Query 021610
Match_columns 310
No_of_seqs 126 out of 1086
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:19:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 100.0 2.1E-45 4.5E-50 331.0 29.8 271 30-310 24-301 (489)
2 PLN02394 trans-cinnamate 4-mon 100.0 6.5E-36 1.4E-40 275.9 30.3 305 6-310 4-308 (503)
3 PLN02971 tryptophan N-hydroxyl 100.0 2.3E-35 5E-40 273.9 29.7 279 28-310 53-342 (543)
4 PLN02687 flavonoid 3'-monooxyg 100.0 5E-34 1.1E-38 263.8 28.8 290 12-310 11-312 (517)
5 PLN02183 ferulate 5-hydroxylas 100.0 1E-32 2.2E-37 255.1 27.6 284 15-310 19-319 (516)
6 PLN03234 cytochrome P450 83B1; 100.0 1.9E-32 4.1E-37 252.6 28.8 285 17-310 13-303 (499)
7 PLN03112 cytochrome P450 famil 100.0 2.6E-32 5.6E-37 252.5 29.1 285 20-310 20-311 (514)
8 PLN00110 flavonoid 3',5'-hydro 100.0 8.4E-32 1.8E-36 247.9 29.6 287 15-310 13-304 (504)
9 PLN00168 Cytochrome P450; Prov 100.0 2E-31 4.4E-36 246.5 30.6 275 29-310 32-321 (519)
10 PLN03018 homomethionine N-hydr 100.0 6.1E-31 1.3E-35 243.0 28.8 278 30-310 38-329 (534)
11 PLN02655 ent-kaurene oxidase 100.0 2.4E-31 5.3E-36 243.0 25.2 270 34-310 1-277 (466)
12 PLN02966 cytochrome P450 83A1 100.0 6.7E-31 1.5E-35 242.3 26.7 282 20-310 17-304 (502)
13 KOG0158 Cytochrome P450 CYP3/C 100.0 6.3E-31 1.4E-35 234.6 23.3 270 28-310 28-309 (499)
14 PTZ00404 cytochrome P450; Prov 100.0 9E-30 2E-34 233.9 25.9 267 29-310 26-298 (482)
15 PLN02290 cytokinin trans-hydro 100.0 1.5E-29 3.3E-34 234.2 24.1 264 33-310 43-331 (516)
16 PLN02500 cytochrome P450 90B1 100.0 1.2E-28 2.6E-33 226.8 25.7 258 26-310 32-294 (490)
17 PLN02169 fatty acid (omega-1)- 100.0 2.9E-28 6.2E-33 224.2 22.8 266 34-310 33-316 (500)
18 PLN02987 Cytochrome P450, fami 100.0 5.1E-28 1.1E-32 220.7 22.8 265 15-310 13-282 (472)
19 KOG0157 Cytochrome P450 CYP4/C 100.0 1.7E-27 3.7E-32 218.2 24.1 266 30-310 33-306 (497)
20 PF00067 p450: Cytochrome P450 100.0 2.8E-28 6E-33 222.0 16.6 269 34-310 1-277 (463)
21 PLN02196 abscisic acid 8'-hydr 100.0 4E-27 8.7E-32 215.0 23.4 246 28-310 31-279 (463)
22 PLN02774 brassinosteroid-6-oxi 100.0 1.8E-27 3.8E-32 217.4 20.9 250 29-310 28-279 (463)
23 PLN02302 ent-kaurenoic acid ox 100.0 5.7E-26 1.2E-30 209.3 27.0 257 27-310 37-302 (490)
24 PLN03141 3-epi-6-deoxocathaste 99.9 1.9E-26 4.2E-31 210.1 21.3 258 28-310 3-266 (452)
25 PLN03195 fatty acid omega-hydr 99.9 5.2E-26 1.1E-30 210.6 21.9 265 34-310 32-307 (516)
26 PLN02936 epsilon-ring hydroxyl 99.9 2.7E-24 5.9E-29 197.7 21.8 262 33-310 13-293 (489)
27 PLN02738 carotene beta-ring hy 99.9 6.1E-23 1.3E-27 192.5 24.0 257 43-310 142-406 (633)
28 KOG0159 Cytochrome P450 CYP11/ 99.9 3.5E-22 7.5E-27 175.6 21.2 264 30-310 48-331 (519)
29 PLN02426 cytochrome P450, fami 99.8 2.6E-18 5.6E-23 158.2 23.1 250 39-310 48-308 (502)
30 PLN02648 allene oxide synthase 99.7 2.8E-17 6E-22 149.8 7.1 162 30-196 15-193 (480)
31 KOG0684 Cytochrome P450 [Secon 99.7 2E-14 4.4E-19 124.4 22.0 248 32-308 31-286 (486)
32 COG2124 CypX Cytochrome P450 [ 99.6 1.8E-14 3.9E-19 129.5 18.8 218 56-310 26-251 (411)
33 KOG0114 Predicted RNA-binding 80.4 9.8 0.00021 26.9 6.1 60 31-93 11-76 (124)
34 PF13893 RRM_5: RNA recognitio 66.8 17 0.00036 22.1 4.4 43 59-101 2-49 (56)
35 PF00076 RRM_1: RNA recognitio 66.1 26 0.00056 21.9 5.5 56 42-100 2-66 (70)
36 PF05393 Hum_adeno_E3A: Human 63.4 17 0.00036 24.7 3.9 8 37-44 64-71 (94)
37 cd01646 RT_Bac_retron_I RT_Bac 56.9 42 0.00091 25.6 6.0 58 29-92 50-107 (158)
38 PLN03120 nucleic acid binding 51.5 72 0.0016 26.9 6.7 59 42-103 8-72 (260)
39 PF13625 Helicase_C_3: Helicas 49.4 46 0.001 24.5 5.0 36 56-93 78-113 (129)
40 PLN03134 glycine-rich RNA-bind 48.2 71 0.0015 24.1 5.9 59 41-102 37-105 (144)
41 TIGR01661 ELAV_HUD_SF ELAV/HuD 48.0 58 0.0013 28.5 6.3 59 41-102 272-340 (352)
42 PRK09458 pspB phage shock prot 40.5 61 0.0013 21.4 3.7 24 5-28 7-30 (75)
43 PF15206 FAM209: FAM209 family 40.3 34 0.00074 25.5 2.8 37 5-41 36-75 (150)
44 PF15205 PLAC9: Placenta-speci 39.7 18 0.00039 23.1 1.2 11 31-41 57-68 (74)
45 PF15330 SIT: SHP2-interacting 37.8 1.1E+02 0.0024 21.9 5.1 11 39-49 45-55 (107)
46 smart00362 RRM_2 RNA recogniti 35.0 1.1E+02 0.0023 18.6 6.1 39 55-93 13-58 (72)
47 PF09926 DUF2158: Uncharacteri 34.4 41 0.00088 20.6 2.1 18 65-82 3-20 (53)
48 KOG3653 Transforming growth fa 34.2 2.1E+02 0.0045 26.6 7.3 39 63-101 221-259 (534)
49 PF01102 Glycophorin_A: Glycop 34.2 58 0.0013 23.9 3.3 14 16-29 81-94 (122)
50 PF05084 GRA6: Granule antigen 33.8 63 0.0014 24.7 3.5 31 6-39 154-184 (215)
51 PRK03554 tatA twin arginine tr 33.8 32 0.0007 23.5 1.7 19 1-19 1-19 (89)
52 PF08780 NTase_sub_bind: Nucle 31.8 1.4E+02 0.0031 21.8 5.1 11 121-131 76-86 (124)
53 PF15102 TMEM154: TMEM154 prot 30.9 31 0.00067 26.1 1.4 7 57-63 129-135 (146)
54 PF08675 RNA_bind: RNA binding 30.8 1.2E+02 0.0025 20.7 4.0 37 57-93 24-61 (87)
55 PRK02958 tatA twin arginine tr 30.3 38 0.00083 22.3 1.6 19 1-19 1-19 (73)
56 KOG0107 Alternative splicing f 29.8 98 0.0021 24.3 4.0 48 41-91 13-64 (195)
57 PRK01833 tatA twin arginine tr 28.7 44 0.00096 22.1 1.7 19 1-19 1-19 (74)
58 PRK03625 tatE twin arginine tr 27.8 38 0.00083 21.9 1.3 11 36-46 21-31 (67)
59 PF05084 GRA6: Granule antigen 27.1 2E+02 0.0044 22.1 5.1 15 10-24 154-168 (215)
60 PF05172 Nup35_RRM: Nup53/35/4 26.6 1.3E+02 0.0028 21.2 3.9 44 57-100 21-80 (100)
61 TIGR01642 U2AF_lg U2 snRNP aux 25.9 1.7E+02 0.0036 27.3 5.8 47 56-102 434-493 (509)
62 PF06667 PspB: Phage shock pro 25.1 1.8E+02 0.0038 19.3 4.1 18 10-27 12-29 (75)
63 KOG0149 Predicted RNA-binding 25.0 2.7E+02 0.0058 23.1 5.8 64 42-108 16-88 (247)
64 TIGR02976 phageshock_pspB phag 24.9 1.6E+02 0.0036 19.5 3.9 11 9-19 11-21 (75)
65 PLN02196 abscisic acid 8'-hydr 24.7 1.4E+02 0.003 27.4 5.0 6 278-283 328-333 (463)
66 PRK02302 hypothetical protein; 24.4 1.9E+02 0.0041 19.9 4.2 31 63-93 24-54 (89)
67 PRK00994 F420-dependent methyl 24.3 4.2E+02 0.0092 22.1 7.9 106 56-164 50-167 (277)
68 cd01648 TERT TERT: Telomerase 24.1 2.1E+02 0.0045 20.6 4.9 57 30-92 17-77 (119)
69 TIGR01649 hnRNP-L_PTB hnRNP-L/ 24.0 3.3E+02 0.0071 25.3 7.2 59 42-102 279-342 (481)
70 TIGR01659 sex-lethal sex-letha 23.6 3.5E+02 0.0075 24.0 6.9 48 55-102 121-178 (346)
71 PHA02902 putative IMV membrane 23.0 1.9E+02 0.0041 18.4 3.6 17 9-25 10-26 (70)
72 PRK04023 DNA polymerase II lar 22.6 1.1E+02 0.0023 31.2 3.7 62 66-129 370-431 (1121)
73 KOG4241 Mitochondrial ribosoma 22.2 74 0.0016 25.6 2.2 30 64-93 135-164 (245)
74 TIGR00354 polC DNA polymerase, 22.1 1.1E+02 0.0023 31.0 3.6 63 66-130 368-430 (1095)
75 PRK02886 hypothetical protein; 22.1 2.3E+02 0.0049 19.4 4.2 31 63-93 22-52 (87)
76 TIGR01628 PABP-1234 polyadenyl 21.6 2.7E+02 0.0058 26.4 6.3 59 41-102 288-355 (562)
77 PRK04561 tatA twin arginine tr 21.2 83 0.0018 20.8 1.9 9 36-44 21-29 (75)
78 cd01651 RT_G2_intron RT_G2_int 21.1 2E+02 0.0044 23.0 4.8 60 30-92 124-191 (226)
79 COG3924 Predicted membrane pro 21.0 2.2E+02 0.0047 18.7 3.7 29 11-42 16-44 (80)
80 PHA01327 hypothetical protein 21.0 34 0.00074 19.5 0.1 17 117-133 13-29 (49)
81 PF09061 Stirrup: Stirrup; In 20.9 2.4E+02 0.0051 18.0 4.1 27 55-82 9-35 (79)
82 PHA02681 ORF089 virion membran 20.7 2E+02 0.0044 19.3 3.6 17 9-25 10-26 (92)
83 PF14259 RRM_6: RNA recognitio 20.7 2E+02 0.0043 17.8 3.8 50 43-95 3-60 (70)
84 smart00360 RRM RNA recognition 20.4 2.1E+02 0.0045 17.0 5.6 39 55-93 10-57 (71)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-45 Score=330.99 Aligned_cols=271 Identities=32% Similarity=0.517 Sum_probs=216.7
Q ss_pred CCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCC-cchhh
Q 021610 30 RFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR-NVVFD 108 (310)
Q Consensus 30 ~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~-~~~~~ 108 (310)
+.++||||+|||+|||++++....+|+.+.+|+++|||+|++|+|+.|+|||||+++|+|+|++++..|++||. ....+
T Consensus 24 ~~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~ 103 (489)
T KOG0156|consen 24 RRNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLK 103 (489)
T ss_pred CCCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHH
Confidence 37899999999999999999776579999999999999999999999999999999999999999999999997 23446
Q ss_pred hhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHH
Q 021610 109 IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYR 188 (310)
Q Consensus 109 ~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (310)
.+.+++.++++++||+.||.+||++...+|+.+.++++.+...+|++.+++.+.+ .+.. ..++....+..++.|+|++
T Consensus 104 ~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~-~~~~-~~vdl~~~l~~~~~nvI~~ 181 (489)
T KOG0156|consen 104 YLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSK-SKKG-EPVDLSELLDLLVGNVICR 181 (489)
T ss_pred HhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh-cCCC-ceeeHHHHHHHHHHHHHHH
Confidence 6666788899988999999999999999999999999999999999999999987 2222 4577778888888899999
Q ss_pred HHhccccCCCCchHHHHHHHHHHHhhhhhhccccccccccc-ccc--cchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 021610 189 IMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP-ILR--PFLRGYLKICKEVKERRLQLFKDYFVEERKKLA 265 (310)
Q Consensus 189 ~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P-~l~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~ 265 (310)
++||.+++.++++....+..+..+...+... ....|++| +++ ++..+..+.. +.....+..+++.+|++|++..
T Consensus 182 ~~fG~rf~~~~~~~~~~~~~l~~~~~~~~~~--~~~~d~~p~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~i~eh~~~~ 258 (489)
T KOG0156|consen 182 MLFGRRFEEEDEEEFLELKELVEESLELLGS--FNLSDYFPFLLRWLDGISGLEKRL-KKVSKRLDEFLERIIDEHREKI 258 (489)
T ss_pred HHhCCccccCCchHHHHHHHHHHHHHHHhCC--ccHHHHhhHHHHhcccccHHHHHH-HHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999876555555566555554444443 34668889 555 3223333322 2233447788999999988732
Q ss_pred hcccCCCcchhcHHHHHHhhhc--CCC-CCHHHHHHHHHHHhhccccC
Q 021610 266 STKSMSNESLKCAIDHILDAQT--KGE-INEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 266 ~~~~~~d~~~~~ll~~ll~~~~--~~~-~~~e~i~~~~~~l~~aG~~~ 310 (310)
+ . .+ ..||+|+||+..+ +.. +|+++|+..|.||++||++|
T Consensus 259 -~-~-~~--~~D~vD~lL~~~~~~~~~~~t~~~i~~~~~dl~~AGtdT 301 (489)
T KOG0156|consen 259 -G-D-EE--GRDFVDALLKLMKEEKAEGLTDDHLKALILDLFLAGTDT 301 (489)
T ss_pred -c-c-CC--CCcHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccch
Confidence 1 1 11 2779999997743 223 99999999999999999986
No 2
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=6.5e-36 Score=275.92 Aligned_cols=305 Identities=83% Similarity=1.323 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHH
Q 021610 6 LEKTLLALFAAVVVAITVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPD 85 (310)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe 85 (310)
.|.+++.++++++..+++.+...++.+.||||+++|++||++++..+..+..+.+|.++||++|++++|++++|+++||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe 83 (503)
T PLN02394 4 LEKTLLGLFVAIVLALLVSKLRGKKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPE 83 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHH
Confidence 34433333333332223444444566789999999999999887655457889999999999999999999999999999
Q ss_pred HHHHHHHhcCcccCCCCCcchhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCc
Q 021610 86 HAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDP 165 (310)
Q Consensus 86 ~i~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~ 165 (310)
.+++++.+++..|++|+....++.+.+.+.+++++.+|+.|+++||.+..+.|+++.++.+.+.++++++++++.|.+..
T Consensus 84 ~i~~il~~~~~~~~~r~~~~~~~~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~ 163 (503)
T PLN02394 84 LAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANP 163 (503)
T ss_pred HHHHHHHhCCccccCCCCcchHhHhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 99999998888899887655566666666677888999999999998756899999999999999999999999998643
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHH
Q 021610 166 EAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEV 245 (310)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~ 245 (310)
...+..++....+...+.+++++++||.+++..+++.+..+.........+...+...+.+++|++.+.+..+.+.....
T Consensus 164 ~~~~~~v~~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (503)
T PLN02394 164 EAATEGVVIRRRLQLMMYNIMYRMMFDRRFESEDDPLFLKLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICQDV 243 (503)
T ss_pred hccCCcEecHHHHHHHHHHHHHHHHhCCCcccccchhHHHHHHHHHHHHHHhcccccchhhhchHHHHHhhHHHHHHHHH
Confidence 22122355666778888899999999998865444433333322222212212111223355666543322222222211
Q ss_pred HHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 246 KERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 246 ~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.......+.+.++++|++..+....+.....|+++.|+++.+++.++++++...+.++++||++|
T Consensus 244 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~l~~~~i~~~~~~~~~AG~dT 308 (503)
T PLN02394 244 KERRLALFKDYFVDERKKLMSAKGMDKEGLKCAIDHILEAQKKGEINEDNVLYIVENINVAAIET 308 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHhccccCCCCHHHHHHHHHHHHHhchhh
Confidence 11223334444566665421111001123468999999876666799999999999999999986
No 3
>PLN02971 tryptophan N-hydroxylase
Probab=100.00 E-value=2.3e-35 Score=273.86 Aligned_cols=279 Identities=21% Similarity=0.344 Sum_probs=194.1
Q ss_pred CCCCCCCCCCCCCcccccccccCCCcc-hHHHHHHHHhhC-CeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcc
Q 021610 28 GKRFKLPPGPLPVPVFGNWLQVGDDLN-HRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV 105 (310)
Q Consensus 28 ~~~~~~ppgP~~~pilGn~~~l~~~~~-~~~~~~~~~~yG-~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~ 105 (310)
+++.++||||+++|++||++++..+.+ +..+.+|+++|| ++|++|+|++|+|||+||++++++|++++..|++||...
