BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021610
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 19/233 (8%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N LQ+G ++L++L+K YG V L G + +VV+ + KE L G EF R
Sbjct: 24 NILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRG-- 81
Query: 105 VVFDIF--TGKGQDMVFTVYGEHWRKMRR--IMTV-PFFTNKVVQQQRFNWEDEAARVVE 159
+F + +G +VF+ G+ W+++RR +MT+ F K + R ++EA +VE
Sbjct: 82 -IFPLAERANRGFGIVFS-NGKKWKEIRRFSLMTLRNFGMGKRSIEDRV--QEEARCLVE 137
Query: 160 DVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQS 219
+++K + + + L N + I+F +RF+ +D N ++ LN L+
Sbjct: 138 ELRKTKASPCDPTFI---LGCAPCNVICSIIFHKRFDYKDQQFLNLMEKLNENIKILSSP 194
Query: 220 FEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSN 272
+ +F PI+ F + K+ K V K Y +E+ K+ + M+N
Sbjct: 195 WIQICNNFSPIIDYFPGTHNKLLKNV-----AFMKSYILEKVKEHQESMDMNN 242
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 19/233 (8%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N LQ+G ++L++L+K YG V L G + +VV+ + KE L G EF R
Sbjct: 22 NILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRG-- 79
Query: 105 VVFDIF--TGKGQDMVFTVYGEHWRKMRR--IMTV-PFFTNKVVQQQRFNWEDEAARVVE 159
+F + +G +VF+ G+ W+++RR +MT+ F K + R ++EA +VE
Sbjct: 80 -IFPLAERANRGFGIVFS-NGKKWKEIRRFSLMTLRNFGMGKRSIEDRV--QEEARCLVE 135
Query: 160 DVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQS 219
+++K + + + L N + I+F +RF+ +D N ++ LN L+
Sbjct: 136 ELRKTKASPCDPTFI---LGCAPCNVICSIIFHKRFDYKDQQFLNLMEKLNENIEILSSP 192
Query: 220 FEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSN 272
+ Y +F +L F + K+ K V K Y +E+ K+ + M+N
Sbjct: 193 WIQVYNNFPALLDYFPGTHNKLLKNV-----AFMKSYILEKVKEHQESMDMNN 240
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 10/167 (5%)
Query: 55 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKG 114
H + + LA++YGDV +R+G +VV++ + L QG F R F + +G G
Sbjct: 31 HLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFRVVSG-G 89
Query: 115 QDMVFTVYGEHWRKMRRI---MTVPFFTNKVVQQQRFNWE--DEAARVVEDVKKDPEAAT 169
+ M F Y EHW+ RR M FFT + +Q EA +V + + +A
Sbjct: 90 RSMAFGHYSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRG--SAD 147
Query: 170 NGIVLRRRLQLMMYNN-MYRIMFDRRFESQDDPLFNRLKALNGERSR 215
+ R L ++ N M + F R+ S DDP F L + N E R
Sbjct: 148 GAFLDPRPLTVVAVANVMSAVCFGCRY-SHDDPEFRELLSHNEEFGR 193
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N LQ+ R+ L +KYGDV + +G R +VV+ D +E L Q F R +
Sbjct: 23 NLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKI 82
Query: 105 VVFD-IFTGKGQDMVFTVYGEHWRKMRRIMTVP---FFTNKVVQQQRFNWEDEAARVVED 160
V D IF G G V GE WR +RR F K ++R ++EA +VE+
Sbjct: 83 AVVDPIFQGYG---VIFANGERWRALRRFSLATMRDFGMGKRSVEERI--QEEARCLVEE 137
Query: 161 VKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRL 206
++K A + +L + N + I+F +RF+ + DP+F RL
Sbjct: 138 LRKSKGALLDNTLL---FHSITSNIICSIVFGKRFDYK-DPVFLRL 179
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N LQ+ R+ L +KYGDV + +G R +VV+ D +E L Q F R +
Sbjct: 23 NLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKI 82
