Query 021610
Match_columns 310
No_of_seqs 126 out of 1086
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 06:39:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 2.9E-34 9.9E-39 263.3 21.9 270 28-310 4-288 (494)
2 3e6i_A CYPIIE1, P450-J, cytoch 100.0 2E-31 6.8E-36 243.2 20.9 268 28-310 6-282 (476)
3 3s79_A Cytochrome P450 19A1; o 100.0 1.5E-31 5E-36 245.8 19.2 263 30-310 43-310 (503)
4 3qz1_A Steroid 21-hydroxylase; 100.0 2.4E-32 8.3E-37 250.6 12.2 264 27-310 24-294 (496)
5 3pm0_A Cypib1, cytochrome P450 100.0 1.9E-31 6.5E-36 245.2 18.2 269 30-310 7-294 (507)
6 3nxu_A Cytochrome P450 3A4; al 100.0 4.1E-32 1.4E-36 248.4 11.7 261 33-310 15-287 (485)
7 3tbg_A Cytochrome P450 2D6; mo 100.0 1.8E-30 6.3E-35 236.9 20.9 270 30-310 8-287 (479)
8 1r9o_A Cytochrome P450 2C9; mo 100.0 1.4E-30 4.8E-35 237.8 19.7 273 25-310 4-284 (477)
9 3k9v_A 1,25-dihydroxyvitamin D 100.0 2E-30 7E-35 236.8 20.6 268 27-310 19-298 (482)
10 3czh_A Cytochrome P450 2R1; vi 100.0 2.8E-30 9.6E-35 236.1 19.4 269 30-310 10-288 (481)
11 1po5_A Cytochrome P450 2B4; ox 100.0 2.2E-30 7.6E-35 236.5 17.8 266 29-310 7-283 (476)
12 2hi4_A Cytochrome P450 1A2; CY 100.0 4.9E-30 1.7E-34 235.3 19.7 265 33-310 17-297 (495)
13 2fdv_A Cytochrome P450 2A6; CY 100.0 4.6E-30 1.6E-34 234.4 19.4 268 29-310 7-283 (476)
14 3gw9_A Sterol 14alpha-demethyl 100.0 7.3E-30 2.5E-34 231.2 15.3 261 32-310 3-268 (450)
15 3ld6_A Lanosterol 14-alpha dem 100.0 1.7E-29 5.9E-34 229.7 14.4 253 32-310 11-267 (461)
16 2ij2_A Cytochrome P450 BM3; mo 100.0 2.5E-27 8.6E-32 215.9 23.2 254 32-310 3-268 (470)
17 3n9y_A Cholesterol SIDE-chain 100.0 5.9E-28 2E-32 220.9 17.9 270 28-310 5-290 (487)
18 3i3k_A Lanosterol 14-alpha dem 100.0 2.1E-28 7.3E-33 222.4 14.1 257 28-310 7-267 (461)
19 2cib_A Cytochrome P450 51; hem 100.0 2.7E-27 9.2E-32 214.9 19.3 252 32-310 4-260 (455)
20 2ve3_A Putative cytochrome P45 99.9 7.1E-27 2.4E-31 211.5 19.5 248 29-310 9-258 (444)
21 3dbg_A Putative cytochrome P45 99.9 8.7E-27 3E-31 212.2 11.2 251 32-310 23-278 (467)
22 3v8d_A Cholesterol 7-alpha-mon 99.9 4.3E-26 1.5E-30 208.8 8.3 258 28-310 9-272 (491)
23 2cd8_A Cytochrome P450 monooxy 99.9 1.8E-24 6.1E-29 195.2 18.0 235 31-310 25-267 (436)
24 1jfb_A Nitric-oxide reductase 99.9 2.4E-23 8.4E-28 186.0 20.3 237 33-310 2-244 (404)
25 3mdm_A Cholesterol 24-hydroxyl 99.9 2.9E-23 1E-27 188.2 21.0 242 52-310 10-258 (456)
26 1cpt_A Cytochrome P450-TERP; o 99.9 1.2E-22 4.2E-27 182.8 17.8 249 30-310 4-271 (428)
27 3dax_A Cytochrome P450 7A1; ch 99.9 2.5E-23 8.4E-28 190.4 11.8 256 30-310 11-272 (491)
28 3b6h_A Prostacyclin synthase; 99.9 1.5E-22 5E-27 185.7 16.5 258 27-310 13-277 (498)
29 1ued_A P450 OXYC, P450 monooxy 99.9 1E-21 3.6E-26 175.5 20.1 229 31-310 9-249 (406)
30 2zbx_A Cytochrome P450-SU1; be 99.9 6.4E-21 2.2E-25 170.7 21.3 233 32-310 5-248 (412)
31 1n97_A CYP175A1; electron tran 99.9 4.4E-23 1.5E-27 183.4 7.0 148 35-196 2-150 (389)
32 3awm_A Fatty acid alpha-hydrox 99.9 8.5E-21 2.9E-25 170.1 20.6 237 34-310 4-245 (415)
33 3ivy_A Cytochrome P450 CYP125; 99.9 5.1E-21 1.7E-25 172.4 17.3 240 29-310 15-272 (433)
34 1izo_A P450bsbeta, cytochrome 99.9 3.5E-20 1.2E-24 166.2 21.2 236 38-310 6-246 (417)
35 3b98_A Prostaglandin I2 syntha 99.9 1.7E-21 5.7E-26 177.5 11.6 249 28-310 14-268 (475)
36 2zwu_A Camphor 5-monooxygenase 99.8 3.6E-20 1.2E-24 166.0 18.7 235 28-310 7-253 (415)
37 3oo3_A OXY protein; cytochrome 99.8 4.5E-20 1.5E-24 163.7 17.5 214 53-310 13-230 (384)
38 1s1f_A Putative cytochrome P45 99.8 5.6E-20 1.9E-24 164.3 17.8 230 32-310 8-245 (406)
39 3aba_A Cytochrome P450; oxidor 99.8 1.1E-19 3.8E-24 162.2 19.4 214 54-310 21-241 (403)
40 3abb_A CYP105D6, cytochrome P4 99.8 6.2E-20 2.1E-24 164.1 17.4 218 48-310 21-247 (408)
41 2jjn_A Cytochrome P450 113A1; 99.8 3.9E-20 1.3E-24 165.6 15.6 237 20-310 7-245 (411)
42 3ejb_B Biotin biosynthesis cyt 99.8 2.2E-19 7.4E-24 160.3 20.0 217 54-310 15-238 (404)
43 2wm5_A CYP124, putative cytoch 99.8 1.6E-19 5.3E-24 162.8 17.4 222 53-310 45-278 (435)
44 3tyw_A Putative cytochrome P45 99.8 5.1E-19 1.7E-23 158.6 20.6 215 53-310 30-253 (417)
45 3a4g_A Vitamin D hydroxylase; 99.8 7.3E-19 2.5E-23 157.3 21.2 212 54-310 22-240 (411)
46 3tkt_A Cytochrome P450; aromat 99.8 9.1E-20 3.1E-24 165.0 15.2 228 54-310 47-293 (450)
47 1odo_A Putative cytochrome P45 99.8 4.2E-19 1.4E-23 158.7 18.7 216 53-310 16-246 (408)
48 2y5n_A MYCG, P-450-like protei 99.8 5.2E-19 1.8E-23 158.5 18.3 216 53-310 38-258 (417)
49 1q5d_A P450 epoxidase; cytochr 99.8 2.6E-19 8.8E-24 160.6 15.9 222 53-310 27-258 (419)
50 1z8o_A 6-deoxyerythronolide B 99.8 9.7E-19 3.3E-23 156.1 19.4 211 54-310 16-245 (404)
51 4fb2_A P450CIN; heme, monooxyg 99.8 9.8E-20 3.3E-24 162.3 12.9 213 53-310 20-236 (398)
52 2z36_A MOXA, cytochrome P450 t 99.8 8.4E-19 2.9E-23 157.0 18.9 215 53-310 23-249 (413)
53 2z3t_A Cytochrome P450; monoxy 99.8 1.4E-18 4.8E-23 156.1 20.0 217 54-310 22-258 (425)
54 1gwi_A CYP154C1, cytochrome P4 99.8 2.5E-18 8.6E-23 153.8 19.4 214 54-310 19-246 (411)
55 3dsk_A Cytochrome P450 74A, ch 99.8 3.8E-20 1.3E-24 169.5 7.2 163 29-197 25-205 (495)
56 3r9b_A Cytochrome P450 164A2; 99.8 4.3E-19 1.5E-23 159.2 13.8 221 53-310 30-260 (418)
57 2xkr_A CYP142, putative cytoch 99.8 3.6E-18 1.2E-22 152.2 19.2 214 53-310 19-234 (398)
58 3lxh_A Cytochrome P450; heme, 99.8 1.5E-18 5.1E-23 155.8 16.4 219 53-310 39-260 (421)
59 2uuq_A CYP130, cytochrome P450 99.8 2.4E-18 8.2E-23 154.1 15.3 215 53-310 26-254 (414)
60 3buj_A CALO2; heme, iron, meta 99.8 8.9E-18 3E-22 149.6 17.5 213 54-310 15-237 (397)
61 2xbk_A PIMD protein; epoxidati 99.8 4.4E-17 1.5E-21 145.3 20.5 208 54-310 28-245 (404)
62 3oft_A Cytochrome P450, CYP101 99.8 6.6E-18 2.2E-22 150.3 15.0 212 53-310 25-238 (396)
63 3mgx_A Putative P450 monooxyge 99.8 4.9E-18 1.7E-22 152.0 14.1 215 53-310 38-258 (415)
64 2dkk_A Cytochrome P450; CYP158 99.8 2.7E-17 9.2E-22 147.1 17.2 215 52-310 27-248 (411)
65 3nc3_A Cytochrome P450 CYPX; c 99.7 1.9E-18 6.4E-23 156.0 8.2 217 54-310 55-273 (441)
66 1lfk_A OXYB, P450 monooxygenas 99.7 7.3E-17 2.5E-21 143.7 18.4 208 59-310 20-240 (398)
67 3dan_A Cytochrome P450 74A2; A 99.7 7E-18 2.4E-22 153.5 10.4 165 29-197 6-187 (473)
68 3rwl_A Cytochrome P450 alkane 99.7 9.5E-17 3.2E-21 144.2 16.9 221 53-310 39-269 (426)
69 3b4x_A 367AA long hypothetical 99.7 7.9E-17 2.7E-21 141.9 14.1 204 54-310 1-214 (367)
70 3p3o_A Cytochrome P450; monoox 99.7 3.2E-17 1.1E-21 146.9 11.1 216 54-310 35-257 (416)
71 2wiy_A XPLA-heme, cytochrome P 99.7 1E-15 3.5E-20 136.1 16.3 216 54-310 22-237 (394)
72 1n40_A P450 MT2, cytochrome P4 99.7 2.6E-16 9E-21 140.0 11.0 209 53-310 17-237 (396)
73 1io7_A Cytochrome P450 CYP119; 99.7 2.5E-15 8.6E-20 132.3 17.0 203 54-310 1-213 (368)
74 2rfb_A Cytochrome P450; heme, 99.6 2.2E-15 7.6E-20 131.4 10.7 189 63-310 2-192 (343)
75 4dnj_A Putative cytochrome P45 99.5 1.5E-13 5.2E-18 122.8 13.4 122 37-164 17-144 (412)
76 4dxy_A Cytochrome P450, CYP101 99.4 1.6E-11 5.4E-16 109.7 17.2 218 54-310 39-259 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 97.9 5E-08 1.7E-12 85.7 -9.4 131 33-196 35-180 (381)
78 2diu_A KIAA0430 protein; struc 91.2 0.4 1.4E-05 32.4 5.0 62 41-103 12-76 (96)
79 3lqv_A PRE-mRNA branch site pr 87.2 3.4 0.00012 28.5 7.9 66 33-101 3-75 (115)
80 1s79_A Lupus LA protein; RRM, 85.3 3.7 0.00013 28.0 7.1 61 39-102 12-80 (103)
81 3s6e_A RNA-binding protein 39; 84.2 1.4 4.9E-05 30.8 4.5 70 33-102 2-84 (114)
82 2pe8_A Splicing factor 45; RRM 80.9 3 0.0001 28.6 5.1 69 34-102 4-85 (105)
83 1iqt_A AUF1, heterogeneous nuc 80.5 3.3 0.00011 25.9 4.9 58 42-102 3-69 (75)
84 2dnz_A Probable RNA-binding pr 79.9 10 0.00035 24.8 7.8 63 37-102 4-76 (95)
85 2krb_A Eukaryotic translation 78.3 10 0.00036 24.0 7.3 60 42-101 5-75 (81)
86 4f25_A Polyadenylate-binding p 77.7 6.3 0.00022 27.2 6.1 59 41-102 8-74 (115)
87 2mss_A Protein (musashi1); RNA 77.7 5.4 0.00018 24.9 5.3 58 42-102 3-69 (75)
88 2a3j_A U1 small nuclear ribonu 77.4 8.1 0.00028 27.5 6.7 63 40-102 31-101 (127)
89 3ue2_A Poly(U)-binding-splicin 76.1 6.2 0.00021 27.7 5.6 66 37-102 19-100 (118)
90 4fxv_A ELAV-like protein 1; RN 75.5 6.7 0.00023 26.3 5.5 59 41-102 22-90 (99)
91 2nlw_A Eukaryotic translation 74.6 15 0.0005 24.8 7.2 63 39-101 16-89 (105)
92 1whx_A Hypothetical protein ri 74.6 13 0.00046 25.4 7.1 59 41-102 13-75 (111)
93 3s7r_A Heterogeneous nuclear r 73.2 7.7 0.00026 25.0 5.3 62 37-101 10-80 (87)
94 1p27_B RNA-binding protein 8A; 73.1 18 0.00061 24.2 7.6 59 41-102 26-94 (106)
95 2cqc_A Arginine/serine-rich sp 72.3 14 0.00047 24.1 6.5 64 35-101 12-85 (95)
96 3mdf_A Peptidyl-prolyl CIS-tra 71.8 16 0.00054 23.2 6.6 62 37-101 6-77 (85)
97 3beg_B Splicing factor, argini 71.8 19 0.00065 24.7 7.4 59 41-102 19-80 (115)
98 2kvi_A Nuclear polyadenylated 71.4 16 0.00055 24.0 6.7 61 39-102 11-74 (96)
99 2dgv_A HnRNP M, heterogeneous 71.4 18 0.00061 23.4 7.5 60 40-102 10-77 (92)
100 2wbr_A GW182, gawky, LD47780P; 71.3 16 0.00054 24.2 6.2 53 38-93 7-62 (89)
101 3ns6_A Eukaryotic translation 70.3 15 0.00052 24.4 6.4 64 39-102 7-84 (100)
102 1nu4_A U1A RNA binding domain; 70.0 7.2 0.00025 25.7 4.7 63 39-101 9-79 (97)
103 3bs9_A Nucleolysin TIA-1 isofo 69.3 9.8 0.00033 24.4 5.1 59 40-101 8-76 (87)
104 1oo0_B CG8781-PA, drosophila Y 69.1 17 0.00058 24.5 6.6 58 41-101 29-96 (110)
105 2d9p_A Polyadenylate-binding p 68.3 23 0.00079 23.5 7.3 65 35-102 12-84 (103)
106 3v4m_A Splicing factor U2AF 65 68.2 13 0.00045 25.3 5.7 66 37-102 4-88 (105)
107 2dgs_A DAZ-associated protein 68.0 23 0.00078 23.3 7.3 61 39-102 11-80 (99)
108 3md1_A Nuclear and cytoplasmic 68.0 13 0.00044 23.5 5.4 58 42-102 5-72 (83)
109 2kxn_B Transformer-2 protein h 67.9 29 0.00099 24.4 9.2 63 37-102 45-117 (129)
110 2jrs_A RNA-binding protein 39; 67.8 23 0.0008 23.9 7.0 59 41-102 29-97 (108)
111 2cq3_A RNA-binding protein 9; 67.7 23 0.00079 23.5 7.0 61 39-102 16-84 (103)
112 1x5p_A Negative elongation fac 67.1 22 0.00075 23.3 6.7 58 39-101 16-77 (97)
113 2la6_A RNA-binding protein FUS 66.8 24 0.00083 23.2 7.0 60 40-102 15-92 (99)
114 2jvr_A Nucleolar protein 3; RN 66.5 11 0.00039 25.9 5.1 60 40-102 30-96 (111)
115 2cpf_A RNA binding motif prote 66.1 21 0.00072 23.4 6.4 61 39-102 6-79 (98)
116 2hvz_A Splicing factor, argini 65.7 16 0.00054 24.3 5.7 58 42-102 4-66 (101)
117 3ex7_B RNA-binding protein 8A; 65.6 25 0.00084 24.4 7.0 60 40-102 24-93 (126)
118 4a8x_A RNA-binding protein wit 65.6 19 0.00065 22.9 6.0 59 41-102 7-76 (88)
119 2dnp_A RNA-binding protein 14; 65.5 24 0.00083 22.7 7.0 63 37-102 8-72 (90)
120 1x5s_A Cold-inducible RNA-bind 65.2 27 0.00091 23.1 7.3 63 37-102 11-83 (102)
121 2do4_A Squamous cell carcinoma 64.9 27 0.00092 23.0 7.6 61 39-102 18-87 (100)
122 2xnq_A Nuclear polyadenylated 64.7 26 0.00088 23.1 6.6 60 40-101 24-85 (97)
123 1rk8_A CG8781-PA, CG8781-PA pr 64.7 17 0.00058 26.9 6.2 59 41-102 75-143 (165)
124 3s8s_A Histone-lysine N-methyl 64.6 17 0.00058 24.8 5.8 61 39-102 7-77 (110)
125 2dnq_A RNA-binding protein 4B; 64.5 25 0.00087 22.6 7.4 63 37-102 7-71 (90)
126 1whw_A Hypothetical protein ri 64.5 24 0.00081 23.2 6.5 61 39-102 9-79 (99)
127 2e5h_A Zinc finger CCHC-type a 64.0 19 0.00065 23.3 5.8 59 39-100 17-85 (94)
128 3ctr_A Poly(A)-specific ribonu 63.7 8.3 0.00028 26.1 3.7 47 56-102 20-69 (101)
129 2dh8_A DAZ-associated protein 63.5 16 0.00055 24.4 5.5 61 39-102 17-86 (105)
130 2div_A TRNA selenocysteine ass 63.5 25 0.00085 23.1 6.4 65 35-102 6-81 (99)
131 1wg5_A Heterogeneous nuclear r 63.4 22 0.00075 23.8 6.1 60 40-102 17-85 (104)
132 1sjq_A Polypyrimidine tract-bi 63.4 32 0.0011 23.4 7.1 63 37-102 15-83 (105)
133 2i2y_A Fusion protein consists 63.3 39 0.0013 24.3 8.1 60 40-102 75-139 (150)
134 2dgx_A KIAA0430 protein; RRM d 63.1 16 0.00055 24.0 5.3 63 40-102 11-81 (96)
135 2x1f_A MRNA 3'-END-processing 62.9 23 0.00079 23.1 6.1 59 40-101 4-72 (96)
136 1sjr_A Polypyrimidine tract-bi 62.9 43 0.0015 24.9 8.0 54 42-98 50-109 (164)
137 2jwn_A Embryonic polyadenylate 62.6 15 0.00052 25.5 5.4 58 42-102 40-106 (124)
138 2cph_A RNA binding motif prote 62.5 31 0.0011 22.9 7.8 60 40-102 17-88 (107)
139 1x4e_A RNA binding motif, sing 62.3 16 0.00056 23.2 5.1 62 36-100 3-74 (85)
140 3d2w_A TAR DNA-binding protein 62.0 21 0.00073 23.1 5.7 53 35-90 8-64 (89)
141 1wi8_A EIF-4B, eukaryotic tran 61.2 20 0.0007 23.8 5.7 65 34-102 11-85 (104)
142 1why_A Hypothetical protein ri 61.0 32 0.0011 22.5 8.1 60 37-99 16-79 (97)
143 3ulh_A THO complex subunit 4; 60.9 23 0.00078 23.7 5.9 59 40-101 31-98 (107)
144 1x5u_A Splicing factor 3B subu 60.9 33 0.0011 22.7 8.2 60 40-102 17-86 (105)
145 2bz2_A Negative elongation fac 60.8 19 0.00067 25.0 5.6 58 40-102 41-102 (121)
146 1x4c_A Splicing factor, argini 60.7 35 0.0012 22.9 7.2 57 41-100 18-77 (108)
147 2cqi_A Nucleolysin TIAR; RNA r 60.4 32 0.0011 22.7 6.6 61 39-102 16-84 (103)
148 3ucg_A Polyadenylate-binding p 60.2 16 0.00055 23.4 4.8 58 42-102 10-76 (89)
149 2dhg_A TRNA selenocysteine ass 59.5 35 0.0012 22.5 8.6 65 35-102 6-81 (104)
150 2ywk_A Putative RNA-binding pr 59.5 22 0.00075 23.1 5.5 60 40-102 18-86 (95)
151 2kn4_A Immunoglobulin G-bindin 59.0 38 0.0013 24.5 7.3 61 39-102 71-141 (158)
152 1uaw_A Mouse-musashi-1; RNP-ty 59.0 13 0.00043 23.1 4.0 58 42-102 4-70 (77)
153 3zzy_A Polypyrimidine tract-bi 58.6 26 0.0009 24.9 5.9 64 33-99 21-92 (130)
154 2cpi_A CCR4-NOT transcription 58.5 9.5 0.00033 26.1 3.6 61 39-102 16-92 (111)
155 2rs2_A Musashi-1, RNA-binding 58.1 21 0.00072 24.2 5.3 60 39-101 26-94 (109)
156 2dnm_A SRP46 splicing factor; 57.7 31 0.0011 22.8 6.1 60 40-102 15-84 (103)
157 1x4d_A Matrin 3; structural ge 57.4 34 0.0012 23.1 6.1 57 35-93 12-71 (102)
158 2dit_A HIV TAT specific factor 56.9 15 0.00052 25.1 4.4 69 34-102 11-93 (112)
159 2dgt_A RNA-binding protein 30; 56.8 28 0.00097 22.4 5.7 61 39-102 11-73 (92)
160 1p1t_A Cleavage stimulation fa 56.8 30 0.001 22.9 5.9 60 40-102 10-79 (104)
161 2dgu_A Heterogeneous nuclear r 56.1 40 0.0014 22.3 6.4 61 39-102 12-74 (103)
162 1x4g_A Nucleolysin TIAR; struc 56.1 43 0.0015 22.4 6.8 60 40-102 27-90 (109)
163 2adc_A Polypyrimidine tract-bi 56.0 45 0.0015 26.0 7.6 60 41-102 37-101 (229)
164 1whv_A Poly(A)-specific ribonu 55.6 31 0.0011 23.2 5.4 38 56-93 30-68 (100)
165 2fy1_A RNA-binding motif prote 55.4 45 0.0015 22.8 6.7 63 37-102 6-77 (116)
166 1x4b_A Heterogeneous nuclear r 55.4 13 0.00045 25.4 3.9 59 41-102 30-97 (116)
167 2cq4_A RNA binding motif prote 55.3 18 0.00063 24.6 4.6 57 42-101 29-94 (114)
168 2voo_A Lupus LA protein; RNA-b 54.8 20 0.00068 27.4 5.2 58 42-102 113-178 (193)
169 2ytc_A PRE-mRNA-splicing facto 54.8 37 0.0013 21.3 7.6 51 40-93 14-67 (85)
170 1u6f_A Tcubp1, RNA-binding pro 54.7 47 0.0016 23.3 7.0 59 41-102 45-113 (139)
171 2jvo_A Nucleolar protein 3; nu 54.6 27 0.00094 23.6 5.4 59 41-102 34-94 (108)
172 2cqd_A RNA-binding region cont 54.6 29 0.001 23.6 5.7 60 40-102 19-87 (116)
173 2dnh_A Bruno-like 5, RNA bindi 54.4 44 0.0015 22.1 7.2 59 39-100 16-83 (105)
174 2e5j_A Methenyltetrahydrofolat 52.8 45 0.0015 21.7 7.8 59 41-102 22-85 (97)
175 3n9u_C Cleavage and polyadenyl 52.6 34 0.0012 25.1 6.0 57 42-101 59-127 (156)
176 2qfj_A FBP-interacting repress 52.5 55 0.0019 24.8 7.6 59 41-102 31-99 (216)
177 2cqb_A Peptidyl-prolyl CIS-tra 51.6 19 0.00065 23.8 4.1 63 37-102 11-83 (102)
178 2err_A Ataxin-2-binding protei 51.4 16 0.00054 24.8 3.7 60 40-102 31-98 (109)
179 2e5g_A U6 snRNA-specific termi 51.4 34 0.0012 22.2 5.3 59 41-102 11-73 (94)
180 2cpj_A Non-POU domain-containi 51.3 44 0.0015 21.8 6.0 60 40-102 17-80 (99)
181 1jmt_A Splicing factor U2AF 35 51.3 35 0.0012 22.9 5.5 44 59-102 44-97 (104)
182 2la4_A Nuclear and cytoplasmic 51.1 37 0.0013 22.3 5.6 58 41-101 30-91 (101)
183 2cpz_A CUG triplet repeat RNA- 50.9 36 0.0012 23.0 5.6 60 40-102 27-96 (115)
184 1x4a_A Splicing factor, argini 50.7 53 0.0018 21.9 7.4 60 40-102 24-90 (109)
185 2d9o_A DNAJ (HSP40) homolog, s 50.3 54 0.0019 21.9 6.6 47 55-102 31-81 (100)
186 2hzc_A Splicing factor U2AF 65 50.0 42 0.0014 21.1 5.6 59 40-101 8-80 (87)
187 2dgo_A Cytotoxic granule-assoc 50.0 50 0.0017 22.3 6.3 61 39-102 16-86 (115)
188 3r27_A HnRNP L, heterogeneous 49.9 56 0.0019 22.0 7.2 54 37-93 20-76 (100)
189 2cpx_A Hypothetical protein FL 49.3 32 0.0011 23.3 5.1 63 37-102 24-96 (115)
190 2dis_A Unnamed protein product 49.3 55 0.0019 21.7 7.0 60 40-102 10-83 (109)
191 2ad9_A Polypyrimidine tract-bi 48.9 62 0.0021 22.5 6.5 63 37-102 30-98 (119)
192 3p5t_L Cleavage and polyadenyl 48.8 30 0.001 22.3 4.7 58 42-102 5-74 (90)
193 2dng_A Eukaryotic translation 48.2 33 0.0011 22.7 4.9 66 33-102 10-84 (103)
194 2cq1_A PTB-like protein L; RRM 47.0 61 0.0021 21.6 6.4 53 37-92 14-69 (101)
195 2cjk_A Nuclear polyadenylated 46.9 33 0.0011 24.8 5.2 59 41-102 90-157 (167)
196 1wex_A Hypothetical protein (r 46.8 63 0.0022 21.7 6.6 54 37-93 14-70 (104)
197 3md3_A Nuclear and cytoplasmic 46.3 41 0.0014 24.1 5.7 58 42-102 4-70 (166)
198 1wf1_A RNA-binding protein RAL 46.1 57 0.0019 21.8 6.0 61 40-102 29-91 (110)
199 1x4f_A Matrin 3; structural ge 46.0 59 0.002 22.3 6.0 63 37-102 24-93 (112)
200 2lea_A Serine/arginine-rich sp 46.0 46 0.0016 23.5 5.7 59 41-102 50-118 (135)
201 2xs2_A Deleted in azoospermia- 46.0 16 0.00054 24.3 3.0 58 41-102 12-77 (102)
202 2ki2_A SS-DNA binding protein 45.7 31 0.0011 22.1 4.4 57 42-102 5-71 (90)
203 1h2v_Z 20 kDa nuclear CAP bind 45.3 51 0.0018 23.8 6.0 61 39-102 40-110 (156)
204 2kt5_A RNA and export factor-b 45.1 63 0.0021 22.2 6.2 59 41-102 38-105 (124)
205 2do0_A HnRNP M, heterogeneous 44.9 67 0.0023 21.5 6.3 61 39-102 16-85 (114)
206 1l3k_A Heterogeneous nuclear r 44.9 37 0.0013 25.4 5.4 60 39-101 14-82 (196)
207 4f02_A Polyadenylate-binding p 44.9 51 0.0018 25.3 6.2 62 37-101 14-85 (213)
208 3tyt_A Heterogeneous nuclear r 44.3 53 0.0018 25.2 6.1 61 39-102 5-71 (205)
209 2dgp_A Bruno-like 4, RNA bindi 44.0 67 0.0023 21.2 7.0 51 40-93 15-74 (106)
210 1x5t_A Splicing factor 3B subu 43.3 32 0.0011 22.3 4.2 61 39-102 6-77 (96)
211 1x5o_A RNA binding motif, sing 42.9 63 0.0022 21.7 5.9 58 40-100 27-93 (114)
212 2cqg_A TDP-43, TAR DNA-binding 42.7 69 0.0024 21.0 6.4 59 39-101 16-83 (103)
213 2ghp_A U4/U6 snRNA-associated 42.6 39 0.0013 27.4 5.5 61 39-102 42-109 (292)
214 2f3j_A RNA and export factor b 42.4 73 0.0025 23.8 6.5 58 42-102 92-158 (177)
215 2ku7_A MLL1 PHD3-CYP33 RRM chi 42.3 85 0.0029 21.9 7.0 50 41-93 66-124 (140)
216 1l3k_A Heterogeneous nuclear r 41.1 42 0.0014 25.1 5.1 59 41-102 107-174 (196)
217 2e44_A Insulin-like growth fac 41.0 70 0.0024 20.6 8.1 60 40-102 17-83 (96)
218 2khc_A Testis-specific RNP-typ 39.8 52 0.0018 22.3 5.0 57 42-101 44-110 (118)
219 2hgm_A HNRPF protein, heteroge 39.7 65 0.0022 22.6 5.5 60 39-102 43-112 (126)
220 3pgw_S U1-70K; protein-RNA com 39.6 60 0.0021 28.5 6.4 60 40-102 104-173 (437)
221 2j76_E EIF-4B, EIF4B, eukaryot 39.5 53 0.0018 21.6 4.8 57 42-102 23-89 (100)
222 2cpy_A RNA-binding protein 12; 39.3 22 0.00074 24.3 2.9 64 35-101 12-84 (114)
223 1wez_A HnRNP H', FTP-3, hetero 39.2 38 0.0013 22.6 4.0 60 40-103 17-84 (102)
224 2dnr_A Synaptojanin-1; RRM dom 38.9 59 0.002 21.5 4.7 46 57-102 31-77 (91)
225 2cq0_A Eukaryotic translation 38.7 30 0.001 22.9 3.5 60 39-101 16-85 (103)
226 1x4h_A RNA-binding protein 28; 38.6 85 0.0029 20.8 8.1 53 38-93 15-76 (111)
227 2g4b_A Splicing factor U2AF 65 38.5 63 0.0022 23.4 5.6 60 39-101 95-164 (172)
228 2cpd_A Apobec-1 stimulating pr 38.0 81 0.0028 20.4 6.5 61 39-102 16-80 (99)
229 1qm9_A Polypyrimidine tract-bi 36.2 76 0.0026 23.7 5.9 59 42-102 7-70 (198)
230 3pgw_A U1-A; protein-RNA compl 35.4 1.2E+02 0.0041 24.2 7.3 39 55-93 221-263 (282)
231 1fxl_A Paraneoplastic encephal 34.7 77 0.0026 22.6 5.6 57 42-101 6-72 (167)
232 1b7f_A Protein (SXL-lethal pro 34.0 1E+02 0.0034 22.1 6.1 59 40-101 5-73 (168)
233 2dha_A FLJ20171 protein; RRM d 32.7 67 0.0023 22.4 4.6 60 39-101 24-95 (123)
234 2hgn_A Heterogeneous nuclear r 31.4 56 0.0019 23.4 4.1 59 40-102 48-114 (139)
235 2qfj_A FBP-interacting repress 31.0 1.1E+02 0.0038 23.0 6.2 59 41-102 128-196 (216)
236 1wel_A RNA-binding protein 12; 30.6 93 0.0032 21.3 5.1 60 40-102 27-95 (124)
237 3tht_A Alkylated DNA repair pr 30.3 2.1E+02 0.0072 24.1 8.0 62 33-96 13-79 (345)
238 2cpe_A RNA-binding protein EWS 30.1 53 0.0018 22.0 3.7 60 40-102 17-94 (113)
239 3pgw_A U1-A; protein-RNA compl 29.6 87 0.003 25.1 5.5 64 39-102 10-81 (282)
240 2e5i_A Heterogeneous nuclear r 29.5 1.3E+02 0.0044 21.0 5.7 56 42-100 29-89 (124)
241 2cqh_A IGF-II mRNA-binding pro 29.1 91 0.0031 19.8 4.6 62 38-102 8-74 (93)
242 1ufw_A Synaptojanin 2; RNP dom 28.2 82 0.0028 21.0 4.0 46 57-102 40-86 (95)
243 4f02_A Polyadenylate-binding p 28.1 1.2E+02 0.004 23.1 5.8 58 41-101 106-171 (213)
244 3q2s_C Cleavage and polyadenyl 27.9 1E+02 0.0034 24.2 5.4 57 42-101 72-140 (229)
245 2lmi_A GRSF-1, G-rich sequence 27.8 1.2E+02 0.0041 20.0 5.2 61 39-102 12-83 (107)
246 3nmr_A Cugbp ELAV-like family 26.7 1.8E+02 0.006 20.8 7.1 51 40-93 97-155 (175)
247 1b7f_A Protein (SXL-lethal pro 26.4 1.7E+02 0.006 20.7 6.4 58 40-100 91-158 (168)
248 2hgl_A HNRPF protein, heteroge 26.3 46 0.0016 23.8 2.8 58 41-101 47-115 (136)
249 3md3_A Nuclear and cytoplasmic 26.3 1.2E+02 0.0043 21.4 5.4 60 40-102 89-158 (166)
250 1wf0_A TDP-43, TAR DNA-binding 26.0 65 0.0022 20.4 3.4 48 40-90 7-58 (88)
251 2g4b_A Splicing factor U2AF 65 25.9 1.5E+02 0.005 21.3 5.8 59 41-102 7-79 (172)
252 2ek1_A RNA-binding protein 12; 24.7 34 0.0012 22.1 1.8 60 40-102 17-86 (95)
253 2cq2_A Hypothetical protein LO 24.4 1.7E+02 0.006 20.0 7.6 58 36-96 23-86 (114)
254 2dgw_A Probable RNA-binding pr 23.9 1.4E+02 0.0048 18.8 4.9 60 39-102 11-78 (91)
255 3dxb_A Thioredoxin N-terminall 23.6 1.5E+02 0.0052 22.7 5.7 47 56-102 144-204 (222)
256 2yh0_A Splicing factor U2AF 65 23.4 1.3E+02 0.0043 22.3 5.1 58 42-102 118-185 (198)
257 1b35_D CRPV, protein (cricket 22.9 40 0.0014 19.2 1.5 11 38-48 29-39 (57)
258 2db1_A Heterogeneous nuclear r 21.9 48 0.0016 22.7 2.1 58 41-101 20-88 (118)
259 2fc9_A NCL protein; structure 21.8 54 0.0018 21.5 2.3 65 35-102 12-82 (101)
260 1fxl_A Paraneoplastic encephal 21.4 2.2E+02 0.0075 20.0 7.1 59 41-102 91-159 (167)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=100.00 E-value=2.9e-34 Score=263.32 Aligned_cols=270 Identities=22% Similarity=0.319 Sum_probs=189.3
Q ss_pred CCCCCCCCCCCCCcccccccccCCC-cchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcch
Q 021610 28 GKRFKLPPGPLPVPVFGNWLQVGDD-LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVV 106 (310)
Q Consensus 28 ~~~~~~ppgP~~~pilGn~~~l~~~-~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~ 106 (310)
+++.++||||+++|++||++++... .+|..+.+|+++||++|++++|+.++|||+||++++++|.+++..|++||....
T Consensus 4 ~~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~ 83 (494)
T 3swz_A 4 KTGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMAT 83 (494)
T ss_dssp --------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHH
T ss_pred CCCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHH
Confidence 3456789999999999999998653 368899999999999999999999999999999999999999999999997665
Q ss_pred hhhhcCCCceeEeccCChhHHHHHhhhcccCCCh--HHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHH
Q 021610 107 FDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTN--KVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYN 184 (310)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~--~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (310)
.+.+..++.+++++.+|+.|+++||++. +.|+. ..++.+.+.+++++..+++.|.+.. +..++....+..++++
T Consensus 84 ~~~~~~~~~gl~~~~~g~~wr~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~---~~~vd~~~~~~~~t~d 159 (494)
T 3swz_A 84 LDIASNNRKGIAFADSGAHWQLHRRLAM-ATFALFKDGDQKLEKIICQEISTLCDMLATHN---GQSIDISFPVFVAVTN 159 (494)
T ss_dssp HHHHTTTTCSSSSSCSSHHHHHHHHHHH-HHTTTTSSSTTCHHHHHHHHHHHHHHHHHHTT---TEEECCHHHHHHHHHH
T ss_pred HHHhccCCCCeEeCCCCHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHHcC---CCcccHHHHHHHHHHH
Confidence 5555444556667778999999999875 77763 3466788999999999999997632 2245666777788889
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021610 185 NMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKL 264 (310)
Q Consensus 185 ~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 264 (310)
+|+.++||.+++.. ++....+..+...+..... ...+.+++|+++.+.....+.... ..+.+..+++.+++++++.
T Consensus 160 vi~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~P~l~~~p~~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 235 (494)
T 3swz_A 160 VISLICFNTSYKNG-DPELNVIQNYNEGIIDNLS--KDSLVDLVPWLKIFPNKTLEKLKS-HVKIRNDLLNKILENYKEK 235 (494)
T ss_dssp HHHHHHHSCCCCTT-CTHHHHHHHHHHHHHHHHC--SSSSCCSSCGGGTSCCSHHHHHHH-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCcCCCC-CHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 99999999988653 3433333332222211111 223457788887332221122211 2234556677777777652
Q ss_pred hhcccCCCcchhcHHHHHHhhhc------------CCCCCHHHHHHHHHHHhhccccC
Q 021610 265 ASTKSMSNESLKCAIDHILDAQT------------KGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 265 ~~~~~~~d~~~~~ll~~ll~~~~------------~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.. +..+.|+++.|++... ...+++++|..++.++++||++|
T Consensus 236 ~~-----~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 288 (494)
T 3swz_A 236 FR-----SDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVET 288 (494)
T ss_dssp CC-----TTCCCSHHHHHHHHHHTSCCC----CCSSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred hc-----ccchhHHHHHHHHHHHhhhcccccccccccccCHHHHHHHHHHHhhcchhH
Confidence 11 1234579999997531 11489999999999999999875
No 2
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.98 E-value=2e-31 Score=243.19 Aligned_cols=268 Identities=20% Similarity=0.281 Sum_probs=181.4
Q ss_pred CCCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchh
Q 021610 28 GKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF 107 (310)
Q Consensus 28 ~~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~ 107 (310)
+++.++||||+++|++||++++..+.++..+.+|+++||++|++++|+.++|+++||++++++|.+++..|++|+.....
T Consensus 6 ~~~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~ 85 (476)
T 3e6i_A 6 SSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAF 85 (476)
T ss_dssp ----CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGG
T ss_pred cCCCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchh
Confidence 34457899999999999999986555788999999999999999999999999999999999999988889998765555
Q ss_pred hhhcCCCceeEeccCChhHHHHHhhhcccCCChHHH--HHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHH
Q 021610 108 DIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVV--QQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNN 185 (310)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (310)
..+.++ .++..+|+.|+++||++. +.|+...+ +.+.+.+.++++++++.|.+.. +..++....+..+++++
T Consensus 86 ~~~~~~---~l~~~~g~~w~~~Rr~~~-~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~---~~~~d~~~~~~~~~~dv 158 (476)
T 3e6i_A 86 HAHRDR---GIIFNNGPTWKDIRRFSL-TTLRNYGMGKQGNESRIQREAHFLLEALRKTQ---GQPFDPTFLIGCAPCNV 158 (476)
T ss_dssp GGGTTS---SSTTCCSTTHHHHHHHHH-HHHHHTC-CCSHHHHHHHHHHHHHHHHHHTTT---TSCBCTHHHHTHHHHHH
T ss_pred heecCC---CEEecCCcHHHHHHHHHH-HHHHhcCCCchHHHHHHHHHHHHHHHHHHHhC---CCCcChHHHHHHHHHHH
Confidence 555443 366788999999999753 44443222 3456888999999999997642 23466667777888899
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHhhhhhhccccccccccc-ccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021610 186 MYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP-ILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKL 264 (310)
Q Consensus 186 i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 264 (310)
|++++||.+++..++........+...+...... .....+.+| +++.+... .+.... ..+.+..++...|++|++.
T Consensus 159 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~lp~~-~~~~~~-~~~~~~~~~~~~i~~~~~~ 235 (476)
T 3e6i_A 159 IADILFRKHFDYNDEKFLRLMYLFNENFHLLSTP-WLQLYNNFPSFLHYLPGS-HRKVIK-NVAEVKEYVSERVKEHHQS 235 (476)
T ss_dssp HHHHHHSCCCCTTCHHHHHHHHHHHHHHHHTTSH-HHHHHHHSHHHHTTSCSH-HHHHHH-HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHcCcH-HHHHHH-HHHHHHHHHHHHHHHHhhc
Confidence 9999999988764332222222222111111111 011224455 33322111 111111 1234566777788877752
Q ss_pred hhcccCCCcchhcHHHHHHhhhc------CCCCCHHHHHHHHHHHhhccccC
Q 021610 265 ASTKSMSNESLKCAIDHILDAQT------KGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 265 ~~~~~~~d~~~~~ll~~ll~~~~------~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.. ++.+.|+++.|++... +..++++++..++.++++||++|
T Consensus 236 ~~-----~~~~~d~~~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 282 (476)
T 3e6i_A 236 LD-----PNCPRDLTDCLLVEMEKEKHSAERLYTMDGITVTVADLFFAGTET 282 (476)
T ss_dssp CC-----TTSCCSHHHHHHHHHHSSSSCSSCSCCHHHHHHHHHHHHHHHHHH
T ss_pred CC-----CCCCccHHHHHHHHHHhcccCCCCCcCHHHHHHHHHHHHhcchHH
Confidence 11 1224579999986431 12589999999999999999874
No 3
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.98 E-value=1.5e-31 Score=245.80 Aligned_cols=263 Identities=12% Similarity=0.162 Sum_probs=181.7
Q ss_pred CCCCCCCCCCCcccccccccCCC---cchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcch
Q 021610 30 RFKLPPGPLPVPVFGNWLQVGDD---LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVV 106 (310)
Q Consensus 30 ~~~~ppgP~~~pilGn~~~l~~~---~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~ 106 (310)
+.+.||||+++|++||++++... ..+..+.+|+++||++|++++|+.++|+++||++++++|.+ ..|++|+....
T Consensus 43 ~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~~ 120 (503)
T 3s79_A 43 GTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSKL 120 (503)
T ss_dssp --CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCHH
T ss_pred ccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhhh
Confidence 34579999999999999887431 13457889999999999999999999999999999999954 46888875433
Q ss_pred hhhhc-CCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHH
Q 021610 107 FDIFT-GKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNN 185 (310)
Q Consensus 107 ~~~~~-~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (310)
..... ..+.++++..+|+.|+++||++. +.|+.+.++.+.+.+.+++.++++.|.+.... ++.++....+..++.++
T Consensus 121 ~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~-~~~vdl~~~~~~~~~~v 198 (503)
T 3s79_A 121 GLQCIGMHEKGIIFNNNPELWKTTRPFFM-KALSGPGLVRMVTVCAESLKTHLDRLEEVTNE-SGYVDVLTLLRRVMLDT 198 (503)
T ss_dssp HHHHHTCTTSSSTTCCCHHHHHHHHHHHH-HHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCT-TSCBCHHHHHHHHHHHH
T ss_pred hhhhhccCCCceeeCCCccHHHHHHHhhh-HhhChHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEcHHHHHHHHHHHH
Confidence 32222 23445667788999999999875 89999999999999999999999998764322 23566777788888899
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccch-hhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021610 186 MYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFL-RGYLKICKEVKERRLQLFKDYFVEERKKL 264 (310)
Q Consensus 186 i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 264 (310)
+++++||.+++. ++....+..+....... .. ..++++.+ ++. +.+.+ ..+.+..+++.+|++|++.
T Consensus 199 i~~~~fG~~~~~--~~~~~~~~~~~~~~~~~---~~--~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~ 265 (503)
T 3s79_A 199 SNTLFLRIPLDE--SAIVVKIQGYFDAWQAL---LI--KPDIFFKI-SWLYKKYEK-----SVKDLKDAIEVLIAEKRRR 265 (503)
T ss_dssp HHHHHTCCCCCH--HHHHHHHHHHHHHHHHH---TT--CCHHHHHS-GGGTHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccCc--hhHHHHHHHHHHHHHHH---hc--CcHHHhhc-chhHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 999999987742 22222222221111111 10 01221111 221 22111 1234566777888877763
Q ss_pred hhcccCCCcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 265 ASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 265 ~~~~~~~d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
...+. ......|+++.|++..+++.++++++...+.++++||++|
T Consensus 266 ~~~~~-~~~~~~d~l~~ll~~~~~~~l~~~~i~~~~~~~~~AG~~T 310 (503)
T 3s79_A 266 ISTEE-KLEECMDFATELILAEKRGDLTRENVNQCILEMLIAAPDT 310 (503)
T ss_dssp HHTCT-TTTTTCCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhccc-ccchHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHcccH
Confidence 22111 1122357999999876666799999999999999999874
No 4
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.97 E-value=2.4e-32 Score=250.57 Aligned_cols=264 Identities=16% Similarity=0.244 Sum_probs=178.5
Q ss_pred cCCCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcch
Q 021610 27 RGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVV 106 (310)
Q Consensus 27 ~~~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~ 106 (310)
+.++.++||||++ ++++....++..+.+|+++||++|++++|+.++|+++||++++++|.+++..|++|+....
T Consensus 24 ~~~~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~ 97 (496)
T 3qz1_A 24 KLRNLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPS 97 (496)
T ss_dssp -----CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTT
T ss_pred hccCCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcch
Confidence 3455678999987 5555455588999999999999999999999999999999999999999889999986554
Q ss_pred hhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHH
Q 021610 107 FDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNM 186 (310)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i 186 (310)
......++.++++..+|+.|+++||++. +.|+++.++.+.+.++++++++++.|.+.. +..++....+..++.++|
T Consensus 98 ~~~~~~~~~~l~~~~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l~~~~---~~~vd~~~~~~~~~~dvi 173 (496)
T 3qz1_A 98 YKLVSQRCQDISLGDYSLLWKAHKKLTR-SALLLGTRSSMEPWVDQLTQEFCERMRVQA---GAPVTIQKEFSLLTCSII 173 (496)
T ss_dssp TTTSCTTCCCSSSSCCSHHHHHHHHHHH-HHHHC--CCCHHHHHHHHHHHHHHHHHTTC---SCCCHHHHHHTHHHHHHT
T ss_pred HHHhcCCCCceEECCCCHHHHHHHHHHH-HHHhhccHhhHHHHHHHHHHHHHHHHHhcC---CCccCHHHHHHHHHHHHH
Confidence 4433332224555445999999999875 788877777899999999999999998632 235677777888888999
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 021610 187 YRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLAS 266 (310)
Q Consensus 187 ~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~ 266 (310)
++++||. .+++....+.................+.+++|+++.+.....+.... ..+.+..++..++++|++...
T Consensus 174 ~~~~fG~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~ 248 (496)
T 3qz1_A 174 CYLTFGN----KEDTLVHAFHDCVQDLMKTWDHWSIQILDMVPFLRFFPNPGLWRLKQ-AIENRDHMVEKQLRRHKESMV 248 (496)
T ss_dssp TTTSTTC----CCHHHHHHHHHHHHTTTTTTSSHHHHHHHHCGGGCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhcCC----CCChHHHHHHHHHHHHHHHhccchhHHHHhHHHHHhCChHHHHHHHH-HHHHHHHHHHHHHHHHHhhcc
Confidence 9999998 22333222222111111111110012345678776332111111211 224456677788887776221
Q ss_pred cccCCCcchhcHHHHHHhhhcC-------CCCCHHHHHHHHHHHhhccccC
Q 021610 267 TKSMSNESLKCAIDHILDAQTK-------GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 267 ~~~~~d~~~~~ll~~ll~~~~~-------~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
. +...|+++.|++...+ +.++++++..++.++++||++|
T Consensus 249 ~-----~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dT 294 (496)
T 3qz1_A 249 A-----GQWRDMTDYMLQGVGRQRVEEGPGQLLEGHVHMSVVDLFIGGTET 294 (496)
T ss_dssp S-----SCCSSSHHHHTTSSTTCCC-----CCCTHHHHHHHHHHHHHHHHH
T ss_pred C-----CCccchHHHHHHHHHhccccCCcccccHHHHHHHHHHHHHhhhHH
Confidence 1 2345699999975421 1699999999999999999875
No 5
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.9e-31 Score=245.19 Aligned_cols=269 Identities=24% Similarity=0.332 Sum_probs=169.1
Q ss_pred CCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhh
Q 021610 30 RFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI 109 (310)
Q Consensus 30 ~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~ 109 (310)
+.++||||+++|++||++++..+ ++..+.+|+++||++|++++|+.++|+|+||++++++|.+++..|++|+.......
