BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021611
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
G+L + G+ S+ F+KAI+LDP + Y +G +LY L+R+EE + + +
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 190 NDTEESIWCFLCEAQLY 206
++ + +W +A Y
Sbjct: 72 DEYNKDVWAAKADALRY 88
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%)
Query: 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190
G+ L + G+ + FD +ELDP RG++LYY R + + +PN
Sbjct: 84 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143
Query: 191 DTEESIWCFLCEAQL 205
D S+W +L E +L
Sbjct: 144 DPFRSLWLYLAEQKL 158
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%)
Query: 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190
G ++QGD ++ + KA+ELDP ++RG + Y +++ E ++ + +PN
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
Query: 191 DTE 193
+ +
Sbjct: 110 NAK 112
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155
A RRG ++QGD ++ ++ KA+ELDP
Sbjct: 77 AKAWYRRGNAYYKQGDYQKAIEDYQKALELDP 108
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
NS EA + G ++QGD ++ + KA+ELDP + + G + Y +++ E
Sbjct: 7 NSAEAWKNL--GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIE 64
Query: 180 QFRIDVAQNPNDTE 193
++ + +PN+ +
Sbjct: 65 YYQKALELDPNNAK 78
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
NS EA + G ++QGD ++ + KA+ELDP + G + Y ++E E
Sbjct: 7 NSAEAWYNL--GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 180 QFRIDVAQNPNDTEESIWCFLCEA 203
++ + +PN+ E W L A
Sbjct: 65 YYQKALELDPNNAE--AWYNLGNA 86
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190
G ++QGD ++ + KA+ELDP + G + Y ++E E ++ + +PN
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Query: 191 DTE 193
+ E
Sbjct: 110 NAE 112
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 35.0 bits (79), Expect = 0.051, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
NS EA + G ++QGD ++ + KA+ELDP + G + Y ++E E
Sbjct: 7 NSAEAWYNL--GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 180 QFRIDVAQNPNDTE 193
++ + +PN+ E
Sbjct: 65 YYQKALELDPNNAE 78
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
+ R A G ++QGD ++ + KA+ELDPR + G + Y ++E E
Sbjct: 31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90
Query: 180 QFRIDVAQNPNDTE 193
++ + +P E
Sbjct: 91 YYQKALELDPRSAE 104
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
+ R A G ++QGD ++ + KA+ELDPR + G + Y ++E E
Sbjct: 65 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Query: 180 QFRIDVAQNP 189
++ + +P
Sbjct: 125 YYQKALELDP 134
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190
G ++QGD ++ + KA+ELDPR + G + Y ++E E ++ + +P
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 191 DTE 193
E
Sbjct: 68 SAE 70
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156
+ R A G ++QGD ++ + KA+ELDPR
Sbjct: 99 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189
G ++QGD ++ + KA+ELDPR + G + Y ++E E ++ + +P
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156
+ R A G ++QGD ++ + KA+ELDPR
Sbjct: 33 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 69
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 148 DKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ 204
DKA+ LD + L++RG + ++ FE F + NP + + F+C+ +
Sbjct: 341 DKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 397
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 165 GLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEA-RNRFLEVGRDPR 223
G+ LY L R++ F + +NP D E W + +L V+ A N V R PR
Sbjct: 12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71
Query: 224 -----PVMREAY-NMFKGGGDPEK----LVAAFSSGRENEYF---YASLYA--GLFYE-- 266
V+ EAY +++ D E+ L A S ++ E YA L+ GL Y
Sbjct: 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131
Query: 267 -SQKKADAAKLHILAACESP 285
+ KA+A+ LA ++P
Sbjct: 132 GERDKAEASLKQALALEDTP 151
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
NS EA + G ++QGD ++ + KA+EL P + G + Y ++E E
Sbjct: 7 NSAEAWYNL--GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 180 QFRIDVAQNPNDTEESIWCFLCEA 203
++ + PN+ E W L A
Sbjct: 65 YYQKALELYPNNAE--AWYNLGNA 86
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
N+ EA + G ++QGD ++ + KA+EL P + G + Y ++E E
Sbjct: 41 NNAEAWYNL--GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 98
Query: 180 QFRIDVAQNPNDTE 193
++ + PN+ E
Sbjct: 99 YYQKALELYPNNAE 112
>pdb|1WCM|D Chain D, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
Length = 177
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 94 RAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153
R+ TR + S+ + + TGGNN + + FR + VG+V + K+ L
Sbjct: 69 RSQKKTREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGL 128
Query: 154 DPRQKAYL 161
P + A L
Sbjct: 129 HPFEVAQL 136
>pdb|1Y14|A Chain A, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
pdb|1Y14|C Chain C, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
Length = 187
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158
TR + S+ + + TGGNN + + FR + VG+V + K+ L P +
Sbjct: 84 TREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEV 143
Query: 159 AYL 161
A L
Sbjct: 144 AQL 146
>pdb|1PQV|D Chain D, Rna Polymerase Ii-Tfiis Complex
Length = 221
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158
TR + S+ + + TGGNN + + FR + VG+V + K+ L P +
Sbjct: 118 TREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEV 177
Query: 159 AYL 161
A L
Sbjct: 178 AQL 180
>pdb|3QT1|D Chain D, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
Length = 219
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158
TR + S+ + + TGGNN + + FR + VG+V + K+ L P +
Sbjct: 116 TREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEV 175
