Query 021611
Match_columns 310
No_of_seqs 214 out of 1653
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 04:19:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0547 Translocase of outer m 100.0 1.4E-31 3E-36 257.5 7.1 299 4-307 172-553 (606)
2 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-23 3E-28 214.6 6.3 279 5-285 184-497 (615)
3 PRK11189 lipoprotein NlpI; Pro 99.8 3.6E-19 7.8E-24 167.0 6.8 196 101-300 77-280 (296)
4 KOG4626 O-linked N-acetylgluco 99.8 5.3E-19 1.2E-23 174.7 6.5 194 107-306 237-437 (966)
5 KOG4626 O-linked N-acetylgluco 99.7 2E-18 4.4E-23 170.6 5.7 195 103-301 301-500 (966)
6 PRK12370 invasion protein regu 99.7 9.4E-17 2E-21 162.8 8.8 198 104-306 277-490 (553)
7 TIGR00990 3a0801s09 mitochondr 99.6 2.7E-16 5.8E-21 161.1 8.2 200 104-307 347-558 (615)
8 PRK11189 lipoprotein NlpI; Pro 99.6 3.3E-16 7.1E-21 147.0 7.0 200 104-308 42-253 (296)
9 KOG0547 Translocase of outer m 99.6 1.7E-16 3.7E-21 153.8 2.2 180 103-284 375-566 (606)
10 PRK12370 invasion protein regu 99.6 1.9E-15 4.1E-20 153.3 7.9 177 103-283 319-501 (553)
11 PRK15174 Vi polysaccharide exp 99.6 1.7E-15 3.6E-20 156.6 7.3 273 26-307 15-300 (656)
12 PRK15174 Vi polysaccharide exp 99.6 1.2E-14 2.5E-19 150.4 11.0 205 99-308 53-263 (656)
13 TIGR02521 type_IV_pilW type IV 99.5 1.3E-14 2.7E-19 126.1 8.5 185 122-308 29-220 (234)
14 PRK15359 type III secretion sy 99.5 9.6E-15 2.1E-19 123.2 7.3 81 108-193 13-93 (144)
15 KOG1126 DNA-binding cell divis 99.5 2.3E-14 4.9E-19 143.1 7.8 185 118-306 415-606 (638)
16 PRK11447 cellulose synthase su 99.5 5.1E-14 1.1E-18 153.9 10.3 202 101-308 364-654 (1157)
17 PRK11447 cellulose synthase su 99.5 4.4E-14 9.6E-19 154.4 8.8 203 101-307 282-545 (1157)
18 KOG1126 DNA-binding cell divis 99.5 5.1E-14 1.1E-18 140.7 7.4 178 104-286 437-622 (638)
19 TIGR02917 PEP_TPR_lipo putativ 99.5 9.1E-14 2E-18 143.4 8.9 199 103-306 140-344 (899)
20 KOG0624 dsRNA-activated protei 99.5 3.6E-13 7.9E-18 126.4 11.7 91 100-192 50-140 (504)
21 TIGR02917 PEP_TPR_lipo putativ 99.4 2.3E-13 5E-18 140.4 9.5 200 104-307 447-685 (899)
22 PRK11788 tetratricopeptide rep 99.4 2E-13 4.4E-18 130.7 7.9 201 104-307 51-265 (389)
23 COG3063 PilF Tfp pilus assembl 99.4 2.7E-13 5.8E-18 121.3 7.8 156 124-308 35-190 (250)
24 COG4785 NlpI Lipoprotein NlpI, 99.4 3.3E-13 7.2E-18 119.9 7.6 180 103-285 73-267 (297)
25 KOG0553 TPR repeat-containing 99.4 5.1E-14 1.1E-18 130.0 1.1 97 103-203 96-192 (304)
26 PRK09782 bacteriophage N4 rece 99.4 3.8E-13 8.2E-18 144.1 7.4 181 101-285 522-707 (987)
27 PLN02789 farnesyltranstransfer 99.4 7.1E-13 1.5E-17 126.0 7.4 197 103-303 52-267 (320)
28 PRK15359 type III secretion sy 99.4 5.7E-14 1.2E-18 118.5 -0.3 94 99-194 35-128 (144)
29 TIGR02521 type_IV_pilW type IV 99.4 9E-13 1.9E-17 114.4 7.2 180 102-283 45-231 (234)
30 PRK09782 bacteriophage N4 rece 99.3 3.3E-12 7.1E-17 136.9 10.0 197 105-307 493-693 (987)
31 PRK10049 pgaA outer membrane p 99.3 2.2E-12 4.8E-17 135.7 8.0 204 100-307 61-326 (765)
32 PF13414 TPR_11: TPR repeat; P 99.3 3.3E-13 7.1E-18 98.7 1.0 67 123-189 2-69 (69)
33 PRK11788 tetratricopeptide rep 99.3 2.3E-12 5E-17 123.4 6.7 181 101-284 120-311 (389)
34 TIGR03302 OM_YfiO outer membra 99.3 5.3E-12 1.2E-16 113.4 7.1 176 119-308 28-220 (235)
35 PRK15179 Vi polysaccharide bio 99.3 7.9E-12 1.7E-16 129.6 7.0 137 119-284 81-217 (694)
36 PRK10370 formate-dependent nit 99.2 2.8E-12 6E-17 114.0 2.3 112 105-218 56-170 (198)
37 KOG1155 Anaphase-promoting com 99.2 2.1E-11 4.5E-16 118.1 7.9 177 103-283 345-535 (559)
38 TIGR02552 LcrH_SycD type III s 99.2 6.3E-12 1.4E-16 103.1 3.6 108 109-218 4-111 (135)
39 TIGR03302 OM_YfiO outer membra 99.2 2.1E-11 4.5E-16 109.5 6.7 167 101-283 46-231 (235)
40 KOG1125 TPR repeat-containing 99.2 5.9E-11 1.3E-15 117.4 9.3 205 100-306 297-557 (579)
41 PLN03088 SGT1, suppressor of 99.2 3.6E-12 7.7E-17 122.9 0.5 101 103-205 17-117 (356)
42 PRK15363 pathogenicity island 99.2 1.4E-11 3.1E-16 105.0 3.8 101 118-218 28-129 (157)
43 PRK10049 pgaA outer membrane p 99.2 1E-10 2.3E-15 123.1 10.7 113 103-218 30-142 (765)
44 COG3063 PilF Tfp pilus assembl 99.1 9.8E-11 2.1E-15 105.0 7.9 181 100-283 47-235 (250)
45 KOG0553 TPR repeat-containing 99.1 3.6E-11 7.8E-16 111.3 5.0 117 124-305 81-197 (304)
46 KOG1155 Anaphase-promoting com 99.1 9E-11 1.9E-15 113.8 7.5 180 126-308 332-524 (559)
47 PF13432 TPR_16: Tetratricopep 99.1 1.6E-11 3.4E-16 88.8 0.9 65 128-192 1-65 (65)
48 PRK10370 formate-dependent nit 99.1 5.3E-11 1.1E-15 105.7 4.3 122 136-286 51-175 (198)
49 cd05804 StaR_like StaR_like; a 99.1 4.5E-10 9.7E-15 106.4 8.5 187 120-307 2-202 (355)
50 PF13429 TPR_15: Tetratricopep 99.1 1.3E-10 2.8E-15 107.5 4.5 195 104-307 60-264 (280)
51 PRK10747 putative protoheme IX 99.0 7.8E-10 1.7E-14 108.0 9.6 198 103-306 133-376 (398)
52 KOG1173 Anaphase-promoting com 99.0 4.8E-10 1E-14 110.9 7.8 73 119-191 307-379 (611)
53 PF13429 TPR_15: Tetratricopep 99.0 5.2E-11 1.1E-15 110.2 0.6 174 104-283 93-276 (280)
54 KOG1173 Anaphase-promoting com 99.0 6.2E-10 1.4E-14 110.1 8.0 179 104-286 328-520 (611)
55 PRK15179 Vi polysaccharide bio 99.0 1.2E-10 2.7E-15 120.8 3.0 116 101-218 99-214 (694)
56 PRK15363 pathogenicity island 99.0 6.8E-11 1.5E-15 100.9 0.8 89 102-192 49-137 (157)
57 TIGR02552 LcrH_SycD type III s 99.0 1.1E-10 2.4E-15 95.7 1.0 89 103-193 32-120 (135)
58 PLN02789 farnesyltranstransfer 99.0 2.5E-09 5.3E-14 101.9 9.4 181 119-303 32-229 (320)
59 COG5010 TadD Flp pilus assembl 99.0 1.5E-09 3.2E-14 98.9 7.3 99 119-217 95-193 (257)
60 KOG0548 Molecular co-chaperone 99.0 1.6E-10 3.5E-15 113.6 1.2 100 101-202 371-470 (539)
61 KOG2002 TPR-containing nuclear 99.0 1.2E-09 2.6E-14 113.4 7.4 197 105-307 147-358 (1018)
62 COG5010 TadD Flp pilus assembl 98.9 7.3E-09 1.6E-13 94.4 9.3 196 107-309 52-253 (257)
63 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 6.1E-10 1.3E-14 108.8 1.7 70 118-187 69-141 (453)
64 PRK14574 hmsH outer membrane p 98.9 1.1E-08 2.3E-13 108.3 10.7 183 118-305 28-217 (822)
65 KOG2076 RNA polymerase III tra 98.9 7E-09 1.5E-13 107.1 8.8 48 257-306 451-498 (895)
66 PLN03088 SGT1, suppressor of 98.8 1.2E-09 2.6E-14 105.4 1.9 92 127-218 5-96 (356)
67 KOG0550 Molecular chaperone (D 98.8 6.1E-09 1.3E-13 100.0 6.4 136 119-285 198-351 (486)
68 KOG1125 TPR repeat-containing 98.8 2.2E-09 4.8E-14 106.5 3.2 114 103-218 409-524 (579)
69 cd00189 TPR Tetratricopeptide 98.8 2.4E-09 5.2E-14 78.3 2.4 92 126-217 2-93 (100)
70 KOG1129 TPR repeat-containing 98.8 2.8E-08 6E-13 93.4 9.4 182 122-307 254-445 (478)
71 cd05804 StaR_like StaR_like; a 98.8 1.1E-08 2.4E-13 96.9 6.3 149 105-283 60-214 (355)
72 TIGR00540 hemY_coli hemY prote 98.8 1.8E-08 3.9E-13 98.6 7.7 197 104-306 134-385 (409)
73 PF13371 TPR_9: Tetratricopept 98.7 2.3E-09 5E-14 78.9 0.9 63 131-193 2-64 (73)
74 TIGR00540 hemY_coli hemY prote 98.7 1.7E-08 3.6E-13 98.9 7.1 112 104-217 100-212 (409)
75 KOG0624 dsRNA-activated protei 98.7 2.5E-08 5.3E-13 94.2 7.6 186 119-306 33-238 (504)
76 PRK02603 photosystem I assembl 98.7 9.6E-09 2.1E-13 88.6 4.0 98 113-210 24-124 (172)
77 PF12895 Apc3: Anaphase-promot 98.7 2.6E-09 5.7E-14 81.3 -0.0 79 103-184 4-84 (84)
78 cd00189 TPR Tetratricopeptide 98.7 6.6E-09 1.4E-13 75.9 2.1 86 103-190 15-100 (100)
79 TIGR02795 tol_pal_ybgF tol-pal 98.7 6.8E-09 1.5E-13 82.2 2.3 95 124-218 2-102 (119)
80 PRK15331 chaperone protein Sic 98.7 2.6E-08 5.7E-13 85.5 5.2 104 118-221 31-134 (165)
81 KOG0548 Molecular co-chaperone 98.6 9.8E-09 2.1E-13 101.2 1.9 114 103-218 339-452 (539)
82 KOG2003 TPR repeat-containing 98.6 1E-07 2.2E-12 92.8 8.4 197 104-307 472-676 (840)
83 TIGR02795 tol_pal_ybgF tol-pal 98.6 9.6E-09 2.1E-13 81.3 0.9 90 102-193 16-111 (119)
84 KOG0550 Molecular chaperone (D 98.6 3.7E-08 8E-13 94.8 4.9 199 102-308 63-338 (486)
85 CHL00033 ycf3 photosystem I as 98.6 3.5E-08 7.5E-13 84.7 3.5 74 121-194 32-108 (168)
86 PRK10747 putative protoheme IX 98.6 7.5E-08 1.6E-12 94.1 6.1 176 103-284 168-390 (398)
87 KOG2076 RNA polymerase III tra 98.6 1.2E-07 2.6E-12 98.2 7.7 183 123-307 138-332 (895)
88 KOG1174 Anaphase-promoting com 98.6 1.4E-07 3E-12 91.0 7.6 191 107-301 319-515 (564)
89 COG4235 Cytochrome c biogenesi 98.6 2.4E-08 5.1E-13 92.9 2.2 100 119-218 151-253 (287)
90 PF12688 TPR_5: Tetratrico pep 98.5 3.2E-08 6.9E-13 81.2 2.3 95 124-218 1-101 (120)
91 PF12895 Apc3: Anaphase-promot 98.5 6.2E-09 1.4E-13 79.2 -2.0 80 137-217 2-83 (84)
92 KOG1840 Kinesin light chain [C 98.5 1.4E-07 3.1E-12 94.6 6.6 190 118-307 193-425 (508)
93 PRK10866 outer membrane biogen 98.5 2.8E-07 6E-12 84.5 7.8 171 122-305 30-226 (243)
94 KOG2002 TPR-containing nuclear 98.5 1.1E-07 2.4E-12 99.1 5.1 203 104-308 512-733 (1018)
95 KOG0495 HAT repeat protein [RN 98.5 5E-07 1.1E-11 91.2 9.5 173 125-306 652-866 (913)
96 PF13525 YfiO: Outer membrane 98.5 1.5E-07 3.2E-12 83.8 4.9 171 123-306 4-193 (203)
97 PRK10803 tol-pal system protei 98.5 1.4E-07 3E-12 87.6 4.8 105 123-288 141-249 (263)
98 PF14559 TPR_19: Tetratricopep 98.5 1.9E-08 4.1E-13 72.9 -1.2 59 135-193 2-60 (68)
99 KOG0543 FKBP-type peptidyl-pro 98.5 4.8E-08 1E-12 93.9 1.2 69 125-193 258-326 (397)
100 PF13424 TPR_12: Tetratricopep 98.5 4.4E-08 9.4E-13 73.1 0.7 67 121-187 2-75 (78)
101 COG4783 Putative Zn-dependent 98.5 1.5E-07 3.3E-12 92.1 4.6 95 121-217 303-399 (484)
102 PRK02603 photosystem I assembl 98.5 5.7E-08 1.2E-12 83.8 1.5 89 101-191 48-153 (172)