T Consensus 7 ~~~~pPgP~~~P~iG~~~~~~~~-~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~ 85 (507)
T 3pm0_A 7 SKGKPPGPFAWPLIGNAAAVGQA-AHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFRV 85 (507)
T ss_dssp ---------------------CC-HHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHHH
T ss_pred CCCCCcCCCCCCeeCchhhcCcc-HHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHHh
Confidence 45689999999999999998754 78899999999999999999999999999999999999999889999987555444
Q ss_pred hcCCCceeEeccCChhHHHHHhhhcccCCChHH------HHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHH
Q 021610 110 FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKV------VQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMY 183 (310)
Q Consensus 110 ~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~------~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~ 183 (310)
.. .+.+++++.+|+.|+++||++. +.|+... ++.+.+.+.++++++++.|.+.... +..++....+..+++
T Consensus 86 ~~-~g~~l~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~-~~~vd~~~~~~~~~~ 162 (507)
T 3pm0_A 86 VS-GGRSMAFGHYSEHWKVQRRAAH-SMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSAD-GAFLDPRPLTVVAVA 162 (507)
T ss_dssp GG-GGTCSSSSCSSHHHHHHHHHHH-HHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGG-GCCBCCHHHHHHHHH
T ss_pred hc-CCCceEECCCChHHHHHHHHHH-HHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhccc-CCCcChHHHHHHHHH
Confidence 33 2345557778999999999874 5443222 3448889999999999999865432 235666777888888
Q ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhh---HHHHHHHHHHHHHhHHHHHHHHH
Q 021610 184 NNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRG---YLKICKEVKERRLQLFKDYFVEE 260 (310)
Q Consensus 184 ~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~ 260 (310)
++|+.++||.+++..+ +....+............ .....+++|+++.+... ..+.... ..+.+..++...+++
T Consensus 163 dvi~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~P~l~~lp~~~~~~~~~~~~-~~~~~~~~~~~~i~~ 238 (507)
T 3pm0_A 163 NVMSAVCFGCRYSHDD-PEFRELLSHNEEFGRTVG--AGSLVDVMPWLQYFPNPVRTVFREFEQ-LNRNFSNFILDKFLR 238 (507)
T ss_dssp HHHHHHHTSCCCCTTC-HHHHHHTSCHHHHHHHHS--TTCCTTTCGGGGGSCSHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccCCCCC-HHHHHHHHHHHHHHHhcc--cchHHHHhHHHHHcCchhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999887543 332222111111111111 12344667877632211 1111111 223455667777777
Q ss_pred HHhhhhcccCCCcchhcHHHHHHhhhc---CC-------CCCHHHHHHHHHHHhhccccC
Q 021610 261 RKKLASTKSMSNESLKCAIDHILDAQT---KG-------EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 261 r~~~~~~~~~~d~~~~~ll~~ll~~~~---~~-------~~~~e~i~~~~~~l~~aG~~~ 310 (310)
|++.... ++.+.|+++.|++..+ ++ .+++++|..++.++++||++|
T Consensus 239 ~~~~~~~----~~~~~d~l~~ll~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dT 294 (507)
T 3pm0_A 239 HCESLRP----GAAPRDMMDAFILSAEKKAAGDSHGGGARLDLENVPATITDIFGASQDT 294 (507)
T ss_dssp HHHHCCT----TCCCCSHHHHHHHHHHHHHSCC----CCCCCGGGHHHHHHHHHHHHHHH
T ss_pred HHhcccc----ccCCccHHHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHhcccch
Confidence 7652211 1234569999985421 11 499999999999999999874
No 6
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.97 E-value=4.1e-32 Score=248.38 Aligned_cols=261 Identities=18% Similarity=0.223 Sum_probs=177.8
Q ss_pred CCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhc-CcccCCCCCcchhhhhc
Q 021610 33 LPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQ-GVEFGSRTRNVVFDIFT 111 (310)
Q Consensus 33 ~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~-~~~f~~R~~~~~~~~~~ 111 (310)
.||||+++|++||++++.+. ++..+.+|+++||++|++++|+.++|+|+||++++++|.++ ...|++|+...... ..
T Consensus 15 ~~PGP~~~PliGn~~~~~~~-~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~-~~ 92 (485)
T 3nxu_A 15 GIPGPTPLPFLGNILSYHKG-FCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVG-FM 92 (485)
T ss_dssp TCCCCCCBTTTBTGGGGGGC-HHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCG-GG
T ss_pred CCCCCCCcCeecCcHHhhcC-hHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCccccccc-cc
Confidence 37999999999999998654 78889999999999999999999999999999999999987 67888887543322 23
Q ss_pred CCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHHHHh
Q 021610 112 GKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMF 191 (310)
Q Consensus 112 ~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f 191 (310)
+.+ ++..+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+.... +..++....+..++.++|+.++|
T Consensus 93 ~~~---l~~~~g~~w~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~-g~~~d~~~~~~~~~~dvi~~~~f 167 (485)
T 3nxu_A 93 KSA---ISIAEDEEWKRLRSLL-SPTFTSGKLKEMVPIIAQYGDVLVRNLRREAET-GKPVTLKDVFGAYSMDVITSTSF 167 (485)
T ss_dssp GGS---TTTCCHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEEHHHHHHHHHHHHHHHHHH
T ss_pred ccC---ccccCCcHHHHHHhhc-ChhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCcCcHHHHHHHHHHHHHHHHHc
Confidence 333 6778999999999987 589999999999999999999999999754322 23566777788888899999999
Q ss_pred ccccCCCCchHHHHHHHHHHHhhhhhhcc-c---ccccccccccccchhhHH-HHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 021610 192 DRRFESQDDPLFNRLKALNGERSRLAQSF-E---YNYGDFIPILRPFLRGYL-KICKEVKERRLQLFKDYFVEERKKLAS 266 (310)
Q Consensus 192 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~d~~P~l~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~r~~~~~ 266 (310)
|.+++..+++.......+. .+.... . ....+.+|++.+..+... ........+.+..+++.+++++... .
T Consensus 168 G~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 242 (485)
T 3nxu_A 168 GVNIDSLNNPQDPFVENTK----KLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLED-T 242 (485)
T ss_dssp SCCCCGGGCTTCHHHHHHT----TSCCCCTTSHHHHHHHHCTTHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHC-C
T ss_pred CCccccccCCCcHHHHHHH----HHhchhhHHHHHHHHHHhhhhHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhc-c
Confidence 9988653222111111111 111100 0 011234555432211100 0000011122334445555554331 1
Q ss_pred cccCCCcchhcHHHHHHhhhc------CCCCCHHHHHHHHHHHhhccccC
Q 021610 267 TKSMSNESLKCAIDHILDAQT------KGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 267 ~~~~~d~~~~~ll~~ll~~~~------~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.+...|+++.|++... ...++++++..++.++++||++|
T Consensus 243 -----~~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~AG~dT 287 (485)
T 3nxu_A 243 -----QKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYET 287 (485)
T ss_dssp --------CCCHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcccHHHHHHHhhhccccccccCCCHHHHHHHHHHHHHHhhHH
Confidence 1234569999997642 22599999999999999999875
No 7
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.97 E-value=1.8e-30 Score=236.93 Aligned_cols=270 Identities=21% Similarity=0.296 Sum_probs=173.1
Q ss_pred CCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhh
Q 021610 30 RFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI 109 (310)
Q Consensus 30 ~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~ 109 (310)
+.++||||+++|++||++++..+.++..+.+|+++|||||++++|+.++|||+||+++++||.+++..|++||.....+.
T Consensus 8 ~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~~~ 87 (479)
T 3tbg_A 8 KGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQI 87 (479)
T ss_dssp -CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGGGG
T ss_pred CCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHHHH
Confidence 34699999999999999998766578899999999999999999999999999999999999999999999987666654
Q ss_pred hcC--CCceeEeccCChhHHHHHhhhcccCCChHHHH--HhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHH
Q 021610 110 FTG--KGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQ--QQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNN 185 (310)
Q Consensus 110 ~~~--~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (310)
+.. .+.++++..+|+.|+++|+++. +.|+...+. .+.+.+......+...+.... ...++....+...+.++
T Consensus 88 ~~~~~~~~~~~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~ 163 (479)
T 3tbg_A 88 LGFGPRSQGVFLARYGPAWREQRRFSV-STLRNLGLGKKSLEQWVTEEAACLCAAFANHS---GRPFRPNGLLDKAVSNV 163 (479)
T ss_dssp GTCBTTBCCSTTCCSSHHHHHHHHHHH-HHHHHTTSTTCHHHHHHHHHHHHHHHHHHTTT---TCCBCTHHHHHHHHHHH
T ss_pred hccCCCCCceeeCCCCHHHHHHHHHHH-HHhcchhhhHHHHHHHHHHHHHHHHHHHHhcc---CCcccHHHHHHHHHHHH
Confidence 432 2345567788999999999875 666554433 345556666667766665433 23455566677788899
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 021610 186 MYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLA 265 (310)
Q Consensus 186 i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~ 265 (310)
++.++||.+++..++............. .............+|++..+... ..+... ..+.....++..++++....
T Consensus 164 ~~~~~fg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (479)
T 3tbg_A 164 IASLTCGRRFEYDDPRFLRLLDLAQEGL-KEESGFLREVLNAVPVLLHIPAL-AGKVLR-FQKAFLTQLDELLTEHRMTW 240 (479)
T ss_dssp HHHHHHSCCCCTTCHHHHHHHHHHHHHH-HTTSSHHHHHHHHSGGGGGSHHH-HHHHTH-HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhcCCcccccchhhhhhhhhhhhhh-hhhhhhhhhhhcccchhccchhh-HHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence 9999999998765433222222111111 01000000111223333211111 111111 11223344455555544421
Q ss_pred hcccCCCcchhcHHHHHHhh----h--cCCCCCHHHHHHHHHHHhhccccC
Q 021610 266 STKSMSNESLKCAIDHILDA----Q--TKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 266 ~~~~~~d~~~~~ll~~ll~~----~--~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.. ...+.++++.++.. . ....++++++..++.++++||++|
T Consensus 241 ~~----~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 287 (479)
T 3tbg_A 241 DP----AQPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVT 287 (479)
T ss_dssp CT----TSCCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHHHHHH
T ss_pred hc----ccccchhhhhhhhhhhhcccCCccchhhHHHHHHHHHHHHhhhhh
Confidence 11 12334566666532 1 223699999999999999999875
No 8
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.97 E-value=1.4e-30 Score=237.82 Aligned_cols=273 Identities=23% Similarity=0.281 Sum_probs=173.9
Q ss_pred hhcCCCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCc
Q 021610 25 KLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN 104 (310)
Q Consensus 25 ~~~~~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~ 104 (310)
++++++.++||||+++|++||++++....++..+.+|+++||++|++++|+.++|+++||++++++|.++...|++|+..
T Consensus 4 ~~~~~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~ 83 (477)
T 1r9o_A 4 KTSSGRGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIF 83 (477)
T ss_dssp -----CCBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCC
T ss_pred ccccCCCCCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcc
Confidence 33444456899999999999999874334788899999999999999999999999999999999998887789887643
Q ss_pred chhhhhcCCCceeEeccCChhHHHHHhhhcccCCChH--HHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHH
Q 021610 105 VVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNK--VVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMM 182 (310)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~--~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 182 (310)
..+....+ +.+ ++..+|+.|+++||++. +.|++. .++.+.+.+.++++++++.|.+.. ++.++....+..++
T Consensus 84 ~~~~~~~~-~~~-l~~~~g~~w~~~Rr~~~-~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~---~~~vd~~~~~~~~~ 157 (477)
T 1r9o_A 84 PLAERANR-GFG-IVFSNGKKWKEIRRFSL-MTLRNFGMGKRSIEDRVQEEARCLVEELRKTK---ASPCDPTFILGCAP 157 (477)
T ss_dssp SCCCTTTC-TTS-STTCCHHHHHHHHHHHH-HHHTTSSSCSSCHHHHHHHHHHHHHHHHHTTT---TSCBCTHHHHHHHH
T ss_pred hhhhhccC-CCc-eEecCChHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHHHHhcC---CCccChHHHHHHHH
Confidence 32332222 223 56678999999999864 677765 346788999999999999997642 23466667778888
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021610 183 YNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERK 262 (310)
Q Consensus 183 ~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~ 262 (310)
+++|++++||.+++..+ +.+..+...................+.+|++..++....+.... ..+.+..++..+|++|+
T Consensus 158 ~~vi~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~lp~~~~~~~~-~~~~~~~~~~~~i~~r~ 235 (477)
T 1r9o_A 158 CNVICSIIFHKRFDYKD-QQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYFPGTHNKLLK-NVAFMKSYILEKVKEHQ 235 (477)
T ss_dssp HHHHHHHHHSCCCCTTC-HHHHHHHHHHHHHHHHHTCCBC-------CCCSCCTTCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCcCCCCC-HHHHHHHHHHHHHHHhhccchhHHHhhccHHHHhcchHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 89999999999876533 33222221111111111111112234567633222111111111 12345667788888887
Q ss_pred hhhhcccCCCcchhcHHHHHHhhh---c---CCCCCHHHHHHHHHHHhhccccC
Q 021610 263 KLASTKSMSNESLKCAIDHILDAQ---T---KGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 263 ~~~~~~~~~d~~~~~ll~~ll~~~---~---~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+...+ ..+.|+++.|++.. + ...+|+++|.+++.++++||++|
T Consensus 236 ~~~~~-----~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 284 (477)
T 1r9o_A 236 ESMDM-----NNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTET 284 (477)
T ss_dssp HTCCT-----TCCCSHHHHHHHHHHHHTTSCSCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hccCC-----CCchHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhccccc
Confidence 62111 12356999998532 1 23599999999999999999875
No 9
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.97 E-value=2e-30 Score=236.80 Aligned_cols=268 Identities=13% Similarity=0.193 Sum_probs=179.9
Q ss_pred cCCCCCCCCCCCCCcccccccccC----CCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 27 RGKRFKLPPGPLPVPVFGNWLQVG----DDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 27 ~~~~~~~ppgP~~~pilGn~~~l~----~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
..++.+.+|||+++|++||++++. ...++..+.+|+++||++|++++|+.++|+++||+++++++.++ ..|++|+
T Consensus 19 ~~~pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~~r~ 97 (482)
T 3k9v_A 19 ETRNVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHPQRL 97 (482)
T ss_dssp CCEEGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSCCCC
T ss_pred ccCCCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCCCCC
Confidence 344556789999999999998873 22367889999999999999999999999999999999999874 5788887
Q ss_pred Ccch---hhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH
Q 021610 103 RNVV---FDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ 179 (310)
Q Consensus 103 ~~~~---~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 179 (310)
.... +....+.+ ..++..+|+.|+++||.+...+++++.++.+.+.++++++++++.|.+.....+..++....+.
T Consensus 98 ~~~~~~~~~~~~~~~-~~l~~~~g~~w~~~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g~~vd~~~~~~ 176 (482)
T 3k9v_A 98 EIKPWKAYRDHRNEA-YGLMILEGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELN 176 (482)
T ss_dssp CCHHHHHHHHHHTCC-CCTTTCCHHHHHHHHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTSCCTTHHHHHH
T ss_pred CchHHHHHHHhcCCC-CCceeCCCchHHHHHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 5322 22222223 2367788999999999986444588889999999999999999999864321223467777788
Q ss_pred HHHHHHHHHHHhccccCCCCc---hHHHHHHHHHHHhhhhhhcccccccccccc-cccchh-hHHHHHHHHHHHHHhHHH
Q 021610 180 LMMYNNMYRIMFDRRFESQDD---PLFNRLKALNGERSRLAQSFEYNYGDFIPI-LRPFLR-GYLKICKEVKERRLQLFK 254 (310)
Q Consensus 180 ~~~~~~i~~~~fg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~-l~~~~~-~~~~~~~~~~~~~~~~~~ 254 (310)
.++.++|++++||.++...++ .....+... ...+..... ....+|. +..++. ...+.... ..+.+..+.
T Consensus 177 ~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~p~~~~~~l~~~~~~~~~~-~~~~~~~~~ 250 (482)
T 3k9v_A 177 KWSFESICLVLYEKRFGLLQKETEEEALTFITA---IKTMMSTFG--KMMVTPVELHKRLNTKVWQAHTL-AWDTIFKSV 250 (482)
T ss_dssp HHHHHHHHHHHHSCCCCSSSTTSTTSSHHHHHH---HHHHHTTGG--GGSSSCHHHHHHHTCHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcccccCCCCCCcchHHHHHHHH---HHHHHHHHH--HHHhhhHHHHHhcCCHHHHHHHH-HHHHHHHHH
Confidence 889999999999998853221 111111111 111111111 1122331 111111 11111111 123345566
Q ss_pred HHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 255 DYFVEERKKLASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 255 ~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
..+|++|++.... +...|+++.+++. ..++++++..++.++++||++|
T Consensus 251 ~~~i~~r~~~~~~-----~~~~d~l~~ll~~---~~l~~~ei~~~~~~~~~AG~dT 298 (482)
T 3k9v_A 251 KPCIDNRLQRYSQ-----QPGADFLCDIYQQ---DHLSKKELYAAVTELQLAAVET 298 (482)
T ss_dssp HHHHHHHHHHTTT-----CTTSCHHHHHHHH---TCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-----CCchHHHHHHHhc---cCCCHHHHHHHHHHHHHhhhhh
Confidence 6778877652211 1234588888864 4689999999999999999875
No 10
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.97 E-value=2.8e-30 Score=236.12 Aligned_cols=269 Identities=20% Similarity=0.255 Sum_probs=184.1
Q ss_pred CCCCCCCCCCCcccccccccCCCc--chHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchh
Q 021610 30 RFKLPPGPLPVPVFGNWLQVGDDL--NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF 107 (310)
Q Consensus 30 ~~~~ppgP~~~pilGn~~~l~~~~--~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~ 107 (310)
+.++||||+++|++||++++.... ++..+.+|+++||++|++++|+.++++++||++++++|.+++..|++|+.....
T Consensus 10 ~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~~ 89 (481)
T 3czh_A 10 PMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLF 89 (481)
T ss_dssp --CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHHH
T ss_pred CCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHHH
Confidence 456899999999999998875433 678899999999999999999999999999999999999888889988754444
Q ss_pred hhhcCCCceeEeccCChhHHHHHhhhcccCCChHHH--HHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHH
Q 021610 108 DIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVV--QQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNN 185 (310)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (310)
..+.+ +.++++..+|+.|+++||++. +.|++..+ +.+.+.+.++++++++.|.+.. +..++....+...+.++
T Consensus 90 ~~~~~-~~~~~~~~~g~~w~~~R~~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~---~~~~d~~~~~~~~~~~v 164 (481)
T 3czh_A 90 MKMTK-MGGLLNSRYGRGWVDHRRLAV-NSFRYFGYGQKSFESKILEETKFFNDAIETYK---GRPFDFKQLITNAVSNI 164 (481)
T ss_dssp HHHHT-TCSSTTCCSSHHHHHHHHHHH-HHHHHTTTTSTTHHHHHHHHHHHHHHHHHTTT---TCCBCCHHHHHHHHHHH
T ss_pred HhhcC-CCCeEeCCCChHHHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHHHHcC---CCCcCHHHHHHHHHHHH
Confidence 44433 223455688999999999874 77775433 5688999999999999997642 22466677777888899
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 021610 186 MYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLA 265 (310)
Q Consensus 186 i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~ 265 (310)
|++++||.+++.. ++....+.................+.+++|+++.+.....+... ...+.+..++..+|++|++..
T Consensus 165 i~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~~~~~~~~-~~~~~~~~~~~~~i~~r~~~~ 242 (481)
T 3czh_A 165 TNLIIFGERFTYE-DTDFQHMIELFSENVELAASASVFLYNAFPWIGILPFGKHQQLF-RNAAVVYDFLSRLIEKASVNR 242 (481)
T ss_dssp HHHHHHSSCCCTT-CHHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCSSSHHHHHH-HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCCCCC-CHHHHHHHHHHHHHHhhhccchhHHhhhhHHHHhCCchHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 9999999987643 33332222111111111110000123556776422111111111 122345677888888887621
Q ss_pred hcccCCCcchhcHHHHHHhhhc------CCCCCHHHHHHHHHHHhhccccC
Q 021610 266 STKSMSNESLKCAIDHILDAQT------KGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 266 ~~~~~~d~~~~~ll~~ll~~~~------~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.+ ..+.|+++.|++... ...+++++|..++.++++||++|
T Consensus 243 ~~-----~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~AG~dT 288 (481)
T 3czh_A 243 KP-----QLPQHFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTET 288 (481)
T ss_dssp CT-----TCCSSHHHHHHHHHHHTTTCTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CC-----CchHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHhccch
Confidence 11 223569999996531 12599999999999999999875
No 11
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.97 E-value=2.2e-30 Score=236.47 Aligned_cols=266 Identities=25% Similarity=0.351 Sum_probs=180.7
Q ss_pred CCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhh
Q 021610 29 KRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (310)
Q Consensus 29 ~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~ 108 (310)
++.++||||+++|++||++++....++..+.+|+++||++|++++|+.++|+++||+.+++||.+++..|++|+......
T Consensus 7 ~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~ 86 (476)
T 1po5_A 7 SKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVD 86 (476)
T ss_dssp --CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGC
T ss_pred CCCCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHH
Confidence 34468999999999999998844447889999999999999999999999999999999999988877898876543333
Q ss_pred hhcCCCceeEeccCChhHHHHHhhhcccCCChH--HHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHH
Q 021610 109 IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNK--VVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNM 186 (310)
Q Consensus 109 ~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~--~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i 186 (310)
.+.. +.+ ++..+|+.|+++||++. +.|++. .++.+.+.+.++++++++.|.+.. ++.++....+..+++++|
T Consensus 87 ~~~~-~~~-l~~~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~---~~~~d~~~~~~~~~~~vi 160 (476)
T 1po5_A 87 PIFQ-GYG-VIFANGERWRALRRFSL-ATMRDFGMGKRSVEERIQEEARCLVEELRKSK---GALLDNTLLFHSITSNII 160 (476)
T ss_dssp SCCS-SCC-CCCSSHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTT---TCCBCCHHHHHHHHHHHH
T ss_pred hhcC-CCc-eEecCCcHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHhcC---CCccCHHHHHHHHHHHHH
Confidence 2222 223 56678999999999864 777765 456788999999999999997642 234566677788888999
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHHhhhhhhccc-c--cccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021610 187 YRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFE-Y--NYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKK 263 (310)
Q Consensus 187 ~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~ 263 (310)
++++||.+++.. ++.+..+.. .+........ . ...+.+|++..++....+.... ..+.+..++..+|++|++
T Consensus 161 ~~~~fG~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~P~~~~~lp~~~~~~~~-~~~~~~~~~~~~i~~r~~ 235 (476)
T 1po5_A 161 CSIVFGKRFDYK-DPVFLRLLD---LFFQSFSLISSFSSQVFELFSGFLKHFPGTHRQIYR-NLQEINTFIGQSVEKHRA 235 (476)
T ss_dssp HHHHHSSCCCTT-CHHHHHHHH---HHHHHTTTCCTTHHHHHHHTHHHHHTSSCSHHHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCC-CHHHHHHHH---HHHHHHhhhcchhhHHHHhhhHHHHhcCcHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999988643 333222211 1111111100 0 1123456522111111111111 123456678888888876
Q ss_pred hhhcccCCCcchhcHHHHHHhhhc------CCCCCHHHHHHHHHHHhhccccC
Q 021610 264 LASTKSMSNESLKCAIDHILDAQT------KGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 264 ~~~~~~~~d~~~~~ll~~ll~~~~------~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
...+ ..+.|+++.|++..+ +..+++++|..++.++++||++|
T Consensus 236 ~~~~-----~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 283 (476)
T 1po5_A 236 TLDP-----SNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTET 283 (476)
T ss_dssp TCCT-----TSCCSHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCC-----CCcccHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhcccc
Confidence 2111 123569999985421 12489999999999999999875
No 12
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.97 E-value=4.9e-30 Score=235.34 Aligned_cols=265 Identities=23% Similarity=0.313 Sum_probs=180.4
Q ss_pred CCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcC
Q 021610 33 LPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTG 112 (310)
Q Consensus 33 ~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~ 112 (310)
.+|||+++|++||++++..+ ++..+.+|.++||++|++++|+.++++++||++++++|.+++..|++|+.......+.
T Consensus 17 ~~PgP~~~p~~G~~~~~~~~-~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~~~~- 94 (495)
T 2hi4_A 17 SPPEPWGWPLLGHVLTLGKN-PHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLIT- 94 (495)
T ss_dssp CCCCCCCBTTTBTHHHHTTC-HHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHHTST-
T ss_pred CCCCCCCCcceeeHHhcCcc-HHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHHHhc-
Confidence 34999999999999887654 7888999999999999999999999999999999999998877899887544333332
Q ss_pred CCceeEec-cCChhHHHHHhhhcccCC---ChHHH---H---HhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHH
Q 021610 113 KGQDMVFT-VYGEHWRKMRRIMTVPFF---TNKVV---Q---QQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMM 182 (310)
Q Consensus 113 ~~~~~~~~-~~g~~W~~~Rk~l~~~~f---~~~~~---~---~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 182 (310)
.+.+++++ .+|+.|+++||++. +.| +.... + .+.+.+.++++++++.|.+.... ++.++....+...+
T Consensus 95 ~~~~l~~~~~~g~~w~~~Rr~~~-~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~-~~~~d~~~~~~~~~ 172 (495)
T 2hi4_A 95 DGQSLTFSTDSGPVWAARRRLAQ-NALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAG-PGHFDPYNQVVVSV 172 (495)
T ss_dssp TSCCTTTSSCCSHHHHHHHHHHH-HHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHT-TSCBCHHHHHHHHH
T ss_pred CCCCEEEcCCCChHHHHHHHHHH-HHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccC-CCccchHHHHHHHH
Confidence 23344444 37999999999875 654 33322 2 68899999999999999753211 23466777788888
Q ss_pred HHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021610 183 YNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERK 262 (310)
Q Consensus 183 ~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~ 262 (310)
.++|++++||.+++.. ++....+............ .....+++|+++.+.....+.... ..+.+..++..+|++|+
T Consensus 173 ~dvi~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~l~~lp~~~~~~~~~-~~~~~~~~~~~~i~~r~ 248 (495)
T 2hi4_A 173 ANVIGAMCFGQHFPES-SDEMLSLVKNTHEFVETAS--SGNPLDFFPILRYLPNPALQRFKA-FNQRFLWFLQKTVQEHY 248 (495)
T ss_dssp HHHHHHHHHGGGSCTT-CHHHHHHHTTTHHHHTTSS--TTCGGGTCGGGGGSCCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCC-CHHHHHHHHHHHHHHHhcc--cchHHHHhHHHHhcCchHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 8999999999987643 3332222211111111111 112346678775322111111111 22345677888888887
Q ss_pred hhhhcccCCCcchhcHHHHHHhhh-c----C-CCCCHHHHHHHHHHHhhccccC
Q 021610 263 KLASTKSMSNESLKCAIDHILDAQ-T----K-GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 263 ~~~~~~~~~d~~~~~ll~~ll~~~-~----~-~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+...+ +.+.|+++.|++.. + + ..++++++..++.++++||++|
T Consensus 249 ~~~~~-----~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dT 297 (495)
T 2hi4_A 249 QDFDK-----NSVRDITGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGAGFDT 297 (495)
T ss_dssp HTCCT-----TCCCSHHHHHHHHHHHCCEETTEECCTHHHHTHHHHHHHHHHHH
T ss_pred Hhhcc-----cccccHHHHHHHHhhhccCccccCCCHHHHHHHHHHHHHhhhhh
Confidence 62111 12356999999542 1 1 2589999999999999999875
No 13
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.97 E-value=4.6e-30 Score=234.40 Aligned_cols=268 Identities=22% Similarity=0.307 Sum_probs=183.7
Q ss_pred CCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhh
Q 021610 29 KRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (310)
Q Consensus 29 ~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~ 108 (310)
++.++||||+++|++||++++....++..+.+|+++||++|++++|+.++|+++||+++++||.++...|++|+......
T Consensus 7 ~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~ 86 (476)
T 2fdv_A 7 SKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFD 86 (476)
T ss_dssp -CCBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHH
T ss_pred ccCCCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHh
Confidence 34468999999999999999854457889999999999999999999999999999999999988777898877543333
Q ss_pred hhcCCCceeEeccCChhHHHHHhhhcccCCChHHH--HHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHH
Q 021610 109 IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVV--QQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNM 186 (310)
Q Consensus 109 ~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i 186 (310)
...+ +.+ ++..+|+.|+++||++ .+.|+...+ +.+.+.+.++++++++.|.+.. +..++....+..+++++|
T Consensus 87 ~~~~-~~~-l~~~~g~~~~~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~---~~~vd~~~~~~~~~~~vi 160 (476)
T 2fdv_A 87 WVFK-GYG-VVFSNGERAKQLRRFS-IATLRDFGVGKRGIEERIQEEAGFLIDALRGTG---GANIDPTFFLSRTVSNVI 160 (476)
T ss_dssp HHHT-TCS-SSSCCHHHHHHHHHHH-HHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHTT---TCCBCCHHHHHHHHHHHH
T ss_pred hhcC-CCC-eEecCchHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHhcC---CCccChHHHHHHHHHHHH
Confidence 3322 233 5567899999999987 478877655 7789999999999999997532 234566677788888999
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccc-cccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 021610 187 YRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPI-LRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLA 265 (310)
Q Consensus 187 ~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~ 265 (310)
++++||.+++.. ++....+...................+.+|+ ++.+... .+.... ..+.+..++..+|++|++..
T Consensus 161 ~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~-~~~~~~-~~~~~~~~~~~~i~~r~~~~ 237 (476)
T 2fdv_A 161 SSIVFGDRFDYK-DKEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHLPGP-QQQAFQ-LLQGLEDFIAKKVEHNQRTL 237 (476)
T ss_dssp HHHHHSSCCCTT-CHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTSCSH-HHHHHH-HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCcCCCC-CHHHHHHHHHHHHHHHhhcccccchhhhhhhHHHhcCcH-HHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 999999988743 3332222211111111101000011234565 3211111 111111 22345677888888877621
Q ss_pred hcccCCCcchhcHHHHHHhhhc------CCCCCHHHHHHHHHHHhhccccC
Q 021610 266 STKSMSNESLKCAIDHILDAQT------KGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 266 ~~~~~~d~~~~~ll~~ll~~~~------~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.+ +.+.|+++.|++..+ +..+++++|..++.++++||++|
T Consensus 238 ~~-----~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 283 (476)
T 2fdv_A 238 DP-----NSPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLNLFIGGTET 283 (476)
T ss_dssp CT-----TSCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHHHHHH
T ss_pred CC-----CCCccHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHhcccc
Confidence 11 223569999996531 23599999999999999999874
No 14
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.97 E-value=7.3e-30 Score=231.15 Aligned_cols=261 Identities=17% Similarity=0.215 Sum_probs=186.6
Q ss_pred CCCCCCCC-CcccccccccCCCcchHHHHHHHHhhC-CeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhh
Q 021610 32 KLPPGPLP-VPVFGNWLQVGDDLNHRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI 109 (310)
Q Consensus 32 ~~ppgP~~-~pilGn~~~l~~~~~~~~~~~~~~~yG-~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~ 109 (310)
++||||++ +|++||++++..+ ++..+.+|+++|| ++|++++|+.++||++||++++++|.+++..|++|+.......
T Consensus 3 ~~PPg~p~~~P~iG~~~~~~~~-~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~ 81 (450)
T 3gw9_A 3 KLPPVYPVTVPILGHIIQFGKS-PLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMVP 81 (450)
T ss_dssp SCCCBCCCCSTTTBTHHHHHHC-HHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGHH
T ss_pred CCCCCCCCCcchhccHHHHccC-HHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHHH
Confidence 57999765 9999999988654 7889999999999 9999999999999999999999999998888988875444444
Q ss_pred hcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHH-HHhcCcccccCChhHHHHHHHHHHHHHHH
Q 021610 110 FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVE-DVKKDPEAATNGIVLRRRLQLMMYNNMYR 188 (310)
Q Consensus 110 ~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~-~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (310)
+.|.+ +++..+|+.|+++||++ .+.|+++.++.+.+.+++++.++++ .|.+. ++.++....+...+.+++++
T Consensus 82 ~~g~~--~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~----~~~vd~~~~~~~~~~~~i~~ 154 (450)
T 3gw9_A 82 VFGEG--VAYAAPYPRMREQLNFL-AEELTIAKFQNFVPAIQHEVRKFMAANWDKD----EGEINLLEDCSTMIINTACQ 154 (450)
T ss_dssp HHCTT--SGGGSCHHHHHHHHHHH-HHTTSGGGCTTHHHHHHHHHHHHHHHHSCSS----EEEEEHHHHHHHHHHHHHHH
T ss_pred HhcCC--cccCCCcHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhccC----CCcccHHHHHHHHHHHHHHH
Confidence 45433 45667899999999987 5899999999999999999999999 66532 12466677788888899999
Q ss_pred HHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcc
Q 021610 189 IMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTK 268 (310)
Q Consensus 189 ~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ 268 (310)
++||.+++...+ ...+...... +... .....+++|+++.+.....+... ...+.+..++..++++|++....
T Consensus 155 ~~fG~~~~~~~~--~~~~~~~~~~---~~~~-~~~~~~~~P~l~~lp~~~~~~~~-~~~~~~~~~~~~~i~~r~~~~~~- 226 (450)
T 3gw9_A 155 CLFGEDLRKRLD--ARRFAQLLAK---MESS-LIPAAVFLPILLKLPLPQSARCH-EARTELQKILSEIIIARKEEEVN- 226 (450)
T ss_dssp HHSCHHHHHHSC--HHHHHHHHHH---HHHT-CCGGGGTCGGGGGSCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHcCcchhhhhh--hHHHHHHHHH---HHhc-cccchhcccchhccCCchhHHHH-HHHHHHHHHHHHHHHHHHHhhcc-
Confidence 999987754221 1111111111 1111 11233567777522111111111 12244566777888877752211
Q ss_pred cCCCcchhcHHHHHHhhhc-C-CCCCHHHHHHHHHHHhhccccC
Q 021610 269 SMSNESLKCAIDHILDAQT-K-GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 269 ~~~d~~~~~ll~~ll~~~~-~-~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
++..+.|+++.|++... + ..++++++..++.++++||++|
T Consensus 227 --~~~~~~d~l~~ll~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 268 (450)
T 3gw9_A 227 --KDSSTSDLLSGLLSAVYRDGTPMSLHEVCGMIVAAMFAGQHT 268 (450)
T ss_dssp --TSCCCCSHHHHHHHCBCTTSCBCCHHHHHHHHHHHHHHHHHH
T ss_pred --cCCccchHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhH
Confidence 12334679999998642 2 2599999999999999999874
No 15
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.96 E-value=1.7e-29 Score=229.69 Aligned_cols=253 Identities=16% Similarity=0.237 Sum_probs=180.2
Q ss_pred CCCCCCCC-CcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcc-hhhh
Q 021610 32 KLPPGPLP-VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-VFDI 109 (310)
Q Consensus 32 ~~ppgP~~-~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~-~~~~ 109 (310)
+.||||++ +|+|||++++.++ ++..+.+|+++|||||++++|+.++|+|+||+++++++.+++..|+.|+... ....
T Consensus 11 ~~PP~~~~~lP~iG~~~~~~~~-~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~ 89 (461)
T 3ld6_A 11 KSPPYIFSPIPFLGHAIAFGKS-PIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTP 89 (461)
T ss_dssp CCCCBCCCSSTTTBTHHHHHHC-HHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHH
T ss_pred CCCCCCCCCcCeeeeHHHhhhC-HHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhhc
Confidence 45777764 9999999998665 8899999999999999999999999999999999999999888888876322 2223
Q ss_pred hcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHHH
Q 021610 110 FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRI 189 (310)
Q Consensus 110 ~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 189 (310)
..| .++++..+|+.|+++|+++ .+.|+.+.++.+.+.++++++++++.|.+.. .++....+...+.++++.+
T Consensus 90 ~~g--~~~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~ 161 (461)
T 3ld6_A 90 VFG--KGVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGESG-----EKNVFEALSELIILTASHC 161 (461)
T ss_dssp HHC--TTSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCSEE-----EEEHHHHHHHHHHHHHHHH
T ss_pred cCC--CccccCCCcHHHHHHHHhc-cccccHHHHhhhhHHHHHHHHHHHHHHhhcC-----CccHHHHHHHHHHHHHHHH
Confidence 333 3456778899999999987 5899999999999999999999999886432 2445566777788999999
Q ss_pred HhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccc
Q 021610 190 MFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKS 269 (310)
Q Consensus 190 ~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~ 269 (310)
+||.++....++....... . +...+. .....+|.+.+... +.+ .. ...+.+..++...|++|+. +.
T Consensus 162 ~fG~~~~~~~~~~~~~~~~---~---~~~~~~-~~~~~~~~~~~~~~-~~~-~~-~~~~~l~~~~~~~i~~r~~--~~-- 227 (461)
T 3ld6_A 162 LHGKEIRSQLNEKVAQLYA---D---LDGGFS-HAAWLLPGWLPLPS-FRR-RD-RAHREIKDIFYKAIQKRRQ--SQ-- 227 (461)
T ss_dssp HTCHHHHHTCCHHHHHHHH---H---HHTTSS-HHHHHSCTTSCCHH-HHH-HH-HHHHHHHHHHHHHHHHHTT--CC--
T ss_pred HcCcchhhhhhhhhhhhhh---h---hhhhhh-hHHHhhhhhccCcH-HHH-HH-HHHHHHHHHHHHHHHHHHh--cC--
Confidence 9998876544443222111 1 111111 11122343333211 111 11 1223456667777877765 22
Q ss_pred CCCcchhcHHHHHHhhhc-CC-CCCHHHHHHHHHHHhhccccC
Q 021610 270 MSNESLKCAIDHILDAQT-KG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 270 ~~d~~~~~ll~~ll~~~~-~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+...|+++.|+++.. ++ .+|+++|..++.++++||++|
T Consensus 228 ---~~~~d~l~~ll~~~~~~~~~ls~~ei~~~~~~~~~aG~dT 267 (461)
T 3ld6_A 228 ---EKIDDILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHT 267 (461)
T ss_dssp ---CCCCSHHHHHHTCBCTTSCBCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCcchhhhhHHhhhcccCCCCHHHHHHHHHhhhhccccc
Confidence 223459999997653 23 699999999999999999874
No 16
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.96 E-value=2.5e-27 Score=215.93 Aligned_cols=254 Identities=18% Similarity=0.274 Sum_probs=173.0
Q ss_pred CCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhh--
Q 021610 32 KLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI-- 109 (310)
Q Consensus 32 ~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~-- 109 (310)
+.||||+++|++||++++....++..+.+|.++||++|++++|+.+.|+++||++++++|.+. .|+ ++.......
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~~--~f~-~~~~~~~~~~~ 79 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDES--RFD-KNLSQALKFVR 79 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTT--TEE-ECCCHHHHHHH
T ss_pred CCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhhc--CcC-cCchhHHHHHH
Confidence 357999999999999998654578889999999999999999999999999999999999643 353 322122221
Q ss_pred -hcCCCceeEecc--CChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHH
Q 021610 110 -FTGKGQDMVFTV--YGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNM 186 (310)
Q Consensus 110 -~~~~~~~~~~~~--~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i 186 (310)
..+.+ ++.. +|+.|+++||++ .+.|+++.++.+.+.+.++++++++.|.+... ++.++....+..+++++|
T Consensus 80 ~~~~~~---l~~~~~~g~~w~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~--~~~vd~~~~~~~~~~~vi 153 (470)
T 2ij2_A 80 DFAGDG---LFTSWTHEKNWKKAHNIL-LPSFSQQAMKGYHAMMVDIAVQLVQKWERLNA--DEHIEVPEDMTRLTLDTI 153 (470)
T ss_dssp HHHTTS---GGGSCTTSHHHHHHHHHH-GGGGSTTTHHHHHHHHHHHHHHHHHHHHTCCT--TCCEEHHHHHHHHHHHHH
T ss_pred HhcCCc---eEEcCCCchHHHHHHHHh-ccccCHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCeEEHHHHHHHHHHHHH
Confidence 22222 4544 899999999987 48999999999999999999999999975321 234667777778888999
Q ss_pred HHHHhccccCCC--C--chHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021610 187 YRIMFDRRFESQ--D--DPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERK 262 (310)
Q Consensus 187 ~~~~fg~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~ 262 (310)
+.++||.+++.. + .+....+... +....... ...|+++.+.....+... ...+.+..++..+|++|+
T Consensus 154 ~~~~fG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~r~ 224 (470)
T 2ij2_A 154 GLCGFNYRFNSFYRDQPHPFITSMVRA---LDEAMNKL-----QRANPDDPAYDENKRQFQ-EDIKVMNDLVDKIIADRK 224 (470)
T ss_dssp HHHHHSCCCCGGGCSSCCHHHHHHHHH---HHHHHHTC--------CTTSGGGHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccCCCCHHHHHHHHH---HHHHHHHH-----hhhhhHhhccchHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999987542 1 2222222111 11111100 001332222111111111 122345677788888877
Q ss_pred hhhhcccCCCcchhcHHHHHHhhhc---CCCCCHHHHHHHHHHHhhccccC
Q 021610 263 KLASTKSMSNESLKCAIDHILDAQT---KGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 263 ~~~~~~~~~d~~~~~ll~~ll~~~~---~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+ .+. ...|+++.|++..+ ...+++++|..++.++++||++|
T Consensus 225 ~--~~~-----~~~dll~~ll~~~~~~~~~~ls~~ei~~~~~~~~~AG~dT 268 (470)
T 2ij2_A 225 A--SGE-----QSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHET 268 (470)
T ss_dssp H--HCC-----CCSSHHHHHHHCCCTTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred h--ccc-----CchhHHHHHHhccCcccCCCCCHHHHHHHHHHHHHHhhHH
Confidence 6 221 23469999997642 22599999999999999999874
No 17
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.96 E-value=5.9e-28 Score=220.90 Aligned_cols=270 Identities=11% Similarity=0.109 Sum_probs=175.4
Q ss_pred CCCCCCCCCCCCCcccccccccCC----CcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCC
Q 021610 28 GKRFKLPPGPLPVPVFGNWLQVGD----DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR 103 (310)
Q Consensus 28 ~~~~~~ppgP~~~pilGn~~~l~~----~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~ 103 (310)
.++.+.+|||+++|+. |++++.. ..++..+.+|.++||+||++++|+.+.|+++||++++++|.+++ .|++|+.
T Consensus 5 ~~pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~~-~f~~r~~ 82 (487)
T 3n9y_A 5 PRPFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEG-PNPERFL 82 (487)
T ss_dssp CBCGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTCC-SSCCCCC
T ss_pred CCCHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhCC-CCCCCCC
Confidence 3455568999988865 7766521 23678899999999999999999999999999999999998764 7988875
Q ss_pred cchh---hhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcc---cccCChhHHHH
Q 021610 104 NVVF---DIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPE---AATNGIVLRRR 177 (310)
Q Consensus 104 ~~~~---~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~~~~~~~~ 177 (310)
.... ....+ +...+++.+|+.|+++||++.+++|+++.++.+.+.++++++++++.|.+... .++..++....
T Consensus 83 ~~~~~~~~~~~~-~~~~l~~~~g~~w~~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~ 161 (487)
T 3n9y_A 83 IPPWVAYHQYYQ-RPIGVLLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDD 161 (487)
T ss_dssp CHHHHHHHHHTT-CCCCGGGCCHHHHHHHHHHHHHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCHHH
T ss_pred CcHHHHHHHHcc-ccCCCccCCcHHHHHHHHhcCcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHHHH
Confidence 4322 12222 22347889999999999987533699999999999999999999999975321 11123566777
Q ss_pred HHHHHHHHHHHHHhccccCCCCc---hHHHHHHHHHHHhhhhhhcccccccccccc-cccch--hhHHHHHHHHHHHHHh
Q 021610 178 LQLMMYNNMYRIMFDRRFESQDD---PLFNRLKALNGERSRLAQSFEYNYGDFIPI-LRPFL--RGYLKICKEVKERRLQ 251 (310)
Q Consensus 178 ~~~~~~~~i~~~~fg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~-l~~~~--~~~~~~~~~~~~~~~~ 251 (310)
+..+++++|++++||.+++..++ +....+.. .+..+.... ....++|. +..++ ..+.+.. . ..+.+.
T Consensus 162 ~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~p~~l~~~~~~~~~~~~~-~-~~~~~~ 234 (487)
T 3n9y_A 162 LFRFAFESITNVIFGERQGMLEEVVNPEAQRFID---AIYQMFHTS--VPMLNLPPDLFRLFRTKTWKDHV-A-AWDVIF 234 (487)
T ss_dssp HHHHHHHHHHHHHHSSCCCTTSSSCCHHHHHHHH---HHHHHHHHH--GGGTTSCHHHHHHHCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCChHHHHHHH---HHHHHHHHH--HHHHhcCHHHHhhcccHHHHHHH-H-HHHHHH
Confidence 88888899999999998864322 22222211 111111111 11133442 11111 1111111 1 112233
Q ss_pred HHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 252 LFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 252 ~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.+.+.+++++.+........+....|+++.|++. +.+++++|.+++.++++||++|
T Consensus 235 ~~~~~~i~~~~~~~~~~~~~~~~~~d~l~~ll~~---~~l~~~ei~~~~~~~~~AG~dT 290 (487)
T 3n9y_A 235 SKADIYTQNFYWELRQKGSVHHDYRGILYRLLGD---SKMSFEDIKANVTEMLAGGVDT 290 (487)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCSSCCCHHHHHHHS---CSSCHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhhh
Confidence 4455555544331111111112346799999964 4689999999999999999875
No 18
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.95 E-value=2.1e-28 Score=222.43 Aligned_cols=257 Identities=16% Similarity=0.228 Sum_probs=176.9
Q ss_pred CCCCCCCCC-CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCc-c
Q 021610 28 GKRFKLPPG-PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN-V 105 (310)
Q Consensus 28 ~~~~~~ppg-P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~-~ 105 (310)
.++.++||| |+++|++||++++..+ ++..+.+|+++||++|++++|++++|||++|+.++++|.++...|+.++.. .
T Consensus 7 ~~~~~~PPg~P~~lP~iG~l~~~~~~-~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~ 85 (461)
T 3i3k_A 7 PAGVKSPPYIFSPIPFLGHAIAFGKS-PIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSR 85 (461)
T ss_dssp ---CCCCCBCCCSSTTTBTHHHHHHC-HHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHH
T ss_pred CCCCCCCCCCCCCCCccccHHhhccC-HHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHH
Confidence 445678999 8899999999988654 788999999999999999999999999999999999999887666654321 1
Q ss_pred hhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHH
Q 021610 106 VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNN 185 (310)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (310)
....+.|. ++++..+|+.|+++||++ .+.|+++.++.+.+.+++++.++++.|.+. +.++....+...+.++
T Consensus 86 ~~~~~~g~--g~~~~~~g~~w~~~Rr~~-~~~f~~~~l~~~~~~~~~~~~~ll~~l~~~-----~~~dl~~~~~~~~~~~ 157 (461)
T 3i3k_A 86 LTTPVFGK--GVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGES-----GEKNVFEALSELIILT 157 (461)
T ss_dssp HHHHHHCT--TSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCSE-----EEEEHHHHHHHHHHHH
T ss_pred hhhhhcCC--eeeeCCCcHHHHHHHHHH-hhhhCHHHHHHHHHHHHHHHHHHHHHhhhc-----CCcCHHHHHHHHHHHH
Confidence 12223443 345556799999999987 488999999999999999999999998642 1245566677777788
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 021610 186 MYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLA 265 (310)
Q Consensus 186 i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~ 265 (310)
+++++||.++....++...... .. +...+. .....+|.+.+.. .+.+ .. ...+.+..++..++++|++.
T Consensus 158 ~~~~~~G~~~~~~~~~~~~~~~---~~---~~~~~~-~~~~~~P~~l~~~-~~~~-~~-~~~~~~~~~~~~~i~~~~~~- 226 (461)
T 3i3k_A 158 ASHCLHGKEIRSQLNEKVAQLY---AD---LDGGFS-HAAWLLPGWLPLP-SFRR-RD-RAHREIKDIFYKAIQKRRQS- 226 (461)
T ss_dssp HHHHHTCHHHHHTCCHHHHHHH---HH---HHTTSS-HHHHHSCTTSCCH-HHHH-HH-HHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHccHhhhhHHHHHHHHHH---HH---HHhccc-cchhhcccccCCH-HHHH-HH-HHHHHHHHHHHHHHHHHHhc-
Confidence 9999999876543333322111 11 111110 1112234322211 1111 11 12234566777788877652
Q ss_pred hcccCCCcchhcHHHHHHhhhc-CC-CCCHHHHHHHHHHHhhccccC
Q 021610 266 STKSMSNESLKCAIDHILDAQT-KG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 266 ~~~~~~d~~~~~ll~~ll~~~~-~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
. +...|+++.|++... ++ .++++++...+.++++||++|
T Consensus 227 -~-----~~~~d~l~~ll~~~~~~~~~l~~~~i~~~~~~l~~ag~~T 267 (461)
T 3i3k_A 227 -Q-----EKIDDILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHT 267 (461)
T ss_dssp -C-----CCCCSHHHHHHTCBCTTSCBCCHHHHHHHHHHHHHHHHHH
T ss_pred -c-----cccccHHHHHHHhhhccCCCCCHHHHHHHHHHHHhhccHH
Confidence 1 123569999997642 22 599999999999999999864
No 19
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.95 E-value=2.7e-27 Score=214.90 Aligned_cols=252 Identities=14% Similarity=0.160 Sum_probs=162.1
Q ss_pred CCCCC-CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhh
Q 021610 32 KLPPG-PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIF 110 (310)
Q Consensus 32 ~~ppg-P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~ 110 (310)
++||| |+++|++||++++..+ ++..+.+|+++||++|++++|+.++++++||+++++++.+++..|+.++........
T Consensus 4 ~~PPg~p~~~P~iG~~~~~~~~-~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 82 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEFRTD-PIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPI 82 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHHTTC-HHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHH
T ss_pred CCCCCCCCCCCCccCHHHHhhC-hHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhh
Confidence 57898 8899999999988654 788999999999999999999999999999999999998877778887643333333
Q ss_pred cCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHHHH
Q 021610 111 TGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIM 190 (310)
Q Consensus 111 ~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 190 (310)
.+.+ ++ .+|+.|+++|+++ .+.|+++.++.+.+.++++++++++.|.+. +.++....+...+.++|++++
T Consensus 83 ~g~~---~~-~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~~~~~-----~~vd~~~~~~~~~~~vi~~~~ 152 (455)
T 2cib_A 83 FGEG---VV-FDASPERRKEMLH-NAALRGEQMKGHAATIEDQVRRMIADWGEA-----GEIDLLDFFAELTIYTSSACL 152 (455)
T ss_dssp HC-------------------------CCHHHHHHHHHHHHHHHHHHHTTCCSE-----EEEEHHHHHHHHHHHHHHHHH
T ss_pred cCCc---cc-cCcHHHHHHHhhh-ccccCHHHHHHHHHHHHHHHHHHHHHhCCC-----CcEeHHHHHHHHHHHHHHHHH
Confidence 3332 33 4699999999987 589999999999999999999999987531 246666777788889999999
Q ss_pred hccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccc-cchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccc
Q 021610 191 FDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR-PFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKS 269 (310)
Q Consensus 191 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~ 269 (310)
||.+++...++.+... ... +.... .....++|++. +..+. .. ...+.+..++..+|++|++. ...
