RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021609
(310 letters)
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 254
Score = 394 bits (1013), Expect = e-140
Identities = 171/254 (67%), Positives = 212/254 (83%)
Query: 35 RGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIP 94
+GGVIMDVV EQA++AE AGA AVMALERVPADIR+ GGVARM+DP +I+E+ +V+IP
Sbjct: 1 KGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIP 60
Query: 95 VMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALR 154
VMAK RIGH+VEA++LEA+G+DY+DESEVLTPADEE HI+K F +PFVCGCR+LGEA R
Sbjct: 61 VMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAAR 120
Query: 155 RIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVM 214
RI EGA+M+RTKGE GTGNI+EAVRH+R V IR + NM +DE+ AK++ AP +++
Sbjct: 121 RIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLR 180
Query: 215 QTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274
+ K+LGRLPVV+FAAGGV TPADAA+MM LG DGVFVGSG+FKS +P K A+AIV A TH
Sbjct: 181 EIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTH 240
Query: 275 YSDPEVLAEVSCGL 288
Y D E++A +S GL
Sbjct: 241 YEDYELIAHLSKGL 254
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 109 bits (274), Expect = 2e-29
Identities = 40/247 (16%), Positives = 88/247 (35%), Gaps = 22/247 (8%)
Query: 27 KVGLAQMLRGGVIMDV-VTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIK 85
K L + L+GG+I+ P + +E G +MA A + R + + IK
Sbjct: 4 KEKLMEQLKGGIIVSCQALPGEPLYSETGGIMPLMAK----AAQEAGAVGIRANSVRDIK 59
Query: 86 EIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCG 145
EI+ +P++ + + + + +EV A + +
Sbjct: 60 EIQAITDLPIIGIIKKDYPPQEPFI------TATMTEVDQLAALNIAVIAMDCTKRDRHD 113
Query: 146 CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205
++ +R+++E + T + D ++++
Sbjct: 114 GLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGI---DFVGTTLSG---YTPYSRQ 167
Query: 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRA 265
A P +++ + V+ A G + +P +A + LG G+ VG + P + A
Sbjct: 168 EAGPDVALIEALCKAGIAVI--AEGKIHSPEEAKKINDLGVAGIVVGGAI---TRPKEIA 222
Query: 266 QAIVRAV 272
+ + A+
Sbjct: 223 ERFIEAL 229
>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus
woesei [TaxId: 2262]}
Length = 224
Score = 89.3 bits (220), Expect = 9e-22
Identities = 41/222 (18%), Positives = 75/222 (33%), Gaps = 16/222 (7%)
Query: 53 EAGACAVMALERVPADIRSQGGVARMSDPQLI--KEIKQSVTIPVMAKARIGHFVEAQIL 110
EA + + + + + GV + PQL+ + I +SV IPV A+ +
Sbjct: 17 EATGKRALEIAKAAEKVYKETGVTIVVAPQLVDLRMIAESVEIPVFAQHIDPIKPGSHTG 76
Query: 111 EAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAG 170
+ + V T + + + +G L + + A
Sbjct: 77 HVLPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVG--LMTMVCSNNPAVSAAVAA 134
Query: 171 TGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAG 230
AV + I V + + I +LV + ++
Sbjct: 135 LNPDYVAVEPPELIGTGIPVSKAK--------PEVITNTVELVKKVNPEVKV----LCGA 182
Query: 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
G++T D ++LG GV + SGV K+ DP K +V +
Sbjct: 183 GISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVSGI 224
>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 243
Score = 83.8 bits (207), Expect = 1e-19
Identities = 30/243 (12%), Positives = 57/243 (23%), Gaps = 71/243 (29%)
Query: 30 LAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQ 89
L ++ + A EA +A E + + V ++
Sbjct: 57 LLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVET 116
Query: 90 SVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNL 149
+ K V + R GC
Sbjct: 117 LKAAEQLVKDGFDVMVYT------------------------SDDPIIARQLAEIGC--- 149
Query: 150 GEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 209
+ + + ++ +
Sbjct: 150 -----------IAVMPLAGLIGSGLGICNPYNLRIILEEA-------------------- 178
Query: 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269
V GV T +DAA+ M+LGC+ V + + + + DPV A+A+
Sbjct: 179 -------------KVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMK 225
Query: 270 RAV 272
A+
Sbjct: 226 HAI 228
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 71.8 bits (175), Expect = 2e-15