Query: 105 VVFD-IFTGKGQDMVFTVYGEHWRKMRRIMTVP---FFTNKVVQQQRFNWEDEAARVVED 160
V D IF G G V GE WR +RR F K ++R ++EA +VE+
Sbjct: 83 AVVDPIFQGYG---VIFANGERWRALRRFSLATMRDFGMGKRSVEERI--QEEARCLVEE 137
Query: 161 VKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRL 206
++K A + +L + N + I+F +RF+ + DP+F RL
Sbjct: 138 LRKSKGALLDNTLL---FHSITSNIICSIVFGKRFDYK-DPVFLRL 179
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N LQ+ R+ L +KYGDV + +G R +VV+ D +E L Q F R +
Sbjct: 23 NLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKI 82
Query: 105 VVFD-IFTGKGQDMVFTVYGEHWRKMRRIMTVP---FFTNKVVQQQRFNWEDEAARVVED 160
V D IF G G V GE WR +RR F K ++R ++EA +VE+
Sbjct: 83 AVVDPIFQGYG---VIFANGERWRALRRFSLATMRDFGMGKRSVEERI--QEEARCLVEE 137
Query: 161 VKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRL 206
++K A + +L + N + I+F +RF+ + DP+F RL
Sbjct: 138 LRKSKGALLDNTLL---FHSITSNIICSIVFGKRFDYK-DPVFLRL 179
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N LQ+ R+ L +KYGDV + +G R +VV+ D +E L Q F R +
Sbjct: 23 NLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKI 82
Query: 105 VVFD-IFTGKGQDMVFTVYGEHWRKMRRIMTVP---FFTNKVVQQQRFNWEDEAARVVED 160
V D IF G G V GE WR +RR F K ++R ++EA +VE+
Sbjct: 83 AVVDPIFQGYG---VIFANGERWRALRRFSLATMRDFGMGKRSVEERI--QEEARCLVEE 137
Query: 161 VKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRL 206
++K A + +L + N + I+F +RF+ + DP+F RL
Sbjct: 138 LRKSKGALLDNTLL---FHSITSNIICSIVFGKRFDYK-DPVFLRL 179
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N LQ+ R+ L +KYGDV + +G R +VV+ D +E L Q F R +
Sbjct: 23 NLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKI 82
Query: 105 VVFD-IFTGKGQDMVFTVYGEHWRKMRRIMTVP---FFTNKVVQQQRFNWEDEAARVVED 160
V D IF G G V GE WR +RR F K ++R ++EA +VE+
Sbjct: 83 AVVDPIFQGYG---VIFANGERWRALRRFSLATMRDFGMGKRSVEERI--QEEARCLVEE 137
Query: 161 VKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRL 206
++K A + +L + N + I+F +RF+ + DP+F RL
Sbjct: 138 LRKSKGALLDNTLL---FHSITSNIICSIVFGKRFDYK-DPVFLRL 179
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%)
Query: 55 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKG 114
H N L KKYG + +RMG + V+V AKEVL +G +F R + DI +
Sbjct: 32 HNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNR 91
Query: 115 QDMVFTVYGEHWRKMRRIMTVPF 137
+ + F G HW+ RR+ F
Sbjct: 92 KGIAFADSGAHWQLHRRLAMATF 114
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 113/259 (43%), Gaps = 19/259 (7%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N+LQ+ + + +L ++++YG V + +G R +VV+ D KE L Q EF R
Sbjct: 23 NYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVKEALVDQAEEFSGRGEQ 82
Query: 105 VVFD-IFTGKGQDMVFTVYGEHWRKMRRIMTVP---FFTNKVVQQQRFNWEDEAARVVED 160
FD +F G G V GE +++RR F K ++R ++EA +++
Sbjct: 83 ATFDWLFKGYG---VAFSNGERAKQLRRFSIATLRGFGVGKRGIEERI--QEEAGFLIDA 137
Query: 161 VKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSF 220
++ A + R + N + I+F RF+ +D + L+ + G A S
Sbjct: 138 LRGTHGANIDPTFFLSR---TVSNVISSIVFGDRFDYEDKEFLSLLRMMLGSFQFTATST 194
Query: 221 EYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAID 280
Y F +++ +L ++ + LQ +D+ +K + +++ S + ID