T Consensus 53 ~r~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~ 132 (543)
T PLN02971 53 KKLHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTY 132 (543)
T ss_pred CCCCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCccc
Confidence 345679999999999999998754333 677899999999 899999999999999999999999999999999998644
Q ss_pred hhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHH
Q 021610 106 VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNN 185 (310)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (310)
..+.+..+..++++.++|+.||++||++..+++++..++.+.+.++++++.+++.+.+.... ++.++....+..+++++
T Consensus 133 ~~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~vd~~~~~~~~t~~v 211 (543)
T PLN02971 133 AQKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKN-SEPVDLRFVTRHYCGNA 211 (543)
T ss_pred chhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCceehHHHHHHHHHHH
Confidence 33333322245688899999999999987778888777788889999999999988753321 23467778888999999
Q ss_pred HHHHHhccccCCC-----CchHHHHHHHHHHHhhhhhhcccccccccccccccc-hhhHHHHHHHHHHHHHhHHHHHHHH
Q 021610 186 MYRIMFDRRFESQ-----DDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPF-LRGYLKICKEVKERRLQLFKDYFVE 259 (310)
Q Consensus 186 i~~~~fg~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~ 259 (310)
|++++||.++... +++..+....+..............+.+++|+++.+ ..++.+.... ..+.+..++..+|+
T Consensus 212 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~-~~~~~~~~~~~~i~ 290 (543)
T PLN02971 212 IKRLMFGTRTFSEKTEPDGGPTLEDIEHMDAMFEGLGFTFAFCISDYLPMLTGLDLNGHEKIMRE-SSAIMDKYHDPIID 290 (543)
T ss_pred HHHHHhCCcccccccccccchhHHHHHHHHHHHHHHHhccCCcHHHhCCchhhhcccchHHHHHH-HHHHHHHHHHHHHH
Confidence 9999999986321 112122222222211111111112344677876532 1121111111 22345667777887
Q ss_pred HHHhhhhcccCCCcchhcHHHHHHhhhcC-C--CCCHHHHHHHHHHHhhccccC
Q 021610 260 ERKKLASTKSMSNESLKCAIDHILDAQTK-G--EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 260 ~r~~~~~~~~~~d~~~~~ll~~ll~~~~~-~--~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+|++..+.+. .....|+++.|++..++ + .+++++|.+++.++++||++|
T Consensus 291 ~~~~~~~~~~--~~~~~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~l~~AG~dT 342 (543)
T PLN02971 291 ERIKMWREGK--RTQIEDFLDIFISIKDEAGQPLLTADEIKPTIKELVMAAPDN 342 (543)
T ss_pred HHHHHHhccC--CCCCcCHHHHHHhhhcccCCCCCCHHHHHHhHHHHheeccch
Confidence 7765221111 11235799999976432 2 499999999999999999986
No 4
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00 E-value=5e-34 Score=263.81 Aligned_cols=290 Identities=30% Similarity=0.444 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHH---hhcCCCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHH
Q 021610 12 ALFAAVVVAITVS---KLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAK 88 (310)
Q Consensus 12 ~~~~~~~~~~~~~---~~~~~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~ 88 (310)
+++++++++++++ +.+.+..++||||+++|++||++++..+ ++..+.+|+++||++|++++|+.++||++||++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~pPgp~~~P~iG~~~~~~~~-~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~ 89 (517)
T PLN02687 11 TVAVSVLVWCLLLRRGGSGKHKRPLPPGPRGWPVLGNLPQLGPK-PHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAA 89 (517)
T ss_pred HHHHHHHHHHHHhccccCCCCCCCCCccCCCCCccccHHhcCCc-hhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHH
Confidence 3334444444432 2333455689999999999999888654 78899999999999999999999999999999999
Q ss_pred HHHHhcCcccCCCCCcchhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccc
Q 021610 89 EVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAA 168 (310)
Q Consensus 89 evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 168 (310)
++|+++...|++|+.....+.+...+.+++++.+|+.|+++||++.+++|+.+.++++.+.+++++.++++.|.+...
T Consensus 90 ~il~~~~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~-- 167 (517)
T PLN02687 90 QFLRTHDANFSNRPPNSGAEHMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQHG-- 167 (517)
T ss_pred HHHHhcchhhhcCCCccchhhhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhcC--
Confidence 999998889999976544444433345668888999999999987557899999999999999999999999975322
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhccccCCCC-chHHHHHHHHHHHhhhhhhcccccccccccccccc-hhhHHHHHHHHH
Q 021610 169 TNGIVLRRRLQLMMYNNMYRIMFDRRFESQD-DPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPF-LRGYLKICKEVK 246 (310)
Q Consensus 169 ~~~~~~~~~~~~~~~~~i~~~~fg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~-~~~~~~~~~~~~ 246 (310)
+..++....+..+++++|+.++||.++...+ +.....+............ ...+.+++|+++.+ .....+.... .
T Consensus 168 ~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~P~l~~l~~~~~~~~~~~-~ 244 (517)
T PLN02687 168 TAPVNLGQLVNVCTTNALGRAMVGRRVFAGDGDEKAREFKEMVVELMQLAG--VFNVGDFVPALRWLDLQGVVGKMKR-L 244 (517)
T ss_pred CCceeHHHHHHHHHHHHHHHHHhCccccccCCcchHHHHHHHHHHHHHHhc--cCcHHHHhhhHHHhCcccHHHHHHH-H
Confidence 2346667778888889999999999864321 1111112221111111111 11122456654311 1111111111 1
Q ss_pred HHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhc-------CCCCCHHHHHHHHHHHhhccccC
Q 021610 247 ERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQT-------KGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 247 ~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~-------~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.+.+..++..++++|++.... +++...|+++.|++..+ ...++++++..++.++++||++|
T Consensus 245 ~~~~~~~~~~~i~~r~~~~~~---~~~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~eT 312 (517)
T PLN02687 245 HRRFDAMMNGIIEEHKAAGQT---GSEEHKDLLSTLLALKREQQADGEGGRITDTEIKALLLNLFTAGTDT 312 (517)
T ss_pred HHHHHHHHHHHHHHHHHhccc---cCcccccHHHHHHHhhccccccccccCCCHHHHHHHHHHHhccccCc
Confidence 234566777888887752211 11234579999997532 12599999999999999999986
No 5
>PLN02183 ferulate 5-hydroxylase
Probab=100.00 E-value=1e-32 Score=255.08 Aligned_cols=284 Identities=27% Similarity=0.439 Sum_probs=191.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhc
Q 021610 15 AAVVVAITVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQ 94 (310)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~ 94 (310)
+++++++++..+..++.++||||+++|++||++++... ++..+.+|+++||++|++++|+.|+|+++||++++++|.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~ppgp~~~Pl~G~l~~~~~~-~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~ 97 (516)
T PLN02183 19 ISLFLFLGLISRLRRRLPYPPGPKGLPIIGNMLMMDQL-THRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQ 97 (516)
T ss_pred HHHHHHHHHHhhccCCCCCCcCCCCCCeeccHHhcCCc-chHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhh
Confidence 33333333333344456789999999999999887443 56789999999999999999999999999999999999998
Q ss_pred CcccCCCCCcchhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhH
Q 021610 95 GVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVL 174 (310)
Q Consensus 95 ~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~ 174 (310)
+..|++|+.......+.+++.+++++.+|+.|+++||++.+++|+.+.++.+.++ .++++.+++.|.+.. +..++.
T Consensus 98 ~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~-~~~~~~~~~~l~~~~---~~~v~~ 173 (516)
T PLN02183 98 DSVFSNRPANIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASV-RDEVDSMVRSVSSNI---GKPVNI 173 (516)
T ss_pred hhhhcCCCcccchhccccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHhcC---CCcEeH
Confidence 8889998864444444444456688899999999999865689999999998886 468999999996522 234666
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccch-hhHHHHHHHHHHHHHhHH
Q 021610 175 RRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFL-RGYLKICKEVKERRLQLF 253 (310)
Q Consensus 175 ~~~~~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~-~~~~~~~~~~~~~~~~~~ 253 (310)
...+..++++++++++||.+++...++..+.+. ........ ....+++|+++.+. ....++... ..+.+..+
T Consensus 174 ~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~ 246 (516)
T PLN02183 174 GELIFTLTRNITYRAAFGSSSNEGQDEFIKILQ----EFSKLFGA--FNVADFIPWLGWIDPQGLNKRLVK-ARKSLDGF 246 (516)
T ss_pred HHHHHHHHHHHHHhHhhcCcccchHHHHHHHHH----HHHHHhCC--ccHHHhcchhHhcccccHHHHHHH-HHHHHHHH
Confidence 777888888999999999876542222111111 11111111 12234556554211 111111111 12345566
Q ss_pred HHHHHHHHHhhhhcc-cC--CCcchhcHHHHHHhhhc-------------CCCCCHHHHHHHHHHHhhccccC
Q 021610 254 KDYFVEERKKLASTK-SM--SNESLKCAIDHILDAQT-------------KGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 254 ~~~~i~~r~~~~~~~-~~--~d~~~~~ll~~ll~~~~-------------~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+..+|+++.+....+ .. ++....|+++.|++... ...+++++|.+++.++++||++|
T Consensus 247 ~~~~i~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 319 (516)
T PLN02183 247 IDDIIDDHIQKRKNQNADNDSEEAETDMVDDLLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIMDVMFGGTET 319 (516)
T ss_pred HHHHHHHHHHhhcccccccccccccccHHHHHHHhhhccccccccccccccCCCCHHHHHHHHHHHHHcchhh
Confidence 666776665321111 00 01134579999997421 11489999999999999999885
No 6
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00 E-value=1.9e-32 Score=252.61 Aligned_cols=285 Identities=23% Similarity=0.343 Sum_probs=196.5
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCc
Q 021610 17 VVVAITVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGV 96 (310)
Q Consensus 17 ~~~~~~~~~~~~~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~ 96 (310)
.++++++.+..+++.+.||||.++|++||++++....++..+.+|+++||++|++++|+.++||++|||++++++.+++.
T Consensus 13 ~~~~~~~~~~~~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~ 92 (499)
T PLN03234 13 AAAFFFLRSTTKKSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDL 92 (499)
T ss_pred HHHHHHHHHhcCCCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCc
Confidence 34444555555556678999999999999988854336778999999999999999999999999999999999999888
Q ss_pred ccCCCCCcchhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHH
Q 021610 97 EFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRR 176 (310)
Q Consensus 97 ~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~ 176 (310)
.|.+||.......+...+..+.+..+++.|+++||.+..++|+++.++++.+.++++++++++.|.+.... ++.+++.+
T Consensus 93 ~f~~r~~~~~~~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~-~~~vd~~~ 171 (499)
T PLN03234 93 NFTARPLLKGQQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQ-SGTVDLSE 171 (499)
T ss_pred cccCCCCchhhhhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccC-CCeEEHHH
Confidence 89998854333322222333456678899999999765689999999999999999999999999754322 23466677
Q ss_pred HHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccc--cchhhHHHHHHHHHHHHHhHHH
Q 021610 177 RLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR--PFLRGYLKICKEVKERRLQLFK 254 (310)
Q Consensus 177 ~~~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~--~~~~~~~~~~~~~~~~~~~~~~ 254 (310)
.+..++.+++++++||.+++...+ ....+............ .....+.+|+++ +.+.+..+... ...+.++.++
T Consensus 172 ~~~~~t~dvi~~~~fG~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~~~ 247 (499)
T PLN03234 172 LLLSFTNCVVCRQAFGKRYNEYGT-EMKRFIDILYETQALLG--TLFFSDLFPYFGFLDNLTGLSARLK-KAFKELDTYL 247 (499)
T ss_pred HHHHHHHHHHHHHHhCCcccccch-hHHHHHHHHHHHHHHcC--CCcHHHHhhHHHHhhhhhhHHHHHH-HHHHHHHHHH
Confidence 788888899999999998765322 22222221111111111 112234455543 11111111111 1234566777
Q ss_pred HHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcC----CCCCHHHHHHHHHHHhhccccC
Q 021610 255 DYFVEERKKLASTKSMSNESLKCAIDHILDAQTK----GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 255 ~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~----~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
..+|+++++..++ +..+.|+++.|++..++ ..+++++|.+++.++++||++|
T Consensus 248 ~~~i~~~~~~~~~----~~~~~d~l~~l~~~~~~~~~~~~~~~~~i~~~~~~ll~AG~dT 303 (499)
T PLN03234 248 QELLDETLDPNRP----KQETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDT 303 (499)
T ss_pred HHHHHHHHhhccc----CCCcccHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHhcchhh
Confidence 7888876642111 12346799999865422 2589999999999999999886
No 7
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00 E-value=2.6e-32 Score=252.53 Aligned_cols=285 Identities=25% Similarity=0.398 Sum_probs=192.5
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccC
Q 021610 20 AITVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFG 99 (310)
Q Consensus 20 ~~~~~~~~~~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~ 99 (310)
+++.++..+++.+.||||+++|++||++++... ++..+.+|+++||++|++++|+.++|+++||+++++||.++...|+
T Consensus 20 ~~~~~~~~~~~~~~ppgp~~~pl~G~~~~~~~~-~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~ 98 (514)
T PLN03112 20 WRWLNASMRKSLRLPPGPPRWPIVGNLLQLGPL-PHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFA 98 (514)
T ss_pred HHHccccccCCCCCccCCCCCCeeeeHHhcCCc-hHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccc
Confidence 333444445667789999999999999887643 6888999999999999999999999999999999999999888999
Q ss_pred CCCCcchhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH
Q 021610 100 SRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ 179 (310)
Q Consensus 100 ~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 179 (310)
+|+..........+..++++..+|+.|+++||.+.+++|+.+.++.+.+.+.++++++++.+.+.... +..++....+.
T Consensus 99 ~~~~~~~~~~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~-~~~vd~~~~~~ 177 (514)
T PLN03112 99 SRPRTLAAVHLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQT-GKPVNLREVLG 177 (514)
T ss_pred cCCCcccceeeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhcc-CCeeeHHHHHH
Confidence 88753222111112234567789999999999876689999999999999999999999987643321 23466677778
Q ss_pred HHHHHHHHHHHhccccCCCCc---hHHHHHHHHHHHhhhhhhcccccccccccccccch-hhHHHHHHHHHHHHHhHHHH
Q 021610 180 LMMYNNMYRIMFDRRFESQDD---PLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFL-RGYLKICKEVKERRLQLFKD 255 (310)
Q Consensus 180 ~~~~~~i~~~~fg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~-~~~~~~~~~~~~~~~~~~~~ 255 (310)
..+.+++++++||.++....+ .....+............ .....+++|+++.+. .+..+... ...+.+..+.+
T Consensus 178 ~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~ 254 (514)
T PLN03112 178 AFSMNNVTRMLLGKQYFGAESAGPKEAMEFMHITHELFRLLG--VIYLGDYLPAWRWLDPYGCEKKMR-EVEKRVDEFHD 254 (514)
T ss_pred HHHHHHHHHHHcCCccccccccchHHHHHHHHHHHHHHHHcC--CCcHHHhChHHHhcCcccHHHHHH-HHHHHHHHHHH
Confidence 888899999999998643211 111112221111111111 112234556544211 11111111 12234556677
Q ss_pred HHHHHHHhhhhcccCCCcchhcHHHHHHhhhc-CC--CCCHHHHHHHHHHHhhccccC
Q 021610 256 YFVEERKKLASTKSMSNESLKCAIDHILDAQT-KG--EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 256 ~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~-~~--~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.+++++++..+. ........|+++.++++.+ ++ .+++++|.+++.++++||++|
T Consensus 255 ~~i~~~~~~~~~-~~~~~~~~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 311 (514)
T PLN03112 255 KIIDEHRRARSG-KLPGGKDMDFVDVLLSLPGENGKEHMDDVEIKALMQDMIAAATDT 311 (514)
T ss_pred HHHHHHHHhhcc-cccCCccchHHHHHHHhhccccccCCCHHHHHHHHHHHhcccccc
Confidence 778776652211 1101223579999997542 22 489999999999999999986
No 8
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00 E-value=8.4e-32 Score=247.91 Aligned_cols=287 Identities=24% Similarity=0.367 Sum_probs=192.6
Q ss_pred HHHHHHHHHHhh-cCCCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHh
Q 021610 15 AAVVVAITVSKL-RGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 15 ~~~~~~~~~~~~-~~~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~ 93 (310)
+.++..+++++. ..+..++||||+++|++||++++... ++..+.+|+++||++|++|+|+.|+|+++||++++++|.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~pPgp~~~Pl~G~l~~~~~~-~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~ 91 (504)
T PLN00110 13 LFFITRFFIRSLLPKPSRKLPPGPRGWPLLGALPLLGNM-PHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKT 91 (504)
T ss_pred HHHHHHHHHHHHhhcccCCCcccCCCCCeeechhhcCCc-hHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHh
Confidence 334444444442 23455789999999999999887543 7889999999999999999999999999999999999999
Q ss_pred cCcccCCCCCcchhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChh
Q 021610 94 QGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIV 173 (310)
Q Consensus 94 ~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 173 (310)
+...|++|+..........++.+++++.+|+.|+++||++..+.|+++.++.+.+.+.+++..+++.+.+.... ++.++
T Consensus 92 ~~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~-g~~~~ 170 (504)
T PLN00110 92 LDINFSNRPPNAGATHLAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQR-GEPVV 170 (504)
T ss_pred cchhhcCCCCccchhhhccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccC-CCcEe
Confidence 88899999854433322233345688899999999999986568999999999999999999999998764322 23455
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccch-hhHHHHHHHHHHHHHhH
Q 021610 174 LRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFL-RGYLKICKEVKERRLQL 252 (310)
Q Consensus 174 ~~~~~~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~-~~~~~~~~~~~~~~~~~ 252 (310)
....+...+.++|++++||.++....+.....+............ ...+.+++|++.... ..+.+.... ..+.+..
T Consensus 171 ~~~~~~~~~~~vi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~l~~l~~~~~~~~~~~-~~~~~~~ 247 (504)
T PLN00110 171 VPEMLTFSMANMIGQVILSRRVFETKGSESNEFKDMVVELMTTAG--YFNIGDFIPSIAWMDIQGIERGMKH-LHKKFDK 247 (504)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccCchhHHHHHHHHHHHHHHhc--cccHHHHcchHhhhCcchHHHHHHH-HHHHHHH
Confidence 556666777799999999998621111111111111111111111 112235566543111 111111111 1234555
Q ss_pred HHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhc--C-CCCCHHHHHHHHHHHhhccccC
Q 021610 253 FKDYFVEERKKLASTKSMSNESLKCAIDHILDAQT--K-GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 253 ~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~--~-~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
++...++++++.... +....|+++.|++..+ + ..++++++.+++.++++||++|
T Consensus 248 ~~~~~i~~~~~~~~~----~~~~~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~Ag~dT 304 (504)
T PLN00110 248 LLTRMIEEHTASAHE----RKGNPDFLDVVMANQENSTGEKLTLTNIKALLLNLFTAGTDT 304 (504)
T ss_pred HHHHHHHHHHhhccc----cccCCChhhHHhhcccccCCCCCCHHHHHHHHHhhhcccccc
Confidence 666777766552111 1123579999996532 2 2599999999999999999986
No 9
>PLN00168 Cytochrome P450; Provisional
Probab=100.00 E-value=2e-31 Score=246.55 Aligned_cols=275 Identities=19% Similarity=0.299 Sum_probs=184.3
Q ss_pred CCCCCCCCCCCCcccccccccCC--CcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcch
Q 021610 29 KRFKLPPGPLPVPVFGNWLQVGD--DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVV 106 (310)
Q Consensus 29 ~~~~~ppgP~~~pilGn~~~l~~--~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~ 106 (310)
+..++||||+++|++||++++.. ..++..+.+|+++||++|++++|+.|+|+++|||+++++|++++..|++||....