Identities = 43/259 (16%), Positives = 75/259 (28%), Gaps = 58/259 (22%)
Query: 33 MLRGGVIMDVVTPEQARVAE---EAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQ 89
ML G+I+ QA E + + MAL A R + + I IK+
Sbjct: 2 MLPHGLIVSC----QALPDEPLHSSFIMSKMAL----AAYEGGAVGIRANTKEDILAIKE 53
Query: 90 SVTIPVMAKARIGHFVEAQILEA----------IGIDYV------DESEVLTPADEENHI 133
+V +PV+ + + + A + + + T + ++I
Sbjct: 54 TVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYI 113
Query: 134 NKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRN 193
H + + + EA R G I T T + +
Sbjct: 114 RTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDF--------- 164
Query: 194 MDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
+ Q V+ A G V TP +M LG VG
Sbjct: 165 -----------------QFLKDVLQSVDAKVI--AEGNVITPDMYKRVMDLGVHCSVVGG 205
Query: 254 GVFKSGDPVKRAQAIVRAV 272
+ P + + V+ +
Sbjct: 206 AI---TRPKEITKRFVQVM 221
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 61.0 bits (148), Expect = 2e-11
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 219 LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274
+ + V G+ +P DAA M+LG DGV + + V + DPVK A+A+ AV
Sbjct: 173 IEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVEA 228
>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax
[TaxId: 2271]}
Length = 226
Score = 48.0 bits (113), Expect = 3e-07
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275
G+ + D A ++LG GV + S K+ DP + + + ++
Sbjct: 179 GAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLSEL 225
>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 226
Score = 43.3 bits (101), Expect = 1e-05
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250
L + E + + + +Q +P+V T +AA ++Q G DGV
Sbjct: 141 LGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGG---ITIDNAAPVIQAGADGVS 197
Query: 251 VGSGVFKSGDPVKRAQAIVRAVTHY 275
+ S + ++ DP A+ + Y
Sbjct: 198 MISAISQAEDPESAARKFREEIQTY 222
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 42.9 bits (100), Expect = 1e-05
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 213 VMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
+ +++ + A G +A +++ G DG+ V S V + D K + + + V
Sbjct: 142 LEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIV 201
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 41.3 bits (96), Expect = 5e-05
Identities = 15/135 (11%), Positives = 34/135 (25%), Gaps = 18/135 (13%)
Query: 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ 218
A + A A+ + GD+++ + A +V +
Sbjct: 78 NADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSR 137
Query: 219 LGRLPVVHF------------------AAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260
+ V + G D + + G + +
Sbjct: 138 DAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAAS 197
Query: 261 PVKRAQAIVRAVTHY 275
PV+ A+ R++
Sbjct: 198 PVEAARQFKRSIAEL 212
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 40.3 bits (93), Expect = 2e-04
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 4/127 (3%)
Query: 135 KHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNI--IEAVRHVRSVMGDIRVLR 192
+ +IPF + I A G T + + ++ + + +
Sbjct: 167 RQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGK 226
Query: 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252
V A + A + + L P++ A GG+ + + G + V
Sbjct: 227 RTTYGGVSGTAIRPIALRAVTTIARALPGFPIL--ATGGIDSAESGLQFLHSGASVLQVC 284
Query: 253 SGVFKSG 259
S V
Sbjct: 285 SAVQNQD 291
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 247
Score = 39.3 bits (91), Expect = 3e-04
Identities = 31/210 (14%), Positives = 70/210 (33%), Gaps = 28/210 (13%)
Query: 76 ARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILE--AIGIDYVDESEVLTPADEENHI 133
+ + +I E K+ P ++ +E A+G+ + E + + E
Sbjct: 40 NKRNITAIIAEYKRKS--PSGLDVERDPIEYSKFMERYAVGLSILTEEKYFNGSYETLRK 97
Query: 134 NKHNFRIPFVC-----GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDI 188
+ IP + + +A ++ + + + RS +
Sbjct: 98 IASSVSIPILMKDFIVKESQIDDA--YNLGADTVLLIVKILTERELESLLEYARSYG--M 153