Query: 159 AYL 161
A L
Sbjct: 176 AQL 178
>pdb|1NT9|D Chain D, Complete 12-Subunit Rna Polymerase Ii
pdb|1Y1W|D Chain D, Complete Rna Polymerase Ii Elongation Complex
pdb|1Y77|D Chain D, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
pdb|1Y1V|D Chain D, Refined Rna Polymerase Ii-tfiis Complex
pdb|1Y1Y|D Chain D, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
pdb|2B63|D Chain D, Complete Rna Polymerase Ii-Rna Inhibitor Complex
pdb|2B8K|D Chain D, 12-Subunit Rna Polymerase Ii
pdb|2JA5|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
pdb|2JA6|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
pdb|2JA7|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA7|P Chain P, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA8|D Chain D, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
pdb|2R7Z|D Chain D, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
pdb|2R92|D Chain D, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
pdb|2R93|D Chain D, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
pdb|2VUM|D Chain D, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
pdb|3FKI|D Chain D, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
pdb|3H3V|E Chain E, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
pdb|3HOU|D Chain D, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOU|P Chain P, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOV|D Chain D, Complete Rna Polymerase Ii Elongation Complex Ii
pdb|3HOW|D Chain D, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
pdb|3HOX|D Chain D, Complete Rna Polymerase Ii Elongation Complex V
pdb|3HOY|D Chain D, Complete Rna Polymerase Ii Elongation Complex Vi
pdb|3HOZ|D Chain D, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
pdb|3I4M|D Chain D, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
pdb|3I4N|D Chain D, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
pdb|3K1F|D Chain D, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
pdb|3PO2|D Chain D, Arrested Rna Polymerase Ii Elongation Complex
pdb|3PO3|D Chain D, Arrested Rna Polymerase Ii Reactivation Intermediate
pdb|3J0K|D Chain D, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
pdb|4A3C|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
pdb|4A3B|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
pdb|4A3D|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
pdb|4A3E|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3F|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3J|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
pdb|4A3K|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
pdb|4A3L|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3M|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3G|D Chain D, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
pdb|4A3I|D Chain D, Rna Polymerase Ii Binary Complex With Dna
pdb|4A93|D Chain D, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
pdb|4BBR|D Chain D, Structure Of Rna Polymerase Ii-tfiib Complex
pdb|4BBS|D Chain D, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
Length = 221
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158
TR + S+ + + TGGNN + + FR + VG+V + K+ L P +
Sbjct: 118 TREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEV 177
Query: 159 AYL 161
A L
Sbjct: 178 AQL 180
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
RR + G ++ + K I L A QRG L + +E + F+ + N
Sbjct: 42 RRATVFLAXGKSKAALPDLTKVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101
Query: 189 PNDTEESIWCFLCEAQLYGVDE 210
P++ EE E+QL DE
Sbjct: 102 PSEQEEK----EAESQLVKADE 119
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179
N AV R + G+ G+V + ++AI +DP + GL+L L++ E
Sbjct: 42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA 101
Query: 180 QFRIDVAQNPND 191
++ + +P++
Sbjct: 102 YYKKALELDPDN 113
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
RR + G ++ + K I+L A QRG L + +E + F+ + N
Sbjct: 65 RRATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124
Query: 189 PNDTEESIWCFLCEAQLYGVDE 210
P++ EE ++QL DE
Sbjct: 125 PSENEEK----EAQSQLIKSDE 142
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR 173
G+ F + D +G+ + KAIEL PR +Y++ ++L DR
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIY---MALIMADR 283
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 148 DKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ 204
DKA+ LD + L++RG + ++ FE F + NP + + +C+ +
Sbjct: 341 DKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188
RR + G ++ + K I+L A QRG L + +E + F+ + N
Sbjct: 65 RRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124
Query: 189 PNDTEESIWCFLCEAQLYGVDE 210
P++ EE ++QL DE
Sbjct: 125 PSENEEK----EAQSQLIKSDE 142
>pdb|3QDL|A Chain A, Crystal Structure Of Rdxa From Helicobacter Pyroli
pdb|3QDL|B Chain B, Crystal Structure Of Rdxa From Helicobacter Pyroli
pdb|3QDL|C Chain C, Crystal Structure Of Rdxa From Helicobacter Pyroli
pdb|3QDL|D Chain D, Crystal Structure Of Rdxa From Helicobacter Pyroli
Length = 210
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 44 MALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLF 103
+ +T LK I Y F+ ++ S + L V + P GHY+QN P +
Sbjct: 55 VMVTDKDLKKQIAAHSY-FNEEMIKSASALMVVCSLRPSELLPHGHYMQNLYPESYKVRV 113
Query: 104 IPS 106
IPS
Sbjct: 114 IPS 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,489,411
Number of Sequences: 62578
Number of extensions: 391228
Number of successful extensions: 930
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 883
Number of HSP's gapped (non-prelim): 46
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)