T Consensus 32 ~~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~~ 111 (519)
T PLN00168 32 KGRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVAS 111 (519)
T ss_pred CCCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCcccc
Confidence 34568999999999999987642 2257789999999999999999999999999999999999999999999986443
Q ss_pred hhhhcCCCcee-EeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHH
Q 021610 107 FDIFTGKGQDM-VFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNN 185 (310)
Q Consensus 107 ~~~~~~~~~~~-~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (310)
... .+.+.++ .+.++|+.|+++||.+.+++|+++.++.+.+.++++++++++.|.+.... +..++....+...+.++
T Consensus 112 ~~~-~~~~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~-~~~v~~~~~~~~~~~~i 189 (519)
T PLN00168 112 SRL-LGESDNTITRSSYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRREAED-AAAPRVVETFQYAMFCL 189 (519)
T ss_pred hhh-hccCCCceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcCHHHHHHHHHHHH
Confidence 333 3332222 33478999999998656799999999999999999999999999764321 12344455566666778
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccc-hhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021610 186 MYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPF-LRGYLKICKEVKERRLQLFKDYFVEERKKL 264 (310)
Q Consensus 186 i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 264 (310)
++.++||.+++... ...+............ ......+++|.+.+. ..+..+.... ..+.+..++..+|++|++.
T Consensus 190 i~~~~fG~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~p~l~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 264 (519)
T PLN00168 190 LVLMCFGERLDEPA---VRAIAAAQRDWLLYVS-KKMSVFAFFPAVTKHLFRGRLQKALA-LRRRQKELFVPLIDARREY 264 (519)
T ss_pred HHHHHcCCCcChhh---HHHHHHHHHHHHHHhc-CCCCHHHhCcchhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999875321 1112221111100111 111223556654421 1111111111 2244566777788777652
Q ss_pred hhc----ccCCC---cchhcHHHHHHhhh---cC-CCCCHHHHHHHHHHHhhccccC
Q 021610 265 AST----KSMSN---ESLKCAIDHILDAQ---TK-GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 265 ~~~----~~~~d---~~~~~ll~~ll~~~---~~-~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
... +...+ ....|+++.|++.. ++ ..+++++|.+++.++++||++|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~AG~dT 321 (519)
T PLN00168 265 KNHLGQGGEPPKKETTFEHSYVDTLLDIRLPEDGDRALTDDEIVNLCSEFLNAGTDT 321 (519)
T ss_pred hhhccccCccccccccccccHHHHHHhhhccccccCCCCHHHHHHHHHHHHHhcchH
Confidence 110 00000 01357999999753 12 2599999999999999999985
No 10
>PLN03018 homomethionine N-hydroxylase
Probab=100.00 E-value=6.1e-31 Score=243.04 Aligned_cols=278 Identities=17% Similarity=0.260 Sum_probs=182.5
Q ss_pred CCCCCCCCCCCcccccccccCCCcch-HHHHHHHHhh-CCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchh
Q 021610 30 RFKLPPGPLPVPVFGNWLQVGDDLNH-RNLSDLAKKY-GDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF 107 (310)
Q Consensus 30 ~~~~ppgP~~~pilGn~~~l~~~~~~-~~~~~~~~~y-G~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~ 107 (310)
+.++||||+++|++||++++..+.++ ..+.++.++| |++|++|+|++|+|+|+|||+++++|++++..|++||.....
T Consensus 38 ~~~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~ 117 (534)
T PLN03018 38 SRQLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIM 117 (534)
T ss_pred CCCCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhh
Confidence 34589999999999999987543232 3355666665 799999999999999999999999999998899999865554
Q ss_pred hhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHH
Q 021610 108 DIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMY 187 (310)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ 187 (310)
+.+.+++.++++..+|+.|+++||++.+.+++.+..+.+...++.++.++++.|.+.... +..++....+..+++++|+
T Consensus 118 ~~l~~~~~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~vd~~~~~~~~t~~vi~ 196 (534)
T PLN03018 118 ETIGDNYKSMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQR-SETVDVRELSRVYGYAVTM 196 (534)
T ss_pred hhhccCCCceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCceeHHHHHHHHHHHHHH
Confidence 444333345667677999999999886444566666667777778899999999853321 2346777888889999999
Q ss_pred HHHhccccCCC------CchHHHHHHHHHHHhhhhhhcc-ccccccccc-ccccch-hhHHHHHHHHHHHHHhHHHHHHH
Q 021610 188 RIMFDRRFESQ------DDPLFNRLKALNGERSRLAQSF-EYNYGDFIP-ILRPFL-RGYLKICKEVKERRLQLFKDYFV 258 (310)
Q Consensus 188 ~~~fg~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~P-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i 258 (310)
+++||.++... ++.....+.............+ .....+++| +++++. .+..+... ...+.+..+++.++
T Consensus 197 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~i 275 (534)
T PLN03018 197 RMLFGRRHVTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGFSPVDYVERWLRGWNIDGQEERAK-VNVNLVRSYNNPII 275 (534)
T ss_pred HHHhCCccccccccccccccchhHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhhcccchHHHHH-HHHHHHHHHHHHHH
Confidence 99999987431 1111111111111111111111 112234455 444221 12111111 12234567778888
Q ss_pred HHHHhhhhcccCCCcchhcHHHHHHhhhc-CC--CCCHHHHHHHHHHHhhccccC
Q 021610 259 EERKKLASTKSMSNESLKCAIDHILDAQT-KG--EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 259 ~~r~~~~~~~~~~d~~~~~ll~~ll~~~~-~~--~~~~e~i~~~~~~l~~aG~~~ 310 (310)
++|++..... .....+.|+++.|++..+ ++ .+++++|...+.++++||++|
T Consensus 276 ~~~~~~~~~~-~~~~~~~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~~~~aG~dT 329 (534)
T PLN03018 276 DERVELWREK-GGKAAVEDWLDTFITLKDQNGKYLVTPDEIKAQCVEFCIAAIDN 329 (534)
T ss_pred HHHHHHhhhc-cCCCCcccHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHhhhH
Confidence 8876521111 011124579999997643 23 389999999999999999875
No 11
>PLN02655 ent-kaurene oxidase
Probab=100.00 E-value=2.4e-31 Score=243.01 Aligned_cols=270 Identities=16% Similarity=0.249 Sum_probs=187.1
Q ss_pred CCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcCC
Q 021610 34 PPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGK 113 (310)
Q Consensus 34 ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~~ 113 (310)
||||+++|++||++++..+.++..+.+|+++||++|++++|++++|+|+||++++++|.++...|++|+.......+.++
T Consensus 1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~ 80 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRD 80 (466)
T ss_pred CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcC
Confidence 79999999999999986555788999999999999999999999999999999999999999999998754444445444
Q ss_pred CceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCccc-ccCChhHHHHHHHHHHHHHHHHHhc
Q 021610 114 GQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEA-ATNGIVLRRRLQLMMYNNMYRIMFD 192 (310)
Q Consensus 114 ~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~fg 192 (310)
+..++...+|+.|+++||.+.+++|+...++.+.+.++++++.+++.+.+.... .++.++....+..+++++++.++||
T Consensus 81 ~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG 160 (466)
T PLN02655 81 KSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALG 160 (466)
T ss_pred CCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhc
Confidence 433444467999999999887788998888999999999999999998754321 2235677788888899999999999
Q ss_pred cccCCCCchHHH-H---HHHHHHHhhhhhhcc-cccccccccccccch-hhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 021610 193 RRFESQDDPLFN-R---LKALNGERSRLAQSF-EYNYGDFIPILRPFL-RGYLKICKEVKERRLQLFKDYFVEERKKLAS 266 (310)
Q Consensus 193 ~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~-~~~~~d~~P~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~ 266 (310)
.+++...+..+. . ...+......+.... ...+.+++|+++... +.+.+.... .......+...+++++++...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~ 239 (466)
T PLN02655 161 EDVESVYVEELGTEISKEEIFDVLVHDMMMCAIEVDWRDFFPYLSWIPNKSFETRVQT-TEFRRTAVMKALIKQQKKRIA 239 (466)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHhCCcchhhhhhhhhhcCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 987643211110 0 011111111111111 112335677654211 111111111 122334566677776654211
Q ss_pred cccCCCcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 267 TKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 267 ~~~~~d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
. ++.+.|+++.|++.. ..+++++|.+.+.++++||++|
T Consensus 240 ~----~~~~~d~l~~ll~~~--~~ls~~~i~~~~~~~~~ag~dt 277 (466)
T PLN02655 240 R----GEERDCYLDFLLSEA--THLTDEQLMMLVWEPIIEAADT 277 (466)
T ss_pred C----CCCcccHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHH
Confidence 1 112357999999763 3599999999999999999875
No 12
>PLN02966 cytochrome P450 83A1
Probab=100.00 E-value=6.7e-31 Score=242.27 Aligned_cols=282 Identities=26% Similarity=0.406 Sum_probs=188.7
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccC
Q 021610 20 AITVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFG 99 (310)
Q Consensus 20 ~~~~~~~~~~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~ 99 (310)
++++.+..++..++||||+++|++||++++....++..+.+|.++||++|++++|+.++|+++||++++++|.+++..|.
T Consensus 17 ~~~~~~~~~~~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~ 96 (502)
T PLN02966 17 FFLYQKPKTKRYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFA 96 (502)
T ss_pred HHHHhccccCCCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCccccc
Confidence 33344444555678999999999999998754447889999999999999999999999999999999999998888888
Q ss_pred CCCCcchhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH
Q 021610 100 SRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ 179 (310)
Q Consensus 100 ~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 179 (310)
+|+..........+..++.+..+|+.|+++||.+.+++|+++.++.+.+.+++++.++++.|.+.... ++.++....+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~-~~~vdl~~~~~ 175 (502)
T PLN02966 97 DRPPHRGHEFISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAADK-SEVVDISELML 175 (502)
T ss_pred CCCCCccceeeccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCceeHHHHHH
Confidence 77643222222222234456678999999999856799999999999999999999999999764321 23466677788
Q ss_pred HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccc--cchhhHHHHHHHHHHHHHhHHHHHH
Q 021610 180 LMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR--PFLRGYLKICKEVKERRLQLFKDYF 257 (310)
Q Consensus 180 ~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~--~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (310)
.+++++|+.++||.+++..++. ...+............ .....+++|+++ +.+.++.+.... ..+....++..+
T Consensus 176 ~~t~dvi~~~~fG~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 251 (502)
T PLN02966 176 TFTNSVVCRQAFGKKYNEDGEE-MKRFIKILYGTQSVLG--KIFFSDFFPYCGFLDDLSGLTAYMKE-CFERQDTYIQEV 251 (502)
T ss_pred HHHHHHHHHHHhCCccCccchH-HHHHHHHHHHHHHHhC--cccHHHhhchhhhhhhhccHHHHHHH-HHHHHHHHHHHH
Confidence 8888999999999988643322 2222211111111111 111224455432 111111111111 112234455556
Q ss_pred HHHHHhhhhcccCCCcchhcHHHHHHhhhcC----CCCCHHHHHHHHHHHhhccccC
Q 021610 258 VEERKKLASTKSMSNESLKCAIDHILDAQTK----GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 258 i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~----~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
++++..... .+....++++.|++..++ ..++++++.+++.++++||+||
T Consensus 252 i~~~~~~~~----~~~~~~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~eT 304 (502)
T PLN02966 252 VNETLDPKR----VKPETESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDT 304 (502)
T ss_pred HHHHHhccc----cccccccHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHhccccc
Confidence 655433110 011234699999965322 2589999999999999999986
No 13
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.3e-31 Score=234.58 Aligned_cols=270 Identities=21% Similarity=0.204 Sum_probs=176.8
Q ss_pred CCCCCCCCCCCCCcccccccccCCCc-chHH-HHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcc
Q 021610 28 GKRFKLPPGPLPVPVFGNWLQVGDDL-NHRN-LSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV 105 (310)
Q Consensus 28 ~~~~~~ppgP~~~pilGn~~~l~~~~-~~~~-~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~ 105 (310)
+++++ .|||+|+|++||+..+.... +... ...|.++ |++++++.|.+|.++|+|||+||+||+++.++|++|....
T Consensus 28 w~rrG-i~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~-~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~~~~ 105 (499)
T KOG0158|consen 28 WRRRG-IPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKY-RPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRKRPI 105 (499)
T ss_pred hccCC-CCCCCCCCcEecHHHHHhccCcHHHHHHHHhcC-CCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCCCCC
Confidence 33335 49999999999998865422 2333 3445444 9999999999999999999999999999999999954212
Q ss_pred hhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHH
Q 021610 106 VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNN 185 (310)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (310)
..+.-...+...+|...|++||++|..+ .|.|++.+++.+.+.+++.+.++++++.+..... ...+..+....++++|
T Consensus 106 ~~d~~~~l~~~~Lf~~~g~~WK~lR~~l-sP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~-~~~~~~dl~~~yT~DV 183 (499)
T KOG0158|consen 106 YGDPEDPLSALNLFFLRGERWKRLRTKL-SPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGG-QEGEIKDLCARYTTDV 183 (499)
T ss_pred cCCCCCcccccCchhccCchHHHHHHhh-ccccchhhHHHHHHHHHHHHHHHHHHHHHhhccc-CCccHHHHHHHHHHHH
Confidence 2221111122448899999999999987 5999999999999999999999999999754321 2344455566889999
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHhhhhhhccc--ccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021610 186 MYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFE--YNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKK 263 (310)
Q Consensus 186 i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~ 263 (310)
|.+++||.+.++..++..............+...+. ......+|.+...++. ........+.+...+...+++|..
T Consensus 184 I~~~AfG~~~~s~~d~~~~F~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~l~~--~~~~~~~~~~~~~~v~~~v~~R~~ 261 (499)
T KOG0158|consen 184 IGSCAFGLDANSLRDPKAEFRRMGRRAFFLSRGLFPLKFMLIFLFPKLALPLRV--KLFPEDVTDFFRKLVNSRVEQREK 261 (499)
T ss_pred HhHhhcccchhhhcCchHHHHHhhHHHHHHhhccchHhHhHHHHhHHHHHhhhc--ccChHHHHHHHHHHHHHHHHHHHh
Confidence 999999999887655432111111001000000000 0011123333322111 001111123344556666677643
Q ss_pred hhhcccCCCcchhcHHHHHHhhhcC--------CCCCHHHHHHHHHHHhhccccC
Q 021610 264 LASTKSMSNESLKCAIDHILDAQTK--------GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 264 ~~~~~~~~d~~~~~ll~~ll~~~~~--------~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
++. .+.||+|.|++++.+ +.+|.++|..+|..+++||.||
T Consensus 262 --~~~-----~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~AGfeT 309 (499)
T KOG0158|consen 262 --ENI-----ERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLAGFET 309 (499)
T ss_pred --cCC-----CCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHhhhHh
Confidence 222 345599999987532 1499999999999999999986
No 14
>PTZ00404 cytochrome P450; Provisional
Probab=99.97 E-value=9e-30 Score=233.89 Aligned_cols=267 Identities=20% Similarity=0.296 Sum_probs=180.2
Q ss_pred CCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhh
Q 021610 29 KRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (310)
Q Consensus 29 ~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~ 108 (310)
.+.+.+|||+++|++||++++.. .++..+.+|.++||++|++++|+.++|+++||+++++++.++...|.+|+......
T Consensus 26 ~~~~~~pgp~~~p~~G~~~~~~~-~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~ 104 (482)
T PTZ00404 26 IHKNELKGPIPIPILGNLHQLGN-LPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIK 104 (482)
T ss_pred ccCCCCCCCCCCCeeccHhhhcc-cHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceee
Confidence 34456899999999999988765 37889999999999999999999999999999999999998877888887543332
Q ss_pred h-hcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHH
Q 021610 109 I-FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMY 187 (310)
Q Consensus 109 ~-~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ 187 (310)
. ..+. .+++.+|+.|+++||++ .+.|+++.++.+.+.+.+++.++++.|.+.... ++.++....+...+.++|+
T Consensus 105 ~~~~~~---~l~~~~g~~w~~~Rk~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~-~~~vd~~~~~~~~~~dvi~ 179 (482)
T PTZ00404 105 HGTFYH---GIVTSSGEYWKRNREIV-GKAMRKTNLKHIYDLLDDQVDVLIESMKKIESS-GETFEPRYYLTKFTMSAMF 179 (482)
T ss_pred eeccCC---ceeccChHHHHHHHHHH-HHHHhhhccccHHHHHHHHHHHHHHHHHHHHhc-CCccCHHHHHHHHHHHHHH
Confidence 1 1222 36778999999999987 589999999999999999999999999753321 2346667778888899999
Q ss_pred HHHhccccCCCCc---hHHHHHHHHHHHhhhhhhcc-cccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021610 188 RIMFDRRFESQDD---PLFNRLKALNGERSRLAQSF-EYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKK 263 (310)
Q Consensus 188 ~~~fg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~ 263 (310)
+++||.++...++ .....+.. ....+.... .....+++|++++.+..+...... ..+.+..+++..++++++
T Consensus 180 ~~~fG~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~ 255 (482)
T PTZ00404 180 KYIFNEDISFDEDIHNGKLAELMG---PMEQVFKDLGSGSLFDVIEITQPLYYQYLEHTDK-NFKKIKKFIKEKYHEHLK 255 (482)
T ss_pred HHHhccccccccccchhHHHHHHH---HHHHHHHHhCCCchhhhhhHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999998754221 11111111 111111111 111223344444332222211111 123445556666665544
Q ss_pred hhhcccCCCcchhcHHHHHHhhhcC-CCCCHHHHHHHHHHHhhccccC
Q 021610 264 LASTKSMSNESLKCAIDHILDAQTK-GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 264 ~~~~~~~~d~~~~~ll~~ll~~~~~-~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
... ...+.|+++.|+++.++ ...+.++|.+++.++++||++|
T Consensus 256 ~~~-----~~~~~dll~~ll~~~~~~~~~~~~~i~~~~~~~~~AG~dT 298 (482)
T PTZ00404 256 TID-----PEVPRDLLDLLIKEYGTNTDDDILSILATILDFFLAGVDT 298 (482)
T ss_pred ccC-----CCCcccHHHHHHHHhccCCcccHHHHHHHHHHHHHhccch
Confidence 111 11245799999976422 1222335889999999999986
No 15
>PLN02290 cytokinin trans-hydroxylase
Probab=99.97 E-value=1.5e-29 Score=234.23 Aligned_cols=264 Identities=17% Similarity=0.227 Sum_probs=176.6
Q ss_pred CCCCCCCCcccccccccCC------------------CcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhc
Q 021610 33 LPPGPLPVPVFGNWLQVGD------------------DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQ 94 (310)
Q Consensus 33 ~ppgP~~~pilGn~~~l~~------------------~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~ 94 (310)
-||||+++|++||++++.. ......+.+|+++||++|++|+|+.++||++||++++++|.++
T Consensus 43 ~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il~~~ 122 (516)
T PLN02290 43 GVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELLTKY 122 (516)
T ss_pred CCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHHhcC
Confidence 4899999999999988642 1122356889999999999999999999999999999999987
Q ss_pred CcccCCCCCcch--hhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCCh
Q 021610 95 GVEFGSRTRNVV--FDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGI 172 (310)
Q Consensus 95 ~~~f~~R~~~~~--~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 172 (310)
..+.+|+.... ...+.+++ ++.++|+.|+++||++ .+.|+++.++.+.+.+.++++++++.|.+....++..+
T Consensus 123 -~~~~~r~~~~~~~~~~~~g~~---l~~~~g~~Wk~~Rk~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~v 197 (516)
T PLN02290 123 -NTVTGKSWLQQQGTKHFIGRG---LLMANGADWYHQRHIA-APAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQTEV 197 (516)
T ss_pred -CCCCCCcchhhhHHHHHhcCC---ccccCchHHHHHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence 45677763211 12233433 6778899999999987 58999999999999999999999999986432111245
Q ss_pred hHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhH
Q 021610 173 VLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQL 252 (310)
Q Consensus 173 ~~~~~~~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~ 252 (310)
+....+..+++++|++++||.+++.. ++....+..+........ ....+|+++.+..++.+... ...+.+..