Query: 189 RVLRNMDDDEVFTFAKKIAAP------YDLVMQTKQLG-------RLP--VVHFAAGGVA 233
L ++D+ A +I A DL +P VV A G++
Sbjct: 154 EPLIEINDENDLDIALRIGARFIGINSRDLETLEINKENQRKLISMIPSNVVKVAESGIS 213
Query: 234 TPADAAMMMQLGCDGVFVGSGVFKSGDPVK 263
+ + +LG + +GS + ++ + +K
Sbjct: 214 ERNEIEELRKLGVNAFLIGSSLMRNPEKIK 243
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 37.1 bits (85), Expect = 0.001
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270
L+ + K++ PV G++ P + Q G DGV +GS A+VR
Sbjct: 190 SLIQEVKKVTNKPVA--VGFGISKPEHVKQIAQWGADGVIIGS-------------AMVR 234
Query: 271 AVTHYSDPE 279
+ + P+
Sbjct: 235 QLGEAASPK 243
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 36.9 bits (84), Expect = 0.002
Identities = 13/56 (23%), Positives = 19/56 (33%)
Query: 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKR 264
P L + + + + GGVA D M G V VG+ F +
Sbjct: 227 PVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPK 282
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 34.3 bits (78), Expect = 0.011
Identities = 17/114 (14%), Positives = 33/114 (28%), Gaps = 8/114 (7%)
Query: 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ 218
G + +++ V V + + E + + +
Sbjct: 111 GVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATV-------AKWRD 163
Query: 219 LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
L GGV + G + GS +FK+ D V + Q + A+
Sbjct: 164 EKGLSFDIEVDGGV-DNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 216
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 34.1 bits (78), Expect = 0.020
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 228 AAGGVATPADAAMMMQLGCDGVFVGSG 254
GG+ T D + LG + +G+
Sbjct: 647 TDGGLKTGRDIVIAAMLGAEEFGIGTA 673
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 34.2 bits (78), Expect = 0.020
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 227 FAAGGVATPADAAMMMQLGCDGVFVGSG 254
A GG+ T D M +G + GS
Sbjct: 673 RADGGLKTGWDVVMAALMGAEEYGFGSI 700
>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Escherichia coli [TaxId: 562]}
Length = 231
Score = 33.4 bits (75), Expect = 0.024
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268
+ TP A + G D + +G V +S DP + +AI
Sbjct: 193 IMTPEQA---LSAGVDYMVIGRPVTQSVDPAQTLKAI 226
>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Bacillus subtilis [TaxId: 1423]}
Length = 237
Score = 33.3 bits (75), Expect = 0.027
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268
VATPA A + G + VG + K+ DPVK +A+
Sbjct: 197 VATPAIA---REKGSSAIVVGRSITKAEDPVKAYKAV 230
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase
{Plasmodium falciparum [TaxId: 5833]}
Length = 409
Score = 33.4 bits (75), Expect = 0.034
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
++P++ A+GG+ + DA ++ G + S + +G
Sbjct: 341 KQIPII--ASGGIFSGLDALEKIEAGASVCQLYSCLVFNG 378
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 477
Score = 32.7 bits (73), Expect = 0.053
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 222 LPVVHFAAGGVA---TPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDP 278
V GG+A A+ A + GV F QAI R V +Y DP
Sbjct: 390 CIPVVARTGGLADTVIDANHAALASKAATGV-----QFSPVTLDGLKQAIRRTVRYYHDP 444
Query: 279 EVLAEVS 285
++ ++
Sbjct: 445 KLWTQMQ 451
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 221
Score = 32.1 bits (72), Expect = 0.055
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275
G + G + + G+ +F + DP + +V Y
Sbjct: 177 GGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQKY 221
>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 336
Score = 32.6 bits (73), Expect = 0.056
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
GRLP++ GG+ + A + G V + SG G
Sbjct: 288 GRLPII--GVGGIDSVIAAREKIAAGASLVQIYSGFIFKG 325
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 32.0 bits (72), Expect = 0.068
Identities = 30/234 (12%), Positives = 66/234 (28%), Gaps = 41/234 (17%)
Query: 37 GVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVM 96
G+I +V E A GA AV +K ++++V +P++
Sbjct: 60 GLIREVDPVEAALAYARGGARAVSV---------LTEPHRFGGSLLDLKRVREAVDLPLL 110