103 PRK14574 hmsH outer membrane p 98.5 3.6E-07 7.8E-12 96.8 7.7 173 103-280 49-228 (822)
104 KOG1840 Kinesin light chain [C 98.4 3.3E-07 7.1E-12 92.0 7.0 179 104-283 257-478 (508)
105 COG4785 NlpI Lipoprotein NlpI, 98.4 2.8E-07 6.1E-12 82.5 5.6 126 121-246 62-189 (297)
106 PRK10153 DNA-binding transcrip 98.4 4.5E-07 9.7E-12 91.7 6.7 130 125-286 340-484 (517)
107 COG4783 Putative Zn-dependent 98.4 7.2E-07 1.6E-11 87.5 7.3 106 103-212 321-428 (484)
108 KOG1129 TPR repeat-containing 98.4 2.4E-07 5.1E-12 87.2 3.7 177 106-284 274-458 (478)
109 PRK11906 transcriptional regul 98.4 1.5E-07 3.2E-12 92.4 2.4 112 104-217 274-397 (458)
110 KOG1128 Uncharacterized conser 98.4 4.9E-07 1.1E-11 92.1 6.1 110 106-218 468-579 (777)
111 KOG4234 TPR repeat-containing 98.4 1.7E-07 3.6E-12 83.0 2.0 89 102-192 109-202 (271)
112 PF09976 TPR_21: Tetratricopep 98.4 6E-07 1.3E-11 75.3 5.3 122 132-282 19-145 (145)
113 KOG0376 Serine-threonine phosp 98.3 8.6E-08 1.9E-12 93.8 -0.2 93 99-193 15-107 (476)
114 PRK10866 outer membrane biogen 98.3 1.6E-06 3.4E-11 79.5 8.0 163 103-282 47-239 (243)
115 PRK11906 transcriptional regul 98.3 2.7E-07 5.8E-12 90.6 2.8 84 106-191 322-405 (458)
116 CHL00033 ycf3 photosystem I as 98.3 2.3E-07 5E-12 79.5 2.1 87 103-191 50-153 (168)
117 KOG4648 Uncharacterized conser 98.3 1.3E-07 2.9E-12 89.4 0.3 92 100-193 109-200 (536)
118 PF06552 TOM20_plant: Plant sp 98.3 1E-07 2.2E-12 82.9 -0.5 90 102-193 5-115 (186)
119 PRK14720 transcript cleavage f 98.3 1.4E-06 3E-11 92.3 6.8 191 103-302 46-268 (906)
120 PF13432 TPR_16: Tetratricopep 98.3 2.3E-07 5E-12 66.8 0.5 56 101-158 10-65 (65)
121 PF12569 NARP1: NMDA receptor- 98.3 4E-06 8.7E-11 84.7 9.6 180 124-307 4-244 (517)
122 KOG4555 TPR repeat-containing 98.2 2.2E-07 4.8E-12 77.1 0.3 84 104-189 59-146 (175)
123 PRK10803 tol-pal system protei 98.2 3E-07 6.4E-12 85.3 1.0 90 102-193 157-252 (263)
124 PLN03081 pentatricopeptide (PP 98.2 1.7E-06 3.7E-11 90.2 6.5 175 126-308 362-545 (697)
125 PF13414 TPR_11: TPR repeat; P 98.2 2.8E-07 6.1E-12 67.0 0.4 62 157-218 2-64 (69)
126 KOG4648 Uncharacterized conser 98.2 2.5E-07 5.5E-12 87.5 -0.2 91 127-217 100-190 (536)
127 PRK15331 chaperone protein Sic 98.2 3.2E-07 6.9E-12 78.9 -0.2 87 103-192 52-138 (165)
128 PF12569 NARP1: NMDA receptor- 98.2 1.9E-06 4.2E-11 86.9 5.2 137 125-283 195-333 (517)
129 KOG1174 Anaphase-promoting com 98.2 3.6E-06 7.9E-11 81.4 6.4 155 124-284 300-467 (564)
130 KOG1308 Hsp70-interacting prot 98.1 7E-07 1.5E-11 84.4 1.4 86 103-190 129-214 (377)
131 PLN03081 pentatricopeptide (PP 98.1 5.3E-06 1.2E-10 86.5 8.1 114 98-218 269-386 (697)
132 KOG1127 TPR repeat-containing 98.1 2.1E-06 4.6E-11 90.0 4.8 176 106-283 476-658 (1238)
133 PRK10153 DNA-binding transcrip 98.1 9.4E-07 2E-11 89.4 2.1 74 119-193 415-488 (517)
134 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1.1E-06 2.5E-11 86.2 2.3 69 152-220 69-140 (453)
135 KOG4162 Predicted calmodulin-b 98.1 3.6E-06 7.7E-11 86.3 5.9 132 125-285 651-784 (799)
136 KOG4555 TPR repeat-containing 98.1 3.5E-06 7.5E-11 70.1 4.3 65 125-189 44-108 (175)
137 KOG0495 HAT repeat protein [RN 98.1 9E-06 2E-10 82.4 8.1 200 100-306 528-734 (913)
138 PRK14720 transcript cleavage f 98.1 3.1E-06 6.8E-11 89.7 4.9 84 107-192 14-97 (906)
139 PF13371 TPR_9: Tetratricopept 98.1 8.2E-07 1.8E-11 65.1 -0.0 61 103-165 10-70 (73)
140 PLN03218 maturation of RBCL 1; 98.1 1.4E-05 3.1E-10 87.0 9.4 62 125-187 543-608 (1060)
141 KOG4162 Predicted calmodulin-b 98.1 1.8E-06 3.9E-11 88.4 2.3 98 119-218 679-780 (799)
142 KOG2003 TPR repeat-containing 98.0 1.3E-05 2.7E-10 78.5 7.9 161 123-283 453-620 (840)
143 PF13431 TPR_17: Tetratricopep 98.0 9.8E-07 2.1E-11 56.2 0.2 33 147-179 2-34 (34)
144 COG4235 Cytochrome c biogenesi 98.0 8.6E-06 1.9E-10 75.9 6.4 118 140-285 138-257 (287)
145 PLN03218 maturation of RBCL 1; 98.0 2.3E-05 4.9E-10 85.4 9.9 204 98-308 482-701 (1060)
146 PF00515 TPR_1: Tetratricopept 98.0 1.2E-06 2.7E-11 55.0 0.1 32 125-156 2-33 (34)
147 KOG1156 N-terminal acetyltrans 98.0 8E-06 1.7E-10 82.5 5.7 174 105-283 58-247 (700)
148 KOG1308 Hsp70-interacting prot 98.0 2.8E-06 6.1E-11 80.3 2.4 88 131-218 121-208 (377)
149 PF13428 TPR_14: Tetratricopep 98.0 1.8E-06 4E-11 57.8 0.8 43 124-166 1-43 (44)
150 PF09976 TPR_21: Tetratricopep 98.0 2.6E-06 5.5E-11 71.5 1.6 108 105-217 28-143 (145)
151 PF13525 YfiO: Outer membrane 98.0 9.6E-06 2.1E-10 72.1 5.0 158 103-276 20-199 (203)
152 KOG1127 TPR repeat-containing 98.0 1.4E-05 2.9E-10 84.1 6.6 169 135-307 469-646 (1238)
153 KOG4642 Chaperone-dependent E3 97.9 4.4E-06 9.5E-11 75.7 2.4 104 103-208 25-131 (284)
154 PLN03077 Protein ECB2; Provisi 97.9 3.8E-05 8.2E-10 82.0 9.8 168 132-309 532-709 (857)
155 KOG4642 Chaperone-dependent E3 97.9 2.6E-06 5.7E-11 77.1 0.8 95 124-218 10-104 (284)
156 KOG4340 Uncharacterized conser 97.9 1.3E-05 2.7E-10 75.0 4.9 170 135-308 21-195 (459)
157 PF13512 TPR_18: Tetratricopep 97.9 1.5E-05 3.2E-10 67.2 4.9 72 123-194 9-83 (142)
158 PF14559 TPR_19: Tetratricopep 97.9 1.7E-06 3.7E-11 62.5 -0.9 62 102-165 5-66 (68)
159 COG3071 HemY Uncharacterized e 97.9 4.1E-05 9E-10 73.6 7.7 204 97-306 127-376 (400)
160 PF00515 TPR_1: Tetratricopept 97.9 5.1E-06 1.1E-10 52.1 1.0 34 158-191 1-34 (34)
161 KOG1128 Uncharacterized conser 97.8 1.3E-05 2.8E-10 82.0 4.2 155 56-217 453-612 (777)
162 KOG2376 Signal recognition par 97.8 3E-05 6.4E-10 77.8 6.6 186 81-283 14-203 (652)
163 KOG3060 Uncharacterized conser 97.8 3.4E-05 7.4E-10 70.6 5.9 108 106-217 70-179 (289)
164 COG2956 Predicted N-acetylgluc 97.8 2E-05 4.3E-10 74.3 4.4 79 104-185 51-134 (389)
165 PF07719 TPR_2: Tetratricopept 97.8 1.1E-05 2.4E-10 50.2 1.6 33 159-191 2-34 (34)
166 PF07719 TPR_2: Tetratricopept 97.8 5.2E-06 1.1E-10 51.7 0.0 34 124-157 1-34 (34)
167 KOG1156 N-terminal acetyltrans 97.8 2.9E-05 6.3E-10 78.6 4.9 170 107-281 26-211 (700)
168 COG2956 Predicted N-acetylgluc 97.7 9E-05 2E-09 69.9 7.2 184 100-287 81-281 (389)
169 COG1729 Uncharacterized protei 97.7 1.3E-05 2.8E-10 73.9 1.6 94 127-220 144-243 (262)
170 KOG4234 TPR repeat-containing 97.7 1.2E-05 2.7E-10 71.3 1.3 95 124-218 95-194 (271)
171 PF12688 TPR_5: Tetratrico pep 97.7 1.7E-05 3.7E-10 65.1 2.0 88 99-186 12-103 (120)
172 PF13424 TPR_12: Tetratricopep 97.7 1.3E-05 2.9E-10 59.5 0.9 73 155-283 2-74 (78)
173 PF13431 TPR_17: Tetratricopep 97.6 1.2E-05 2.6E-10 51.1 0.1 34 110-145 1-34 (34)
174 KOG3060 Uncharacterized conser 97.6 4.3E-05 9.4E-10 69.9 3.7 89 103-193 101-189 (289)
175 KOG0543 FKBP-type peptidyl-pro 97.6 2.6E-05 5.5E-10 75.4 1.9 84 104-189 273-357 (397)
176 PLN03077 Protein ECB2; Provisi 97.6 0.00011 2.3E-09 78.5 6.9 179 98-283 534-719 (857)
177 PF13512 TPR_18: Tetratricopep 97.6 3.2E-05 6.8E-10 65.2 1.8 89 103-193 25-134 (142)
178 KOG0376 Serine-threonine phosp 97.5 3.7E-05 7.9E-10 75.7 2.1 93 127-219 7-99 (476)
179 PF13428 TPR_14: Tetratricopep 97.5 2.2E-05 4.9E-10 52.5 0.1 41 158-200 1-41 (44)
180 COG4105 ComL DNA uptake lipopr 97.5 0.00044 9.6E-09 63.4 8.5 73 123-195 33-108 (254)
181 PF04733 Coatomer_E: Coatomer 97.5 0.00035 7.5E-09 65.8 8.0 148 121-307 99-251 (290)
182 KOG1130 Predicted G-alpha GTPa 97.3 0.00023 4.9E-09 69.3 3.9 181 101-284 108-344 (639)
183 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 9.3E-05 2E-09 72.5 0.9 107 104-217 185-293 (395)
184 PF14938 SNAP: Soluble NSF att 97.2 0.0017 3.6E-08 60.6 8.9 158 124-307 35-212 (282)
185 PF06552 TOM20_plant: Plant sp 97.2 0.00031 6.6E-09 61.4 3.2 55 140-194 7-71 (186)
186 COG4700 Uncharacterized protei 97.2 0.00092 2E-08 59.0 6.1 67 125-191 90-157 (251)
187 KOG2376 Signal recognition par 97.2 0.0013 2.7E-08 66.4 7.8 120 126-247 14-134 (652)
188 PRK04841 transcriptional regul 97.1 0.00098 2.1E-08 71.2 7.5 184 124-307 531-747 (903)
189 PF13181 TPR_8: Tetratricopept 97.1 7.5E-05 1.6E-09 46.6 -0.7 30 160-189 3-32 (34)
190 COG0457 NrfG FOG: TPR repeat [ 97.1 0.0012 2.7E-08 54.1 6.4 166 119-284 90-265 (291)
191 PF09295 ChAPs: ChAPs (Chs5p-A 97.1 0.00023 5.1E-09 69.7 2.2 85 104-190 216-300 (395)
192 COG4700 Uncharacterized protei 97.1 0.00023 5E-09 62.7 1.9 116 100-217 101-218 (251)
193 KOG2610 Uncharacterized conser 97.1 0.00095 2.1E-08 63.6 6.0 116 101-220 116-237 (491)
194 PF04733 Coatomer_E: Coatomer 97.1 0.00024 5.2E-09 66.8 1.9 97 122-218 129-227 (290)
195 KOG2053 Mitochondrial inherita 97.0 0.0014 3.1E-08 68.7 6.3 201 104-309 25-244 (932)
196 PF13181 TPR_8: Tetratricopept 97.0 0.00028 6E-09 43.9 0.8 34 124-157 1-34 (34)
197 COG3071 HemY Uncharacterized e 96.9 0.0029 6.2E-08 61.2 7.9 113 103-217 99-212 (400)
198 KOG0551 Hsp90 co-chaperone CNS 96.9 0.00039 8.5E-09 65.9 1.8 87 104-190 97-185 (390)
199 PF14938 SNAP: Soluble NSF att 96.9 0.00086 1.9E-08 62.5 4.1 160 101-284 48-225 (282)
200 PRK04841 transcriptional regul 96.9 0.0024 5.2E-08 68.2 7.9 162 123-284 572-760 (903)
201 KOG0545 Aryl-hydrocarbon recep 96.9 0.00052 1.1E-08 62.8 2.4 152 36-191 94-297 (329)
202 KOG1130 Predicted G-alpha GTPa 96.9 0.0005 1.1E-08 67.0 2.2 93 125-217 196-300 (639)
203 KOG3785 Uncharacterized conser 96.8 0.0048 1E-07 59.3 8.4 53 130-182 63-115 (557)
204 PRK10941 hypothetical protein; 96.8 0.00052 1.1E-08 64.0 1.5 70 125-194 182-251 (269)
205 COG0457 NrfG FOG: TPR repeat [ 96.7 0.0058 1.3E-07 50.1 7.3 190 109-302 44-247 (291)
206 COG1729 Uncharacterized protei 96.7 0.00085 1.8E-08 62.0 2.0 88 104-193 157-250 (262)