T Consensus 153 fG~~~~~~~~~~~~~~---~~~---~~~~~-~~~~~~~p~l~~~~~~~----~~-~~~~~~~~~~~~~i~~r~~~--~~~ 218 (455)
T 2cib_A 153 IGKKFRDQLDGRFAKL---YHE---LERGT-DPLAYVDPYLPIESFRR----RD-EARNGLVALVADIMNGRIAN--PPT 218 (455)
T ss_dssp TCHHHHTTCCHHHHHH---HHH---HHTTC-CGGGGTCTTCSCHHHHH----HH-HHHHHHHHHHHHHHHHHHHC--C--
T ss_pred cCCCcchhhhHHHHHH---HHH---HHhhh-hHHHHhcccCCChhHHH----HH-HHHHHHHHHHHHHHHHHHhc--ccC
Confidence 9998764333322211 111 11111 11223455442 11111 11 12234566777888887752 111
Q ss_pred CCCcchhcHHHHHHhhhc-CC-C-CCHHHHHHHHHHHhhccccC
Q 021610 270 MSNESLKCAIDHILDAQT-KG-E-INEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 270 ~~d~~~~~ll~~ll~~~~-~~-~-~~~e~i~~~~~~l~~aG~~~ 310 (310)
+..+.|+++.|++..+ ++ . +++++|..++.++++||++|
T Consensus 219 --~~~~~dll~~ll~~~~~~~~~~l~~~~i~~~~~~l~~AG~eT 260 (455)
T 2cib_A 219 --DKSDRDMLDVLIAVKAETGTPRFSADEITGMFISMMFAGHHT 260 (455)
T ss_dssp -----CCCHHHHHHHCBCTTSSBSCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcccHHHHHHHhhhhcCCCCCCHHHHHHHHHHHHHhcccc
Confidence 0112379999997642 23 3 99999999999999999874
No 20
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.95 E-value=7.1e-27 Score=211.48 Aligned_cols=248 Identities=17% Similarity=0.224 Sum_probs=173.1
Q ss_pred CCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhh
Q 021610 29 KRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (310)
Q Consensus 29 ~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~ 108 (310)
++.+.||||+++|++||++++..+ ++ .+.++.++||++|++++++.+.|+++||+++++++.+++..|+.+.. ....
T Consensus 9 ~~~~~pPgp~~~P~iG~~~~~~~~-~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~-~~~~ 85 (444)
T 2ve3_A 9 NSLPIPPGDFGLPWLGETLNFLND-GD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWP-LSTR 85 (444)
T ss_dssp CCCCCCCCCCCBTTTBTHHHHHHC-TT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECC-HHHH
T ss_pred CCCCCCCCCCCCCccccHHHHhcC-cH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchh-HHHH
Confidence 455689999999999999887554 56 78899999999999998888999999999999999887666764432 1223
Q ss_pred hhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHH
Q 021610 109 IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYR 188 (310)
Q Consensus 109 ~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 188 (310)
.+.+. ..++..+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+ ++.++....+..++++++++
T Consensus 86 ~~~g~--~~l~~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~-----~~~vd~~~~~~~~~~~vi~~ 157 (444)
T 2ve3_A 86 ILLGP--NALATQMGEIHRSRRKIL-YQAFLPRTLDSYLPKMDGIVQGYLEQWGK-----ANEVIWYPQLRRMTFDVAAT 157 (444)
T ss_dssp HHHCT--TSGGGCCHHHHHHHHHHH-HGGGCHHHHHTTHHHHHHHHHHHHHHHHH-----SSEEEHHHHHHHHHHHHHHH
T ss_pred HHhCc--cccccCCchHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhcC-----CCcEeHHHHHHHHHHHHHHH
Confidence 33332 125668899999999987 58999999999999999999999999963 12466667778888899999
Q ss_pred HHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcc
Q 021610 189 IMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTK 268 (310)
Q Consensus 189 ~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ 268 (310)
++|| +.+..++.....+..+. ..+ . .....+|.. .++. ... ..+.+..++..+|++|++. +
T Consensus 158 ~~fG-~~~~~~~~~~~~~~~~~---~~~---~--~~~~~~p~~--~~~~----~~~-~~~~~~~~~~~~i~~r~~~--~- 218 (444)
T 2ve3_A 158 LFMG-EKVSQNPQLFPWFETYI---QGL---F--SLPIPLPNT--LFGK----SQR-ARALLLAELEKIIKARQQQ--P- 218 (444)
T ss_dssp HHTC-HHHHSCTTHHHHHHHHH---HHH---S--SCCCCSTTS--HHHH----HHH-HHHHHHHHHHHHHHHHHTS--C-
T ss_pred HHcC-CCcccHHHHHHHHHHHH---HHH---h--cCCccCCCc--HHHH----HHH-HHHHHHHHHHHHHHHHhcC--C-
Confidence 9999 33322212111111111 111 0 111223321 0111 111 1234566777888887762 1
Q ss_pred cCCCcchhcHHHHHHhhhc-C-CCCCHHHHHHHHHHHhhccccC
Q 021610 269 SMSNESLKCAIDHILDAQT-K-GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 269 ~~~d~~~~~ll~~ll~~~~-~-~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
....|+++.|++..+ + ..++++++..++.++++||++|
T Consensus 219 ----~~~~d~l~~ll~~~~~~~~~l~~~~i~~~~~~~~~AG~~T 258 (444)
T 2ve3_A 219 ----PSEEDALGILLAARDDNNQPLSLPELKDQILLLLFAGHET 258 (444)
T ss_dssp ----CCCSSHHHHHHHCBCTTSCBCCHHHHHHHHHHHHHHHHHH
T ss_pred ----CCccCHHHHHHhccccCCCCCCHHHHHHHHHHHHHHcchH
Confidence 123469999997642 2 3599999999999999999874
No 21
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.94 E-value=8.7e-27 Score=212.19 Aligned_cols=251 Identities=18% Similarity=0.203 Sum_probs=149.8
Q ss_pred CCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCC-cchhhhh
Q 021610 32 KLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR-NVVFDIF 110 (310)
Q Consensus 32 ~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~-~~~~~~~ 110 (310)
.-||||+++|++||++++..+ ++..+.++.+ ||+||++++|+.++++++||+++++++.++ .|+.++. ......+
T Consensus 23 eppPgP~~~P~iG~~~~~~~~-p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~~ 98 (467)
T 3dbg_A 23 EPPVAGGGVPLLGHGWRLARD-PLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEGL 98 (467)
T ss_dssp BCCEECCCCSTTHHHHHHHHC-HHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC-------------
T ss_pred CCCCCCCCCCcccchHHhccC-HHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHHh
Confidence 358899999999999988654 7888888887 999999999999999999999999999877 5644432 2222223
Q ss_pred cCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHHHH
Q 021610 111 TGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIM 190 (310)
Q Consensus 111 ~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 190 (310)
.+ ...++..+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+ ++.++....+...+.++++.++
T Consensus 99 ~g--~~~l~~~dg~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~-----~~~~d~~~~~~~~~~~vi~~~~ 170 (467)
T 3dbg_A 99 LG--KEGVATANGPLHRRQRRTI-QPAFRLDAIPAYGPIMEEEAHALTERWQP-----GKTVDATSESFRVAVRVAARCL 170 (467)
T ss_dssp -------------------CGGG-HHHHSTTTSTTTHHHHHHHHHHHHHHSCT-----TSCEEHHHHHHHHHHHHHHHHH
T ss_pred cC--CCCcccCCcHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhcc-----CCcCcHHHHHHHHHHHHHHHHH
Confidence 33 1236778999999999987 58999999999999999999999999864 1346666777778889999999
Q ss_pred hccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccc--cccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcc
Q 021610 191 FDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPI--LRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTK 268 (310)
Q Consensus 191 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~--l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~ 268 (310)
||.+++. .....+...... +.... ....++|+ +..+.....+... ...+.+..++..++++|++ ++
T Consensus 171 ~g~~~~~---~~~~~~~~~~~~---~~~~~--~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~r~~--~~- 238 (467)
T 3dbg_A 171 LRGQYMD---ERAERLCVALAT---VFRGM--YRRMVVPLGPLYRLPLPANRRFN-DALADLHLLVDEIIAERRA--SG- 238 (467)
T ss_dssp SCSSCCH---HHHHHHHHHHHH---HHHC---------------------------CCHHHHHHHHHHHHHHHTT--CC-
T ss_pred hCCcccc---hhHHHHHHHHHH---HHHHH--HHHhccchhhhhhCCChHhHHHH-HHHHHHHHHHHHHHHHHHh--cC-
Confidence 9987653 111112111111 11111 01123332 1111000001111 1123455667778887765 22
Q ss_pred cCCCcchhcHHHHHHhhhcC--CCCCHHHHHHHHHHHhhccccC
Q 021610 269 SMSNESLKCAIDHILDAQTK--GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 269 ~~~d~~~~~ll~~ll~~~~~--~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+.+.|+++.|++..++ ..++++++..++.++++||++|
T Consensus 239 ----~~~~dll~~ll~~~~~~~~~ls~~ei~~~~~~l~~AG~eT 278 (467)
T 3dbg_A 239 ----QKPDDLLTALLEAKDDNGDPIGEQEIHDQVVAILTPGSET 278 (467)
T ss_dssp ----SSCCSHHHHHTTC--------CHHHHHHHHHHHHHHHHHH
T ss_pred ----CCchHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhHHH
Confidence 1235699999976432 2599999999999999999874
No 22
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.92 E-value=4.3e-26 Score=208.85 Aligned_cols=258 Identities=12% Similarity=0.101 Sum_probs=165.9
Q ss_pred CCCCCCCCCCCC-CcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcC-cccCCCCCcc
Q 021610 28 GKRFKLPPGPLP-VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQG-VEFGSRTRNV 105 (310)
Q Consensus 28 ~~~~~~ppgP~~-~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~-~~f~~R~~~~ 105 (310)
++..++||||++ +|++||++++..+ ++..+.+|+++||++|++++|+.+++||+||++++++|.+++ ..|++++..
T Consensus 9 ~~~~~~PPgp~~~lPliG~~~~~~~~-p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~~- 86 (491)
T 3v8d_A 9 RRQTGEPPLENGLIPYLGCALQFGAN-PLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFA- 86 (491)
T ss_dssp CCCTTSCCEEEEEESSTTTTGGGTCC-HHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHHH-
T ss_pred ccCCCCCCCCCCCcceeccHHHHhcC-HHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHHH-
Confidence 344578999999 6999999998765 899999999999999999999999999999999999997654 234444322
Q ss_pred hhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCccc--ccCChhHHHHHHHHHH
Q 021610 106 VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEA--ATNGIVLRRRLQLMMY 183 (310)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~~~~~~~~~~~~~ 183 (310)
....+.+.+ .+...+|+.|+++|+.+ .++|+++.++.+.+.+.+++.++++.+...... .....+....+...+.
T Consensus 87 ~~~~~~g~~--~~~~~~g~~~~~~Rr~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~ 163 (491)
T 3v8d_A 87 LSAKAFGHR--SIDPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMF 163 (491)
T ss_dssp HHHHHHTCC--CCCGGGSSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHHHHHHHHHH
T ss_pred HHHHhcCCc--ccccccchhHHHHHHHH-HHHcCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHHHHHHHHHH
Confidence 222333322 34557899999999976 589999999999999999999999865432211 0112345556667777
Q ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccc-cchhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021610 184 NNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR-PFLRGYLKICKEVKERRLQLFKDYFVEERK 262 (310)
Q Consensus 184 ~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~ 262 (310)
++++.++||.+....+ ............+.. +.+.+|.+. .......++.... .+.+ .+.+.+.+.
T Consensus 164 ~~~~~~~fG~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~l~~~~p~~~~~~~~~a-~~~l---~~~~~~~~~ 230 (491)
T 3v8d_A 164 EAGYLTIFGRDLTRRD-TQKAHILNNLDNFKQ--------FDKVFPALVAGLPIHMFRTAHNA-REKL---AESLRHENL 230 (491)
T ss_dssp HHHHHHHHCBCCSCGG-GHHHHHHHHHHHHHH--------HHHHHHHHHTTCCGGGCHHHHHH-HHHH---HHHTSHHHH
T ss_pred HHHHHHHcCccccccc-hhhhhhHHHHHHHHH--------HHHHHHHHHhcCChHHHHHHHHH-HHHH---HHHHHHHHH
Confidence 8899999998765322 221111111111111 112233222 1101101111111 1112 222222222
Q ss_pred hhhhcccCCCcchhcHHHHHHhhhc-CCCCCHHHHHHHHHHHhhccccC
Q 021610 263 KLASTKSMSNESLKCAIDHILDAQT-KGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 263 ~~~~~~~~~d~~~~~ll~~ll~~~~-~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+. . +.+.++++.+++..+ .+.++++++...+..+++||++|
T Consensus 231 ~~--~-----~~~~d~l~~l~~~~~~~~~~~~~ei~~~~~~~~~ag~~t 272 (491)
T 3v8d_A 231 QK--R-----ESISELISLRMFLNDTLSTFDDLEKAKTHLVVLWASQAN 272 (491)
T ss_dssp TT--C-----BSCCHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHTT
T ss_pred hc--c-----ccccHHHHHHHHHhhccCCCchHHHHHHHHHHHHHhHHH
Confidence 21 1 123459999987543 34699999999999999999875
No 23
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.92 E-value=1.8e-24 Score=195.19 Aligned_cols=235 Identities=12% Similarity=0.143 Sum_probs=156.5
Q ss_pred CCCCCCCCCCccccccc-ccCCCcchHHHHHHHHhhCCeEEEEe-cCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhh
Q 021610 31 FKLPPGPLPVPVFGNWL-QVGDDLNHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD 108 (310)
Q Consensus 31 ~~~ppgP~~~pilGn~~-~l~~~~~~~~~~~~~~~yG~v~~~~~-g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~ 108 (310)
.+.||||+++|++||+. .+..+ ++..+.++ ++|||||++++ |+.++++++||++++++|.++ .|++|+......
T Consensus 25 ~~~~PGP~~~p~lG~~~~~~~~~-p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~ 100 (436)
T 2cd8_A 25 QQGTTASPPVLDLGALGQDFAAD-PYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNSTTP 100 (436)
T ss_dssp ---------CCBHHHHHHHHHHC-CHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCSSC
T ss_pred ccCCCCCCccccCCCCCcccccC-hHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCcccccccccc
Confidence 45689999999999986 34333 78889999 99999999998 888999999999999999876 588776311111
Q ss_pred hh---cCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHHH
Q 021610 109 IF---TGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYN 184 (310)
Q Consensus 109 ~~---~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~~ 184 (310)
.. ...+ ..++..+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+.. ++.++....+. .++.+
T Consensus 101 ~~~~~~~~~-~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~---~~~vd~~~~~~~~~~~~ 175 (436)
T 2cd8_A 101 LTEAEAALN-HNMLESDPPRHTRLRKLV-AREFTMRRVELLRPRVQEIVDGLVDAMLAAP---DGRADLMESLAWPLPIT 175 (436)
T ss_dssp CCTTGGGTC-CSGGGCCTTHHHHHHHHH-GGGSSHHHHHTTHHHHHHHHHHHHHHHHTCT---TSCEEHHHHTTTHHHHH
T ss_pred ccccccccc-ccccccCchHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCcchHHHHHHHHHHH
Confidence 10 1112 236678999999999987 5899999999999999999999999998421 23456555553 56778
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021610 185 NMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKL 264 (310)
Q Consensus 185 ~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 264 (310)
+|+. +||.+.+. ... +..... .+... . + + +...+ ..+.+..++..+|++|++
T Consensus 176 vi~~-~~G~~~~~--~~~---~~~~~~---~~~~~-----~---~---~--~~~~~-----~~~~~~~~~~~~i~~r~~- 227 (436)
T 2cd8_A 176 VISE-LLGVPEPD--RAA---FRVWTD---AFVFP-----D---D---P--AQAQT-----AMAEMSGYLSRLIDSKRG- 227 (436)
T ss_dssp HHHH-HHTCCGGG--HHH---HHHHHH---HHHSC-----S---S---T--THHHH-----HHHHHHHHHHHHHHHHTT-
T ss_pred HHHH-HhCCCHHH--HHH---HHHHHH---HHhcc-----C---C---H--HHHHH-----HHHHHHHHHHHHHHHHhc-
Confidence 8887 69986532 111 111111 11110 0 1 1 11111 123455677778887765
Q ss_pred hhcccCCCcchhcHHHHHHhhhc--CCCCCHHHHHHHHHHHhhccccC
Q 021610 265 ASTKSMSNESLKCAIDHILDAQT--KGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 265 ~~~~~~~d~~~~~ll~~ll~~~~--~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
++ ..|+++.|++..+ ...+|+++|..++.++++||++|
T Consensus 228 -~~-------~~d~l~~ll~~~~~~~~~ls~~ei~~~~~~l~~AG~eT 267 (436)
T 2cd8_A 228 -QD-------GEDLLSALVRTSDEDGSRLTSEELLGMAHILLVAGHET 267 (436)
T ss_dssp -SC-------CCSHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHTTHHH
T ss_pred -CC-------CCCHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHhhHH
Confidence 11 1349999997643 33699999999999999999874
No 24
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.91 E-value=2.4e-23 Score=185.98 Aligned_cols=237 Identities=14% Similarity=0.106 Sum_probs=158.2
Q ss_pred CCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEec-CeeEEEEcCHHHHHHHHHhcC-cccCCCCCcchhhh-
Q 021610 33 LPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHTQG-VEFGSRTRNVVFDI- 109 (310)
Q Consensus 33 ~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g-~~~~vvi~~pe~i~evl~~~~-~~f~~R~~~~~~~~- 109 (310)
+||||+++|++||+.+ .|+..+.+|. +||||++++++ +.+.+++++++.++++|.++. ..+++|+.......
T Consensus 2 ~pPGp~~~P~~g~~~~----~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~ 76 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP----EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSAS 76 (404)
T ss_dssp ----CCBSSCCCSSTT----SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHH
T ss_pred CCCCCCCCCCCCCcCC----CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCcccccc
Confidence 5999999999999875 3788889895 59999999874 566777899999999998763 34555553322111
Q ss_pred --hcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHH
Q 021610 110 --FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMY 187 (310)
Q Consensus 110 --~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ 187 (310)
....+...++..+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+.... +..++....+...+.++++
T Consensus 77 ~~~~~~~~~~l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~-~~~~d~~~~~~~~~~~~i~ 154 (404)
T 1jfb_A 77 GKQAAKAKPTFVDMDPPEHMHQRSMV-EPTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCA-NGPVDLVKEFALPVPSYII 154 (404)
T ss_dssp HHHHTTSCCCGGGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCST-TSCEEHHHHTTTHHHHHHH
T ss_pred ccchhcccCcccccCchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCccHHHHHHHHHHHHHH
Confidence 011122246778899999999986 589999999999999999999999999753211 1245666666666677888
Q ss_pred HHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Q 021610 188 RIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLAST 267 (310)
Q Consensus 188 ~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~ 267 (310)
..+||.+.+. .+. +...... + . ...| ..+... ...+.+..++..+|++|++. +
T Consensus 155 ~~~~G~~~~~--~~~---~~~~~~~---~-~-------~~~~----~~~~~~-----~~~~~~~~~~~~~i~~r~~~--~ 207 (404)
T 1jfb_A 155 YTLLGVPFND--LEY---LTQQNAI---R-T-------NGSS----TAREAS-----AANQELLDYLAILVEQRLVE--P 207 (404)
T ss_dssp HHHHTCCGGG--HHH---HHHHHHH---H-H-------CTTS----CHHHHH-----HHHHHHHHHHHHHHHHHHHS--C
T ss_pred HHHcCCCHHH--HHH---HHHHHHH---H-h-------ccCc----chHHHH-----HHHHHHHHHHHHHHHHHHhC--C
Confidence 8999986532 111 1111110 0 0 0011 111111 11234566777888877651 1
Q ss_pred ccCCCcchhcHHHHHHhhh-cCCCCCHHHHHHHHHHHhhccccC
Q 021610 268 KSMSNESLKCAIDHILDAQ-TKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 268 ~~~~d~~~~~ll~~ll~~~-~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
..|+++.|++.. +++.++++++..++.++++||++|
T Consensus 208 -------~~d~l~~ll~~~~~~~~l~~~ei~~~~~~l~~AG~eT 244 (404)
T 1jfb_A 208 -------KDDIISKLCTEQVKPGNIDKSDAVQIAFLLLVAGNAT 244 (404)
T ss_dssp -------CSSHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred -------CCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhhhh
Confidence 134999999653 334699999999999999999874
No 25
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.91 E-value=2.9e-23 Score=188.23 Aligned_cols=242 Identities=20% Similarity=0.284 Sum_probs=160.7
Q ss_pred CcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcc-hhhhhcC---CCceeEeccCChhHH
Q 021610 52 DLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-VFDIFTG---KGQDMVFTVYGEHWR 127 (310)
Q Consensus 52 ~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~-~~~~~~~---~~~~~~~~~~g~~W~ 127 (310)
+.+|..+.+|+++|||+|++++|+.++|+++||++++++|.++ .|..++... ......+ .+.++++..+|+.|+
T Consensus 10 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w~ 87 (456)
T 3mdm_A 10 RVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMST--KYNKDSKMYRALQTVFGERLFGQGLVSECNYERWH 87 (456)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTCT--TSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHHH
T ss_pred chHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhhc--cccccchhHHHHHHhhcccccCCCcccCCChHHHH
Confidence 3468889999999999999999999999999999999999643 455554211 1111111 123344556899999
Q ss_pred HHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHHHHhccccCCCCc---hHHH
Q 021610 128 KMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD---PLFN 204 (310)
Q Consensus 128 ~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fg~~~~~~~~---~~~~ 204 (310)
++||++ .+.|+++.++.+.+.++++++++++.|.+.... +..++....+..++.++|++++||.+++...+ +...
T Consensus 88 ~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~-~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~ 165 (456)
T 3mdm_A 88 KQRRVI-DLAFSRSSLVSLMETFNEKAEQLVEILEAKADG-QTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQKPLSQ 165 (456)
T ss_dssp HHHHHH-GGGGSHHHHHTTHHHHHHHHHHHHHHHHHTCSS-SSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGTCCHHHHH
T ss_pred HHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCeeeHHHHHHHHHHHHHHHHHcCCChhhhcccccHHHH
Confidence 999987 589999999999999999999999999865422 23567777788888999999999998864321 2222
Q ss_pred HHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHh
Q 021610 205 RLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILD 284 (310)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~ 284 (310)
.+..+.... .... ..+..++|... ...+... ...+.+..+...++++|++....+ +..+.|+++.|++
T Consensus 166 ~~~~~~~~~---~~~~-~~~~~~~p~~~----~~~~~~~-~~~~~~~~~~~~~i~~r~~~~~~~---~~~~~d~l~~ll~ 233 (456)
T 3mdm_A 166 AVKLMLEGI---TASR-NTLAKFLPGKR----KQLREVR-ESIRFLRQVGRDWVQRRREALKRG---EEVPADILTQILK 233 (456)
T ss_dssp HHHHHHHHH---HHHH-HSCGGGCGGGH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTT---CCCCCCHHHHHHH
T ss_pred HHHHHHHHH---HHHH-HHHHHhCchhH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc---ccchhhHHHHHHH
Confidence 222221111 1100 11112333211 1111111 112345566777777776532211 1234679999997
Q ss_pred hhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 285 AQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 285 ~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.. ++.++++++.+++.++++||++|
T Consensus 234 ~~-~~~~~~~~l~~~~~~l~~AG~dT 258 (456)
T 3mdm_A 234 AE-EGAQDDEGLLDNFVTFFIAGHET 258 (456)
T ss_dssp HT-SSCSSSHHHHHHHHHHHHHTTHH
T ss_pred hc-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 64 34689999999999999999875
No 26
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.90 E-value=1.2e-22 Score=182.77 Aligned_cols=249 Identities=10% Similarity=0.085 Sum_probs=161.5
Q ss_pred CCCCCCCCCCCcccccccccC---C-CcchHHHHHHHHhhCCeEEEEe-cCeeEEEEcCHHHHHHHHHhcCcccCCCCC-
Q 021610 30 RFKLPPGPLPVPVFGNWLQVG---D-DLNHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTR- 103 (310)
Q Consensus 30 ~~~~ppgP~~~pilGn~~~l~---~-~~~~~~~~~~~~~yG~v~~~~~-g~~~~vvi~~pe~i~evl~~~~~~f~~R~~- 103 (310)
+..+||| ++|++.+.. . ..++..+.++++ ||||+++++ |+.+++||++|+.|+++|.+. ..|++|+.
T Consensus 4 ~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~~~ 76 (428)
T 1cpt_A 4 RATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAEGS 76 (428)
T ss_dssp TCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSSSC
T ss_pred ccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCcccc
Confidence 3468888 899876542 1 236788888866 899999998 788999999999999999654 57988875
Q ss_pred cchh---h-h-h---cCC---CceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCCh
Q 021610 104 NVVF---D-I-F---TGK---GQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGI 172 (310)
Q Consensus 104 ~~~~---~-~-~---~~~---~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 172 (310)
.... . . + .|. ....++..+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+.. +.+
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~g~~~~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~----~~~ 151 (428)
T 1cpt_A 77 EILYDQNNEAFMRSISGGCPHVIDSLTSMDPPTHTAYRGLT-LNWFQPASIRKLEENIRRIAQASVQRLLDFD----GEC 151 (428)
T ss_dssp SSCCCHHHHHHHHHHTTTSSCSSCCGGGCCTTHHHHHHHHH-HTTSSHHHHGGGHHHHHHHHHHHHHHHHTSS----SEE
T ss_pred ccCCcccccchhccccccccccccccccCChHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHHhC----CCe
Confidence 3221 1 2 2 321 12346778899999999987 5899999999999999999999999997531 235
Q ss_pred hHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHh
Q 021610 173 VLRRRL-QLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQ 251 (310)
Q Consensus 173 ~~~~~~-~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~ 251 (310)
+....+ ..+++++|+++ ||.+.+. .. .+..... .+..... .....+|+++.....+.+... ...+.+.
T Consensus 152 d~~~~~~~~~~~~vi~~~-fG~~~~~--~~---~~~~~~~---~~~~~~~-~~~~~~P~l~~~~~~~~~~~~-~~~~~~~ 220 (428)
T 1cpt_A 152 DFMTDCALYYPLHVVMTA-LGVPEDD--EP---LMLKLTQ---DFFGVHE-PDEQAVAAPRQSADEAARRFH-ETIATFY 220 (428)
T ss_dssp EHHHHTTTTHHHHHHHHH-HTCCGGG--HH---HHHHHHH---TTTCC-----------------CHHHHHH-HHHHHHH
T ss_pred ehHHHHHhhhHHHHHHHH-cCCCHhH--HH---HHHHHHH---HHHhccc-ccccccccccccchhhHHHHH-HHHHHHH
Confidence 554444 35777999999 9986542 11 1111111 1111111 111234554421101111111 1223456
Q ss_pred HHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcCC-CCCHHHHHHHHHHHhhccccC
Q 021610 252 LFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 252 ~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.++..+|++|++ ++ ..|+++.|++...++ .+|++++..++.++++||++|
T Consensus 221 ~~~~~~i~~r~~--~~-------~~dll~~ll~~~~~~~~ls~~ei~~~~~~l~~AG~eT 271 (428)
T 1cpt_A 221 DYFNGFTVDRRS--CP-------KDDVMSLLANSKLDGNYIDDKYINAYYVAIATAGHDT 271 (428)
T ss_dssp HHHHHHHHHHTT--SC-------CSSHHHHHHHCBSSSSBCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CC-------CCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 677788887765 11 135999999765443 599999999999999999875
No 27
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.89 E-value=2.5e-23 Score=190.41 Aligned_cols=256 Identities=13% Similarity=0.093 Sum_probs=154.4
Q ss_pred CCCCCCCCCC-CcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCc-ccCCCCCcchh
Q 021610 30 RFKLPPGPLP-VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGV-EFGSRTRNVVF 107 (310)
Q Consensus 30 ~~~~ppgP~~-~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~-~f~~R~~~~~~ 107 (310)
..+.||||++ +|++||++++..+ ++..+.+|+++||++|++++|+.++|||+||+++++++.++.. .|..++. ...
T Consensus 11 ~~~~pPgp~~~~P~iG~~~~~~~~-~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~-~~~ 88 (491)
T 3dax_A 11 QTGEPPLENGLIPYLGCALQFGAN-PLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHF-ATS 88 (491)
T ss_dssp CTTCCCEEEEEESCTTTTGGGTCC-HHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHH-HHH
T ss_pred CCCCCCcCCCcccchhhHHHHhhC-HHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHH-HHH
Confidence 3467999998 8999999998654 7889999999999999999999999999999999999976542 2322221 112
Q ss_pred hhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCc--ccccCChhHHHHHHHHHHHH
Q 021610 108 DIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDP--EAATNGIVLRRRLQLMMYNN 185 (310)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~~~~~~~~~~~~~~~ 185 (310)
....+.+ .+...+|+.|+++|+.+. +.|+.+.++.+.+.+.+++.++++...... ......++........++++
T Consensus 89 ~~~~g~~--~~~~~~g~~w~~~r~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 165 (491)
T 3dax_A 89 AKAFGHR--SIDPMDGNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEA 165 (491)
T ss_dssp HHHHTCC--CCCGGGTSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHHHHH
T ss_pred HHHcCCC--cccccchhHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHHHHH
Confidence 2223333 222577899999999875 688998898888888888777776543211 00001233445555666677
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHhhhhhhccccccccccccccc-chhhHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 021610 186 MYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRP-FLRGYLKICKEVKERRLQLFKDYFVEERKKL 264 (310)
Q Consensus 186 i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~ 264 (310)
++.+.||.+.+.. +.....+..+...+.. +.+.+|++.. +.....+..... ...+.+.+++++.+
T Consensus 166 ~~~~~fG~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~p~l~~~lp~~~~~~~~~~----~~~~~~~~~~~~~~- 231 (491)
T 3dax_A 166 GYLTIFGRDLTRR-DTQKAHILNNLDNFKQ--------FDKVFPALVAGLPIHMFRTAHNA----REKLAESLRHENLQ- 231 (491)
T ss_dssp HHHHHHCBCSTTG-GGHHHHHHHHHHHHHH--------HHHHHHHHHTTCCGGGSHHHHHH----HHHHHHHTSHHHHT-
T ss_pred hHHHHcCcccccc-cchhhhhhHHHHHHHH--------HHHHhHHHHHhCCHhhhhHHHHH----HHHHHHHHHHHHhh-
Confidence 8888899876542 2222222222111111 1133453321 111111111111 11122222333332
Q ss_pred hhcccCCCcchhcHHHHHHhhh-cCCCCCHHHHHHHHHHHhhccccC
Q 021610 265 ASTKSMSNESLKCAIDHILDAQ-TKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 265 ~~~~~~~d~~~~~ll~~ll~~~-~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.. +...|+++.+++.. +.+.++++++.+++.++++||++|
T Consensus 232 -~~-----~~~~d~l~~ll~~~~~~~~~~~~~i~~~~~~~~~ag~~t 272 (491)
T 3dax_A 232 -KR-----ESISELISLRMFLNDTLSTFDDLEKAKTHLVVLWASQAN 272 (491)
T ss_dssp -TC-----BSCCHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHTT
T ss_pred -cc-----cchhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhccc
Confidence 11 12356999988653 234689999999999999999875
No 28
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.89 E-value=1.5e-22 Score=185.68 Aligned_cols=258 Identities=12% Similarity=0.036 Sum_probs=152.5
Q ss_pred cCCCCCCCCCCCC-CcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCc-
Q 021610 27 RGKRFKLPPGPLP-VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN- 104 (310)
Q Consensus 27 ~~~~~~~ppgP~~-~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~- 104 (310)
+++..++||||++ +|++||++++..+ ++..+.+|+++||++|++++|+.++||++||++++++|.++...++.++..
T Consensus 13 ~~~~~~~PPgp~~~~P~iG~~~~~~~~-~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~ 91 (498)
T 3b6h_A 13 RTRRPGEPPLDLGSIPWLGYALDFGKD-AASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAI 91 (498)
T ss_dssp CCCCTTCCCEECCSSTTTBTHHHHHHC-HHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHH
T ss_pred hccCCCCCCCCCCCCcchhhHHHhccC-HHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHH
Confidence 3445568999998 8999999988654 788999999999999999999999999999999999997765435444321
Q ss_pred chhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHH
Q 021610 105 VVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYN 184 (310)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 184 (310)
.......+.+ ++..+|+.|++ .+ .+.|+.+.++.+.+.+.++..+.++............++........+++
T Consensus 92 ~~~~~~~g~~---~~~~~~~~~rr---~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vi~~ 164 (498)
T 3b6h_A 92 FLMERIFDVQ---LPHYSPSDEKA---RM-KLTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLR 164 (498)
T ss_dssp HHHHHTSCCC---CTTCCHHHHHH---HH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEHHHHHHHHHHH
T ss_pred HHHHHHcCCC---ccccCHHHHHH---HH-HHhhchHhHHHHHHHHHHHHHHHHhhcccccCCCcceecHHHHHHHHHHH
Confidence 1222233333 34566777754 33 35788888888888777777777765532110000123344555556667
Q ss_pred HHHHHHhccccCCCCchHHH--HHHHHHHHhhhhhhcccccccccccccc-cchhh-HHHHHHHHHHHHHhHHHHHHHHH
Q 021610 185 NMYRIMFDRRFESQDDPLFN--RLKALNGERSRLAQSFEYNYGDFIPILR-PFLRG-YLKICKEVKERRLQLFKDYFVEE 260 (310)
Q Consensus 185 ~i~~~~fg~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~P~l~-~~~~~-~~~~~~~~~~~~~~~~~~~~i~~ 260 (310)
+++.++||.+++.. +.... ....+......+. .+.+.+|++. .++.. ..+... +....+.+.++++
T Consensus 165 ~~~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 234 (498)
T 3b6h_A 165 AGYLTLYGIEALPR-THESQAQDRVHSADVFHTFR-----QLDRLLPKLARGSLSVGDKDHMC----SVKSRLWKLLSPA 234 (498)
T ss_dssp HHHHHHHCBSCSSC-CHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHTCCCHHHHHHHH----HHHHHHHHHTCHH
T ss_pred HHHHhhcCcccccc-cccchhhHHHhhHHHHHHHH-----HHHhhHHHHHHHhcCchhhHHHH----HHHHHHHHHHHHH
Confidence 78888899887543 22110 1111111111110 1224455432 22111 011111 1112222223333
Q ss_pred HHhhhhcccCCCcchhcHHHHHHhhh-cCCCCCHHHHHHHHHHHhhccccC
Q 021610 261 RKKLASTKSMSNESLKCAIDHILDAQ-TKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 261 r~~~~~~~~~~d~~~~~ll~~ll~~~-~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+.+ +. ..+.|+++.+++.. +++.++++++. .+.++++||++|
T Consensus 235 ~~~--~~-----~~~~d~l~~ll~~~~~~~~~~~~~~~-~~~~~l~ag~~t 277 (498)
T 3b6h_A 235 RLA--RR-----AHRSKWLESYLLHLEEMGVSEEMQAR-ALVLQLWATQGN 277 (498)
T ss_dssp HHT--TC-----BSCCHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHTT
T ss_pred HHh--cc-----ccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHhhhc
Confidence 332 11 12456999999654 33457888888 777888899875
No 29
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.89 E-value=1e-21 Score=175.51 Aligned_cols=229 Identities=8% Similarity=0.062 Sum_probs=155.0
Q ss_pred CCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEE----e-cC-eeEEEEcCHHHHHHHH-HhcCcccCCCCC
Q 021610 31 FKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLR----M-GQ-RNLVVVSSPDHAKEVL-HTQGVEFGSRTR 103 (310)
Q Consensus 31 ~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~----~-g~-~~~vvi~~pe~i~evl-~~~~~~f~~R~~ 103 (310)
.++||||+++|+. +.. .++..+.+| ++||+|++++ + |+ .++|+++||++++++| .++ .|++++.
T Consensus 9 ~~lppgp~~~p~~-----~~~-~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~~ 79 (406)
T 1ued_A 9 APLLREPANFQLR-----TNC-DPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRPQ 79 (406)
T ss_dssp CCEEECCTTTTCE-----ETT-EECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCCC
T ss_pred CCCcccCcccCCC-----CCC-CcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--ccccccc
Confidence 4589999999977 233 378899999 9999999999 7 78 8999999999999999 544 3666653
Q ss_pred cchhh-hhcC---CCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH
Q 021610 104 NVVFD-IFTG---KGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ 179 (310)
Q Consensus 104 ~~~~~-~~~~---~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~ 179 (310)
..... .+.. .+ +.++..+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+. ++.++....+.
T Consensus 80 ~~~~~~~~~~~~~~~-~~l~~~~g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~----g~~~d~~~~~~ 153 (406)
T 1ued_A 80 FTQSKSGAHVEAQFV-GQISTYDPPEHTRLRKML-TPEFTVRRIRRMEPAIQSLIDDRLDLLEAE----GPSADLQGLFA 153 (406)
T ss_dssp C---------CGGGT-TCGGGCCTTHHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHHH----CTTEEHHHHTH
T ss_pred ccccccccccccccc-cccccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCeeHHHHHH
Confidence 11110 1110 11 136678999999999987 589999999999999999999999999741 22455555555
Q ss_pred H-HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHH
Q 021610 180 L-MMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFV 258 (310)
Q Consensus 180 ~-~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 258 (310)
. .+.++|+ .+||.+.+. .. .+.. ....+.. . ..+ + +. .. ...+.+..++..+|
T Consensus 154 ~~~~~~vi~-~~~G~~~~~--~~---~~~~---~~~~~~~-----~--~~~---~--~~----~~-~~~~~~~~~~~~~i 207 (406)
T 1ued_A 154 DPVGAHALC-ELLGIPRDD--QR---EFVR---RIRRNAD-----L--SRG---L--KA----RA-ADSAAFNRYLDNLL 207 (406)
T ss_dssp HHHHHHHHH-HHHTCCHHH--HH---HHHH---HHHHCC----------CC---H--HH----HH-HHHHHHHHHHHHHH
T ss_pred HHhHHHHHH-HHcCCCHHH--HH---HHHH---HHHHHHh-----c--cCC---H--HH----HH-HHHHHHHHHHHHHH
Confidence 4 6668888 579985421 11 1111 1111111 0 001 0 11 11 11234566777888
Q ss_pred HHHHhhhhcccCCCcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 259 EERKKLASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 259 ~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
++|++ ++ ..|+++.|++.. +..++++++..++.++++||++|
T Consensus 208 ~~r~~--~~-------~~d~l~~ll~~~-~~~ls~~ei~~~~~~l~~AG~dT 249 (406)
T 1ued_A 208 ARQRA--DP-------DDGLLGMIVRDH-GDNVTDEELKGLCTALILGGVET 249 (406)
T ss_dssp HHHHH--SC-------CSSHHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CC-------CCCHHHHHHHhc-CCCCCHHHHHHHHHHHHHHhhHH
Confidence 87775 11 134999999765 34699999999999999999874
No 30
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.87 E-value=6.4e-21 Score=170.73 Aligned_cols=233 Identities=15% Similarity=0.174 Sum_probs=155.3
Q ss_pred CCCCCCCCCcccccccccCCCcchHHHHHHHHhh-CCeEEEEe-cCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhh
Q 021610 32 KLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKY-GDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI 109 (310)
Q Consensus 32 ~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~y-G~v~~~~~-g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~ 109 (310)
..||||+++|.+.....+..+ ++..+.+| ++| |||+++++ |+.++++++||++++++|.++. |++++....+..
T Consensus 5 ~~~~~~~~~P~~~~~~~~~~~-p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~ 80 (412)
T 2zbx_A 5 ATTPQTTDAPAFPSNRSCPYQ-LPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDPR--LSSNRTDDNFPA 80 (412)
T ss_dssp ---CCCCSSCBSSCCCSSTTS-CCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCTT--EECCTTSTTSCC
T ss_pred CCCCCCCCCCCCCCCchhccC-hHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCcc--cccCcccccccc
Confidence 457899988876333334444 88899999 788 99999998 8999999999999999998653 555543111111
Q ss_pred -------hcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHH-H
Q 021610 110 -------FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQL-M 181 (310)
Q Consensus 110 -------~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~-~ 181 (310)
+...+ +.++..+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+. ++.++....+.. .
T Consensus 81 ~~~~~~~~~~~~-~~l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~----g~~~d~~~~~~~~~ 154 (412)
T 2zbx_A 81 TSPRFEAVRESP-QAFIGLDPPEHGTRRRMT-ISEFTVKRIKGMRPEVEEVVHGFLDEMLAA----GPTADLVSQFALPV 154 (412)
T ss_dssp CSGGGC----CC-CCGGGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHH----CSCEEHHHHTTTHH
T ss_pred cccccccccccc-cccccCCcHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCccHHHHHHHHH
Confidence 10012 236778999999999987 488999999999999999999999999741 124555555543 5
Q ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 021610 182 MYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEER 261 (310)
Q Consensus 182 ~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r 261 (310)
+.++|+. +||.+.+. ... +..... .+... .+ + +.. . ...+.+..++..+|++|
T Consensus 155 ~~~vi~~-~~G~~~~~--~~~---~~~~~~---~~~~~--------~~---~--~~~----~-~~~~~~~~~~~~~i~~r 207 (412)
T 2zbx_A 155 PSMVICR-LLGVPYAD--HEF---FQDASK---RLVQS--------TD---A--QSA----L-TARNDLAGYLDGLITQF 207 (412)
T ss_dssp HHHHHHH-HHTCCGGG--HHH---HHHHHH---HHHHC--------SS---H--HHH----H-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHH--HHH---HHHHHH---HHhcc--------Cc---H--HHH----H-HHHHHHHHHHHHHHHHH
Confidence 6677876 79986532 111 111111 11110 01 1 111 1 11234556777888887
Q ss_pred HhhhhcccCCCcchhcHHHHHHhhhcC-CCCCHHHHHHHHHHHhhccccC
Q 021610 262 KKLASTKSMSNESLKCAIDHILDAQTK-GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 262 ~~~~~~~~~~d~~~~~ll~~ll~~~~~-~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
++. + . .|+++.|++..++ ..++++++..++.++++||++|
T Consensus 208 ~~~--~--~-----~d~l~~ll~~~~~~~~ls~~ei~~~~~~~~~AG~dT 248 (412)
T 2zbx_A 208 QTE--P--G-----AGLVGALVADQLANGEIDREELISTAMLLLIAGHET 248 (412)
T ss_dssp HHS--C--C-----SSHHHHHHHTTTTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HhC--C--C-----CCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 761 1 1 3499999976533 3699999999999999999874
No 31
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.87 E-value=4.4e-23 Score=183.40 Aligned_cols=148 Identities=17% Similarity=0.235 Sum_probs=122.9
Q ss_pred CCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCC-CcchhhhhcCC
Q 021610 35 PGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRT-RNVVFDIFTGK 113 (310)
Q Consensus 35 pgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~-~~~~~~~~~~~ 113 (310)
|+++.+|++||++++..+ ++..+.+|.++|||+++ ++|+.++++++||++++++|.++ .|++++ .......+.+.
T Consensus 2 ~~~~~~p~iGnl~~~~~~-p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~g~ 77 (389)
T 1n97_A 2 KRLSLREAWPYLKDLQQD-PLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLTGR 77 (389)
T ss_dssp EECCHHHHHHHHHHHHHC-HHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHHCS
T ss_pred cccccccccccHHHHhhC-hHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHhCC
Confidence 567789999999988544 78889999999999999 99999999999999999999877 788876 22223334443
Q ss_pred CceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHHHHhcc
Q 021610 114 GQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDR 193 (310)
Q Consensus 114 ~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fg~ 193 (310)
+ ++..+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|. ++.++....+...+++++++++||.
T Consensus 78 ~---l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~------~~~~dl~~~~~~~~~~vi~~~~fG~ 147 (389)
T 1n97_A 78 G---LLTDWGESWKEARKAL-KDPFLPKNVRGYREAMEEEARAFFGEWR------GEERDLDHEMLALSLRLLGRALFGK 147 (389)
T ss_dssp S---TTTCCHHHHHHHHHHH-CGGGSHHHHHTTHHHHHHHHHHHHHTCC------SCCEEHHHHHHHHHHHHHHHHHHSS
T ss_pred c---cccCCcHHHHHHHHHh-CcccCHHHHHHHHHHHHHHHHHHHHHcc------CCcCcHHHHHHHHHHHHHHHHHcCC
Confidence 3 5678899999999987 5899999999999999999999999886 1246667777788889999999999
Q ss_pred ccC
Q 021610 194 RFE 196 (310)
Q Consensus 194 ~~~ 196 (310)
+++
T Consensus 148 ~~~ 150 (389)
T 1n97_A 148 PLS 150 (389)
T ss_dssp CCC
T ss_pred cch
Confidence 775
No 32
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.87 E-value=8.5e-21 Score=170.09 Aligned_cols=237 Identities=14% Similarity=0.097 Sum_probs=155.5
Q ss_pred CCCCCCCcccccccccCCCcchHHHHHHHHhh-CCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcc--hhhhh
Q 021610 34 PPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKY-GDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV--VFDIF 110 (310)
Q Consensus 34 ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~y-G~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~--~~~~~ 110 (310)
|||| |++||++++..+ ++..+.++.++| |||+++++++.+++++++|+.++ ++.+. ..|+.++..+ ....+
T Consensus 4 pPg~---P~iG~~~~~~~~-p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~ 77 (415)
T 3awm_A 4 TPHT---KGPDETLSLLAD-PYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTL 77 (415)
T ss_dssp --------CCCCHHHHHHS-TTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTT
T ss_pred CCCC---CccchHHHHHhC-hHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhc
Confidence 6766 899999887655 788999999999 79999999888999999999986 66544 4576654221 22223
Q ss_pred cCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHHHH
Q 021610 111 TGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIM 190 (310)
Q Consensus 111 ~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 190 (310)
.+ .+.++..+|+.|+++|+++ .+.|+++.++.+.+.+.+.++++++.|.+. +.++....+...++++|+++
T Consensus 78 ~g--~~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~~~~~-----~~vdl~~~~~~~~~~vi~~~- 148 (415)
T 3awm_A 78 LG--QGGVQGLDGETHRHRKQMF-MGLMTPERVRALAQLFEAEWRRAVPGWTRK-----GEIVFYDELHEPLTRAVCAW- 148 (415)
T ss_dssp SC--SSSGGGCCHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-----SEEEHHHHHHHHHHHHHHHH-
T ss_pred cC--CcceeecCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHhhccC-----CcEeHHHHHHHHHHHHHHHH-
Confidence 33 2236778999999999987 599999999999999999999999999641 24566666777778899998
Q ss_pred hccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccC
Q 021610 191 FDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSM 270 (310)
Q Consensus 191 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~ 270 (310)
||.+.+.. . .... ...+..+...+ +.+.+.... .. ...+.+..++..+|++|++....
T Consensus 149 ~G~~~~~~--~-~~~~---~~~~~~~~~~~--------~~~~~~~~~----~~-~~~~~~~~~~~~~i~~r~~~~~~--- 206 (415)
T 3awm_A 149 AGVPLPDD--E-AGNR---AGELRALFDAA--------GSASPRHLW----SR-LARRRVDAWAKRIIEGIRAGSIG--- 206 (415)
T ss_dssp HTCCCCGG--G-HHHH---HHHHHHHHHST--------TCSSHHHHH----HH-HHHHHHHHHHHHHHHHHHHTSSC---
T ss_pred cCCCCCcc--h-HHHH---HHHHHHHHHHh--------cccCchHHH----HH-HHHHHHHHHHHHHHHHHHHhhhc---
Confidence 89876431 1 1111 11111111111 111111111 11 11234567788888887762111
Q ss_pred CCcchhcHHHHHHhhhc-CC-CCCHHHHHHHHHHHhhccccC
Q 021610 271 SNESLKCAIDHILDAQT-KG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 271 ~d~~~~~ll~~ll~~~~-~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
....|+++.|++..+ ++ .++++++..++..++ ||++|
T Consensus 207 --~~~~d~l~~ll~~~~~~g~~~~~~~~~~~~~~~~-ag~~t 245 (415)
T 3awm_A 207 --SGSGTAAYAIAWHRDRHDDLLSPHVAAVELVNVL-RPTVA 245 (415)
T ss_dssp --CCTTSHHHHHHHCBCTTSCBCCHHHHHHHHHHHH-HHHHT
T ss_pred --CCCCCHHHHHHhhhhccCCCCCHHHHHHHHHHHH-Hhhhh
Confidence 123469999997642 33 588888888877665 78764
No 33
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.86 E-value=5.1e-21 Score=172.45 Aligned_cols=240 Identities=12% Similarity=0.117 Sum_probs=156.3
Q ss_pred CCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEE--------ecCeeEEEEcCHHHHHHHHHhcCcccCC
Q 021610 29 KRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLR--------MGQRNLVVVSSPDHAKEVLHTQGVEFGS 100 (310)
Q Consensus 29 ~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~--------~g~~~~vvi~~pe~i~evl~~~~~~f~~ 100 (310)
+....||+|.++++++....-.. .|+..+.++ ++||||+++. +|+.++++|++|++|++||.+. ..|++
T Consensus 15 ~~~~~p~~~~~~~~~~~~~~~~~-~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~~-~~fs~ 91 (433)
T 3ivy_A 15 TTVPSPNLPPGFDFTDPAIYAER-LPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHS-DVFSS 91 (433)
T ss_dssp -----CCCCTTCCTTCHHHHTTC-CCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHCT-TTEES
T ss_pred cccCCCCCCCCCCCCCHHHhhcC-CccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcCh-hhccC
Confidence 34567888888887765543223 378889999 7899999999 6668999999999999999644 66888
Q ss_pred CCCcchhh--------hhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCCh
Q 021610 101 RTRNVVFD--------IFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGI 172 (310)
Q Consensus 101 R~~~~~~~--------~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 172 (310)
++...... .... +...++..+|+.|+++||++ .+.|+++.++.+.+.+.++++++++.|.+. +.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-----~~~ 164 (433)
T 3ivy_A 92 YENGVIPRFKNDIAREDIEV-QRFVMLNMDAPHHTRLRKII-SRGFTPRAVGRLHDELQERAQKIAAEAAAA-----GSG 164 (433)
T ss_dssp TTTCSCCCCCTTCCHHHHHG-GGGSGGGCCTTHHHHHHHHH-GGGSCHHHHHTTHHHHHHHHHHHHHHHHHH-----CEE
T ss_pred Cccccccccccccccccccc-ccCCccccChHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhhC-----CCe
Confidence 76432221 1111 12236789999999999987 599999999999999999999999999731 235
Q ss_pred hHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHh
Q 021610 173 VLRRRL-QLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQ 251 (310)
Q Consensus 173 ~~~~~~-~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~ 251 (310)
+....+ ...++++|+++ ||.+. +....+. .....+ +. ...|.+.+. ...+. .+.+.
