Q ss_pred cchhhhhhC-c--ccccCCCHHHHHHHHHcCCcEEEeccCCcccccccC--CCCCCCCHHHHHHHHhhcCcceeeccccC
Q 021609 28 VGLAQMLRG-G--VIMDVVTPEQARVAEEAGACAVMALERVPADIRSQG--GVARMSDPQLIKEIKQSVTIPVMAKARIG 102 (310)
Q Consensus 28 ~~~~~~~~~-g--~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~--G~~~~~~~~~i~~i~~~~~iPv~vk~~~~ 102 (310)
.+.++.++. | ++..+++.+.|+.+++.|+|.|+.-. ..+.| |........++.++++.+++||++-..+.
T Consensus 126 ~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG-----~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~ 200 (330)
T PF03060_consen 126 PEVIERLHAAGIKVIPQVTSVREARKAAKAGADAIVAQG-----PEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIA 200 (330)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE------TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--
T ss_pred HHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEEEEec-----cccCCCCCccccceeeHHHHHhhhcCCcEEEecCcC
Confidence 344554442 3 46677899999999999999984211 11111 21111246788889999999999988887
Q ss_pred cHHHHHHHHHcCCCEEE
Q 021609 103 HFVEAQILEAIGIDYVD 119 (310)
Q Consensus 103 ~~~~a~~~~~aGad~Vi 119 (310)
+...+..+...|||+|.
T Consensus 201 dg~~iaaal~lGA~gV~ 217 (330)
T PF03060_consen 201 DGRGIAAALALGADGVQ 217 (330)
T ss_dssp SHHHHHHHHHCT-SEEE
T ss_pred CHHHHHHHHHcCCCEee
Confidence 77778899999999995
No 463
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=90.75 E-value=16 Score=34.92 Aligned_cols=188 Identities=12% Similarity=0.052 Sum_probs=104.5
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccC-cHHHHHHHHHcC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIG-HFVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~-~~~~a~~~~~aG 114 (310)
++.+.++ .+++++.++.-|+++.+. ..+. .|. ......++...+.. .+||.+.+--+ .++.+..+.++|
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~s~~--~~~~-~g~--~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~G 98 (347)
T PRK09196 24 NVNNLEQVQAIMEAADETDSPVILQASAG--ARKY-AGE--PFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLG 98 (347)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECCcc--Hhhh-CCH--HHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcC
Confidence 4455554 445577788866666321 1111 111 00123444445555 49999875333 567888999999
Q ss_pred CCEEE--eCCC------CCch-------hHHHHHHhcCCCCc--E--E-----------------------EecCCHHHH
Q 021609 115 IDYVD--ESEV------LTPA-------DEENHINKHNFRIP--F--V-----------------------CGCRNLGEA 152 (310)
Q Consensus 115 ad~Vi--~~~~------~~~~-------~~~~~i~~~~~~i~--~--~-----------------------v~~~t~~ea 152 (310)
.+-|- .+.. ++.+ ++.++....+..+. + + .-.+++++|
T Consensus 99 ftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA 178 (347)
T PRK09196 99 FTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEA 178 (347)
T ss_pred CCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHH
Confidence 99993 4432 0222 23333322221100 0 0 003567888
Q ss_pred HHHH-HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeeccc-ChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCC
Q 021609 153 LRRI-REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNM-DDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAA 229 (310)
Q Consensus 153 ~~~~-~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~-~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~ 229 (310)
.+-. +.|+|.+.+.-.+ -+ ..++.. .+ +...-+++.+++|++.+ ++|++.=.+
T Consensus 179 ~~Fv~~TgvD~LAvaiGT--~H---------------G~Yk~~~~p-------~~~~LdfdrL~eI~~~v~~vPLVLHGg 234 (347)
T PRK09196 179 ADFVKKTQVDALAIAIGT--SH---------------GAYKFTRKP-------TGDVLAIDRIKEIHARLPNTHLVMHGS 234 (347)
T ss_pred HHHHHHhCcCeEhhhhcc--cc---------------CCCCCCCCC-------ChhhccHHHHHHHHhcCCCCCEEEeCC
Confidence 8865 5688887654211 01 011100 00 00113578899998887 799875444
Q ss_pred CCCC--------------------CHHHHHHHHHcCCCEEEEcccccc
Q 021609 230 GGVA--------------------TPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 230 GGI~--------------------t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.|+. ..+++.++.+.|..=|=++|.+..
T Consensus 235 SG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~ 282 (347)
T PRK09196 235 SSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRL 282 (347)
T ss_pred CCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHH
Confidence 4441 358899999999999999998874
No 464
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=90.71 E-value=4 Score=33.29 Aligned_cols=53 Identities=25% Similarity=0.390 Sum_probs=33.0
Q ss_pred HHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 212 LVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 212 ~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+++.+++.. +++++ + ||....++..++.++|.|++. ....++...++.+.+.+
T Consensus 73 ~~~~L~~~g~~~i~vi--v-GG~~~~~~~~~l~~~Gvd~~~-----~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 73 LRKELDKLGRPDILVV--V-GGVIPPQDFDELKEMGVAEIF-----GPGTPIPESAIFLLKKL 127 (132)
T ss_pred HHHHHHhcCCCCCEEE--E-eCCCChHhHHHHHHCCCCEEE-----CCCCCHHHHHHHHHHHH
Confidence 444455432 45665 3 665467789998899999986 22235666666665544
No 465
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=90.70 E-value=0.4 Score=44.51 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=47.0
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc----ccccCCCHHHHHHHHHHHHhc
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS----GVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs----ai~~a~dp~~~a~~l~~~i~~ 274 (310)
-.|+.+++++..+++|+++ -||-+.+|+..+.+.|++|++|.. -+=..+-+-....+++.+++.