207 COG4105 ComL DNA uptake lipopr 96.7 0.0053 1.1E-07 56.5 6.9 168 103-287 49-235 (254)
208 smart00028 TPR Tetratricopepti 96.5 0.0017 3.7E-08 37.7 2.0 32 159-190 2-33 (34)
209 KOG4340 Uncharacterized conser 96.5 0.0011 2.5E-08 62.2 1.5 173 107-283 29-206 (459)
210 smart00028 TPR Tetratricopepti 96.4 0.0008 1.7E-08 39.2 -0.0 33 125-157 2-34 (34)
211 PF13174 TPR_6: Tetratricopept 96.0 0.0035 7.5E-08 38.3 1.5 31 160-190 2-32 (33)
212 PF03704 BTAD: Bacterial trans 96.0 0.0029 6.2E-08 52.6 1.1 65 122-186 60-124 (146)
213 PF13174 TPR_6: Tetratricopept 95.9 0.0015 3.3E-08 39.9 -0.5 33 125-157 1-33 (33)
214 COG4976 Predicted methyltransf 95.9 0.005 1.1E-07 56.0 2.4 62 132-193 3-64 (287)
215 KOG0551 Hsp90 co-chaperone CNS 95.9 0.005 1.1E-07 58.5 2.5 98 119-216 75-177 (390)
216 KOG2796 Uncharacterized conser 95.8 0.0088 1.9E-07 55.5 3.5 115 109-225 198-320 (366)
217 PF10300 DUF3808: Protein of u 95.7 0.0039 8.5E-08 62.5 1.2 111 105-219 250-374 (468)
218 KOG2796 Uncharacterized conser 95.7 0.0073 1.6E-07 56.0 2.6 71 122-192 250-320 (366)
219 PF13176 TPR_7: Tetratricopept 95.6 0.0019 4.1E-08 41.2 -1.1 26 161-186 2-27 (36)
220 PF13176 TPR_7: Tetratricopept 95.5 0.0046 9.9E-08 39.4 0.6 31 126-156 1-31 (36)
221 KOG3785 Uncharacterized conser 95.4 0.03 6.6E-07 53.9 5.9 143 136-283 34-179 (557)
222 KOG3824 Huntingtin interacting 95.4 0.0092 2E-07 56.4 2.2 76 124-199 116-191 (472)
223 COG3118 Thioredoxin domain-con 95.4 0.061 1.3E-06 50.6 7.5 149 125-302 135-283 (304)
224 KOG0545 Aryl-hydrocarbon recep 95.3 0.011 2.3E-07 54.4 2.2 96 123-218 177-290 (329)
225 PF14561 TPR_20: Tetratricopep 94.9 0.015 3.2E-07 45.2 1.8 51 142-192 6-56 (90)
226 KOG1915 Cell cycle control pro 94.9 0.11 2.3E-06 52.0 8.1 165 119-283 317-499 (677)
227 KOG2047 mRNA splicing factor [ 94.8 0.12 2.7E-06 53.1 8.5 190 110-306 499-709 (835)
228 PF14853 Fis1_TPR_C: Fis1 C-te 94.4 0.016 3.4E-07 40.7 0.8 34 160-193 3-36 (53)
229 KOG1310 WD40 repeat protein [G 94.4 0.019 4E-07 57.8 1.4 86 105-192 391-479 (758)
230 PF03704 BTAD: Bacterial trans 94.3 0.043 9.3E-07 45.4 3.3 89 129-217 11-121 (146)
231 COG3118 Thioredoxin domain-con 94.1 0.018 3.9E-07 54.0 0.7 142 62-219 121-263 (304)
232 PF14853 Fis1_TPR_C: Fis1 C-te 94.0 0.017 3.7E-07 40.5 0.2 41 125-165 2-42 (53)
233 KOG2047 mRNA splicing factor [ 93.9 0.12 2.7E-06 53.1 6.2 158 123-284 101-277 (835)
234 KOG1941 Acetylcholine receptor 93.9 0.18 3.9E-06 48.9 7.0 158 124-284 83-275 (518)
235 KOG2053 Mitochondrial inherita 93.7 0.082 1.8E-06 55.9 4.6 145 136-283 21-182 (932)
236 PF09613 HrpB1_HrpK: Bacterial 93.5 0.052 1.1E-06 46.7 2.5 85 124-208 10-94 (160)
237 KOG2471 TPR repeat-containing 93.5 0.056 1.2E-06 54.0 3.0 134 122-302 238-380 (696)
238 KOG1915 Cell cycle control pro 93.3 0.33 7.2E-06 48.6 7.8 93 123-217 72-166 (677)
239 PF14561 TPR_20: Tetratricopep 93.3 0.051 1.1E-06 42.2 1.8 70 111-182 11-82 (90)
240 COG2912 Uncharacterized conser 93.3 0.025 5.4E-07 52.5 0.1 69 126-194 183-251 (269)
241 PF13281 DUF4071: Domain of un 92.9 0.18 3.9E-06 49.2 5.4 148 120-285 175-335 (374)
242 KOG1070 rRNA processing protei 92.9 0.27 5.9E-06 54.5 7.2 55 137-191 1437-1492(1710)
243 PF12968 DUF3856: Domain of Un 92.3 0.085 1.8E-06 43.4 2.0 97 168-283 19-128 (144)
244 COG4976 Predicted methyltransf 92.3 0.062 1.3E-06 49.0 1.3 57 99-157 6-62 (287)
245 PF12968 DUF3856: Domain of Un 92.1 0.093 2E-06 43.2 1.9 66 122-187 53-129 (144)
246 KOG1585 Protein required for f 91.5 0.44 9.6E-06 44.0 5.8 169 124-293 31-228 (308)
247 PF04184 ST7: ST7 protein; In 91.3 0.36 7.8E-06 48.5 5.4 103 114-220 194-323 (539)
248 KOG4507 Uncharacterized conser 91.2 0.16 3.4E-06 51.9 2.8 85 107-193 626-711 (886)
249 PF10300 DUF3808: Protein of u 91.2 0.18 4E-06 50.6 3.4 120 136-283 245-375 (468)
250 PF13374 TPR_10: Tetratricopep 91.2 0.1 2.2E-06 33.1 1.1 29 159-187 3-31 (42)
251 PF13374 TPR_10: Tetratricopep 91.1 0.061 1.3E-06 34.2 -0.1 31 124-154 2-32 (42)
252 COG4649 Uncharacterized protei 90.6 1.9 4.1E-05 38.0 8.6 52 232-283 141-195 (221)
253 KOG3081 Vesicle coat complex C 90.5 0.18 4E-06 46.8 2.4 54 140-193 189-242 (299)
254 PF05843 Suf: Suppressor of fo 89.9 0.12 2.6E-06 48.2 0.7 107 105-213 18-128 (280)
255 COG3898 Uncharacterized membra 89.5 1.3 2.7E-05 43.6 7.2 178 101-285 201-393 (531)
256 KOG1070 rRNA processing protei 89.5 1.2 2.6E-05 49.6 7.9 50 104-155 1440-1490(1710)
257 KOG2471 TPR repeat-containing 89.1 0.077 1.7E-06 53.0 -1.2 84 118-203 275-378 (696)
258 PF05843 Suf: Suppressor of fo 89.1 0.15 3.1E-06 47.7 0.6 94 125-220 2-98 (280)
259 PF12862 Apc5: Anaphase-promot 88.2 0.15 3.2E-06 39.6 -0.0 58 133-190 7-73 (94)
260 KOG1310 WD40 repeat protein [G 88.1 0.37 8E-06 48.8 2.7 97 121-217 371-470 (758)
261 PRK10941 hypothetical protein; 88.0 0.15 3.4E-06 47.5 0.0 59 104-164 197-255 (269)
262 PF07721 TPR_4: Tetratricopept 87.7 0.49 1.1E-05 27.7 2.1 24 257-280 3-26 (26)
263 KOG0546 HSP90 co-chaperone CPR 87.3 0.35 7.7E-06 46.5 2.0 72 122-193 273-344 (372)
264 PF07720 TPR_3: Tetratricopept 87.3 0.38 8.3E-06 30.9 1.6 33 159-191 2-36 (36)
265 KOG3617 WD40 and TPR repeat-co 87.3 1.3 2.8E-05 47.3 6.1 29 255-283 967-995 (1416)
266 PF08424 NRDE-2: NRDE-2, neces 87.2 0.53 1.1E-05 44.8 3.2 159 110-286 7-185 (321)
267 PF07721 TPR_4: Tetratricopept 87.2 0.3 6.4E-06 28.7 0.9 23 160-182 3-25 (26)
268 KOG3364 Membrane protein invol 87.2 0.41 8.9E-06 40.2 2.1 71 124-194 32-107 (149)
269 PF10516 SHNi-TPR: SHNi-TPR; 87.1 0.14 3.1E-06 33.3 -0.5 28 160-187 3-30 (38)
270 KOG3824 Huntingtin interacting 86.8 0.34 7.4E-06 46.1 1.5 64 103-168 131-194 (472)
271 COG2976 Uncharacterized protei 86.6 4.6 9.9E-05 36.1 8.4 114 142-284 70-188 (207)
272 PF10516 SHNi-TPR: SHNi-TPR; 86.4 0.34 7.5E-06 31.5 1.0 29 125-153 2-30 (38)
273 TIGR02561 HrpB1_HrpK type III 86.3 0.44 9.6E-06 40.6 1.9 83 125-207 11-93 (153)
274 PF04184 ST7: ST7 protein; In 86.1 1.6 3.5E-05 44.0 5.9 47 169-217 179-225 (539)
275 KOG3616 Selective LIM binding 85.9 0.32 6.9E-06 51.0 0.9 140 126-283 767-910 (1636)
276 KOG3081 Vesicle coat complex C 85.5 0.48 1E-05 44.1 1.8 74 119-192 202-276 (299)
277 KOG1550 Extracellular protein 85.1 2 4.4E-05 44.0 6.4 156 122-283 242-425 (552)
278 COG3914 Spy Predicted O-linked 85.0 1.2 2.6E-05 45.6 4.5 77 118-194 59-138 (620)
279 KOG0530 Protein farnesyltransf 84.8 0.26 5.5E-06 45.9 -0.3 113 103-217 58-172 (318)
280 PF09986 DUF2225: Uncharacteri 84.2 0.75 1.6E-05 41.4 2.4 68 122-189 116-196 (214)
281 PF09613 HrpB1_HrpK: Bacterial 83.8 0.46 9.9E-06 40.9 0.9 69 104-174 26-94 (160)
282 KOG3617 WD40 and TPR repeat-co 83.5 0.83 1.8E-05 48.6 2.7 27 257-283 914-940 (1416)
283 COG3898 Uncharacterized membra 82.9 6.5 0.00014 38.8 8.3 49 136-184 166-214 (531)
284 COG5191 Uncharacterized conser 81.6 0.45 9.8E-06 45.3 -0.0 79 119-199 102-181 (435)
285 COG3629 DnrI DNA-binding trans 80.9 1.1 2.4E-05 42.1 2.3 66 122-187 151-216 (280)
286 KOG1585 Protein required for f 80.7 1.8 3.9E-05 40.1 3.5 63 125-187 72-139 (308)
287 KOG2610 Uncharacterized conser 80.2 1.5 3.2E-05 42.4 2.8 66 120-185 168-236 (491)
288 KOG1941 Acetylcholine receptor 80.2 1 2.3E-05 43.8 1.9 65 125-189 123-193 (518)
289 KOG2396 HAT (Half-A-TPR) repea 79.1 1.5 3.2E-05 44.3 2.6 85 107-193 90-175 (568)
290 PF11207 DUF2989: Protein of u 77.9 15 0.00032 32.9 8.3 77 229-307 113-194 (203)
291 KOG4814 Uncharacterized conser 77.7 2 4.4E-05 44.5 3.1 92 127-218 357-454 (872)
292 PF07720 TPR_3: Tetratricopept 77.6 0.76 1.6E-05 29.5 0.1 34 124-157 1-36 (36)
293 COG2976 Uncharacterized protei 76.7 1.9 4.1E-05 38.4 2.4 65 125-191 127-192 (207)
294 KOG2396 HAT (Half-A-TPR) repea 76.2 1.1 2.3E-05 45.2 0.7 57 104-162 121-178 (568)
295 PF10579 Rapsyn_N: Rapsyn N-te 75.4 2.1 4.6E-05 32.5 2.0 59 124-182 6-67 (80)
296 PF15015 NYD-SP12_N: Spermatog 75.4 2.1 4.5E-05 42.5 2.4 60 125-184 229-288 (569)
297 TIGR02561 HrpB1_HrpK type III 75.0 1 2.2E-05 38.4 0.2 68 104-173 26-93 (153)
298 PF10602 RPN7: 26S proteasome 75.0 1.8 4E-05 37.6 1.8 52 257-308 38-90 (177)
299 PF02259 FAT: FAT domain; Int 73.4 2.4 5.1E-05 39.8 2.3 69 122-190 250-341 (352)
300 PF10373 EST1_DNA_bind: Est1 D 73.4 1.6 3.4E-05 39.8 1.0 46 143-188 1-46 (278)
301 COG3914 Spy Predicted O-linked 73.3 1.8 3.9E-05 44.3 1.5 81 111-193 90-177 (620)
302 COG2912 Uncharacterized conser 73.3 0.96 2.1E-05 42.1 -0.4 48 118-165 209-256 (269)
303 PF15015 NYD-SP12_N: Spermatog 73.2 1.3 2.7E-05 43.9 0.4 91 124-214 183-284 (569)
304 PF10255 Paf67: RNA polymerase 72.7 2.5 5.3E-05 41.8 2.3 62 124-186 122-192 (404)
305 PF10602 RPN7: 26S proteasome 71.7 1.6 3.5E-05 38.0 0.7 98 124-221 36-142 (177)
306 KOG1586 Protein required for f 70.2 6.6 0.00014 36.2 4.2 65 124-189 34-104 (288)
307 KOG1586 Protein required for f 69.7 9.6 0.00021 35.2 5.2 98 122-220 72-182 (288)
308 KOG0529 Protein geranylgeranyl 69.5 2.5 5.4E-05 41.6 1.5 95 103-201 90-190 (421)
309 KOG0985 Vesicle coat protein c 68.6 27 0.00058 38.6 8.8 157 122-302 1102-1260(1666)
310 KOG4507 Uncharacterized conser 68.6 2.3 5E-05 43.8 1.1 57 137-193 226-284 (886)
311 KOG1914 mRNA cleavage and poly 68.0 9 0.0002 39.2 5.0 160 122-284 277-464 (656)
312 PRK13184 pknD serine/threonine 68.0 2.7 5.8E-05 45.8 1.5 70 123-193 511-587 (932)
313 COG0790 FOG: TPR repeat, SEL1 67.1 28 0.00061 31.9 8.0 157 125-285 74-267 (292)
314 PF02259 FAT: FAT domain; Int 66.9 17 0.00037 33.9 6.6 67 120-186 142-212 (352)