T Consensus 165 d~~~~~~~~~~~~vi~~l-~G~~~-----~~~~~~~---~~~~~~---~~----~~~p~~~~~--~~~~~-----~~~~~ 221 (433)
T 3ivy_A 165 DFVEQVSCELPLQAIAGL-LGVPQ-----EDRGKLF---HWSNEM---TG----NEDPEYAHI--DPKAS-----SAELI 221 (433)
T ss_dssp EHHHHTTSHHHHHHHHHH-HTCCH-----HHHHHHH---HHHTTC---SC----CCCGGGTTC--CHHHH-----HHHHH
T ss_pred eHHHHHHHHHHHHHHHHH-cCCCH-----HHHHHHH---HHHHHH---hc----cCCchhhhH--HHHHH-----HHHHH
Confidence 555665 67777889996 89632 1111111 111111 11 112322110 11111 12355
Q ss_pred HHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcCC-CCCHHHHHHHHHHHhhccccC
Q 021610 252 LFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 252 ~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.++..+|++|++. + ..|+++.|++...++ .++++++..++.++++||++|
T Consensus 222 ~~~~~~i~~r~~~--~-------~~dll~~ll~~~~~~~~ls~~ei~~~~~~ll~AG~dT 272 (433)
T 3ivy_A 222 GYAMKMAEEKAKN--P-------ADDIVTQLIQADIDGEKLSDDEFGFFVVMLAVAGNET 272 (433)
T ss_dssp HHHHHHHHHC----------------CHHHHHSCC--CCCCCHHHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHHhcC--C-------CCcHHHHHHhhhcCCCCCCHHHHHHHHHHHHHhhhHH
Confidence 6677778776651 1 235999999765443 699999999999999999874
No 34
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.86 E-value=3.5e-20 Score=166.22 Aligned_cols=236 Identities=11% Similarity=0.114 Sum_probs=156.6
Q ss_pred CCCcccccccccCCCcchHHHHHHHHhhC-CeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcc--hhhhhcCCC
Q 021610 38 LPVPVFGNWLQVGDDLNHRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV--VFDIFTGKG 114 (310)
Q Consensus 38 ~~~pilGn~~~l~~~~~~~~~~~~~~~yG-~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~--~~~~~~~~~ 114 (310)
++.|++||++++..+ ++..+.++.++|| |||++++++.+++++++|++++.++ +. ..|+.++..+ ....+.|
T Consensus 6 Pg~P~lG~~~~~~~~-p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~~~g-- 80 (417)
T 1izo_A 6 PHDKSLDNSLTLLKE-GYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-DT-DRFQRQNALPKRVQKSLFG-- 80 (417)
T ss_dssp CBCCCTTHHHHHHHH-GGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-CT-TTEECTTCSCHHHHTTTTC--
T ss_pred CCCCccchHHHHhhC-cHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-cc-cccccccccccchhhhhcc--
Confidence 344999999987654 7889999999998 8999999989999999999998543 32 3566543221 2222333
Q ss_pred ceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHHHHhccc
Q 021610 115 QDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRR 194 (310)
Q Consensus 115 ~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fg~~ 194 (310)
.+.++..+|+.|+++|+++ .+.|+++.++.+.+.+.++++++++.|.+. +.++....+...++++|+++ ||.+
T Consensus 81 ~~~l~~~dg~~h~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~-----~~~dl~~~~~~~~~~vi~~~-~G~~ 153 (417)
T 1izo_A 81 VNAIQGMDGSAHIHRKMLF-LSLMTPPHQKRLAELMTEEWKAAVTRWEKA-----DEVVLFEEAKEILCRVACYW-AGVP 153 (417)
T ss_dssp TTCGGGCCHHHHHHHHHHH-HHTSSHHHHHHHHHHHHHHHHHHHHHHTTS-----SEEEHHHHHHHHHHHHHHHH-HTCC
T ss_pred ccceeecCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHhcC-----CCeeHHHHHHHHHHHHHHHH-cCCC
Confidence 2236778999999999987 589999999999999999999999999642 24566666777778899998 6987
Q ss_pred cCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcc
Q 021610 195 FESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNES 274 (310)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~ 274 (310)
++.. ...+....+. .+...+. ...| .... .. ...+.+..++..+|++|++.... ..
T Consensus 154 ~~~~--~~~~~~~~~~----~~~~~~~----~~~~----~~~~----~~-~~~~~~~~~~~~~i~~r~~~~~~-----~~ 209 (417)
T 1izo_A 154 LKET--EVKERADDFI----DMVDAFG----AVGP----RHWK----GR-RARPRAEEWIEVMIEDARAGLLK-----TT 209 (417)
T ss_dssp CCTT--THHHHHHHHH----HHHHHTT----CCSH----HHHH----HH-HHHHHHHHHHHHHHHHHHTTSSC-----CC
T ss_pred CCch--HHHHHHHHHH----HHHhhcc----cCCc----cchh----HH-HHHHHHHHHHHHHHHHHHhhccC-----CC
Confidence 6542 1111111111 1111110 0111 1111 11 11234567788888888762111 12
Q ss_pred hhcHHHHHHhhhc-CC-CCCHHHHHHHHHHHhhccccC
Q 021610 275 LKCAIDHILDAQT-KG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 275 ~~~ll~~ll~~~~-~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
..|+++.|++..+ ++ .++++++..++..++ ||++|
T Consensus 210 ~~d~l~~ll~~~~~~g~~l~~~~~~~~~~~~~-ag~~t 246 (417)
T 1izo_A 210 SGTALHEMAFHTQEDGSQLDSRMAAIELINVL-RPIVA 246 (417)
T ss_dssp TTSHHHHHHHCBCTTSCBCCHHHHHHHHHHHH-HHHHT
T ss_pred cCCHHHHHHHhccccCCCCCHHHHHHHHHHHH-hhhhH
Confidence 3469999997642 33 588888888877665 78764
No 35
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.85 E-value=1.7e-21 Score=177.49 Aligned_cols=249 Identities=12% Similarity=0.113 Sum_probs=146.2
Q ss_pred CCCCCCCCCCCC-CcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCc-c
Q 021610 28 GKRFKLPPGPLP-VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN-V 105 (310)
Q Consensus 28 ~~~~~~ppgP~~-~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~-~ 105 (310)
++..+.||||++ +|++||++++..+ ++..+.+|+++||++|++++|+.+++|++||+++++++.++.. ++.++.. .
T Consensus 14 ~~~~~~pPgp~~~~P~iG~~~~~~~~-~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~~ 91 (475)
T 3b98_A 14 TRRRNEPPLDKGMIPWLGHALEFGKD-AAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQV 91 (475)
T ss_dssp CCCTTCCCEECCSSTTTBTHHHHHHC-HHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHHH
T ss_pred ccCCCCCCCCCCCcchHHhHHHHhhC-HHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHHH
Confidence 344568999998 9999999988654 7889999999999999999999999999999999999976542 4433211 1
Q ss_pred hhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCc-ccccCChhHHHHHHHHHHH
Q 021610 106 VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDP-EAATNGIVLRRRLQLMMYN 184 (310)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~~~~~~~~~~ 184 (310)
......+.+ ++..+|+.|| +++ .+.|+++.++.+.+.+.+++.++++.+.... ......++........+++
T Consensus 92 ~~~~~~g~~---~~~~~~~~~R---~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (475)
T 3b98_A 92 LMKRIFNMI---LPSHNPESEK---KRA-EMHFQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFK 164 (475)
T ss_dssp HHHHTTCCC---CTTCCHHHHH---HHH-HHHTSHHHHHHHHHHHHHHHHHHSSTTTTTCSSCSCEEEEHHHHHHHHHHH
T ss_pred HHHHHhCCC---CCCCChHHHH---HHH-HHHcChhhHHHHHHHHHHHHHHHHhhcccccCCCCceeehHHHHHHHHHHH
Confidence 222233332 3456677664 444 3689999999999999999998888765321 1000122333333334444
Q ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccc-cchh-hHHHHHHHHHHHHHhHHHHHHHHHHH
Q 021610 185 NMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR-PFLR-GYLKICKEVKERRLQLFKDYFVEERK 262 (310)
Q Consensus 185 ~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~-~~~~-~~~~~~~~~~~~~~~~~~~~~i~~r~ 262 (310)
+++...||.+ ..+.. .+..+...+.. +.+.+|++. .++. ...+... +....+.+.+++++.
T Consensus 165 ~~~~~~~g~~--~~~~~---~~~~~~~~~~~--------~~~~~p~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 227 (475)
T 3b98_A 165 TGYLTVFGAE--NNNSA---ALTQIYEEFRR--------FDKLLPKLARTTVNKEEKQIAS----AAREKLWKWLTPSGL 227 (475)
T ss_dssp HHHHHHHCCT--TSCHH---HHHHHHHHHHH--------HHHHHHHHHTTCCCHHHHHHHH----HHHHHHHHHHSCTTS
T ss_pred HhhhheeCCc--cccch---hcHHHHHHHHH--------HHhhhHHHHHHhcChhhhHHHH----HHHHHHHHHHHHHHh
Confidence 5555566632 11111 12221111111 113344332 1111 1111111 111111222222221
Q ss_pred hhhhcccCCCcchhcHHHHHHhhh-cCCCCCHHHHHHHHHHHhhccccC
Q 021610 263 KLASTKSMSNESLKCAIDHILDAQ-TKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 263 ~~~~~~~~~d~~~~~ll~~ll~~~-~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+ + .+...|+++.+++.. +++.++++++. .+.++++||++|
T Consensus 228 ~--~-----~~~~~d~l~~ll~~~~~~~~~~~~~i~-~~~~~l~ag~~T 268 (475)
T 3b98_A 228 D--R-----KPREQSWLGSYVKQLQDEGIDAEMQRR-AMLLQLWVTQGN 268 (475)
T ss_dssp C--C-----CCCTTSHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHSS
T ss_pred h--c-----cccccHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHcccc
Confidence 1 1 123457999999754 34468888988 889999999875
No 36
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.85 E-value=3.6e-20 Score=165.97 Aligned_cols=235 Identities=14% Similarity=0.103 Sum_probs=157.9
Q ss_pred CCCCCCCCCCCCCccc--ccccccC----CCcchHHHHHHHHhhC--CeEEEE-ecCeeEEEEcCHHHHHHHHHhcCccc
Q 021610 28 GKRFKLPPGPLPVPVF--GNWLQVG----DDLNHRNLSDLAKKYG--DVLLLR-MGQRNLVVVSSPDHAKEVLHTQGVEF 98 (310)
Q Consensus 28 ~~~~~~ppgP~~~pil--Gn~~~l~----~~~~~~~~~~~~~~yG--~v~~~~-~g~~~~vvi~~pe~i~evl~~~~~~f 98 (310)
.++.++||||++.|.. +.+-.+. ...++..+.+|. +|| +||+++ +| ++++++||++++++|.+ ...|
T Consensus 7 ~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~-~~~f 82 (415)
T 2zwu_A 7 QSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYED-YRHF 82 (415)
T ss_dssp ----CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHC-TTTE
T ss_pred cCccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcC-cccc
Confidence 3456799999999864 5431111 123778888894 799 999999 66 69999999999999964 4578
Q ss_pred CCCC-CcchhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHH
Q 021610 99 GSRT-RNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRR 177 (310)
Q Consensus 99 ~~R~-~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ 177 (310)
++|+ ......... +.+.++..+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+. +.++....
T Consensus 83 ~~~~~~~~~~~~~~--~~~~l~~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~-----~~~d~~~~ 154 (415)
T 2zwu_A 83 SSECPFIPREAGEA--YDFIPTSMDPPEQRQFRALA-NQVVGMPVVDKLENRIQELACSLIESLRPQ-----GQCNFTED 154 (415)
T ss_dssp ETTSCSSSHHHHHH--CCCTTTTCCTTTTHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHGGG-----TEEEHHHH
T ss_pred CCCcccCCCCcccc--ccccCccCCCcHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCccHHHH
Confidence 8886 222222111 22214567899999999987 489999999999999999999999999752 23555554
Q ss_pred H-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHH
Q 021610 178 L-QLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDY 256 (310)
Q Consensus 178 ~-~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (310)
+ ...++++|+++ ||.+.+. .+. +..... .+... ..|. ...+. .+.+..++..
T Consensus 155 ~~~~~~~~vi~~~-~G~~~~~--~~~---~~~~~~---~~~~~-------~~P~------~~~~~-----~~~~~~~~~~ 207 (415)
T 2zwu_A 155 YAEPFPIRIFMLL-AGLPEED--IPH---LKYLTD---QMTRP-------DGSM------TFAEA-----KEALYDYLIP 207 (415)
T ss_dssp TTTHHHHHHHHHH-HTCCGGG--HHH---HHHHHH---HHHSC-------CSSS------CHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHH--HHH---HHHHHH---HHHhc-------cCHH------HHHHH-----HHHHHHHHHH
Confidence 4 46777899998 9987642 111 111111 11111 0132 11111 1235567778
Q ss_pred HHHHHHhhhhcccCCCcchhcHHHHHHhhhcCC-CCCHHHHHHHHHHHhhccccC
Q 021610 257 FVEERKKLASTKSMSNESLKCAIDHILDAQTKG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 257 ~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+|++|++ ++ ..|+++.|++...++ .++++++..++.++++||++|
T Consensus 208 ~i~~r~~--~~-------~~dll~~ll~~~~~~~~l~~~~i~~~~~~l~~AG~dT 253 (415)
T 2zwu_A 208 IIEQRRQ--KP-------GTDAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDT 253 (415)
T ss_dssp HHHHHHH--SC-------CSSHHHHHHTCEETTEECCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHh--CC-------CCCHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHhHhH
Confidence 8888776 11 134999999764333 599999999999999999875
No 37
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.84 E-value=4.5e-20 Score=163.69 Aligned_cols=214 Identities=11% Similarity=0.089 Sum_probs=147.1
Q ss_pred cchHHHHHHHHhhCCeEEEEecC----eeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcCCCceeEeccCChhHHH
Q 021610 53 LNHRNLSDLAKKYGDVLLLRMGQ----RNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRK 128 (310)
Q Consensus 53 ~~~~~~~~~~~~yG~v~~~~~g~----~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~ 128 (310)
.|+..+.+| ++||||+++++|+ .++++++||++++++| ++...|++|+....... ...+.+.++..+|+.|++
T Consensus 13 ~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~ 89 (384)
T 3oo3_A 13 DPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPVDDEAD-RALLPGILQAYDPPDHTR 89 (384)
T ss_dssp EECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCCC------CCCTTCGGGCCTTHHHH
T ss_pred ChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCcccccccc-ccccccccccCCChhHHH
Confidence 388899999 5999999999987 8999999999999999 55578998875432221 112234467789999999
Q ss_pred HHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Q 021610 129 MRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKA 208 (310)
Q Consensus 129 ~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~ 208 (310)
+||.+ .+.|+++.++.+.+.+.++++++++.|.+. ++.++....+...+.++++..+||.+.+. ... +..
T Consensus 90 ~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~----~~~~d~~~~~~~~~~~~v~~~~~G~~~~~--~~~---~~~ 159 (384)
T 3oo3_A 90 LRRTV-APAYSARRMERLRPRIEEIVEECLDDFESV----GAPVDFVRHAAWPIPAYIACEFLGVPRDD--QAE---LSR 159 (384)
T ss_dssp HHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHS----CSSEEHHHHTTTHHHHHHHHHHHTCCGGG--HHH---HHH
T ss_pred HHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCccHHHHHHHHHHHHHHHHHcCCCHHH--HHH---HHH
Confidence 99987 589999999999999999999999999752 23456666666556666666789986542 111 111
Q ss_pred HHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcC
Q 021610 209 LNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTK 288 (310)
Q Consensus 209 ~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~ 288 (310)
... .+.. . +..+...+ ..+.+..++..++++|++ ++ ..|+++.|++.. +
T Consensus 160 ~~~---~~~~---------~----~~~~~~~~-----~~~~~~~~~~~~i~~~~~--~~-------~~d~l~~ll~~~-~ 208 (384)
T 3oo3_A 160 MIR---ESRE---------S----RLPRQRTL-----SGLGIVNYTKRLTSGKRR--DP-------GDGMIGVIVREH-G 208 (384)
T ss_dssp HHH---HHHH---------C----SCHHHHHH-----HHHHHHHHHHHHHHHHHH--SC-------CSSHHHHHHHHH-G
T ss_pred HHH---HHhc---------c----CChHHHHH-----HHHHHHHHHHHHHHHHHh--CC-------CCCHHHHHHHhc-C
Confidence 111 1111 0 11111111 123455677778877765 11 235999999763 3
Q ss_pred CCCCHHHHHHHHHHHhhccccC
Q 021610 289 GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 289 ~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
..++++++...+.++++||++|
T Consensus 209 ~~l~~~~l~~~~~~~~~AG~~T 230 (384)
T 3oo3_A 209 AEISDEELAGLAEGNLIMAAEQ 230 (384)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhHHH
Confidence 4699999999999999999874
No 38
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.84 E-value=5.6e-20 Score=164.30 Aligned_cols=230 Identities=13% Similarity=0.071 Sum_probs=155.2
Q ss_pred CCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEe-cCee-EEEEcCHHHHHHHHHhcCcccCCCCCcchh--
Q 021610 32 KLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRM-GQRN-LVVVSSPDHAKEVLHTQGVEFGSRTRNVVF-- 107 (310)
Q Consensus 32 ~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~-g~~~-~vvi~~pe~i~evl~~~~~~f~~R~~~~~~-- 107 (310)
+.+|||+++|+.++.. .+ |+..+.++. +|||++++++ |+.+ +++++||+++++||.+ ..|++++.....
T Consensus 8 ~~~~~~~~~p~~~~~~---~~-p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~ 80 (406)
T 1s1f_A 8 QAVPPVRDWPAVDLPG---SD-FDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQVT 80 (406)
T ss_dssp CCSCCEEECCCCCCCT---TC-CCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTBC
T ss_pred hhccCCCCCCCCcccc---cC-chHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCcc
Confidence 4678998899888832 33 788888884 7999999996 5665 9999999999999986 368877632211
Q ss_pred --hh-hcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHH
Q 021610 108 --DI-FTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMY 183 (310)
Q Consensus 108 --~~-~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~ 183 (310)
.. ..+.+.+ ++..+|+.|+++||++. +.|+++.++.+.+.++++++++++.|.+. ++.++....+. ..+.
T Consensus 81 ~~~~~~~~~~~~-l~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~----~~~~d~~~~~~~~~~~ 154 (406)
T 1s1f_A 81 RLAPHFIPARGA-VGFLDPPDHTRLRRSVA-AAFTARGVERVRERSRGMLDELVDAMLRA----GPPADLTEAVLSPFPI 154 (406)
T ss_dssp BSSSSCSSCTTS-GGGCCTTHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHHH----CSSEEHHHHTTTHHHH
T ss_pred cccccccccccc-cccCCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCccHHHHHhhHhHH
Confidence 11 2111223 56788999999999875 88999999999999999999999999741 12455555553 4667
Q ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 021610 184 NNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKK 263 (310)
Q Consensus 184 ~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~ 263 (310)
++|+. +||.+.+. ... +...... +.... .| + +...+. .+.+..++..+|++|++
T Consensus 155 ~vi~~-~~G~~~~~--~~~---~~~~~~~---~~~~~-------~~---~--~~~~~~-----~~~~~~~~~~~i~~r~~ 208 (406)
T 1s1f_A 155 AVICE-LMGVPATD--RHS---MHTWTQL---ILSSS-------HG---A--EVSERA-----KNEMNAYFSDLIGLRSD 208 (406)
T ss_dssp HHHHH-HHTCCGGG--HHH---HHHHHHH---HHHHH-------TT---C--CCCHHH-----HTHHHHHHHHHHHTSCC
T ss_pred HHHHH-HhCCCHHH--HHH---HHHHHHH---HHhcc-------CC---H--HHHHHH-----HHHHHHHHHHHHHHHHh
Confidence 88888 59986542 111 1111111 11100 01 0 111111 12345566677776654
Q ss_pred hhhcccCCCcchhcHHHHHHhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 264 LASTKSMSNESLKCAIDHILDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 264 ~~~~~~~~d~~~~~ll~~ll~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.+ ..|+++.|++..++..++++++..++.++++|| +|
T Consensus 209 --~~-------~~d~l~~ll~~~~~~~ls~~el~~~~~~l~~AG-eT 245 (406)
T 1s1f_A 209 --SA-------GEDVTSLLGAAVGRDEITLSEAVGLAVLLQIGG-EA 245 (406)
T ss_dssp --SC-------CCSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHT-TH
T ss_pred --CC-------CCCHHHHHHHhhcccCCCHHHHHHHHHHHHHhh-HH
Confidence 11 135999999765345799999999999999999 85
No 39
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.84 E-value=1.1e-19 Score=162.21 Aligned_cols=214 Identities=11% Similarity=0.126 Sum_probs=146.1
Q ss_pred chHHHHHHHHhhCCeEEEEe-cCeeEEEEcCHHHHHHHHHhcCcccCCCCC--c-chhhhhcCC-CceeEeccCChhHHH
Q 021610 54 NHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTR--N-VVFDIFTGK-GQDMVFTVYGEHWRK 128 (310)
Q Consensus 54 ~~~~~~~~~~~yG~v~~~~~-g~~~~vvi~~pe~i~evl~~~~~~f~~R~~--~-~~~~~~~~~-~~~~~~~~~g~~W~~ 128 (310)
++..+.+| ++||+|+++++ |+.++++++||++++++|.++ .|++++. . ..+..+... +...++..+|+.|++
T Consensus 21 p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h~~ 97 (403)
T 3aba_A 21 PPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSLLWQDEPEHTS 97 (403)
T ss_dssp CCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCCTTCCTTHHHH
T ss_pred hhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--CcccccccccccccccccccccccccccCCchhHHH
Confidence 78888999 89999999998 899999999999999999875 4777742 1 111111110 112356789999999
Q ss_pred HHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHHHHHHHHHhccccCCCCchHHHHHH
Q 021610 129 MRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNMYRIMFDRRFESQDDPLFNRLK 207 (310)
Q Consensus 129 ~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fg~~~~~~~~~~~~~~~ 207 (310)
+||++. +.|+++.++.+.+.+.++++++++.|.+ . ++.++....+. ..+.++|+. +||.+.+. ... +.
T Consensus 98 ~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~-~---~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~~---~~ 166 (403)
T 3aba_A 98 DRKLLA-KEFTVRRMQALRPNIQRIVDEHLDAIEA-R---GGPVDLVKTFANAVPSMVISD-LFGVPVER--RAE---FQ 166 (403)
T ss_dssp HHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHHHHH-H---CSCEEHHHHTTTHHHHHHHHH-HHTCCGGG--HHH---HH
T ss_pred HHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHh-c---CCCccHHHHHHHHHHHHHHHH-HcCCCHHH--HHH---HH
Confidence 999874 8899999999999999999999999974 1 23455554553 466788887 69986532 111 11
Q ss_pred HHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhc
Q 021610 208 ALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQT 287 (310)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~ 287 (310)
.... .+... . .| | +... ...+.+..++..+|++|++ ++ . .|+++.|++..+
T Consensus 167 ~~~~---~~~~~---~----~~---p--~~~~-----~~~~~~~~~~~~~i~~r~~--~~--~-----~dll~~ll~~~~ 217 (403)
T 3aba_A 167 DIAE---AMMRV---D----QD---A--AATE-----AAGMRLGGLLYQLVQERRA--NP--G-----DDLISALITTED 217 (403)
T ss_dssp HHHH---HHSBS---S----SC---H--HHHH-----HHHHHHHHHHHHHHHHHHH--SC--C-----SSHHHHHHTSCC
T ss_pred HHHH---HHHhc---c----Cc---H--HHHH-----HHHHHHHHHHHHHHHHHHh--CC--C-----CCHHHHHHhhcc
Confidence 1111 11110 0 01 1 1111 1123456677788888776 11 1 349999997654
Q ss_pred CC-CCCHHHHHHHHHHHhhccccC
Q 021610 288 KG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 288 ~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
++ .++++++..++.++++||++|
T Consensus 218 ~~~~l~~~ei~~~~~~l~~AG~dT 241 (403)
T 3aba_A 218 PDGVVDDMFLMNAAGTLLIAAHDT 241 (403)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33 699999999999999999874
No 40
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.84 E-value=6.2e-20 Score=164.10 Aligned_cols=218 Identities=13% Similarity=0.147 Sum_probs=144.0
Q ss_pred ccCCCcchHHHHHHHHhhCCeEEEEe-cCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhh---hcCC---CceeEec
Q 021610 48 QVGDDLNHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI---FTGK---GQDMVFT 120 (310)
Q Consensus 48 ~l~~~~~~~~~~~~~~~yG~v~~~~~-g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~---~~~~---~~~~~~~ 120 (310)
.+..+ ++..+.+| ++||||+++++ |+.++|+++||++++++|.++. |++++....+.. +... ..+.++.
T Consensus 21 ~~~~~-p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 96 (408)
T 3abb_A 21 TCPYQ-PPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDPR--LSSDWGHPDFPVVVRRTEDRGGLAFPLIG 96 (408)
T ss_dssp SSTTS-CCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCTT--EECCTTSTTCCCCC---------CCTTTT
T ss_pred ccccC-chHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCCC--cccccccccccccccCCcccccccccccc
Confidence 34444 78899999 89999999998 8999999999999999998753 555542111110 1110 0113567
Q ss_pred cCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHH-HHHHHHHHHHhccccCCCC
Q 021610 121 VYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQL-MMYNNMYRIMFDRRFESQD 199 (310)
Q Consensus 121 ~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~fg~~~~~~~ 199 (310)
.+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+. ++.++....+.. .+.++|+. +||.+.+.
T Consensus 97 ~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~----g~~~d~~~~~~~~~~~~vi~~-~~G~~~~~-- 168 (408)
T 3abb_A 97 VDDPVHARQRRML-IPSFGVKRMNAIRPRLQSLVDRLLDDMLAK----GPGADLVSAFALPVPSVAICE-LLGVPYGD-- 168 (408)
T ss_dssp CCTTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHT----CSCEEHHHHTTTHHHHHHHHH-HHTCCGGG--
T ss_pred CCchHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCeehHHHHHHHHHHHHHHH-HhCCCHHH--
Confidence 8999999999987 489999999999999999999999999742 124555555543 55677876 79986532
Q ss_pred chHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHH
Q 021610 200 DPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAI 279 (310)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll 279 (310)
... +..... .+.. .. .| +...+ . .+.+..++..+|++|++. + . .|++
T Consensus 169 ~~~---~~~~~~---~~~~---~~----~~--~~~~~----~-----~~~~~~~~~~~i~~r~~~--~--~-----~d~l 215 (408)
T 3abb_A 169 HDF---FEECSR---NFVG---AA----TS--AEADA----A-----FGELYTYLHGLVGRKQAE--P--E-----DGLL 215 (408)
T ss_dssp HHH---HHHHHH---HHC---------------CCSS----H-----HHHHHHHHHHHHHHHHHS--C--C-----SSHH
T ss_pred HHH---HHHHHH---HHhc---cc----ch--HHHHH----H-----HHHHHHHHHHHHHHHHhC--C--C-----CCHH
Confidence 111 111111 1111 00 01 11111 0 123455677778777651 1 1 3499
Q ss_pred HHHHhhhc-CCCCCHHHHHHHHHHHhhccccC
Q 021610 280 DHILDAQT-KGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 280 ~~ll~~~~-~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+.|++..+ ...++++++..++.++++||++|
T Consensus 216 ~~ll~~~~~~~~ls~~ei~~~~~~l~~AG~dT 247 (408)
T 3abb_A 216 DELIARQLEEGDLDHDEVVMIALVLLVAGHET 247 (408)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99997653 33699999999999999999874
No 41
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.84 E-value=3.9e-20 Score=165.58 Aligned_cols=237 Identities=13% Similarity=0.108 Sum_probs=149.7
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccC
Q 021610 20 AITVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFG 99 (310)
Q Consensus 20 ~~~~~~~~~~~~~~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~ 99 (310)
++++++....+.+-+|||+ ++ ..++..+.++.+ |||| |+|+.+.++++||++++++|.++ +.|+
T Consensus 7 ~~~iyr~~~~pl~~~PGp~----~~-------~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~ 70 (411)
T 2jjn_A 7 TTCCARRTLTTIDEVPGMA----DE-------TALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFS 70 (411)
T ss_dssp ----------CCCSCCCSS----CH-------HHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEE
T ss_pred hHHhhhcccCCCCCCCCcc----cc-------cChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-cccc
Confidence 3344443334455567776 11 237888889976 9998 68878899999999999999865 4788
Q ss_pred CCCCcchhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-
Q 021610 100 SRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL- 178 (310)
Q Consensus 100 ~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~- 178 (310)
+|+... .......+ ..++..+|+.|+++||++ .+.|+++.++.+.+.++++++++++. . ++.++....+
T Consensus 71 ~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~--~-----~~~~d~~~~~~ 140 (411)
T 2jjn_A 71 SDPTRV-IEGASPTP-GMIHEIDPPEHRALRKVV-SSAFTPRTISDLEPRIRDVTRSLLAD--A-----GESFDLVDVLA 140 (411)
T ss_dssp SCGGGG-STTCCCCT-TCGGGCCTTHHHHHHHHH-HHHSCHHHHHTTHHHHHHHHHHHHHT--S-----CSEEEHHHHTT
T ss_pred Cccccc-CCcccccc-cccccCCchHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHhc--C-----CCceeHHHHHH
Confidence 886422 12211112 236678899999999987 58999999999999999999999987 2 1235555444
Q ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHH
Q 021610 179 QLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFV 258 (310)
Q Consensus 179 ~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 258 (310)
...++++|+.+ ||.+.+.. +........ +..... . .+++ | .. .++... ..+.+..++..+|
T Consensus 141 ~~~~~~vi~~~-fG~~~~~~-~~~~~~~~~-------~~~~~~-~--~~~~---p--~~-~~~~~~-~~~~~~~~~~~~i 201 (411)
T 2jjn_A 141 FPLPVTIVAEL-LGLPPMDH-EQFGDWSGA-------LVDIQM-D--DPTD---P--AL-AERIAD-VLNPLTAYLKARC 201 (411)
T ss_dssp THHHHHHHHHH-HTCCSCCC-STTCCHHHH-------HHHSCC-S--CTTC---H--HH-HHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHH-HHHHHHHHH-------HHhccC-c--cccc---h--HH-HHHHHH-HHHHHHHHHHHHH
Confidence 35777899998 99876532 221111111 111110 0 1111 1 11 111111 1234566777888
Q ss_pred HHHHhhhhcccCCCcchhcHHHHHHhhhcCC-CCCHHHHHHHHHHHhhccccC
Q 021610 259 EERKKLASTKSMSNESLKCAIDHILDAQTKG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 259 ~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
++|++ ++ ..|+++.|++...++ .++++++..++.++++||++|
T Consensus 202 ~~r~~--~~-------~~d~l~~ll~~~~~~~~l~~~el~~~~~~~~~AG~eT 245 (411)
T 2jjn_A 202 AERRA--DP-------GDDLISRLVLAEVDGRALDDEEAANFSTALLLAGHIT 245 (411)
T ss_dssp HHHHH--SC-------CSSHHHHHHHCCBTTBCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CC-------CCCHHHHHHhcccCCCCCCHHHHHHHHHHHHHhhhHH
Confidence 87775 11 134999999765433 699999999999999999874
No 42
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.84 E-value=2.2e-19 Score=160.34 Aligned_cols=217 Identities=11% Similarity=0.077 Sum_probs=145.5
Q ss_pred chHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcch------hhhhcCCCceeEeccCChhHH
Q 021610 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVV------FDIFTGKGQDMVFTVYGEHWR 127 (310)
Q Consensus 54 ~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~------~~~~~~~~~~~~~~~~g~~W~ 127 (310)
++..+.+| ++||||+++++|+.+++++++|+.++++|.++ ..|++++.... .....+.+ ++..+|+.|+
T Consensus 15 p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~g~~h~ 89 (404)
T 3ejb_B 15 PYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQM---MLFQNQPDHR 89 (404)
T ss_dssp HHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTS---GGGCCTTHHH
T ss_pred chHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcc---hhhcCCchHH
Confidence 77888888 58999999999999999999999999999877 57888774211 11123333 6778999999
Q ss_pred HHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHHHHHHHHHhccccCCCCchHHHHH
Q 021610 128 KMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNMYRIMFDRRFESQDDPLFNRL 206 (310)
Q Consensus 128 ~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fg~~~~~~~~~~~~~~ 206 (310)
++||++ .+.|+++.++.+.+.++++++++++.|.+. +.++....+. ..+.++++. +||.+.+. ... +
T Consensus 90 ~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-----~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~~---~ 157 (404)
T 3ejb_B 90 RLRTLA-SGAFTPRTTESYQPYIIETVHHLLDQVQGK-----KKMEVISDFAFPLASFVIAN-IIGVPEED--REQ---L 157 (404)
T ss_dssp HHHHHH-HGGGSHHHHHTTHHHHHHHHHHHHHTTTTT-----SEEEHHHHTHHHHHHHHHHH-HHTCCGGG--HHH---H
T ss_pred HHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhhhc-----CCcchHHHHHHHHHHHHHHH-HcCCCHHH--HHH---H
Confidence 999987 589999999999999999999999998742 2345544444 355577777 48976432 111 1
Q ss_pred HHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhh
Q 021610 207 KALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQ 286 (310)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~ 286 (310)
...... +...+. .|...... +... ...+.+..++..++++|++ .+ ..|+++.|+...
T Consensus 158 ~~~~~~---~~~~~~------~p~~~~~~----~~~~-~~~~~~~~~~~~~i~~r~~--~~-------~~d~l~~ll~~~ 214 (404)
T 3ejb_B 158 KEWAAS---LIQTID------FTRSRKAL----TEGN-IMAVQAMAYFKELIQKRKR--HP-------QQDMISMLLKGR 214 (404)
T ss_dssp HHHHHH---HHGGGS------TTCCHHHH----HHHH-HHHHHHHHHHHHHHHHHHH--SC-------CSSHHHHHHHC-
T ss_pred HHHHHH---HHHhcc------CCCCHHHH----HHHH-HHHHHHHHHHHHHHHHHHh--CC-------cchHHHHHHhcc
Confidence 111111 111111 13211111 1111 1223456677788887765 11 234999999322
Q ss_pred cCCCCCHHHHHHHHHHHhhccccC
Q 021610 287 TKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 287 ~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+...++++++..++.++++||++|
T Consensus 215 ~~~~ls~~el~~~~~~l~~AG~dT 238 (404)
T 3ejb_B 215 EKDKLTEEEAASTCILLAIAGHET 238 (404)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHcchHH
Confidence 334699999999999999999874
No 43
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.83 E-value=1.6e-19 Score=162.77 Aligned_cols=222 Identities=12% Similarity=0.076 Sum_probs=150.9
Q ss_pred cchHHHHHHHHhhCCeEEEEec-------CeeEEEEcCHHHHHHHHHhcCcccCCCCCc--c-hhhhhcCCCceeEeccC
Q 021610 53 LNHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHTQGVEFGSRTRN--V-VFDIFTGKGQDMVFTVY 122 (310)
Q Consensus 53 ~~~~~~~~~~~~yG~v~~~~~g-------~~~~vvi~~pe~i~evl~~~~~~f~~R~~~--~-~~~~~~~~~~~~~~~~~ 122 (310)
.++..+.+|. +|||||+++++ +.++++|+||+++++||.++ +.|++|+.. . ....+.+.+ ..++..+
T Consensus 45 ~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~-~~l~~~d 121 (435)
T 2wm5_A 45 VRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYF-GSMIVLD 121 (435)
T ss_dssp HHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHH-HGGGGCC
T ss_pred ChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhc-cccccCC
Confidence 3678888995 69999999986 67899999999999999875 478888632 1 122221111 2256678
Q ss_pred ChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccccCCCCch
Q 021610 123 GEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFESQDDP 201 (310)
Q Consensus 123 g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~~~~~~~~ 201 (310)
|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+..+ +..++....+ ..+++++|+++ ||.+.+. .+
T Consensus 122 g~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~--~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~--~~ 195 (435)
T 2wm5_A 122 DPRHQRLRSIV-SRAFTPKVVARIEAAVRDRAHRLVSSMIANNP--DRQADLVSELAGPLPLQIICDM-MGIPKAD--HQ 195 (435)
T ss_dssp TTHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHHHHHHHHHHHCT--TSEEEHHHHTTTHHHHHHHHHH-HTCCGGG--HH
T ss_pred cHHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcEehHHHHHHHHHHHHHHHH-cCCCHHH--HH
Confidence 99999999987 58999999999999999999999999975321 1235555545 46778999999 9987642 11
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHH
Q 021610 202 LFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDH 281 (310)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ 281 (310)
. +..... .+.... .|.+.+.++.. .. ..+.+..++..+|++|++ ++ ..|+++.
T Consensus 196 ~---~~~~~~---~~~~~~-------~p~~~~~~~~~----~~-~~~~~~~~~~~~i~~r~~--~~-------~~dll~~ 248 (435)
T 2wm5_A 196 R---IFHWTN---VILGFG-------DPDLATDFDEF----MQ-VSADIGAYATALAEDRRV--NH-------HDDLTSS 248 (435)
T ss_dssp H---HHHHHH---HHHHTT-------CTTSCCCHHHH----HH-HHHHHHHHHHHHHHHHHH--SC-------CSSHHHH
T ss_pred H---HHHHHH---HHhccC-------CcchhhhHHHH----HH-HHHHHHHHHHHHHHHHhc--CC-------CCCHHHH
Confidence 1 111111 111111 13222222211 11 123456677788888776 11 1349999
Q ss_pred HHhhhcCC-CCCHHHHHHHHHHHhhccccC
Q 021610 282 ILDAQTKG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 282 ll~~~~~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
|++...++ .++++++..++.++++||++|
T Consensus 249 ll~~~~~~~~ls~~ei~~~~~~l~~AG~dT 278 (435)
T 2wm5_A 249 LVEAEVDGERLSSREIASFFILLVVAGNET 278 (435)
T ss_dssp HHHCCBTTBCCCHHHHHHHHHHHHHHTTHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHHhhHH
Confidence 99765444 599999999999999999874
No 44
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.83 E-value=5.1e-19 Score=158.64 Aligned_cols=215 Identities=13% Similarity=0.124 Sum_probs=148.6
Q ss_pred cchHHHHHHHHhhCCeEEEEec-CeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcC------CCceeEeccCChh
Q 021610 53 LNHRNLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTG------KGQDMVFTVYGEH 125 (310)
Q Consensus 53 ~~~~~~~~~~~~yG~v~~~~~g-~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~------~~~~~~~~~~g~~ 125 (310)
+|+..+.+|+++ |||+++++| +.+++||++|++|++||.++ .|++++....+..+.. .....++..+|+.
T Consensus 30 dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~ 106 (417)
T 3tyw_A 30 AAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPFIRTDAPE 106 (417)
T ss_dssp SCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCGGGCCHHH
T ss_pred CchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccchhhcCCcH
Confidence 378899999987 999999997 58999999999999999876 6877642211111111 1223467789999
Q ss_pred HHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHHHHHHHHHhccccCCCCchHHH
Q 021610 126 WRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNMYRIMFDRRFESQDDPLFN 204 (310)
Q Consensus 126 W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fg~~~~~~~~~~~~ 204 (310)
|+++||++ .+.|+++.++.+.+.+.++++++++.|.+. +..++....+. ..+.++|+.+ ||.+.+. ...+.
T Consensus 107 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~----g~~~d~~~~~~~~~~~~vi~~~-~G~~~~~--~~~~~ 178 (417)
T 3tyw_A 107 HTRYRRML-LPAFTVRRVRAMRPAVQARVDEILDGMLAA----GGPVDLVSAYANAVSTSVICEL-LGIPRHD--LEFFR 178 (417)
T ss_dssp HHHHHHHH-GGGGCHHHHHHTHHHHHHHHHHHHHHHHHH----CSSEEHHHHTHHHHHHHHHHHH-HTCCTTT--TTHHH
T ss_pred HHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhh----CCCcchHHHHHHHHHHHHHHHH-hCCCHHH--HHHHH
Confidence 99999987 599999999999999999999999999752 22356666554 4566778887 9987653 22211
Q ss_pred HHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHh
Q 021610 205 RLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILD 284 (310)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~ 284 (310)
. ... .+.. ..+. .+...+ ..+.+..++..+|++|++ ++ ..|+++.|++
T Consensus 179 ~---~~~---~~~~--------~~~~----~~~~~~-----~~~~l~~~~~~~i~~r~~--~~-------~~d~l~~ll~ 226 (417)
T 3tyw_A 179 D---VTR---ISGS--------RNST----AEQVSE-----ALGGLFGLLGGLVAERRE--EP-------RDDLISKLVT 226 (417)
T ss_dssp H---HHH---HHHS--------SSSC----TTHHHH-----HHHHHHHHHHHHHHHHHS--SC-------CSSHHHHHHH
T ss_pred H---HHH---HHhc--------ccCC----HHHHHH-----HHHHHHHHHHHHHHHHhh--CC-------CCCHHHHHHH
Confidence 1 111 1111 0111 111111 123355677788887776 11 1359999997
Q ss_pred hhcC-CCCCHHHHHHHHHHHhhccccC
Q 021610 285 AQTK-GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 285 ~~~~-~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
...+ +.++++++...+.++++||++|
T Consensus 227 ~~~~~~~ls~~el~~~~~~l~~AG~eT 253 (417)
T 3tyw_A 227 DHLVPGNVTTEQLLSTLGITINAGRET 253 (417)
T ss_dssp HTTTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCCCCHHHHHHHHHHHHhhhHHH
Confidence 7543 3699999999999999999874
No 45
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.83 E-value=7.3e-19 Score=157.26 Aligned_cols=212 Identities=11% Similarity=0.144 Sum_probs=147.1
Q ss_pred chHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchh---h-hhcCCCceeEeccCChhHHHH
Q 021610 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF---D-IFTGKGQDMVFTVYGEHWRKM 129 (310)
Q Consensus 54 ~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~---~-~~~~~~~~~~~~~~g~~W~~~ 129 (310)
++..+.+| ++|||++++++|+.+++++++|++++++|.++. |++|+..... . .+.+.....++..+|+.|+++
T Consensus 22 p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h~~~ 98 (411)
T 3a4g_A 22 PHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPMMILMDPPDHTRL 98 (411)
T ss_dssp CHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCCGGGCCTTHHHHH
T ss_pred chHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCcccccccccCCchHHHHH
Confidence 78899999 899999999999999999999999999998763 8887642210 0 111111223677899999999
Q ss_pred HhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHH
Q 021610 130 RRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFESQDDPLFNRLKA 208 (310)
Q Consensus 130 Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~ 208 (310)
||++ .+.|+++.++.+.+.+.++++++++.|.+. +.++....+ ...+.++|+.+ ||.+.+. .+. +..
T Consensus 99 R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----~~vd~~~~~~~~~~~~vi~~~-~G~~~~~--~~~---~~~ 166 (411)
T 3a4g_A 99 RKLV-GRSFTVRRMNELEPRITEIADGLLAGLPTD-----GPVDLMREYAFQIPVQVICEL-LGVPAED--RDD---FSA 166 (411)
T ss_dssp HHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHSCSS-----SCEEHHHHTTTTHHHHHHHHH-HTCCGGG--HHH---HHH
T ss_pred HHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCccHHHHHHHHhHHHHHHHH-hCCCHHH--HHH---HHH
Confidence 9987 589999999999999999999999999742 235554444 35667888875 9986542 111 111
Q ss_pred HHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhc-
Q 021610 209 LNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQT- 287 (310)
Q Consensus 209 ~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~- 287 (310)
... .+.. ..| + +...+ ..+.+..++..+|++|++ ++ ..|+++.|++..+
T Consensus 167 ~~~---~~~~--------~~p---~--~~~~~-----~~~~~~~~~~~~i~~r~~--~~-------~~d~l~~ll~~~~~ 216 (411)
T 3a4g_A 167 WSS---VLVD--------DSP---A--DDKNA-----AMGKLHGYLSDLLERKRT--EP-------DDALLSSLLAVSDE 216 (411)
T ss_dssp HHH---HHTT--------SSC---T--TTHHH-----HHHHHHHHHHHHHHHHHH--SC-------CSSHHHHHHHCCCT
T ss_pred HHH---HHhc--------cCC---H--HHHHH-----HHHHHHHHHHHHHHHHHh--CC-------CCCHHHHHHHhhcc
Confidence 111 1111 012 1 11111 123355677788888776 11 1359999997653
Q ss_pred CC-CCCHHHHHHHHHHHhhccccC
Q 021610 288 KG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 288 ~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
++ .++++++..++.++++||++|
T Consensus 217 ~~~~ls~~ei~~~~~~l~~AG~dT 240 (411)
T 3a4g_A 217 DGDRLSQEELVAMAMLLLIAGHET 240 (411)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHSHH
T ss_pred CCCCCCHHHHHHHHHHHHHhchhh
Confidence 33 699999999999999999874
No 46
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.82 E-value=9.1e-20 Score=165.03 Aligned_cols=228 Identities=13% Similarity=0.092 Sum_probs=149.3
Q ss_pred chHHHHHHHHhhCCeE--EEE-ecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhh---------hcC---CCceeE
Q 021610 54 NHRNLSDLAKKYGDVL--LLR-MGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDI---------FTG---KGQDMV 118 (310)
Q Consensus 54 ~~~~~~~~~~~yG~v~--~~~-~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~---------~~~---~~~~~~ 118 (310)
|+..+.++ ++||||+ +++ +|+.++++|+++++|++||.+. ..|++|+....... ..+ ...+.+
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccCc
Confidence 67777888 6799999 888 7889999999999999999665 67988875322111 111 011247
Q ss_pred eccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccccCC
Q 021610 119 FTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFES 197 (310)
Q Consensus 119 ~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~~~~ 197 (310)
+..+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+. ++.++....+ ..+++++|+++ ||.+.+.
T Consensus 125 ~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~----~~~~dl~~~~~~~~~~~vi~~l-~G~~~~~ 198 (450)
T 3tkt_A 125 VQMDAPKHPKLRRLT-QDWFMPKNLARLDGEIRKIANEAIDRMLGA----GEEGDFMALVAAPYPLHVVMQI-LGVPPED 198 (450)
T ss_dssp GGCCTTHHHHHHHHH-HTTTSHHHHGGGHHHHHHHHHHHHHHHHHT----CSEEEHHHHTTTHHHHHHHHHH-TTCCGGG
T ss_pred ccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCEeeHHHHHHHHHHHHHHHH-cCCChhH
Confidence 788999999999987 599999999999999999999999999752 1245555655 46777889986 8975321
Q ss_pred CCchHHHHHHHHHHHhhhhhhcccccccccccccc--cchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcch
Q 021610 198 QDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILR--PFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESL 275 (310)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~ 275 (310)
.. .+.... ..+.... ..++.|++. .......+... ...+.+..++..+|++|++ ++ .
T Consensus 199 --~~---~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~r~~--~~--~----- 257 (450)
T 3tkt_A 199 --EP---KMLFLT---QQMFGGQ---DEDMNKSGLKDLPPEQISQIVA-GAVAEFERYFAGLAAERRR--NP--T----- 257 (450)
T ss_dssp --HH---HHHHHH---HTTSCCC-------------------HHHHHH-HHHHHHHHHHHHHHHHHHH--SC--C-----
T ss_pred --HH---HHHHHH---HHHhccc---cchhhccccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHh--CC--C-----
Confidence 11 121111 1111111 112222211 10111111111 1223456678888888776 21 2
Q ss_pred hcHHHHHHhhhcCC-CCCHHHHHHHHHHHhhccccC
Q 021610 276 KCAIDHILDAQTKG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 276 ~~ll~~ll~~~~~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.|+++.|++...++ .++++++..++.++++||++|
T Consensus 258 ~dll~~ll~~~~~~~~ls~~ei~~~~~~l~~AG~dT 293 (450)
T 3tkt_A 258 DDVATVIANAVVDGEPMSDRDTAGYYIITASAGHDT 293 (450)
T ss_dssp SSHHHHHHTCEETTEECCHHHHHHHHHHHHHHHSHH
T ss_pred CCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34999999875444 599999999999999999875
No 47
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.82 E-value=4.2e-19 Score=158.72 Aligned_cols=216 Identities=17% Similarity=0.232 Sum_probs=145.4
Q ss_pred cchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCC--cchh-hh-----hcC--CCceeEeccC
Q 021610 53 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR--NVVF-DI-----FTG--KGQDMVFTVY 122 (310)
Q Consensus 53 ~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~--~~~~-~~-----~~~--~~~~~~~~~~ 122 (310)
.++..+.+| ++||||+++++|+.++++++||++++++|.++. +++++. .... .. +.+ .+ +.++..+
T Consensus 16 ~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 91 (408)
T 1odo_A 16 DHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAV-ENMFTAY 91 (408)
T ss_dssp THHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHC-CSGGGCC
T ss_pred ChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--ccccccccccccccccccccccccccc-ccccccC
Confidence 378899999 999999999998899999999999999998653 444432 1100 00 100 11 2367789
Q ss_pred ChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHHHHHHHHHhccccCCCCch
Q 021610 123 GEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNMYRIMFDRRFESQDDP 201 (310)
Q Consensus 123 g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fg~~~~~~~~~ 201 (310)
|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+... ++.++....+. ..+.++|+. +||.+.+. ..