T Consensus 210 l~W~Di~wLr~~T~LPIvv---KGilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ 277 (363)
T KOG0538|consen 210 LSWKDIKWLRSITKLPIVV---KGVLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEG 277 (363)
T ss_pred CChhhhHHHHhcCcCCeEE---EeecccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcC
Confidence 3488899999999999984 799999999999999999999964 222222233444455666553
No 466
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.53 E-value=4.7 Score=35.66 Aligned_cols=75 Identities=33% Similarity=0.399 Sum_probs=51.8
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCC---CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCC
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVAR---MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGI 115 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~---~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGa 115 (310)
+..+.+.+.++.+.+.|++.+ .+.+. ..+|... ....+.++++++.+++|+++...+...+++..+.+.|+
T Consensus 106 i~~v~~~~~~~~~~~~gad~i-~~~~~-----~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~Ga 179 (236)
T cd04730 106 IPTVTSVEEARKAEAAGADAL-VAQGA-----EAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGA 179 (236)
T ss_pred EEeCCCHHHHHHHHHcCCCEE-EEeCc-----CCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCC
Confidence 344556678888888999987 33211 0011111 12357888888888999999877776677888889999
Q ss_pred CEEE
Q 021609 116 DYVD 119 (310)
Q Consensus 116 d~Vi 119 (310)
|+|.
T Consensus 180 dgV~ 183 (236)
T cd04730 180 DGVQ 183 (236)
T ss_pred cEEE
Confidence 9996
No 467
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=90.48 E-value=2.3 Score=38.77 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=55.6
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc--------CChhh
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY--------SDPEV 280 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~--------~~~~~ 280 (310)
.++.+..+++.+++|++. -==|-++-++.++..+|||+|++--+++. + ...++|.+..++. .+++.
T Consensus 97 s~~dL~~v~~~~~~PvL~--KDFIid~~QI~eA~~~GADaVLLI~~~L~---~-~~l~~l~~~a~~lGle~lVEVh~~~E 170 (254)
T PF00218_consen 97 SLEDLRAVRKAVDLPVLR--KDFIIDPYQIYEARAAGADAVLLIAAILS---D-DQLEELLELAHSLGLEALVEVHNEEE 170 (254)
T ss_dssp HHHHHHHHHHHSSS-EEE--ES---SHHHHHHHHHTT-SEEEEEGGGSG---H-HHHHHHHHHHHHTT-EEEEEESSHHH
T ss_pred CHHHHHHHHHHhCCCccc--ccCCCCHHHHHHHHHcCCCEeehhHHhCC---H-HHHHHHHHHHHHcCCCeEEEECCHHH
Confidence 356677788778899986 12244899999999999999999999995 3 3344555554432 22333
Q ss_pred hhhhhhhcccchhcccCccch
Q 021609 281 LAEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~ 301 (310)
+. .....|..+.|+|-+|++
T Consensus 171 l~-~al~~~a~iiGINnRdL~ 190 (254)
T PF00218_consen 171 LE-RALEAGADIIGINNRDLK 190 (254)
T ss_dssp HH-HHHHTT-SEEEEESBCTT
T ss_pred HH-HHHHcCCCEEEEeCcccc
Confidence 32 233668999999988764
No 468
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=90.38 E-value=1.1 Score=42.19 Aligned_cols=80 Identities=34% Similarity=0.357 Sum_probs=54.5
Q ss_pred CHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccCcHHHHHHHHH-cCCCEEE-
Q 021609 44 TPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIGHFVEAQILEA-IGIDYVD- 119 (310)
Q Consensus 44 ~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~a~~~~~-aGad~Vi- 119 (310)
..+.++.++++|++++ ++-. . +...+. ..-+.+.|.++++.+. +||+.+..+...++++.+.+ .|+|+|.
T Consensus 154 ~~~ia~~~~~~g~~~ltVHgR-t----r~~~y~-~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMi 227 (323)
T COG0042 154 ALEIARILEDAGADALTVHGR-T----RAQGYL-GPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMI 227 (323)
T ss_pred HHHHHHHHHhcCCCEEEEecc-c----HHhcCC-CccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEE
Confidence 4579999999999998 3321 1 111111 1135789999999988 99999987777778866655 8899995
Q ss_pred eCCCCCchhH
Q 021609 120 ESEVLTPADE 129 (310)
Q Consensus 120 ~~~~~~~~~~ 129 (310)
+-..+..+.+
T Consensus 228 gRga~~nP~l 237 (323)
T COG0042 228 GRGALGNPWL 237 (323)
T ss_pred cHHHccCCcH
Confidence 3333444433
No 469
>PRK08508 biotin synthase; Provisional
Probab=90.35 E-value=14 Score=33.87 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=26.2
Q ss_pred HHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 81 PQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 81 ~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.+.++.+++.. ++.+.+.......+.++.+.++|+|.+.
T Consensus 78 ~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 78 AEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYN 117 (279)
T ss_pred HHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEc
Confidence 35666666654 5555444433356888999999999994
No 470
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=90.19 E-value=2.1 Score=38.23 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEE-eCCCC
Q 021609 77 RMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVD-ESEVL 124 (310)
Q Consensus 77 ~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~ 124 (310)
...+++.++++++.+ ++|+.+...+...++++.+.++|||.|+ ++...
T Consensus 163 ~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~ 212 (223)
T TIGR01768 163 EPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIE 212 (223)
T ss_pred CCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHh
Confidence 345688999999988 9999998888788999999999999996 44443
No 471
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=90.19 E-value=1.9 Score=38.37 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEe
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~ 120 (310)
+....+.+.|+ +++.++ +.. -|+....+++.++++++.+++|+++...++..++++.+.+.|+|+++.
T Consensus 145 ~~~~~~~~~g~-~ii~td-----I~~-dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 145 EVRDFLNSFDY-GLIVLD-----IHS-VGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred HHHHHHHhcCC-EEEEEE-----CCc-cccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 45666677887 653332 221 134345578999999999999999998888888888899999999963
No 472
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=90.04 E-value=8.1 Score=35.43 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=64.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc---C---cHHHHHHHHHcCCCEEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI---G---HFVEAQILEAIGIDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~---~---~~~~a~~~~~aGad~Vi 119 (310)
+.++.+.+.|++.+ .+- ...+|...+.+....+.+++..++|.+....- + .......+.++|++-|+
T Consensus 19 ~~~~~l~~~~pd~i-svT------~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL 91 (272)
T TIGR00676 19 ETVDRLSPLDPDFV-SVT------YGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHIL 91 (272)
T ss_pred HHHHHHhcCCCCEE-Eec------cCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEE
Confidence 45777888889987 331 11123334555677788887788887775322 1 13445667889999885
Q ss_pred -eC-CCC------------CchhHHHHHHhcCCCCcEEEec--------CCH-HH---HHHHHHhCCCEEEEc
Q 021609 120 -ES-EVL------------TPADEENHINKHNFRIPFVCGC--------RNL-GE---ALRRIREGAAMIRTK 166 (310)
Q Consensus 120 -~~-~~~------------~~~~~~~~i~~~~~~i~~~v~~--------~t~-~e---a~~~~~~Gad~V~v~ 166 (310)
.. |.. ...++++.+++...++.+++.+ .+. ++ .++..++|++++.+.