T Consensus 198 d~~~~~~~~~~~vi~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~p~~~~~p~~~~~~~~-~~~~~~~~ 269 (516)
T PLN02290 198 EIGEYMTRLTADIISRTEFDSSYEKG-KQIFHLLTVLQRLCAQAT------RHLCFPGSRFFPSKYNREIK-SLKGEVER 269 (516)
T ss_pred EhHHHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHHHHHHHhh------hhhcCchhhhCCChhHHHHH-HHHHHHHH
Confidence 66777888888999999999987542 222222222211111110 11123433211111111111 12234566
Q ss_pred HHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhc----C-CCCCHHHHHHHHHHHhhccccC
Q 021610 253 FKDYFVEERKKLASTKSMSNESLKCAIDHILDAQT----K-GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 253 ~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~----~-~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
++..+|++|++..+.+. .+....|+++.+++..+ + ..+++++|.+++.++++||++|
T Consensus 270 ~~~~~i~~~~~~~~~~~-~~~~~~d~l~~ll~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 331 (516)
T PLN02290 270 LLMEIIQSRRDCVEIGR-SSSYGDDLLGMLLNEMEKKRSNGFNLNLQLIMDECKTFFFAGHET 331 (516)
T ss_pred HHHHHHHHHHHHhhccc-CCCCCCCHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhhhHHH
Confidence 77788877765221111 11234679999997532 1 1488999999999999999875
No 16
>PLN02500 cytochrome P450 90B1
Probab=99.97 E-value=1.2e-28 Score=226.81 Aligned_cols=258 Identities=17% Similarity=0.222 Sum_probs=172.5
Q ss_pred hcCCCCCCCCCCCCCcccccccccCC----CcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCC
Q 021610 26 LRGKRFKLPPGPLPVPVFGNWLQVGD----DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (310)
Q Consensus 26 ~~~~~~~~ppgP~~~pilGn~~~l~~----~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R 101 (310)
.++++.++||||+++|++||++++.. +.++..+.+|+++||++|++++|++++||++||++++++|++++..|+++
T Consensus 32 ~~~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~ 111 (490)
T PLN02500 32 PKQKRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECS 111 (490)
T ss_pred cccCCCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEee
Confidence 33455678999999999999865421 22566789999999999999999999999999999999999988888765
Q ss_pred CCcchhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHH-hHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHH
Q 021610 102 TRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ-QRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQL 180 (310)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~ 180 (310)
..... ..+.++ ..++..+|+.||++||++. +.|+++.++. +.+.+++.+.++++.|.+. ..++....+..
T Consensus 112 ~~~~~-~~~~g~--~~~~~~~g~~wr~~Rk~~~-~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~vd~~~~~~~ 182 (490)
T PLN02500 112 YPRSI-GGILGK--WSMLVLVGDMHRDMRSISL-NFLSHARLRTHLLKEVERHTLLVLDSWKEN-----STFSAQDEAKK 182 (490)
T ss_pred CchHH-HHHhCc--ccccccCCHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHhCCC-----CCEEehHHHHH
Confidence 32222 223332 2356678999999999874 8899988887 5677888888888887532 23556677888
Q ss_pred HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHH
Q 021610 181 MMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEE 260 (310)
Q Consensus 181 ~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 260 (310)
++++++++++||.+.+..+ ...+.. .......... .....+|... .++..+ ..+.+..++..++++
T Consensus 183 ~~~~vi~~~~fg~~~~~~~---~~~~~~---~~~~~~~~~~-~~~~~~p~~~--~~~~~~-----~~~~~~~~~~~~i~~ 248 (490)
T PLN02500 183 FTFNLMAKHIMSMDPGEEE---TEQLKK---EYVTFMKGVV-SAPLNFPGTA--YRKALK-----SRATILKFIERKMEE 248 (490)
T ss_pred HHHHHHHHHHhCCCCCchH---HHHHHH---HHHHHHhhhh-cchhcCCCcc--cHHHHH-----HHHHHHHHHHHHHHH
Confidence 8999999999998754211 111111 0001111000 0111233211 111111 123456667777777
Q ss_pred HHhhhhcccCCCcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 261 RKKLASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 261 r~~~~~~~~~~d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
|++..+.+. .+..+.|+++.+++. ..+|+++|.+++.++++||++|
T Consensus 249 ~~~~~~~~~-~~~~~~d~l~~ll~~---~~ls~~~i~~~~~~ll~AG~dT 294 (490)
T PLN02500 249 RIEKLKEED-ESVEEDDLLGWVLKH---SNLSTEQILDLILSLLFAGHET 294 (490)
T ss_pred HHHhhhccc-CCCCcchHHHHHHhc---cCCCHHHHHHHHHHHHHhhhhH
Confidence 664221111 011245799999974 3589999999999999999985
No 17
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.96 E-value=2.9e-28 Score=224.17 Aligned_cols=266 Identities=12% Similarity=0.110 Sum_probs=168.0
Q ss_pred CCCCCCCcccccccccCCCc--chHHHHHHHHhhCCeEE---EEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhh
Q 021610 34 PPGPLPVPVFGNWLQVGDDL--NHRNLSDLAKKYGDVLL---LRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (310)
Q Consensus 34 ppgP~~~pilGn~~~l~~~~--~~~~~~~~~~~yG~v~~---~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~ 108 (310)
.|||+++|++||++++..+. .+.++.+...+||..++ .|+|+.|+|+++||+++++||.++...|++++......
T Consensus 33 ~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~~~~ 112 (500)
T PLN02169 33 QPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFKKIF 112 (500)
T ss_pred CCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHHHHH
Confidence 48999999999998764432 22344444455887665 68899999999999999999999877787765322222
Q ss_pred hhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHH--hHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHH
Q 021610 109 IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ--QRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNM 186 (310)
Q Consensus 109 ~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i 186 (310)
.+.|+| +++++|+.||++||++ .|+|+.+.++. +.+.++++++.+++.|.+.+.. +..+++...+..+++++|
T Consensus 113 ~~~g~g---l~~~~g~~Wr~~Rk~l-~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~vd~~~~~~~~t~dvi 187 (500)
T PLN02169 113 DVLGEG---ILTVDFELWEDLRKSN-HALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHE-NIIIDLQDVFMRFMFDTS 187 (500)
T ss_pred HhhcCc---ccccCcHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCeEeHHHHHHHHHHHHH
Confidence 334444 7778899999999987 59999887664 3366778888899888753321 234677788889999999
Q ss_pred HHHHhccccCCCCchH-HHHHHHHHHHhhhhhhcccccccccccccc----cch-hhHHHHHHHHHHHHHhHHHHHHHHH
Q 021610 187 YRIMFDRRFESQDDPL-FNRLKALNGERSRLAQSFEYNYGDFIPILR----PFL-RGYLKICKEVKERRLQLFKDYFVEE 260 (310)
Q Consensus 187 ~~~~fg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~----~~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 260 (310)
++++||.+.+..+.+. ...+........... ...++.|++. .++ .++.+... ...+.++.+++.+|++
T Consensus 188 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~I~~ 261 (500)
T PLN02169 188 SILMTGYDPMSLSIEMLEVEFGEAADIGEEAI-----YYRHFKPVILWRLQNWIGIGLERKMR-TALATVNRMFAKIISS 261 (500)
T ss_pred HhheeCCCccccCCCCCCCHHHHHHHHHHHHH-----HhHHhccHHHHHHHHHhCCchhhHHH-HHHHHHHHHHHHHHHH
Confidence 9999999775422110 011111111111110 0112223211 011 11111111 1234567788888888
Q ss_pred HHhhhhcccCCCcchhcHHHHHHhhhcC-----CCCCHHHHHHHHHHHhhccccC
Q 021610 261 RKKLASTKSMSNESLKCAIDHILDAQTK-----GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 261 r~~~~~~~~~~d~~~~~ll~~ll~~~~~-----~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
|++........++..+|+++.+++..++ ..+++++|.+++.++++||++|
T Consensus 262 r~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~i~~~~~~~l~AG~dT 316 (500)
T PLN02169 262 RRKEEISRAETEPYSKDALTYYMNVDTSKYKLLKPKKDKFIRDVIFSLVLAGRDT 316 (500)
T ss_pred HHHHhhccccccCCCcCHHHHHHhccccccccccCCChHHHHHHHHHHHHhchhH
Confidence 8752111100111235799999975321 2478999999999999999986
No 18
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.96 E-value=5.1e-28 Score=220.74 Aligned_cols=265 Identities=15% Similarity=0.281 Sum_probs=171.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCcccccccccCC----CcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHH
Q 021610 15 AAVVVAITVSKLRGKRFKLPPGPLPVPVFGNWLQVGD----DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEV 90 (310)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ppgP~~~pilGn~~~l~~----~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~ev 90 (310)
++++..++..+.+..+.++||||.++|++||++++.. +.++..+.+|+++||++|++++|++++|+++||++++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~i 92 (472)
T PLN02987 13 LAAIFFLLLRRTRYRRMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFI 92 (472)
T ss_pred HHHHHHHHHHhhccCCCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHH
Confidence 3344444455555556678999999999999988631 336778899999999999999999999999999999999
Q ss_pred HHhcCcccCCCCCcchhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHH-HHHHHHHHHHHHHhcCccccc
Q 021610 91 LHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRF-NWEDEAARVVEDVKKDPEAAT 169 (310)
Q Consensus 91 l~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~ 169 (310)
|.++...|+.++...... +.|+ +.++..+|+.|+++||++ ++.++.+.++.+.. .+.+.+...++.|.
T Consensus 93 l~~~~~~f~~~~~~~~~~-~lg~--~~l~~~~g~~wr~~R~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~------- 161 (472)
T PLN02987 93 LQNEGKLFECSYPGSISN-LLGK--HSLLLMKGNLHKKMHSLT-MSFANSSIIKDHLLLDIDRLIRFNLDSWS------- 161 (472)
T ss_pred HhCCCceEEecCcHHHHH-HhCc--ccccccCcHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHHHHHHHhhc-------
Confidence 999988887764322333 3332 235667899999999986 45445555555432 12333333444442
Q ss_pred CChhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHH
Q 021610 170 NGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERR 249 (310)
Q Consensus 170 ~~~~~~~~~~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~ 249 (310)
+.++....+...+++++++++||.+.....+.....+.. ....+ ..+++|++.+..+.. .+ ..+.
T Consensus 162 ~~v~~~~~~~~~t~~vi~~~~fg~~~~~~~~~~~~~~~~-------~~~~~---~~~~~p~l~~~~~~~----~~-~~~~ 226 (472)
T PLN02987 162 SRVLLMEEAKKITFELTVKQLMSFDPGEWTESLRKEYVL-------VIEGF---FSVPLPLFSTTYRRA----IQ-ARTK 226 (472)
T ss_pred cceehHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH-------HHhhh---hcCCCcCCCchHHHH----HH-HHHH
Confidence 124455667778889999999997653211111111111 11111 123456543222221 11 1234
Q ss_pred HhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 250 LQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 250 ~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+..++..+|++|++....+ ++...|+++.|++.. .++++++|.+++.++++||++|
T Consensus 227 ~~~~~~~~i~~r~~~~~~~---~~~~~d~l~~ll~~~--~~~~~~ei~~~~~~l~~Ag~~t 282 (472)
T PLN02987 227 VAEALTLVVMKRRKEEEEG---AEKKKDMLAALLASD--DGFSDEEIVDFLVALLVAGYET 282 (472)
T ss_pred HHHHHHHHHHHHHhhhhcc---CcccccHHHHHHhcC--CCCCHHHHHHHHHHHHHhccch
Confidence 5667778888876532111 122457999999763 2599999999999999999885
No 19
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.96 E-value=1.7e-27 Score=218.17 Aligned_cols=266 Identities=18% Similarity=0.312 Sum_probs=180.6
Q ss_pred CCCCCCCCCCCcccccccccCCC--cchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcc-h
Q 021610 30 RFKLPPGPLPVPVFGNWLQVGDD--LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-V 106 (310)
Q Consensus 30 ~~~~ppgP~~~pilGn~~~l~~~--~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~-~ 106 (310)
....||||+++|++||++++... .....+.++..+||++|+.|+|+.|+|+++||+.++++|.++...+..-+..+ .
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~ 112 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES 112 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence 34578999999999999987543 34567889999999999999999999999999999999976555554433323 5
Q ss_pred hhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHH
Q 021610 107 FDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNM 186 (310)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i 186 (310)
...+.|+| ++.+.|+.|+++||++ .|+|+.+.++++...+.+++..++..+..... ++.++..+.+.+++.++|
T Consensus 113 ~~~~lG~g---ll~~~g~~W~~~Rk~~-~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~vd~~~~~~~~tld~i 186 (497)
T KOG0157|consen 113 LKPWLGDG---LLFSDGEKWHKHRKLL-TPAFHFEILKSFVPVFIESSLILLLLLELAAS--GEEVDLQDLLKRLTLDII 186 (497)
T ss_pred HHHHhcCc---cccCCchHHHHHHhhc-cHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCeEcHHHHHHHHHHHHH
Confidence 55677655 5556699999999986 59999999999999999999998888876332 122777888899999999
Q ss_pred HHHHhcccc-CCCCchHHHHHHHHHHHhhhhhhcccccccccccccc-cchhh--HHHHHHHHHHHHHhHHHHHHHHHHH
Q 021610 187 YRIMFDRRF-ESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR-PFLRG--YLKICKEVKERRLQLFKDYFVEERK 262 (310)
Q Consensus 187 ~~~~fg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~-~~~~~--~~~~~~~~~~~~~~~~~~~~i~~r~ 262 (310)
|+++||... +.+..+....+.++......+..+ ...|+ + .++.. ..++.. ...+.++.+++.+|.+|+
T Consensus 187 ~~~~~G~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~~~~~~~~~~~~~~-~a~~~~~~~~~~iI~~rr 258 (497)
T KOG0157|consen 187 CKTAMGPESLDAEGPELFEYVQAFDDLTELISKR------INLPL-GTKFLYGLKSERKLK-KARKILHDFLEKIIRERR 258 (497)
T ss_pred HHHhcCCccccccCCcccHHHHHHHHHHHHHHHH------HcCch-hhhHHhhcchHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999322 112222222233332211112111 12231 1 11111 111221 233567788889999888
Q ss_pred hhhhcccCC-CcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 263 KLASTKSMS-NESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 263 ~~~~~~~~~-d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+....+... .....++++.+... .+..+|+++|++++.++++||.+|
T Consensus 259 ~~~~~~~~~~~~~~~d~L~~~~~~-~~~~l~~~~i~d~v~tf~faG~DT 306 (497)
T KOG0157|consen 259 EELEKEGSGEEKKRLDFLDTLLLE-EDKPLTDEDIRDEVDTFMFAGHDT 306 (497)
T ss_pred HHHHhcCCcccchhhhHHHHHHHh-ccCCCCHHHHHHHHHHheeeccch
Confidence 632211111 12356788863322 225799999999999999999886
No 20
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.96 E-value=2.8e-28 Score=222.02 Aligned_cols=269 Identities=28% Similarity=0.476 Sum_probs=188.8
Q ss_pred CCCCCCCcccccccccCC-CcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhh--
Q 021610 34 PPGPLPVPVFGNWLQVGD-DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIF-- 110 (310)
Q Consensus 34 ppgP~~~pilGn~~~l~~-~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~-- 110 (310)
||||+++|++||++++.. +.++..+.+|.++||++|++++|++++++|+||+++++++.+++..|+.++........
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~ 80 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG 80 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence 899999999999999874 34788899999999999999999999999999999999999988888877543333321
Q ss_pred cCCCceeEeccCChhHHHHHhhhcccCCChH-HHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHHH
Q 021610 111 TGKGQDMVFTVYGEHWRKMRRIMTVPFFTNK-VVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRI 189 (310)
Q Consensus 111 ~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~-~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 189 (310)
...+. .++..+|+.|+.+|+.+. +.|+.+ .+ .+.+.++++++++++.|.+..... +.++....+..+++++++++
T Consensus 81 ~~~~~-~l~~~~~~~~~~~R~~~~-~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~-~~vd~~~~~~~~~~d~i~~~ 156 (463)
T PF00067_consen 81 PFGGK-GLFFSDGERWRRQRRLLA-PAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSS-GPVDLFDWLRRFALDVIGRV 156 (463)
T ss_dssp HHTTT-SSTTSSHHHHHHHHHHHH-HHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSE-SEEEHHHHHHHHHHHHHHHH
T ss_pred ccccc-cccccccccccccccccc-ccccccccc-cccccccccccccccccccccccc-ceeeeecccccccccccccc
Confidence 11122 266777899999999875 777777 56 899999999999999999866432 24667778888899999999
Q ss_pred HhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccc
Q 021610 190 MFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKS 269 (310)
Q Consensus 190 ~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~ 269 (310)
+||.+++..+++....+.................+...+|+++.+.....+... ...+.+..+...+++++++.....