Query: 97 AKARIGHFVEAQILEAIGID-YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRR 155
K + + A G + +L + + E
Sbjct: 111 RKDFVVDPFMLEEARAFGASAALLIVALLGELTGAYLEEARRLGLEALVEVHTERELEIA 170
Query: 156 IREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQ 215
+ GA ++ + + D + A + +
Sbjct: 171 LEAGAEVL-------------GINNR--------------DLATLHINLETAPRLGRLAR 203
Query: 216 TKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269
+ G + V A G + + + D V +G+ + ++ D + +V
Sbjct: 204 KRGFGGVLV---AESGYSRKEELKALEG-LFDAVLIGTSLMRAPDLEAALRELV 253
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 221
Score = 31.6 bits (71), Expect = 0.075
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268
GG+ P + +++ G + + GS VF + + + +
Sbjct: 178 GGL-KPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGV 215
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 31.8 bits (71), Expect = 0.089
Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 201 TFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS-G 259
+ + L+ + K+ P G+++P + ++ G G GS + K
Sbjct: 185 AENRGALPLHHLIEKLKEYHAAPA--LQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIE 242
Query: 260 DPVKRAQAIVRAVTHY 275
+ + ++ + +
Sbjct: 243 KNLASPKQMLAELRSF 258
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 230
Score = 31.6 bits (71), Expect = 0.093
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268
GGV P +A +++ G + + GS VF + D + + I
Sbjct: 186 GGV-GPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGI 223
>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS
{Escherichia coli [TaxId: 562]}
Length = 254
Score = 31.6 bits (71), Expect = 0.093
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 228 AAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269
+ G+ T A + +G +GS + D + ++
Sbjct: 213 SESGINTYAQVRELSH-FANGFLIGSALMAHDDLHAAVRRVL 253
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 367
Score = 31.5 bits (70), Expect = 0.11
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
GR+P++ GGV++ DA ++ G V + + + G
Sbjct: 297 GRVPII--GVGGVSSGQDALEKIRAGASLVQLYTALTFWG 334
>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Pyrococcus horikoshii [TaxId:
53953]}
Length = 206
Score = 31.1 bits (69), Expect = 0.12
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 233 ATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269
DA ++ G D + VG ++ + +P + A+AI
Sbjct: 169 GKAKDA---VKAGADYIIVGRAIYNAPNPREAAKAIY 202
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice
(Oryza sativa) [TaxId: 4530]}
Length = 220
Score = 31.0 bits (69), Expect = 0.14
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 228 AAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
GG+ P+ + G + + GS +F + +P + A+ ++V
Sbjct: 173 VDGGL-GPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSV 216
>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme A [TaxId: 1358]}
Length = 311
Score = 31.1 bits (69), Expect = 0.14
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
GG+ T DA + G + +G+ + K G
Sbjct: 245 IIGTGGIETGQDAFEHLLCGATMLQIGTALHKEG 278
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 248
Score = 30.5 bits (68), Expect = 0.18
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 203 AKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----- 257
+ YDL+ + K++ R V GV+ +++ G +GV VGS + K
Sbjct: 173 EEIPKTAYDLLRRAKRICRNKVA--VGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEK 230
Query: 258 SGDPVKRAQAIVRAV 272
+ + + V +
Sbjct: 231 GREATEFLKKKVEEL 245
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 31.0 bits (69), Expect = 0.19
Identities = 34/248 (13%), Positives = 67/248 (27%), Gaps = 26/248 (10%)
Query: 23 PFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQ 82
+ M G + + A AE G ++ R+ + +
Sbjct: 34 TLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILLERPEALR-----SFR 88
Query: 83 LIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPF 142
+ K +++ I + A++ + +L + E+L H+N +
Sbjct: 89 VRKVAPKALLIANLGLAQLRRYGRDDLLRLV--------EMLEADALAFHVNPLQEAVQR 140