Sbjct: 195 GQLYEMFSSVMK-----HLPGPQQQAFKELQGLEDFIA--KKVEHNQRTLDPNSPRDFID 247
Query: 281 HILDAQTKGEINEDNVLYI 299
L + E N + Y+
Sbjct: 248 SFLIRMQEEEKNPNTEFYL 266
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 116/283 (40%), Gaps = 29/283 (10%)
Query: 45 NWLQVGDDLN-----HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFG 99
W +G L H LS ++++YGDVL +R+G +VV+S D ++ L QG +F
Sbjct: 18 GWPLIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQGDDFK 77
Query: 100 SRTRNVVFDIFTGKGQDMVFTV-YGEHWRKMRR----------IMTVPFFTNKVVQQQRF 148
R F + + GQ M F+ G W RR I + P + ++
Sbjct: 78 GRPDLYTFTLIS-NGQSMSFSPDSGPVWAARRRLAQNGLKSFSIASDPASSTSCYLEEHV 136
Query: 149 NWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFE--SQDDPLFNRL 206
+ E A V+ ++ A R + + + N + I F RR++ Q+ L
Sbjct: 137 SKE---AEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRRYDHNHQELLSLVNL 193
Query: 207 KALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKL-- 264
GE N DFIPILR L K++ E+ + E K
Sbjct: 194 NNNFGEVVGSG-----NPADFIPILRYLPNPSLNAFKDLNEKFYSFMQKMVKEHYKTFEK 248
Query: 265 ASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAG 307
+ +++ ++ + LD +++++ ++ IV ++ AG
Sbjct: 249 GHIRDITDSLIEHCQEKQLDENANVQLSDEKIINIVLDLFGAG 291
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 116/259 (44%), Gaps = 19/259 (7%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N+LQ+ + + +L ++++YG V + +G R +VV+ D +E L Q EF R
Sbjct: 23 NYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQ 82
Query: 105 VVFD-IFTGKGQDMVFTVYGEHWRKMRRIMTVP---FFTNKVVQQQRFNWEDEAARVVED 160
FD +F G G +VF+ GE +++RR F K ++R ++EA +++
Sbjct: 83 ATFDWVFKGYG--VVFS-NGERAKQLRRFSIATLRDFGVGKRGIEERI--QEEAGFLIDA 137
Query: 161 VKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSF 220
++ A + R + N + I+F RF+ +D + L+ + G + S
Sbjct: 138 LRGTGGANIDPTFFLSR---TVSNVISSIVFGDRFDYKDKEFLSLLRMMLGSFQFTSTST 194
Query: 221 EYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAID 280
Y F +++ +L ++ + LQ +D+ +K + +++ S + ID
Sbjct: 195 GQLYEMFSSVMK-----HLPGPQQQAFQLLQGLEDFIA--KKVEHNQRTLDPNSPRDFID 247
Query: 281 HILDAQTKGEINEDNVLYI 299
L + E N + Y+
Sbjct: 248 SFLIRMQEEEKNPNTEFYL 266
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N+LQ+ + + +L ++++YG V + +G R +VV+ D +E L Q EF R
Sbjct: 23 NYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQ 82
Query: 105 VVFD-IFTGKGQDMVFTVYGEHWRKMRRIMTVP---FFTNKVVQQQRFNWEDEAARVVED 160
FD +F G G +VF+ GE +++RR F K ++R ++EA +++
Sbjct: 83 ATFDWVFKGYG--VVFS-NGERAKQLRRFSIATLRDFGVGKRGIEERI--QEEAGFLIDA 137
Query: 161 VKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNG 211
++ A + R + N + I+F RF+ +D + L+ + G
Sbjct: 138 LRGTGGANIDPTFFLSR---TVSNVISSIVFGDRFDYKDKEFLSLLRMMLG 185
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N+LQ+ + + +L ++++YG V + +G R +VV+ D +E L Q EF R
Sbjct: 23 NYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQ 82
Query: 105 VVFD-IFTGKGQDMVFTVYGEHWRKMRRIMTVP---FFTNKVVQQQRFNWEDEAARVVED 160
FD +F G G +VF+ GE +++RR F K ++R ++EA +++
Sbjct: 83 ATFDWVFKGYG--VVFS-NGERAKQLRRFSIATLRDFGVGKRGIEERI--QEEAGFLIDA 137