T Consensus 157 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~- 234 (463)
T PF00067_consen 157 LFGKDFGSLDDEDFEEFLEAFDELFELLSNFFWNLPFFFPWLKYLPTPLFRRFK-RARDRLRKYIKEIIEERREELDDG- 234 (463)
T ss_dssp HHSSHHHGTTHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTSSHHHHHHHH-HHHHHHHHHHHHHHHHHHHSHHSS-
T ss_pred cccceeeecccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc-
Confidence 999987744444322222222222112111111223455655433222222221 122445667778888887633221
Q ss_pred CCCcchhcHHHHHHhhh--cCC--CCCHHHHHHHHHHHhhccccC
Q 021610 270 MSNESLKCAIDHILDAQ--TKG--EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 270 ~~d~~~~~ll~~ll~~~--~~~--~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.....|+++.+++.. .++ .++++++...+.++++||++|
T Consensus 235 --~~~~~d~l~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~dt 277 (463)
T PF00067_consen 235 --DESRRDLLDSLLQASSDSDGPSGLSDEEIAAELLTLLFAGHDT 277 (463)
T ss_dssp --SSSCSSHHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHH
T ss_pred --ccccccccccccccccccccccccccccccccccccccccccc
Confidence 124567999999774 333 699999999999999999763
No 21
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.96 E-value=4e-27 Score=215.02 Aligned_cols=246 Identities=17% Similarity=0.227 Sum_probs=170.8
Q ss_pred CCCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchh
Q 021610 28 GKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF 107 (310)
Q Consensus 28 ~~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~ 107 (310)
.+..+.||||+++|++||++++..+.++..+.+++++||+++++++|++++|+++||+++++++.++...| ++.....
T Consensus 31 ~~~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~--~~~~~~~ 108 (463)
T PLN02196 31 STKLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLF--KPTFPAS 108 (463)
T ss_pred CCCCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcc--cccCchH
Confidence 34467899999999999998764444788999999999999999999999999999999999999887766 3322222
Q ss_pred -hhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHH
Q 021610 108 -DIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNM 186 (310)
Q Consensus 108 -~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i 186 (310)
....| ...++..+|+.|+++||++. +.|+++.++.+.+.++++++++++.|... .++..+.+..++++++
T Consensus 109 ~~~~~g--~~~l~~~~g~~w~~~Rk~l~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~~------~v~~~~~~~~~~~~v~ 179 (463)
T PLN02196 109 KERMLG--KQAIFFHQGDYHAKLRKLVL-RAFMPDAIRNMVPDIESIAQESLNSWEGT------QINTYQEMKTYTFNVA 179 (463)
T ss_pred HHHHcC--cccccccCcHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHcCCCC------eEEeHHHHHHHHHHHH
Confidence 22233 23467788999999999874 88999999999999999999999988532 2445566777888999
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccc--hhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021610 187 YRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPF--LRGYLKICKEVKERRLQLFKDYFVEERKKL 264 (310)
Q Consensus 187 ~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 264 (310)
+.++||.+.... .. .+...... +...+ +.+|+..|. .++ ..+ ..+.+..++..+|++|++.
T Consensus 180 ~~~~fG~~~~~~-~~---~~~~~~~~---~~~~~-----~~~~~~~p~~~~~~----~~~-a~~~~~~~~~~~i~~~~~~ 242 (463)
T PLN02196 180 LLSIFGKDEVLY-RE---DLKRCYYI---LEKGY-----NSMPINLPGTLFHK----SMK-ARKELAQILAKILSKRRQN 242 (463)
T ss_pred HHHHcCCCCchH-HH---HHHHHHHH---Hhcch-----hcccccCCCccchH----HHH-HHHHHHHHHHHHHHHHhhc
Confidence 999999864221 11 11111111 11100 122322221 111 111 1233456666777776551
Q ss_pred hhcccCCCcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 265 ASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 265 ~~~~~~~d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
. ....|+++.+++. ...+++++|.+++.++++||++|
T Consensus 243 --~-----~~~~d~l~~ll~~--~~~l~~~ei~~~~~~~~~Ag~dT 279 (463)
T PLN02196 243 --G-----SSHNDLLGSFMGD--KEGLTDEQIADNIIGVIFAARDT 279 (463)
T ss_pred --C-----CCcccHHHHHHhc--CCCCCHHHHHHHHHHHHHhhhHH
Confidence 1 1235699999863 23689999999999999999875
No 22
>PLN02774 brassinosteroid-6-oxidase
Probab=99.96 E-value=1.8e-27 Score=217.43 Aligned_cols=250 Identities=13% Similarity=0.178 Sum_probs=170.1
Q ss_pred CCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhh
Q 021610 29 KRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (310)
Q Consensus 29 ~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~ 108 (310)
++.++||||+++|++||++.+.++ ++..+.+|+++||++|++++|++++|+++||++++++|.+++..|..+.......
T Consensus 28 ~r~~~ppgp~~~P~~G~~~~~~~~-~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~ 106 (463)
T PLN02774 28 SKKGLPPGTMGWPLFGETTEFLKQ-GPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSMLD 106 (463)
T ss_pred CCCCCCCCCCCCCchhhHHHHHHh-hHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHHH
Confidence 344689999999999999877544 5678899999999999999999999999999999999998877775432222222
Q ss_pred hhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHH-hHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHH
Q 021610 109 IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ-QRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMY 187 (310)
Q Consensus 109 ~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ 187 (310)
+.++ +.+++.+|+.|+++|+++ .++|+++.++. +.+.+++.++++++.|... +.++....+...++++++
T Consensus 107 -~lg~--~~~~~~~g~~w~~~R~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~ 177 (463)
T PLN02774 107 -ILGT--CNIAAVHGSTHRYMRGSL-LSLISPTMIRDHLLPKIDEFMRSHLSGWDGL-----KTIDIQEKTKEMALLSAL 177 (463)
T ss_pred -HhCc--cchhhcCCHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHhhCCC-----CCEEeeHHHHHHHHHHHH
Confidence 3332 235667899999999987 58999998886 7888999999999888532 234555566677878899
Q ss_pred HHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Q 021610 188 RIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLAST 267 (310)
Q Consensus 188 ~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~ 267 (310)
+++||.+.+.. ...+. ..+..+... ......++|. +..+. ..+ ..+.+..++...|++|++. +
T Consensus 178 ~~~~g~~~~~~----~~~~~---~~~~~~~~~-~~~~~~~lp~--~~~~~----~~~-~~~~~~~~~~~~i~~r~~~--~ 240 (463)
T PLN02774 178 KQIAGTLSKPI----SEEFK---TEFFKLVLG-TLSLPIDLPG--TNYRS----GVQ-ARKNIVRMLRQLIQERRAS--G 240 (463)
T ss_pred HHHcCCCChHH----HHHHH---HHHHHHhcc-cccCCcCCCC--hhhhH----HHH-HHHHHHHHHHHHHHHHHhc--C
Confidence 99999754321 11111 111111110 0111122232 11111 111 2244566677777777652 1
Q ss_pred ccCCCcchhcHHHHHHhhhcCC-CCCHHHHHHHHHHHhhccccC
Q 021610 268 KSMSNESLKCAIDHILDAQTKG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 268 ~~~~d~~~~~ll~~ll~~~~~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+.++|+++.|++...++ .+++++|..++.++++||++|
T Consensus 241 -----~~~~d~l~~ll~~~~~~~~~s~~ei~~~~~~ll~Ag~dT 279 (463)
T PLN02774 241 -----ETHTDMLGYLMRKEGNRYKLTDEEIIDQIITILYSGYET 279 (463)
T ss_pred -----CCcccHHHHHHhCccCCCCCCHHHHHHHHHHHHHhcchh
Confidence 12357999999744332 589999999999999999875
No 23
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.95 E-value=5.7e-26 Score=209.33 Aligned_cols=257 Identities=18% Similarity=0.258 Sum_probs=170.7
Q ss_pred cCCCCCCCCCCCCCcccccccccC----CCcchHHHHHHHHhhCC--eEEEEecCeeEEEEcCHHHHHHHHHhcCcccCC
Q 021610 27 RGKRFKLPPGPLPVPVFGNWLQVG----DDLNHRNLSDLAKKYGD--VLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGS 100 (310)
Q Consensus 27 ~~~~~~~ppgP~~~pilGn~~~l~----~~~~~~~~~~~~~~yG~--v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~ 100 (310)
..+..++||||+++|++||++++. ...++..+.++.++||+ +|++++|+.++|+++||+++++++.++ +.|.+
T Consensus 37 ~~~~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~ 115 (490)
T PLN02302 37 GEGQPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEP 115 (490)
T ss_pred ccCCCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-Ccccc
Confidence 344567899999999999998763 22367889999999997 799999999999999999999999876 45654
Q ss_pred CCCcchhhhhcCCCceeEeccCChhHHHHHhhhcccCC-ChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH
Q 021610 101 RTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFF-TNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ 179 (310)
Q Consensus 101 R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f-~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 179 (310)
+....... ..+. ..++..+|+.|+++||++. +.| +++.++.+.+.++++++++++.|.+. +.++....+.
T Consensus 116 ~~~~~~~~-~~g~--~~~~~~~g~~w~~~R~~~~-~~f~~~~~l~~~~~~i~~~v~~~~~~~~~~-----~~v~~~~~~~ 186 (490)
T PLN02302 116 GWPESTVE-LIGR--KSFVGITGEEHKRLRRLTA-APVNGPEALSTYIPYIEENVKSCLEKWSKM-----GEIEFLTELR 186 (490)
T ss_pred CCchhHHH-Hhcc--ccccccCcHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHhcCC-----CCEehHHHHH
Confidence 42222223 2332 2355678999999999875 666 57889999999999999999998642 2356666777
Q ss_pred HHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHH
Q 021610 180 LMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVE 259 (310)
Q Consensus 180 ~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 259 (310)
..+++++++++||.+.....+ .+... ...+..... .....+|... .. +.. + ..+.+..++...++
T Consensus 187 ~~~~~vi~~~~~G~~~~~~~~----~~~~~---~~~~~~~~~-~~~~~~p~~~--~~---~~~-~-~~~~l~~~~~~~i~ 251 (490)
T PLN02302 187 KLTFKIIMYIFLSSESELVME----ALERE---YTTLNYGVR-AMAINLPGFA--YH---RAL-K-ARKKLVALFQSIVD 251 (490)
T ss_pred HHHHHHHHHHHcCCCChHHHH----HHHHH---HHHHHHHhh-hCCcCCCchh--hH---HHH-H-HHHHHHHHHHHHHH
Confidence 788899999999986532111 11110 000100000 0001122211 11 111 1 12335566777777
Q ss_pred HHHhhhhcccCCCcchhcHHHHHHhhhc-CC-CCCHHHHHHHHHHHhhccccC
Q 021610 260 ERKKLASTKSMSNESLKCAIDHILDAQT-KG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 260 ~r~~~~~~~~~~d~~~~~ll~~ll~~~~-~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+|++....+ ......|+++.|++..+ ++ .+++++|...+.++++||++|
T Consensus 252 ~~~~~~~~~--~~~~~~d~l~~ll~~~~~~~~~~~~~~i~~~~~~~~~Ag~dt 302 (490)
T PLN02302 252 ERRNSRKQN--ISPRKKDMLDLLLDAEDENGRKLDDEEIIDLLLMYLNAGHES 302 (490)
T ss_pred HHHHhhhcc--CCCCcCCHHHHHHhhhccCCCCCCHHHHHHHHHHHHHhhHHH
Confidence 776521111 11134679999997643 23 589999999999999999875
No 24
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.95 E-value=1.9e-26 Score=210.09 Aligned_cols=258 Identities=15% Similarity=0.217 Sum_probs=170.3
Q ss_pred CCCCCCCCCCCCCcccccccccCC----CcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCC
Q 021610 28 GKRFKLPPGPLPVPVFGNWLQVGD----DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR 103 (310)
Q Consensus 28 ~~~~~~ppgP~~~pilGn~~~l~~----~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~ 103 (310)
+++.++||||.++|++||++++.. +.++..+.+|+++||++|++++|+.++||++||++++++|.+++..|++|..
T Consensus 3 ~~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~ 82 (452)
T PLN03141 3 KKKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYP 82 (452)
T ss_pred CCCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCc
Confidence 345568999999999999988732 2377889999999999999999999999999999999999999888887643
Q ss_pred cchhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHH-hHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHH
Q 021610 104 NVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ-QRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMM 182 (310)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 182 (310)
. ....+.|+ +.++..+|+.||++|+++. +.|+...+.. ..+.+.+.++++++.|.. ++.++....+..++
T Consensus 83 ~-~~~~l~g~--~~~~~~~g~~wr~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 153 (452)
T PLN03141 83 K-SLTELMGK--SSILLINGSLQRRVHGLIG-AFLKSPHLKAQITRDMERYVSESLDSWRD-----DPPVLVQDETKKIA 153 (452)
T ss_pred h-hHHHHhCc--ccccccCcHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHhccC-----CCCEEhHHHHHHHH
Confidence 2 33334442 2466778999999999874 7787766665 345666666666666532 12355566777888
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021610 183 YNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERK 262 (310)
Q Consensus 183 ~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~ 262 (310)
++++++++||.+... ....+..... .+..... ....++|... ++ +.. ...+.+..++..+|++|+
T Consensus 154 ~~vi~~~~~G~~~~~----~~~~~~~~~~---~~~~~~~-~~~~~~p~~~--~~---~~~--~~~~~l~~~~~~~i~~~~ 218 (452)
T PLN03141 154 FEVLVKALISLEPGE----EMEFLKKEFQ---EFIKGLM-SLPIKLPGTR--LY---RSL--QAKKRMVKLVKKIIEEKR 218 (452)
T ss_pred HHHHHHHHcCCCchH----HHHHHHHHHH---HHhhhHH-hCccCCCchH--hH---HHH--HHHHHHHHHHHHHHHHHH
Confidence 899999999975432 1111111111 1111000 0111223211 11 111 112445667778887776
Q ss_pred hhhhccc-CCCcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 263 KLASTKS-MSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 263 ~~~~~~~-~~d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
...+.+. ..++.+.|+++.++++. +..+++++|..++.++++||++|
T Consensus 219 ~~~~~~~~~~~~~~~d~l~~ll~~~-~~~l~~~~i~~~~~~ll~Ag~dT 266 (452)
T PLN03141 219 RAMKNKEEDETGIPKDVVDVLLRDG-SDELTDDLISDNMIDMMIPGEDS 266 (452)
T ss_pred HHHhccCccccCChhhHHHHHHhcC-CCCCCHHHHHHHHHHHHHhcchh
Confidence 5221110 00012467999999753 34689999999999999999875
No 25
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.95 E-value=5.2e-26 Score=210.58 Aligned_cols=265 Identities=16% Similarity=0.231 Sum_probs=167.5
Q ss_pred CCCCCCCcccccccccCCCcchHHHHHHHHhh---CCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcc-hhhh
Q 021610 34 PPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKY---GDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-VFDI 109 (310)
Q Consensus 34 ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~y---G~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~-~~~~ 109 (310)
+|||+++|++||++++.. .+..+.+|.++| |++|++++|+.++|+++||+++++++.++...|..++... ....
T Consensus 32 ~pgp~~~p~~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~ 109 (516)
T PLN03195 32 RKGPKSWPIIGAALEQLK--NYDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYMEV 109 (516)
T ss_pred cCCCCCCCeecchHHHHh--ccchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHHH
Confidence 699999999999876543 245577888888 8999999999999999999999999987755665543211 1222
Q ss_pred hcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHH-HHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHH
Q 021610 110 FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNW-EDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYR 188 (310)
Q Consensus 110 ~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (310)
+.+++ +++.+|+.|+++||++ ++.|+.+.++.+.+.+ .+.++.+++.+.+.... +..++....+..+++++|++
T Consensus 110 ~~g~~---l~~~~g~~w~~~Rr~l-~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~-~~~vd~~~~~~~~~~dvi~~ 184 (516)
T PLN03195 110 LLGDG---IFNVDGELWRKQRKTA-SFEFASKNLRDFSTVVFREYSLKLSSILSQASFA-NQVVDMQDLFMRMTLDSICK 184 (516)
T ss_pred HhcCe---eeccCcHHHHHHHHhc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCeEcHHHHHHHHHHHHHHH
Confidence 33433 6778999999999987 5889999999998876 55577777777642211 23466677788888899999
Q ss_pred HHhccccCCCCch--HHHHHHHHHHHhhhhhhcccccccccccccccch-hhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 021610 189 IMFDRRFESQDDP--LFNRLKALNGERSRLAQSFEYNYGDFIPILRPFL-RGYLKICKEVKERRLQLFKDYFVEERKKLA 265 (310)
Q Consensus 189 ~~fg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~ 265 (310)
++||.+++..++. .......+.... .... . ...+.++.+..+. ....+.... ..+.+..+...+++++++..
T Consensus 185 ~~fG~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~ 259 (516)
T PLN03195 185 VGFGVEIGTLSPSLPENPFAQAFDTAN-IIVT-L--RFIDPLWKLKKFLNIGSEALLSK-SIKVVDDFTYSVIRRRKAEM 259 (516)
T ss_pred HHhCCCccccccCCCccHHHHHHHHHH-HHHH-H--HHhcchhhHHHhcccchHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999987643211 000111111110 0000 0 0001111111111 000111111 12345566777777766421
Q ss_pred hccc-CCCcchhcHHHHHHhhhcC--CCCCHHHHHHHHHHHhhccccC
Q 021610 266 STKS-MSNESLKCAIDHILDAQTK--GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 266 ~~~~-~~d~~~~~ll~~ll~~~~~--~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.... ..+....|+++.|+++.++ ..++++++.+++.++++||++|
T Consensus 260 ~~~~~~~~~~~~d~l~~ll~~~~~~~~~l~~~~i~~~~~~ll~AG~dT 307 (516)
T PLN03195 260 DEARKSGKKVKHDILSRFIELGEDPDSNFTDKSLRDIVLNFVIAGRDT 307 (516)
T ss_pred hccccccccccccHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhhHh
Confidence 1110 0112346799999975432 3599999999999999999886
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=99.93 E-value=2.7e-24 Score=197.65 Aligned_cols=262 Identities=20% Similarity=0.247 Sum_probs=175.7
Q ss_pred CCCCCCCCcccccccccCC----CcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhh
Q 021610 33 LPPGPLPVPVFGNWLQVGD----DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (310)
Q Consensus 33 ~ppgP~~~pilGn~~~l~~----~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~ 108 (310)
+..|-.|||++|+.++... ..++..+.+|+++||++|++++|+.++|+++|||++++|+.+.+..|+.++......