T Consensus 92 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~--~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~ 165 (408)
T 1odo_A 92 GPNHRKLRRLV-APAFSARRVDAMRPAVEAMVTGLVDRLAELPA--GEPVDLRQELAYPLPIAVIGH-LMGVPQDR--RD 165 (408)
T ss_dssp HHHHHHHHHTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHSCT--TSCEEHHHHTTTHHHHHHHHH-HHTCCHHH--HH
T ss_pred ChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCcchHHHHhhhhHHHHHHH-HhCCCHHH--HH
Confidence 99999999987 58999999999999999999999999985321 23455555554 366788885 79985431 11
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHH
Q 021610 202 LFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDH 281 (310)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ 281 (310)
.+.... ..+... . .+ + +. ... ..+.+..++..+|++|++ ++ . .|+++.
T Consensus 166 ---~~~~~~---~~~~~~---~----~~---~--~~----~~~-~~~~~~~~~~~~i~~r~~--~~--~-----~d~l~~ 213 (408)
T 1odo_A 166 ---GFRALV---DGVFDT---T----LD---Q--AE----AQA-NTARLYEVLDQLIAAKRA--TP--G-----DDMTSL 213 (408)
T ss_dssp ---HHHHHH---HHHHCT---T----CC---H--HH----HHH-HHHHHHHHHHHHHHHHHH--SC--C-----SSHHHH
T ss_pred ---HHHHHH---HHHhcc---c----CC---H--HH----HHH-HHHHHHHHHHHHHHHHhh--CC--C-----CCHHHH
Confidence 111111 111110 0 01 1 11 111 123456677788887775 11 1 349999
Q ss_pred HHhhhcC----CCCCHHHHHHHHHHHhhccccC
Q 021610 282 ILDAQTK----GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 282 ll~~~~~----~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
|++..++ ..++++++..++.++++||++|
T Consensus 214 ll~~~~~~~~~~~l~~~ei~~~~~~~~~AG~dT 246 (408)
T 1odo_A 214 LIAARDDEGDGDRLSPEELRDTLLLMISAGYET 246 (408)
T ss_dssp HHHHHCC-----CCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcccccccCCCCHHHHHHHHHHHHHHhHHH
Confidence 9976533 3699999999999999999886
No 48
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.82 E-value=5.2e-19 Score=158.49 Aligned_cols=216 Identities=11% Similarity=0.112 Sum_probs=146.2
Q ss_pred cchHHHHHHHHhhCCeEEEEe-cCeeEEEEcCHHHHHHHHHhcCcccCCCCCc-chhhhhcCC-CceeEeccCChhHHHH
Q 021610 53 LNHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN-VVFDIFTGK-GQDMVFTVYGEHWRKM 129 (310)
Q Consensus 53 ~~~~~~~~~~~~yG~v~~~~~-g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~-~~~~~~~~~-~~~~~~~~~g~~W~~~ 129 (310)
.++..+.+| ++|||++++++ |+.++++++||++++++|.++ .|++++.. ..+..+... +...++..+|+.|+++
T Consensus 38 ~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h~~~ 114 (417)
T 2y5n_A 38 TLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGLLSMDPPEHSRL 114 (417)
T ss_dssp CCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSGGGCCTTHHHHH
T ss_pred CchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccCccCCchHHHHH
Confidence 378899999 89999999997 899999999999999999875 47766432 111111110 1223577899999999
Q ss_pred HhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHHHHHHHHHhccccCCCCchHHHHHHH
Q 021610 130 RRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNMYRIMFDRRFESQDDPLFNRLKA 208 (310)
Q Consensus 130 Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fg~~~~~~~~~~~~~~~~ 208 (310)
||++ .+.|+++.++.+.+.++++++++++.|.+. +..++....+. ..+.++|+. +||.+.+. ... +..
T Consensus 115 R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~----~~~vdl~~~~~~~~~~~vi~~-~~G~~~~~--~~~---~~~ 183 (417)
T 2y5n_A 115 RRLV-VKAFTARRAESLRPRAREIAHELVDQMAAT----GQPADLVAMFARQLPVRVICE-LLGVPSAD--HDR---FTR 183 (417)
T ss_dssp HHHH-HHHSCHHHHHHTHHHHHHHHHHHHHHHHHH----CSSEEHHHHTTTTHHHHHHHH-HHTCCGGG--HHH---HHH
T ss_pred HHHH-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhC----CCCeeHHHHHHHHhHHHHHHH-HcCCCHHH--HHH---HHH
Confidence 9987 488999999999999999999999999731 11455555553 466788887 69986532 111 111
Q ss_pred HHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcC
Q 021610 209 LNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTK 288 (310)
Q Consensus 209 ~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~ 288 (310)
. ...+...+ . .| . +. .. ...+.+..++..+|++|++ .+ . .|+++.|++..++
T Consensus 184 ~---~~~~~~~~-----~-~~----~-~~----~~-~~~~~l~~~~~~~i~~r~~--~~--~-----~dll~~ll~~~~~ 235 (417)
T 2y5n_A 184 W---SGAFLSTA-----E-VT----A-EE----MQ-EAAEQAYAYMGDLIDRRRK--EP--T-----DDLVSALVQARDQ 235 (417)
T ss_dssp H---HHTTSTTC-----C-CC----H-HH----HH-HHHHHHHHHHHHHHHHHHH--SC--C-----SSHHHHHHHCCBT
T ss_pred H---HHHHhccc-----C-CC----H-HH----HH-HHHHHHHHHHHHHHHHHHh--CC--C-----CCHHHHHHhhhcc
Confidence 1 11111100 0 11 1 11 11 1123456677788888776 11 1 3599999986544
Q ss_pred C-CCCHHHHHHHHHHHhhccccC
Q 021610 289 G-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 289 ~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+ .++++++..++.++++||++|
T Consensus 236 ~~~ls~~ei~~~~~~l~~AG~eT 258 (417)
T 2y5n_A 236 QDSLSEQELLDLAIGLLVAGYES 258 (417)
T ss_dssp TBCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhHHH
Confidence 4 699999999999999999874
No 49
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.82 E-value=2.6e-19 Score=160.64 Aligned_cols=222 Identities=12% Similarity=0.190 Sum_probs=147.3
Q ss_pred cchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCC-----cc-h--hhhhcCCCceeEeccCCh
Q 021610 53 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR-----NV-V--FDIFTGKGQDMVFTVYGE 124 (310)
Q Consensus 53 ~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~-----~~-~--~~~~~~~~~~~~~~~~g~ 124 (310)
.++..+.+| ++||||++ + |+.++++++||++++++|.++. |++|+. .. . ...+.+.....++..+|+
T Consensus 27 ~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 101 (419)
T 1q5d_A 27 DPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGLFGLPPE 101 (419)
T ss_dssp CCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHSTTTSCHH
T ss_pred ChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhcccccccCCch
Confidence 378889999 78999999 6 7789999999999999998774 988862 11 1 112210001225668899
Q ss_pred hHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccccCCCCchHH
Q 021610 125 HWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFESQDDPLF 203 (310)
Q Consensus 125 ~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~~~~~~~~~~ 203 (310)
.|+++||++ .+.|+++.++.+.+.++++++++++.|.+. +.++....+ ...+.++|+.+ ||.+.+. .+.+
T Consensus 102 ~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-----~~~d~~~~~~~~~~~~vi~~~-fG~~~~~--~~~~ 172 (419)
T 1q5d_A 102 DHARVRKLV-NPSFTSRAIDLLRAEIQRTVDQLLDARSGQ-----EEFDVVRDYAEGIPMRAISAL-LKVPAEC--DEKF 172 (419)
T ss_dssp HHHHHHHHH-GGGGSHHHHGGGHHHHHHHHHHHHHHHTTS-----SCEETTTTTGGGSHHHHHHHH-TTCCGGG--HHHH
T ss_pred HHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHHH-hCCCHHH--HHHH
Confidence 999999987 589999999999999999999999999752 134433333 45677889998 9986542 1211
Q ss_pred HHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHH
Q 021610 204 NRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHIL 283 (310)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll 283 (310)
...... +..... ...+|+..+.++. ... ..+.+..++..+|++|++ ++ .+ .|+++.|+
T Consensus 173 ---~~~~~~---~~~~~~---~~~~P~~~~~~~~----~~~-~~~~~~~~~~~~i~~r~~--~~--~~----~dll~~ll 230 (419)
T 1q5d_A 173 ---RRFGSA---TARALG---VGLVPRVDEETKT----LVA-SVTEGLALLHGVLDERRR--NP--LE----NDVLTMLL 230 (419)
T ss_dssp ---HHHHHH---HHHHTT---TTTSSCCCSCHHH----HHH-HHHHHHHHHHHHHHHHHH--SC--CS----SCHHHHHH
T ss_pred ---HHHHHH---HHHhcc---cccccCChHHHHH----HHH-HHHHHHHHHHHHHHHHHh--CC--CC----CCHHHHHH
Confidence 111111 111111 1234433211111 111 123456677788888775 11 12 05999999
Q ss_pred hhhcCC-CCCHHHHHHHHHHHhhccccC
Q 021610 284 DAQTKG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 284 ~~~~~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+..+++ .++++++..++.++++||++|
T Consensus 231 ~~~~~~~~l~~~ei~~~~~~l~~AG~dT 258 (419)
T 1q5d_A 231 QAEADGSRLSTKELVALVGAIIAAGTDT 258 (419)
T ss_dssp HHHHSSTTCCHHHHHHHHHHHHHHHSHH
T ss_pred hhhccCCCCCHHHHHHHHHHHHHHhhHH
Confidence 765433 699999999999999999874
No 50
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.81 E-value=9.7e-19 Score=156.14 Aligned_cols=211 Identities=16% Similarity=0.190 Sum_probs=147.1
Q ss_pred chHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCc--c----------hh-hh---hcCCCcee
Q 021610 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRN--V----------VF-DI---FTGKGQDM 117 (310)
Q Consensus 54 ~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~--~----------~~-~~---~~~~~~~~ 117 (310)
++..+.+| ++|||++++++|+.+++++++|++++++|.++ .|++|+.. . .. .. ..+.+
T Consensus 16 p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 89 (404)
T 1z8o_A 16 WYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFATN--- 89 (404)
T ss_dssp HHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSSS---
T ss_pred cHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhcccc---
Confidence 78899999 99999999999999999999999999999876 58887642 1 11 11 12222
Q ss_pred EeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccccC
Q 021610 118 VFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFE 196 (310)
Q Consensus 118 ~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~~~ 196 (310)
++..+|+.|+++||++ .+.|+++.++.+.+.+.++++++++.|.+ ++.++....+ ...+.++|+.+ ||.+.+
T Consensus 90 l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~-----~~~~d~~~~~~~~~~~~vi~~~-~G~~~~ 162 (404)
T 1z8o_A 90 MGTSDPPTHTRLRKLV-SQEFTVRRVEAMRPRVEQITAELLDEVGD-----SGVVDIVDRFAHPLPIKVICEL-LGVDEK 162 (404)
T ss_dssp GGGCCTTHHHHHHHHH-HTTSCHHHHHHTHHHHHHHHHHHHHTSCS-----SSEEEHHHHTTTHHHHHHHHHH-TTCCGG
T ss_pred cccCCCcHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhhhh-----cCCcchHHHHhHHHHHHHHHHH-hCCCHH
Confidence 5678999999999987 58999999999999999999999999864 1235555444 35667888874 998654
Q ss_pred CCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchh
Q 021610 197 SQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLK 276 (310)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~ 276 (310)
.. +. +.. ... .+.. . . .|. .+. .. ...+.+..++..+|++|++ ++ . .
T Consensus 163 ~~-~~-~~~---~~~---~~~~-~-----~-~p~----~~~----~~-~~~~~~~~~~~~~i~~r~~--~~--~-----~ 209 (404)
T 1z8o_A 163 YR-GE-FGR---WSS---EILV-M-----D-PER----AEQ----RG-QAAREVVNFILDLVERRRT--EP--G-----D 209 (404)
T ss_dssp GT-TT-HHH---HHH---HHHC-C-----C-GGG----HHH----HH-HHHHHHHHHHHHHHHHHHH--SC--C-----S
T ss_pred HH-HH-HHH---HHH---HHhc-c-----C-Chh----HHH----HH-HHHHHHHHHHHHHHHHHHh--CC--C-----C
Confidence 31 12 111 111 1111 1 0 121 111 11 1123456677788888775 11 1 3
Q ss_pred cHHHHHHhh-hcCC-CCCHHHHHHHHHHHhhccccC
Q 021610 277 CAIDHILDA-QTKG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 277 ~ll~~ll~~-~~~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
|+++.|++. .+++ .++++++..++.++++||++|
T Consensus 210 dll~~ll~~~~~~~~~l~~~ei~~~~~~~~~AG~~T 245 (404)
T 1z8o_A 210 DLLSALIRVQDDDDGRLSADELTSIALVLLLAGFEA 245 (404)
T ss_dssp SHHHHHHHCEETTTEECCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhcccCCCCCHHHHHHHHHHHHhcchHH
Confidence 499999976 4433 599999999999999999874
No 51
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.81 E-value=9.8e-20 Score=162.30 Aligned_cols=213 Identities=10% Similarity=0.037 Sum_probs=146.4
Q ss_pred cchHHHHHHHHhh--CCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcCCCceeEeccCChhHHHHH
Q 021610 53 LNHRNLSDLAKKY--GDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMR 130 (310)
Q Consensus 53 ~~~~~~~~~~~~y--G~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~R 130 (310)
.++..+.+|.++| |||++++.|+ ++++++||+.++++| ++.+.|++|+....... ...+..+++..+|+.|+++|
T Consensus 20 ~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~R 96 (398)
T 4fb2_A 20 TPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTFPRYE-TGEFELMMAGQDDPVHKKYR 96 (398)
T ss_dssp SSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSSSCC-----CCCTTTTCCTTHHHHHH
T ss_pred ChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccccCCC-CcccccCcccCCchHHHHHH
Confidence 3889999999999 9999999986 699999999999999 55668888764332111 12222346778999999999
Q ss_pred hhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHH
Q 021610 131 RIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFESQDDPLFNRLKAL 209 (310)
Q Consensus 131 k~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~ 209 (310)
|++ .+.|+++.++.+.+.+.++++++++.|.+.. .++....+ ...+.++++. +||.+.+. .. .+...
T Consensus 97 ~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~-----~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~---~~~~~ 164 (398)
T 4fb2_A 97 QLV-AKPFSPEATDLFTEQLRQSTNDLIDARIELG-----EGDAATWLANEIPARLTAI-LLGLPPED--GD---TYRRW 164 (398)
T ss_dssp HHH-HTTTCHHHHHTTHHHHHHHHHHHHHTTTTTT-----EEEHCCCCCTTHHHHHHHH-HTTSCGGG--HH---HHHHH
T ss_pred HHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhhcC-----CccHHHHHHHHHHHHHHHH-HcCCCHHH--HH---HHHHH
Confidence 987 5899999999999999999999999987532 23332223 3456678888 68975432 11 11111
Q ss_pred HHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcCC
Q 021610 210 NGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKG 289 (310)
Q Consensus 210 ~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~ 289 (310)
. ..+.. |. .+ .... ...+.+..++..+|++|++ ++ ..|+++.|++...++
T Consensus 165 ~---~~~~~----------~~-~~--~~~~-----~~~~~~~~~~~~~i~~r~~--~~-------~~d~l~~ll~~~~~~ 214 (398)
T 4fb2_A 165 V---WAITH----------VE-NP--EEGA-----EIFAELVAHARTLIAERRT--NP-------GNDIMSRVIMSKIDG 214 (398)
T ss_dssp H---HHHHH----------CC-CH--HHHH-----HHHHHHHHHHHHHHHHHHH--SC-------CSSHHHHHHHCCBTT
T ss_pred H---HHHhc----------CC-CH--HHHH-----HHHHHHHHHHHHHHHHHHh--CC-------CCCHHHHHHHcccCC
Confidence 1 11111 10 01 1111 1123456677788888776 11 234999999875444
Q ss_pred -CCCHHHHHHHHHHHhhccccC
Q 021610 290 -EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 290 -~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.++++++...+.++++||++|
T Consensus 215 ~~l~~~~i~~~~~~l~~AG~~T 236 (398)
T 4fb2_A 215 ESLSEDDLIGFFTILLLGGIDN 236 (398)
T ss_dssp BCCCHHHHHHHHHHCCCCCCHH
T ss_pred CCCCHHHHHHHHHHHHHHhhHH
Confidence 599999999999999999874
No 52
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.81 E-value=8.4e-19 Score=156.97 Aligned_cols=215 Identities=13% Similarity=0.146 Sum_probs=145.9
Q ss_pred cchHHHHHHHHhhCCeEEEEe-cCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchh------hhhcC---CCceeEeccC
Q 021610 53 LNHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVF------DIFTG---KGQDMVFTVY 122 (310)
Q Consensus 53 ~~~~~~~~~~~~yG~v~~~~~-g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~------~~~~~---~~~~~~~~~~ 122 (310)
.|+..+.+|. +|||++++++ |+.++++++||++++++|.++ .|++|+..... ..+.. .+.+.++..+
T Consensus 23 ~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (413)
T 2z36_A 23 APPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTLDAATLQQLRSQPPLMLGMD 99 (413)
T ss_dssp BCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSCCHHHHHHHTTSCCCGGGCC
T ss_pred CchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCccccccccccccccccccccccccC
Confidence 3788999997 7999999998 899999999999999999874 58877532111 11210 1333256688
Q ss_pred ChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHHHHHHHHHhccccCCCCch
Q 021610 123 GEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNMYRIMFDRRFESQDDP 201 (310)
Q Consensus 123 g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fg~~~~~~~~~ 201 (310)
|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+.. ++.++....+. ..+.++|+.+ ||.+.+. ..
T Consensus 100 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~---~~~~d~~~~~~~~~~~~vi~~~-~G~~~~~--~~ 172 (413)
T 2z36_A 100 GAEHSAARRPV-IGEFTVKRLAALRPRIQDIVDHFIDDMLATD---QRPVDLVQALSLPVPSLVICEL-LGVPYTD--HD 172 (413)
T ss_dssp HHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTTCS---CSSEEHHHHTTTHHHHHHHHHH-HTCCGGG--HH
T ss_pred chHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCccHHHHHhhhhHHHHHHHH-hCCCHHH--HH
Confidence 99999999987 4889999999999999999999999997421 12455554444 4566788884 9986532 11
Q ss_pred HHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHH
Q 021610 202 LFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDH 281 (310)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ 281 (310)
. +.... ..+.. .. .+ +.. . ...+.+..++..+|++|++ ++ ..|+++.
T Consensus 173 ~---~~~~~---~~~~~--------~~---~~--~~~----~-~~~~~~~~~~~~~i~~r~~--~~-------~~dll~~ 219 (413)
T 2z36_A 173 F---FQSRT---TMMVS--------RT---SM--EDR----R-RAFAELRAYIDDLITRKES--EP-------GDDLFSR 219 (413)
T ss_dssp H---HHHHH---HHTTC--------SS---CH--HHH----H-HHHHHHHHHHHHHHHHHHS--SC-------CSSHHHH
T ss_pred H---HHHHH---HHHhc--------cc---Cc--HHH----H-HHHHHHHHHHHHHHHHHHh--CC-------CCCHHHH
Confidence 1 11111 01100 00 01 111 1 1123455677788887775 11 1359999
Q ss_pred HHhhhcC-CCCCHHHHHHHHHHHhhccccC
Q 021610 282 ILDAQTK-GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 282 ll~~~~~-~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
|++..++ ..+|++++..++.++++||++|
T Consensus 220 ll~~~~~~~~ls~~ei~~~~~~l~~AG~eT 249 (413)
T 2z36_A 220 QIARQRQEGTLDHAGLVSLAFLLLTAGHET 249 (413)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHSHH
T ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhcchHH
Confidence 9976432 3699999999999999999874
No 53
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.81 E-value=1.4e-18 Score=156.11 Aligned_cols=217 Identities=13% Similarity=0.124 Sum_probs=143.4
Q ss_pred chHHHHHHHHhhCCeEEEEec--CeeEEEEcCHHHHHHHHHhcCcccCCCCCc--------c-h-------hhhhcCCCc
Q 021610 54 NHRNLSDLAKKYGDVLLLRMG--QRNLVVVSSPDHAKEVLHTQGVEFGSRTRN--------V-V-------FDIFTGKGQ 115 (310)
Q Consensus 54 ~~~~~~~~~~~yG~v~~~~~g--~~~~vvi~~pe~i~evl~~~~~~f~~R~~~--------~-~-------~~~~~~~~~ 115 (310)
++..+.++. +||||+++++| +.++++++||+.++++|.++ .|++|+.. . . ...+.+.+
T Consensus 22 p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 97 (425)
T 2z3t_A 22 PYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVENW- 97 (425)
T ss_dssp CHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHTTC-
T ss_pred hHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccccccccccc-
Confidence 788888886 49999999998 78899999999999999875 68887631 0 1 11122222
Q ss_pred eeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccc
Q 021610 116 DMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRR 194 (310)
Q Consensus 116 ~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~ 194 (310)
++..+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+. +.++....+ ...+.++|+.+ ||.+
T Consensus 98 --l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-----g~~dl~~~~~~~~~~~vi~~~-~G~~ 168 (425)
T 2z3t_A 98 --LVFLDPPHHTELRSLL-TTEFSPSIVTGLRPRIAELASALLDRLRAQ-----RRPDLVEGFAAPLPILVISAL-LGIP 168 (425)
T ss_dssp --GGGCCHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTTS-----SSCBHHHHTTTHHHHHHHHHH-HTCC
T ss_pred --cccCCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHH-hCCC
Confidence 5667899999999987 589999999999999999999999999752 135554444 45677889988 9986
Q ss_pred cCCCCchHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcc
Q 021610 195 FESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNES 274 (310)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~ 274 (310)
.+. ... +...... +... .+++|. +. ..+ +... ...+.+..++..+|++|++ ++
T Consensus 169 ~~~--~~~---~~~~~~~---~~~~-----~~~~~~--~~-~~~-~~~~-~~~~~~~~~~~~~i~~r~~--~~------- 221 (425)
T 2z3t_A 169 EED--HTW---LRANAVA---LQEA-----STTRAR--DG-RGY-ARAE-AASQEFTRYFRREVDRRGG--DD------- 221 (425)
T ss_dssp GGG--HHH---HHHHHHH---HHTT-----CTTCCC------HH-HHHH-HHHHHHHHHHHHHHCC--------------
T ss_pred HHH--HHH---HHHHHHH---HHhh-----ccccCC--CH-HHH-HHHH-HHHHHHHHHHHHHHHHHHh--CC-------
Confidence 542 111 1111111 1111 122231 11 111 1111 1123455666667766654 11
Q ss_pred hhcHHHHHHhhhcCC-CCCHHHHHHHHHHHhhccccC
Q 021610 275 LKCAIDHILDAQTKG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 275 ~~~ll~~ll~~~~~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
..|+++.|++..+++ .++++++..++.++++||++|
T Consensus 222 ~~dll~~ll~~~~~~~~ls~~el~~~~~~l~~AG~dT 258 (425)
T 2z3t_A 222 RDDLLTLLVRARDTGSPLSVDGIVGTCVHLLTAGHET 258 (425)
T ss_dssp --CHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHhhhHH
Confidence 245999999765333 699999999999999999986
No 54
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.80 E-value=2.5e-18 Score=153.80 Aligned_cols=214 Identities=14% Similarity=0.179 Sum_probs=144.0
Q ss_pred chHHHHHHHHhhCCeEEEEe-cCeeEEEEcCHHHHHHHHHhcCcccCCCCC-cchhh--hhcCC-------C-ceeEecc
Q 021610 54 NHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTR-NVVFD--IFTGK-------G-QDMVFTV 121 (310)
Q Consensus 54 ~~~~~~~~~~~yG~v~~~~~-g~~~~vvi~~pe~i~evl~~~~~~f~~R~~-~~~~~--~~~~~-------~-~~~~~~~ 121 (310)
++..+.+| ++|||++++++ |+.++++++||++++++|.++. +++++. ..... ..... . .+.++..
T Consensus 19 p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (411)
T 1gwi_A 19 LDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGRSMLTV 95 (411)
T ss_dssp HHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCSSGGGC
T ss_pred hHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhccccccccC
Confidence 78889999 99999999998 8999999999999999998764 444431 11100 00000 1 1236778
Q ss_pred CChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHHHHHHHHHhccccCCCCc
Q 021610 122 YGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNMYRIMFDRRFESQDD 200 (310)
Q Consensus 122 ~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fg~~~~~~~~ 200 (310)
+|+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+ . ++.++....+. ..+.++|+. +||.+.+. .
T Consensus 96 ~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~-~---~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~ 167 (411)
T 1gwi_A 96 DGAEHRRLRTLV-AQALTVRRVEHMRGRITELTDRLLDELPA-D---GGVVDLKAAFAYPLPMYVVAD-LMGIEEAR--L 167 (411)
T ss_dssp CHHHHHHHHHHH-TTTSCHHHHHTTHHHHHHHHHHHHHTSCC-S---CCCEEHHHHTTTHHHHHHHHH-HHTCCGGG--H
T ss_pred CcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHH-c---CCCcchHHHHhhHHHHHHHHH-HhCCCHHH--H
Confidence 999999999987 58999999999999999999999999963 1 23455555554 366688885 69986532 1
Q ss_pred hHHHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHH
Q 021610 201 PLFNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAID 280 (310)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~ 280 (310)
.. +..... .+... . .+ + +. ... ..+.+..++..+|++|++ ++ . .|+++
T Consensus 168 ~~---~~~~~~---~~~~~---~----~~---~--~~----~~~-~~~~~~~~~~~~i~~r~~--~~--~-----~d~l~ 215 (411)
T 1gwi_A 168 PR---LKVLFE---KFFST---Q----TP---P--EE----VVA-TLTELASIMTDTVAAKRA--AP--G-----DDLTS 215 (411)
T ss_dssp HH---HHHHHH---HHHCT---T----SC---H--HH----HHH-HHHHHHHHHHHHHHHHHH--SC--C-----SSHHH
T ss_pred HH---HHHHHH---HHhcc---C----CC---h--HH----HHH-HHHHHHHHHHHHHHHHHh--CC--C-----CCHHH
Confidence 11 111111 11110 0 01 1 11 111 123456677788887775 11 1 34999
Q ss_pred HHHhhhcCC-CCCHHHHHHHHHHHhhccccC
Q 021610 281 HILDAQTKG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 281 ~ll~~~~~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.|++..+++ .++++++..++.++++||++|
T Consensus 216 ~ll~~~~~~~~l~~~~i~~~~~~~~~AG~dT 246 (411)
T 1gwi_A 216 ALIQASENGDHLTDAEIVSTLQLMVAAGHET 246 (411)
T ss_dssp HHHHCCBTTBCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHHHhhH
Confidence 999765433 699999999999999999874
No 55
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.80 E-value=3.8e-20 Score=169.51 Aligned_cols=163 Identities=10% Similarity=0.124 Sum_probs=120.1
Q ss_pred CCCCCCCCCCCCcccccccccC----CCcchHHHHHHHHhhCC-eEEEEecCeeE-------EEEcCHHHHHHHHHhc--
Q 021610 29 KRFKLPPGPLPVPVFGNWLQVG----DDLNHRNLSDLAKKYGD-VLLLRMGQRNL-------VVVSSPDHAKEVLHTQ-- 94 (310)
Q Consensus 29 ~~~~~ppgP~~~pilGn~~~l~----~~~~~~~~~~~~~~yG~-v~~~~~g~~~~-------vvi~~pe~i~evl~~~-- 94 (310)
.+.+.||||.|||++||++++. ...++.++.++.++||+ ||++++|+.++ |++++++..+.++...
T Consensus 25 ~p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~v 104 (495)
T 3dsk_A 25 LPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKV 104 (495)
T ss_dssp CCBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTTE
T ss_pred CCCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeecccccc
Confidence 3456899999999999998764 33478899999999999 99999998888 6677777666555332
Q ss_pred --Cccc-CCCCCcchhhhhcC-CCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccC
Q 021610 95 --GVEF-GSRTRNVVFDIFTG-KGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATN 170 (310)
Q Consensus 95 --~~~f-~~R~~~~~~~~~~~-~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 170 (310)
.+.+ +..+.. .. +.| .+...++..+|+.|+++|+++. +.|++.. +.+.+.+++++.++++.|.+.... ++
T Consensus 105 ~k~~~~~~~~~~~--~~-l~g~~~~~~~~~~~g~~h~~~R~~~~-~~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~-~~ 178 (495)
T 3dsk_A 105 EKKDLLTGTYMPS--TE-LTGGYRILSYLDPSEPKHEKLKNLLF-FLLKSSR-NRIFPEFQATYSELFDSLEKELSL-KG 178 (495)
T ss_dssp ECSSCTTSSSCCC--GG-GGTTCCCGGGCCTTSHHHHHHHHHHH-HHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHH-HS
T ss_pred cccccccccCCCC--cc-ccCCCcceeeeCCCchHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc-CC
Confidence 1223 223322 23 333 2333456678999999999875 7788754 889999999999999999753211 23
Q ss_pred ChhHHHHHHHHHHHHHHHHHhccccCC
Q 021610 171 GIVLRRRLQLMMYNNMYRIMFDRRFES 197 (310)
Q Consensus 171 ~~~~~~~~~~~~~~~i~~~~fg~~~~~ 197 (310)
.++....+...+.+++++++||.+.+.
T Consensus 179 ~vdl~~~~~~~~~~~i~~~~~G~~~~~ 205 (495)
T 3dsk_A 179 KADFGGSSDGTAFNFLARAFYGTNPAD 205 (495)
T ss_dssp SEESHHHHHHHHHHHHHHHHHSCCGGG
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCcch
Confidence 466677788888899999999987654
No 56
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.80 E-value=4.3e-19 Score=159.15 Aligned_cols=221 Identities=14% Similarity=0.181 Sum_probs=144.5
Q ss_pred cchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcC-------CCceeEeccCChh
Q 021610 53 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTG-------KGQDMVFTVYGEH 125 (310)
Q Consensus 53 ~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~-------~~~~~~~~~~g~~ 125 (310)
.|+..+.+| ++||||+++++| .++|++|+.|++||.+. ..+++|+.........+ .....++..+|+.
T Consensus 30 ~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~ 104 (418)
T 3r9b_A 30 DPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP-SSCSDRTKSTIFQRQLAAETQPRPQGPASFLFLDPPD 104 (418)
T ss_dssp CCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT-TEECCGGGCHHHHHHHC---------CCCGGGCCTTH
T ss_pred CchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc-ccccCcccccccccccccccccccccccchhhcCCch
Confidence 388888888 679999998876 89999999999999664 34566764333332221 1123367788999
Q ss_pred HHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccccCCCCchHHH
Q 021610 126 WRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFESQDDPLFN 204 (310)
Q Consensus 126 W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~~~~~~~~~~~ 204 (310)
|+++||++ .+.|+++.++.+.+.++++++++++ +.+. +.++....+ ...+.++|+. +||.+.+. ...+
T Consensus 105 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~-l~~~-----~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~~~- 173 (418)
T 3r9b_A 105 HTRLRGLV-SKAFAPRVIKRLEPEITALVDQLLD-AVDG-----PEFNLIDNLAYPLPVAVICR-LLGVPIED--EPKF- 173 (418)
T ss_dssp HHHHHHHH-HGGGSHHHHGGGHHHHHHHHHHHHH-TCCS-----SEEEHHHHTTTHHHHHHHHH-HHTCCGGG--HHHH-
T ss_pred HHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHh-hhcc-----CCeehHHHHhCcCCHHHHHH-HcCCCHHH--HHHH-
Confidence 99999987 4999999999999999999999999 7532 235554444 3567788998 89986542 2221
Q ss_pred HHHHHHHHhhhhhhcccccccccccccc-cchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHH
Q 021610 205 RLKALNGERSRLAQSFEYNYGDFIPILR-PFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHIL 283 (310)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~~P~l~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll 283 (310)
...... +...+. ....++.+. +..+. .. ...+.+..++..++++|++ ++ ..|+++.|+
T Consensus 174 --~~~~~~---~~~~~~--~~~~~~~~~~~~~~~----~~-~~~~~l~~~~~~~i~~r~~--~~-------~~d~l~~ll 232 (418)
T 3r9b_A 174 --SRASAL---LAAALD--PFLALTGETSDLFDE----QM-KAGMWLRDYLRALIDERRR--TP-------GEDLMSGLV 232 (418)
T ss_dssp --HHHHHH---HHHTTS--CHHHHHSSCCTTHHH----HH-HHHHHHHHHHHHHHHHTTT--SC-------CSSHHHHHH
T ss_pred --HHHHHH---HHhhcC--ccccccccCHHHHHH----HH-HHHHHHHHHHHHHHHHHHh--CC-------CccHHHHHH
Confidence 111111 111111 000011110 11111 11 1223456677778877665 11 235999999
Q ss_pred hhhcC-CCCCHHHHHHHHHHHhhccccC
Q 021610 284 DAQTK-GEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 284 ~~~~~-~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+..++ ..++++++..++.++++||++|
T Consensus 233 ~~~~~~~~ls~~ei~~~~~~l~~AG~eT 260 (418)
T 3r9b_A 233 AVEESGDQLTEDEIIATCNLLLIAGHET 260 (418)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred HhhhccCCCCHHHHHHHHHHHHHHhHHH
Confidence 76533 3699999999999999999876
No 57
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.80 E-value=3.6e-18 Score=152.16 Aligned_cols=214 Identities=11% Similarity=0.064 Sum_probs=145.5
Q ss_pred cchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcCCCceeEeccCChhHHHHHhh
Q 021610 53 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRI 132 (310)
Q Consensus 53 ~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~ 132 (310)
.++..+.++.+ |||||++ +. ++++++||++++++|.++. .|++++... .....+ +.++..+|+.|+++||+
T Consensus 19 ~p~~~~~~l~~-~Gpv~~~--~~-~~vvv~~~~~v~~vl~~~~-~f~~~~~~~-~~~~~~---~~l~~~~g~~h~~~R~~ 89 (398)
T 2xkr_A 19 EARAAYRWMRA-NQPVFRD--RN-GLAAASTYQAVIDAERQPE-LFSNAGGIR-PDQPAL---PMMIDMDDPAHLLRRKL 89 (398)
T ss_dssp THHHHHHHHHH-HCSEEEC--TT-CCEEECSHHHHHHHHTCTT-TEESTTCSS-TTSCCC---SSGGGCCTTHHHHHHHH
T ss_pred ChhHHHHHHHh-cCCeeec--CC-CeEEEecHHHHHHHHhCcc-cccCccccC-Cccccc---ccccccCchHHHHHHHH
Confidence 37888999977 9999954 44 8999999999999997654 788886432 222222 23667889999999998
Q ss_pred hcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 021610 133 MTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFESQDDPLFNRLKALNG 211 (310)
Q Consensus 133 l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~ 211 (310)
+ .+.|+++.++.+.+.+.++++++++.|.+. +.++....+ ...+.++|+++ ||.+.+. .+. +.....
T Consensus 90 ~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----~~~d~~~~~~~~~~~~vi~~~-fG~~~~~--~~~---~~~~~~ 157 (398)
T 2xkr_A 90 V-NAGFTRKRVKDKEASIAALCDTLIDAVCER-----GECDFVRDLAAPLPMAVIGDM-LGVRPEQ--RDM---FLRWSD 157 (398)
T ss_dssp H-GGGSCHHHHHTTHHHHHHHHHHHHHTTTTT-----SEEEHHHHTTTHHHHHHHHHH-HTCCGGG--HHH---HHHHHH
T ss_pred h-hhhhCHHHHHHHHHHHHHHHHHHHHhhhhc-----CCccHHHHHHHHHHHHHHHHH-hCCCHHH--HHH---HHHHHH
Confidence 7 589999999999999999999999998642 235555344 35777899998 9987542 111 111111
Q ss_pred HhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcCC-C
Q 021610 212 ERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKG-E 290 (310)
Q Consensus 212 ~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~-~ 290 (310)
. +..... ..++| ...+ ... ...+.+..++..+|++|++ ++ ..|+++.|++...++ .
T Consensus 158 ~---~~~~~~---~~~~p---~~~~----~~~-~~~~~~~~~~~~~i~~r~~--~~-------~~dll~~ll~~~~~~~~ 214 (398)
T 2xkr_A 158 D---LVTFLS---SHVSQ---EDFQ----ITM-DAFAAYNDFTRATIAARRA--DP-------TDDLVSVLVSSEVDGER 214 (398)
T ss_dssp H---HHHHHT---SCCCH---HHHH----HHH-HHHHHHHHHHHHHHHHHHH--SC-------CSSHHHHHHHCCBTTBC
T ss_pred H---HHhccC---cccch---hhHH----HHH-HHHHHHHHHHHHHHHHHHh--CC-------CCCHHHHHHHhhccCCC
Confidence 1 111100 01222 1111 111 1123456677788888775 11 134999999765443 5
Q ss_pred CCHHHHHHHHHHHhhccccC
Q 021610 291 INEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 291 ~~~e~i~~~~~~l~~aG~~~ 310 (310)
++++++..++.++++||++|
T Consensus 215 ls~~ei~~~~~~l~~AG~eT 234 (398)
T 2xkr_A 215 LSDDELVMETLLILIGGDET 234 (398)
T ss_dssp CCHHHHHHHHHHHHHHHSHH
T ss_pred CCHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999874
No 58
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.79 E-value=1.5e-18 Score=155.75 Aligned_cols=219 Identities=11% Similarity=0.063 Sum_probs=144.1
Q ss_pred cchHHHHHHHHhhC-CeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcCCCceeEeccCChhHHHHHh
Q 021610 53 LNHRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRR 131 (310)
Q Consensus 53 ~~~~~~~~~~~~yG-~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk 131 (310)
+|+..+.++.+++| ||+++..|+ +.++|+||+.+++|| ++...|++++... .....+.+...++..+|+.|+++||
T Consensus 39 dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~-~~~~~~~~~~~~~~~dg~~h~~~R~ 115 (421)
T 3lxh_A 39 GFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIY-RSPERFSSRVIWV-PREAGEAYDMVPTKLDPPEHTPYRK 115 (421)
T ss_dssp CHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHH-TCTTTEETTCCSS-SHHHHHHCCCTTTTCCTTTHHHHHH
T ss_pred ChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHH-cChhhccCCcccC-CcccccccccCCccCCcHHHHHHHH
Confidence 37888888877655 899999876 589999999999999 4556798887322 1111111223367789999999999
Q ss_pred hhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHH-HHHHHHHHHHhccccCCCCchHHHHHHHHH
Q 021610 132 IMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQL-MMYNNMYRIMFDRRFESQDDPLFNRLKALN 210 (310)
Q Consensus 132 ~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~ 210 (310)
++ .+.|+++.++.+.+.+.++++++++.|.+. +.++....+.. .+.++++. +||.+.+. ...+....
T Consensus 116 ~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----~~~d~~~~~~~~~~~~v~~~-~~G~~~~~-----~~~~~~~~ 183 (421)
T 3lxh_A 116 AI-DKGLNLAEIRKLEDQIRTIAVEIIEGFADR-----GHCEFGSEFSTVFPVRVFLA-LAGLPVED-----ATKLGLLA 183 (421)
T ss_dssp HH-HHHHSHHHHHTTHHHHHHHHHHHHHTTTTT-----SEEEHHHHTTTTHHHHHHHH-HHTCCGGG-----HHHHHHHH
T ss_pred HH-hhhcCHHHHHHHHHHHHHHHHHHHHHHhhc-----CCeehHHHHHHHHHHHHHHH-HcCCCHHH-----HHHHHHHH
Confidence 87 589999999999999999999999998642 23444444433 34455554 58975432 11111111
Q ss_pred HHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcCC-
Q 021610 211 GERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKG- 289 (310)
Q Consensus 211 ~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~- 289 (310)
..+... ..++|.. ..+. . ....+.+..++..++++|++. ...|+++.|++...++
T Consensus 184 ---~~~~~~-----~~~~p~~--~~~~----~-~~~~~~~~~~~~~~i~~r~~~---------~~~dll~~ll~~~~~~~ 239 (421)
T 3lxh_A 184 ---NEMTRP-----SGNTPEE--QGRS----L-EAANKGFFEYVAPIIAARRGG---------SGTDLITRILNVEIDGK 239 (421)
T ss_dssp ---HHHHSC-----CCSSHHH--HHHH----H-HHHHHHHHHHHHHHHHHHTTC---------CCCSHHHHHHTSCBTTB
T ss_pred ---HHHhcc-----ccCCCch--hHHH----H-HHHHHHHHHHHHHHHHHHHhC---------CCCCHHHHHHhhhccCC
Confidence 111111 1122321 0111 1 112234567778888887762 1234999999875444
Q ss_pred CCCHHHHHHHHHHHhhccccC
Q 021610 290 EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 290 ~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.++++++..++.++++||++|
T Consensus 240 ~l~~~ei~~~~~~l~~AG~eT 260 (421)
T 3lxh_A 240 PMPDDRALGLVSLLLLGGLDT 260 (421)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhHHH
Confidence 699999999999999999874
No 59
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.78 E-value=2.4e-18 Score=154.05 Aligned_cols=215 Identities=12% Similarity=0.073 Sum_probs=144.6
Q ss_pred cchHHHHHHHHhhCCeE-----EEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcc-hhh--hh-cCCCceeEeccCC
Q 021610 53 LNHRNLSDLAKKYGDVL-----LLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-VFD--IF-TGKGQDMVFTVYG 123 (310)
Q Consensus 53 ~~~~~~~~~~~~yG~v~-----~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~-~~~--~~-~~~~~~~~~~~~g 123 (310)
.|+..+.+|. +||||+ ++++ .++++++||++++++|.++ ..|++|+... ... .+ ...+...++..+|
T Consensus 26 ~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 101 (414)
T 2uuq_A 26 NPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMVMQDP 101 (414)
T ss_dssp CCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGGGCCT
T ss_pred CchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccccccCCc
Confidence 3788888884 699999 7776 6899999999999999876 5788886432 121 22 1011123566789
Q ss_pred hhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccccCCCCchH
Q 021610 124 EHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFESQDDPL 202 (310)
Q Consensus 124 ~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~~~~~~~~~ 202 (310)
+.|+++||++ .+.|+++.++.+.+.++++++++++.|.+. +.++....+ ..++.++|+. +||.+.+. .+.
T Consensus 102 ~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-----~~vdl~~~~~~~~~~~vi~~-~~G~~~~~--~~~ 172 (414)
T 2uuq_A 102 PVHTEFRKLV-SRGFTPRQVETVEPTVRKFVVERLEKLRAN-----GGGDIVTELFKPLPSMVVAH-YLGVPEED--WTQ 172 (414)
T ss_dssp THHHHHHHHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHT-----TEEEHHHHTTTHHHHHHHHH-HTTCCGGG--HHH
T ss_pred hhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc-----CCccHHHHHHHHhHHHHHHH-HhCCCHHH--HHH
Confidence 9999999987 589999999999999999999999999753 135554443 4677788998 69987642 222
Q ss_pred HHHHHHHHHHhhhhhhcccccccccc-cccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHH
Q 021610 203 FNRLKALNGERSRLAQSFEYNYGDFI-PILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDH 281 (310)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~~-P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ 281 (310)
+. ..... +... .++ |... ...+. .+.+..++..+|++|++ ++ ..|+++.
T Consensus 173 ~~---~~~~~---~~~~------~~~~p~~~----~~~~~-----~~~~~~~~~~~i~~r~~--~~-------~~dll~~ 222 (414)
T 2uuq_A 173 FD---GWTQA---IVAA------NAVDGATT----GALDA-----VGSMMAYFTGLIERRRT--EP-------ADDAISH 222 (414)
T ss_dssp HH---HHHHH---HHHH------HHC---------CCHHH-----HHHHHHHHHHHHHHHTT--SC-------CSSHHHH
T ss_pred HH---HHHHH---HHhh------cccCCchh----HHHHH-----HHHHHHHHHHHHHHHHh--CC-------CCCHHHH
Confidence 11 11111 1110 112 2211 11111 12345667778887765 11 1359999
Q ss_pred HHhhhc--CC-CCCHHHHHHHHHHHhhccccC
Q 021610 282 ILDAQT--KG-EINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 282 ll~~~~--~~-~~~~e~i~~~~~~l~~aG~~~ 310 (310)
|++... ++ .++++++..++.++++||++|
T Consensus 223 ll~~~~~~~~~~ls~~ei~~~~~~l~~AG~eT 254 (414)
T 2uuq_A 223 LVAAGVGADGDTAGTLSILAFTFTMVTGGNDT 254 (414)
T ss_dssp HHHTTTTCTTCHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHhcccccCCCCCCHHHHHHHHHHHHHhhHHH
Confidence 997653 33 489999999999999999874
No 60
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.77 E-value=8.9e-18 Score=149.57 Aligned_cols=213 Identities=9% Similarity=0.096 Sum_probs=141.8
Q ss_pred chHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhh------hhc---CCCceeEeccCCh
Q 021610 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFD------IFT---GKGQDMVFTVYGE 124 (310)
Q Consensus 54 ~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~------~~~---~~~~~~~~~~~g~ 124 (310)
|+..+.++ ++||||++ + | .++++|+||++++++|.+ ..|++++...... .+. +.+ ++..+|+
T Consensus 15 p~~~~~~l-~~yGpv~~-~-g-~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~g~ 85 (397)
T 3buj_A 15 PYPSYHWL-LRHDPVHR-G-A-HRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDI---ILFQDEP 85 (397)
T ss_dssp CHHHHHHH-HHHCSEEE-C-G-GGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTC---GGGCCTT
T ss_pred chHHHHHH-HhcCCeee-C-C-CCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccc---cccCCch
Confidence 67777766 68999999 7 5 789999999999999976 3577654211110 111 322 5678899
Q ss_pred hHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccccCCCCchHH
Q 021610 125 HWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFESQDDPLF 203 (310)
Q Consensus 125 ~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~~~~~~~~~~ 203 (310)
.|+++||++. +.|+++.++.+.+.++++++++++.|.+. +.++....+ ...+.++|+.+ ||.+.+. ...
T Consensus 86 ~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-----~~~dl~~~~~~~~~~~vi~~~-~G~~~~~--~~~- 155 (397)
T 3buj_A 86 DHGRLRGVVG-PAFSPSALRRLEPVIAGTVDDLLRPALAR-----GAMDVVDELAYPLALRAVLGL-LGLPAAD--WGA- 155 (397)
T ss_dssp HHHHHHHHHG-GGSSTTTTGGGHHHHHHHHHHHHHHHHTT-----TEEEHHHHTHHHHHHHHHHHH-HTCCGGG--HHH-
T ss_pred hHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHhhc-----CCeehHHHHHHHhHHHHHHHH-hCCCHHH--HHH-
Confidence 9999999874 89999999999999999999999999742 235554444 45677889988 9986542 111
Q ss_pred HHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHH
Q 021610 204 NRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHIL 283 (310)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll 283 (310)
+...... +...+.. .+|. +.++ +... ..+.+..++..+|++|++. + . .|+++.|+
T Consensus 156 --~~~~~~~---~~~~~~~----~~~~--~~~~----~~~~-~~~~~~~~~~~~i~~r~~~--~--~-----~dll~~ll 210 (397)
T 3buj_A 156 --VGRWSRD---VGRTLDR----GASA--EDMR----RGHA-AIAEFADYVERALARRRRE--G--G-----EDLLALML 210 (397)
T ss_dssp --HHHHHHH---HHGGGCS----SCCH--HHHH----HHHH-HHHHHHHHHHHHHHHHHHH--C--C-----CSHHHHHH
T ss_pred --HHHHHHH---HHhhcCC----CCCh--HHHH----HHHH-HHHHHHHHHHHHHHHHHcC--C--C-----CCHHHHHH
Confidence 1111111 1111110 0111 1111 1111 1234566777888887762 1 1 34999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 284 DAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 284 ~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+..+++.++++++..++.++++||++|
T Consensus 211 ~~~~~~~ls~~ei~~~~~~~~~AG~~T 237 (397)
T 3buj_A 211 DAHDRGLMSRNEIVSTVVTFIFTGHET 237 (397)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCHHHHHHHHHHHHHcCchH
Confidence 765443499999999999999999874
No 61
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.76 E-value=4.4e-17 Score=145.35 Aligned_cols=208 Identities=16% Similarity=0.204 Sum_probs=142.3
Q ss_pred chHHHHHHHHhhCCeEEEEe-cCeeEEEEcCHHHHHHHHHhcCcccCCCCCcc-hhhhhcCCCcee-EeccCC------h
Q 021610 54 NHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-VFDIFTGKGQDM-VFTVYG------E 124 (310)
Q Consensus 54 ~~~~~~~~~~~yG~v~~~~~-g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~-~~~~~~~~~~~~-~~~~~g------~ 124 (310)
++..+.+| ++|||++++++ |+.++++|+||++++++|.++ .|++++... ....... +.+. ++..+| +
T Consensus 28 p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~-~~~~~l~~~~g~~~~~~~ 103 (404)
T 2xbk_A 28 LSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYVR-SPFLDLLISDADAESGRR 103 (404)
T ss_dssp CCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSSC-CHHHHTTCBCSCHHHHHH
T ss_pred ccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCcccc-cccccceeeCCCCCCCCc
Confidence 78889999 89999999997 899999999999999999875 477765321 1111111 2331 566789 9
Q ss_pred hHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHHHHHHHHHhccccCCCCchHH
Q 021610 125 HWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNMYRIMFDRRFESQDDPLF 203 (310)
Q Consensus 125 ~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fg~~~~~~~~~~~ 203 (310)
.|+++||++ .+.|+++.++.+.+.++++++++++.|.+. +..++....+. ..+.++|+. +||.+.+. ...