T Consensus 92 ~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ 164 (272)
T TIGR00676 92 ALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQ 164 (272)
T ss_pred EeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeec
Confidence 22 111 1235566665533344444443 222 22 223456788887665
No 473
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=89.88 E-value=17 Score=33.86 Aligned_cols=45 Identities=24% Similarity=0.507 Sum_probs=29.4
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH---HcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 221 RLPVVHFAAGGVATPADAAMMM---QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l---~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
+..++ .|+.+.++++-++ +.|+|||++- ++||... +.+.+.+++.
T Consensus 145 ~~kli----A~V~saeEA~vA~eTLE~GaDgVll~-----~~d~~eI-k~~~~~~~e~ 192 (376)
T COG1465 145 KVKLI----AGVKSAEEARVALETLEKGADGVLLD-----SDDPEEI-KKTAEVVEEA 192 (376)
T ss_pred ceEEE----EEeccHHHHHHHHHHHhccCceEEeC-----CCCHHHH-HHHHHHHHHh
Confidence 34555 5888998887766 5799999865 4577543 3344444443
No 474
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=89.77 E-value=16 Score=33.38 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCEEEeCC--CC------CchhH------HHHHHhcCCCCcEEEec--CCHHHHHH-HHHhCCCEEEEcC
Q 021609 105 VEAQILEAIGIDYVDESE--VL------TPADE------ENHINKHNFRIPFVCGC--RNLGEALR-RIREGAAMIRTKG 167 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~--~~------~~~~~------~~~i~~~~~~i~~~v~~--~t~~ea~~-~~~~Gad~V~v~g 167 (310)
.+++.+++.|+|+|+..+ +. .++.. ...+++ ..++++++.+ ++..++.. +...|+++|.+..
T Consensus 33 ~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~-~~~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~ 111 (254)
T PF03437_consen 33 REAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRR-EVSVPVGVNVLRNDPKAALAIAAATGADFIRVNV 111 (254)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHH-hCCCCEEeeeecCCCHHHHHHHHHhCCCEEEecC
Confidence 578999999999997332 11 22221 122222 3467777774 35555555 4467999999775
Q ss_pred CC
Q 021609 168 EA 169 (310)
Q Consensus 168 ~~ 169 (310)
+.
T Consensus 112 ~~ 113 (254)
T PF03437_consen 112 FV 113 (254)
T ss_pred EE
Confidence 53
No 475
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=89.60 E-value=2 Score=39.23 Aligned_cols=91 Identities=11% Similarity=0.053 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCC---CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVAR---MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~---~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~ 122 (310)
+.|+.+.+.||+.| +++...+......-+.. .+....++.+++.+++|+.+... ..+.++.+.++|++.+--..
T Consensus 27 ~~a~~~~~~GA~iI-DIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~--~~~vi~~al~~G~~iINsis 103 (257)
T TIGR01496 27 AHAERMLEEGADII-DVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTY--RAEVARAALEAGADIINDVS 103 (257)
T ss_pred HHHHHHHHCCCCEE-EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCC--CHHHHHHHHHcCCCEEEECC
Confidence 57888899999976 87622111110000000 00112334445556899887665 33677888889999884222
Q ss_pred CCCchhHHHHHHhcCCC
Q 021609 123 VLTPADEENHINKHNFR 139 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~ 139 (310)
.....+..+.+++++..
T Consensus 104 ~~~~~~~~~l~~~~~~~ 120 (257)
T TIGR01496 104 GGQDPAMLEVAAEYGVP 120 (257)
T ss_pred CCCCchhHHHHHHcCCc
Confidence 22244555666554433
No 476
>PLN02561 triosephosphate isomerase
Probab=89.59 E-value=7.7 Score=35.36 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=27.9
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEcccccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFK 257 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~ 257 (310)
++||+ -+|+| +++++.+++ ..++||++||++=++
T Consensus 204 ~i~IL--YGGSV-~~~N~~~l~~~~~iDG~LVG~ASL~ 238 (253)
T PLN02561 204 TTRII--YGGSV-TGANCKELAAQPDVDGFLVGGASLK 238 (253)
T ss_pred cceEE--EeCCc-CHHHHHHHhcCCCCCeEEEehHhhH
Confidence 57888 47888 588877776 679999999999885
No 477
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=89.55 E-value=3.4 Score=38.31 Aligned_cols=120 Identities=17% Similarity=0.154 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCcEEEeccCC--cccccccCCC---CCCCCHHHHHHHHh---h-c--Ccceeec-cc-c---Cc---HHH
Q 021609 46 EQARVAEEAGACAVMALERV--PADIRSQGGV---ARMSDPQLIKEIKQ---S-V--TIPVMAK-AR-I---GH---FVE 106 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~--~~~~~~~~G~---~~~~~~~~i~~i~~---~-~--~iPv~vk-~~-~---~~---~~~ 106 (310)
..++.++++|+.++ .++.+ |+.-...++. ......+.+++|+. + . +++|++. +. . +. .+.
T Consensus 96 r~V~~l~~aGvaGi-~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~R 174 (285)
T TIGR02320 96 RLVRKLERRGVSAV-CIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKR 174 (285)
T ss_pred HHHHHHHHcCCeEE-EEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHH
Confidence 46889999999997 66532 2211111211 12233345555543 2 2 3455554 11 1 11 356
Q ss_pred HHHHHHcCCCEEEeCC-CCCchhHHHHHHhcC---CCCcEEEecC--CHHHHHHHHHhCCCEEEEc
Q 021609 107 AQILEAIGIDYVDESE-VLTPADEENHINKHN---FRIPFVCGCR--NLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~-~~~~~~~~~~i~~~~---~~i~~~v~~~--t~~ea~~~~~~Gad~V~v~ 166 (310)
++.+.++|||.|.... ..+..++.++.+... +.+++++-.. .......+.++|+..|...