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~ 92 (489)
T PLN02936 13 LWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSE 92 (489)
T ss_pred cCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhH
Confidence 5678899999998776522 236788999999999999999999999999999999999988778888775332223
Q ss_pred hhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHH-HHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHH
Q 021610 109 IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRF-NWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMY 187 (310)
Q Consensus 109 ~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ 187 (310)
.+.+.+ ++..+|+.|+++||++ ++.|+.+.+.++.+ ++.++++++++.|.+.... +..++....+..+++++|+
T Consensus 93 ~~~~~~---i~~~~g~~wk~~Rk~l-~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~-g~~vd~~~~~~~~~~dvi~ 167 (489)
T PLN02936 93 FLFGSG---FAIAEGELWTARRRAV-VPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALS-GEAVNMEAKFSQLTLDVIG 167 (489)
T ss_pred HHhcCc---cccCCchHHHHHHHhh-cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCceeHHHHHHHHHHHHHH
Confidence 333333 6668899999999987 58999888888755 7889999999999864322 2356777788888889999
Q ss_pred HHHhccccCCCCc--hHHHHHHHHHHHhhhhhhcccccccccccccc-c----chhhHHHHHHHHHHHHHhHHHHHHHHH
Q 021610 188 RIMFDRRFESQDD--PLFNRLKALNGERSRLAQSFEYNYGDFIPILR-P----FLRGYLKICKEVKERRLQLFKDYFVEE 260 (310)
Q Consensus 188 ~~~fg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~-~----~~~~~~~~~~~~~~~~~~~~~~~~i~~ 260 (310)
.++||.+++.... +....+...... ... ...+++|++. + +... .+... ...+.+..++..++++
T Consensus 168 ~~~fG~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~p~~~~~~l~~~~p~-~~~~~-~~~~~i~~~~~~~i~~ 238 (489)
T PLN02936 168 LSVFNYNFDSLTTDSPVIQAVYTALKE---AET----RSTDLLPYWKVDFLCKISPR-QIKAE-KAVTVIRETVEDLVDK 238 (489)
T ss_pred HHHcCCCccccccCcHHHHHHHHHHHH---HHH----hhhccchHHhhHHHhccChh-hHHHH-HHHHHHHHHHHHHHHH
Confidence 9999998875322 222222211111 100 1112334322 1 1111 11111 1123445566677766
Q ss_pred HHhhhhcc--cC--C---CcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 261 RKKLASTK--SM--S---NESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 261 r~~~~~~~--~~--~---d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+++..+.. .. . +....++++.|++.. ..+++++|.+++.++++||++|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~--~~~~~~~i~~~~~~~~~aG~dT 293 (489)
T PLN02936 239 CKEIVEAEGEVIEGEEYVNDSDPSVLRFLLASR--EEVSSVQLRDDLLSMLVAGHET 293 (489)
T ss_pred HHHHHhhcccccccccccccCchHHHHHHHhcc--ccCCHHHHHHHHHHHHHHhHHH
Confidence 55321110 00 0 123467999999753 2489999999999999999875
No 27
>PLN02738 carotene beta-ring hydroxylase
Probab=99.92 E-value=6.1e-23 Score=192.45 Aligned_cols=257 Identities=17% Similarity=0.242 Sum_probs=163.8
Q ss_pred cccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcCCCceeEeccC
Q 021610 43 FGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVY 122 (310)
Q Consensus 43 lGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~ 122 (310)
+||+..+...+.+..+.+|.++|||||++++|+.++|+|+||+.+++++.+++..|+.++.........+. .+++.+
T Consensus 142 ~G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~~g~---~l~~~d 218 (633)
T PLN02738 142 KGSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVMGK---GLIPAD 218 (633)
T ss_pred cCcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhccCC---ceecCC
Confidence 56665554444567899999999999999999999999999999999999887778776432222222332 266788
Q ss_pred ChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHHHHhccccCCCC--c
Q 021610 123 GEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQD--D 200 (310)
Q Consensus 123 g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fg~~~~~~~--~ 200 (310)
|+.|+.+|+.+ .+.|+.+.++.+.+.+.++++++++.|.+.... +..++....+..+++++|+.++||.+++... +
T Consensus 219 ge~wr~rRr~l-~p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~-g~~vdl~~~~~~lt~DVI~~~~FG~~~~~~~~~~ 296 (633)
T PLN02738 219 GEIWRVRRRAI-VPALHQKYVAAMISLFGQASDRLCQKLDAAASD-GEDVEMESLFSRLTLDIIGKAVFNYDFDSLSNDT 296 (633)
T ss_pred cHHHHHHHHhc-cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcEeHHHHHHHHHHHHHHHHHhCCCccccccch
Confidence 99999999987 599999999999999999999999999764322 2346666778888889999999999886422 2
Q ss_pred hHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc------ccCCCcc
Q 021610 201 PLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLAST------KSMSNES 274 (310)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~------~~~~d~~ 274 (310)
.....+......... ..........+|+++.+... .+..... .+.+..+.+.+++.+++..+. ....+..
T Consensus 297 ~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~l~~~-~~~~~~~-~~~l~~~~~~li~~~~~~~~~~~~~~~~~~~~~~ 372 (633)
T PLN02738 297 GIVEAVYTVLREAED--RSVSPIPVWEIPIWKDISPR-QRKVAEA-LKLINDTLDDLIAICKRMVEEEELQFHEEYMNER 372 (633)
T ss_pred HHHHHHHHHHHHHHH--HhhcchhhhhhhHHhhhchH-HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccchhcccccc
Confidence 222222221111110 00000011122333211111 1111111 122334444444433321100 0000112
Q ss_pred hhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 275 LKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 275 ~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
..++++.|++.. ..+++++|.+++.++++||++|
T Consensus 373 ~~dil~~Ll~~~--~~ls~~~L~~e~~~ll~AG~eT 406 (633)
T PLN02738 373 DPSILHFLLASG--DDVSSKQLRDDLMTMLIAGHET 406 (633)
T ss_pred cchHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCcc
Confidence 357999999753 3589999999999999999986
No 28
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=3.5e-22 Score=175.62 Aligned_cols=264 Identities=16% Similarity=0.282 Sum_probs=176.8
Q ss_pred CCCCCCCCCCCcccccccccC---CCcchHHHHHHHHhhCCeEEEE-ecCeeEEEEcCHHHHHHHHHhcCcccCCCC-Cc
Q 021610 30 RFKLPPGPLPVPVFGNWLQVG---DDLNHRNLSDLAKKYGDVLLLR-MGQRNLVVVSSPDHAKEVLHTQGVEFGSRT-RN 104 (310)
Q Consensus 30 ~~~~ppgP~~~pilGn~~~l~---~~~~~~~~~~~~~~yG~v~~~~-~g~~~~vvi~~pe~i~evl~~~~~~f~~R~-~~ 104 (310)
+...+|||+++|++|++..+. -.+.|+......++||+||+.. +|+...|.+.||++++.++..++. ++-|| ..
T Consensus 48 ~~~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG~-~P~Rp~~~ 126 (519)
T KOG0159|consen 48 PFEEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEGK-YPFRPLLI 126 (519)
T ss_pred ChhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCCC-CCCccccc
Confidence 445679999999999998532 2336778888999999999999 899999999999999999988774 57776 22
Q ss_pred c---hhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCccc--ccCChhHHHHHH
Q 021610 105 V---VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEA--ATNGIVLRRRLQ 179 (310)
Q Consensus 105 ~---~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~~~~~~~~~ 179 (310)
+ ..+.+.+ +...++..+|++|++.|..+.+.+++++.++.|.+.+++.++++++.+....+. .....+....+.
T Consensus 127 ~~w~~~rd~~~-~~~Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~ 205 (519)
T KOG0159|consen 127 EPWVAYRDFRG-GVCGLFLLEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELY 205 (519)
T ss_pred chhhhhHHhhc-cCCCcccCCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence 2 2233333 233478899999999999998888999999999999999999999999865431 112345566788
Q ss_pred HHHHHHHHHHHhccccCCCC---chHHHHH-HHHHHHhhhhhhccccccccccc-ccc----cchhhHHHHHHHHHHHHH
Q 021610 180 LMMYNNMYRIMFDRRFESQD---DPLFNRL-KALNGERSRLAQSFEYNYGDFIP-ILR----PFLRGYLKICKEVKERRL 250 (310)
Q Consensus 180 ~~~~~~i~~~~fg~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~P-~l~----~~~~~~~~~~~~~~~~~~ 250 (310)
++.+..||.++||.++.... +++...+ .++.. +.... ...++.| +++ +.++.+.+..+ .+
T Consensus 206 ~wslEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~----~F~~s--~~l~~~p~l~r~~~t~~wk~~~~~~D-----~i 274 (519)
T KOG0159|consen 206 RWSLESICLVLLGTRLGLLGESPPSEAQQFIDAIKK----MFESS--AQLMLMPSLWRYFPTKVWKDFVRAWD-----QI 274 (519)
T ss_pred HHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHH----HHHhH--HHHHhcchHHHhCCChHHHHHHHHHH-----HH
Confidence 88889999999999986432 2222222 22222 22211 1113333 333 33444333332 23
Q ss_pred hHHHHHHHHHHHhhhhcccCC-CcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 251 QLFKDYFVEERKKLASTKSMS-NESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 251 ~~~~~~~i~~r~~~~~~~~~~-d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
..+.+.+|+++.+..+..... .+...++++.|.+ ..++.+++...++||++||++|
T Consensus 275 ~~~~~~~Id~~l~~l~~~~~~~~~~~~~l~~~L~~----~~l~~k~~~~~~~dll~aGvDT 331 (519)
T KOG0159|consen 275 FDVGDKYIDNALEELEKQDSAGSEYTGSLLELLLR----KELSRKDAKANVMDLLAAGVDT 331 (519)
T ss_pred HHHHHHHHHHHHHHHHhccccccchhHHHHHHHHH----ccCCHHHHHHHHHHHHHHhccc
Confidence 344555665554322111110 0112345555554 3688999999999999999876
No 29
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.82 E-value=2.6e-18 Score=158.23 Aligned_cols=250 Identities=14% Similarity=0.210 Sum_probs=156.0
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhC-CeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCC-cchhhhhcCCCce
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR-NVVFDIFTGKGQD 116 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG-~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~-~~~~~~~~~~~~~ 116 (310)
..++.|+......+ .+.+...+.++++ .+++++..+. |+++||+.+++++.++...|+..+. ......+.|+|
T Consensus 48 ~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~g~g-- 122 (502)
T PLN02426 48 RAYLTASWAKDFDN-LCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLLGRG-- 122 (502)
T ss_pred CCCccHHHHHhccc-HHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhcCCc--
Confidence 45678888653333 4666767888887 5777776443 8999999999999988777865432 12223344444
Q ss_pred eEeccCChhHHHHHhhhcccCCChHHHHHhH--HHHHHHHHHHHHHHhcCcccc-cCChhHHHHHHHHHHHHHHHHHhcc
Q 021610 117 MVFTVYGEHWRKMRRIMTVPFFTNKVVQQQR--FNWEDEAARVVEDVKKDPEAA-TNGIVLRRRLQLMMYNNMYRIMFDR 193 (310)
Q Consensus 117 ~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~fg~ 193 (310)
+++.+|+.|+++||++ .+.|+.+.++.+. +.+++.++.+++.|.+..+.. +..++..+.+.++++++|++++||.
T Consensus 123 -i~~~~g~~wk~~Rk~l-~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~ 200 (502)
T PLN02426 123 -IFNVDGDSWRFQRKMA-SLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGL 200 (502)
T ss_pred -eeecCcHHHHHHHHHh-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCC
Confidence 6788999999999987 5899999888874 577777888888886532111 1246677778888999999999999
Q ss_pred ccCCCCc--hHHHHHHHHHHHhhhhhhcccccccccccccc---cch-hhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Q 021610 194 RFESQDD--PLFNRLKALNGERSRLAQSFEYNYGDFIPILR---PFL-RGYLKICKEVKERRLQLFKDYFVEERKKLAST 267 (310)
Q Consensus 194 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~---~~~-~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~ 267 (310)
+++..+. +.......+.. ....... .....+|++. .++ .+..+... ...+.++.+...+|++|++.. .
T Consensus 201 ~~~~l~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~I~~r~~~~-~ 274 (502)
T PLN02426 201 DPGCLELSLPISEFADAFDT-ASKLSAE---RAMAASPLLWKIKRLLNIGSERKLK-EAIKLVDELAAEVIRQRRKLG-F 274 (502)
T ss_pred CCcccCCCCCccHHHHHHHH-HHHHHHH---HHhcchhHHHHHHHhcccchhHHHH-HHHHHHHHHHHHHHHHHHhcc-c
Confidence 8754321 11111111111 1111000 0001122211 111 01111111 123456677888888877521 1
Q ss_pred ccCCCcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 268 KSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 268 ~~~~d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+...|+++.+++.. .+++++.+++.++++||++|
T Consensus 275 -----~~~~dll~~ll~~~----~~~~~l~~~~~~~l~AG~dT 308 (502)
T PLN02426 275 -----SASKDLLSRFMASI----NDDKYLRDIVVSFLLAGRDT 308 (502)
T ss_pred -----CCcchHHHHHHhcC----CCHHHHHHHHHHHHHhccch
Confidence 12356999999752 37889999999999999986
No 30
>PLN02648 allene oxide synthase
Probab=99.69 E-value=2.8e-17 Score=149.77 Aligned_cols=162 Identities=11% Similarity=0.133 Sum_probs=122.4
Q ss_pred CCCCCCCCCCCcccccccccCC----CcchHHHHHHHHhhCC-eEEEEecCeeE-------EEEcCHHHHHHHHHh----
Q 021610 30 RFKLPPGPLPVPVFGNWLQVGD----DLNHRNLSDLAKKYGD-VLLLRMGQRNL-------VVVSSPDHAKEVLHT---- 93 (310)
Q Consensus 30 ~~~~ppgP~~~pilGn~~~l~~----~~~~~~~~~~~~~yG~-v~~~~~g~~~~-------vvi~~pe~i~evl~~---- 93 (310)
+.+.|||+.|||++|++.++.+ ..+..++.+..++||+ ||++++++.|+ |+++|||.++.+|..
T Consensus 15 ~~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~ 94 (480)
T PLN02648 15 PLREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVD 94 (480)
T ss_pred CCCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhcc
Confidence 4567999999999999986543 1245788899999999 99999988666 999999999999974
Q ss_pred cCcccCCCCCcchhhhhcCCC-ceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCCh
Q 021610 94 QGVEFGSRTRNVVFDIFTGKG-QDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGI 172 (310)
Q Consensus 94 ~~~~f~~R~~~~~~~~~~~~~-~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 172 (310)
+...|...-. .... +.|.+ ..+++..+|+.|+++||++ .+.|+. .++.|.+.+++.+.++++.|.+.... ++.+
T Consensus 95 ~~~~~~~~~~-~~~~-l~G~~~~~s~~~~~g~~H~r~Rrll-~~~f~~-~~~~~~~~m~~~~~~~~~~w~~~~~~-~~~v 169 (480)
T PLN02648 95 KRDVFTGTYM-PSTA-FTGGYRVLSYLDPSEPKHAKLKSFL-FELLKS-RHRRFIPEFRAAFAELFDTWEAELAK-KGKA 169 (480)
T ss_pred ccccceeeec-cCcc-ccCCceeeeecCCCCchHHHHHHHH-HHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHhh-CCCc
Confidence 4444443211 2233 44421 1256778899999999987 488985 66889999999999999999643111 2246
Q ss_pred hHHHHHHHHHHHHHHHHHhccccC
Q 021610 173 VLRRRLQLMMYNNMYRIMFDRRFE 196 (310)
Q Consensus 173 ~~~~~~~~~~~~~i~~~~fg~~~~ 196 (310)
+........+.+++++++||.+.+
T Consensus 170 dv~~~~~~lt~~vi~~~lfG~~~~ 193 (480)
T PLN02648 170 EFNDPLDQMAFNFLCKALTGKDPS 193 (480)
T ss_pred cccchHHHHHHHHHHHHHcCCCcc
Confidence 666778888889999999998654
No 31
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=2e-14 Score=124.35 Aligned_cols=248 Identities=15% Similarity=0.183 Sum_probs=156.9
Q ss_pred CCCCCCCC-CcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhh
Q 021610 32 KLPPGPLP-VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIF 110 (310)
Q Consensus 32 ~~ppgP~~-~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~ 110 (310)
+.||--.+ .|++|.+..++++ |.+.+.+.++||||||++.++|+.+=++.+|+....+|...-...+-+. .+..+
T Consensus 31 ~~PPli~gwiP~lG~a~~fgk~-P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~---~~~~l 106 (486)
T KOG0684|consen 31 KEPPLIKGWIPWLGSALAFGKD-PLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEE---AYSKL 106 (486)
T ss_pred CCCcccccCcchhhHHHHhccC-HHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHH---HHHHh
Confidence 46776665 5899999999877 8999999999999999999999999999999999999976533333221 12122
Q ss_pred cC--CCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHH-HhcCcccccCChhHHHHHHHHHH-HHH
Q 021610 111 TG--KGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVED-VKKDPEAATNGIVLRRRLQLMMY-NNM 186 (310)
Q Consensus 111 ~~--~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~-l~~~~~~~~~~~~~~~~~~~~~~-~~i 186 (310)
.. -|++++.-.++....++.+++ ...++...++++.+.|.++..+.++. |.+. ...+....+...++ ...
T Consensus 107 ~~~vFg~~v~~d~~~~~~~e~~~~~-k~~L~~~~lk~~~e~m~~el~~~f~~~~~~s-----~~~d~l~~~~~~ii~tAs 180 (486)
T KOG0684|consen 107 TTPVFGKGVVYDVPNHVMMEQKKFF-KSALGGVALKSLVELMLEELHAYFETSLGES-----GETDGLYTFCRLIIFTAS 180 (486)
T ss_pred hhhhcCCCccccCCCchHHHHHHHH-HHHhchhhHHHHHHHHHHHHHHHHhcccccc-----cchhHhhhhhHHHhhhhH
Confidence 11 144566667778888888876 47788889999999999999998887 4431 12333333322222 333
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccc-cc-cchhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021610 187 YRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPI-LR-PFLRGYLKICKEVKERRLQLFKDYFVEERKKL 264 (310)
Q Consensus 187 ~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~-l~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 264 (310)
..+.||...+..++.....+..+++.+. ++...||. |= +..+.+. .+++.+.+.+...|.+|++.