T Consensus 104 ~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~----g~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~~- 174 (404)
T 2xbk_A 104 QHAETRRLL-TPLFSARRVLEMQPKVEEAADTLLDAFIAQ----GPPGDLHGELTVPFALTVLCE-VIGVPPQR--RAE- 174 (404)
T ss_dssp HHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHT----CSSEEHHHHTHHHHHHHHHHH-HHTCCGGG--HHH-
T ss_pred hHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCeeHHHHHHHHHHHHHHHH-HhCCCHHH--HHH-
Confidence 999999987 589999999999999999999999999742 12455555554 456677886 79986532 111
Q ss_pred HHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHH
Q 021610 204 NRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHIL 283 (310)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll 283 (310)
+..... .+... . .| | ...+ ..+.+..++..+|++|++. + . .|+++.|
T Consensus 175 --~~~~~~---~~~~~---~----~~---p---~~~~-----~~~~~~~~~~~~i~~r~~~--~--~-----~dll~~l- 221 (404)
T 2xbk_A 175 --LTTLLA---GIAKL---D----DR---E---GAVR-----AQDDLFGYVAGLVEHKRAE--P--G-----PDIISRL- 221 (404)
T ss_dssp --HHHHHH---HHTBS---S----CH---H---HHHH-----HHHHHHHHHHHHHHHHHHS--C--C-----SSHHHHH-
T ss_pred --HHHHHH---HHHhc---c----Cc---H---HHHH-----HHHHHHHHHHHHHHHHHhC--C--C-----CCHHHHh-
Confidence 111111 11110 0 01 1 1111 1233556777888877761 1 1 3499988
Q ss_pred hhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 284 DAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 284 ~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+ + +.++++++..++.++++||++|
T Consensus 222 ~--~-~~ls~~ei~~~~~~l~~AG~dT 245 (404)
T 2xbk_A 222 N--D-GELTEDRVAHLAMGLLFAGLDS 245 (404)
T ss_dssp H--S-SSCCHHHHHHHHHHHHHHTTHH
T ss_pred h--c-CCCCHHHHHHHHHHHHHhchHH
Confidence 3 2 3799999999999999999874
No 62
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.76 E-value=6.6e-18 Score=150.35 Aligned_cols=212 Identities=13% Similarity=0.093 Sum_probs=142.2
Q ss_pred cchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcCCCceeEeccCChhHHHHHhh
Q 021610 53 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRI 132 (310)
Q Consensus 53 ~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~ 132 (310)
.|+..+.+|.++ |||+++..|+ +.++++||+.++++|.+. +.|++|+... .....+.+...++..+|+.|+++||+
T Consensus 25 ~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~~-~~f~~~~~~~-~~~~~~~~~~~~~~~~g~~h~~~R~~ 100 (396)
T 3oft_A 25 DYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGDA-ERLSSQCLAV-TPGLGKVMQFIPLQQDGAEHKAFRTP 100 (396)
T ss_dssp CHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHCT-TTEESTTCCS-STTHHHHHCCTTTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcCc-ccccCCcccC-CCccccccccCccccCCcHHHHHHHH
Confidence 388899999988 9999999874 588999999999999654 5788887321 11111111223677899999999998
Q ss_pred hcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHH-HHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 021610 133 MTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQL-MMYNNMYRIMFDRRFESQDDPLFNRLKALNG 211 (310)
Q Consensus 133 l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~ 211 (310)
+ .+.|+++.++.+.+.+.++++++++.|.+. +.++....+.. .+.++++. +||...+. ...+...
T Consensus 101 ~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~-----~~~d~~~~~~~~~~~~v~~~-~~G~~~~~-----~~~~~~~-- 166 (396)
T 3oft_A 101 V-MKGLASRFVVALEPKVQAVARKLMESLRPR-----GSCDFVSDFAEILPLNIFLT-LIDVPLED-----RPRLRQL-- 166 (396)
T ss_dssp H-HHHTCHHHHHHHHHHHHHHHHHHHHHHGGG-----SEEEHHHHTTTTHHHHHHHH-HTTCCGGG-----HHHHHHH--
T ss_pred h-hhhhCHHHHHHHHHHHHHHHHHHHHHhhhc-----CCccHHHHHHHHHHHHHHHH-HcCCCHHH-----HHHHHHH--
Confidence 7 489999999999999999999999999752 23444444433 33344554 68864321 1111111
Q ss_pred HhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcCC-C
Q 021610 212 ERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKG-E 290 (310)
Q Consensus 212 ~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~-~ 290 (310)
...+... .. .+...+. .+.+..++..+|++|++. . ..|+++.|++...++ .
T Consensus 167 -~~~~~~~--------~~-----~~~~~~~-----~~~~~~~~~~~i~~r~~~----~-----~~d~l~~ll~~~~~~~~ 218 (396)
T 3oft_A 167 -GVQLTRP--------DG-----SMTVEQL-----KQAADDYLWPFIEKRMAQ----P-----GDDLFSRILSEPVGGRP 218 (396)
T ss_dssp -HHHHHSC--------CS-----SCCHHHH-----HHHHHHHHHHHHHHHHHS----C-----CSSHHHHHHTSCBTTBC
T ss_pred -HHHHhCC--------CC-----HHHHHHH-----HHHHHHHHHHHHHHHHhC----C-----CCCHHHHHHHhhccCCC
Confidence 1111110 00 0111111 133566778888887762 1 234999999875444 6
Q ss_pred CCHHHHHHHHHHHhhccccC
Q 021610 291 INEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 291 ~~~e~i~~~~~~l~~aG~~~ 310 (310)
++++++..++.++++||++|
T Consensus 219 l~~~el~~~~~~l~~AG~dT 238 (396)
T 3oft_A 219 WTVDEARRMCRNLLFGGLDT 238 (396)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999874
No 63
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.76 E-value=4.9e-18 Score=152.01 Aligned_cols=215 Identities=13% Similarity=0.105 Sum_probs=143.5
Q ss_pred cchHHHHHHHHhhCCeEEEE-ecC-eeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcC--CC-ceeEeccCChhHH
Q 021610 53 LNHRNLSDLAKKYGDVLLLR-MGQ-RNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTG--KG-QDMVFTVYGEHWR 127 (310)
Q Consensus 53 ~~~~~~~~~~~~yG~v~~~~-~g~-~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~--~~-~~~~~~~~g~~W~ 127 (310)
.|+..+.++.+ ||||+++. .|. .++++|+++++|++||.+ .+.|++++.......... .. .+.++..+|+.|+
T Consensus 38 dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~-~~~fs~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h~ 115 (415)
T 3mgx_A 38 ERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAP-SAPLTSEYGMMIGFDRDHPDNSGGRMMVVSEHEQHR 115 (415)
T ss_dssp THHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCT-TSSEECTTCSSTTCCSSSCCTTTTTSGGGCCHHHHH
T ss_pred ChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhC-hhhhcCCccccccccccccccccCCCccccCcHHHH
Confidence 47888888876 99999986 554 789999999999999954 457888764332211000 01 2346789999999
Q ss_pred HHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHH
Q 021610 128 KMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFESQDDPLFNRL 206 (310)
Q Consensus 128 ~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~~~~~~~~~~~~~ 206 (310)
++||++ .+.|+++.++.+.+.++++++++++.|.+.. .++....+ ...+.++|+. +||.+.+. ...+
T Consensus 116 ~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~-----~~dl~~~~~~~~~~~vi~~-l~G~~~~~-----~~~~ 183 (415)
T 3mgx_A 116 KLRKLV-GPLLSRAAARKLAERVRIEVGDVLGRVLDGE-----VCDAATAIGPRIPAAVVCE-ILGVPAED-----EDML 183 (415)
T ss_dssp HHHHHH-GGGSSHHHHHHSHHHHHHHHHHHTTTSSSSS-----CEESTTTTTTHHHHHHHHH-HHTCCGGG-----HHHH
T ss_pred HHHHHh-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHHH-HcCCCHHH-----HHHH
Confidence 999986 5899999999999999999999999886531 34444444 3467788887 58964321 1111
Q ss_pred HHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhh
Q 021610 207 KALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQ 286 (310)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~ 286 (310)
.... ..+... ....+.|. .. .+ ..+.+..++..+|++|++. + . .|+++.|++..
T Consensus 184 ~~~~---~~~~~~---~~~~~~~~-----~~-~~-----~~~~l~~~~~~~i~~rr~~--~--~-----~dll~~ll~~~ 237 (415)
T 3mgx_A 184 IDLT---NHAFGG---EDELFDGM-----TP-RQ-----AHTEILVYFDELITARRKE--P--G-----DDLVSTLVTDD 237 (415)
T ss_dssp HHHH---HHHTSC---CC----CC-----CH-HH-----HHHHHHHHHHHHHHHHHHS--C--C-----SSHHHHHHHCT
T ss_pred HHHH---HHHHcc---cCcccchH-----HH-HH-----HHHHHHHHHHHHHHHHHhC--C--C-----CCHHHHHHhCC
Confidence 1111 111111 11111221 11 11 1233566777888887761 1 2 34999999764
Q ss_pred cCCCCCHHHHHHHHHHHhhccccC
Q 021610 287 TKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 287 ~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.++++++..++.++++||++|
T Consensus 238 ---~ls~~el~~~~~~ll~AG~eT 258 (415)
T 3mgx_A 238 ---DLTIDDVLLNCDNVLIGGNET 258 (415)
T ss_dssp ---TSCHHHHHHHHHHHHHHHHTT
T ss_pred ---CCCHHHHHHHHHHHHHhhhHH
Confidence 799999999999999999886
No 64
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.75 E-value=2.7e-17 Score=147.06 Aligned_cols=215 Identities=12% Similarity=0.080 Sum_probs=143.2
Q ss_pred CcchHHHHHHHHhhCCeEEEEecC--eeEEEEcCHHHHHHHHHhcCcccCCCCCcc----hhhhhcCCCceeEeccCChh
Q 021610 52 DLNHRNLSDLAKKYGDVLLLRMGQ--RNLVVVSSPDHAKEVLHTQGVEFGSRTRNV----VFDIFTGKGQDMVFTVYGEH 125 (310)
Q Consensus 52 ~~~~~~~~~~~~~yG~v~~~~~g~--~~~vvi~~pe~i~evl~~~~~~f~~R~~~~----~~~~~~~~~~~~~~~~~g~~ 125 (310)
..+|..+.++. +||||+++++++ .+.+++++|+.+++||.+. .|++++... ....+.+.....++..+|+.
T Consensus 27 ~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~ 103 (411)
T 2dkk_A 27 PEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITNDP--RFGRAEVTQRQITRLAPHFKPRPGSLAFADQPD 103 (411)
T ss_dssp SCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTCT--TEESGGGGGSCBCBSSSCCCCCTTCSTTCCTTH
T ss_pred ccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcCC--CcccCCCCCCCccccccchhccccccccCCchH
Confidence 34678888886 799999999864 7899999999999999763 577654321 11112111022357789999
Q ss_pred HHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHHHHHHHHHhccccCCCCchHHH
Q 021610 126 WRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNMYRIMFDRRFESQDDPLFN 204 (310)
Q Consensus 126 W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fg~~~~~~~~~~~~ 204 (310)
|+++||++ .+.|+++.++.+.+.+.++++++++.|.+. +..++....+. ..+.++|+. +||.+.+. .+.
T Consensus 104 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~----g~~~dl~~~~~~~~~~~vi~~-l~G~~~~~--~~~-- 173 (411)
T 2dkk_A 104 HNRLRRAV-AGAFTVGATKRLRPRAQEILDGLVDGILAE----GPPADLVERVLEPFPIAVVSE-VMGVPAAD--RER-- 173 (411)
T ss_dssp HHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHHH----CSCEEHHHHTTTHHHHHHHHH-HHTCCSSH--HHH--
T ss_pred HHHHHHHh-hHhhCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCeehHHHHHHHHHHHHHHH-HhCCCHHH--HHH--
Confidence 99999987 589999999999999999999999999752 12455555554 467788888 59986532 111
Q ss_pred HHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHh
Q 021610 205 RLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILD 284 (310)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~ 284 (310)
+... ...+. ...+ + .+...+ ..+.+..++..+|++|++ ++ ..|+++.|++
T Consensus 174 -~~~~---~~~~~--------~~~~---~-~~~~~~-----~~~~l~~~~~~~i~~r~~--~~-------~~dll~~ll~ 223 (411)
T 2dkk_A 174 -VHSW---TRQII--------STSG---G-AEAAER-----AKRGLYGWITETVRARAG--SE-------GGDVYSMLGA 223 (411)
T ss_dssp -HHHH---HGGGC--------SSCS---C-SHHHHH-----HHHHHHHHHHHHHHTTTT--CC-------SSCHHHHHHH
T ss_pred -HHHH---HHHHH--------hccc---h-HHHHHH-----HHHHHHHHHHHHHHHHHh--CC-------CCCHHHHHHH
Confidence 1111 11111 1111 1 111111 123355667777776654 11 1359999997
Q ss_pred hhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 285 AQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 285 ~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
..+...++++++..++.++++|| +|
T Consensus 224 ~~~~~~ls~~el~~~~~~l~~AG-eT 248 (411)
T 2dkk_A 224 AVGRGEVGETEAVGLAGPLQIGG-EA 248 (411)
T ss_dssp HHHTTSSCTTSHHHHHHHHHHTH-HH
T ss_pred hcCCCCCCHHHHHHHHHHHHHhh-HH
Confidence 62223699999999999999999 75
No 65
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.74 E-value=1.9e-18 Score=156.00 Aligned_cols=217 Identities=12% Similarity=0.085 Sum_probs=129.6
Q ss_pred chHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcCCCceeEeccCChhHHHHHhhh
Q 021610 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIM 133 (310)
Q Consensus 54 ~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l 133 (310)
|+..+.++ ++||||+++..++ .++|++|+.+++||.++.. |++++.........+ .+.++..+|+.|+++||++
T Consensus 55 p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~~-f~~~~~~~~~~~~~~--~~~l~~~dg~~h~~~Rr~~ 128 (441)
T 3nc3_A 55 PYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPDI-FTTKSLVERAEPVMR--GPVLAQMHGKEHSAKRRIV 128 (441)
T ss_dssp GGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTTT-EECCCTTSCCCCSCC---------------CCHHHH
T ss_pred hHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCccc-ccccccccccccccC--CCccccCCcHHHHHHHHHH
Confidence 66667666 6899999987665 8999999999999987654 888764333332332 2346778899999999987
Q ss_pred cccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Q 021610 134 TVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNMYRIMFDRRFESQDDPLFNRLKALNGE 212 (310)
Q Consensus 134 ~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~ 212 (310)
.+.|+++.++.+.+.+.++++++++.|.+.. .++....+. ..+.++|+. +||.+.+. ... +......
T Consensus 129 -~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~-----~~dl~~~~~~~~~~~vi~~-l~G~~~~~--~~~---~~~~~~~ 196 (441)
T 3nc3_A 129 -VRSFIGDALDHLSPLIKQNAENLLAPYLERG-----KSDLVNDFGKTFAVCVTMD-MLGLDKRD--HEK---ISEWHSG 196 (441)
T ss_dssp -HHHHHHTHHHHHHHHHHHHHHHHHTTTTTTT-----EEECCCCCHHHHHHHHHHH-HTTCCGGG--HHH---HHHHHHH
T ss_pred -HhhcCHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHHHHHH-HcCCCHHH--HHH---HHHHHHH
Confidence 5999999999999999999999999986421 233222232 355677887 58975432 111 1111111
Q ss_pred hhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcC-CCC
Q 021610 213 RSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTK-GEI 291 (310)
Q Consensus 213 ~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~-~~~ 291 (310)
+......+ . .+ +... ... ....+.+..++..+|++|++ ++ ..|+++.|++...+ ..+
T Consensus 197 ~~~~~~~~-----~-~~---~~~~---~~~-~~~~~~l~~~~~~~i~~rr~--~~-------~~Dll~~Ll~~~~~~~~l 254 (441)
T 3nc3_A 197 VADFITSI-----S-QS---PEAR---AHS-LWCSEQLSQYLMPVIKERRV--NP-------GSDLISILCTSEYEGMAL 254 (441)
T ss_dssp HHHHHHCS-----C-CC---HHHH---HHH-HHHHHHHHHHHHHHHHHHTT--SC-------CSSHHHHHCC------CC
T ss_pred HHHhcccc-----c-CC---hHHH---HHH-HHHHHHHHHHHHHHHHHHHh--CC-------CCCHHHHHHHhhccCCCC
Confidence 11111100 0 01 1000 111 11223456778888888765 11 23499999976533 369
Q ss_pred CHHHHHHHHHHHhhccccC
Q 021610 292 NEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 292 ~~e~i~~~~~~l~~aG~~~ 310 (310)
+++++..++.++++||++|
T Consensus 255 s~~el~~~~~~ll~AG~eT 273 (441)
T 3nc3_A 255 SDKDILALILNVLLAATEP 273 (441)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhHH
Confidence 9999999999999999874
No 66
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.74 E-value=7.3e-17 Score=143.68 Aligned_cols=208 Identities=11% Similarity=0.086 Sum_probs=133.1
Q ss_pred HHHHHhhCCeEEEEec-Ce---eEEEEcCHHHHHHHHHhcCcccCCCCC------cchhhhh--cCCCceeEeccCChhH
Q 021610 59 SDLAKKYGDVLLLRMG-QR---NLVVVSSPDHAKEVLHTQGVEFGSRTR------NVVFDIF--TGKGQDMVFTVYGEHW 126 (310)
Q Consensus 59 ~~~~~~yG~v~~~~~g-~~---~~vvi~~pe~i~evl~~~~~~f~~R~~------~~~~~~~--~~~~~~~~~~~~g~~W 126 (310)
.+|+++ |||++++++ +. ++++|+||++++++|.++ ..|++|+. ......+ ...+. .++..+|+.|
T Consensus 20 ~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~g~~~ 96 (398)
T 1lfk_A 20 DELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPRELVG-NLMDYDPPEH 96 (398)
T ss_dssp HHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC-------------CCTT-CGGGCCTTHH
T ss_pred HHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCccccccccccc-CccccCCHHH
Confidence 346665 999999875 45 899999999999999433 35877764 1111111 11122 3566889999
Q ss_pred HHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHH-HHHHHHHHHHhccccCCCCchHHHH
Q 021610 127 RKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQL-MMYNNMYRIMFDRRFESQDDPLFNR 205 (310)
Q Consensus 127 ~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~fg~~~~~~~~~~~~~ 205 (310)
+++||++ .+.|+++.++.+.+.++++++++++.|.+. ++.++....+.. .+.++++. +||.+.+. ...
T Consensus 97 ~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~~--- 165 (398)
T 1lfk_A 97 TRLRRKL-TPGFTLRKMQRMAPYIEQIVNDRLDEMERA----GSPADLIAFVADKVPGAVLCE-LVGVPRDD--RDM--- 165 (398)
T ss_dssp HHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHH----CSSEEHHHHTTTTHHHHHHHH-HHTCCGGG--HHH---
T ss_pred HHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCccHHHHHHHHHHHHHHHH-HcCCCHHH--HHH---
Confidence 9999987 488999999999999999999999999741 124555555554 55566776 69986542 111
Q ss_pred HHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhh
Q 021610 206 LKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDA 285 (310)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~ 285 (310)
+... ...+. ...+ ..+. ... ..+.+..++..+|++|++. + ..|+++.|++.
T Consensus 166 ~~~~---~~~~~--------~~~~----~~~~----~~~-~~~~~~~~~~~~i~~r~~~--~-------~~dll~~ll~~ 216 (398)
T 1lfk_A 166 FMKL---CHGHL--------DASL----SQKR----RAA-LGDKFSRYLLAMIARERKE--P-------GEGMIGAVVAE 216 (398)
T ss_dssp HHHH---HHHTT--------CTTS----CHHH----HHH-HHHHHHHHHHHHHHHHHHS--C-------CSSHHHHHHHH
T ss_pred HHHH---HHHHH--------hccc----chHH----HHH-HHHHHHHHHHHHHHHHHhC--C-------CCCHHHHHHHh
Confidence 1111 11110 0001 1111 111 1234566777888887761 1 13599999976
Q ss_pred hcCCCCCHHHHHHHHHHHhhccccC
Q 021610 286 QTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 286 ~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
. ++.++++++..++.++++||++|
T Consensus 217 ~-~~~l~~~el~~~~~~l~~AG~dT 240 (398)
T 1lfk_A 217 Y-GDDATDEELRGFCVQVMLAGDDN 240 (398)
T ss_dssp H-GGGSCHHHHHHHHHHHHHHTSHH
T ss_pred c-CCCCCHHHHHHHHHHHHHHhccH
Confidence 5 44699999999999999999874
No 67
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.73 E-value=7e-18 Score=153.46 Aligned_cols=165 Identities=11% Similarity=0.116 Sum_probs=115.1
Q ss_pred CCCCCCCCCCCCcccccccccC----CC-cchHHHHHHHHhhCC-eEEEEecCe-------eEEEEcCHHHHHHHHH---
Q 021610 29 KRFKLPPGPLPVPVFGNWLQVG----DD-LNHRNLSDLAKKYGD-VLLLRMGQR-------NLVVVSSPDHAKEVLH--- 92 (310)
Q Consensus 29 ~~~~~ppgP~~~pilGn~~~l~----~~-~~~~~~~~~~~~yG~-v~~~~~g~~-------~~vvi~~pe~i~evl~--- 92 (310)
.+.+.+|||.++|++||++++. .. .++..+.++.++||+ ||++++++. ..|++++++..+.++.
T Consensus 6 ~Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~ 85 (473)
T 3dan_A 6 KPLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSK 85 (473)
T ss_dssp SCBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTT
T ss_pred CCCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcc
Confidence 3456689999999999998753 22 478899999999999 999999744 3444455554434332
Q ss_pred -hcCcccCCCCCcchhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCC
Q 021610 93 -TQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNG 171 (310)
Q Consensus 93 -~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 171 (310)
++...+.++.. .......+.....++..+|+.|+++|+++ .+.|+++ ++.+.+.++++++++++.|.+.... ++.
T Consensus 86 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~h~~~R~~~-~~~f~~~-~~~~~~~i~~~~~~ll~~~~~~~~~-~~~ 161 (473)
T 3dan_A 86 VEKKDLFTGTYM-PSTKLTGGYRVLSYLDPSEPRHAQLKNLL-FFMLKNS-SNRVIPQFETTYTELFEGLEAELAK-NGK 161 (473)
T ss_dssp EECSSCTTSSSC-CCGGGGTTSCCGGGCCTTSHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HSC
T ss_pred eecccccccccc-CCccccCCCcceeeeCCCcHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcc-CCc
Confidence 12222322211 11122222223345678899999999987 5889985 8999999999999999999753211 234
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccCC
Q 021610 172 IVLRRRLQLMMYNNMYRIMFDRRFES 197 (310)
Q Consensus 172 ~~~~~~~~~~~~~~i~~~~fg~~~~~ 197 (310)
++....+...+.+++++++||.+.+.
T Consensus 162 vdl~~~~~~~~~~~i~~~~~G~~~~~ 187 (473)
T 3dan_A 162 AAFNDVGEQAAFRFLGRAYFNSNPEE 187 (473)
T ss_dssp EECHHHHHHHHHHHHHHHHHSCCGGG
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 66677788888899999999987764
No 68
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.73 E-value=9.5e-17 Score=144.19 Aligned_cols=221 Identities=11% Similarity=0.022 Sum_probs=142.8
Q ss_pred cchHHHHHHHHhhCCeEEEEe-cCeeEEEEcCHHHHHHHHHhcCcccCCCCC---cchhh-----hhcCCCceeEeccCC
Q 021610 53 LNHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFGSRTR---NVVFD-----IFTGKGQDMVFTVYG 123 (310)
Q Consensus 53 ~~~~~~~~~~~~yG~v~~~~~-g~~~~vvi~~pe~i~evl~~~~~~f~~R~~---~~~~~-----~~~~~~~~~~~~~~g 123 (310)
.|+..+.++.++ |||+++.. ++.++++|++++.|++||.+. ..|++++. ..... ...+.+.+.++..+|
T Consensus 39 ~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg 116 (426)
T 3rwl_A 39 SVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAMDR 116 (426)
T ss_dssp CHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCGGGCCT
T ss_pred CccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCcccccCc
Confidence 378888888765 99999987 567899999999999999765 45776541 11111 001112234678899
Q ss_pred hhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHHHHHHHHHhccccCCCCchH
Q 021610 124 EHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNMYRIMFDRRFESQDDPL 202 (310)
Q Consensus 124 ~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fg~~~~~~~~~~ 202 (310)
+.|+++||++ .+.|+++.++.+.+.+.++++++++.|.. ++.++....+. ..+..+++. +||...+. ...
T Consensus 117 ~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~-----~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~--~~~ 187 (426)
T 3rwl_A 117 PRHDEQRKAV-SPIVAPANLAALEGTIRERVSKTLDGLPV-----GEEFDWVDRVSIEITTQMLAT-LFDFPFEE--RRK 187 (426)
T ss_dssp THHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHTSCS-----SSCEEHHHHTHHHHHHHHHHH-HHTCCGGG--THH
T ss_pred hHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhhc-----CCCcchHHHHHHHHHHHHHHH-HcCCCHHH--HHH
Confidence 9999999987 58999999999999999999999999843 23455555554 344455664 89975332 111
Q ss_pred HHHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHH
Q 021610 203 FNRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHI 282 (310)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~l 282 (310)
+...... +.. . . . |.+.+..+. ... ..+.+..++..++++|++. . ...|+++.|
T Consensus 188 ---~~~~~~~---~~~-~--~--~--~~~~~~~~~----~~~-~~~~~~~~~~~~i~~r~~~-~-------~~~dll~~l 241 (426)
T 3rwl_A 188 ---LTRWSDV---TTA-A--P--G--GGVVESWDQ----RKT-ELLECAAYFQVLWNERVNK-D-------PGNDLISML 241 (426)
T ss_dssp ---HHHHHHH---HTC-C--T--T--SSSCSSHHH----HHH-HHHHHHHHHHHHHHHHHTS-C-------CCSSHHHHH
T ss_pred ---HHHHHHH---HHh-c--c--C--ccccccHHH----HHH-HHHHHHHHHHHHHHHHhhc-C-------CCCCHHHHH
Confidence 1111111 100 0 0 0 111111111 111 1234566777888877431 1 124599999
Q ss_pred HhhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 283 LDAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 283 l~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
++..+++.++++++..++.++++||++|
T Consensus 242 l~~~~~~~ls~~el~~~~~~l~~AG~eT 269 (426)
T 3rwl_A 242 AHSPATRNMTPEEYLGNVLLLIVGGNDT 269 (426)
T ss_dssp HHCGGGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9876556799999999999999999874
No 69
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.71 E-value=7.9e-17 Score=141.91 Aligned_cols=204 Identities=12% Similarity=0.046 Sum_probs=135.2
Q ss_pred chHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCC-cc-hh-----h-hhcCCC-ceeEeccCCh
Q 021610 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR-NV-VF-----D-IFTGKG-QDMVFTVYGE 124 (310)
Q Consensus 54 ~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~-~~-~~-----~-~~~~~~-~~~~~~~~g~ 124 (310)
|+..+.++ ++||||++++ | .+++++|+.++++|.++ +.|++++. .. .. . .+.+.. ...++..+|+
T Consensus 1 p~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~ 74 (367)
T 3b4x_A 1 MYDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTSDPP 74 (367)
T ss_dssp CHHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCCCCGGGSSGGGCCTT
T ss_pred CCHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchhhcccccccccCCch
Confidence 35567777 5799999988 4 89999999999999876 47888753 21 12 2 222210 1235667899
Q ss_pred hHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccccCCCCchHH
Q 021610 125 HWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFESQDDPLF 203 (310)
Q Consensus 125 ~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~~~~~~~~~~ 203 (310)
.|+++||++ .+.|+++.++. +.++++++++++.|. + .++....+ ...+.++|+. +||.+ + +...+
T Consensus 75 ~h~~~R~~~-~~~fs~~~l~~--~~i~~~~~~l~~~l~---g----~~d~~~~~~~~~~~~vi~~-~~G~~-~--~~~~~ 140 (367)
T 3b4x_A 75 LHDELRNLT-ADAFNPSNLPV--DFVREVTVKLLSELD---E----EFDVIESFAIPLPILVISK-MLGIN-P--DVKKV 140 (367)
T ss_dssp HHHHHHHTT-GGGGSGGGSCH--HHHHHHHHHHHHTCC---S----EEEHHHHTTTHHHHHHHHH-HHTCC-C--CHHHH
T ss_pred hHHHHHHHH-HHhcCHhhhcc--hHHHHHHHHHHHhcc---C----CcchHHHHHHhhHHHHHHH-HcCCC-C--cHHHH
Confidence 999999987 58999999887 899999999999885 1 24555444 4667788998 79987 3 22221
Q ss_pred HHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHH
Q 021610 204 NRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHIL 283 (310)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll 283 (310)
..... .+...+ +..|.+. +.. + ..+.+..++..+|++|++ ++ ..|+++.|+
T Consensus 141 ---~~~~~---~~~~~~-----~~~p~~~---~~~-~-----~~~~~~~~~~~~i~~r~~--~~-------~~dll~~ll 191 (367)
T 3b4x_A 141 ---KDWSD---LVALRL-----GRADEIF---SIG-R-----KYLELISFSKKELDSRKG--KE-------IVDLTGKIA 191 (367)
T ss_dssp ---HHHHH---HHHTTT-----TSTTGGG---CCC-H-----HHHHHHHHHHHHHHHHTT--TC-------CSSHHHHHH
T ss_pred ---HHHHH---HHHhcc-----CCChhhH---HHH-H-----HHHHHHHHHHHHHHHHhc--CC-------CCCHHHHHH
Confidence 11111 111111 1123211 111 1 112345667778877765 11 135999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 284 DAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 284 ~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+. .++++++..++.++++||++|
T Consensus 192 ~~----~ls~~el~~~~~~l~~AG~eT 214 (367)
T 3b4x_A 192 NS----NLSELEKEGYFILLMIAGNET 214 (367)
T ss_dssp TS----SSCHHHHHHHHHHHHHTTTHH
T ss_pred hc----cCCHHHHHHHHHHHHHhhhHH
Confidence 75 689999999999999999875
No 70
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.71 E-value=3.2e-17 Score=146.87 Aligned_cols=216 Identities=12% Similarity=0.102 Sum_probs=139.5
Q ss_pred chHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCC-cchhh-----hhcCCCceeEeccCChhHH
Q 021610 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR-NVVFD-----IFTGKGQDMVFTVYGEHWR 127 (310)
Q Consensus 54 ~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~-~~~~~-----~~~~~~~~~~~~~~g~~W~ 127 (310)
|+.. ++.++||+++++++|+.. ++|++++.|++||.++. |+.... ..... .......+.++..+|+.|+
T Consensus 35 P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h~ 109 (416)
T 3p3o_A 35 SWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKR--LISGFRGLVDMVGTPEGPVRDFMVDFLQSLDGADHR 109 (416)
T ss_dssp CTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTT--EECSHHHHHHHHTCCSSHHHHHHHHSGGGCCHHHHH
T ss_pred CchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcc--cccCCccccccccccccchhhhhcCccccCCchHHH
Confidence 6666 566789999999998777 99999999999998764 332211 00000 0000011237789999999
Q ss_pred HHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHHHHHHHHHhccccCCCCchHHHHH
Q 021610 128 KMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNMYRIMFDRRFESQDDPLFNRL 206 (310)
Q Consensus 128 ~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fg~~~~~~~~~~~~~~ 206 (310)
++||++ .+.|+++.++.+.+.+.++++++++.| .. +.++....+. ..+.++|+. +||.+.+. ...+
T Consensus 110 ~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l-~~-----g~~d~~~~~~~~~~~~vi~~-l~G~~~~~-----~~~~ 176 (416)
T 3p3o_A 110 RLRGLA-THPFTPRRITAVQPFVRSTVEQLIDKL-PQ-----GDFDFVQHFPHPLPALVMCQ-LLGFPLED-----YDTV 176 (416)
T ss_dssp HHHHTT-CGGGSHHHHHHHHHHHHHHHHHHHHTC-CS-----SSEEHHHHTTTHHHHHHHHH-HHTCCGGG-----HHHH
T ss_pred HHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhh-cc-----CCccHHHHHHHHHHHHHHHH-HhCCCHHH-----HHHH
Confidence 999987 599999999999999999999999999 32 2355445443 466678888 58975332 1111
Q ss_pred HHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhh
Q 021610 207 KALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQ 286 (310)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~ 286 (310)
.... ..+... +....+ ....+... ...+.+..++..+|++|++. + . .|+++.|++..
T Consensus 177 ~~~~---~~~~~~--------~~~~~~--~~~~~~~~-~~~~~l~~~~~~~i~~rr~~--~--~-----~dll~~ll~~~ 233 (416)
T 3p3o_A 177 GRLS---IETNLG--------LALSND--QDILVKVE-QGLGRMFDYLVAAIEKRKVE--P--G-----DDLTSDIVRAF 233 (416)
T ss_dssp HHHH---HTTCGG--------GTTCSC--HHHHHHHH-HHHHHHHHHHHHHHHHHHHS--C--C-----SSHHHHHHHHH
T ss_pred HHHH---HHHHhh--------cccccc--hhhHHHHH-HHHHHHHHHHHHHHHHHHhC--C--C-----ccHHHHHHHhh
Confidence 1111 111111 111000 00011111 12244567788888887762 1 2 34999999876
Q ss_pred cCCCCCHHHHHHHHHHHhhccccC
Q 021610 287 TKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 287 ~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
.++.++++++..++.++++||++|
T Consensus 234 ~~~~ls~~el~~~~~~l~~AG~eT 257 (416)
T 3p3o_A 234 HDGVLDDYELRTLVATVLVAGYET 257 (416)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhhccH
Confidence 555899999999999999999874
No 71
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.68 E-value=1e-15 Score=136.07 Aligned_cols=216 Identities=15% Similarity=0.090 Sum_probs=141.8
Q ss_pred chHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcCCCceeEeccCChhHHHHHhhh
Q 021610 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIM 133 (310)
Q Consensus 54 ~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l 133 (310)
|+..+.++.+ +|||+++..| .+++++++.+++++.+. .|+.++.......... +.+.++..+|+.|+++||++
T Consensus 22 p~~~~~~lr~-~~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~-~~~~l~~~dg~~h~~~R~~~ 94 (394)
T 2wiy_A 22 PYPWYRRLQQ-DHPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAV-ASDTALGSDPPHHTVLRRQT 94 (394)
T ss_dssp CHHHHHHHHH-HCSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGG-GGGSGGGCCTTHHHHHHHHH
T ss_pred ccHHHHHHHh-cCCeEEecCC---eEEEcCHHHHHHHHcCC--Cccccccccccccchh-cccccccCCchHHHHHHHHH
Confidence 7777877755 6899987654 68999999999999653 5765532111111111 11236788999999999987
Q ss_pred cccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Q 021610 134 TVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGER 213 (310)
Q Consensus 134 ~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~ 213 (310)
.+.|+++.++.+.+.+++.+.++++.|.+ ++.++....+...+.++++..+||.+.+. ...+ ...+...
T Consensus 95 -~~~fs~~~~~~~~~~i~~~~~~l~~~~~~-----~~~~d~~~~~~~~~~~vi~~~~~G~~~~~--~~~~--~~~~~~~- 163 (394)
T 2wiy_A 95 -NKWFTPKLVDGWVRTTRELVGDLLDGVEA-----GQVIEARRDLAVVPTHVTMARVLQLPEDD--ADAV--MEAMFEA- 163 (394)
T ss_dssp -HTTCSHHHHHHHTHHHHHHHHHHHHTCCT-----TCCEEHHHHHTHHHHHHHHHHHHTCCCCC--HHHH--HHHHHHH-
T ss_pred -HhccCHHHHHHHHHHHHHHHHHHHHHHhc-----cCCeeHHHHHHhhhHHHHHHHHcCCCHhH--HHHH--HHHHHHH-
Confidence 59999999999999999999999998853 13466666677777788899999985431 1111 1111110
Q ss_pred hhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcCCCCCH
Q 021610 214 SRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKGEINE 293 (310)
Q Consensus 214 ~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~~~~~ 293 (310)
+... ...|... .+ +.... ..+.+..++..+|++|++ ++ . .|+++.|++..+++.+|+
T Consensus 164 --~~~~------~~~p~~~----~~-~~~~~-~~~~l~~~~~~~i~~rr~--~~--~-----~dll~~Ll~~~~~~~ls~ 220 (394)
T 2wiy_A 164 --MLMQ------SAEPADG----DV-DRAAV-AFGYLSARVAEMLEDKRV--NP--G-----DGLADSLLDAARAGEITE 220 (394)
T ss_dssp --HGGG------SSSCCTT----HH-HHHHH-HHHHHHHHHHHHHHHHHH--SC--C-----SSHHHHHHHHHHTTSSCH
T ss_pred --HHhc------cCCccch----HH-HHHHH-HHHHHHHHHHHHHHHhhc--CC--C-----CcHHHHHHHhhhcCCCCH
Confidence 1000 1112211 11 11111 123455667778887765 21 1 249999997655567999
Q ss_pred HHHHHHHHHHhhccccC
Q 021610 294 DNVLYIVENINVAGMFI 310 (310)
Q Consensus 294 e~i~~~~~~l~~aG~~~ 310 (310)
+++..++.++++||++|
T Consensus 221 ~el~~~~~~l~~AG~eT 237 (394)
T 2wiy_A 221 SEAIATILVFYAVGHMA 237 (394)
T ss_dssp HHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999999999885
No 72
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.66 E-value=2.6e-16 Score=140.00 Aligned_cols=209 Identities=11% Similarity=0.048 Sum_probs=134.4
Q ss_pred cchHHHHHHHHhhCCeEEEEe-cCeeEEEEcCHHHHHHHHHhcCcccC-C-CCCc--chhh--hhcC-CCceeEeccCCh
Q 021610 53 LNHRNLSDLAKKYGDVLLLRM-GQRNLVVVSSPDHAKEVLHTQGVEFG-S-RTRN--VVFD--IFTG-KGQDMVFTVYGE 124 (310)
Q Consensus 53 ~~~~~~~~~~~~yG~v~~~~~-g~~~~vvi~~pe~i~evl~~~~~~f~-~-R~~~--~~~~--~~~~-~~~~~~~~~~g~ 124 (310)
.++..+.+| ++|||++++++ |+.+.++++||++++++|.++ .|+ + ++.. .... .+.+ .+.+ ++..
T Consensus 17 ~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~--- 89 (396)
T 1n40_A 17 RIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNN-MGNI--- 89 (396)
T ss_dssp SCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGH-HHHH---
T ss_pred CccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhh-hhhH---
Confidence 378899999 99999999998 889999999999999999875 376 5 5421 1111 1111 1222 3333
Q ss_pred hHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHH-HHHHHHHHHHHhccccCCCCchHH
Q 021610 125 HWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQ-LMMYNNMYRIMFDRRFESQDDPLF 203 (310)
Q Consensus 125 ~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~fg~~~~~~~~~~~ 203 (310)
.|+++||++. +.|+++ ++.+.+.+.++++++++.|.+. ++.++....+. ..+.++|+. +||.+.+. ...
T Consensus 90 ~h~~~R~~~~-~~fs~~-~~~~~~~i~~~~~~l~~~l~~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--~~~- 159 (396)
T 1n40_A 90 ADAGLRKAVM-KAITPK-APGLEQFLRDTANSLLDNLITE----GAPADLRNDFADPLATALHCK-VLGIPQED--GPK- 159 (396)
T ss_dssp HHTTCHHHHH-HHTSSC-STTHHHHHHHHHHHHHHHHHHH----CSCEETTTTTHHHHHHHHHHH-HHTCCGGG--HHH-
T ss_pred HHHHHHHHHH-HhhChH-HHHhHHHHHHHHHHHHHHHHhc----CCCccHHHHHHHHhHHHHHHH-HhCCChhh--HHH-
Confidence 9999999874 889999 9999999999999999999751 12344433343 466788888 79986542 111
Q ss_pred HHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHH
Q 021610 204 NRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHIL 283 (310)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll 283 (310)
+..... .+.... ...|. +. ... ..+.+ .++..+|+ . ++ .+.|+++.|+
T Consensus 160 --~~~~~~---~~~~~~-----~~~p~-----~~----~~~-~~~~~-~~~~~~i~---~---~~-----~~~dll~~ll 207 (396)
T 1n40_A 160 --LFRSLS---IAFMSS-----ADPIP-----AA----KIN-WDRDI-EYMAGILE---N---PN-----ITTGLMGELS 207 (396)
T ss_dssp --HHHTHH---HHTBCC-----SSCCH-----HH----HHH-HHHHH-HHHHHHHH---C---TT-----CCSHHHHHHH
T ss_pred --HHHHHH---HHhccc-----cCCCH-----HH----HHH-HHHHH-HHHHHHHh---C---CC-----CCCCHHHHHH
Confidence 111111 111110 00121 11 111 11223 44555554 1 11 1346999999
Q ss_pred hhh-c--CCCCCHHHHHHHHHHHhhccccC
Q 021610 284 DAQ-T--KGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 284 ~~~-~--~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+.. + ...++++++..++.++++||++|
T Consensus 208 ~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 237 (396)
T 1n40_A 208 RLRKDPAYSHVSDELFATIGVTFFGAGVIS 237 (396)
T ss_dssp HHHTSGGGTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccccCCCCHHHHHHHHHHHHHHhhhh
Confidence 765 2 33699999999999999999874
No 73
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.66 E-value=2.5e-15 Score=132.35 Aligned_cols=203 Identities=14% Similarity=0.130 Sum_probs=131.6
Q ss_pred chHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCC--cchhh-----hh-cCCCc-eeEeccCCh
Q 021610 54 NHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTR--NVVFD-----IF-TGKGQ-DMVFTVYGE 124 (310)
Q Consensus 54 ~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~--~~~~~-----~~-~~~~~-~~~~~~~g~ 124 (310)
|+..+.++ ++||||+++ | +.+++++|++++++|.+. ..|++|+. ...+. .. .+... ..++..+|+
T Consensus 1 p~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 74 (368)
T 1io7_A 1 MYDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPP 74 (368)
T ss_dssp CHHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCCTT
T ss_pred CCHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-ccccccccccccccccccccccccccccccccccCCCh
Confidence 35567777 589999987 5 589999999999999874 47988874 10111 10 11101 336678899
Q ss_pred hHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccccCCCCchHH
Q 021610 125 HWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFESQDDPLF 203 (310)
Q Consensus 125 ~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~~~~~~~~~~ 203 (310)
.|+++||++ .+.|+++.++.+.+.++++++++++.| +. +.++....+ ...++++|+.+ ||.+.+. .+
T Consensus 75 ~h~~~R~~~-~~~f~~~~~~~~~~~i~~~~~~l~~~l-~~-----g~~d~~~~~~~~~~~~vi~~~-~G~~~~~--~~-- 142 (368)
T 1io7_A 75 LHDELRSMS-ADIFSPQKLQTLETFIRETTRSLLDSI-DP-----REDDIVKKLAVPLPIIVISKI-LGLPIED--KE-- 142 (368)
T ss_dssp HHHHHHGGG-TTTTCHHHHHHHHHHHHHHHHHHHHTC-CT-----TSEEHHHHTTTHHHHHHHHHH-HTCCGGG--HH--
T ss_pred HHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHh-hc-----CCccHHHHHHHHHHHHHHHHH-hCCCHHH--HH--
Confidence 999999987 589999999999999999999999999 42 135555555 46777899998 9986532 11
Q ss_pred HHHHHHHHHhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHH
Q 021610 204 NRLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHIL 283 (310)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll 283 (310)
.+... ...+... ..+ |. . .+. ... ..+.+..++..++ . + ..|+++.|+
T Consensus 143 -~~~~~---~~~~~~~----~~~--p~--~-~~~----~~~-~~~~~~~~~~~~i----~---~-------~~d~l~~ll 190 (368)
T 1io7_A 143 -KFKEW---SDLVAFR----LGK--PG--E-IFE----LGK-KYLELIGYVKDHL----N---S-------GTEVVSRVV 190 (368)
T ss_dssp -HHHHH---GGGCTTS----CCC--TT--C-HHH----HHH-HHHHHHHHHHHHT----T---S-------SCHHHHHHH
T ss_pred -HHHHH---HHHHHhc----cCC--hH--H-HHH----HHH-HHHHHHHHHHHHh----C---C-------CCCHHHHHH
Confidence 11111 1111110 001 22 0 111 111 1122333343333 1 1 134999999
Q ss_pred hhhcCCCCCHHHHHHHHHHHhhccccC
Q 021610 284 DAQTKGEINEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 284 ~~~~~~~~~~e~i~~~~~~l~~aG~~~ 310 (310)
+. .++++++..++.++++||++|
T Consensus 191 ~~----~l~~~ei~~~~~~l~~AG~dT 213 (368)
T 1io7_A 191 NS----NLSDIEKLGYIILLLIAGNET 213 (368)
T ss_dssp TS----SCCHHHHHHHHHHHHHTTHHH
T ss_pred hc----cCCHHHHHHHHHHHHHhhhHH
Confidence 65 689999999999999999874
No 74
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.61 E-value=2.2e-15 Score=131.42 Aligned_cols=189 Identities=15% Similarity=0.116 Sum_probs=121.4
Q ss_pred HhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcCCCceeEeccCChhHHHHHhhhcccCCChHH
Q 021610 63 KKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKV 142 (310)
Q Consensus 63 ~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~ 142 (310)
++||||+++ | +++++||++++++|.++ ..|++|+....... .+ ..++..+|+.|+++||++ .+.|+++.
T Consensus 2 r~~gpv~~~--g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~---~~-~~l~~~~g~~~~~~R~~~-~~~fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD--G---AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNA---GG-ISFITMDNPEHKEFRDIS-APYFLPSK 70 (343)
T ss_dssp -CCCCEEET--T---EEEECSHHHHHHHHHCT-TTEESSCSSCCC------C-CGGGGCCHHHHHHHHHHH-HHHHSHHH
T ss_pred CCcCCeeee--C---eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCc---cc-cccccCCchHHHHHHHHh-hhhcCHHH
Confidence 579999986 4 89999999999999876 47888863211111 12 235668899999999987 58999999
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhhhhhhccc
Q 021610 143 VQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL-QLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFE 221 (310)
Q Consensus 143 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (310)
++.+.+.++++++++++.|. .++....+ ...++++|+.+ ||.+.+. .+. +.... ..+...+
T Consensus 71 l~~~~~~i~~~~~~l~~~l~--------~~d~~~~~~~~~~~~vi~~~-~G~~~~~--~~~---~~~~~---~~~~~~~- 132 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNID--------NKDIISEYAVRLPVNIISKI-LGIPDSD--MPL---FKLWS---DYIIGNK- 132 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTCT--------TSCHHHHTTTHHHHHHHHHH-HTCCGGG--HHH---HHHHH---HHHHTSC-
T ss_pred HHHHHHHHHHHHHHHHHhcc--------ccCHHHHHhhhhhHHHHHHH-cCCCHHH--HHH---HHHHH---HHHhhcc-
Confidence 99999999999999998886 13344444 56777899998 9986532 111 11111 1111110
Q ss_pred ccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcCC-CCCHHHHHHHH
Q 021610 222 YNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKG-EINEDNVLYIV 300 (310)
Q Consensus 222 ~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~-~~~~e~i~~~~ 300 (310)
.|.+. .+.+ . . ..+.+..++..++ ..| ++.|++...++ .++++++..++
T Consensus 133 ------~p~~~----~~~~-~-~-~~~~~~~~~~~~i----------------~~d-l~~ll~~~~~~~~l~~~ei~~~~ 182 (343)
T 2rfb_A 133 ------RDENF----NYVN-N-R-MVSRLLEIFKSDS----------------HGI-INVLAGSSLKNRKLTMDEKIKYI 182 (343)
T ss_dssp ------CSSHH----HHHH-H-H-HHHHHHHHHHSCC----------------SSH-HHHHHTCBCSSSBCCHHHHHHHH
T ss_pred ------Ccchh----hHHH-H-H-HHHHHHHHHHHHH----------------hcc-HHHHHhhhcCCCCCCHHHHHHHH
Confidence 13211 1111 1 1 1111222221111 246 88888764333 59999999999
Q ss_pred HHHhhccccC
Q 021610 301 ENINVAGMFI 310 (310)
Q Consensus 301 ~~l~~aG~~~ 310 (310)
.++++||++|
T Consensus 183 ~~~~~AG~dT 192 (343)
T 2rfb_A 183 MLLIIGGNET 192 (343)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhHH
Confidence 9999999874
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.51 E-value=1.5e-13 Score=122.76 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=86.4
Q ss_pred CCCCccccc-c--cccCCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcc---hhhhh
Q 021610 37 PLPVPVFGN-W--LQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV---VFDIF 110 (310)
Q Consensus 37 P~~~pilGn-~--~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~---~~~~~ 110 (310)
+.++|.+|- . ..+..+ |+..+.++. ++|||++ .++.++.+|++++.|++||.+. ..|+++.... .....
T Consensus 17 ~~~~P~~~~dp~~~~~~~d-P~~~~~~lR-~~gPV~~--~~~~~~~~vt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~ 91 (412)
T 4dnj_A 17 GAGVPHLGIDPFALDYFAD-PYPEQETLR-EAGPVVY--LDKWNVYGVARYAEVYAVLNDP-LTFCSSRGVGLSDFKKEK 91 (412)
T ss_dssp STTSCEECCCTTSHHHHHS-CHHHHHHHH-HHCSSEE--ETTTTEEEECSHHHHHHHHTCT-TTEESTTCSSSSCTTTSC
T ss_pred CCCCCccCCCCCCHHHHhC-cHHHHHHHH-hcCCEEE--ECCCCEEEECCHHHHHHHHcCC-ccccCCCccccccccccc
Confidence 346787762 1 222233 777777774 5899974 6677889999999999999654 3465432111 11111
Q ss_pred cCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcC
Q 021610 111 TGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKD 164 (310)
Q Consensus 111 ~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~ 164 (310)
.....+.++..+|+.|+++||++ ++.|+++.++.+.+.+.+.++++++.+...