T Consensus 175 a~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~ 240 (285)
T TIGR02320 175 AEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYA 240 (285)
T ss_pred HHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEh
Confidence 7889999999997553 345666666665522 2334433111 1113556778899988753
No 478
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=89.55 E-value=0.84 Score=43.36 Aligned_cols=88 Identities=33% Similarity=0.357 Sum_probs=63.0
Q ss_pred ecchhhhhhC---cccccCCCHHHHHHHHHcCCcEEEeccCCcccccccC--CC--CCCCCHHHHHHHHhhcC-cceeec
Q 021609 27 KVGLAQMLRG---GVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQG--GV--ARMSDPQLIKEIKQSVT-IPVMAK 98 (310)
Q Consensus 27 ~~~~~~~~~~---g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~--G~--~~~~~~~~i~~i~~~~~-iPv~vk 98 (310)
-.+.++.++. -.+..+.+...|+++++.|+|.++.-. ..+.| |. .......++.++++.++ +||++-
T Consensus 116 ~~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g-----~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAA 190 (336)
T COG2070 116 PAEFVARLKAAGIKVIHSVITVREALKAERAGADAVIAQG-----AEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAA 190 (336)
T ss_pred cHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEecC-----CcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEe
Confidence 3445554442 356677888999999999999884321 01111 21 12334678999999999 999998
Q ss_pred cccCcHHHHHHHHHcCCCEEE
Q 021609 99 ARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 99 ~~~~~~~~a~~~~~aGad~Vi 119 (310)
..+.+...+..++..||++|-
T Consensus 191 GGI~dg~~i~AAlalGA~gVq 211 (336)
T COG2070 191 GGIADGRGIAAALALGADGVQ 211 (336)
T ss_pred cCccChHHHHHHHHhccHHHH
Confidence 888777888999999999993
No 479
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=89.37 E-value=3.3 Score=37.93 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=28.1
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
+++||| +++.+......|.|.+.+|+.++..
T Consensus 243 ~~Sggi-~~~~i~~~~~~gvd~~gvG~~~~~~ 273 (281)
T cd00516 243 EASGGL-DEENIRAYAETGVDVFGVGTLLHSA 273 (281)
T ss_pred EEeCCC-CHHHHHHHHHcCCCEEEeCcccccC
Confidence 389999 5999999999999999999999974
No 480
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=89.35 E-value=20 Score=34.16 Aligned_cols=58 Identities=7% Similarity=0.068 Sum_probs=43.9
Q ss_pred cHHHHHHHhhcC---------CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 209 PYDLVMQTKQLG---------RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 209 ~~~~i~~i~~~~---------~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+++.++.+++.+ ++|+++=.+.|+ +.++++++.+.|..=|=++|.+.. ...+.+.+.+
T Consensus 228 d~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGi-pde~i~~ai~~GI~KINi~T~l~~-----a~~~~~~~~~ 294 (350)
T PRK09197 228 RPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGS-TLEEIREAVSYGVVKMNIDTDTQW-----AFWRGVLDYY 294 (350)
T ss_pred CHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCC-CHHHHHHHHHCCCeeEEeCcHHHH-----HHHHHHHHHH
Confidence 577888887766 799886556676 469999999999999999998874 3444455544
No 481
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=89.33 E-value=19 Score=33.77 Aligned_cols=96 Identities=13% Similarity=0.209 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC-CC---CCHHHHHHHHhhc-Ccceeec----------------c-ccCc
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA-RM---SDPQLIKEIKQSV-TIPVMAK----------------A-RIGH 103 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~-~~---~~~~~i~~i~~~~-~iPv~vk----------------~-~~~~ 103 (310)
+.++.+.+.|..+++.. +.|..... .|+. .. ...+.++.+|+.+ ++-|+.. . .+..
T Consensus 65 ~~~~~~~~~Gi~~v~lF-gv~~~Kd~-~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGil~~g~i~N 142 (322)
T PRK13384 65 DEIERLYALGIRYVMPF-GISHHKDA-KGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLHNDEVDN 142 (322)
T ss_pred HHHHHHHHcCCCEEEEe-CCCCCCCC-CcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCCCceeeccCCcCcc
Confidence 56788889999987322 22222222 2222 11 1245677777765 4334332 0 1111
Q ss_pred HH-------HHHHHHHcCCCEEEeCCCCC--chhHHHHHHhcCCC-CcEE
Q 021609 104 FV-------EAQILEAIGIDYVDESEVLT--PADEENHINKHNFR-IPFV 143 (310)
Q Consensus 104 ~~-------~a~~~~~aGad~Vi~~~~~~--~~~~~~~i~~~~~~-i~~~ 143 (310)
.+ .+-...++|||.|--++-+. ...+++.+...++. +.++
T Consensus 143 D~Tl~~L~~~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~~~v~Im 192 (322)
T PRK13384 143 DATVENLVKQSVTAAKAGADMLAPSAMMDGQVKAIRQGLDAAGFEHVAIL 192 (322)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEecccccccHHHHHHHHHHHCCCCCCcee
Confidence 22 22333459999996444333 33455556555553 4443
No 482
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=89.29 E-value=23 Score=34.61 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=43.2
Q ss_pred CCEEEeCCCCCCCHHHHHHHH-HcC-CCEEEE-ccccccCC-CHHHHHHHHHHHHhccCChh
Q 021609 222 LPVVHFAAGGVATPADAAMMM-QLG-CDGVFV-GSGVFKSG-DPVKRAQAIVRAVTHYSDPE 279 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l-~~G-adgV~V-Gsai~~a~-dp~~~a~~l~~~i~~~~~~~ 279 (310)
.|+ .+||+ ++..+.+++ ..| -|-++. |..++.++ .|..-+++++++++.+.+..