Query: 161 VKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNG 211
++ A + R + N + I+F RF+ +D + L+ + G
Sbjct: 138 LRGTGGANIDPTFFLSR---TVSNVISSIVFGDRFDYKDKEFLSLLRMMLG 185
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N+LQ+ + + +L ++++YG V + +G R +VV+ D +E L Q EF R
Sbjct: 23 NYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQ 82
Query: 105 VVFD-IFTGKGQDMVFTVYGEHWRKMRRIMTVP---FFTNKVVQQQRFNWEDEAARVVED 160
FD +F G G +VF+ GE +++RR F K ++R ++EA +++
Sbjct: 83 ATFDWVFKGYG--VVFS-NGERAKQLRRFSIATLRDFGVGKRGIEERI--QEEAGFLIDA 137
Query: 161 VKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNG 211
++ A + R + N + I+F RF+ +D + L+ + G
Sbjct: 138 LRGTGGANIDPTFFLSR---TVSNVISSIVFGDRFDYKDKEFLSLLRMMLG 185
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 12/171 (7%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N+LQ+ + + +L ++++YG V + +G R +VV+ D +E L Q EF R
Sbjct: 23 NYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQ 82
Query: 105 VVFD-IFTGKGQDMVFTVYGEHWRKMRRIMTVP---FFTNKVVQQQRFNWEDEAARVVED 160
FD +F G G +VF+ GE +++RR F K ++R ++EA +++
Sbjct: 83 ATFDWVFKGYG--VVFS-NGERAKQLRRFSIATLRDFGVGKRGIEERI--QEEAGFLIDA 137
Query: 161 VKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNG 211
++ A + R + N + I+F RF+ +D + L+ + G
Sbjct: 138 LRGTGGANIDPTFFLSR---TVSNVISSIVFGDRFDYKDKEFLSLLRMMLG 185
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 10/169 (5%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N LQ+ ++L++L+K YG V L G +VV+ + KE L G EF R
Sbjct: 24 NILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKEALIDLGEEFSGRGHF 83
Query: 105 VVFDIFTGKGQDMVFTVYGEHWRKMRR--IMTV-PFFTNKVVQQQRFNWEDEAARVVEDV 161
+ + +G +VF+ G+ W+++RR +MT+ F K + R ++EA +VE++
Sbjct: 84 PLAER-ANRGFGIVFS-NGKRWKEIRRFSLMTLRNFGMGKRSIEDRV--QEEARCLVEEL 139
Query: 162 KKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 210
+K + + + L N + I+F +RF+ +D N ++ LN
Sbjct: 140 RKTKASPCDPTFI---LGCAPCNVICSIIFQKRFDYKDQQFLNLMEKLN 185
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 10/188 (5%)
Query: 63 KKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVY 122
+KYGDV + +G R +V++ + +E L + F R + + D F +G ++F
Sbjct: 41 EKYGDVFTVHLGPRPVVMLCGVEAIREALVDKAEAFSGRGKIAMVDPFF-RGYGVIF-AN 98
Query: 123 GEHWRKMRRIMTVP---FFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ 179
G W+ +RR F K ++R ++EA ++E+++K A + L Q
Sbjct: 99 GNRWKVLRRFSVTTMRDFGMGKRSVEERI--QEEAQCLIEELRKSKGALMDPTFL---FQ 153
Query: 180 LMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYL 239
+ N + I+F +RF QD L S ++ F + F L+ F +
Sbjct: 154 SITANIICSIVFGKRFHYQDQEFLKMLNLFYQTFSLISSVFGQLFELFSGFLKHFPGAHR 213
Query: 240 KICKEVKE 247
++ K ++E
Sbjct: 214 QVYKNLQE 221
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 92/199 (46%), Gaps = 11/199 (5%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N LQ+ ++L+ ++ YG V + +G + VV+ + KE L G EF R
Sbjct: 23 NILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGYEAVKEALVDLGEEFAGRGSV 82
Query: 105 VVFDIFTGKGQDMVFTVYGEHWRKMRR--IMTV-PFFTNKVVQQQRFNWEDEAARVVEDV 161
+ + + KG + F+ + W++MRR +MT+ F K + R ++EA +VE++