T Consensus 181 ~~ll~~e~r~~~d~~~a~l~~dLd~~F~--------~~d~~FP~~LP~~~~r~~~-----ra~~~i~k~f~~~i~~rr~s 247 (486)
T KOG0684|consen 181 RLLLGGEVRDQLDADVAKLYHDLDQGFQ--------PFDFLFPYNLPIPLLRRRD-----RARKKISKIFSKIILDRRAS 247 (486)
T ss_pred HHhhhhhhhhhhcchHHHHHHHHhcccc--------chHhhcccCCCcchhhhHH-----HHHHHHHHHHHHHHHHHHhc
Confidence 3444554433322111111222222211 12234562 21 3333321 12344566677778777773
Q ss_pred hhcccCCCcchhcHHHHHHhhhcCC-CCCHHHHHHHHHHHhhccc
Q 021610 265 ASTKSMSNESLKCAIDHILDAQTKG-EINEDNVLYIVENINVAGM 308 (310)
Q Consensus 265 ~~~~~~~d~~~~~ll~~ll~~~~~~-~~~~e~i~~~~~~l~~aG~ 308 (310)
.+ +...|+++.+++..+++ +.|++++......++.||.
T Consensus 248 ~s------~~~~dmlq~l~~~y~dg~~~te~e~a~~li~~LwA~Q 286 (486)
T KOG0684|consen 248 IS------KWDNDMLQSLMEKYKDGRPTTEEEIAGLLIGLLWAGQ 286 (486)
T ss_pred cc------cccHHHHHHHHHHhhcCCcCcHHHHHHHHHHHHHhcc
Confidence 21 12245888888743444 7899999999999999885
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.64 E-value=1.8e-14 Score=129.52 Aligned_cols=218 Identities=21% Similarity=0.299 Sum_probs=142.6
Q ss_pred HHHHHHHHhhCCeEEEEecCee--EEEEcCHHHHHHHHHhcCcccCCCCCcch----hhhhcCCCceeEeccCChhHHHH
Q 021610 56 RNLSDLAKKYGDVLLLRMGQRN--LVVVSSPDHAKEVLHTQGVEFGSRTRNVV----FDIFTGKGQDMVFTVYGEHWRKM 129 (310)
Q Consensus 56 ~~~~~~~~~yG~v~~~~~g~~~--~vvi~~pe~i~evl~~~~~~f~~R~~~~~----~~~~~~~~~~~~~~~~g~~W~~~ 129 (310)
.....+.+.||.+++++..+.- .+++++++.+++++.++. .++++..... ..... +..+++..+|+.|+++
T Consensus 26 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~ll~~dg~~H~r~ 102 (411)
T COG2124 26 FFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVL--GDGSLLTLDGPEHTRL 102 (411)
T ss_pred hhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhc--cccceeecCCHHHHHH
Confidence 3456677889999988875543 899999999999998764 2222221111 12223 3334778999999999
Q ss_pred HhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Q 021610 130 RRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKAL 209 (310)
Q Consensus 130 Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~ 209 (310)
||++ ++.|+++.++.|.+.+.+.+.++++.+ ... ...++.......++.+|| .+||.+.+.. +.. ....
T Consensus 103 Rkl~-~~~F~~~~~~~~~~~i~~~~~~~~~~~-~~~----~~~~v~~~a~~l~~~vi~-~l~Gv~~~~~--~~~--~~~~ 171 (411)
T COG2124 103 RKLL-APAFTPRALRGYRPLIREIADRLLDDL-WQG----GADLVLDFAAELTLRVIA-ELLGVPLEDR--PQL--LRWS 171 (411)
T ss_pred HHHh-ccccCHHHHHHHHHHHHHHHHHHHHhc-ccC----CchhHHHHhhhhhHHHHH-HHhCCCHHHH--HHH--HHHH
Confidence 9987 599999999999999999999999998 322 223344445566778899 9999865431 111 1111
Q ss_pred HHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcCC
Q 021610 210 NGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKG 289 (310)
Q Consensus 210 ~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~ 289 (310)
... +.. .+ |...+... +.+ . ....+.+..++..+|++|+. . ...|+++.|+.+.+++
T Consensus 172 ~~~---~~~------~~--~~~~~~~~-~~~-~-~~a~~~~~~~~~~li~~rR~--~-------~~~dlls~l~~a~~~~ 228 (411)
T COG2124 172 DAL---LLR------LD--PDLGPEEP-WRR-A-RAARRELDAYLRALIAERRA--A-------PRDDLLSLLLSAEDDG 228 (411)
T ss_pred HHH---Hhc------cC--cccCCccc-HHH-H-HHHHHHHHHHHHHHHHHhcc--C-------CcccHHHHHHHHhhCC
Confidence 000 000 00 22111100 000 1 11124467788899988884 1 1234999999876554
Q ss_pred --CCCHHHHHHHHHHHhhccccC
Q 021610 290 --EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 290 --~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.+|++||.+++.++++||.||
T Consensus 229 ~~~lsd~Ei~~~~~~ll~AGheT 251 (411)
T COG2124 229 GGRLSDDEIRDELITLLVAGHET 251 (411)
T ss_pred CCcCCHHHHHHHHHHHHHhhhHH
Confidence 499999999999999999886
No 33
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=80.39 E-value=9.8 Score=26.90 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=41.5
Q ss_pred CCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCe------eEEEEcCHHHHHHHHHh
Q 021610 31 FKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQR------NLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 31 ~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~------~~vvi~~pe~i~evl~~ 93 (310)
..+||--..+.++-|++- +-..+.+-++.-+||.|..+++|.. -.||-.|-..++.+...
T Consensus 11 ~rlppevnriLyirNLp~---~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPF---KITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred CCCChhhheeEEEecCCc---cccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH
Confidence 345665556666677642 2223456677789999999999854 36777788888888765
No 34
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=66.75 E-value=17 Score=22.06 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=28.2
Q ss_pred HHHHHhhCCeEEEEecCe----eEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 59 SDLAKKYGDVLLLRMGQR----NLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 59 ~~~~~~yG~v~~~~~g~~----~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
.+...+||+|-.+.+... -.|--.+++.++.+... ++..+.+|
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~ 49 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGR 49 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 456789999999887543 24445699999988864 44444443
No 35
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=66.07 E-value=26 Score=21.89 Aligned_cols=56 Identities=20% Similarity=0.398 Sum_probs=37.2
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEecCe--------eEEEEcCHHHHHHHHHh-cCcccCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQR--------NLVVVSSPDHAKEVLHT-QGVEFGS 100 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~--------~~vvi~~pe~i~evl~~-~~~~f~~ 100 (310)
++||++. +-....+.++..+||++..+++... -.|...+++.++.++.. ++..+.+
T Consensus 2 ~v~nlp~---~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 2 YVGNLPP---DVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEESETT---TSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred EEcCCCC---cCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 3567753 2134578888899999977765431 25566799999999974 4444433
No 36
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=63.37 E-value=17 Score=24.67 Aligned_cols=8 Identities=50% Similarity=0.995 Sum_probs=4.9
Q ss_pred CCCCcccc
Q 021610 37 PLPVPVFG 44 (310)
Q Consensus 37 P~~~pilG 44 (310)
|---|+||
T Consensus 64 PIYrPvI~ 71 (94)
T PF05393_consen 64 PIYRPVIG 71 (94)
T ss_pred Cccccccc
Confidence 33457777
No 37
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=56.87 E-value=42 Score=25.65 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHH
Q 021610 29 KRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLH 92 (310)
Q Consensus 29 ~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~ 92 (310)
...++|.|+.-.|+++|+.- +..-....+..+++..++.-..-+++..+.+.+++++.
T Consensus 50 ~~~GlpqG~~lS~~L~~~~l------~~~d~~i~~~~~~~~~~RY~DD~~i~~~~~~~~~~~~~ 107 (158)
T cd01646 50 QTNGLPIGPLTSRFLANIYL------NDVDHELKSKLKGVDYVRYVDDIRIFADSKEEAEEILE 107 (158)
T ss_pred CCceEccCcchHHHHHHHHH------HHHHHHHHhccCCceEEEecCcEEEEcCCHHHHHHHHH
Confidence 34578999998999999863 21112222325667766666666667778777666653
No 38
>PLN03120 nucleic acid binding protein; Provisional
Probab=51.54 E-value=72 Score=26.86 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=44.2
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEec------CeeEEEEcCHHHHHHHHHhcCcccCCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG------QRNLVVVSSPDHAKEVLHTQGVEFGSRTR 103 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g------~~~~vvi~~pe~i~evl~~~~~~f~~R~~ 103 (310)
++||+..-. ....+.++...||+|-.+.+. +.-.|-..+++.++.++.-++..+.+|+.
T Consensus 8 fVgNLs~~t---TE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V 72 (260)
T PLN03120 8 KVSNVSLKA---TERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSV 72 (260)
T ss_pred EEeCCCCCC---CHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceE
Confidence 467775321 245678888999999998873 34567778999999999888877877763
No 39
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=49.42 E-value=46 Score=24.51 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=28.2
Q ss_pred HHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHh
Q 021610 56 RNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 56 ~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~ 93 (310)
..+.+|.++||.+--. .+...+...|++.+++++..
T Consensus 78 ~~i~~w~~~~g~v~l~--~~~~~l~~~d~~~l~~l~~~ 113 (129)
T PF13625_consen 78 QSIEDWARRYGRVRLY--KGAYLLECDDPELLDELLAD 113 (129)
T ss_pred HHHHHHHHhcCCEEEe--cCeEEEEECCHHHHHHHHhC
Confidence 4789999999976642 24567778899999999865
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=48.24 E-value=71 Score=24.12 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=40.1
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEec---------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||+..-. ....+.++.++||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 37 lfVgnL~~~~---te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~ 105 (144)
T PLN03134 37 LFIGGLSWGT---DDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH 105 (144)
T ss_pred EEEeCCCCCC---CHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4567775321 345788888999999887663 2346667799999999975 444444443
No 41
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=47.98 E-value=58 Score=28.53 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=42.4
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecCee---------EEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRN---------LVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~---------~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||++.-. ....+.++..+||+|..+++...+ .|.-.+++.+..++.. ++..+.+|+
T Consensus 272 lfV~NL~~~~---~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~ 340 (352)
T TIGR01661 272 IFVYNLSPDT---DETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRV 340 (352)
T ss_pred EEEeCCCCCC---CHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3568876421 245678888999999998875333 6777799999888865 676777765
No 42
>PRK09458 pspB phage shock protein B; Provisional
Probab=40.45 E-value=61 Score=21.44 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 021610 5 LLEKTLLALFAAVVVAITVSKLRG 28 (310)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (310)
.++.+++.+|++.+..++.+++++
T Consensus 7 ~~PliiF~ifVaPiWL~LHY~sk~ 30 (75)
T PRK09458 7 AIPLTIFVLFVAPIWLWLHYRSKR 30 (75)
T ss_pred HHhHHHHHHHHHHHHHHHhhcccc
Confidence 333445555555554444444433
No 43
>PF15206 FAM209: FAM209 family
Probab=40.34 E-value=34 Score=25.48 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCCCCCCc
Q 021610 5 LLEKTLLALFAAVVVAITVSKLRG---KRFKLPPGPLPVP 41 (310)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ppgP~~~p 41 (310)
|+.+.++.++++++.|.+++.... ..-..|||..+.|
T Consensus 36 WLgsKwlWL~Fvv~lyvilKf~g~~~K~keq~p~glrg~~ 75 (150)
T PF15206_consen 36 WLGSKWLWLLFVVVLYVILKFRGDSEKNKEQSPPGLRGCS 75 (150)
T ss_pred hhhhHHHHHHHHHHHHheeEeccCcccccccCCCccCccc
Confidence 555677777777777766644321 1223577766655
No 44
>PF15205 PLAC9: Placenta-specific protein 9
Probab=39.68 E-value=18 Score=23.09 Aligned_cols=11 Identities=64% Similarity=1.666 Sum_probs=7.8
Q ss_pred CCCCCCCC-CCc
Q 021610 31 FKLPPGPL-PVP 41 (310)
Q Consensus 31 ~~~ppgP~-~~p 41 (310)
+++||||. |.|
T Consensus 57 wnlP~gp~sp~p 68 (74)
T PF15205_consen 57 WNLPPGPFSPAP 68 (74)
T ss_pred ccCCCCCCCCCc
Confidence 47899996 444
No 45
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=37.84 E-value=1.1e+02 Score=21.87 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=7.9
Q ss_pred CCccccccccc
Q 021610 39 PVPVFGNWLQV 49 (310)
Q Consensus 39 ~~pilGn~~~l 49 (310)
.-|+-||+...
T Consensus 45 ~~p~YgNL~~~ 55 (107)
T PF15330_consen 45 DDPCYGNLELQ 55 (107)
T ss_pred CCccccccccc
Confidence 46888988654
No 46
>smart00362 RRM_2 RNA recognition motif.
Probab=34.98 E-value=1.1e+02 Score=18.58 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=28.0
Q ss_pred hHHHHHHHHhhCCeEEEEecC-------eeEEEEcCHHHHHHHHHh
Q 021610 55 HRNLSDLAKKYGDVLLLRMGQ-------RNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 55 ~~~~~~~~~~yG~v~~~~~g~-------~~~vvi~~pe~i~evl~~ 93 (310)
...+.++.++||++..+.+-. .-.|-..+++.++.++..
T Consensus 13 ~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 58 (72)
T smart00362 13 EEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA 58 (72)
T ss_pred HHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 456777888999987765542 235556799999998764
No 47
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=34.40 E-value=41 Score=20.60 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=15.4
Q ss_pred hCCeEEEEecCeeEEEEc
Q 021610 65 YGDVLLLRMGQRNLVVVS 82 (310)
Q Consensus 65 yG~v~~~~~g~~~~vvi~ 82 (310)
-||+++++-|+..+.|..
T Consensus 3 ~GDvV~LKSGGp~MTV~~ 20 (53)
T PF09926_consen 3 IGDVVQLKSGGPRMTVTE 20 (53)
T ss_pred CCCEEEEccCCCCeEEEE
Confidence 389999999999888764
No 48
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=34.19 E-value=2.1e+02 Score=26.56 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=26.8
Q ss_pred HhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCC
Q 021610 63 KKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (310)
Q Consensus 63 ~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R 101 (310)
-+||.|+.-.+-++.+-|=-=|+.=++-+.+..++|+.-
T Consensus 221 Grfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~lp 259 (534)
T KOG3653|consen 221 GRFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYSLP 259 (534)
T ss_pred CccceeehhhccCceeEEEecCHHHHHHHHhHHHHHhcc
Confidence 478999988887766665444555566677777788663
No 49
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.15 E-value=58 Score=23.90 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhcCC
Q 021610 16 AVVVAITVSKLRGK 29 (310)
Q Consensus 16 ~~~~~~~~~~~~~~ 29 (310)
+++++|+++|.++|
T Consensus 81 Illi~y~irR~~Kk 94 (122)
T PF01102_consen 81 ILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhcc
Confidence 33344555555544
No 50
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=33.82 E-value=63 Score=24.74 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 021610 6 LEKTLLALFAAVVVAITVSKLRGKRFKLPPGPLP 39 (310)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppgP~~ 39 (310)
|-+..+...++.+.++|.++. ....||-|.+
T Consensus 154 IG~~VlA~~VA~L~~~F~RR~---~rrsppepsg 184 (215)
T PF05084_consen 154 IGAVVLAVSVAMLTWFFLRRT---GRRSPPEPSG 184 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---ccCCCCCCCC
Confidence 334555555555555444432 2334676653
No 51
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=33.82 E-value=32 Score=23.50 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=8.7
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 021610 1 MDLLLLEKTLLALFAAVVV 19 (310)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (310)
|-.++++-+++.+++++++
T Consensus 1 M~glG~~eLlIIlvIvLLl 19 (89)
T PRK03554 1 MGGISIWQLLIIAVIVVLL 19 (89)
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 4445554444444444333
No 52
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=31.80 E-value=1.4e+02 Score=21.83 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=9.2
Q ss_pred cCChhHHHHHh
Q 021610 121 VYGEHWRKMRR 131 (310)
Q Consensus 121 ~~g~~W~~~Rk 131 (310)
.+++.|..+++
T Consensus 76 ~d~e~Wl~m~~ 86 (124)
T PF08780_consen 76 DDGEIWLDMLE 86 (124)
T ss_dssp SHHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77899998875
No 53
>PF15102 TMEM154: TMEM154 protein family
Probab=30.86 E-value=31 Score=26.08 Aligned_cols=7 Identities=14% Similarity=0.254 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 021610 57 NLSDLAK 63 (310)
Q Consensus 57 ~~~~~~~ 63 (310)
.+.+|..
T Consensus 129 eldkwm~ 135 (146)
T PF15102_consen 129 ELDKWMN 135 (146)
T ss_pred HHHhHHH
Confidence 3444543
No 54
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=30.84 E-value=1.2e+02 Score=20.72 Aligned_cols=37 Identities=22% Similarity=0.442 Sum_probs=29.5
Q ss_pred HHHHHHHhhCCeEEEEecCe-eEEEEcCHHHHHHHHHh
Q 021610 57 NLSDLAKKYGDVLLLRMGQR-NLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 57 ~~~~~~~~yG~v~~~~~g~~-~~vvi~~pe~i~evl~~ 93 (310)
-+.++...||.|.--|+... -.|.+++.+.++.++..
T Consensus 24 DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 24 DIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp HHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHH
T ss_pred hHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHH
Confidence 45667778899999999754 56778999999988754
No 55
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=30.33 E-value=38 Score=22.29 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=8.7
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 021610 1 MDLLLLEKTLLALFAAVVV 19 (310)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (310)
|..+.++-+++.+++++++
T Consensus 1 mg~~g~~elliIl~Ivlll 19 (73)
T PRK02958 1 MGSFSIWHWLIVLVIVVLV 19 (73)
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 4445554444444444333
No 56
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=29.81 E-value=98 Score=24.34 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=32.1
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecCee----EEEEcCHHHHHHHH
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRN----LVVVSSPDHAKEVL 91 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~----~vvi~~pe~i~evl 91 (310)
-.+||+..=. ....|......||++..+|+...| .|=.-||..|.++.
T Consensus 13 VYVGnL~~~a---~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAv 64 (195)
T KOG0107|consen 13 VYVGNLGSRA---TKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAV 64 (195)
T ss_pred EEeccCCCCc---chHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHH
Confidence 4678886422 233567777889999999985433 55566777776664
No 57
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=28.66 E-value=44 Score=22.05 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=9.0
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 021610 1 MDLLLLEKTLLALFAAVVV 19 (310)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (310)
|-.++++-+++.+++++++
T Consensus 1 m~g~g~~elliIl~i~lll 19 (74)
T PRK01833 1 MGGISIWQLLIIVAIIVLL 19 (74)
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 4445555444444444333
No 58
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=27.81 E-value=38 Score=21.86 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=6.6
Q ss_pred CCCCCcccccc
Q 021610 36 GPLPVPVFGNW 46 (310)
Q Consensus 36 gP~~~pilGn~ 46 (310)
||+.+|=+|..