Query: 143 VCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVR-----HVRSVMGDIRVLRNMDDD 197
E G G EA + +V +
Sbjct: 141 GDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARV 200
Query: 198 EVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAA--------GGVATPADAAMMMQLGCDGV 249
E + ++ P + + V GGV T D A + LG D +
Sbjct: 201 EEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLL 260
Query: 250 FVGSGVFK 257
V + +
Sbjct: 261 AVARPLLR 268
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma
brucei [TaxId: 5691]}
Length = 312
Score = 30.3 bits (67), Expect = 0.24
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 208 APYDLVMQTKQLGRLPVVHFAA-GGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
P L R P GGV + +A + + G V VG+ + G
Sbjct: 226 LPTALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEG 278
>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis
[TaxId: 1423]}
Length = 229
Score = 29.7 bits (66), Expect = 0.35
Identities = 36/230 (15%), Positives = 65/230 (28%), Gaps = 25/230 (10%)
Query: 44 TPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH 103
EQ + E+G AV+ GG SD + + ++
Sbjct: 21 PDEQLEILCESGTDAVII-----------GG----SDGVTEDNVLRMMSKVRRFLVPCVL 65
Query: 104 FVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMI 163
V A G D VL + + + H + ++ E + I
Sbjct: 66 EVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIV----AEGYCI 121
Query: 164 RTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFT-FAKKIAAPYDLVMQTKQLGRL 222
+ + + +F + + V +TK +
Sbjct: 122 ANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSGVLGDIEAVKKTKAVLET 181
Query: 223 PVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
+ F GG+ A + D + VG+ V++ RA V AV
Sbjct: 182 STL-FYGGGIKDAETAKQYAE-HADVIVVGNAVYED---FDRALKTVAAV 226
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 29.6 bits (66), Expect = 0.37
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 202 FAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV 255
K P + L + A+GG+ + DA + + G D + S V
Sbjct: 171 VYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGADIIGTSSAV 224
>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 28.9 bits (64), Expect = 0.66
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 228 AAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268
A G+ P + + + V VG+ + K+ +P + + +
Sbjct: 207 AESGIKDPRELKDLRG-KVNAVLVGTSIMKAENPRRFLEEM 246
>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus
thermophilus [TaxId: 274]}
Length = 271
Score = 29.0 bits (64), Expect = 0.75
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----SGDPVKRA 265
DLV + K LPV GV+ A AA DGV VGS + +
Sbjct: 191 KDLVRRIKARTALPVA--VGFGVSGKATAAQAA--VADGVVVGSALVRALEEGRSLAPLL 246
Query: 266 QAIVRAV 272
Q I + +
Sbjct: 247 QEIRQGL 253
>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
phosphate synthase {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 231
Score = 28.5 bits (63), Expect = 0.76
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
+ K L + + GG+ + A M++ D + VG+
Sbjct: 177 LVAEVKKVLDKARLF--YGGGIDSREKAREMLR-YADTIIVGN 216
>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I
{Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}
Length = 418
Score = 29.0 bits (63), Expect = 0.77
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 127 ADEENHINKHNFRIPFVCGCRNLGEALRRIRE 158
++ H+ + R F NL +A +R+
Sbjct: 382 SEPNKHLGEDFVRYCFFKKDENLQKAAEILRK 413
>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase
{Archaeon Thermoproteus tenax [TaxId: 2271]}
Length = 251
Score = 28.8 bits (64), Expect = 0.78
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 19/100 (19%)
Query: 193 NMDDDEVFTFAKKIAAPY--------------DLVMQTKQLGRLPVVHFAAGGVATPADA 238
N E+ +A +IA K G++PV+ T D
Sbjct: 152 NETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDF 211
Query: 239 AMM----MQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274
++ G G+ VG V++ D +K A+A+ + +
Sbjct: 212 LKQVEGVLEAGALGIAVGRNVWQRRDALKFARAL-AELVY 250
>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 28.2 bits (62), Expect = 1.1