315 KOG0530 Protein farnesyltransf 65.9 6 0.00013 37.1 3.1 94 108-203 98-192 (318)
316 KOG1550 Extracellular protein 65.8 20 0.00043 36.8 7.3 139 139-283 227-392 (552)
317 PF04910 Tcf25: Transcriptiona 65.4 3.9 8.5E-05 39.7 2.0 76 119-194 35-140 (360)
318 COG0790 FOG: TPR repeat, SEL1 65.3 17 0.00037 33.3 6.2 168 127-305 44-236 (292)
319 cd02682 MIT_AAA_Arch MIT: doma 64.4 4 8.7E-05 30.7 1.4 29 124-152 6-34 (75)
320 KOG1464 COP9 signalosome, subu 62.4 4.4 9.5E-05 38.2 1.6 49 138-186 41-93 (440)
321 COG5191 Uncharacterized conser 62.1 1.5 3.3E-05 41.9 -1.5 61 100-162 119-180 (435)
322 PF04781 DUF627: Protein of un 61.4 5.7 0.00012 32.2 1.9 61 131-191 3-77 (111)
323 PRK15180 Vi polysaccharide bio 61.2 9 0.00019 38.8 3.6 98 119-217 318-416 (831)
324 PF09986 DUF2225: Uncharacteri 60.5 25 0.00054 31.6 6.1 45 254-299 164-208 (214)
325 PF04781 DUF627: Protein of un 60.1 4.7 0.0001 32.6 1.2 30 164-193 2-31 (111)
326 PF07079 DUF1347: Protein of u 58.8 4.3 9.2E-05 40.7 0.9 48 134-182 472-519 (549)
327 COG4455 ImpE Protein of avirul 57.9 4.5 9.9E-05 36.9 0.8 61 133-193 10-70 (273)
328 COG3947 Response regulator con 56.1 7.7 0.00017 36.9 2.0 58 127-184 282-339 (361)
329 PF11207 DUF2989: Protein of u 56.1 5.5 0.00012 35.7 1.0 56 122-178 139-198 (203)
330 KOG2300 Uncharacterized conser 55.1 24 0.00051 35.9 5.3 88 101-188 288-397 (629)
331 PHA02537 M terminase endonucle 54.9 1.1E+02 0.0024 27.9 9.3 35 252-286 164-209 (230)
332 KOG2300 Uncharacterized conser 53.1 24 0.00052 35.8 5.0 66 123-191 366-434 (629)
333 KOG0546 HSP90 co-chaperone CPR 52.7 7.7 0.00017 37.6 1.5 53 107-161 294-346 (372)
334 TIGR03504 FimV_Cterm FimV C-te 51.6 5.6 0.00012 26.7 0.3 23 129-151 4-26 (44)
335 PF14863 Alkyl_sulf_dimr: Alky 51.3 5.6 0.00012 33.5 0.3 54 124-177 70-123 (141)
336 KOG2041 WD40 repeat protein [G 50.4 39 0.00085 35.9 6.2 29 158-186 796-824 (1189)
337 COG4649 Uncharacterized protei 50.3 28 0.0006 30.9 4.4 96 124-220 94-195 (221)
338 KOG1914 mRNA cleavage and poly 49.4 13 0.00029 38.0 2.6 72 113-187 11-82 (656)
339 PF10373 EST1_DNA_bind: Est1 D 44.5 6.4 0.00014 35.7 -0.4 62 107-170 1-62 (278)
340 TIGR03504 FimV_Cterm FimV C-te 43.2 21 0.00045 23.9 2.1 25 259-283 3-27 (44)
341 PF13281 DUF4071: Domain of un 43.1 43 0.00093 32.8 5.0 60 158-217 141-207 (374)
342 PF11846 DUF3366: Domain of un 42.9 16 0.00035 31.7 1.9 54 136-190 123-176 (193)
343 KOG0686 COP9 signalosome, subu 42.9 19 0.00042 35.6 2.6 54 257-310 152-206 (466)
344 cd02679 MIT_spastin MIT: domai 42.7 23 0.0005 26.8 2.4 27 257-283 10-36 (79)
345 KOG0529 Protein geranylgeranyl 41.9 15 0.00032 36.3 1.7 93 103-197 44-150 (421)
346 PF04212 MIT: MIT (microtubule 41.0 28 0.0006 25.0 2.6 25 259-283 9-33 (69)
347 KOG2561 Adaptor protein NUB1, 39.2 77 0.0017 31.9 6.0 124 149-283 148-295 (568)
348 PF04212 MIT: MIT (microtubule 38.7 11 0.00025 27.1 0.3 21 165-185 12-32 (69)
349 KOG3364 Membrane protein invol 38.5 10 0.00022 32.1 -0.1 39 123-161 70-108 (149)
350 PF12862 Apc5: Anaphase-promot 38.0 29 0.00063 26.5 2.5 31 254-284 40-70 (94)
351 COG2909 MalT ATP-dependent tra 36.7 42 0.00091 36.3 4.1 67 124-190 458-529 (894)
352 smart00386 HAT HAT (Half-A-TPR 36.1 14 0.0003 21.3 0.3 22 172-193 1-22 (33)
353 PF10579 Rapsyn_N: Rapsyn N-te 35.1 23 0.0005 26.9 1.4 55 158-214 6-65 (80)
354 COG4941 Predicted RNA polymera 34.7 8 0.00017 37.4 -1.4 88 103-193 311-400 (415)
355 PRK11619 lytic murein transgly 33.7 1.6E+02 0.0035 31.0 7.8 155 140-305 295-453 (644)
356 PF08424 NRDE-2: NRDE-2, neces 33.1 21 0.00045 33.9 1.1 81 103-187 46-131 (321)
357 cd02682 MIT_AAA_Arch MIT: doma 32.5 24 0.00052 26.5 1.1 32 161-192 9-47 (75)
358 cd02681 MIT_calpain7_1 MIT: do 32.4 18 0.00039 27.2 0.4 15 171-185 19-33 (76)
359 KOG3616 Selective LIM binding 32.2 1.1E+02 0.0024 33.0 6.2 152 125-284 825-1024(1636)
360 PRK15180 Vi polysaccharide bio 32.2 52 0.0011 33.6 3.7 45 138-182 303-347 (831)
361 COG3629 DnrI DNA-binding trans 32.0 49 0.0011 31.1 3.4 60 156-217 151-212 (280)
362 PF04053 Coatomer_WDAD: Coatom 32.0 65 0.0014 32.3 4.4 100 169-283 329-430 (443)
363 KOG2581 26S proteasome regulat 30.8 40 0.00088 33.5 2.6 60 133-192 218-281 (493)
364 KOG2062 26S proteasome regulat 30.4 2.6E+02 0.0057 30.1 8.5 170 136-308 369-554 (929)
365 COG5107 RNA14 Pre-mRNA 3'-end 30.1 54 0.0012 33.2 3.4 169 110-283 290-494 (660)
366 KOG2114 Vacuolar assembly/sort 29.3 2E+02 0.0043 31.3 7.5 38 119-156 362-401 (933)
367 KOG2041 WD40 repeat protein [G 29.3 85 0.0018 33.6 4.7 35 149-184 684-718 (1189)
368 PF12854 PPR_1: PPR repeat 28.3 25 0.00054 21.7 0.5 25 125-149 8-32 (34)
369 cd02683 MIT_1 MIT: domain cont 28.3 22 0.00048 26.6 0.3 16 176-191 31-46 (77)
370 COG4259 Uncharacterized protei 28.1 2.3E+02 0.0051 22.8 6.0 65 227-294 37-109 (121)
371 PF07079 DUF1347: Protein of u 28.1 1.2E+02 0.0027 30.7 5.5 139 126-283 8-156 (549)
372 KOG4151 Myosin assembly protei 27.9 60 0.0013 34.6 3.5 88 106-193 71-162 (748)
373 KOG0890 Protein kinase of the 27.8 1.8E+02 0.0039 35.1 7.4 70 120-191 1666-1735(2382)
374 smart00671 SEL1 Sel1-like repe 27.5 66 0.0014 19.0 2.4 27 257-283 3-33 (36)
375 PF02064 MAS20: MAS20 protein 26.4 19 0.00041 29.6 -0.4 31 126-156 65-95 (121)
376 cd02677 MIT_SNX15 MIT: domain 26.4 23 0.0005 26.4 0.1 16 171-186 19-34 (75)
377 PF08238 Sel1: Sel1 repeat; I 25.8 73 0.0016 19.3 2.4 14 270-283 23-36 (39)
378 smart00745 MIT Microtubule Int 24.5 73 0.0016 23.2 2.6 24 260-283 13-36 (77)
379 PF04053 Coatomer_WDAD: Coatom 24.3 2.5E+02 0.0053 28.2 7.0 70 236-308 331-406 (443)
380 KOG1839 Uncharacterized protei 23.9 78 0.0017 35.7 3.6 67 122-188 930-1003(1236)
381 PF04910 Tcf25: Transcriptiona 23.4 2.1E+02 0.0044 27.8 6.1 123 151-283 33-167 (360)
382 COG2909 MalT ATP-dependent tra 22.9 2.4E+02 0.0052 30.8 6.8 97 122-218 413-523 (894)
383 PF09670 Cas_Cas02710: CRISPR- 22.1 1.2E+02 0.0026 29.7 4.2 63 125-187 132-198 (379)
384 PF02064 MAS20: MAS20 protein 21.8 52 0.0011 27.0 1.4 29 162-190 67-95 (121)
385 PF08631 SPO22: Meiosis protei 21.6 70 0.0015 29.5 2.4 88 106-193 11-122 (278)
386 PF04875 DUF645: Protein of un 21.1 29 0.00062 24.7 -0.3 13 28-40 7-19 (59)
387 PRK11619 lytic murein transgly 21.0 3.8E+02 0.0082 28.3 7.9 62 236-303 325-388 (644)
388 PF08631 SPO22: Meiosis protei 20.7 38 0.00082 31.3 0.4 53 135-187 4-65 (278)
389 KOG3783 Uncharacterized conser 20.4 53 0.0011 33.7 1.3 70 118-189 261-334 (546)
390 cd02679 MIT_spastin MIT: domai 20.2 46 0.00099 25.2 0.7 33 139-186 4-36 (79)
No 1
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-31 Score=257.53 Aligned_cols=299 Identities=18% Similarity=0.164 Sum_probs=201.1
Q ss_pred cccccchhhHHHhhhccc-chhhhhhh-----hhhhhhhheehhhhhhhhhhh---cCCCC--------------CCCch
Q 021611 4 TFGALSLSQTYQKSRTQL-PKILHLHQ-----LYYYKFCIFFQFTSMALTQHV---LKPTI--------------NPPLY 60 (310)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------~~~~~ 60 (310)
||.||++||+|+|+++|| .|+|.|.+ +|.|++||+++|.|.|++--+ ||+++ .|||+
T Consensus 172 ~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~ 251 (606)
T KOG0547|consen 172 CTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSA 251 (606)
T ss_pred HHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcH
Confidence 799999999999999999 99999999 899999999999998876544 88777 79999
Q ss_pred hhhhhhhccCCCccccccccccc------------------------------------ccCccccc----CCCCccccc
Q 021611 61 SFHRSLLTSKAPLSVQTHINSLF------------------------------------STPRGHYL----QNRAPTFTR 100 (310)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~l~~~~------------------------------------~~~~~~~~----~~~~~~~~~ 100 (310)
+||-||+.||.+.+-+...++.- +....+.. +..+.++.-
T Consensus 252 ~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 252 TFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred HHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 99999999998877633222210 00000000 000111111
Q ss_pred hh-------cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhh
Q 021611 101 RL-------FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR 173 (310)
Q Consensus 101 ~~-------~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~ 173 (310)
++ ..-++...++++|. ++|.+...|+.||.+|..+.+.++-..+|++|..+||.++..|+.||.+++.+++
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~--l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIK--LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHh--cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH
Confidence 11 23345566667777 8888777788888888888888888888888888888888888888888888888
Q ss_pred hhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHH----hhcCCCChHHHHHHhcC-
Q 021611 174 FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYN----MFKGGGDPEKLVAAFSS- 248 (310)
Q Consensus 174 ~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~----l~~~~~~~e~al~~~~~- 248 (310)
|++|+.+|++|++++|++..+++....+..+.++++++...|.++...... ..++|. .+..++++++|++.+..
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 888888888888888887765444333333677777777777665432110 113333 33445666667666642
Q ss_pred -CCCcc----hhHh--hhhhhh-hhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 249 -GRENE----YFYA--SLYAGL-FYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 249 -~~~~d----~~~a--~~~lG~-~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
.+.+. ...+ ....|+ +..=.+++.+|+..+++|+++. ++++..+-+||.+.+++|+.
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhH
Confidence 12221 1111 112222 2222377788888888888743 56677777888887777763
No 2
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.4e-23 Score=214.64 Aligned_cols=279 Identities=19% Similarity=0.109 Sum_probs=211.8
Q ss_pred ccccchhhHHHhhhccc-chhhhhhh-----hhhhhhhheehhhhhhhhhhh---cCC-------------CCCCCchhh
Q 021611 5 FGALSLSQTYQKSRTQL-PKILHLHQ-----LYYYKFCIFFQFTSMALTQHV---LKP-------------TINPPLYSF 62 (310)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~~ 62 (310)
..||.++|+++|+..|| .+|.++.+ .||++.|++++|.+.+..+.+ +++ ..++|+.+|
T Consensus 184 ~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~ 263 (615)
T TIGR00990 184 TAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTF 263 (615)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 46899999999999999 99999998 689999999999987765554 222 238999999
Q ss_pred hhhhhccCCCcccccccccccccCcccccCCCCccc-------cchhcccchhhhhhhhcCC-CCchhHHHHHHHhhhhh
Q 021611 63 HRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTF-------TRRLFIPSVSGIWDALTGG-NNNSREAVVAIRRGMLL 134 (310)
Q Consensus 63 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~a~~~~~~ai~~-~~~P~~~~a~~~rG~~~ 134 (310)
+++|+..+.+......++.... +.... ......+ ...+.+.+|...|++++.. ..+|+.+.+|..+|.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~ 341 (615)
T TIGR00990 264 VGNYLQSFRPKPRPAGLEDSNE-LDEET-GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFK 341 (615)
T ss_pred HHHHHHHccCCcchhhhhcccc-ccccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Confidence 9999998877665432221110 00000 0000000 0112355677888888762 34699999999999999
Q ss_pred eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHh
Q 021611 135 FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR 214 (310)
Q Consensus 135 ~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~ 214 (310)
+.+|++++|+.+|+++++++|++..+|+.+|.++..+|++++|+..|+++++++|+++..+..++.+...+|++++|+..
T Consensus 342 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 421 (615)
T TIGR00990 342 CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKD 421 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987555444445578999999999
Q ss_pred HHHhc---CCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611 215 FLEVG---RDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADAAKLHILAACESP 285 (310)
Q Consensus 215 l~~~~---~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~ 285 (310)
+.++. |+....+......+...|++++++..+.. ...|+....+.++|.++..+|++++|+..|++|+++.
T Consensus 422 ~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 422 YQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 88743 33222222233344457889998888763 2345556677789999999999999999999999964
No 3
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.77 E-value=3.6e-19 Score=167.03 Aligned_cols=196 Identities=18% Similarity=0.213 Sum_probs=147.0
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.+....|...|++++. ++|+++.+|+.+|.++...|++++|++.|+++++++|++..+++++|.+++..|++++|+++
T Consensus 77 ~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 77 LGLRALARNDFSQALA--LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred CCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3455678888888998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc-CCChhhHHH-HHHhhcCCCChHHHHHHhc----CC--CCc
Q 021611 181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG-RDPRPVMRE-AYNMFKGGGDPEKLVAAFS----SG--REN 252 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~-~d~~~~~~~-a~~l~~~~~~~e~al~~~~----~~--~~~ 252 (310)
|+++++++|+++...+|..+.. ..+++++|+..+.+.. ..+.+.+.. ...++.+....+++++.+. .. ..+
T Consensus 155 ~~~al~~~P~~~~~~~~~~l~~-~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~ 233 (296)
T PRK11189 155 LLAFYQDDPNDPYRALWLYLAE-SKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAE 233 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHH-ccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHH
Confidence 9999999999975445543332 4567999999986532 222222221 1122232333333443332 11 123
Q ss_pred chhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 021611 253 EYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKV 300 (310)
Q Consensus 253 d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~ 300 (310)
....+++++|.++..+|++++|+.+|++|++++.. ...+|.+.+-.+
T Consensus 234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~-~~~e~~~~~~e~ 280 (296)
T PRK11189 234 RLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY-NFVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-hHHHHHHHHHHH
Confidence 45678999999999999999999999999996532 334666655443
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=5.3e-19 Score=174.72 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=146.4
Q ss_pred hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
+...|.++.. ++|+.+++|+++|.+|-..+.|++|+..|.+|+.+.|++..++-++|.+|+.+|..|-|++.|++|++
T Consensus 237 aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~ 314 (966)
T KOG4626|consen 237 AIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE 314 (966)
T ss_pred HHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHh
Confidence 4444555555 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccceeeeehhh--hhcChHHHHHhHHH---hcCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhh
Q 021611 187 QNPNDTEESIWCFLCEA--QLYGVDEARNRFLE---VGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASL 259 (310)
Q Consensus 187 l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~---~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~ 259 (310)
++|+++++ +++++.+ ..|+..||.+++.+ ..+.....+..+...+..++.+|+|...+... -.|+...++.
T Consensus 315 ~~P~F~~A--y~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n 392 (966)
T KOG4626|consen 315 LQPNFPDA--YNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN 392 (966)
T ss_pred cCCCchHH--HhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence 99999885 4455555 67889999888766 34445555555555666677777776666533 2455566677
Q ss_pred hhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 260 YAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 260 ~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
++|.+|.++|++++|+.+|+.|++++.. -.|.+.|+|.++-.+|+
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~--fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPT--FADALSNMGNTYKEMGD 437 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCch--HHHHHHhcchHHHHhhh
Confidence 7778888888888888888888775532 34666677666655553
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.73 E-value=2e-18 Score=170.65 Aligned_cols=195 Identities=13% Similarity=0.043 Sum_probs=111.3
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
..+=|.+.|.++|+ ++|+.+++|.++|.++-..|+..||+..|++|+++.|+.+.+.+++|.++.++|.+++|...|.
T Consensus 301 ~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~ 378 (966)
T KOG4626|consen 301 LLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYL 378 (966)
T ss_pred cHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHH
Confidence 34445555556665 6666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc---CCChhhHHHHHHhhcCCCChHHHHHHhc--CCCCcchhHh
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG---RDPRPVMREAYNMFKGGGDPEKLVAAFS--SGRENEYFYA 257 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~---~d~~~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a 257 (310)
++++..|+.+.+..+.+....+.|++++|+.++.++. |.....+......++..|+..+|++++. +..+|....|
T Consensus 379 ~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeA 458 (966)
T KOG4626|consen 379 KALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEA 458 (966)
T ss_pred HHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHH
Confidence 6666666655532222222225566666666655432 2222222222233445556666666664 2345556666
Q ss_pred hhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHh
Q 021611 258 SLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVH 301 (310)
Q Consensus 258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~ 301 (310)
|-++|.+|.+.|++.+|++.|+.|++++. ..++..-||+..+
T Consensus 459 hsNLasi~kDsGni~~AI~sY~~aLklkP--DfpdA~cNllh~l 500 (966)
T KOG4626|consen 459 HSNLASIYKDSGNIPEAIQSYRTALKLKP--DFPDAYCNLLHCL 500 (966)
T ss_pred HhhHHHHhhccCCcHHHHHHHHHHHccCC--CCchhhhHHHHHH
Confidence 77777777777777777777777777543 3446666665443
No 6
>PRK12370 invasion protein regulator; Provisional
Probab=99.67 E-value=9.4e-17 Score=162.79 Aligned_cols=198 Identities=9% Similarity=-0.034 Sum_probs=153.7
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheec---------cccccchhhhhhccccCcchhhHHHhhccchhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ---------GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF 174 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~---------g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~ 174 (310)
..+|..++.+++. ++|+++.+|..+|.++..+ +++++|+..+++|++++|+++.++..+|.++...|++
T Consensus 277 ~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3467788889998 9999999999999877644 4478999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhh-HHHHHHhhcCCCChHHHHHHhcCC-
Q 021611 175 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPV-MREAYNMFKGGGDPEKLVAAFSSG- 249 (310)
Q Consensus 175 ~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~-~~~a~~l~~~~~~~e~al~~~~~~- 249 (310)
++|+..|+++++++|+++.++.+.+.+....|++++|+..+.++ .|+.... +..+..++. .|++++|++.+...