Sbjct: 83 PILEKVS-KGLGIAFS-NAKTWKEMRRFSLMTLRNFGMGKRSIEDRI--QEEARCLVEEL 138
Query: 162 KKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFE 221
+K + + + L N + ++F RF+ +D+ +++L+ L +
Sbjct: 139 RKTNASPCDPTFI---LGCAPCNVICSVIFHNRFDYKDEEFLKLMESLHENVELLGTPWL 195
Query: 222 YNYGDFIPILRPFLRGYLK 240
Y +F P L + G K
Sbjct: 196 QVYNNF-PALLDYFPGIHK 213
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 121/272 (44%), Gaps = 23/272 (8%)
Query: 45 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104
N LQ+ ++ ++ +K YG V + G +VV + KE L G EF R +
Sbjct: 23 NMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGYEAVKEALIDNGEEFSGRGNS 82
Query: 105 VVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVP---FFTNKVVQQQRFNWEDEAARVVEDV 161
+ T KG ++ + G+ W+++RR F K + R ++EA +VE++
Sbjct: 83 PISQRIT-KGLGII-SSNGKRWKEIRRFSLTTLRNFGMGKRSIEDRV--QEEAHCLVEEL 138
Query: 162 KKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFE 221
+K + + + L N + ++F +RF+ +D +K N E R+ S
Sbjct: 139 RKTKASPCDPTFI---LGCAPCNVICSVVFQKRFDYKDQNFLTLMKRFN-ENFRILNSPW 194
Query: 222 YNYGDFIPILRPFLRG-YLKICKEVKERRLQLFKDYFVEERKKLASTKSMSN--ESLKC- 277
+ P+L G + K+ K V L + Y E+ K+ ++ ++N + + C
Sbjct: 195 IQVCNNFPLLIDCFPGTHNKVLKNV-----ALTRSYIREKVKEHQASLDVNNPRDFIDCF 249
Query: 278 --AIDHILDAQTKGEINEDNVLYIVENINVAG 307
++ D Q K E N +N++ V ++ VAG
Sbjct: 250 LIKMEQEKDNQ-KSEFNIENLVGTVADLFVAG 280
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 91/233 (39%), Gaps = 43/233 (18%)
Query: 26 LRGKRXXXXXXXXXXXXXXNWLQVGDDLN-----HRNLSDLAKKYGDVLLLRMGQRNLVV 80
L+G R W +G L H LS ++++YGDVL +R+G ++V
Sbjct: 4 LKGLRPRVPKGLKSPPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLV 63
Query: 81 VSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGK----GQDMVFTV-YGEHWRKMRRIMTV 135
+S D ++ L QG +F R D++T GQ + F+ G W RR+
Sbjct: 64 LSRLDTIRQALVRQGDDFKGRP-----DLYTSTLITDGQSLTFSTDSGPVWAARRRLAQN 118
Query: 136 PFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMM--------YNNMY 187
T + + + E V K+ +A L RLQ +M YN +
Sbjct: 119 ALNTFSIASDPA---SSSSCYLEEHVSKEAKA------LISRLQELMAGPGHFDPYNQVV 169
Query: 188 --------RIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR 232
+ F + F D + + +K + E A S N DF PILR
Sbjct: 170 VSVANVIGAMCFGQHFPESSDEMLSLVKNTH-EFVETASS--GNPLDFFPILR 219
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 51 DDLNHRNLSDL----AKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVV 106
D++ R L D+ AKKYG V+ + + + V+V+SP+ K+ L + S+ +
Sbjct: 5 DEVGGRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMSTKYNKDSKMYRAL 64
Query: 107 FDIFTGK--GQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQ-QQRFNWEDEAARVVEDVKK 163
+F + GQ +V E W K RR++ + F + +V + FN + E + + K
Sbjct: 65 QTVFGERLFGQGLVSECNYERWHKQRRVIDLAFSRSSLVSLMETFNEKAEQLVEILEAKA 124
Query: 164 DPEAATN 170
D + +
Sbjct: 125 DGQTPVS 131
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 102/257 (39%), Gaps = 19/257 (7%)
Query: 61 LAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI--FTGKGQDMV 118
L +++GDV L++ +VV++ +E L T G + R + I F + Q +