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 223 PVVHFAAGG-----VATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268
P + V T + + + +G ++ S +P ++ + I
Sbjct: 150 PGIRMEVKADDQKDVVTLEEM----KGIANFAVLGREIYLSENPREKIKRI 196
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 353
Score = 28.4 bits (62), Expect = 1.2
Identities = 12/96 (12%), Positives = 24/96 (25%), Gaps = 2/96 (2%)
Query: 157 REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216
E +R + + +P +++ Q+
Sbjct: 211 WEALRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQS 270
Query: 217 KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252
PV G +D + LG + V +G
Sbjct: 271 VAKTGKPV--LIDSGFRRGSDIVKALALGAEAVLLG 304
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 251
Score = 27.8 bits (61), Expect = 1.6
Identities = 37/226 (16%), Positives = 68/226 (30%), Gaps = 16/226 (7%)
Query: 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFV 105
E AR +EAGA ++ L+ R ++ + + V IP+ +
Sbjct: 34 EAARAYDEAGADELVFLDISATHEE------RAILLDVVARVAERVFIPLTVGGGVRSLE 87
Query: 106 EAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRT 165
+A+ L G D V V + A + + +A R +
Sbjct: 88 DARKLLLSGADKV---SVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAG 144
Query: 166 KGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVV 225
+ +E + +L +MD D K L + +PV+
Sbjct: 145 GRVPTGLHAVEWAVKGVELGAGEILLTSMDRD-----GTKEGYDLRLTRMVAEAVGVPVI 199
Query: 226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271
A+GG Q G + S P+ + + +
Sbjct: 200 --ASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYLAE 243
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 27.9 bits (61), Expect = 1.6
Identities = 27/227 (11%), Positives = 61/227 (26%), Gaps = 21/227 (9%)
Query: 40 MDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKA 99
M + ++ A A + +P + SQ + +L EI + + A
Sbjct: 43 MTGGGGKLTYEINKSLARA-ASQAGIPLAVGSQMSALKDPSERLSYEIVRKENPNGLIFA 101
Query: 100 RIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREG 159
+G A + + + + + R + + +I
Sbjct: 102 NLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSF-----SGALKRIEQICSR 156
Query: 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVL-----RNMDDDEVFTFAKKIAAPYD--- 211
++ E G G + + + N E ++I+
Sbjct: 157 VSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGI 216
Query: 212 -----LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
L + ++ +GG+ D A + LG +
Sbjct: 217 STAASLAEIRSEFPASTMIA--SGGLQDALDVAKAIALGASCTGMAG 261
>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL
{Escherichia coli [TaxId: 562]}
Length = 382
Score = 27.8 bits (60), Expect = 1.6
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIRE 158
+ + G+ + S I R+ F L A R+R+
Sbjct: 336 WLTQEHGVAAIPLSVFCADPFPHKLI-----RLCFAKKESTLLAAAERLRQ 381
>d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 261
Score = 27.6 bits (60), Expect = 1.9
Identities = 2/38 (5%), Positives = 11/38 (28%), Gaps = 4/38 (10%)
Query: 212 LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249
+ + +++G ++ + + G
Sbjct: 194 ISLLARKIG-AALL---YEDIEANFQLQYAWRNGGRYF 227
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli
[TaxId: 562]}
Length = 255
Score = 27.6 bits (60), Expect = 1.9
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 230 GGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
GG ++AA + Q DG VG K+ IV+A
Sbjct: 210 GGSVNASNAAELFAQPDIDGALVGGASLKADAFAV----IVKAA 249
>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 27.5 bits (60), Expect = 2.1
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270
T D + G D + VG G+F G K R
Sbjct: 217 YRTVDDV---VSTGSDIIIVGRGLFAKGRDAKVEGERYR 252
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 27.2 bits (60), Expect = 2.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
A+GG+ A M++ G D
Sbjct: 180 ASGGIRDLETAISMIEAGAD 199
>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 212
Score = 27.2 bits (59), Expect = 2.3
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 245 GCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