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~eeA~~~~~~~l 433 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHHHHHHHHHHHH
Confidence 99999999999999999886555555556889999999988774 3332211 222222333 56788887776532
Q ss_pred --CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 250 --RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 250 --~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
.+++...++.++|.++..+|++++|+..+++..... ..+..++..++..+++.|+
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccHH
Confidence 234455567889999999999999999999987733 2344666677777777663
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.64 E-value=2.7e-16 Score=161.07 Aligned_cols=200 Identities=12% Similarity=0.099 Sum_probs=111.0
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
..+|...+++++. ++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.+++.+|++++|+.+|++
T Consensus 347 ~~eA~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 347 HLEALADLSKSIE--LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred HHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4456666666666 66776777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc---CCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcc--h--
Q 021611 184 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG---RDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENE--Y-- 254 (310)
Q Consensus 184 Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~---~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d--~-- 254 (310)
+++++|++...+...+.+..++|++++|+..+.++. |+....+......+...|++++|+..+... ..++ .
T Consensus 425 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~ 504 (615)
T TIGR00990 425 SIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY 504 (615)
T ss_pred HHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc
Confidence 777777665532222222335666666666665532 222222222222344456666665554311 1111 0
Q ss_pred --hHhhhhh-hhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 255 --FYASLYA-GLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 255 --~~a~~~l-G~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
....+.. +.++...|++++|+.++++++++. +.+...+..+|.++.++|++
T Consensus 505 ~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 505 MNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCH
Confidence 0011111 223333566666666666666643 23344555666666666653
No 8
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.63 E-value=3.3e-16 Score=147.02 Aligned_cols=200 Identities=14% Similarity=0.062 Sum_probs=142.5
Q ss_pred ccchhhhhhhhcCC-CCch-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGG-NNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 104 ~~~a~~~~~~ai~~-~~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
...+...+++++.. .++| +.+..|+.+|.++...|++++|+.+|+++++++|+++.+|+++|.++..+|++++|++.|
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34566777777752 3455 458999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc-CCChhhHHHHHH-hhcCCCChHHHHHHhcCC---CCcchhH
Q 021611 182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG-RDPRPVMREAYN-MFKGGGDPEKLVAAFSSG---RENEYFY 256 (310)
Q Consensus 182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~-~d~~~~~~~a~~-l~~~~~~~e~al~~~~~~---~~~d~~~ 256 (310)
+++++++|++..++..++.+....|++++|+..+.++. .+|.......+. +....++.++|+..+... .+++.
T Consensus 122 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~-- 199 (296)
T PRK11189 122 DSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ-- 199 (296)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--
Confidence 99999999998755444444557899999999987743 233322222221 233456788887777421 12221
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHhhc---CC--CCCCChHHHHHHHHHhhcccCCc
Q 021611 257 ASLYAGLFYESQKKADAAKLHILAACE---SP--YGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 257 a~~~lG~~~~~~G~~d~A~~~~~kAl~---~~--~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
+ ..+..+..+|+.+++ ..+..+++ .. ...+..+.++.||.++...|++.
T Consensus 200 -~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~ 253 (296)
T PRK11189 200 -W-GWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLD 253 (296)
T ss_pred -c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 1 135555667777554 24444442 11 12234567889999999999863
No 9
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.7e-16 Score=153.75 Aligned_cols=180 Identities=17% Similarity=0.113 Sum_probs=149.9
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
.....+..|+.+.. +||+|++.|++||.+++-+++|++|+++|+++++|+|.+.-++.+++.+++++++++++...|+
T Consensus 375 ~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fe 452 (606)
T KOG0547|consen 375 QSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFE 452 (606)
T ss_pred ccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778887 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc---C-------CChhhHHHHHHhhcCCCChHHHHHHhcC--CC
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG---R-------DPRPVMREAYNMFKGGGDPEKLVAAFSS--GR 250 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~---~-------d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~ 250 (310)
.+.+.=|+.++.+...+-.+.-.++++.|.+.++++. + .+.|....+..++.-.+++.+++..+.. ..
T Consensus 453 e~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 453 EAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL 532 (606)
T ss_pred HHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc
Confidence 9999999999976665555556778999999887632 2 2345555555555555677778777763 34
Q ss_pred CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 251 ENEYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 251 ~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
+|....|...+|.+-.++|++++|++.|++++.+
T Consensus 533 Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 533 DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5666777788999999999999999999999873
No 10
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=1.9e-15 Score=153.29 Aligned_cols=177 Identities=14% Similarity=0.038 Sum_probs=139.7
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...+|...+.+++. ++|+++.+|..+|.++..+|++++|++.|++|++++|+++.+++.+|.++...|++++|+..|+
T Consensus 319 ~~~~A~~~~~~Al~--ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 319 AMIKAKEHAIKATE--LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35678888999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc----CCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhH
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG----RDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFY 256 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~----~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~ 256 (310)
++++++|+++....+........|++++|+..+.++. ++.......+...+...|+.++|.+.+.. ...++...
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~ 476 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLI 476 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHH
Confidence 9999999987643332223346788999999887743 22222222233345567899998887763 23445555
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 257 ASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 257 a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
+...++..|..+| ++|...+++.++
T Consensus 477 ~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 477 AVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 6666777888788 488888888666
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.59 E-value=1.7e-15 Score=156.62 Aligned_cols=273 Identities=11% Similarity=0.003 Sum_probs=166.6
Q ss_pred hhhhhhhhhhhheehhhhhhhhhhhcCCCCCCCchhhhhhhhccCCCcccccccccccccCcccc---cCCCCccccchh
Q 021611 26 HLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHY---LQNRAPTFTRRL 102 (310)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~ 102 (310)
-|+|-|+...|.+++=.-++++.+- -..--.--|+-..+.+.++..+..-+...+...-.|. +.-++..+ ..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l-~~g 90 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSA---GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPL-ASS 90 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhc---ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHh-hcC
Confidence 4677899999999876666665543 0111223467777777777666322222221111110 00011111 233
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...+|...+++++. .+|+++.+|..+|.++...|++++|++.|+++++++|+++.++..+|.++...|++++|+..++
T Consensus 91 ~~~~A~~~l~~~l~--~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 91 QPDAVLQVVNKLLA--VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 56778999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CCh--h-hHHHHHHhhcCCCChHHHHHHhcC--CCCcchhH
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPR--P-VMREAYNMFKGGGDPEKLVAAFSS--GRENEYFY 256 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~--~-~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~ 256 (310)
+++..+|+++..+.+. ......|++++|...+.++.. ++. . ........+...|+.++++..+.. ...|+...
T Consensus 169 ~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~ 247 (656)
T PRK15174 169 TQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA 247 (656)
T ss_pred HHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 9999999887643332 123356778888776655322 111 1 111111122234455554444431 12233333
Q ss_pred hhhhhhhhhhhccchhh----HHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 257 ASLYAGLFYESQKKADA----AKLHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 257 a~~~lG~~~~~~G~~d~----A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
+++.+|.++..+|++++ |+..|++++++. +.+...+.++|.++...|+|
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCH
Confidence 44445555555555443 455555555422 12334444445554444443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.56 E-value=1.2e-14 Score=150.39 Aligned_cols=205 Identities=7% Similarity=-0.163 Sum_probs=162.7
Q ss_pred cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~ 178 (310)
-+.+-..+|..++..++. ..|+++.+++.+|.+....|++++|++.|+++++++|+++.++..+|.++...|++++|+
T Consensus 53 ~~~g~~~~A~~l~~~~l~--~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVL--TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HhcCCcchhHHHhHHHHH--hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 344467788899998888 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--C-Cc
Q 021611 179 EQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--R-EN 252 (310)
Q Consensus 179 ~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~-~~ 252 (310)
+.|+++++++|+++..+.....+....|++++|...+.++ .+++......... +...|++++|+..+... . +.
T Consensus 131 ~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~ 209 (656)
T PRK15174 131 DLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFAL 209 (656)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999998874443333344789999999877653 3443333322222 34478888887776521 1 11
Q ss_pred chhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 253 EYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 253 d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
+.......+|.++..+|++++|+..|+++++.. +.+.+.+.++|.++..+|++.
T Consensus 210 ~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 210 ERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSR 263 (656)
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCch
Confidence 222333456788899999999999999999954 356788899999999999874
No 13
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.55 E-value=1.3e-14 Score=126.11 Aligned_cols=185 Identities=16% Similarity=0.130 Sum_probs=142.2
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC 201 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~ 201 (310)
..+.+++++|..+...|++++|++.|+++++.+|++..++..+|.++...|++++|++.|+++++.+|++.......+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999877643333333
Q ss_pred hhhhcChHHHHHhHHHhcCCC-----hhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhhH
Q 021611 202 EAQLYGVDEARNRFLEVGRDP-----RPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADAA 274 (310)
Q Consensus 202 ~a~l~~~~eA~~~l~~~~~d~-----~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A 274 (310)
....|++++|...+.++...+ ...+......+...|+.+++...+.. ...++...++..+|.++..+|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 447789999999888754321 11122222234456788887776652 22344455677899999999999999
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 275 KLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 275 ~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
..+++++++.. +.+.+.++.++.++...|++.
T Consensus 189 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 189 RAYLERYQQTY--NQTAESLWLGIRIARALGDVA 220 (234)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHH
Confidence 99999999952 345677788888888888764
No 14
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.55 E-value=9.6e-15 Score=123.19 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=75.9
Q ss_pred hhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611 108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 108 ~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l 187 (310)
..+++++++ ++|++ ++.+|.++...|++++|++.|++++.++|++..++.++|.++..+|++++|+..|++++++
T Consensus 13 ~~~~~~al~--~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS--VDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH--cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 367889998 99986 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc
Q 021611 188 NPNDTE 193 (310)
Q Consensus 188 ~P~d~~ 193 (310)
+|+++.
T Consensus 88 ~p~~~~ 93 (144)
T PRK15359 88 DASHPE 93 (144)
T ss_pred CCCCcH
Confidence 998865
No 15
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.3e-14 Score=143.15 Aligned_cols=185 Identities=15% Similarity=0.122 Sum_probs=109.4
Q ss_pred CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW 197 (310)
Q Consensus 118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~ 197 (310)
+.+|+.|+.|-..|+++..+++++.||..|.|||++||+|.-+|.-+|-=+....+||.|..+|++|+.++|++-. +|
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn--Aw 492 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN--AW 492 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH--HH
Confidence 3788889999999999999999999999999999998887777666666666666666666666666666666654 45
Q ss_pred eeehhh--hhcChHHHHHhHHHhcC-CChhh--HHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccc
Q 021611 198 CFLCEA--QLYGVDEARNRFLEVGR-DPRPV--MREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKK 270 (310)
Q Consensus 198 ~~l~~a--~l~~~~eA~~~l~~~~~-d~~~~--~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~ 270 (310)
++++.. +.++++.|.-.|+++.. .|+.. +.-+...+...++.++|+..++.+ .++......|..|.++...++
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 555444 55666666666655322 22221 111112223334455555444321 222233344455555556666
Q ss_pred hhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 271 ADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 271 ~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
+++|+..+++..++- +...-..+.+|+.|-++|+
T Consensus 573 ~~eal~~LEeLk~~v--P~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 573 YVEALQELEELKELV--PQESSVFALLGKIYKRLGN 606 (638)
T ss_pred hHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHHcc
Confidence 666666665555522 1222344555555555554
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.50 E-value=5.1e-14 Score=153.86 Aligned_cols=202 Identities=11% Similarity=0.065 Sum_probs=146.4
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccc-------------
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLS------------- 167 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a------------- 167 (310)
.+...+|...|.+++. ++|+++.+++.+|.++..+|++++|++.|+++++++|++..++..++.+
T Consensus 364 ~g~~~eA~~~~~~Al~--~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 364 ANNLAQAERLYQQARQ--VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3356678888888998 9999999999999999999999999999999999999988776655443
Q ss_pred -----------------------------hhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 168 -----------------------------LYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 168 -----------------------------~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
+...|++++|++.|+++++++|+++........+..+.|++++|+..+.++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445799999999999999999998764444444445789999999888764
Q ss_pred c---CCChh-hHHHHHH-------------------------------------------hhcCCCChHHHHHHhcCCCC
Q 021611 219 G---RDPRP-VMREAYN-------------------------------------------MFKGGGDPEKLVAAFSSGRE 251 (310)
Q Consensus 219 ~---~d~~~-~~~~a~~-------------------------------------------l~~~~~~~e~al~~~~~~~~ 251 (310)
. ++... .+..+.. .+...|+.++|++.+.. .
T Consensus 522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--~ 599 (1157)
T PRK11447 522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--Q 599 (1157)
T ss_pred HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh--C
Confidence 2 22111 1111110 11123344444444432 2
Q ss_pred cchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 252 NEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 252 ~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
|+....++.+|.++..+|++++|+..|+++++.. +.+.+.+.+++.++...|++.
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHH
Confidence 3344456778889999999999999999999854 345688888888888888753
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.49 E-value=4.4e-14 Score=154.36 Aligned_cols=203 Identities=12% Similarity=0.046 Sum_probs=146.0
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhH--------------HHhhcc
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAY--------------LWQRGL 166 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a--------------~~~~G~ 166 (310)
.+...+|...+.+++. ++|+++.+++.+|.++..+|++++|++.|+++++++|++... ...+|.