T Consensus 333 ~Pv---~sgG~-~~~~vp~~~~~~G~~Dvi~~aGGGi~gHP~G~~aGa~A~rqA~ea~~~G~ 390 (406)
T cd08207 333 MPV---FSSGQ-WGGQAPPTYRRLGSVDLLYLAGGGIMAHPDGPAAGVRSLRQAWEAAVAGV 390 (406)
T ss_pred eEe---ccCCC-CHhHHHHHHHHhCCCceEEecCCceecCCCCchhHHHHHHHHHHHHHcCC
Confidence 577 69999 699999998 578 576655 99999964 67788889999998876543
No 483
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=89.20 E-value=7.5 Score=32.89 Aligned_cols=115 Identities=20% Similarity=0.168 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh--cCcceeeccccC---cHHH----HHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS--VTIPVMAKARIG---HFVE----AQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~--~~iPv~vk~~~~---~~~~----a~~~~~aGad 116 (310)
+.++.+.+.||+++...-|. .... .+. .....+.++++++. .++|+++..... ..+. ++.+.+.|++
T Consensus 69 ~~a~~a~~~Gad~i~v~~~~--~~~~-~~~-~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~ 144 (201)
T cd00945 69 AEVEEAIDLGADEIDVVINI--GSLK-EGD-WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGAD 144 (201)
T ss_pred HHHHHHHHcCCCEEEEeccH--HHHh-CCC-HHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 67899999999998322110 0000 000 00114667777777 489999865432 1122 2345679999
Q ss_pred EEEeCCC-----CCchhHHHHHHhcCCC--CcEEEecCCHHHHHHHHHhCCCEEE
Q 021609 117 YVDESEV-----LTPADEENHINKHNFR--IPFVCGCRNLGEALRRIREGAAMIR 164 (310)
Q Consensus 117 ~Vi~~~~-----~~~~~~~~~i~~~~~~--i~~~v~~~t~~ea~~~~~~Gad~V~ 164 (310)
+|-.+.. .....+....+....+ +.+..+..+.+.+..+...|++.+.
T Consensus 145 ~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~ 199 (201)
T cd00945 145 FIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIG 199 (201)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceee
Confidence 9942222 1334444433333223 3334445567888888888888764
No 484
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=89.04 E-value=5 Score=38.20 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=27.3
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.++||| +++++.++.++ +|.+.||+.++.+
T Consensus 265 eaSGgI-~~~ni~~ya~~-vD~isvGs~~~~a 294 (343)
T PRK08662 265 FVSGGL-DPERIRELRDV-VDGFGVGTYISFA 294 (343)
T ss_pred EEeCCC-CHHHHHHHHHh-CCEEEcCccccCC
Confidence 389999 79999999999 9999999999974
No 485
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=89.02 E-value=20 Score=33.67 Aligned_cols=91 Identities=23% Similarity=0.253 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC-CC---CCHHHHHHHHhhc-Ccceeecc-----------------ccCc
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA-RM---SDPQLIKEIKQSV-TIPVMAKA-----------------RIGH 103 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~-~~---~~~~~i~~i~~~~-~iPv~vk~-----------------~~~~ 103 (310)
+.++.+.+.|..++ .|=+.|..... .|+. .. .....++.+|+.+ ++-++... .+..
T Consensus 63 ~~v~~~~~~Gi~av-~LFgv~~~Kd~-~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~YT~hGHcGil~~g~idN 140 (323)
T PRK09283 63 KEAEEAVELGIPAV-ALFGVPELKDE-DGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGILEDGYVDN 140 (323)
T ss_pred HHHHHHHHCCCCEE-EEeCcCCCCCc-ccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCCCCCCceecccCCcCcC
Confidence 56888899999987 22222222222 2222 11 1235677777765 44444320 0111
Q ss_pred H-------HHHHHHHHcCCCEEEeCCCCC--chhHHHHHHhcCC
Q 021609 104 F-------VEAQILEAIGIDYVDESEVLT--PADEENHINKHNF 138 (310)
Q Consensus 104 ~-------~~a~~~~~aGad~Vi~~~~~~--~~~~~~~i~~~~~ 138 (310)
. +.+-...++|||.|--++-+. ...+++.+...++
T Consensus 141 D~Tl~~L~~~Al~~A~AGaDiVAPSdMMDGrV~aIR~aLd~~g~ 184 (323)
T PRK09283 141 DETLELLAKQALSQAEAGADIVAPSDMMDGRVGAIREALDEAGF 184 (323)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEcccccccHHHHHHHHHHHCCC
Confidence 2 223334459999996444333 3344555555554
No 486
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=88.91 E-value=1.2 Score=39.28 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC---CCCCHHHHHHHHh-hcCcceeeccccCcHHHHHHHHHcCCCEEEeC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA---RMSDPQLIKEIKQ-SVTIPVMAKARIGHFVEAQILEAIGIDYVDES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~---~~~~~~~i~~i~~-~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~ 121 (310)
..|+.+.+.||+.| ++|..++......-+. +.+....++.+++ ..++|+.+..+ ..+.++.+.++|++.+.-.
T Consensus 23 ~~a~~~~~~GAdiI-DIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~--~~~v~~~aL~~g~~~ind~ 99 (210)
T PF00809_consen 23 KRAREQVEAGADII-DIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTF--NPEVAEAALKAGADIINDI 99 (210)
T ss_dssp HHHHHHHHTT-SEE-EEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES--SHHHHHHHHHHTSSEEEET
T ss_pred HHHHHHHHhcCCEE-EecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC--CHHHHHHHHHcCcceEEec
Confidence 35888999999965 8863322111100000 0011223444444 46899998775 3467788888899999744
Q ss_pred CCCC-chhHHHHHHhc
Q 021609 122 EVLT-PADEENHINKH 136 (310)
Q Consensus 122 ~~~~-~~~~~~~i~~~ 136 (310)
..++ ..+..++++++
T Consensus 100 ~~~~~~~~~~~l~a~~ 115 (210)
T PF00809_consen 100 SGFEDDPEMLPLAAEY 115 (210)
T ss_dssp TTTSSSTTHHHHHHHH
T ss_pred ccccccchhhhhhhcC
Confidence 4433 55555555443
No 487
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=88.80 E-value=6.5 Score=35.40 Aligned_cols=169 Identities=19% Similarity=0.199 Sum_probs=91.3
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC-
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~- 122 (310)
++|..++++||++| +.|. +|.|. -..+++..+++.+..|+=+-... ..+..+.+.+.-.|.|. .++
T Consensus 26 ~aA~~a~~aGAdgITvHlR---eDrRH-------I~d~Dv~~L~~~~~~~lNlE~a~-t~e~~~ia~~~kP~~vtLVPE~ 94 (239)
T PF03740_consen 26 EAARIAEEAGADGITVHLR---EDRRH-------IQDRDVRRLRELVKTPLNLEMAP-TEEMVDIALKVKPDQVTLVPEK 94 (239)
T ss_dssp HHHHHHHHTT-SEEEEEB----TT-SS-------S-HHHHHHHHHH-SSEEEEEEES-SHHHHHHHHHH--SEEEEE--S
T ss_pred HHHHHHHHcCCCEEEeccC---CCcCc-------CCHHHHHHHHHHcccCEEeccCC-CHHHHHHHHhCCcCEEEECCCC
Confidence 67888899999999 6773 11121 12578888888888884443332 34677889999999983 322
Q ss_pred --------CCC----chhHH---HHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 123 --------VLT----PADEE---NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 123 --------~~~----~~~~~---~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
++. ...+. +.++..+..+.++++. +.+....+.+.|+|.|-+|...| ..+..