D + VG ++ + +P A I+ ++
Sbjct: 185 FADAIIVGRSIYLADNPAAAAAGIIESI 212
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 26.9 bits (59), Expect = 2.7
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
AAGG+ A M++ G
Sbjct: 180 AAGGIRDRETALRMLKAGAS 199
>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma
cruzi [TaxId: 5693]}
Length = 412
Score = 27.1 bits (58), Expect = 2.7
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 138 FRIPFVCGCRNLGEALRRIRE 158
R+ EA+ RI+
Sbjct: 385 TRLTTTRPVEVYREAVERIKA 405
>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella
flexneri [TaxId: 623]}
Length = 247
Score = 26.8 bits (59), Expect = 3.1
Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 50/173 (28%)
Query: 42 VVTPEQARVAEEAGA-----CAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPV- 95
+ E A A++ GA CA GG+ ++K ++Q VTIPV
Sbjct: 7 CYSMECALTAQQNGADRVELCAAPKE----------GGLT--PSLGVLKSVRQRVTIPVH 54
Query: 96 -MAKARIGHFV-----------EAQILEAIGIDYVDESEVLTPADEENHIN--------K 135
+ + R G F + + + +G + V D + +++
Sbjct: 55 PIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGL----VTGVLDVDGNVDMPRMEKIMA 110
Query: 136 HNFRIPFVCG-----CRNLGEALRRIRE-GAAMIRTKGEAGTGNIIEAVRHVR 182
+ C N L + E G A + T G + ++ + +
Sbjct: 111 AAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSG--QKSDALQGLSKIM 161
>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga
maritima [TaxId: 2336]}
Length = 389
Score = 27.1 bits (58), Expect = 3.3
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 124 LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREG 159
LTP + I RI V L A+ + EG
Sbjct: 353 LTPGLGKKEI-----RIACVLEKDLLSRAIDVLMEG 383
>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate
isomerase, PRAI {Escherichia coli [TaxId: 562]}
Length = 198
Score = 26.4 bits (57), Expect = 3.3
Identities = 22/187 (11%), Positives = 42/187 (22%), Gaps = 18/187 (9%)
Query: 106 EAQILEAIGIDYV-----DESE--VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIRE 158
+A+ G Y S V +E + +
Sbjct: 13 DAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVL 72
Query: 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYD------- 211
A ++ G I + + + + L + F D
Sbjct: 73 SLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSG 132
Query: 212 LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG---DPVKRAQAI 268
L + + G + Q GC G+ S V D ++
Sbjct: 133 QRFDWSLLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDARL-LASV 191
Query: 269 VRAVTHY 275
+ + Y
Sbjct: 192 FQTLRAY 198
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 26.8 bits (58), Expect = 3.7
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252
++ Q +L V F GGV D + LG GV +G
Sbjct: 295 MPILEQRNLKDKLEV--FVDGGVRRGTDVLKALCLGAKGVGLG 335
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 26.5 bits (58), Expect = 3.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 228 AAGGVATPADAAMMMQLGCD 247
A+GG+ T DA M+ G D
Sbjct: 213 ASGGIRTFEDAVKMIMYGAD 232
>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY
{Escherichia coli [TaxId: 562]}
Length = 361
Score = 26.7 bits (57), Expect = 4.0
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 135 KHNFRIPFVCGCRNLGEALRRIREGAAMIR 164
+ R+ C L + + + +R
Sbjct: 332 RGFVRLNAGCPRSKLEKGVAGLINAIRAVR 361
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 253
Score = 26.3 bits (57), Expect = 4.1
Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 18/227 (7%)
Query: 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFV 105
E + E G ++ L+ + + R + +L++++ + + IP I F
Sbjct: 34 ELGKFYSEIGIDELVFLDITASVEK------RKTMLELVEKVAEQIDIPFTVGGGIHDFE 87
Query: 106 EAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRT 165
A L G D V + A EN F + +R+ +
Sbjct: 88 TASELILRGADKV----SINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTY 143
Query: 166 KGEAGTGNIIEAVRHVRSVMGDIRVLRN-MDDDEVFTFAKKIAAPYDLVMQTKQLGRLPV 224
G+ TG ++ G +L +D D + YD M +
Sbjct: 144 SGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKS-------GYDTEMIRFVRPLTTL 196