T Consensus 282 ~g~~~~A~~~l~~aL~--~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 282 SGQGGKAIPELQQAVR--ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 3456788999999998 999999999999999999999999999999999999986431 235688
Q ss_pred chhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc---CCChhhHHHHHHh-----------
Q 021611 167 SLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG---RDPRPVMREAYNM----------- 232 (310)
Q Consensus 167 a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~---~d~~~~~~~a~~l----------- 232 (310)
++...|++++|++.|+++++++|+++.++...+.+....|++++|++.+.++. ++....+..+..+
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence 88999999999999999999999887654333333447899999999887743 3322221111111
Q ss_pred -------------------------------hcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhhHHHHHH
Q 021611 233 -------------------------------FKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADAAKLHIL 279 (310)
Q Consensus 233 -------------------------------~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~ 279 (310)
+...++.++|++.+.. ...|+...+++.+|.++..+|++++|+..|+
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1124556666655542 2345556667778888888888888888888
Q ss_pred HhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 280 AACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 280 kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
++++.. +.+.+....++.++...|+|
T Consensus 520 ~al~~~--P~~~~~~~a~al~l~~~~~~ 545 (1157)
T PRK11447 520 RLAQQK--PNDPEQVYAYGLYLSGSDRD 545 (1157)
T ss_pred HHHHcC--CCCHHHHHHHHHHHHhCCCH
Confidence 888743 23456666666666655554
No 18
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=5.1e-14 Score=140.65 Aligned_cols=178 Identities=18% Similarity=0.162 Sum_probs=145.2
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
-+.|...+.++|. +||+++=+|--+|.=+.....+|.|...|++||.++|.+..|||.+|.+|.++++++.|.-.|++
T Consensus 437 h~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 437 HDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred HHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence 4568888889998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCccceeeeehh--hhhcChHHHHHhHHHhcC----CChhhHHHHHHhhcCCCChHHHHHHhc--CCCCcchh
Q 021611 184 DVAQNPNDTEESIWCFLCE--AQLYGVDEARNRFLEVGR----DPRPVMREAYNMFKGGGDPEKLVAAFS--SGRENEYF 255 (310)
Q Consensus 184 Al~l~P~d~~~~~~~~l~~--a~l~~~~eA~~~l~~~~~----d~~~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~ 255 (310)
|+++||.+.. +...++. .++|+.++|+..+.++.. ++-..+..+..++ ..+++++++..++ ...-|+..
T Consensus 515 A~~INP~nsv--i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~-~~~~~~eal~~LEeLk~~vP~es 591 (638)
T KOG1126|consen 515 AVEINPSNSV--ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF-SLGRYVEALQELEELKELVPQES 591 (638)
T ss_pred hhcCCccchh--HHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH-hhcchHHHHHHHHHHHHhCcchH
Confidence 9999998865 3344443 378999999999888432 3333333444334 4677777776665 23445667
Q ss_pred HhhhhhhhhhhhccchhhHHHHHHHhhcCCC
Q 021611 256 YASLYAGLFYESQKKADAAKLHILAACESPY 286 (310)
Q Consensus 256 ~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~ 286 (310)
..++.+|.+|..+|+.+.|+.+|.=|.++..
T Consensus 592 ~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 592 SVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 7788999999999999999999999999653
No 19
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.47 E-value=9.1e-14 Score=143.37 Aligned_cols=199 Identities=15% Similarity=0.078 Sum_probs=120.0
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...+|...|.+++. .+|+++.+++.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|++.|+
T Consensus 140 ~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 217 (899)
T TIGR02917 140 QLELAQKSYEQALA--IDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217 (899)
T ss_pred CHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44567777777776 7788788888888888888888888888888888888887888888888888888888888888
Q ss_pred hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc---CCChh-hHHHHHHhhcCCCChHHHHHHhcC--CCCcchhH
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG---RDPRP-VMREAYNMFKGGGDPEKLVAAFSS--GRENEYFY 256 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~---~d~~~-~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~ 256 (310)
++++++|+++........+....|++++|...+.++. ++... ....+...+ ..|++++++..+.. ...++...
T Consensus 218 ~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~~~~~~~~ 296 (899)
T TIGR02917 218 KAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDF-QKKNYEDARETLQDALKSAPEYLP 296 (899)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCchh
Confidence 8888888776543333333345677777777665532 21111 111222222 24555655555431 11223333
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 257 ASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 257 a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
+++.+|.++..+|++++|+.+|+++++.. +.+......++.++...|+
T Consensus 297 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~ 344 (899)
T TIGR02917 297 ALLLAGASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGR 344 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCC
Confidence 44455666666666666666666665522 1222333344444444444
No 20
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.47 E-value=3.6e-13 Score=126.37 Aligned_cols=91 Identities=18% Similarity=0.288 Sum_probs=85.8
Q ss_pred chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
.++.+.+|..-|.+++. .||+++.++|.||++|+.+|+...|+.+++++|++.|+|..+..+||.+++++|.+++|..
T Consensus 50 a~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEA 127 (504)
T ss_pred HhhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHH
Confidence 34467779999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCC
Q 021611 180 QFRIDVAQNPNDT 192 (310)
Q Consensus 180 ~f~~Al~l~P~d~ 192 (310)
+|+..+.-+|++-
T Consensus 128 DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 128 DFDQVLQHEPSNG 140 (504)
T ss_pred HHHHHHhcCCCcc
Confidence 9999999999653
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.44 E-value=2.3e-13 Score=140.39 Aligned_cols=200 Identities=14% Similarity=0.071 Sum_probs=92.2
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
..++...+.+.+. ..|+++..|..+|.++...|++++|++.|+++++++|++..+++++|.++...|++++|++.|++
T Consensus 447 ~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 447 FDKALAAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred HHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3344444444444 44445555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhccCCCCCccceeeeehhh----------------------------------hhcChHHHHHhHHHhc---CCChhhH
Q 021611 184 DVAQNPNDTEESIWCFLCEA----------------------------------QLYGVDEARNRFLEVG---RDPRPVM 226 (310)
Q Consensus 184 Al~l~P~d~~~~~~~~l~~a----------------------------------~l~~~~eA~~~l~~~~---~d~~~~~ 226 (310)
+++.+|++............ ..|++++|...+.++. +.....+
T Consensus 525 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 604 (899)
T TIGR02917 525 VLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAW 604 (899)
T ss_pred HHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 55555544332111111111 3344444444443321 1111112
Q ss_pred HHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcc
Q 021611 227 REAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLC 304 (310)
Q Consensus 227 ~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~ 304 (310)
......+...+++++++..+.. ...++...++..+|.++...|++++|...|+++++.. +.+.+.+..++.++...
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence 2222223334555555555431 1223333445556666666666666666666666532 22334444445555544
Q ss_pred cCC
Q 021611 305 RNW 307 (310)
Q Consensus 305 ~~~ 307 (310)
|+|
T Consensus 683 ~~~ 685 (899)
T TIGR02917 683 KRT 685 (899)
T ss_pred CCH
Confidence 444
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.44 E-value=2e-13 Score=130.75 Aligned_cols=201 Identities=12% Similarity=0.019 Sum_probs=108.9
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch----hhHHHhhccchhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ----KAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~----~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
..+|...|.+++. .+|+++.+++.+|.++...|++++|+..++++++..+.. ..++..+|.++...|++++|+.
T Consensus 51 ~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 51 PDKAIDLFIEMLK--VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred hHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4456666666666 667777777777777777777777777777766643211 2455666777777777777777
Q ss_pred hhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CChh-------hHHHHHHhhcCCCChHHHHHHhcCC--
Q 021611 180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPRP-------VMREAYNMFKGGGDPEKLVAAFSSG-- 249 (310)
Q Consensus 180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~~-------~~~~a~~l~~~~~~~e~al~~~~~~-- 249 (310)
.|+++++.+|.+..++........+.|++++|+..+.++.. ++.+ .+......+...+++++|+..+...
T Consensus 129 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 208 (389)
T PRK11788 129 LFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA 208 (389)
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 77777766665543222222222355666666666555321 1110 0001111223345566665555421
Q ss_pred CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 250 RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 250 ~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
..++...+++.+|.++..+|++++|+..|+++++... ....+.+..++.+++..|++
T Consensus 209 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 209 ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP-EYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHcCCH
Confidence 1233444555666666666666666666666665211 11123344556666666654
No 23
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=2.7e-13 Score=121.30 Aligned_cols=156 Identities=19% Similarity=0.124 Sum_probs=124.9
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 203 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a 203 (310)
..+.+.+|+-|+..|++..|...+++||+.||++..+|..|+.+|..+|+.+.|-+.|++|+.++|++.+...+++.-+.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999875444433333
Q ss_pred hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 204 QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 204 ~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
..|++++|...|.++..+|. -+.....+-++|.|-.++|+.+.|+.+|+++++
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~---------------------------Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 115 AQGRPEEAMQQFERALADPA---------------------------YGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred hCCChHHHHHHHHHHHhCCC---------------------------CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 56778888777776544332 112222344799999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHhhcccCCc
Q 021611 284 SPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 284 ~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
+.. ..+.....++..|..-|++.
T Consensus 168 ~dp--~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 168 LDP--QFPPALLELARLHYKAGDYA 190 (250)
T ss_pred hCc--CCChHHHHHHHHHHhcccch
Confidence 542 22355678888888888764
No 24
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.42 E-value=3.3e-13 Score=119.91 Aligned_cols=180 Identities=19% Similarity=0.300 Sum_probs=141.0
Q ss_pred cccchhhhhhh-------hcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhh
Q 021611 103 FIPSVSGIWDA-------LTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFE 175 (310)
Q Consensus 103 ~~~~a~~~~~~-------ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~ 175 (310)
...+..++|.- ++. ++|+-|+++..+|.-+...|+|+.|.+.|+.++++||.+.-++.|||++++.-|||+
T Consensus 73 vlYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 44456666654 466 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH-hcCCChhhHHH-HHHhhcCCCChHHHHHHhcCCC-C-
Q 021611 176 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE-VGRDPRPVMRE-AYNMFKGGGDPEKLVAAFSSGR-E- 251 (310)
Q Consensus 176 eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~-~~~d~~~~~~~-a~~l~~~~~~~e~al~~~~~~~-~- 251 (310)
-|.++|.+--+-||+||-...|.++...+ .++.+|...+.+ .....++.|+. +..++.+.-..+.+++.+.... +
T Consensus 151 LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k-~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPFRSLWLYLNEQK-LDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred hhHHHHHHHHhcCCCChHHHHHHHHHHhh-CCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 99999999999999999888888875544 467888877654 33333344432 2334444445555555543211 1
Q ss_pred ----cchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611 252 ----NEYFYASLYAGLFYESQKKADAAKLHILAACESP 285 (310)
Q Consensus 252 ----~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~ 285 (310)
.-...++||+|..+..+|+.++|...|+-|+.++
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1145678999999999999999999999999954
No 25
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=5.1e-14 Score=130.02 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=91.0
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
.+.+|.+.|+++|. ++|+|+..|-+|+.+|.++|.++.|++|+.+||++||.++.+|-.+|++++-+|++++|++.|+
T Consensus 96 ~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ayk 173 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYK 173 (304)
T ss_pred hHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 56779999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccceeeeehhh
Q 021611 183 IDVAQNPNDTEESIWCFLCEA 203 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a 203 (310)
++++++|++.. +|.+|..+
T Consensus 174 KaLeldP~Ne~--~K~nL~~A 192 (304)
T KOG0553|consen 174 KALELDPDNES--YKSNLKIA 192 (304)
T ss_pred hhhccCCCcHH--HHHHHHHH
Confidence 99999999874 56666555
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.40 E-value=3.8e-13 Score=144.08 Aligned_cols=181 Identities=8% Similarity=-0.045 Sum_probs=122.6
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.+...+|...|.++.. ..|. ...++.+|.++...|++++|++.|+++++++|++...+..++..+..+|++++|+..
T Consensus 522 ~Gr~eeAi~~~rka~~--~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 522 VEDYATALAAWQKISL--HDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred CCCHHHHHHHHHHHhc--cCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3346667777776654 4333 345778888888888888888888888888888777666666666666888888888
Q ss_pred hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchh
Q 021611 181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYF 255 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~ 255 (310)
|+++++++|+ +..+...+.+..++|++++|+..+.++ .|+...........+...|+.+++++.+.. ...|+..
T Consensus 599 ~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 599 LTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 8888888885 443332233334778888888877663 333333332333344456777777776652 2355666
Q ss_pred HhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611 256 YASLYAGLFYESQKKADAAKLHILAACESP 285 (310)
Q Consensus 256 ~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~ 285 (310)
.+++.+|.++..+|++++|+.+|++|+++.