T Consensus 95 r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP-~~~qi~~A~~~Gad~VELhTG~y----A~a~~-------- 161 (239)
T PF03740_consen 95 REELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDP-DPEQIEAAKELGADRVELHTGPY----ANAFD-------- 161 (239)
T ss_dssp GGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S--HHHHHHHHHTT-SEEEEETHHH----HHHSS--------
T ss_pred CCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCC-CHHHHHHHHHcCCCEEEEehhHh----hhhcC--------
Confidence 121 22333 4444344445566664 56778888899999998874221 11100
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHh------hcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEcccccc
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTK------QLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFK 257 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~------~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~ 257 (310)
..+ ....++++.+. ....+-|- |+.|+ +.+++..+.+ -+..-+-+|-+|+.
T Consensus 162 -------~~~---------~~~~ell~~l~~aa~~a~~lGL~Vn--AGHgL-~y~N~~~i~~i~~i~EvnIGHaiia 219 (239)
T PF03740_consen 162 -------DAE---------EAEEELLERLRDAARYAHELGLGVN--AGHGL-NYDNVRPIAAIPPIEEVNIGHAIIA 219 (239)
T ss_dssp -------HHH---------HHHHHHHHHHHHHHHHHHHTT-EEE--EETT---TTTHHHHHTSTTEEEEEE-HHHHH
T ss_pred -------CHH---------HHHHHHHHHHHHHHHHHHHcCCEEe--cCCCC-CHHHHHHHHhCCCceEEecCHHHHH
Confidence 000 00001111121 12345565 78999 6899988875 47889999988884
No 488
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=88.77 E-value=1.9 Score=40.94 Aligned_cols=74 Identities=28% Similarity=0.376 Sum_probs=53.4
Q ss_pred CHHHHHHHHHcCCcEEEeccCCcccccccCCC-CCCCCHHHHHHHHhhcC-cceeeccccCcHHHHHHHHH-cCCCEEEe
Q 021609 44 TPEQARVAEEAGACAVMALERVPADIRSQGGV-ARMSDPQLIKEIKQSVT-IPVMAKARIGHFVEAQILEA-IGIDYVDE 120 (310)
Q Consensus 44 ~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~-~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~a~~~~~-aGad~Vi~ 120 (310)
+.+.++..+++|++.+..-.+. +...|. .-.-+.+.++.+++... +||+++..+...+++..+.+ .|+|+|-.
T Consensus 157 Tvd~ak~~e~aG~~~ltVHGRt----r~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 157 TVDYAKMLEDAGVSLLTVHGRT----REQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred HHHHHHHHHhCCCcEEEEeccc----HHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 3478999999999988332222 111222 12345789999999886 99999998887788877776 99999953
Q ss_pred C
Q 021609 121 S 121 (310)
Q Consensus 121 ~ 121 (310)
.
T Consensus 233 a 233 (358)
T KOG2335|consen 233 A 233 (358)
T ss_pred c
Confidence 3
No 489
>PLN02858 fructose-bisphosphate aldolase
Probab=88.75 E-value=25 Score=39.83 Aligned_cols=175 Identities=14% Similarity=0.129 Sum_probs=101.9
Q ss_pred HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE--eCCCC
Q 021609 48 ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD--ESEVL 124 (310)
Q Consensus 48 A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi--~~~~~ 124 (310)
.+++++.+...|+++.+. ..+. .|. .....+....+..++||.+.+--+ .++.+..+.++|.+-|- .+. +
T Consensus 1131 i~aAe~~~sPvIl~~~~~--~~~~-~~~---~~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~-l 1203 (1378)
T PLN02858 1131 VAAAEAEKSPAILQVHPG--ALKQ-GGI---PLVSCCIAAAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDGSH-L 1203 (1378)
T ss_pred HHHHHHhCCCEEEECCcc--HHhh-cCH---HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCCC-C
Confidence 445566677766555311 1111 111 123345555667899999975444 46888999999999993 433 2
Q ss_pred Cch-------hHHHHHHhcCC------C-Cc-------EE---EecCCHHHHHHHH-HhCCCEEEEcCCCCCcchHHHHH
Q 021609 125 TPA-------DEENHINKHNF------R-IP-------FV---CGCRNLGEALRRI-REGAAMIRTKGEAGTGNIIEAVR 179 (310)
Q Consensus 125 ~~~-------~~~~~i~~~~~------~-i~-------~~---v~~~t~~ea~~~~-~~Gad~V~v~g~~~~~~~~~~~~ 179 (310)
+.+ ++.++.+..+. | +. .. ...++++++.+-. +-|+|.+.+.-.. -|
T Consensus 1204 ~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt--~H------ 1275 (1378)
T PLN02858 1204 SFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGN--VH------ 1275 (1378)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeeccc--cc------
Confidence 322 33333333221 1 00 00 0034567777755 4588877653111 01
Q ss_pred HHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC---CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 180 HVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG---RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 180 ~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~---~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
..++.. ...-+++.++++++.+ ++|++.=.+.|+ ..+++.++++.|..=|=+++.+.