T Consensus 92 ~~~~~~~~~~~Dg~~H~r~R~~~-~~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~ 144 (412)
T 4dnj_A 92 PWRPPSLILEADPPAHTRTRAVL-SKVLSPATMKRLRDGFAAAADAKIDELLAR 144 (412)
T ss_dssp CSSCCCTTTTCCTTHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCccccCChHHHHHHHhhc-ccccCHHHHHHhhHHHHHHHHHHHHhhhcc
Confidence 11122346778999999999987 599999999999999999999999998753
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.38 E-value=1.6e-11 Score=109.74 Aligned_cols=218 Identities=11% Similarity=0.095 Sum_probs=130.7
Q ss_pred chHHHHHHHHhhC-CeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcchhhhhcCCCceeEeccCChhHHHHHhh
Q 021610 54 NHRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRI 132 (310)
Q Consensus 54 ~~~~~~~~~~~yG-~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~g~~W~~~Rk~ 132 (310)
+|..+.++.++.+ +++..-.|+ ...+|+.++.|++||.+. ..|+++....... .......+++..+++.|+++||+
T Consensus 39 ~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d~-~~fs~~~~~~~~~-~~~~~~~~~~~~D~p~H~r~Rrl 115 (417)
T 4dxy_A 39 YHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSDP-TRFSSEVIFLPKE-AGEKAQMVPTKMDPPEHTPYRKA 115 (417)
T ss_dssp HHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTCT-TTEESSCCSSSTT-SSCSSCTTTTTCCTTTHHHHHHH
T ss_pred hHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcCc-hhccCCCcccccc-cccccccCcccCCcHHHHHHHHH
Confidence 6667777755433 455544443 466789999999999653 4687654221111 11112233556789999999998
Q ss_pred hcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHHHH-HHHHHHHHHHhccccCCCCchHHHHHHHHHH
Q 021610 133 MTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQL-MMYNNMYRIMFDRRFESQDDPLFNRLKALNG 211 (310)
Q Consensus 133 l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~fg~~~~~~~~~~~~~~~~~~~ 211 (310)
+ ++.|+++.++.+.+.+.+.++++++.|... +.++....+.. ....+++. ++|...+. ...+.....
T Consensus 116 l-~~~Fs~~~l~~~~~~i~~~~~~lld~l~~~-----g~~D~v~~~a~~l~~~vi~~-llg~~~~d-----~~~~~~~~~ 183 (417)
T 4dxy_A 116 L-DKGLNLAKIRKVEDKVREVASSLIDSFAAR-----GECDFAAEYAELFPVHVFMA-LADLPLED-----IPVLSEYAR 183 (417)
T ss_dssp H-HHHHCHHHHHTTHHHHHHHHHHHHHHHHTT-----SEEEHHHHTTTTHHHHHHHH-HTTCCGGG-----HHHHHHHHH
T ss_pred h-hhhcCHHHHHHHHHHHHHHHHHHHHHhhhc-----CCeeeHHHHHhhhHHHHHHH-HcCCCHHH-----HHHHHhhhh
Confidence 7 599999999999999999999999999753 23444444332 23344444 46764321 111111111
Q ss_pred HhhhhhhcccccccccccccccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCCCcchhcHHHHHHhhhcCC-C
Q 021610 212 ERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKERRLQLFKDYFVEERKKLASTKSMSNESLKCAIDHILDAQTKG-E 290 (310)
Q Consensus 212 ~~~~~~~~~~~~~~d~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~~~~d~~~~~ll~~ll~~~~~~-~ 290 (310)
.+.... ...|. .. .... ....+.+..++..++++|++ .+ . .++++.|+....++ .
T Consensus 184 ---~~~~~~-----~~~~~--~~----~~~~-~~~~~~~~~~~~~li~~rr~--~~--~-----ddl~s~L~~~~~~~~~ 239 (417)
T 4dxy_A 184 ---QMTRPE-----GNTPE--EM----ATDL-EAGNNGFYAYVDPIIRARVG--GD--G-----DDLITLMVNSEINGER 239 (417)
T ss_dssp ---HHHSCC-----CSSHH--HH----HHHH-HHHHHHHHHHHHHHHHHHTT--CC--C-----CSHHHHHHTCEETTEE
T ss_pred ---hhcccc-----ccChH--HH----HHHH-HHHHHHHHHHHHHHHHHHhc--CC--c-----cchhhhhccccccCCc
Confidence 111100 01110 00 0111 11223455667777877765 11 2 34999999775444 6
Q ss_pred CCHHHHHHHHHHHhhccccC
Q 021610 291 INEDNVLYIVENINVAGMFI 310 (310)
Q Consensus 291 ~~~e~i~~~~~~l~~aG~~~ 310 (310)
++++++..++..+++||++|
T Consensus 240 ~~~~e~~~~~~~ll~AG~eT 259 (417)
T 4dxy_A 240 IAHDKAQGLISLLLLGGLDT 259 (417)
T ss_dssp CCHHHHHHHHHHHHHHTTHH
T ss_pred cchhHHHHHHHHHHhhcccc
Confidence 99999999999999999875
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=97.90 E-value=5e-08 Score=85.70 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=80.3
Q ss_pred CCCC-CCCCccccccccc----CCCcchHHHHHHHHhhCCeEEEEecCeeEEEEcCHHHHHHHHHhcCcccCCCCCcc--
Q 021610 33 LPPG-PLPVPVFGNWLQV----GDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-- 105 (310)
Q Consensus 33 ~ppg-P~~~pilGn~~~l----~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~pe~i~evl~~~~~~f~~R~~~~-- 105 (310)
+||| |.++|++|+..++ ....++..+.++.++ ||++.. .+.+++++++.+++||.+. .|+.++...
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d~--~f~~~~~~~~~ 107 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDDP--AFTRATGRTPE 107 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHCS--SEESSCCCCCH
T ss_pred CCCcccccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcCC--CcCCCcccccc
Confidence 4667 5578999987442 123478888888765 998754 4689999999999999863 587654211
Q ss_pred h-------hhhhcCCCceeEeccCChhHHHHHhhhcccCCChHHHHHhHHHHHHHHHHHHHHHhcCcccccCChhHHHHH
Q 021610 106 V-------FDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRL 178 (310)
Q Consensus 106 ~-------~~~~~~~~~~~~~~~~g~~W~~~Rk~l~~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~ 178 (310)
. ...+ + ..++..+|+.| ++.|+ . .+.+++.++++++.|. . .++....+
T Consensus 108 ~~~~~~~~~~~~-~---~~l~~~dg~~H--------~~~Ft-----~-~~~i~~~~~~ll~~~~-g------~~Dl~~~~ 162 (381)
T 2yjn_B 108 WMRAAGAPPAEW-A---QPFRDVHAASW--------EGEVP-----D-VGELAESFAGLLPGAG-A------RLDLVGDF 162 (381)
T ss_dssp HHHHHTCCHHHH-T---HHHHHHHHCCC--------CSCCC-----C-CSCHHHHTSTTSCC-------------CCCCC
T ss_pred cccccccccchh-h---hhhhhCCchhh--------hhccC-----C-hHHHHHHHHHHHHhcc-C------cchHHHHH
Confidence 1 1112 1 12455778888 36777 3 6778888888888775 1 13332222
Q ss_pred -HHHHHHHHHHHHhccccC
Q 021610 179 -QLMMYNNMYRIMFDRRFE 196 (310)
Q Consensus 179 -~~~~~~~i~~~~fg~~~~ 196 (310)
.....++|+++ ||.+.+
T Consensus 163 a~~l~~~vi~~l-~G~~~~ 180 (381)
T 2yjn_B 163 AWQVPVQGMTAV-LGAAGV 180 (381)
T ss_dssp CTHHHHHHHHTC------C
T ss_pred HHHHHHHHHHHH-cCCCHH
Confidence 35667889985 998654
No 78
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.20 E-value=0.4 Score=32.43 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=46.8
Q ss_pred cccccccccCC-CcchHHHHHHHHhhC-CeEEEEecCeeEEEEcCHHHHHHHHHh-cCcccCCCCC
Q 021610 41 PVFGNWLQVGD-DLNHRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHT-QGVEFGSRTR 103 (310)
Q Consensus 41 pilGn~~~l~~-~~~~~~~~~~~~~yG-~v~~~~~g~~~~vvi~~pe~i~evl~~-~~~~f~~R~~ 103 (310)
-++||+..=.. +.....+.++..+|| +|..+ .|++-+|...+.+.++.++.. ++..+-+|+.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 45899975222 112345788999995 99888 678999999999999999875 6767777774
No 79
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=87.19 E-value=3.4 Score=28.53 Aligned_cols=66 Identities=24% Similarity=0.324 Sum_probs=46.1
Q ss_pred CCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEec------CeeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 33 LPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG------QRNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 33 ~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g------~~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
.||.|..--++||++.-. ....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~---t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 75 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKI---TAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR 75 (115)
T ss_dssp CCTTCCSEEEEESCCTTC---CHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC
T ss_pred CCCCCCCEEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 466666667889986321 345678888999999988872 2456777799999998874 54444443
No 80
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.34 E-value=3.7 Score=27.96 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=42.8
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEec--------CeeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g--------~~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
.--++||++.- -....+.++..+||+|..+.+. +.-.|...+++.++.++..++..+.+|+
T Consensus 12 ~~lfV~~Lp~~---~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~ 80 (103)
T 1s79_A 12 RSVYIKGFPTD---ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 80 (103)
T ss_dssp GCEEEECCCTT---CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTT
T ss_pred CEEEEECCCCC---CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEE
Confidence 34567888632 1345678888999999988774 2346677899999999986555555554
No 81
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=84.21 E-value=1.4 Score=30.84 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=47.6
Q ss_pred CCCCCCCCcccccccccCC--Cc-----chHHHHHHHHhhCCeEEEEecC-----eeEEEEcCHHHHHHHHHh-cCcccC
Q 021610 33 LPPGPLPVPVFGNWLQVGD--DL-----NHRNLSDLAKKYGDVLLLRMGQ-----RNLVVVSSPDHAKEVLHT-QGVEFG 99 (310)
Q Consensus 33 ~ppgP~~~pilGn~~~l~~--~~-----~~~~~~~~~~~yG~v~~~~~g~-----~~~vvi~~pe~i~evl~~-~~~~f~ 99 (310)
.||-|...-+|-|+..... +. ....+.+...+||.|..+.+.. .-.|-..+++.++.++.. ++..|.
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4678888888899876432 11 1234566678999999888742 234556699999888765 666677
Q ss_pred CCC
Q 021610 100 SRT 102 (310)
Q Consensus 100 ~R~ 102 (310)
+|+
T Consensus 82 GR~ 84 (114)
T 3s6e_A 82 GKM 84 (114)
T ss_dssp TEE
T ss_pred CEE
Confidence 665
No 82
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=80.93 E-value=3 Score=28.61 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=45.7
Q ss_pred CCCCCCCcccccccccC--CCcchHHHHHHHHhhCCeEEEEecC----------eeEEEEcCHHHHHHHHHh-cCcccCC
Q 021610 34 PPGPLPVPVFGNWLQVG--DDLNHRNLSDLAKKYGDVLLLRMGQ----------RNLVVVSSPDHAKEVLHT-QGVEFGS 100 (310)
Q Consensus 34 ppgP~~~pilGn~~~l~--~~~~~~~~~~~~~~yG~v~~~~~g~----------~~~vvi~~pe~i~evl~~-~~~~f~~ 100 (310)
.|.|...-+|+|+..-. .+.....+.+...+||.|..+++.. .-.|-..+++.+..+... ++..|.+
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 35566777889987421 1113456778889999999887632 124556699989888765 6666766
Q ss_pred CC
Q 021610 101 RT 102 (310)
Q Consensus 101 R~ 102 (310)
|+
T Consensus 84 r~ 85 (105)
T 2pe8_A 84 RV 85 (105)
T ss_dssp EE
T ss_pred cE
Confidence 65
No 83
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=80.54 E-value=3.3 Score=25.90 Aligned_cols=58 Identities=10% Similarity=0.225 Sum_probs=39.4
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
++||++. +-....+.++..+||++..+.+.. .-.|-..+++.++.++..++..+.+|+
T Consensus 3 ~v~nLp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 69 (75)
T 1iqt_A 3 FVGGLSP---DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 69 (75)
T ss_dssp EESCCCS---SCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBC
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 3566653 113456788889999998887632 335667799999999987655555544
No 84
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.90 E-value=10 Score=24.80 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=43.8
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
|..--++||+..- -....+.++..+||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 4 ~~~~l~v~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 4 GSSGLYVGSLHFN---ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CCCEEEEESCCTT---CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcEEEEeCCCCC---CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 3344567888642 13456888889999998887743 235667799999999874 555666665
No 85
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=78.35 E-value=10 Score=23.99 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=40.5
Q ss_pred ccccccccCCCc---chHHHHHHHHhhCCeEEEEec-------CeeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 42 VFGNWLQVGDDL---NHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 42 ilGn~~~l~~~~---~~~~~~~~~~~yG~v~~~~~g-------~~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
++||++.-..+. ....+.+...+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|
T Consensus 5 ~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 5 VVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp EEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 467876422111 125678888999999998875 2345667799999999875 55555555
No 86
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=77.70 E-value=6.3 Score=27.25 Aligned_cols=59 Identities=15% Similarity=0.250 Sum_probs=40.7
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecC-------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ-------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~-------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||+..-. ....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 8 lfV~nLp~~~---te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 8 IFIKNLDKSI---DNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp EEEESCCTTC---CHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCCCC---CHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4678886321 3457888889999998877632 236677799999999865 554454443
No 87
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=77.69 E-value=5.4 Score=24.87 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=39.2
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
++||++. +-....+.++..+||++..+.+.. .-.|-..+++.++.++.-++..+.+|+
T Consensus 3 ~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 69 (75)
T 2mss_A 3 FVGGLSV---NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKM 69 (75)
T ss_dssp EEECCCS---SCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCC
T ss_pred EEecCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEE
Confidence 3567653 113456788889999998877632 234556799999999875555555554
No 88
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=77.43 E-value=8.1 Score=27.47 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=41.6
Q ss_pred CcccccccccCCC-cchHHHHHHHHhhCCeEEEEec------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDD-LNHRNLSDLAKKYGDVLLLRMG------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~-~~~~~~~~~~~~yG~v~~~~~g------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||+..-... .....+.++..+||+|..+.+. +.-.|...+++.+..++.. ++..+.+|+
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 3467888642211 1122456788999999888773 2456777899999999865 555666665
No 89
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=76.15 E-value=6.2 Score=27.70 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=44.8
Q ss_pred CCCCcccccccccC--CCcchHHHHHHHHhhCCeEEEEecCe-------------eEEEEcCHHHHHHHHHh-cCcccCC
Q 021610 37 PLPVPVFGNWLQVG--DDLNHRNLSDLAKKYGDVLLLRMGQR-------------NLVVVSSPDHAKEVLHT-QGVEFGS 100 (310)
Q Consensus 37 P~~~pilGn~~~l~--~~~~~~~~~~~~~~yG~v~~~~~g~~-------------~~vvi~~pe~i~evl~~-~~~~f~~ 100 (310)
|...-+|.|+..-. .+....-+.+.+.+||+|..+++... -.|--.+++.++.++.. ++..|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 55677789986531 12234567778889999998876422 23445599999888765 6767777
Q ss_pred CC
Q 021610 101 RT 102 (310)
Q Consensus 101 R~ 102 (310)
|+
T Consensus 99 R~ 100 (118)
T 3ue2_A 99 RK 100 (118)
T ss_dssp EE
T ss_pred cE
Confidence 75
No 90
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=75.49 E-value=6.7 Score=26.35 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=40.5
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||++.-. ....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 22 lfV~nLp~~~---te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 22 LIVNYLPQNM---TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp EEEESCCTTC---CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCCC---CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4678886421 3456888889999998887632 124667799999999865 555555543
No 91
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=74.64 E-value=15 Score=24.77 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=43.7
Q ss_pred CCcccccccccCCCc---chHHHHHHHHhhCCeEEEEec-------CeeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 39 PVPVFGNWLQVGDDL---NHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 39 ~~pilGn~~~l~~~~---~~~~~~~~~~~yG~v~~~~~g-------~~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
.--++||++.-..+. ....+.+...+||+|..+++. +.-.|-..+++.++.++.. ++..+.+|
T Consensus 16 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 16 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp SEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 345689987532211 235678888999999998875 3446667799999999875 56566665
No 92
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.60 E-value=13 Score=25.36 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=41.9
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEec---CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||++. +-....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 13 l~V~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 13 ILAKNLPA---GTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEESCCT---TCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 45788763 21345688888999999988873 2446667799999998865 555666665
No 93
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=73.18 E-value=7.7 Score=24.96 Aligned_cols=62 Identities=15% Similarity=0.226 Sum_probs=41.2
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCC
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSR 101 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R 101 (310)
|..--++||++.-. ....+.++..+||+|..+.+-. .-.|-..+++.++.++..++..+.+|
T Consensus 10 ~~~~l~V~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~ 80 (87)
T 3s7r_A 10 DAGKMFVGGLSWDT---SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGR 80 (87)
T ss_dssp CTTEEEEECCCTTC---CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTE
T ss_pred CCCEEEEeCCCCCC---CHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCE
Confidence 33445678886321 3456788889999998877631 23556679999999986655444443
No 94
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=73.14 E-value=18 Score=24.18 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=40.6
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEec---------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||+..-. ....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 26 l~V~nlp~~~---t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 26 LFVTGVHEEA---TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp EEEECCCTTC---CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCCCC---CHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 4578886421 345678888999999888763 2235567799999999874 555555554
No 95
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.31 E-value=14 Score=24.10 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=42.4
Q ss_pred CCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEec------C---eeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 35 PGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG------Q---RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 35 pgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g------~---~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
|.|..--++||++.-. ....+.++..+||+|..+.+. . .-.|-..+++.++.++.. ++..+.+|
T Consensus 12 ~~~~~~l~v~nlp~~~---t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYT---TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CCGGGCEEEESCCSSC---CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEECCCCCC---CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3344455678886421 345688888999999888763 1 235566799999999875 44444444
No 96
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=71.84 E-value=16 Score=23.17 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=42.0
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
|..--++||++.-. ....+.++..+||++..+.+.. .-.|-..+++.++.++.. ++..+.+|
T Consensus 6 ~~~~l~V~nl~~~~---~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 6 TKRVLYVGGLAEEV---DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp CSSEEEEECCCTTC---CHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCC---CHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 44455788886321 3456788889999999887622 235667799999999854 55444444
No 97
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=71.76 E-value=19 Score=24.71 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=42.7
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEec--CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g--~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||+..-. ....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|.
T Consensus 19 l~V~nLp~~~---t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 19 VVVSGLPPSG---SWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp EEEEECCSSC---CTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred EEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3578886422 244678888999999988874 4566777899999999874 565666665
No 98
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=71.37 E-value=16 Score=24.01 Aligned_cols=61 Identities=10% Similarity=0.193 Sum_probs=43.4
Q ss_pred CCcccccccc-cCCCcchHHHHHHHHhhCCeEEEEec-CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQ-VGDDLNHRNLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~-l~~~~~~~~~~~~~~~yG~v~~~~~g-~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||++. -. ....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 11 ~~l~V~nlp~~~~---t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 11 SRLFIGNLPLKNV---SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp EEEEEESSTTSCC---CHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred CEEEEeCCCcccC---CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 3446788863 21 345678888999999988874 3456667799999999875 555565655
No 99
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=71.36 E-value=18 Score=23.38 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=41.2
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEec-------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g-------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||++.- -....+.++..+||+|..+.+- +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 10 ~l~V~nlp~~---~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 10 QIFVRNLPFD---FTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp EEEECSCCTT---CCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3467888632 1345688888999999887763 2335566799999999875 555565554
No 100
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=71.25 E-value=16 Score=24.22 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=37.5
Q ss_pred CCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---eeEEEEcCHHHHHHHHHh
Q 021610 38 LPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---RNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 38 ~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---~~~vvi~~pe~i~evl~~ 93 (310)
..|-++||+..=. ....+.++..+||+|..+++.. .-.|-..+++.++.+...
T Consensus 7 ~~wL~VgNL~~~~---te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~ 62 (89)
T 2wbr_A 7 SSWLLLKNLTAQI---DGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMA 62 (89)
T ss_dssp CCEEEEECCCTTC---CCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred cceEEEeCCCccC---CHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHH
Confidence 4677889985321 2357899999999999988753 345556688777777653
No 101
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=70.27 E-value=15 Score=24.43 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=42.4
Q ss_pred CCcccccccccCCCc---chHHHHHHHHhhCCeEEEEec---------CeeEEEEcCHHHHHHHHHh-cCcccCC-CC
Q 021610 39 PVPVFGNWLQVGDDL---NHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGS-RT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~---~~~~~~~~~~~yG~v~~~~~g---------~~~~vvi~~pe~i~evl~~-~~~~f~~-R~ 102 (310)
..-++||++...... ....+.+...+||+|..+++. +.-.|-..+++.++.++.. ++..+.+ |+
T Consensus 7 ~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 7 QYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 345678887432211 234677888999999998874 2346677799999999864 5555554 44
No 102
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=70.02 E-value=7.2 Score=25.72 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=40.7
Q ss_pred CCcccccccccCC-CcchHHHHHHHHhhCCeEEEEec------CeeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 39 PVPVFGNWLQVGD-DLNHRNLSDLAKKYGDVLLLRMG------QRNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 39 ~~pilGn~~~l~~-~~~~~~~~~~~~~yG~v~~~~~g------~~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
.--++||++.-.. +.....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|
T Consensus 9 ~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 9 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 3456798864221 11112344888999999988764 3456777899999999875 55444443
No 103
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=69.30 E-value=9.8 Score=24.38 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=39.8
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
--++||+..- -....+.++..+||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|
T Consensus 8 ~l~v~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (87)
T 3bs9_A 8 HVFVGDLSPE---ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 76 (87)
T ss_dssp EEEEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3457888632 13456788889999998877632 235666799999999875 44444443
No 104
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=69.12 E-value=17 Score=24.54 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=40.3
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEec---------CeeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
-++||+..-. ....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|
T Consensus 29 l~V~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 29 LFVTSIHEEA---QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp EEEESCCTTC---CHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEeCCCCCC---CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 4578886421 345678888999999988874 2346667799999999874 55445444
No 105
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.33 E-value=23 Score=23.48 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=44.0
Q ss_pred CCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEec-------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 35 PGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 35 pgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g-------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
+-+..--++||+..-. ....+.++..+||+|..+.+- +.-.|-..+++.++.++.. ++..+.+++
T Consensus 12 ~~~~~~l~V~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGI---DDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CSSCCCEEEECCCTTC---CHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCEEEEeCCCCCC---CHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3344556789886421 245678888899999887764 1345667799999999874 555565554
No 106
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=68.15 E-value=13 Score=25.25 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=43.2
Q ss_pred CCCCcccccccccC--CCc-----chHHHHHHHHhhCCeEEEEecC-----------eeEEEEcCHHHHHHHHHh-cCcc
Q 021610 37 PLPVPVFGNWLQVG--DDL-----NHRNLSDLAKKYGDVLLLRMGQ-----------RNLVVVSSPDHAKEVLHT-QGVE 97 (310)
Q Consensus 37 P~~~pilGn~~~l~--~~~-----~~~~~~~~~~~yG~v~~~~~g~-----------~~~vvi~~pe~i~evl~~-~~~~ 97 (310)
|+..-+|-|+..-. .+. ....+.+...+||+|..+++.. .-.|--.+++.|+.++.. ++..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 44566778875431 111 1134666778999999998742 224556799999888765 6667
Q ss_pred cCCCC
Q 021610 98 FGSRT 102 (310)
Q Consensus 98 f~~R~ 102 (310)
|.+|+
T Consensus 84 f~GR~ 88 (105)
T 3v4m_A 84 FANRV 88 (105)
T ss_dssp ETTEE
T ss_pred eCCCE
Confidence 77775
No 107
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.00 E-value=23 Score=23.29 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=42.9
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
.--++||+..-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.-++..+.+|+
T Consensus 11 ~~l~V~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 80 (99)
T 2dgs_A 11 NKIFVGGIPHNC---GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 80 (99)
T ss_dssp CEEEEESCCSSC---CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE
Confidence 345678886421 3456788889999999887732 245667799999999976665666654
No 108
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=67.96 E-value=13 Score=23.51 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=38.9
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
++||++.- -....+.++..+||++..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 5 ~V~nlp~~---~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 5 FVGDLNVN---VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp EEECCCTT---CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45777531 12456788889999998877631 236667799999999875 555555443
No 109
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=67.92 E-value=29 Score=24.44 Aligned_cols=63 Identities=22% Similarity=0.238 Sum_probs=42.9
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
|..--++||+..-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 45 ~~~~l~V~nLp~~~---te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 45 PNCCLGVFGLSLYT---TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CSSCBCEETCTTSC---CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCEEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 33445678886421 3456888889999999888732 235667799999999875 555555554
No 110
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=67.78 E-value=23 Score=23.93 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=40.7
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||+..-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 29 l~V~nLp~~~---te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 29 LYVGSLHFNI---TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp EEEECCCSSC---CHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4578886421 3456788889999998877631 345667899999999864 555555554
No 111
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.70 E-value=23 Score=23.49 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=41.7
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEec-------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g-------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||+..-. ....+.++..+||+|..+.+- +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 16 ~~l~V~nlp~~~---t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 16 KRLHVSNIPFRF---RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CEEEEESCCTTC---CHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345678886321 345678888999999888774 2345667799999999875 554555544
No 112
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.08 E-value=22 Score=23.33 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=40.4
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---eeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
.--++||+ .. ....+.++..+||+|..+.++. .-.|-..+++.++.++.. ++..+.+|
T Consensus 16 ~~l~V~n~-~~----t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 16 NTLYVYGE-DM----TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp SEEEEECS-SC----CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CEEEEcCC-CC----CHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 34467883 22 3456888899999999998862 345667799999999865 44444444
No 113
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=66.84 E-value=24 Score=23.18 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=39.6
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEE--------EEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLL--------LRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~--------~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
--++||+..- -....+.++..+||.+.. +.+.. .-.|-..+++.++.++.. ++..+.+|
T Consensus 15 ~l~V~nLp~~---~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 15 TIFVQGLGEN---VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp EEEEECCCSS---CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred EEEEeCCCCC---CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4467888632 134567888899999876 55421 235666799999999864 55555555
Q ss_pred C
Q 021610 102 T 102 (310)
Q Consensus 102 ~ 102 (310)
+
T Consensus 92 ~ 92 (99)
T 2la6_A 92 P 92 (99)
T ss_dssp B
T ss_pred E
Confidence 4
No 114
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=66.45 E-value=11 Score=25.94 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=42.5
Q ss_pred CcccccccccCCCcchHHHHHHHHhhC-CeEEEEec-----CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYG-DVLLLRMG-----QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG-~v~~~~~g-----~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||+..- -....+.++..+|| .|..+.+. +.-.|-..+++.++.++.+ ++..+.+|+
T Consensus 30 ~l~VgnLp~~---~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 30 RITMKNLPEG---CSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp EEEEECSSCC---CCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred EEEEECCCCC---CCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4467998642 13567888999999 78877773 3457777899999999865 555555554
No 115
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.08 E-value=21 Score=23.40 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=41.4
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC------------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ------------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~------------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 6 ~~l~V~nLp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 6 SGLFIKNLNFST---TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CCEEEESCCTTC---CHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 345678886321 3456788889999998877641 335666799999999985 555555543
No 116
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=65.72 E-value=16 Score=24.25 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=39.8
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEec----CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g----~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
++||++.- -....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+++
T Consensus 4 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 4 YVGNLGTG---AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp EEECCCSS---CSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 46777531 1345678888999999888774 2345666799999999874 454566655
No 117
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=65.58 E-value=25 Score=24.41 Aligned_cols=60 Identities=12% Similarity=0.233 Sum_probs=42.5
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEec---------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||+..-. ....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+++
T Consensus 24 ~l~V~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 24 ILFVTGVHEEA---TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp EEEEESCCTTC---CHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 34678886321 345678888999999988873 2346677899999999864 666666665
No 118
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=65.58 E-value=19 Score=22.93 Aligned_cols=59 Identities=17% Similarity=0.335 Sum_probs=40.0
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEec----------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g----------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||++.-. ....+.++..+||++..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 7 l~V~nlp~~~---t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 7 VHIGRLTRNV---TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp EEEECCCTTC---CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCCC---CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 3567775321 345678888999999887762 2345667799999999875 555555543
No 119
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.46 E-value=24 Score=22.67 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=43.3
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC-eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ-RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~-~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
+..--++||++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 8 ~~~~l~V~nlp~~~---t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 72 (90)
T 2dnp_A 8 NTWKIFVGNVSAAC---TSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKR 72 (90)
T ss_dssp CSCCEEEESCCTTC---CHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCC---CHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 33455689886421 3456788889999999888753 445567799999999874 554555543
No 120
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.25 E-value=27 Score=23.07 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=42.8
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
|..--++||++.- -....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 11 ~~~~l~v~nLp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 11 DEGKLFVGGLSFD---TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CCSEEEEESCCTT---CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCEEEEECCCCC---CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3345567888632 13456788889999998887743 234556799999999854 555566655
No 121
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.91 E-value=27 Score=22.98 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=41.7
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC--------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~--------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 18 ~~l~v~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 18 HKLFISGLPFSC---TKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp SCEEEESCCTTC---CHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345678886421 3456788889999998877632 345667799999999865 555555543
No 122
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=64.72 E-value=26 Score=23.11 Aligned_cols=60 Identities=10% Similarity=0.232 Sum_probs=40.2
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEec-CeeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g-~~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
--++||+.. ++-....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|
T Consensus 24 ~l~V~nLp~--~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 24 RLFIGNLPL--KNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp EEEEESCCS--SCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred EEEEeCCCc--ccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 345788863 011245678888999999998874 3455667799999999874 44344343
No 123
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=64.71 E-value=17 Score=26.89 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=40.3
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEec---------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||++.- -....+.++..+||+|..+.+. +.-+|-..+++.++.++.. ++..+.+++
T Consensus 75 l~V~nLp~~---~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 75 LFVTSIHEE---AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp EEEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCC---CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 457888642 1345688888999999887763 2345667799999999864 554454443
No 124
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=64.65 E-value=17 Score=24.84 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=41.6
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||+..-. ....+.+...+||+|..+++.. .-.|...+++.++.++.. ++..+.+|+
T Consensus 7 ~~lfV~nL~~~~---te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 7 KEVTFARLNDNV---RETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp CEEEEESCCTTC---CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cEEEEECCCCCC---CHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 345678886321 3456888889999999887631 236777899999999875 554444443
No 125
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.54 E-value=25 Score=22.58 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=42.9
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEec-CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g-~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
|..--++||++.-. ....+.++..+||+|..+.+- +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 7 ~~~~l~V~nlp~~~---t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 7 GMVKLFIGNLPREA---TEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp CCEEEEEESCCSSC---CHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCeEEEEeCCCCCC---CHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 33445678886421 345688888999999988874 3445667799999999854 444555554
No 126
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.48 E-value=24 Score=23.17 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=41.8
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||++.-. ....+.++..+||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 9 ~~l~V~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 9 GRLFVRNLSYTS---SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp EEEEEECCCTTC---CHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 445678886421 3456888889999999888732 345667799999999854 444555544
No 127
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.96 E-value=19 Score=23.35 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=40.3
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGS 100 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~ 100 (310)
.--++||++.- -....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+
T Consensus 17 ~~l~V~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 17 STVYVSNLPFS---LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp TSEEEESCCTT---SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CEEEEECCCCC---CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 34567888632 13456788889999999888732 346667899999999864 4433333
No 128
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=63.66 E-value=8.3 Score=26.11 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=34.6
Q ss_pred HHHHHHHHhhCCeEEEEecCe-eEEEEcCHHHHHHHHHh--cCcccCCCC
Q 021610 56 RNLSDLAKKYGDVLLLRMGQR-NLVVVSSPDHAKEVLHT--QGVEFGSRT 102 (310)
Q Consensus 56 ~~~~~~~~~yG~v~~~~~g~~-~~vvi~~pe~i~evl~~--~~~~f~~R~ 102 (310)
.-+.++...||.+.--|+... -.+++++|+.|++++.. ....|.-|+
T Consensus 20 ~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~t 69 (101)
T 3ctr_A 20 SDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQT 69 (101)
T ss_dssp HHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCCC
T ss_pred HHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEE
Confidence 457788899998888888754 46678899999999984 233444443
No 129
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.55 E-value=16 Score=24.39 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=41.8
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
.--++||+..-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++..++..+.+|+
T Consensus 17 ~~l~V~nlp~~~---t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (105)
T 2dh8_A 17 GKLFVGGLDWST---TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN 86 (105)
T ss_dssp SEECCBSCCTTC---CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 345678886321 3456788889999998877632 235667799999999987555555543
No 130
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.50 E-value=25 Score=23.06 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=43.6
Q ss_pred CCCCCCcccccccccCCCcchHHHHHHHHhhCCeE-EEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 35 PGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVL-LLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 35 pgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~-~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
+.|..--++||++.-. ....+.++..+||++. .+++.. .-.|-..+++.++.++.. ++..+.+|.
T Consensus 6 ~~~~~~l~V~nLp~~~---t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 6 SGMAASLWMGDLEPYM---DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CSSSSEEEECSCCTTC---CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCccEEEEeCCCCCC---CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 3444556789986421 3456788889999988 776632 235556799999999874 555566654
No 131
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.43 E-value=22 Score=23.80 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=41.9
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEE-EEec--------CeeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLL-LRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~-~~~g--------~~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
--++||++.-. ....+.++..+||.+.. +.+. +.-.|-..+++.++.++..++..+.+|+
T Consensus 17 ~l~V~nLp~~~---te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 17 FVRLRGLPFGC---SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp EEEEESCCTTC---CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 34678886421 34567888899998765 5442 2356777899999999988666666665
No 132
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.38 E-value=32 Score=23.39 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=43.2
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEec---CeeEEEEcCHHHHHHHHHh-c--CcccCCCC
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT-Q--GVEFGSRT 102 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---~~~~vvi~~pe~i~evl~~-~--~~~f~~R~ 102 (310)
|..--++||+..=. ....+.++..+||.|..+++. +.-.|-..+++.++.++.. + +..+.+|+
T Consensus 15 ~~~~LfV~nLp~~v---te~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 15 PSRVIHIRKLPIDV---TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCEEEECSCCTTS---CHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCEEEEeCCCCCC---CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 44455689987421 245688889999999988874 3457777899999998873 2 23444554
No 133
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=63.32 E-value=39 Score=24.28 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=42.5
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEec----CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g----~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||++.-. ....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 75 ~l~V~nl~~~~---t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 75 KVYVGNLGNNG---NKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp EEEEESCCSCC---SCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 44678886422 235678888999999988874 3446667799999999874 565566665
No 134
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.08 E-value=16 Score=24.04 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=40.3
Q ss_pred CcccccccccCC-CcchHHHHHHHHhhCCeEEEEec------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGD-DLNHRNLSDLAKKYGDVLLLRMG------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~-~~~~~~~~~~~~~yG~v~~~~~g------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||++.-.. +.....+.++..+||+|..+++. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 346788864221 11112233888999999998874 2345667799999999874 554555544
No 135
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=62.93 E-value=23 Score=23.14 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=39.8
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEec---------CeeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
--++||+..- -....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|
T Consensus 4 ~l~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 72 (96)
T 2x1f_A 4 VVYLGSIPYD---QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR 72 (96)
T ss_dssp EEEEESCCTT---CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEECCCCC---CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3457887532 1345678888999999988873 2345667799999999864 44444443
No 136
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=62.86 E-value=43 Score=24.94 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=38.1
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEec-----CeeEEEEcCHHHHHHHHHh-cCccc
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-----QRNLVVVSSPDHAKEVLHT-QGVEF 98 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g-----~~~~vvi~~pe~i~evl~~-~~~~f 98 (310)
++||+..= -....+.+...+||.|-.+++. +.-.|-..|++.+++++.. ++..+
T Consensus 50 ~VgNL~~~---vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 50 IVENLFYP---VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp EECSCCSC---CCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred EEeCcCCC---CCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 47888531 1245688888999999888773 2346667799999988875 45444
No 137
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=62.64 E-value=15 Score=25.45 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=38.8
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
++||+.. +-....+.++..+||+|..+.+.. .-.|-..+++.++.++.-++..+.+|+
T Consensus 40 ~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 106 (124)
T 2jwn_A 40 YVGNVDY---GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRT 106 (124)
T ss_dssp EEEEECT---TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 4677753 112456788889999998877632 235667799999999943555555543
No 138
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=62.55 E-value=31 Score=22.93 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=42.3
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecCe----------eEEEEcCHHHHHHHHHh--cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQR----------NLVVVSSPDHAKEVLHT--QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~----------~~vvi~~pe~i~evl~~--~~~~f~~R~ 102 (310)
--++||++.-. ....+.++..+||+|..+.+-.. -.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 17 KILVRNIPFQA---NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CEEEESCCTTC---CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred EEEEeCCCCcC---CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 44678886421 34568888899999998887433 35566799999999875 455666654
No 139
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.27 E-value=16 Score=23.18 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=40.3
Q ss_pred CCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCC
Q 021610 36 GPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGS 100 (310)
Q Consensus 36 gP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~ 100 (310)
.|..--++||++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+
T Consensus 3 ~~~~~l~v~nlp~~~---t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGT---TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCCEEEEESCCTTC---CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCCcEEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 344455678886321 2456777788999999887632 235667799999998864 3333433
No 140
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=61.95 E-value=21 Score=23.12 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=36.1
Q ss_pred CCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEec----CeeEEEEcCHHHHHHH
Q 021610 35 PGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEV 90 (310)
Q Consensus 35 pgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g----~~~~vvi~~pe~i~ev 90 (310)
+-|...-++||+..=. ....+.+...+||+|..+++. +.-.|-..+++.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~---te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDM---TAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp ---CCEEEEESCCTTC---CHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCCCCEEEEeCCCCCC---CHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 3344455679986421 245688888999999998875 3456777899988853
No 141
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.22 E-value=20 Score=23.84 Aligned_cols=65 Identities=12% Similarity=0.197 Sum_probs=42.6
Q ss_pred CCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC----------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 34 PPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ----------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 34 ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~----------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
|+.|..--++||+..-. ....+.++..+|| |..+.+-. .-.|-..+++.++.++.-++..+.+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~---t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 85 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDV---TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKR 85 (104)
T ss_dssp CSSSCEEEEEESCCSSC---CHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEE
T ss_pred CCCCCCEEEEeCCCCcC---CHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcE
Confidence 33344445678886321 2456788889999 88888631 235667899999999944555555544
No 142
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.97 E-value=32 Score=22.48 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=41.4
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---eeEEEEcCHHHHHHHHHh-cCcccC
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---RNLVVVSSPDHAKEVLHT-QGVEFG 99 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---~~~vvi~~pe~i~evl~~-~~~~f~ 99 (310)
|..--++||++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.
T Consensus 16 ~~~~l~V~nlp~~~---t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 16 PTTRLWVGGLGPNT---SLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCSCEEEECCCSSC---CHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCEEEEeCCCCCC---CHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 33445678886421 2456788889999999888753 345666799999999874 554554
No 143
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=60.94 E-value=23 Score=23.69 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=39.8
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEec--------CeeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g--------~~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
--++||+..-. ....+.++..+||+|..+.+- +.-.|-..+++.++.++.. ++..+.+|
T Consensus 31 ~l~V~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 31 KLLVSNLDFGV---SDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp EEEEESCCTTC---CHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 34578875321 345678888999999887764 1235567799999999875 55555444
No 144
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.91 E-value=33 Score=22.71 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=42.5
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||+..-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 17 TVYVGGLDEKV---SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp EEEEECCCTTC---CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 34678886421 3456888889999999888743 235667899999999985 555565554
No 145
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=60.83 E-value=19 Score=25.04 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=40.3
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEec---CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||+ +. ....+.++..+||+|..+.++ +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 41 ~lfVgnl-~~----te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 41 TLYVYGE-DM----TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp EEEEECS-SC----CHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEEcCC-CC----CHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3457883 21 345688888999999888876 3445666799999999865 555555554
No 146
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.69 E-value=35 Score=22.90 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=40.8
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEec--CeeEEEEcCHHHHHHHHHh-cCcccCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--QRNLVVVSSPDHAKEVLHT-QGVEFGS 100 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g--~~~~vvi~~pe~i~evl~~-~~~~f~~ 100 (310)
-++||+..- -....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+
T Consensus 18 l~V~nLp~~---~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 18 VVVSGLPPS---GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp EEEESCCSS---CCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 357888632 1356788889999999988774 4567777899999999875 4444444
No 147
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.39 E-value=32 Score=22.72 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=41.6
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC-------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ-------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~-------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 16 ~~l~V~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 16 RTLYVGNLSRDV---TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CEEEEESCCTTC---CHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEEEeCCCccC---CHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 345678886421 3456788889999998887643 345667799999999873 444454443
No 148
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=60.22 E-value=16 Score=23.40 Aligned_cols=58 Identities=16% Similarity=0.083 Sum_probs=38.6
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
++||++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.-++..+.+|+
T Consensus 10 ~V~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~ 76 (89)
T 3ucg_A 10 YVGNVDYGA---TAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 76 (89)
T ss_dssp EEESCCTTC---CHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEE
T ss_pred EEeCCCCCC---CHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcE
Confidence 467775321 3456788889999998877632 235667799999998844555555543
No 149
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.48 E-value=35 Score=22.54 Aligned_cols=65 Identities=20% Similarity=0.184 Sum_probs=43.8
Q ss_pred CCCCCCcccccccccCCCcchHHHHHHHHh-hCCeEEEEec--------CeeEEEEcCHHHHHHHHHh-cCcc-cCCCC
Q 021610 35 PGPLPVPVFGNWLQVGDDLNHRNLSDLAKK-YGDVLLLRMG--------QRNLVVVSSPDHAKEVLHT-QGVE-FGSRT 102 (310)
Q Consensus 35 pgP~~~pilGn~~~l~~~~~~~~~~~~~~~-yG~v~~~~~g--------~~~~vvi~~pe~i~evl~~-~~~~-f~~R~ 102 (310)
+.|..--++||+..-. ....+.++..+ ||.|..+.+- +.-.|-..+++.++.++.. ++.. +.+|+
T Consensus 6 ~~~~~~l~V~nLp~~~---t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDV---DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp SSCCCCEEEECCCTTC---CHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCcEEEEeCCCCCC---CHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 3444555789986421 24567888888 9999887763 1345667799999999874 4444 55655
No 150
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=59.46 E-value=22 Score=23.10 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=40.8
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC--------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~--------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||++.-. ....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 18 ~l~v~nlp~~~---~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 18 TVFVGNLEARV---REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp EEEEECCCTTC---CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCCCC---CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 44678886321 3456888889999998887742 235667799999999874 554454443
No 151
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=59.04 E-value=38 Score=24.52 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=42.7
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCe---------eEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQR---------NLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~---------~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||++.- -....+.++..+||+|..+.+... -.|-..+++.++.++.. ++..+.+|+
T Consensus 71 ~~l~v~nl~~~---~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 71 TSLKVDNLTYR---TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp CEEEEESCCTT---CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34467887532 134567888899999998887432 36667899999999975 555566654
No 152
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=59.01 E-value=13 Score=23.12 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=37.3
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
++||++.-. ....+.+...+||++..+.+.. .-.|-..+++.++.++......+.+|+
T Consensus 4 ~v~nlp~~~---t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 70 (77)
T 1uaw_A 4 FIGGLSWQT---TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 70 (77)
T ss_dssp EEESCCSSC---CSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCC
T ss_pred EEeCCCCCC---CHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEE
Confidence 467775321 2456788889999987776632 224445689999999876544455554
No 153
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=58.64 E-value=26 Score=24.95 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=40.8
Q ss_pred CCCCCCCCc--ccccccccCCCcchHHHHHHHHhhCCeEEEEecC-----eeEEEEcCHHHHHHHHHh-cCcccC
Q 021610 33 LPPGPLPVP--VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ-----RNLVVVSSPDHAKEVLHT-QGVEFG 99 (310)
Q Consensus 33 ~ppgP~~~p--ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~-----~~~vvi~~pe~i~evl~~-~~~~f~ 99 (310)
++++|.+.. ++||+..- - ....+.+...+||.|-.+.+.. +-.|...+++.++.++.. ++..+-
T Consensus 21 ~~~~ps~VL~I~V~NL~~~-v--te~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~ 92 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYP-V--TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 92 (130)
T ss_dssp ----CCSEEEEEEESCCSC-C--CHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEE
T ss_pred ccCCCCceEEEEECCCCCC-C--CHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeec
Confidence 456666543 47998531 1 2456888899999998887643 256677799888888764 444443
No 154
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.54 E-value=9.5 Score=26.07 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=41.7
Q ss_pred CCcccccccccCCCcchHHHH---HHHHhhCCeEEEEecC------------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLS---DLAKKYGDVLLLRMGQ------------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~---~~~~~yG~v~~~~~g~------------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||++.-. ....+. ++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 16 ~~l~V~nLp~~~---~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 16 NLVFVVGLSQRL---ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp SCEEEEEECTTT---CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEEEECCCCCC---CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 445688886422 234455 7778999998877642 335566799999999986 666666654
No 155
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=58.07 E-value=21 Score=24.20 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=41.2
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSR 101 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R 101 (310)
.--++||+..- -....+.++..+||+|..+.+.. .-.|-..+++.++.++...+..+.+|
T Consensus 26 ~~lfV~nLp~~---~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~ 94 (109)
T 2rs2_A 26 CKMFIGGLSWQ---TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK 94 (109)
T ss_dssp CCEEEESCCTT---CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTE
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCE
Confidence 34567888531 12456788889999998888732 34677789999999997654444444
No 156
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.66 E-value=31 Score=22.82 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=42.3
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||+..-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 15 ~l~V~nLp~~~---t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 15 TLKVDNLTYRT---SPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp EEEEESCCTTC---CHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 44678886421 3456788889999999888742 346667799999999874 555566654
No 157
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.38 E-value=34 Score=23.05 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=40.6
Q ss_pred CCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---eeEEEEcCHHHHHHHHHh
Q 021610 35 PGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---RNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 35 pgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---~~~vvi~~pe~i~evl~~ 93 (310)
+.|..--++||++.- +-....+.++..+||.|..+++.. .-.|-..+++.+..++..
T Consensus 12 ~~p~~~l~V~nLp~~--~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~ 71 (102)
T 1x4d_A 12 VETRRVVHIMDFQRG--KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 71 (102)
T ss_dssp CCCCCEEEEESCCCS--SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCC--cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 445556678999740 112356788889999999988753 356777799999988764
No 158
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.86 E-value=15 Score=25.09 Aligned_cols=69 Identities=23% Similarity=0.249 Sum_probs=44.3
Q ss_pred CCCCCCCcccccccccCC---Cc-----chHHHHHHHHhhCCeEEEEec-----CeeEEEEcCHHHHHHHHHh-cCcccC
Q 021610 34 PPGPLPVPVFGNWLQVGD---DL-----NHRNLSDLAKKYGDVLLLRMG-----QRNLVVVSSPDHAKEVLHT-QGVEFG 99 (310)
Q Consensus 34 ppgP~~~pilGn~~~l~~---~~-----~~~~~~~~~~~yG~v~~~~~g-----~~~~vvi~~pe~i~evl~~-~~~~f~ 99 (310)
-|.|....++.|+..-.. +. ....+.+...+||+|..+.+. +.-.|-..+++.++.++.. ++..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 355666777889854321 10 123567778899999887763 2345556699999998865 555555
Q ss_pred CCC
Q 021610 100 SRT 102 (310)
Q Consensus 100 ~R~ 102 (310)
+|+
T Consensus 91 gr~ 93 (112)
T 2dit_A 91 GRQ 93 (112)
T ss_dssp TEE
T ss_pred CcE
Confidence 554
No 159
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.83 E-value=28 Score=22.44 Aligned_cols=61 Identities=18% Similarity=0.258 Sum_probs=41.7
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC-eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ-RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~-~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 11 ~~l~V~nLp~~~---t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 11 TKLHVGNISPTC---TNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp EEEEEESCCSSC---CHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 344678886421 3456888889999998888754 344556799999999864 555555543
No 160
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.80 E-value=30 Score=22.87 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=39.4
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||+..- -....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 10 ~l~V~nlp~~---~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 10 SVFVGNIPYE---ATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp CEEEESCCTT---SCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred EEEEeCCCCc---CCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 3467887631 13456788889999988776531 235556799999999864 444454443
No 161
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=56.13 E-value=40 Score=22.29 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=42.3
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC-eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ-RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~-~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||+..-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 12 ~~l~V~nl~~~~---t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 12 KVLFVRNLANTV---TEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCEEEECCCTTC---CHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 345678886421 3456788889999999988753 445567799999999875 554554443
No 162
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.11 E-value=43 Score=22.44 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=41.3
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEec---CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||+..-. ....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 27 ~l~V~nl~~~~---t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 27 TVYCGGIASGL---TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp EEEEECCSSCC---CHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 44678886421 245678888999999988874 3456667799999999864 554454443
No 163
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=56.01 E-value=45 Score=26.00 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=42.4
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEec----CeeEEEEcCHHHHHHHHH-hcCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEVLH-TQGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g----~~~~vvi~~pe~i~evl~-~~~~~f~~R~ 102 (310)
-++||+..- +-....+.++..+||+|..+.+- +.-.|-..+++.++.++. -++..+.+|+
T Consensus 37 l~V~nLp~~--~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 37 LLVSNLNPE--RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp EEEESCCTT--TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred EEEeCCCcc--cCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 457888630 11245678888999999988874 345677789999999986 4565666655
No 164
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=55.60 E-value=31 Score=23.22 Aligned_cols=38 Identities=18% Similarity=0.427 Sum_probs=31.0
Q ss_pred HHHHHHHHhhCCeEEEEecCe-eEEEEcCHHHHHHHHHh
Q 021610 56 RNLSDLAKKYGDVLLLRMGQR-NLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 56 ~~~~~~~~~yG~v~~~~~g~~-~~vvi~~pe~i~evl~~ 93 (310)
.-+.++...||.+.--|+... -.+++++|+.+++++..