T Consensus 21 GpkKLp~lg~~ 31 (67)
T PRK03625 21 GTKKLRTLGGD 31 (67)
T ss_pred CccHHHHHHHH
Confidence 56666666543
No 59
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=27.07 E-value=2e+02 Score=22.13 Aligned_cols=15 Identities=33% Similarity=0.224 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 021610 10 LLALFAAVVVAITVS 24 (310)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (310)
|...++++.+..+.+
T Consensus 154 IG~~VlA~~VA~L~~ 168 (215)
T PF05084_consen 154 IGAVVLAVSVAMLTW 168 (215)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 60
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=26.60 E-value=1.3e+02 Score=21.18 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=29.7
Q ss_pred HHHHHHHhhCCeEEEE--------------ecCeeEEEEc--CHHHHHHHHHhcCcccCC
Q 021610 57 NLSDLAKKYGDVLLLR--------------MGQRNLVVVS--SPDHAKEVLHTQGVEFGS 100 (310)
Q Consensus 57 ~~~~~~~~yG~v~~~~--------------~g~~~~vvi~--~pe~i~evl~~~~~~f~~ 100 (310)
.+-+...+||+|.... ..+.+++-|. ++..++.+|.+++..+++
T Consensus 21 ~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g 80 (100)
T PF05172_consen 21 QVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSG 80 (100)
T ss_dssp HHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETT
T ss_pred HHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcC
Confidence 4455567899988764 2234555544 999999999999877654
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=25.95 E-value=1.7e+02 Score=27.26 Aligned_cols=47 Identities=15% Similarity=0.341 Sum_probs=34.9
Q ss_pred HHHHHHHHhhCCeEEEEecC------------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 56 RNLSDLAKKYGDVLLLRMGQ------------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 56 ~~~~~~~~~yG~v~~~~~g~------------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
+.+.+.+.+||+|..+.+.. .-.|--.+++.++.++.. ++..|.+|.
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~ 493 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRV 493 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 34677889999999988742 125667799999999876 666676665
No 62
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=25.07 E-value=1.8e+02 Score=19.33 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 021610 10 LLALFAAVVVAITVSKLR 27 (310)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (310)
++.+|++.+..++.++++
T Consensus 12 vf~ifVap~WL~lHY~sk 29 (75)
T PF06667_consen 12 VFMIFVAPIWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444444333333333
No 63
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=25.00 E-value=2.7e+02 Score=23.11 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=44.0
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEe------c---CeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhh
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRM------G---QRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~------g---~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~ 108 (310)
++|.+.+-. ..+.+.+..++||+|.-.-+ | +.-.|-..|+|.+..++.+....-.+|..+..+.
T Consensus 16 fVggL~w~T---~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 16 FVGGLAWET---HKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred EEcCccccc---chHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 567776533 24578899999998775321 2 2346777899999999988777777776444333
No 64
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=24.89 E-value=1.6e+02 Score=19.47 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 021610 9 TLLALFAAVVV 19 (310)
Q Consensus 9 ~~~~~~~~~~~ 19 (310)
+++.+|++.+.
T Consensus 11 iif~ifVap~w 21 (75)
T TIGR02976 11 IIFVIFVAPLW 21 (75)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 65
>PLN02196 abscisic acid 8'-hydroxylase
Probab=24.73 E-value=1.4e+02 Score=27.43 Aligned_cols=6 Identities=0% Similarity=0.290 Sum_probs=2.7
Q ss_pred HHHHHH
Q 021610 278 AIDHIL 283 (310)
Q Consensus 278 ll~~ll 283 (310)
++++.+
T Consensus 328 yl~avi 333 (463)
T PLN02196 328 LTSRVI 333 (463)
T ss_pred HHHHHH
Confidence 444444
No 66
>PRK02302 hypothetical protein; Provisional
Probab=24.35 E-value=1.9e+02 Score=19.90 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=22.0
Q ss_pred HhhCCeEEEEecCeeEEEEcCHHHHHHHHHh
Q 021610 63 KKYGDVLLLRMGQRNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 63 ~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~ 93 (310)
++||+|..+-=--.-+|+=.|-+.++++..+
T Consensus 24 rkfG~I~Y~Skk~kYvvlYvn~~~~e~~~~k 54 (89)
T PRK02302 24 SKYGDIVYHSKRSRYLVLYVNKEDVEQKLEE 54 (89)
T ss_pred hhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 6799998765433445555688888888766
No 67
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=24.27 E-value=4.2e+02 Score=22.11 Aligned_cols=106 Identities=16% Similarity=0.307 Sum_probs=61.9
Q ss_pred HHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCccc---CCCCCcchhhhhcCCCceeEeccCChhHHHHHhh
Q 021610 56 RNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEF---GSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRI 132 (310)
Q Consensus 56 ~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f---~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~ 132 (310)
+...+..++++|=|.+.+++.+. .-+|..++|+|...+-.+ ++.|....-+.+-..|.+-++..-++.---.|.+
T Consensus 50 ~~~~~~~~~~~pDf~i~isPN~a--~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYIivk~DpMIGArREF 127 (277)
T PRK00994 50 EVVKKMLEEWKPDFVIVISPNPA--APGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYIIVKADPMIGARREF 127 (277)
T ss_pred HHHHHHHHhhCCCEEEEECCCCC--CCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEEEEecCccccchhhc
Confidence 34555667889999998886654 479999999998764433 5555332223332222222333322333333444
Q ss_pred hccc----CCChHHHHHh-----HHHHHHHHHHHHHHHhcC
Q 021610 133 MTVP----FFTNKVVQQQ-----RFNWEDEAARVVEDVKKD 164 (310)
Q Consensus 133 l~~~----~f~~~~~~~~-----~~~~~~~~~~ll~~l~~~ 164 (310)
+ -| +|+...++-+ ..+++++...+++.+.+.
T Consensus 128 L-DP~EMa~fNaD~~kVLa~tG~~RlvQ~elD~vi~~v~~G 167 (277)
T PRK00994 128 L-DPVEMALFNADVLKVLAGTGAVRLVQEELDKVIDQVKEG 167 (277)
T ss_pred c-CHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHHHHHhcC
Confidence 3 34 4777665532 346778888888888653
No 68
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at
Probab=24.15 E-value=2.1e+02 Score=20.59 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCcccccccccCCCcchHHHHHHHHh----hCCeEEEEecCeeEEEEcCHHHHHHHHH
Q 021610 30 RFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKK----YGDVLLLRMGQRNLVVVSSPDHAKEVLH 92 (310)
Q Consensus 30 ~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~----yG~v~~~~~g~~~~vvi~~pe~i~evl~ 92 (310)
..++|.|++-.|++.|+.. +.....+.+. -++...++.-..-.++..+.+.+++++.
T Consensus 17 ~~GlpQG~~lSp~L~nl~l------~~l~~~~~~~~~~~~~~~~~~rYaDD~li~~~~~~~~~~~~~ 77 (119)
T cd01648 17 KVGIPQGSPLSSLLCSLYY------ADLENKYLSFLDVIDKDSLLLRLVDDFLLITTSLDKAIKFLN 77 (119)
T ss_pred cCcccCCcchHHHHHHHHH------HHHHHHHHhhcccCCCCceEEEEeCcEEEEeCCHHHHHHHHH
Confidence 4568899988899988752 1111222221 1334444444444445556777777664
No 69
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=24.00 E-value=3.3e+02 Score=25.33 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=39.9
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEec----CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g----~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
++||+..- +-....+.++..+||+|.++++- +.-.|-..+++.+..++.. ++..+.+++
T Consensus 279 ~v~nL~~~--~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~ 342 (481)
T TIGR01649 279 MVSGLHQE--KVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKP 342 (481)
T ss_pred EEeCCCCC--CCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 45666421 11235678888999999998873 3456667799999999964 555555554
No 70
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=23.59 E-value=3.5e+02 Score=24.00 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=33.8
Q ss_pred hHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 55 HRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 55 ~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
...+.++.++||+|..+++-. .-.|-..+++.++.++.. ++..+.+++
T Consensus 121 e~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~ 178 (346)
T TIGR01659 121 DRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR 178 (346)
T ss_pred HHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce
Confidence 456788889999998877632 245667799999999865 444444443
No 71
>PHA02902 putative IMV membrane protein; Provisional
Probab=22.98 E-value=1.9e+02 Score=18.39 Aligned_cols=17 Identities=0% Similarity=0.262 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021610 9 TLLALFAAVVVAITVSK 25 (310)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (310)
+++.+.+|+++|..+++
T Consensus 10 ~v~v~Ivclliya~YrR 26 (70)
T PHA02902 10 AVIVIIFCLLIYAAYKR 26 (70)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555554444
No 72
>PRK04023 DNA polymerase II large subunit; Validated
Probab=22.64 E-value=1.1e+02 Score=31.22 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=39.5
Q ss_pred CCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcCCCceeEeccCChhHHHH
Q 021610 66 GDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKM 129 (310)
Q Consensus 66 G~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~ 129 (310)
||+++++-| .++=|.|++.+.++-..=-.+..-.-....+..|..+++..+-++|-++|..+
T Consensus 370 gPtVrL~nG--dV~ridd~~~A~~~~~~VeeIldlGeiLi~yGdFlENNhpL~Ps~y~~EWW~q 431 (1121)
T PRK04023 370 GPTVRLKNG--DVVRIDDVEEAKEIRDDVEEILDLGEILINYGDFLENNHPLLPSSYCEEWWIQ 431 (1121)
T ss_pred CCeEEecCC--CEEEeCCHHHHHHHhhchhhhhhhhhhhcccchhhhcCCcCCCccccHHHHHH
Confidence 788888877 47778999999998543222211111222334456666677788888888754
No 73
>KOG4241 consensus Mitochondrial ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=22.16 E-value=74 Score=25.60 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=26.0
Q ss_pred hhCCeEEEEecCeeEEEEcCHHHHHHHHHh
Q 021610 64 KYGDVLLLRMGQRNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 64 ~yG~v~~~~~g~~~~vvi~~pe~i~evl~~ 93 (310)
+|.++..++.|...+++..|++.+++++..
T Consensus 135 ~y~~l~plfvgnh~ill~~d~~kik~~lri 164 (245)
T KOG4241|consen 135 PYSSLNPLFVGNHAILLAKDISKIKSILRI 164 (245)
T ss_pred chhhhhhheeccceEEEcCChHHHHHHHHH
Confidence 566777888999999999999999999965
No 74
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=22.14 E-value=1.1e+02 Score=30.97 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=39.2
Q ss_pred CCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcCCCceeEeccCChhHHHHH
Q 021610 66 GDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMR 130 (310)
Q Consensus 66 G~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~R 130 (310)
||++++.-| .++=|.|++.+.++-..=..+..-.-....+..|..+++..+-+++-++|..+=
T Consensus 368 gPtVkL~nG--dV~rIdd~~~A~~~~~~VeeIldlGeiLv~yGdFlENNhpL~Ps~y~~EWW~qe 430 (1095)
T TIGR00354 368 GPTVKLKNG--DVIRINTLEEAKAVRGEVEEILFLGDILVNYGDFLENNHPLIPASWCEEWWIQE 430 (1095)
T ss_pred CCeeEecCC--CEEEeCCHHHHHHHHhchhhhhhhhhhhhcchhhhhcCCcCCCccchHHHHHHH
Confidence 788888777 477789999999985332112111112223344566666777778888996543
No 75
>PRK02886 hypothetical protein; Provisional
Probab=22.11 E-value=2.3e+02 Score=19.43 Aligned_cols=31 Identities=13% Similarity=0.393 Sum_probs=22.1
Q ss_pred HhhCCeEEEEecCeeEEEEcCHHHHHHHHHh
Q 021610 63 KKYGDVLLLRMGQRNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 63 ~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~ 93 (310)
++||+|..+-=--.-+|+=.|-+.+.++..+
T Consensus 22 rkyG~I~Y~Skr~kYvvlYvn~~~~e~~~~k 52 (87)
T PRK02886 22 RKFGNVHYVSKRLKYAVLYCDMEQVEDIMNK 52 (87)
T ss_pred hhcCcEEEEeccccEEEEEECHHHHHHHHHH
Confidence 6799998765433445555688888888765
No 76
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=21.56 E-value=2.7e+02 Score=26.43 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=40.5
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEec--------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g--------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.++||+..-. ....+.++..+||.|..+++- +.-.|...+++.+..++.. ++..+.+|+
T Consensus 288 l~V~nl~~~~---~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~ 355 (562)
T TIGR01628 288 LYVKNLDDTV---TDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKP 355 (562)
T ss_pred EEEeCCCCcc---CHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCce
Confidence 4567775321 245678888999999887762 2347778899999999865 444455544
No 77
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=21.24 E-value=83 Score=20.79 Aligned_cols=9 Identities=11% Similarity=-0.001 Sum_probs=4.5
Q ss_pred CCCCCcccc
Q 021610 36 GPLPVPVFG 44 (310)
Q Consensus 36 gP~~~pilG 44 (310)
||+.+|=+|
T Consensus 21 G~~KLPel~ 29 (75)
T PRK04561 21 GTKRLTSGA 29 (75)
T ss_pred CCcchHHHH
Confidence 455555443
No 78
>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).
Probab=21.14 E-value=2e+02 Score=22.96 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=37.6
Q ss_pred CCCCCCCCCCCcccccccccCCCcchHHHHHHHH--------hhCCeEEEEecCeeEEEEcCHHHHHHHHH
Q 021610 30 RFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAK--------KYGDVLLLRMGQRNLVVVSSPDHAKEVLH 92 (310)
Q Consensus 30 ~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~--------~yG~v~~~~~g~~~~vvi~~pe~i~evl~ 92 (310)
..++|.|.+--|++.|+..-. ....+.+..+ ..+++..+.....-++++++++.+++++.
T Consensus 124 ~~GlpqG~~lSp~L~~~~l~~---ld~~l~~~~~~~~~~~~~~~~~~~~~rY~DD~~i~~~~~~~~~~~~~ 191 (226)
T cd01651 124 EKGTPQGGVISPLLANIYLHE---LDKFVEEKLKEYYDTSDPKFRRLRYVRYADDFVIGVRGPKEAEEIKE 191 (226)
T ss_pred CCCcCCCccHHHHHHHHHHHH---HHHHHHHhhhhcccccccccCceEEEEecCceEEecCCHHHHHHHHH
Confidence 345788887788888875211 1223333322 23567777777777888888887766653
No 79
>COG3924 Predicted membrane protein [Function unknown]
Probab=21.04 E-value=2.2e+02 Score=18.66 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcc
Q 021610 11 LALFAAVVVAITVSKLRGKRFKLPPGPLPVPV 42 (310)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~ppgP~~~pi 42 (310)
+.+-+++++.|.+.-.-. +.-||+.++|.
T Consensus 16 lgLtllYl~gW~v~AYlp---~~t~G~~gfP~ 44 (80)
T COG3924 16 LGLTLLYLAGWLVAAYLP---GNTPGFTGFPL 44 (80)
T ss_pred HHHHHHHHHHHHHHHhCC---CCCCCCCCChH
Confidence 344455555555532221 23488888884
No 80
>PHA01327 hypothetical protein
Probab=21.02 E-value=34 Score=19.46 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=13.0
Q ss_pred eEeccCChhHHHHHhhh
Q 021610 117 MVFTVYGEHWRKMRRIM 133 (310)
Q Consensus 117 ~~~~~~g~~W~~~Rk~l 133 (310)
+++...|+.|++.|--|
T Consensus 13 ~vinehge~wqer~drm 29 (49)
T PHA01327 13 NVINEHGEEWQERKDRM 29 (49)
T ss_pred hHHHhhHHHHHHHHHHH
Confidence 36678899999977644
No 81
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=20.89 E-value=2.4e+02 Score=17.96 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=17.1
Q ss_pred hHHHHHHHHhhCCeEEEEecCeeEEEEc
Q 021610 55 HRNLSDLAKKYGDVLLLRMGQRNLVVVS 82 (310)
Q Consensus 55 ~~~~~~~~~~yG~v~~~~~g~~~~vvi~ 82 (310)
...|.+|+.+||--|... |++..-+|.
T Consensus 9 f~afk~was~ygvefktn-gsqtlaii~ 35 (79)
T PF09061_consen 9 FNAFKEWASKYGVEFKTN-GSQTLAIIK 35 (79)
T ss_dssp HHHHHHHHHTTT-EEEEE-TTEEEEEET
T ss_pred HHHHHHHHHHhCeEEecC-CceEEEeec
Confidence 567899999999655432 455544443
No 82
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=20.74 E-value=2e+02 Score=19.32 Aligned_cols=17 Identities=6% Similarity=0.221 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021610 9 TLLALFAAVVVAITVSK 25 (310)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (310)
+++..++|+++|..+++
T Consensus 10 ~V~V~IVclliya~YRR 26 (92)
T PHA02681 10 VIVISIVCYIVIMMYRR 26 (92)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444455555555544
No 83
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=20.72 E-value=2e+02 Score=17.85 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=32.9
Q ss_pred cccccccCCCcchHHHHHHHHhhCCeEEEEecCe--------eEEEEcCHHHHHHHHHhcC
Q 021610 43 FGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQR--------NLVVVSSPDHAKEVLHTQG 95 (310)
Q Consensus 43 lGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~--------~~vvi~~pe~i~evl~~~~ 95 (310)
++|++. .-....+.++...||+|-.+.+... -.|-..+++.+++++....
T Consensus 3 i~nlp~---~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 3 ISNLPP---STTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EESSTT---T--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EeCCCC---CCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 456543 1124567778888998877665322 3556779999999997654
No 84
>smart00360 RRM RNA recognition motif.
Probab=20.40 E-value=2.1e+02 Score=17.04 Aligned_cols=39 Identities=23% Similarity=0.420 Sum_probs=28.0
Q ss_pred hHHHHHHHHhhCCeEEEEecCe---------eEEEEcCHHHHHHHHHh
Q 021610 55 HRNLSDLAKKYGDVLLLRMGQR---------NLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 55 ~~~~~~~~~~yG~v~~~~~g~~---------~~vvi~~pe~i~evl~~ 93 (310)
...+.++.++||++..+.+-.. -.|-..+++.++.++..
T Consensus 10 ~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~ 57 (71)
T smart00360 10 EEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA 57 (71)
T ss_pred HHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 4567778889999887765432 24556799999888754
Done!