Sbjct: 39 LRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVF 98
Query: 119 FTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEA---ATNGIVLR 175
YG WR+ RR + ++ W E A + + NG+
Sbjct: 99 LARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGL--- 155
Query: 176 RRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR--P 233
L + N + + RRFE DDP F RL L E + F + +P+L P
Sbjct: 156 --LDKAVSNVIASLTCGRRFE-YDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHIP 212
Query: 234 FLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKGE--I 291
L G K+ + K QL D + E + + + + + A+ E
Sbjct: 213 ALAG--KVLRFQKAFLTQL--DELLTEHRMTWDPAQPPRDLTEAFLAEMEKAKGNPESSF 268
Query: 292 NEDNVLYIVENINVAGM 308
N++N+ +V ++ AGM
Sbjct: 269 NDENLRIVVADLFSAGM 285
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 102/257 (39%), Gaps = 19/257 (7%)
Query: 61 LAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI--FTGKGQDMV 118
L +++GDV L++ +VV++ +E L T G + R + I F + Q +
Sbjct: 39 LRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVF 98
Query: 119 FTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEA---ATNGIVLR 175
YG WR+ RR + ++ W E A + + NG+
Sbjct: 99 LARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGL--- 155
Query: 176 RRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR--P 233
L + N + + RRFE DDP F RL L E + F + +P+ R P
Sbjct: 156 --LDKAVSNVIASLTCGRRFE-YDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVDRHIP 212
Query: 234 FLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKGE--I 291
L G K+ + K QL D + E + + + + + A+ E
Sbjct: 213 ALAG--KVLRFQKAFLTQL--DELLTEHRMTWDPAQPPRDLTEAFLAEMEKAKGNPESSF 268
Query: 292 NEDNVLYIVENINVAGM 308
N++N+ +V ++ AGM
Sbjct: 269 NDENLRIVVADLFSAGM 285
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%)
Query: 57 NLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQD 116
+L L +K G V LR+G + +VV++S +E + + V+F R + + + + + QD
Sbjct: 48 HLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSYKLVSQRCQD 107
Query: 117 MVFTVYGEHWRKMRRI 132
+ Y W+ +++
Sbjct: 108 ISLGDYSLLWKAHKKL 123
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 15/252 (5%)
Query: 56 RNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ 115
++ + LA+++G V L +G + +VV+ KE L EF R F +G
Sbjct: 34 KSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAFHAHRDRG- 92
Query: 116 DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ-QRFNWEDEAARVVEDVKKDPEAATNGIVL 174
++F G W+ +RR + +Q + EA ++E ++K + L
Sbjct: 93 -IIFN-NGPTWKDIRRFSLTTLRNYGMGKQGNESRIQREAHFLLEALRKTQGQPFDPTFL 150
Query: 175 RRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPF 234
+ N + I+F + F+ D+ + N L+ + Y +F L
Sbjct: 151 ---IGCAPCNVIADILFRKHFDYNDEKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYL 207
Query: 235 LRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKGEINED 294
+ K+ K V E K+Y V ER K +S+ + D +L + + E +
Sbjct: 208 PGSHRKVIKNVAE-----VKEY-VSERVK-EHHQSLDPNCPRDLTDCLL-VEMEKEKHSA 259
Query: 295 NVLYIVENINVA 306
LY ++ I V
Sbjct: 260 ERLYTMDGITVT 271
>pdb|1ZT2|A Chain A, Heterodimeric Structure Of The Core Primase.