Query: 225 VHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271
A+GG G D S V+ + ++
Sbjct: 197 PIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKK 243
>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus
thermophilus [TaxId: 274]}
Length = 368
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 99 ARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIRE 158
A + + +++E + + S ++ FR F L AL R+
Sbjct: 312 AELPGWDAFRLVEEARVALIPASAFYLEDPPKDL-----FRFAFCKTEEELHLALERLGR 366
>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I
{Human (Homo sapiens) [TaxId: 9606]}
Length = 418
Score = 26.3 bits (56), Expect = 5.0
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 127 ADEENHINKHNFRIPFVCGCRNLGEALRRIRE 158
+ H R FV L ++R+
Sbjct: 383 SVPHQKHFDHYIRFCFVKDEATLQAMDEKLRK 414
>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga
maritima [TaxId: 2336]}
Length = 375
Score = 26.1 bits (56), Expect = 5.3
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 138 FRIPFVCGCRNLGEALRRIRE 158
R+ F L EAL RI +
Sbjct: 351 VRLSFATSIERLTEALDRIED 371
>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate
dehydrogenase (IMPDH) {Chinese hamster (Cricetulus
griseus) [TaxId: 10029]}
Length = 378
Score = 26.2 bits (57), Expect = 5.3
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 42 VVTPEQARVAEEAGACAVMA---LERV-PADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97
VVT QA+ +AG A+ + G + + + E + +PV+A
Sbjct: 168 VVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIA 227
Query: 98 KARIGHFVEAQILEAIGIDYVDESEVLTPADEEN 131
I + A+G V +L E
Sbjct: 228 DGGIQNVGHIAKALALGASTVMMGSLLAATTEAP 261
>d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 551
Score = 26.1 bits (57), Expect = 6.1
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 147 RNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV----RSVMGDIRVLRNMDDDEVFTF 202
L + I KG +G + EA+ +S++ D+ V +
Sbjct: 143 AFLEPFAKEISTAKNAPYEKGSSGMNSYTEALLGFIANEKSLVDDLYSQYTESKPHVLS- 201
Query: 203 AKKIAAPYDLVMQTKQLGR 221
+I +P L+ +L
Sbjct: 202 --QILSP--LISAYAKLFG 216
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 349
Score = 26.0 bits (56), Expect = 7.1
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252
G++ V GGV T D + LG +F+G
Sbjct: 271 GKIEVYM--DGGVRTGTDVLKALALGARCIFLG 301
>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 252
Score = 25.8 bits (56), Expect = 7.4
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
+L+ + R+PV A+GG G D V S
Sbjct: 186 VELIRRVADSVRIPV--IASGGAGRVEHFYEAAAAGADAVLAAS 227
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 25.7 bits (55), Expect = 7.6
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Query: 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHF 104
E A + + + D + +K +KQ PV+ R
Sbjct: 244 VEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDP 303
Query: 105 VEA-QILEAIGIDYV 118
+ +I+ D +
Sbjct: 304 EKMIEIVTKGYADII 318
>d2bmfa1 c.37.1.14 (A:483-618) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 136
Score = 24.7 bits (54), Expect = 9.6
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 31 AQML------RGGVIMDVVTPEQARVAEEAG 55
A+ML G+I + PE+ +V G
Sbjct: 9 AKMLLDNINTPEGIIPSMFEPEREKVDAIDG 39
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 25.3 bits (54), Expect = 9.7
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 44 TPEQARVAEEAGA--CAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI 101
T E A+ E AGA V R + + +++K V++P++ RI
Sbjct: 230 TVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRI 289
Query: 102 GHFVEA-QILEAIGIDYV 118
A IL D V
Sbjct: 290 NDPQVADDILSRGDADMV 307
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.384
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,168,286
Number of extensions: 57132
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 84
Length of query: 310
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,240,546
Effective search space: 279122850
Effective search space used: 279122850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)