T Consensus 1276 ---------G~Y~~~----------~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~-~~~~~~~ai~~Gi~KiNi~T~~~ 1335 (1378)
T PLN02858 1276 ---------GKYPAS----------GPNLRLDLLKELRALSSKKGVLLVLHGASGL-PESLIKECIENGVRKFNVNTEVR 1335 (1378)
T ss_pred ---------ccCCCC----------CCccCHHHHHHHHHHhcCCCCcEEEeCCCCC-CHHHHHHHHHcCCeEEEeCHHHH
Confidence 011100 1223588899998877 799876567788 47999999999999999998876
Q ss_pred c
Q 021609 257 K 257 (310)
Q Consensus 257 ~ 257 (310)
.
T Consensus 1336 ~ 1336 (1378)
T PLN02858 1336 T 1336 (1378)
T ss_pred H
Confidence 4
No 490
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=88.61 E-value=1.6 Score=42.63 Aligned_cols=77 Identities=25% Similarity=0.344 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCcEEEecc--CC-c-cc---------c--c-ccCCCCCC----CCHHHHHHHHhhc---CcceeeccccC
Q 021609 46 EQARVAEEAGACAVMALE--RV-P-AD---------I--R-SQGGVARM----SDPQLIKEIKQSV---TIPVMAKARIG 102 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~--~~-~-~~---------~--~-~~~G~~~~----~~~~~i~~i~~~~---~iPv~vk~~~~ 102 (310)
++|+.++++|+++|+..| .. . -+ . + ..+|.+-. ...+.+.++++.+ ++|++....+.
T Consensus 184 ~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~ 263 (420)
T PRK08318 184 EPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIE 263 (420)
T ss_pred HHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcC
Confidence 788999999999996555 11 0 00 1 0 11222111 1357788888876 79999887777
Q ss_pred cHHHHHHHHHcCCCEE-EeCC
Q 021609 103 HFVEAQILEAIGIDYV-DESE 122 (310)
Q Consensus 103 ~~~~a~~~~~aGad~V-i~~~ 122 (310)
..+++..+..+|||.| +.+.
T Consensus 264 s~~da~e~i~aGA~~Vqi~ta 284 (420)
T PRK08318 264 TWRDAAEFILLGAGTVQVCTA 284 (420)
T ss_pred CHHHHHHHHHhCCChheeeee
Confidence 7788888888999999 4444
No 491
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=88.44 E-value=2.8 Score=38.21 Aligned_cols=89 Identities=8% Similarity=-0.014 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC---CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA---RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~---~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~ 121 (310)
+.|+.+.+.||+.| +++...+......-+- +.+....++.+++.+++|+.+..+ ..+.++.+.+.|++.|- ++
T Consensus 28 ~~a~~~~~~GAdiI-DIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~--~~~v~e~al~~G~~iINdis 104 (257)
T cd00739 28 AHAEKMIAEGADII-DIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTF--RAEVARAALEAGADIINDVS 104 (257)
T ss_pred HHHHHHHHCCCCEE-EECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCC--CHHHHHHHHHhCCCEEEeCC
Confidence 57888999999965 8862211111000000 000112445566667899887665 34778889999999884 32
Q ss_pred CCCCchhHHHHHHhcC
Q 021609 122 EVLTPADEENHINKHN 137 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~ 137 (310)
......++.+.+++++
T Consensus 105 g~~~~~~~~~l~~~~~ 120 (257)
T cd00739 105 GGSDDPAMLEVAAEYG 120 (257)
T ss_pred CCCCChHHHHHHHHcC
Confidence 2211245555555543
No 492
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=88.40 E-value=15 Score=35.10 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=31.8
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
..++..+++. +++|+.+=...-+.|++.+.-+.+.|+.-+++.+-+-
T Consensus 101 pg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls 148 (347)
T COG0826 101 PGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELS 148 (347)
T ss_pred HHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCC
Confidence 3344444443 4678776456778888888888888988887666544
No 493
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=88.31 E-value=3.3 Score=37.24 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHhhcCc-ceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 78 MSDPQLIKEIKQSVTI-PVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 78 ~~~~~~i~~i~~~~~i-Pv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
..+++.++++++.++. |+++...+...+.++.+..+|||+|+
T Consensus 169 ~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VV 211 (232)
T PRK04169 169 PVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIV 211 (232)
T ss_pred CCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 4568999999999988 99998888888899999999999996
No 494
>PRK07695 transcriptional regulator TenI; Provisional
Probab=88.22 E-value=4.5 Score=35.12 Aligned_cols=75 Identities=25% Similarity=0.246 Sum_probs=51.0
Q ss_pred cCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 41 DVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 41 ~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
++.+.+.+..+.+.|++.+ .+.+....... .+. .....+.++++++.+++|+++-..++ .+.+..+.+.|+|+|.
T Consensus 101 s~~s~e~a~~a~~~Gadyi-~~g~v~~t~~k-~~~-~~~g~~~l~~~~~~~~ipvia~GGI~-~~~~~~~~~~Ga~gva 175 (201)
T PRK07695 101 SVHSLEEAIQAEKNGADYV-VYGHVFPTDCK-KGV-PARGLEELSDIARALSIPVIAIGGIT-PENTRDVLAAGVSGIA 175 (201)
T ss_pred eCCCHHHHHHHHHcCCCEE-EECCCCCCCCC-CCC-CCCCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 5667788888999999976 44321111111 111 11236788888888899999887764 4678888899999994
No 495
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=88.07 E-value=8.2 Score=35.25 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=51.9
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+..+.+.|++.+.+.|.++-.. .++.++ -.++++.+.+. .++||++ ..
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~-------------------~ls~~E----------r~~l~~~~~~~~~~~~~vi~-gv 73 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAP-------------------TLTDEE----------RKEVIEAVVEAVAGRVPVIA-GV 73 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccc-------------------cCCHHH----------HHHHHHHHHHHhCCCCeEEE-ec
Confidence 4556677999999888654221 122111 12234434333 3689984 34
Q ss_pred CCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 230 GGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 230 GGI~t~~d~~---~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
|+.++.+.+. .+.++|+|++++....+-..++....+-+.+..