pdb|1ZT2|C Chain C, Heterodimeric Structure Of The Core Primase
Length = 330
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 114 GQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIV 173
G D++F + +H K+R I P N VV ++ E + +E V+ E G+
Sbjct: 95 GSDLLFDIDADHLCKLRSIRFCPVCGNAVVSEK---CERDNVETLEYVEMTSECIKRGLE 151
Query: 174 LRRRLQLMMYNNM---YRIMF--DRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFI 228
R L ++ ++ ++ F +R F Q D N + ER +A EY G +
Sbjct: 152 QTRNLVEILEDDFGLKPKVYFSGNRGFHVQVDCYGNCALLDSDERKEIA---EYVMGIGV 208
Query: 229 P 229
P
Sbjct: 209 P 209
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 19/88 (21%)
Query: 63 KKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFT--------GKG 114
KKYG V GQ+ ++ ++ PD K VL + + +FT G
Sbjct: 46 KKYGKVWGFYDGQQPVLAITDPDMIKTVLVKE-----------CYSVFTNRRPFGPVGFM 94
Query: 115 QDMVFTVYGEHWRKMRRIMTVPFFTNKV 142
+ + E W+++R +++ F + K+
Sbjct: 95 KSAISIAEDEEWKRLRSLLSPTFTSGKL 122
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 19/88 (21%)
Query: 63 KKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFT--------GKG 114
KKYG V GQ+ ++ ++ PD K VL + + +FT G
Sbjct: 44 KKYGKVWGFYDGQQPVLAITDPDMIKTVLVKE-----------CYSVFTNRRPFGPVGFM 92
Query: 115 QDMVFTVYGEHWRKMRRIMTVPFFTNKV 142
+ + E W+++R +++ F + K+
Sbjct: 93 KSAISIAEDEEWKRLRSLLSPTFTSGKL 120
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 19/88 (21%)
Query: 63 KKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFT--------GKG 114
KKYG V GQ+ ++ ++ PD K VL + + +FT G
Sbjct: 45 KKYGKVWGFYDGQQPVLAITDPDMIKTVLVKE-----------CYSVFTNRRPFGPVGFM 93
Query: 115 QDMVFTVYGEHWRKMRRIMTVPFFTNKV 142
+ + E W+++R +++ F + K+
Sbjct: 94 KSAISIAEDEEWKRLRSLLSPTFTSGKL 121
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 29/134 (21%)
Query: 92 HTQGVEFGSRTRNVV-----FDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQ 146
HT GVEFGS+ NV I+ GQ+ +V ++R + V T++
Sbjct: 42 HTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNA 101
Query: 147 RFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDR--------RFESQ 198
NW +A + A+ IV +++ N + DR RF +
Sbjct: 102 LTNWLTDARML----------ASQNIV------IILCGNKKDLDADREVTFLEASRFAQE 145
Query: 199 DDPLFNRLKALNGE 212
++ +F AL GE
Sbjct: 146 NELMFLETSALTGE 159
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 29/134 (21%)
Query: 92 HTQGVEFGSRTRNVV-----FDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQ 146
HT GVEFGS+ NV I+ GQ+ +V ++R + V T++
Sbjct: 41 HTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNA 100
Query: 147 RFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDR--------RFESQ 198
NW +A + A+ IV +++ N + DR RF +
Sbjct: 101 LTNWLTDARML----------ASQNIV------IILCGNKKDLDADREVTFLEASRFAQE 144
Query: 199 DDPLFNRLKALNGE 212
++ +F AL GE
Sbjct: 145 NELMFLETSALTGE 158
>pdb|4E1S|A Chain A, X-Ray Crystal Structure Of The Transmembrane Beta-Domain
From Intimin From Ehec Strain O157:h7
Length = 242
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 19/104 (18%)
Query: 132 IMTVPFFTNKVVQQQRFNWEDEAARVVED-VKKDPEAATNGIVLRRRLQLMM-------- 182
+ + P K++ +Q + D A D ++ +P AAT G+ + M
Sbjct: 131 LPSYPALGAKLIYEQYYG--DNVALFNSDKLQSNPGAATVGVNYTPIPLVTMGIDYRHGT 188
Query: 183 -------YNNMYRIMFDRRFESQDDPLF-NRLKALNGERSRLAQ 218
Y+ +R FD+ + Q +P + N L+ L+G R L Q
Sbjct: 189 GNENDLLYSMQFRYQFDKSWSQQIEPQYVNELRTLSGSRYDLVQ 232