T Consensus 30 ~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 30 SDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp HHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 457888899998888888754 46678899999999973
No 165
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=55.43 E-value=45 Score=22.79 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=43.4
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC--------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~--------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
+..--++||+..-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 6 ~~~~l~V~nLp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 6 HPGKLFIGGLNRET---NEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp SCCEEEEECCTTTC---CHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CCCEEEEeCCCCCC---CHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 33445678886421 3456788889999998877643 345667799999999875 555666655
No 166
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.41 E-value=13 Score=25.43 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=40.2
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
-++||+..- -....+.++..+||+|..+.+-. .-.|-..+++.++.++..++..+.+|+
T Consensus 30 l~V~nLp~~---~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 97 (116)
T 1x4b_A 30 LFIGGLSFE---TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV 97 (116)
T ss_dssp EEEECCTTC---CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEE
Confidence 457887532 13456788889999998877632 335566799999999977555555543
No 167
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.34 E-value=18 Score=24.59 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=38.1
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEec---------CeeEEEEcCHHHHHHHHHhcCcccCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvi~~pe~i~evl~~~~~~f~~R 101 (310)
++||+..- -....+.++..+||.|..+.+. +.-.|-..+++.++.++.-++..+.+|
T Consensus 29 ~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 94 (114)
T 2cq4_A 29 FCMQLAAR---IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGV 94 (114)
T ss_dssp EEESCCTT---CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTE
T ss_pred EEeCCCCC---CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCe
Confidence 56777531 1245678888999999988874 134566779999998884455444433
No 168
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=54.85 E-value=20 Score=27.45 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=39.9
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEec--------CeeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g--------~~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
++||++. +-....+.++..+||+|..+.+. +.-.|-..+++.++.++...+..+.+|+
T Consensus 113 ~V~nLp~---~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~ 178 (193)
T 2voo_A 113 YIKGFPT---DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 178 (193)
T ss_dssp EEECCCT---TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEE
T ss_pred EecCCCC---cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 5677753 22356788899999999887663 2345667799999999876544454443
No 169
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.79 E-value=37 Score=21.34 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=37.1
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---eeEEEEcCHHHHHHHHHh
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---RNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---~~~vvi~~pe~i~evl~~ 93 (310)
--++||++.- -....+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 14 ~l~V~~l~~~---~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 14 TLYVGGLGDT---ITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp CEEEECCTTT---SCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT
T ss_pred EEEEcCCCCC---CCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 4467888632 13456788889999999887743 445667799999999874
No 170
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=54.66 E-value=47 Score=23.35 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=40.0
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||+.. +-....+.++..+||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 45 l~V~nLp~---~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 45 LMVNYIPT---TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp EEEESCST---TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 35677753 112456788889999998877631 235667799999999875 555555554
No 171
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=54.63 E-value=27 Score=23.59 Aligned_cols=59 Identities=10% Similarity=0.217 Sum_probs=40.6
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEec-CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g-~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||+..- -....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 34 l~V~nLp~~---~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 34 LFVRPFPLD---VQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp EEECSSCTT---CCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEECCCCC---CCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 457887531 1245678888999999887764 4556667799999999875 555554443
No 172
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.61 E-value=29 Score=23.58 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=41.2
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
--++||+..-. ....+.++..+||+|..+++-. .-.|-..+++.++.++......+.+|+
T Consensus 19 ~l~V~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 87 (116)
T 2cqd_A 19 KIFVGGLPYHT---TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRK 87 (116)
T ss_dssp EEEEECCCSSC---CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEE
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEE
Confidence 44678886421 3456788889999999888743 235667799999999876433454443
No 173
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=54.39 E-value=44 Score=22.08 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=40.0
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC--------eeEEEEcCHHHHHHHHHh-cCcccCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFGS 100 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~--------~~~vvi~~pe~i~evl~~-~~~~f~~ 100 (310)
.--++||+..-. ....+.++..+||+|..+.+-. .-.|-..+++.++.++.. ++..+.+
T Consensus 16 ~~l~v~nLp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 16 RKLFVGMLNKQQ---SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CEEEEESCCTTC---CHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 445678886321 3456788889999998877642 235566799999999864 4444444
No 174
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.84 E-value=45 Score=21.72 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=38.4
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCe-EEEEec---CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDV-LLLRMG---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v-~~~~~g---~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||+..- -....+.++..+||+| ..+..+ +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 22 l~V~nL~~~---~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 22 VYVGNLPRD---ARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp EEEECCCTT---CCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEeCCCCc---CcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 457888531 1345678888999987 333333 3445667799999998865 555565554
No 175
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=52.62 E-value=34 Score=25.05 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=38.4
Q ss_pred ccccccccCCCcchHHHHHHHHhhC--CeEEEEec-----C----eeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYG--DVLLLRMG-----Q----RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG--~v~~~~~g-----~----~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
++||+.. +-....+.++..+|| .|..+++. + .-.|-..+++.++.++.. ++..+.+|
T Consensus 59 fVgnLp~---~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr 127 (156)
T 3n9u_C 59 YVGSFSW---WTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE 127 (156)
T ss_dssp EEECCCT---TCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE
T ss_pred EEeCCCC---CCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 4566642 112456888889999 88888762 1 246677899999999977 55444444
No 176
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=52.45 E-value=55 Score=24.83 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=39.9
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEec---------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||+.. +-....+.++..+||+|..+.+- +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 31 l~V~nLp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 31 VYVGSIYY---ELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp EEEECCCT---TCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred EEEECCCC---CCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 45677753 21345688888999999988773 2346667799999999874 444444443
No 177
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.61 E-value=19 Score=23.84 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=41.9
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
|..--++||++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 11 ~~~~l~V~nLp~~~---t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 11 TKRVLYVGGLAEEV---DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CCSCEEEESCCSSC---CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEeCCCCCC---CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 44455689886421 3456788889999998887732 234555699999999864 554554443
No 178
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.45 E-value=16 Score=24.84 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=39.8
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEec-------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g-------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||+..- -....+.++..+||+|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 31 ~l~V~nLp~~---~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 31 RLHVSNIPFR---FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp EEEEESCCTT---CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCCc---CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3457887532 1345678888999998887763 2345666799999998874 554454443
No 179
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.44 E-value=34 Score=22.20 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=39.3
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecC----eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ----RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~----~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
-++||+..-. ....+.++..+||+|..+.... .-.|-..+++.++.++.-++..+.+|+
T Consensus 11 l~V~nl~~~~---t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~ 73 (94)
T 2e5g_A 11 VFVSGFPRGV---DSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHR 73 (94)
T ss_dssp EEEECCCTTC---CHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEE
T ss_pred EEEECCCCCC---CHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEE
Confidence 4578886321 3456788889999998874322 234556799999999875555555543
No 180
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=51.28 E-value=44 Score=21.82 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=41.5
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||++.-. ....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~~---t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 17 RLFVGNLPPDI---TEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp EEEEESCCTTC---CHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred EEEEeCCCCCC---CHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 44678886421 3456788889999998888753 345556799999988855 555565554
No 181
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=51.26 E-value=35 Score=22.93 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=30.8
Q ss_pred HHHH-HhhCCeEEEEecC--------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 59 SDLA-KKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 59 ~~~~-~~yG~v~~~~~g~--------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.+.. .+||+|..+++.. .-.|--.+++.++.++.. ++..|.+|+
T Consensus 44 ~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 44 FTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp HHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred HHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 3444 8999999988752 234555699999888764 666666665
No 182
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=51.12 E-value=37 Score=22.30 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=38.8
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEec---CeeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---~~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
-++||+..- -....+.++..+||.|..+.+. +.-.|-..+.+.++.++.. ++..+.+|
T Consensus 30 l~V~nlp~~---~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 30 AYIGNIPHF---ATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp EEEESCCTT---CCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred EEEcCCCcc---cCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 457887531 1345678888999999888875 2345556699999888864 44444443
No 183
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=50.94 E-value=36 Score=23.05 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=40.0
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||+..-. ....+.++..+||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 27 ~l~V~nLp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 27 NLFIYHLPQEF---GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp CEEEESCCSSC---CHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34678886421 3456888889999988776632 235556799999999865 554454443
No 184
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.68 E-value=53 Score=21.91 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=40.6
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||+..-. ....+.++..+||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 24 ~l~V~nLp~~~---t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 24 RIYVGNLPPDI---RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp EEEEESCCTTC---CHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 34578886421 3456888899999998877632 236677899999999854 444454443
No 185
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.25 E-value=54 Score=21.91 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=34.8
Q ss_pred hHHHHHHHHhhCCeEEEEecC----eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 55 HRNLSDLAKKYGDVLLLRMGQ----RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 55 ~~~~~~~~~~yG~v~~~~~g~----~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
...+.++..+||+|..+.+.+ .-.|-..+++.++.++.. ...+.+|+
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~ 81 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN-EVGLVDNP 81 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT-CCBCSSSB
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh-cCCCCCCe
Confidence 467888999999999988742 346667799999999876 33344554
No 186
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=49.98 E-value=42 Score=21.14 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=39.5
Q ss_pred CcccccccccCCCcchHHHHHHHHhh----C-------CeEEEEec---CeeEEEEcCHHHHHHHHHhcCcccCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKY----G-------DVLLLRMG---QRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~y----G-------~v~~~~~g---~~~~vvi~~pe~i~evl~~~~~~f~~R 101 (310)
--++||+..-. ....+.++..+| | ++..+++. +.-.|-..+++.++.++.-++..+.+|
T Consensus 8 ~l~V~nLp~~~---t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 8 RLYVGNIPFGI---TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp EEEEESCCTTC---CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred EEEEeCCCCCC---CHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 34678886421 245677777888 8 89888875 344666779999999984455444444
No 187
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=49.97 E-value=50 Score=22.28 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=41.3
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||+..-. ....+.++..+||.|..+.+-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 16 ~~l~V~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 16 FHVFVGDLSPEI---TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp EEEEEESCCTTC---CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred cEEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345678886321 3456888889999998877632 235667799999999874 444454443
No 188
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=49.93 E-value=56 Score=21.96 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=39.6
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEec---CeeEEEEcCHHHHHHHHHh
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---~~~~vvi~~pe~i~evl~~ 93 (310)
|...-++||++.=. ....+.++..+||.|-.+.+. +.-.|-..+.+.++.++..
T Consensus 20 ps~~l~V~NLp~~~---te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 20 ASPVVHIRGLIDGV---VEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCSEEEEESCCTTC---CHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCC---CHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 44566789997421 245678889999999888764 4566777799999988764
No 189
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.32 E-value=32 Score=23.26 Aligned_cols=63 Identities=21% Similarity=0.364 Sum_probs=40.3
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCe----EEEEe--c---CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDV----LLLRM--G---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v----~~~~~--g---~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
|..--++||+..- -....+.++..+||.| ..+.. | +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 24 ~~~~l~V~nLp~~---~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 24 PNKVLYLKNLSPR---VTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CCSEEEEECCCTT---CCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCEEEEeCCCCC---CCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3345567988632 1345677888899987 44443 2 2345667799999999875 555555554
No 190
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.28 E-value=55 Score=21.74 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=40.4
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCC-eEEEEec----------CeeEEEEcCHHHHHHHHHh--cC-cccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGD-VLLLRMG----------QRNLVVVSSPDHAKEVLHT--QG-VEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~-v~~~~~g----------~~~~vvi~~pe~i~evl~~--~~-~~f~~R~ 102 (310)
--++||++. +-....+.++..+||+ |..+.+- +.-.|-..+++.++.++.. ++ ..+.+|+
T Consensus 10 ~l~V~nLp~---~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 10 RLFIGGIPK---MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp EEEEECCCT---TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred EEEEeCCCC---cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 346788863 1134567888899998 8888764 2345667799999999875 22 3455544
No 191
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.88 E-value=62 Score=22.50 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=42.3
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEec---CeeEEEEcCHHHHHHHHHh---cCcccCCCC
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT---QGVEFGSRT 102 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---~~~~vvi~~pe~i~evl~~---~~~~f~~R~ 102 (310)
|..--++||+..=. ....+.++..+||.|..+.+. +.-.|-..+.+.++.++.. .+..+.+|+
T Consensus 30 ps~~LfVgNLp~~v---te~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 30 PSRVIHIRKLPIDV---TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp CCSEEEEESCCTTC---CHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred CCCEEEEeCCCCCC---CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 33456789987421 245688899999999888764 3456667799999888763 123455555
No 192
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=48.76 E-value=30 Score=22.27 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=37.8
Q ss_pred ccccccccCCCcchHHHHHHHHhhC--CeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYG--DVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG--~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
++||+..-. ....+.++..+|| ++..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 5 ~V~nL~~~~---t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 5 YIGNLTWWT---TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp EEESCCTTC---CHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred EEeCCCCCC---CHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 467775321 3456788889999 887766522 235556799999999854 555666665
No 193
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=48.20 E-value=33 Score=22.72 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=42.1
Q ss_pred CCCCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 33 LPPGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 33 ~ppgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
.++.|..--++||+..-. ....+.++..+|| |..+++.. .-.|-..+++.++.++.-++..+.+|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~---t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 84 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNT---VQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRS 84 (103)
T ss_dssp CCSSSCEEEEEESCCTTC---CHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCCCCeEEEEeCCCCCC---CHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeE
Confidence 334444455689886421 2456788888997 88777631 235667799999999844555555543
No 194
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.01 E-value=61 Score=21.60 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=38.0
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEec---CeeEEEEcCHHHHHHHHH
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLH 92 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---~~~~vvi~~pe~i~evl~ 92 (310)
|..--++||+..-. ....+.++..+||.|..+.+. +.-.|-..+.+.++.++.
T Consensus 14 p~~~l~V~nLp~~~---te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 14 PSRVLHIRKLPGEV---TETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp CCSEEEEESCCTTC---CHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCC---CHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 33456789987411 245678888999999888774 345666779999988876
No 195
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=46.95 E-value=33 Score=24.81 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=40.3
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
-++||++. .-....+.+...+||+|..+.+.. .-.|-..+++.+..++..++..+.+|+
T Consensus 90 l~V~nlp~---~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 157 (167)
T 2cjk_A 90 IFVGGIGP---DVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK 157 (167)
T ss_dssp EEEEEECT---TCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSC
T ss_pred EEECCCCC---CCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeE
Confidence 45677753 213456788889999998877642 235566799999999975555555554
No 196
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.80 E-value=63 Score=21.67 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=38.5
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEec---CeeEEEEcCHHHHHHHHHh
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---~~~~vvi~~pe~i~evl~~ 93 (310)
|..--++||+.. +-....+.++..+||.|..+.+. +.-.|-..+.+.++.++..
T Consensus 14 p~~~l~V~nLp~---~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 14 VSPVVHVRGLCE---SVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp CCSEEEEESCCS---SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 334567899864 21345688899999999988874 2456667799999888763
No 197
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=46.29 E-value=41 Score=24.13 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=38.9
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEec--------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g--------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
++||++.- -....+.++..+||+|..+++- +.-.|-..+++.++.++.. ++..+.+++
T Consensus 4 ~V~nlp~~---~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (166)
T 3md3_A 4 YVGNLDKA---ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNI 70 (166)
T ss_dssp EEEEEETT---CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EECCCCCc---CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe
Confidence 46777531 1245678888999999888773 2345667799999999843 554454443
No 198
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=46.11 E-value=57 Score=21.81 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=40.5
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC-eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ-RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~-~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||+..-. -....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+++
T Consensus 29 ~l~V~nl~~~~--~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 29 RVFIGNLNTAL--VKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp EEEECSCCCSS--CCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCccc--CCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 34678886420 12456788889999998888742 334556699999998854 554555443
No 199
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.03 E-value=59 Score=22.32 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=43.1
Q ss_pred CCCCccccccccc-CCCcchHHHHHHHHhhCCeEEEEecC---eeEEEEcCHHHHHHHHHh---cCcccCCCC
Q 021610 37 PLPVPVFGNWLQV-GDDLNHRNLSDLAKKYGDVLLLRMGQ---RNLVVVSSPDHAKEVLHT---QGVEFGSRT 102 (310)
Q Consensus 37 P~~~pilGn~~~l-~~~~~~~~~~~~~~~yG~v~~~~~g~---~~~vvi~~pe~i~evl~~---~~~~f~~R~ 102 (310)
|..--++||+..= . ....+.++..+||.|..+++.. .-.|-..+++.++.++.. +...+.+|+
T Consensus 24 p~~~l~V~NLp~~~~---te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGY---SDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CCCEEEEESCCCSSC---CSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred CCCEEEEeCCCCccC---CHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 4455678998752 1 2346788889999999988863 346666799999888763 233456665
No 200
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=46.02 E-value=46 Score=23.52 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=41.2
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||+.. +-....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 50 l~V~nLp~---~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 50 LKVDNLTY---RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp EEEECCCS---SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 45788853 213456788889999998888743 246667799999999875 555555554
No 201
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=45.98 E-value=16 Score=24.29 Aligned_cols=58 Identities=10% Similarity=0.208 Sum_probs=39.0
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecC--------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~--------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
-++||+..-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++. ++..+.+++
T Consensus 12 l~V~nLp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~ 77 (102)
T 2xs2_A 12 VFVGGIDVRM---DETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKK 77 (102)
T ss_dssp EEEECCCTTC---CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEE
T ss_pred EEEeCCCCCC---CHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEE
Confidence 4578886321 2456788889999998877632 33566678999998887 544454443
No 202
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=45.71 E-value=31 Score=22.09 Aligned_cols=57 Identities=18% Similarity=0.325 Sum_probs=36.4
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
++||+..- -....+.++..+||+|..+.+.. .-.|-..+++ ++.++.. ++..+.+|+
T Consensus 5 ~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~ 71 (90)
T 2ki2_A 5 YVGNLVYS---ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRT 71 (90)
T ss_dssp EEEEECTT---SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSS
T ss_pred EECCCCCC---CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeE
Confidence 46777531 12345677778899998877642 2355667888 8888765 455555554
No 203
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=45.25 E-value=51 Score=23.79 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=42.0
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||+..- -....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+++
T Consensus 40 ~~l~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 110 (156)
T 1h2v_Z 40 CTLYVGNLSFY---TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI 110 (156)
T ss_dssp CEEEEESCCTT---CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567888632 13456888889999999888721 235667799999999975 555555544
No 204
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=45.06 E-value=63 Score=22.17 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=40.2
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecC--------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~--------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||+..- -....+.++..+||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 38 l~V~nlp~~---~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 38 LLVSNLDFG---VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp EEEESCCSS---CCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred EEEeCCCCC---CCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 356777532 12456788889999998877632 345667799999999874 555555554
No 205
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.93 E-value=67 Score=21.50 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=41.3
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC--------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~--------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||+..-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 16 ~~l~V~nlp~~~---~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 16 STVFVANLDYKV---GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp SCEEEESCCTTC---CHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 345678886421 3456888889999998777632 345667799999999874 554554443
No 206
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=44.89 E-value=37 Score=25.36 Aligned_cols=60 Identities=8% Similarity=0.103 Sum_probs=41.5
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSR 101 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R 101 (310)
.--++||++.-. ....+.++..+||+|..+++-. .-.|-..+++.++.++..++..+.+|
T Consensus 14 ~~l~V~nLp~~~---te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~ 82 (196)
T 1l3k_A 14 RKLFIGGLSFET---TDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGR 82 (196)
T ss_dssp GEEEEESCCTTC---CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTE
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCE
Confidence 345678886421 3456888899999998776521 34677789999999997655444444
No 207
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=44.86 E-value=51 Score=25.28 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=41.3
Q ss_pred CCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 37 PLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 37 P~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
|..--++||+.. +-....+.++..+||+|..+++-. .-.|-..+++.++.++.. ++..+.+|
T Consensus 14 p~~tlfVgnLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~ 85 (213)
T 4f02_A 14 PMASLYVGDLHP---DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 85 (213)
T ss_dssp -CCEEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCC---CCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc
Confidence 444457899863 113457888889999998877631 246677899999999865 44344443
No 208
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=44.33 E-value=53 Score=25.24 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=43.5
Q ss_pred CCccccccc-ccCCCcchHHHHHHHHhhCCeEEEEec----CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWL-QVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~-~l~~~~~~~~~~~~~~~yG~v~~~~~g----~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
..-++||+. .-. ....+.++..+||+|..+++- +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 5 ~~l~V~nL~~~~~---~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 71 (205)
T 3tyt_A 5 PVLMVYGLDQSKM---NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQK 71 (205)
T ss_dssp SEEEEECCCTTTC---CHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEeCCCcccC---CHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 345679986 311 245678888999999998874 3467778899999999864 555566654
No 209
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=44.05 E-value=67 Score=21.17 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=36.4
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~ 93 (310)
--++||+..- -....+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 15 ~l~V~nlp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 15 KLFIGQIPRN---LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 74 (106)
T ss_dssp EEEEESCCTT---CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4467888632 13456888889999998888743 235666799999999864
No 210
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.29 E-value=32 Score=22.33 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=40.0
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEE-EecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLL-RMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~-~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||++.-. ....+.++..+||+|..+ ++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 6 ~~l~V~nLp~~~---t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 6 SGIFIGNLDPEI---DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp CEEEEECCCTTC---CHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 345678886321 345678888999998766 5532 335667799999999874 444454443
No 211
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.88 E-value=63 Score=21.68 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=39.2
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC--------eeEEEEcCHHHHHHHHHh-cCcccCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHT-QGVEFGS 100 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~--------~~~vvi~~pe~i~evl~~-~~~~f~~ 100 (310)
--++||++.-. ....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+
T Consensus 27 ~l~V~nlp~~~---t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 27 NLYISNLPLSM---DEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp EEEEESCCTTC---CHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 44678886321 2456788888999998877632 245566799999999874 5545533
No 212
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.74 E-value=69 Score=20.98 Aligned_cols=59 Identities=12% Similarity=0.190 Sum_probs=39.4
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHhcCcccCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHTQGVEFGSR 101 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~~~~~f~~R 101 (310)
.--++||++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ...+.+|
T Consensus 16 ~~l~v~nlp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~ 83 (103)
T 2cqg_A 16 SDLIVLGLPWKT---TEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGR 83 (103)
T ss_dssp CCEEEESCCSSC---CHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTE
T ss_pred CEEEEEcCCCcC---CHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCe
Confidence 345678875321 3456888889999998877632 235566799999999873 3344444
No 213
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=42.65 E-value=39 Score=27.37 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=43.3
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEec-------CeeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG-------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g-------~~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
.--++||++.- -....+.++..+||+|..+++- +.-.|-..+++.++.++..++..+.+|+
T Consensus 42 ~~l~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 109 (292)
T 2ghp_A 42 TTVLVKNLPKS---YNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNE 109 (292)
T ss_dssp CEEEEEEECTT---CCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred CEEEEeCCCCC---CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcE
Confidence 45567888642 1345688888999999887763 2346667799999999966666666654
No 214
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=42.37 E-value=73 Score=23.79 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=39.0
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEec--------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG--------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g--------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
++||+.. .-....+.++..+||+|..+.+- +.-.|...+++.++.++.. ++..+.+++
T Consensus 92 ~V~nLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 92 LVSNLDF---GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp EEECCCS---CCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred EEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 4556542 11245678888999999888773 2346667899999999874 454555554
No 215
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=42.27 E-value=85 Score=21.86 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=35.4
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~ 93 (310)
-++||++.- -....+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 66 l~v~nlp~~---~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 66 LYVGGLAEE---VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp EEEECCCTT---CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCC---CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 356777531 12456788889999999988732 245667799999999864
No 216
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=41.15 E-value=42 Score=25.08 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=40.1
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecCe---------eEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQR---------NLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~---------~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
-++||++.- -....+.++..+||+|..+.+... -.|-..+++.+..++..++..+.+|+
T Consensus 107 l~V~nLp~~---~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~ 174 (196)
T 1l3k_A 107 IFVGGIKED---TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN 174 (196)
T ss_dssp EEEECCTTT---CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEE
T ss_pred EEEeCCCCC---CCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEE
Confidence 356777532 134567888899999988776421 35567799999999976655555543
No 217
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.96 E-value=70 Score=20.56 Aligned_cols=60 Identities=23% Similarity=0.174 Sum_probs=40.5
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEE-ecC-----eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLR-MGQ-----RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~-~g~-----~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||++.-. ....+.++..+||+|..+. +.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~~---t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 17 KLQIRNIPPHL---QWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp CEEEEEECSSS---CHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEEEcCCCCC---CHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34679986321 3456788889999998873 422 145667799999998864 555555554
No 218
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=39.77 E-value=52 Score=22.30 Aligned_cols=57 Identities=18% Similarity=0.327 Sum_probs=38.0
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
++||+..- -....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|
T Consensus 44 ~V~nlp~~---~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 44 FIYHLPQE---FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp EEECSCTT---CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred EEeCCCCC---CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 46777531 13456788889999999887742 235666799999999875 44344433
No 219
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=39.68 E-value=65 Score=22.63 Aligned_cols=60 Identities=10% Similarity=0.110 Sum_probs=40.3
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeE--EEEec--------CeeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVL--LLRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~--~~~~g--------~~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
..-++||++.-. ....+.++..+| .+. .+.+. +.-.|-..+++.++.++...+..+.+|+
T Consensus 43 ~~lfVgnLp~~~---te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~ 112 (126)
T 2hgm_A 43 GFVRLRGLPFGC---TKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 112 (126)
T ss_dssp CEEEEECCCTTC---CHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBC
T ss_pred CEEEEeCCCCCC---CHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEE
Confidence 344678886421 245678888889 566 66653 2357778899999999987655555554
No 220
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=39.63 E-value=60 Score=28.46 Aligned_cols=60 Identities=10% Similarity=0.090 Sum_probs=41.7
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEec---------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--+|||+..-. ....|.++..+||.|..+.+. +.-+|...+++.|..++.. ++..+.+++
T Consensus 104 ~lfV~nL~~~~---te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~ 173 (437)
T 3pgw_S 104 TLFVARVNYDT---TESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 173 (437)
T ss_pred EEEEeCCCCCC---CHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEE
Confidence 45678885321 245678888999999888763 2346667799999999865 555565554
No 221
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=39.47 E-value=53 Score=21.57 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=38.5
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEecC----------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ----------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~----------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
++||+..-. ....+.++..+|| |..+.+.. .-.|-..+++.++.++.-++..+.+|+
T Consensus 23 ~V~nLp~~~---t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 23 FLGNLPYDV---TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp EESCCSSCC---SSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred EEeCCCCCC---CHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 467775321 2345777888999 98888732 345667899999999954655565554
No 222
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.31 E-value=22 Score=24.30 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=40.5
Q ss_pred CCCCCCcccccccccCCCcchHHHHHHHHhhCCe-EEEEe-----c---CeeEEEEcCHHHHHHHHHhcCcccCCC
Q 021610 35 PGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDV-LLLRM-----G---QRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (310)
Q Consensus 35 pgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v-~~~~~-----g---~~~~vvi~~pe~i~evl~~~~~~f~~R 101 (310)
|.+..--++||++.-. ....+.++..+||.+ ..+.+ | +.-.|-..+++.++.++..++..+.+|
T Consensus 12 ~~~~~~l~V~nLp~~~---t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 84 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSI---TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 84 (114)
T ss_dssp CSCCCEEEEESCCTTS---CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTE
T ss_pred CCCccEEEEeCcCCcC---CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCe
Confidence 3344445678886421 245678888899988 33333 1 245667789999999987654444443
No 223
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.20 E-value=38 Score=22.60 Aligned_cols=60 Identities=5% Similarity=0.031 Sum_probs=39.8
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC--------eeEEEEcCHHHHHHHHHhcCcccCCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHTQGVEFGSRTR 103 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~--------~~~vvi~~pe~i~evl~~~~~~f~~R~~ 103 (310)
.-++||++.-. ....+.++..+||.+ .+.+.. .-.|-..+++.++.++..++..+.+|..
T Consensus 17 ~l~V~nLp~~~---te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (102)
T 1wez_A 17 CVHMRGLPYRA---TENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84 (102)
T ss_dssp EEEEESCCTTC---CHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCC
T ss_pred EEEEeCCCCCC---CHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 44678886421 245677888889955 655521 2456667999999999766666666753
No 224
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.88 E-value=59 Score=21.53 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=33.2
Q ss_pred HHHHHHHhhCCeEEEEec-CeeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 57 NLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 57 ~~~~~~~~yG~v~~~~~g-~~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
.+.+...+||.+..+++- .+-+|-..|.+.+..++.-++..+.+|.
T Consensus 31 ~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 31 ELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp HHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred HHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEeCCeE
Confidence 455666789999998874 4456666799999998876665555553
No 225
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.71 E-value=30 Score=22.90 Aligned_cols=60 Identities=10% Similarity=0.215 Sum_probs=40.1
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
.--++||+..-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++.. ++..+.+|
T Consensus 16 ~~l~V~nlp~~~---t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 16 ATIRVTNLSEDT---RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp EEEEEESCCTTC---CHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 344678886421 2456777888999998887642 235667799999999874 44444444
No 226
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=38.60 E-value=85 Score=20.81 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=37.8
Q ss_pred CCCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh
Q 021610 38 LPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 38 ~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~ 93 (310)
..--++||++.-. ....+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 15 ~~~l~V~nLp~~~---t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 15 GKTVFIRNLSFDS---EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CCCEEEESCCTTC---CHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEECCCCCC---CHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 3455688886421 3456788889999999888741 235666799999999875
No 227
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=38.53 E-value=63 Score=23.38 Aligned_cols=60 Identities=12% Similarity=0.281 Sum_probs=39.7
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecCe---------eEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQR---------NLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~---------~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
.--++||++.- -....+.+...+||++..+.+... -.|-..+++.++.++.. ++..+.+|
T Consensus 95 ~~l~v~nlp~~---~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (172)
T 2g4b_A 95 HKLFIGGLPNY---LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK 164 (172)
T ss_dssp TCEEEECCCTT---CCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTE
T ss_pred CEEEEEcCCCc---CCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCe
Confidence 34457887642 134567888899999988776322 34556699999988875 55455444
No 228
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.02 E-value=81 Score=20.44 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=41.9
Q ss_pred CCcccccccccCCCcchHHHHHHHHhh--CCeEEEEec-CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKY--GDVLLLRMG-QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~y--G~v~~~~~g-~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||+..-. ....+.++..+| |.|..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 16 ~~l~V~nLp~~~---t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 16 KILYVRNLMLST---SEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CEEEEESCCTTC---CHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345678886421 345688888999 889988874 3455667799999999873 554554443
No 229
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=36.16 E-value=76 Score=23.73 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=41.2
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEec----CeeEEEEcCHHHHHHHHH-hcCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEVLH-TQGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g----~~~~vvi~~pe~i~evl~-~~~~~f~~R~ 102 (310)
++||++.- +-....+.++..+||+|..+.+- +.-.|-..+++.++.++. -++..+.+|+
T Consensus 7 ~v~nlp~~--~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 7 LVSNLNPE--RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp EEECCCSS--SCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred EEeCCCcc--cCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 46777530 11245678888999999988874 345677789999999986 3565666665
No 230
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=35.36 E-value=1.2e+02 Score=24.16 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=29.3
Q ss_pred hHHHHHHHHhhCCeEEEEecC----eeEEEEcCHHHHHHHHHh
Q 021610 55 HRNLSDLAKKYGDVLLLRMGQ----RNLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 55 ~~~~~~~~~~yG~v~~~~~g~----~~~vvi~~pe~i~evl~~ 93 (310)
...+.++..+||+|..+.+.. .-.|-..+++.+..++..
T Consensus 221 ~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~ 263 (282)
T 3pgw_A 221 ELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDA 263 (282)
T ss_pred HHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHH
Confidence 456788889999998887732 345556799999988874
No 231
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=34.71 E-value=77 Score=22.63 Aligned_cols=57 Identities=14% Similarity=0.303 Sum_probs=38.8
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
++||++.- -....+.++..+||++..+.+-. .-.|-..+++.++.++.. ++..+.++
T Consensus 6 ~v~nlp~~---~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 72 (167)
T 1fxl_A 6 IVNYLPQN---MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK 72 (167)
T ss_dssp EEESCCTT---CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEcCCCCC---CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCc
Confidence 56777531 13456788889999998877632 245667899999999874 44444444
No 232
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=33.98 E-value=1e+02 Score=22.08 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=39.9
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
--++||++.- -....+.++..+||+|..+++-. .-.|-..+++.++.++.. ++..+.+|
T Consensus 5 ~l~v~nlp~~---~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 73 (168)
T 1b7f_A 5 NLIVNYLPQD---MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK 73 (168)
T ss_dssp EEEEECCCTT---CCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc
Confidence 3457887631 13456888889999998887632 345667799999999863 44444444
No 233
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.73 E-value=67 Score=22.38 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=38.2
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCe------EEEEe---c---CeeEEEEcCHHHHHHHHHhcCcccCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDV------LLLRM---G---QRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v------~~~~~---g---~~~~vvi~~pe~i~evl~~~~~~f~~R 101 (310)
..-++||++.-. ....+.++..+||+| +.+-. | +.-.|-..+++.++.++.+++..+.+|
T Consensus 24 ~~v~V~nLp~~~---te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR 95 (123)
T 2dha_A 24 VIVRMRGLPFTA---TAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 95 (123)
T ss_dssp CEEEECSCCTTC---CHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSC
T ss_pred CEEEEeCCCCCC---CHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCe
Confidence 345678886421 345688899999975 23321 2 134666779999999998755444444
No 234
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=31.44 E-value=56 Score=23.39 Aligned_cols=59 Identities=5% Similarity=0.044 Sum_probs=40.8
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC--------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~--------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
.-++||++.-. ....+.++..+|| +..+.+.. .-.|-..+++.++.++..++..+.+|+
T Consensus 48 ~lfV~nLp~~~---te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~ 114 (139)
T 2hgn_A 48 CVHMRGLPYKA---TENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRY 114 (139)
T ss_dssp CEECCSCCTTC---CHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCC
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEE
Confidence 34678886421 3456888889999 55776631 346777899999999965666666665
No 235
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=31.01 E-value=1.1e+02 Score=23.03 Aligned_cols=59 Identities=8% Similarity=0.260 Sum_probs=40.2
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecCe---------eEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQR---------NLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~---------~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||+.. +-....+.++..+||.|..+.+... -.|-..+++.+..++.. ++..+.+|+
T Consensus 128 l~v~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 196 (216)
T 2qfj_A 128 IYVASVHQ---DLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 196 (216)
T ss_dssp EEEECCCT---TCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB
T ss_pred EEEeCCCC---cCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcE
Confidence 35667653 1134567888899999988776422 25566799999999875 555666655
No 236
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.63 E-value=93 Score=21.30 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=37.6
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeE---EEEe---c---CeeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVL---LLRM---G---QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~---~~~~---g---~~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
--++||++.-. ....+.++..+||.|. .+.. | +.-.|-..+++.++.++..++..+.+|+
T Consensus 27 ~l~V~nLp~~~---te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 95 (124)
T 1wel_A 27 CVYLKGLPFEA---ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF 95 (124)
T ss_dssp EEEEECCCTTC---CHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 44678886321 2456778888999753 2321 1 2346667799999999985555555554
No 237
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=30.30 E-value=2.1e+02 Score=24.13 Aligned_cols=62 Identities=21% Similarity=0.131 Sum_probs=43.0
Q ss_pred CCCCCCCCcccccc-cccCCCcchHHHHHHHHhhCCeEEEEec---CeeEEEEcCHHHHHHHHHh-cCc
Q 021610 33 LPPGPLPVPVFGNW-LQVGDDLNHRNLSDLAKKYGDVLLLRMG---QRNLVVVSSPDHAKEVLHT-QGV 96 (310)
Q Consensus 33 ~ppgP~~~pilGn~-~~l~~~~~~~~~~~~~~~yG~v~~~~~g---~~~~vvi~~pe~i~evl~~-~~~ 96 (310)
.+..|..--++||+ +.... ....+.+...+||.|-.+.+. +.-.|-..+.+.++.++.. ++.
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~--te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGV--SRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTC--CHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred ecCCCCCEEEEEcCCCCCCC--CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34556667788996 33222 245788888999999998873 2345666799999999875 443
No 238
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.09 E-value=53 Score=22.05 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=39.5
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeE--------EEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVL--------LLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~--------~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
--++||+..-. ....+.++..+||.|. .+.+.. .-.|-..+++.++.++.. ++..+.+|
T Consensus 17 ~l~V~nLp~~~---t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 17 AIYVQGLNDSV---TLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp EEEEECCCTTC---CHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEcCCCCCC---CHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 34678886321 3456788889999986 344421 235667799999999875 55555554
Q ss_pred C
Q 021610 102 T 102 (310)
Q Consensus 102 ~ 102 (310)
+
T Consensus 94 ~ 94 (113)
T 2cpe_A 94 K 94 (113)
T ss_dssp E
T ss_pred E
Confidence 4
No 239
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=29.65 E-value=87 Score=25.05 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=41.2
Q ss_pred CCcccccccccCC-CcchHHHHHHHHhhCCeEEEEecC------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 39 PVPVFGNWLQVGD-DLNHRNLSDLAKKYGDVLLLRMGQ------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~-~~~~~~~~~~~~~yG~v~~~~~g~------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
.--++||+..-.. +.....+.++..+||+|..+++-. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 10 ~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 10 HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 4456899864221 111223668889999999887532 446667799999999854 554555554
No 240
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.52 E-value=1.3e+02 Score=20.97 Aligned_cols=56 Identities=16% Similarity=0.056 Sum_probs=37.9
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEec---C-eeEEEEcCHHHHHHHHHh-cCcccCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---Q-RNLVVVSSPDHAKEVLHT-QGVEFGS 100 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---~-~~~vvi~~pe~i~evl~~-~~~~f~~ 100 (310)
++||+..=. ....+.+...+||.|-.+++. + +-.|-..|++.|+.++.. ++..+-+
T Consensus 29 ~V~NL~~~v---t~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 29 SIQNPLYPI---TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EEESCCSCC---CHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EEcCcCCCC---CHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 368875311 245788899999999877653 2 356677798888888764 5554443
No 241
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.15 E-value=91 Score=19.85 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=38.2
Q ss_pred CCCcccccccccCCCcchHHHHHHHHhhCC-eEEEEe--cCeeEEEEcCHHHHHHHHHh-cC-cccCCCC
Q 021610 38 LPVPVFGNWLQVGDDLNHRNLSDLAKKYGD-VLLLRM--GQRNLVVVSSPDHAKEVLHT-QG-VEFGSRT 102 (310)
Q Consensus 38 ~~~pilGn~~~l~~~~~~~~~~~~~~~yG~-v~~~~~--g~~~~vvi~~pe~i~evl~~-~~-~~f~~R~ 102 (310)
..--++||+..-. ....+.++..+||+ +-...+ -+.-.|-..+++.++.++.. ++ ..+.+|+
T Consensus 8 ~~~l~V~nLp~~~---t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 74 (93)
T 2cqh_A 8 MNKLYIGNLSPAV---TADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKI 74 (93)
T ss_dssp CCCEEEECCCTTC---CHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred CcEEEEeCCCCCC---CHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEE
Confidence 3445678886421 34567888899998 333333 23445556799999998864 44 4454443
No 242
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.18 E-value=82 Score=21.02 Aligned_cols=46 Identities=26% Similarity=0.471 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCeEEEEec-CeeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 57 NLSDLAKKYGDVLLLRMG-QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 57 ~~~~~~~~yG~v~~~~~g-~~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
.+.+...+||.+..+++- .+-+|...|.+.+..++.-++..+.+|.
T Consensus 40 ~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 40 ELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp HHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred HHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 455666779998888864 4555666699999888876665555553
No 243
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=28.12 E-value=1.2e+02 Score=23.14 Aligned_cols=58 Identities=16% Similarity=0.295 Sum_probs=39.0
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecC-------eeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ-------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~-------~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
-++||+..- -....+.++..+||+|..+.+-. .-.|-..+++.++.++.. ++..+.+|
T Consensus 106 l~v~nl~~~---~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 106 IFIKNLDKS---IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp EEEESCCTT---CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ceECCcccc---cHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 356777532 13457888889999998877631 235666799999999875 54444444
No 244
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=27.90 E-value=1e+02 Score=24.17 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=38.2
Q ss_pred ccccccccCCCcchHHHHHHHHhhC--CeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYG--DVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSR 101 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG--~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R 101 (310)
++||+..-. ....+.++..+|| .|..+.+-. .-.|...+.+.++.++.. ++..+.+|
T Consensus 72 fVgnL~~~~---te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 72 YIGNLTWWT---TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp EEESCCTTC---CHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred EEeCCCCCC---CHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 567775321 2456888889999 898877632 236677799999999864 44444443
No 245
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=27.79 E-value=1.2e+02 Score=20.05 Aligned_cols=61 Identities=8% Similarity=-0.009 Sum_probs=39.7
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCC---eEEEEec--------CeeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGD---VLLLRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~---v~~~~~g--------~~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
..-++||+..-. ....+.++..+||. +..+.+. +.-.|-..+++.++.++..++..+.+|+
T Consensus 12 ~~l~V~nLp~~~---te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 12 FLIRAQGLPWSC---TMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CEEEEECCCSSC---CSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred cEEEEeCCCCCC---CHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 345678886422 23467778888876 6555552 1346677899999999986555555554
No 246
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=26.71 E-value=1.8e+02 Score=20.81 Aligned_cols=51 Identities=10% Similarity=0.181 Sum_probs=35.7
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecCe--------eEEEEcCHHHHHHHHHh
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQR--------NLVVVSSPDHAKEVLHT 93 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~--------~~vvi~~pe~i~evl~~ 93 (310)
--++||++. .-....+.+...+||+|..+.+... -.|-..+++.++.++..
T Consensus 97 ~l~v~nl~~---~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 97 KLFIGMISK---KCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred eEEEcCCCC---cCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 345677753 1134568888899999988776422 35667799999999865
No 247
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=26.38 E-value=1.7e+02 Score=20.68 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=38.7
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecCe---------eEEEEcCHHHHHHHHHh-cCcccCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQR---------NLVVVSSPDHAKEVLHT-QGVEFGS 100 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~---------~~vvi~~pe~i~evl~~-~~~~f~~ 100 (310)
--+++|++. .-....+.+...+||++..+.+... -.|-..+++.+..++.. ++..+.+
T Consensus 91 ~l~v~nl~~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 91 NLYVTNLPR---TITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp EEEEESCCT---TCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CEEEeCCCC---CCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 345677753 2134567888899999988776322 25556799999999874 4545544
No 248
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=26.31 E-value=46 Score=23.77 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=37.5
Q ss_pred cccccccccCCCcchHHHHHHHHhhCC---eEEEEec--------CeeEEEEcCHHHHHHHHHhcCcccCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGD---VLLLRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~---v~~~~~g--------~~~~vvi~~pe~i~evl~~~~~~f~~R 101 (310)
-++||+..-. ....+.++..+||. +..+++. +.-.|-..+++.++.++..++..+.+|
T Consensus 47 lfVgnLp~~~---te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr 115 (136)
T 2hgl_A 47 VKLRGLPWSC---SVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHR 115 (136)
T ss_dssp EEEESCCTTC---CHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSS
T ss_pred EEEeCCCCCC---CHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCE
Confidence 4578886421 24567888899998 4443332 134677789999999987555444444
No 249
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=26.28 E-value=1.2e+02 Score=21.40 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=39.7
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||++.-. ....+.+...+||++..+.+.. .-.|-..+++.+..++.. ++..+.+|+
T Consensus 89 ~l~v~nl~~~~---t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 89 NLFVGDLNVNV---DDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp EEEEESCCTTC---CHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred eEEECCCCCCC---CHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 34568875321 3456788889999998877631 135556799999999874 554554443
No 250
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.97 E-value=65 Score=20.37 Aligned_cols=48 Identities=17% Similarity=0.208 Sum_probs=33.7
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEec----CeeEEEEcCHHHHHHH
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG----QRNLVVVSSPDHAKEV 90 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g----~~~~vvi~~pe~i~ev 90 (310)
--++||++.-. ....+.++..+||+|..+.+. +.-.|-..+++.++.+
T Consensus 7 ~l~V~nLp~~~---te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 7 GVFVGRCTGDM---TEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp EEEEESCCSSS---CHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred EEEEeCCCCCC---CHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH
Confidence 34578886321 245678888999999988874 2456667799988764
No 251
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=25.95 E-value=1.5e+02 Score=21.29 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=37.7
Q ss_pred cccccccccCCCcchHHHHHHHHhh----C-------CeEEEEec---CeeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKY----G-------DVLLLRMG---QRNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~y----G-------~v~~~~~g---~~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
-++||++.-. ....+.++..+| | ++...+++ +.-.|-..+++.++.++.-++..+.+|+
T Consensus 7 l~V~nLp~~~---t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 79 (172)
T 2g4b_A 7 LYVGNIPFGI---TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (172)
T ss_dssp EEEESCCTTC---CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred EEEcCCCccc---CHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence 3567775321 234556666666 7 78888875 3446667799999999854555554443
No 252
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=24.69 E-value=34 Score=22.08 Aligned_cols=60 Identities=18% Similarity=0.098 Sum_probs=37.0
Q ss_pred CcccccccccCCCcchHHHHHHHHhhCCeEEEEec---------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 40 VPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMG---------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 40 ~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g---------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
--++||++.- -....+.++..+||.+..+.+. +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~---~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 17 VIKVQNMPFT---VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp EEEEECCCTT---CCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 3457888631 1345678888999976422211 1245666799999999874 555555543
No 253
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.44 E-value=1.7e+02 Score=19.99 Aligned_cols=58 Identities=19% Similarity=0.105 Sum_probs=40.2
Q ss_pred CCCCCccc--ccccccCCCcchHHHHHHHHhhCCeEEEEecC---eeEEEEcCHHHHHHHHHh-cCc
Q 021610 36 GPLPVPVF--GNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---RNLVVVSSPDHAKEVLHT-QGV 96 (310)
Q Consensus 36 gP~~~pil--Gn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---~~~vvi~~pe~i~evl~~-~~~ 96 (310)
.|..--++ ||+..=. ....+.+...+||.|-.+.+.. .-.|-..+++.+++++.. ++.
T Consensus 23 ~pt~~L~V~Ng~L~~~~---te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGV---SRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SCCSEEEEETCTGGGTC---CHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCCCC---CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34455678 6675311 2457888899999999888742 345666799999999875 443
No 254
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.91 E-value=1.4e+02 Score=18.76 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=38.5
Q ss_pred CCcccccccccCCCcchHHHHHHHHhhCCeEEEEecC--------eeEEEEcCHHHHHHHHHhcCcccCCCC
Q 021610 39 PVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ--------RNLVVVSSPDHAKEVLHTQGVEFGSRT 102 (310)
Q Consensus 39 ~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~--------~~~vvi~~pe~i~evl~~~~~~f~~R~ 102 (310)
.--++||++.-. ....+.++..+| ++..+.+.. .-.|-..+++.++.++..++..+.+|+
T Consensus 11 ~~l~v~nLp~~~---t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~ 78 (91)
T 2dgw_A 11 HTVKLRGAPFNV---TEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRY 78 (91)
T ss_dssp CEEEEECCCSSC---CHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEE
T ss_pred cEEEEECCCCCC---CHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcE
Confidence 344678886321 245677788888 777766521 235666799999999985555555543
No 255
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=23.59 E-value=1.5e+02 Score=22.67 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=32.0
Q ss_pred HHHHHHHHhhCCeEEEEec-------------CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 56 RNLSDLAKKYGDVLLLRMG-------------QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 56 ~~~~~~~~~yG~v~~~~~g-------------~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
..+.+...+||.|..+.+. |.-.|-..+.+.++.+... ++..|.+|+
T Consensus 144 ~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 144 GEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp HHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred HHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 4566667899999988773 1223445688877776654 677777776
No 256
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=23.39 E-value=1.3e+02 Score=22.29 Aligned_cols=58 Identities=12% Similarity=0.311 Sum_probs=38.0
Q ss_pred ccccccccCCCcchHHHHHHHHhhCCeEEEEecCe---------eEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 42 VFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQR---------NLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 42 ilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~---------~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
++||++. .-....+.++..+||+|..+.+... -.|-..+++.++.++.. ++..+.+|+
T Consensus 118 ~v~nl~~---~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 185 (198)
T 2yh0_A 118 FIGGLPN---YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 185 (198)
T ss_dssp EEECCCT---TCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCC---CCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4666653 1134567888899999988776422 34556789999888875 555554443
No 257
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=22.86 E-value=40 Score=19.21 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=8.8
Q ss_pred CCCcccccccc
Q 021610 38 LPVPVFGNWLQ 48 (310)
Q Consensus 38 ~~~pilGn~~~ 48 (310)
...|++||++.
T Consensus 29 s~ipilgn~fs 39 (57)
T 1b35_D 29 SHIPVLGNIFS 39 (57)
T ss_dssp TCCCCSCCSSS
T ss_pred hcccccccccc
Confidence 35799999975
No 258
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.90 E-value=48 Score=22.73 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=37.5
Q ss_pred cccccccccCCCcchHHHHHHHHhhCC---eEEEEec--------CeeEEEEcCHHHHHHHHHhcCcccCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGD---VLLLRMG--------QRNLVVVSSPDHAKEVLHTQGVEFGSR 101 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~---v~~~~~g--------~~~~vvi~~pe~i~evl~~~~~~f~~R 101 (310)
-++||+..-. ....+.++..+||. |..+.+. +.-.|-..+++.++.++..++..+.+|
T Consensus 20 l~V~nLp~~~---te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr 88 (118)
T 2db1_A 20 VKLRGLPWSC---SIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHR 88 (118)
T ss_dssp EEEESCCTTC---CHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTE
T ss_pred EEEeCCCCCC---CHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 4578886421 24567888888997 5544432 134667789999999988655444444
No 259
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.81 E-value=54 Score=21.46 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=39.7
Q ss_pred CCCCCCcccccccccCCCcchHHHHHHHHhhCCeEEEEe--c---CeeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 35 PGPLPVPVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRM--G---QRNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 35 pgP~~~pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~--g---~~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
+.|..--++||++.-. ....+.++..+||+|..... | +.-.|-..+++.++.++.. ++..+.+|+
T Consensus 12 ~~~~~~l~V~nLp~~~---t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 82 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSA---TEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 82 (101)
T ss_dssp SCCCSEEEEESCCTTC---CHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE
T ss_pred CCCCCEEEEeCCCCCC---CHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence 3344555788886421 34567778888998743322 1 2345667799999999874 444444443
No 260
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=21.37 E-value=2.2e+02 Score=20.02 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=39.4
Q ss_pred cccccccccCCCcchHHHHHHHHhhCCeEEEEecC---------eeEEEEcCHHHHHHHHHh-cCcccCCCC
Q 021610 41 PVFGNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQ---------RNLVVVSSPDHAKEVLHT-QGVEFGSRT 102 (310)
Q Consensus 41 pilGn~~~l~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvi~~pe~i~evl~~-~~~~f~~R~ 102 (310)
-++||++. .-....+.+...+||++..+.+.. .-.|-..+++.++.++.. ++..+.+|.
T Consensus 91 l~v~nl~~---~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 91 LYVSGLPK---TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred EEECCCCC---cCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 35677753 113456888889999998877632 135556799999999874 555555543
Done!