T Consensus 74 ~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia 119 (281)
T cd00408 74 GANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVA 119 (281)
T ss_pred CCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHH
Confidence 5544333332 233679999999999887666655555444333
No 496
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=87.93 E-value=3.1 Score=38.61 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=50.5
Q ss_pred CCCHHHHHHHH-HcCCcEE-EeccCCcccccccCCCC---CCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 42 VVTPEQARVAE-EAGACAV-MALERVPADIRSQGGVA---RMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 42 ~~~~~~A~~~~-~~Ga~~i-~~L~~~~~~~~~~~G~~---~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
.|+|+.|+.+. +.|+|++ +.+. .-+|.- --.+++.+++|++.+++|+......| ..++++.+.+.|+
T Consensus 155 yT~peeA~~Fv~~TgvD~LAvaiG-------t~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi 227 (285)
T PRK07709 155 YADPAECKHLVEATGIDCLAPALG-------SVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGT 227 (285)
T ss_pred CCCHHHHHHHHHHhCCCEEEEeec-------ccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCC
Confidence 58998888775 5899988 3331 111111 11357899999999999998876555 4678899999999
Q ss_pred CEE
Q 021609 116 DYV 118 (310)
Q Consensus 116 d~V 118 (310)
..|
T Consensus 228 ~Ki 230 (285)
T PRK07709 228 SKI 230 (285)
T ss_pred eEE
Confidence 998
No 497
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=87.90 E-value=3.8 Score=36.17 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=67.1
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-Eecc-CCcccccccCCCCCCCCHHHHHHHHh--hcCcceeeccccCc----HHHHH
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALE-RVPADIRSQGGVARMSDPQLIKEIKQ--SVTIPVMAKARIGH----FVEAQ 108 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~--~~~iPv~vk~~~~~----~~~a~ 108 (310)
+++....+++.++.+...|+|++ ++|+ ..+...+... +....+.+..++. ..+..+++...-.. .++++
T Consensus 3 ~l~vp~~~~~~~~~a~~~g~D~vilDlEd~~~~~~K~~a---r~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~ 79 (221)
T PF03328_consen 3 GLFVPANSPKMLEKAAASGADFVILDLEDGVPPDEKDEA---REDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLE 79 (221)
T ss_dssp EEEEESTSHHHHHHHHTTCSSEEEEESSTTSSGGGHHHH---HHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHhcCCCEEEEeCcccCCcccchhh---HHHHHHHHHhhcccccccccceecCCCCCcchhhhhhh
Confidence 55677788999999999999988 6886 2222222221 0111223333332 23445665543221 12334
Q ss_pred HHHHcCCCEEEeCCCCCchhHHHHHHh-cCC---------CCcEEEecCCHHHHHHHHH----hCCCEEEE
Q 021609 109 ILEAIGIDYVDESEVLTPADEENHINK-HNF---------RIPFVCGCRNLGEALRRIR----EGAAMIRT 165 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~~~~~~~~~~i~~-~~~---------~i~~~v~~~t~~ea~~~~~----~Gad~V~v 165 (310)
+...|+|+|+.+...+..++....+. ..+ .+.+++-+.|.+-...+.+ -|.+.+.+
T Consensus 80 -~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~ 149 (221)
T PF03328_consen 80 -ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFF 149 (221)
T ss_dssp -HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE
T ss_pred -hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEe
Confidence 88999999988877666666555544 211 2556666666644443322 25555544
No 498
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=87.73 E-value=3.1 Score=38.53 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=52.0
Q ss_pred cCCCHHHHHHHHH-cCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCE
Q 021609 41 DVVTPEQARVAEE-AGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDY 117 (310)
Q Consensus 41 ~~~~~~~A~~~~~-~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~ 117 (310)
..++++.|..+.+ .|+|.+ +.+.+.... +.+. -...++.++++++.+++|+.....-+ ..+.++.+.++|++.
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~---~~~~-~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~k 226 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGK---YKGE-PGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAK 226 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccc---cCCC-CccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence 3678999988876 999987 233211000 0011 12347899999999999998766323 357788899999999
Q ss_pred E-EeCC
Q 021609 118 V-DESE 122 (310)
Q Consensus 118 V-i~~~ 122 (310)
| +.++
T Consensus 227 iNv~T~ 232 (282)
T TIGR01859 227 INIDTD 232 (282)
T ss_pred EEECcH
Confidence 9 4443
No 499
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=87.62 E-value=13 Score=35.17 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCEE-EeCCCCCchhHHHHHHhcCCCCcEEEecC-CHHHHHHHHHhCCCEEEEcCC
Q 021609 104 FVEAQILEAIGIDYV-DESEVLTPADEENHINKHNFRIPFVCGCR-NLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 104 ~~~a~~~~~aGad~V-i~~~~~~~~~~~~~i~~~~~~i~~~v~~~-t~~ea~~~~~~Gad~V~v~g~ 168 (310)
..++..+.++|+|.| +...+.+..+....+++ +..+|+++|+| +...|..+++.|+|-+.+++.
T Consensus 37 v~QI~~L~~aGceiVRvavp~~~~A~al~~I~~-~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPG 102 (346)
T TIGR00612 37 VAQIRALEEAGCDIVRVTVPDRESAAAFEAIKE-GTNVPLVADIHFDYRLAALAMAKGVAKVRINPG 102 (346)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHh-CCCCCEEEeeCCCcHHHHHHHHhccCeEEECCC
Confidence 366788899999999 44444444445555544 56799999987 477888899999999999854
No 500
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=87.61 E-value=3.3 Score=38.35 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=50.6
Q ss_pred ccCCCHHHHHHHH-HcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCC
Q 021609 40 MDVVTPEQARVAE-EAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGID 116 (310)
Q Consensus 40 ~~~~~~~~A~~~~-~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad 116 (310)
.++++++.|+.+. +.|+|.+ +..-+.-.... .. -...++.++++++.+++|+.+....| ..+.++.+.++|++
T Consensus 150 ~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~--~~--~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~ 225 (281)
T PRK06806 150 MLLTSTTEAKRFAEETDVDALAVAIGNAHGMYN--GD--PNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIR 225 (281)
T ss_pred ceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCC--CC--CccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCc
Confidence 3468899888876 5699987 32221111000 10 12347899999999999998766333 35778889999999
Q ss_pred EE
Q 021609 117 YV 118 (310)
Q Consensus 117 ~V 118 (310)
.|
T Consensus 226 ki 227 (281)
T PRK06806 226 KI 227 (281)
T ss_pred EE
Confidence 99
Done!