>pdb|3AE0|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Geranylgeranyl Thiopyrophosphate
pdb|3AE0|B Chain B, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Geranylgeranyl Thiopyrophosphate
Length = 293
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 229 PILRPFLRGYLKICKEVKERRLQLFKDYFVEERKK 263
PI+ R Y++I EV++ L + FVE+RKK
Sbjct: 245 PIIELAARIYIEILDEVRQANYTLHERVFVEKRKK 279
>pdb|3ADZ|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Intermediate Pspp
pdb|3LGZ|B Chain B, Crystal Structure Of Dehydrosqualene Synthase Y129a From
S. Aureus Complexed With Presqualene Pyrophosphate
Length = 293
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 229 PILRPFLRGYLKICKEVKERRLQLFKDYFVEERKK 263
PI+ R Y++I EV++ L + FVE+RKK
Sbjct: 245 PIIELAARIYIEILDEVRQANYTLHERVFVEKRKK 279
>pdb|2ZCO|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus
pdb|2ZCP|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Farnesyl Thiopyrophosphate
pdb|2ZCP|B Chain B, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Farnesyl Thiopyrophosphate
pdb|2ZCQ|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bisphosphonate Bph-652
pdb|2ZCR|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bisphosphonate Bph-698
pdb|2ZCS|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bisphosphonate Bph-700
pdb|2ZY1|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bisphosphonate Bph-830
pdb|3ACW|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bph-651
pdb|3ACX|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bph-673
pdb|3ACY|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Bph-702
pdb|3NPR|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From S. Aureus Complexed With Presqualene
Diphosphate (Pspp)
pdb|3NRI|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From S. Aureus Complexed With Dehydrosqualene
(Dhs)
pdb|3TFN|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Bph-1183
pdb|3TFP|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Bph-1162
pdb|3TFV|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Bph-1154
Length = 293
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 229 PILRPFLRGYLKICKEVKERRLQLFKDYFVEERKK 263
PI+ R Y++I EV++ L + FVE+RKK
Sbjct: 245 PIIELAARIYIEILDEVRQANYTLHERVFVEKRKK 279
>pdb|4E9U|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With A Thiocyanate Inhibitor
pdb|4E9Z|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Quinuclidine Bph-651 In The S1
Site
pdb|4EA0|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Diphosphate And Quinuclidine
Bph-651
pdb|4EA0|B Chain B, Crystal Structure Of Dehydrosqualene Synthase (Crtm) From
S. Aureus Complexed With Diphosphate And Quinuclidine
Bph-651
pdb|4EA1|A Chain A, Co-Crystal Structure Of Dehydrosqualene Synthase (Crtm)
From S. Aureus With Sq-109
pdb|4EA2|A Chain A, Crystal Structure Of Dehydrosqualene Synthase (Crtm)
Aureus Complexed With Sq-109
Length = 287
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 229 PILRPFLRGYLKICKEVKERRLQLFKDYFVEERKK 263
PI+ R Y++I EV++ L + FVE+RKK
Sbjct: 239 PIIELAARIYIEILDEVRQANYTLHERVFVEKRKK 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,859,566
Number of Sequences: 62578
Number of extensions: 305618
Number of successful extensions: 1041
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 42
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)