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 777788888888888888888888888854
No 27
>PLN02789 farnesyltranstransferase
Probab=99.38 E-value=7.1e-13 Score=126.00 Aligned_cols=197 Identities=10% Similarity=-0.028 Sum_probs=148.4
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheecc-ccccchhhhhhccccCcchhhHHHhhccchhhhhhh--hhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG-DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF--EEGAE 179 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g-~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~--~eA~~ 179 (310)
..+.|..+++++|. ++|+++.+|..||.++..+| +++++++.++++++.+|++..+|..||.++..+|+. +++++
T Consensus 52 ~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 52 RSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 66788999999998 99999999999999999999 689999999999999999999999999999999874 78899
Q ss_pred hhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh-cCCChh--hHHH-HHHhhcC--CCCh----HHHHHHhc--
Q 021611 180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV-GRDPRP--VMRE-AYNMFKG--GGDP----EKLVAAFS-- 247 (310)
Q Consensus 180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~-~~d~~~--~~~~-a~~l~~~--~~~~----e~al~~~~-- 247 (310)
.++++++++|++.+++..+..+...+|+++++++.+.++ ..+++. .+.. ...+... .+.. ++.+....
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 999999999999885444444455789999999988774 234333 2222 2222211 1222 34444442
Q ss_pred CCCCcchhHhhhhhhhhhhh----ccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhc
Q 021611 248 SGRENEYFYASLYAGLFYES----QKKADAAKLHILAACESPYGQRSDDYMAALAKVHSL 303 (310)
Q Consensus 248 ~~~~~d~~~a~~~lG~~~~~----~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~ 303 (310)
...+|+...++.++|.++.. +++..+|...+.+++..+ ..+...+.-|+.+++.
T Consensus 210 I~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 210 ILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc--CCcHHHHHHHHHHHHh
Confidence 23456667788888888877 466788999999988833 4566677777777764
No 28
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.38 E-value=5.7e-14 Score=118.48 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=88.3
Q ss_pred cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~ 178 (310)
.+.+...+|...|.+++. ++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|+
T Consensus 35 ~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 35 WQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred HHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 344456779999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCcc
Q 021611 179 EQFRIDVAQNPNDTEE 194 (310)
Q Consensus 179 ~~f~~Al~l~P~d~~~ 194 (310)
+.|+++++++|+++..
T Consensus 113 ~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 113 EAFQTAIKMSYADASW 128 (144)
T ss_pred HHHHHHHHhCCCChHH
Confidence 9999999999999873
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=9e-13 Score=114.41 Aligned_cols=180 Identities=11% Similarity=0.035 Sum_probs=136.3
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
+...++...+.+++. .+|+++.++..+|.++..+|++++|++.|+++++++|++..+++++|.++...|++++|++.|
T Consensus 45 ~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 122 (234)
T TIGR02521 45 GDLEVAKENLDKALE--HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF 122 (234)
T ss_pred CCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 356678888888888 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccceeeeeh--hhhhcChHHHHHhHHHhc---CCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcch
Q 021611 182 RIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFLEVG---RDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEY 254 (310)
Q Consensus 182 ~~Al~l~P~d~~~~~~~~l~--~a~l~~~~eA~~~l~~~~---~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~ 254 (310)
+++++..+.......+..++ ....|++++|...+.++. ++....+......+...++++++...+... ..++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 202 (234)
T TIGR02521 123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT 202 (234)
T ss_pred HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99998643222222333333 347899999999887743 222222222233444578888877666421 12333
Q ss_pred hHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 255 FYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 255 ~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
......++.++...|+.++|..+.+.+.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 203 AESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44455688899999999999998887665
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.33 E-value=3.3e-12 Score=136.92 Aligned_cols=197 Identities=9% Similarity=-0.025 Sum_probs=135.0
Q ss_pred cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
.+|...|.+++. ..|++. .+..+|.++...|++++|+..|++++...|.. ..++..|.++...|++++|+..|+++
T Consensus 493 ~eAi~a~~~Al~--~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 493 GVALYAWLQAEQ--RQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred HHHHHHHHHHHH--hCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 346666666666 667543 35555666667888888888888877765553 45677788888888888888888888
Q ss_pred hccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CCh-hhHHHHHHhhcCCCChHHHHHHhc--CCCCcchhHhhhh
Q 021611 185 VAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPR-PVMREAYNMFKGGGDPEKLVAAFS--SGRENEYFYASLY 260 (310)
Q Consensus 185 l~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~-~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a~~~ 260 (310)
++++|++............+.|++++|+..+.++.. +|. ..+......+...|++++|+..+. ....|+...++..
T Consensus 569 L~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~n 648 (987)
T PRK09782 569 EQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAA 648 (987)
T ss_pred HhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 888876653221111111234888888888776432 222 222233334555788888888775 3345666778888
Q ss_pred hhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 261 AGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 261 lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
+|.++..+|++++|+.+|++|+++. +.+.+++.++|.++..+|+.
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999954 35678889999999988874
No 31
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.33 E-value=2.2e-12 Score=135.65 Aligned_cols=204 Identities=9% Similarity=0.031 Sum_probs=141.8
Q ss_pred chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
+.+...+|...|.+++. ++|+++.++..+|.++...|++++|+..++++++.+|++.. +..+|.++...|++++|+.
T Consensus 61 ~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 61 NLKQWQNSLTLWQKALS--LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHH
Confidence 33456789999999998 99999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hhhhhhccCCCCCccceeeeehhhhhcChHHHH----------------------------------------------H
Q 021611 180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR----------------------------------------------N 213 (310)
Q Consensus 180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~----------------------------------------------~ 213 (310)
.|+++++++|++++............+..++|+ +
T Consensus 138 ~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 138 AMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 999999999998774333222222233334333 3
Q ss_pred hHHHhc----CCCh--hhHHH-----HHHhhcCCCChHHHHHHhcCCC--C-cchhHhhhhhhhhhhhccchhhHHHHHH
Q 021611 214 RFLEVG----RDPR--PVMRE-----AYNMFKGGGDPEKLVAAFSSGR--E-NEYFYASLYAGLFYESQKKADAAKLHIL 279 (310)
Q Consensus 214 ~l~~~~----~d~~--~~~~~-----a~~l~~~~~~~e~al~~~~~~~--~-~d~~~a~~~lG~~~~~~G~~d~A~~~~~ 279 (310)
.+.++. .+|. +.... +..++ ..+++++|++.+.... . +.+.++..++|.+|..+|++++|+.+|+
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll-~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALL-ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHH-HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 222211 1111 11111 11223 3466777777665322 1 1234455667888889999999999999
Q ss_pred HhhcCCCCC--CChHHHHHHHHHhhcccCC
Q 021611 280 AACESPYGQ--RSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 280 kAl~~~~~~--~s~~~~~~la~~~~~~~~~ 307 (310)
++++.+... .+.+....|+.++...|++
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 988743221 1134455666667666654
No 32
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.32 E-value=3.3e-13 Score=98.70 Aligned_cols=67 Identities=33% Similarity=0.540 Sum_probs=65.6
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhh-hhhhhhhhhhhhhccCC
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD-RFEEGAEQFRIDVAQNP 189 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg-~~~eA~~~f~~Al~l~P 189 (310)
++..|+.+|.+++..|++++|+..|+++|+++|+++.+++++|.++..+| ++++|+++|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 58899999999999999999999999999999999999999999999999 89999999999999998
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.31 E-value=2.3e-12 Score=123.44 Aligned_cols=181 Identities=10% Similarity=0.042 Sum_probs=138.6
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh-----hHHHhhccchhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-----AYLWQRGLSLYYLDRFE 175 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-----~a~~~~G~a~~~lg~~~ 175 (310)
.+....|...+.+++. .+|.+..++..++.++...|++++|++.|+++++.+|... ..+..+|.++...|+++
T Consensus 120 ~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 120 AGLLDRAEELFLQLVD--EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCCHHHHHHHHHHHHc--CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 3456678888888887 7899999999999999999999999999999999988753 25667899999999999
Q ss_pred hhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CChh---hHHHHHHhhcCCCChHHHHHHhcCC--
Q 021611 176 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPRP---VMREAYNMFKGGGDPEKLVAAFSSG-- 249 (310)
Q Consensus 176 eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~~---~~~~a~~l~~~~~~~e~al~~~~~~-- 249 (310)
+|+..|+++++.+|++..++...+....+.|++++|...+.++.. ++.. .+..+...+...|+.+++.+.+...
T Consensus 198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 198 AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998776433333334478999999998887543 2322 1222333455578888887776521
Q ss_pred CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 250 RENEYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 250 ~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
..|+.. ....+|.++..+|++++|+..|+++++.
T Consensus 278 ~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 278 EYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred hCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 223332 3367899999999999999999999994
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.29 E-value=5.3e-12 Score=113.36 Aligned_cols=176 Identities=16% Similarity=0.085 Sum_probs=120.9
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh---hHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc-
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK---AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE- 194 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~---~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~- 194 (310)
.++..+..++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.+++..|++++|+..|+++++..|+++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4556789999999999999999999999999999999875 688999999999999999999999999999998762
Q ss_pred --ceeeeehhhhh--------cChHHHHHhHHHhcC-CChhhH-HHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhh
Q 021611 195 --SIWCFLCEAQL--------YGVDEARNRFLEVGR-DPRPVM-REAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAG 262 (310)
Q Consensus 195 --~~~~~l~~a~l--------~~~~eA~~~l~~~~~-d~~~~~-~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG 262 (310)
+...+.+.... |++++|+..+.++.. .|.... ..+..... .. ........+.+|
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~------~~--------~~~~~~~~~~~a 173 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMD------YL--------RNRLAGKELYVA 173 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHH------HH--------HHHHHHHHHHHH
Confidence 22222233222 567788887776422 222110 01110000 00 000112234577
Q ss_pred hhhhhccchhhHHHHHHHhhcCCC-CCCChHHHHHHHHHhhcccCCc
Q 021611 263 LFYESQKKADAAKLHILAACESPY-GQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 263 ~~~~~~G~~d~A~~~~~kAl~~~~-~~~s~~~~~~la~~~~~~~~~~ 308 (310)
.++..+|++++|+..|+++++... .....+.+..++.++...|++.
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~ 220 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKD 220 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence 778888888888888888887311 1223467778888888877764
No 35
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.25 E-value=7.9e-12 Score=129.61 Aligned_cols=137 Identities=9% Similarity=-0.010 Sum_probs=120.3
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC 198 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~ 198 (310)
.-|.++++++.+|.+..++|+++||+..+++++++.|++..++.+++.++.+++++++|+..+++++..+|+++......
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999998866655
Q ss_pred eehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHH
Q 021611 199 FLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHI 278 (310)
Q Consensus 199 ~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~ 278 (310)
+.++.++|++++|.+.+.++.. ..++...++..+|.++...|+.++|...|
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~-----------------------------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSR-----------------------------QHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHh-----------------------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5566678888888877775311 23455667788999999999999999999
Q ss_pred HHhhcC
Q 021611 279 LAACES 284 (310)
Q Consensus 279 ~kAl~~ 284 (310)
++|++.
T Consensus 212 ~~a~~~ 217 (694)
T PRK15179 212 QAGLDA 217 (694)
T ss_pred HHHHHh
Confidence 999984
No 36
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.24 E-value=2.8e-12 Score=113.97 Aligned_cols=112 Identities=11% Similarity=0.044 Sum_probs=99.7
Q ss_pred cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccch-hhhhh--hhhhhhhh
Q 021611 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSL-YYLDR--FEEGAEQF 181 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~-~~lg~--~~eA~~~f 181 (310)
.++...+.+++. .+|+++.+|+.+|.++...|++++|+..|++|++++|+++..+.++|.++ ...|+ +++|.+.+
T Consensus 56 ~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 56 EAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 456677778888 99999999999999999999999999999999999999999999999986 67788 59999999
Q ss_pred hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
+++++++|+++.+....+....+.|++++|+..+.++
T Consensus 134 ~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 134 DKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999986655555556899999999998874
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.1e-11 Score=118.15 Aligned_cols=177 Identities=14% Similarity=0.195 Sum_probs=139.7
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
.-..|...|.+++. +||+...+|.-+|.=|..+++-..|++.|++|++++|.+..+|+.+|.+|..++-..=|+-.|+
T Consensus 345 eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 345 EHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred hHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 34457777778887 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcC--CC-hhhHHHHHHhhcCCCChHHHHHHhc--------CC
Q 021611 183 IDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGR--DP-RPVMREAYNMFKGGGDPEKLVAAFS--------SG 249 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~--d~-~~~~~~a~~l~~~~~~~e~al~~~~--------~~ 249 (310)
+|+++.|+|+. .|..++.- ++++.+||+.++.++-. |. ...+..+..++...++.++|...+. .+
T Consensus 423 kA~~~kPnDsR--lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg 500 (559)
T KOG1155|consen 423 KALELKPNDSR--LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEG 500 (559)
T ss_pred HHHhcCCCchH--HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Confidence 99999999987 67666554 89999999999988432 22 1222223334554555666544432 11
Q ss_pred -CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 250 -RENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 250 -~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
..++...+..+++.++...+++++|..+..+++.
T Consensus 501 ~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 501 EIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 2334667788899999999999999998888887
No 38
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.22 E-value=6.3e-12 Score=103.10 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=97.5
Q ss_pred hhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccC
Q 021611 109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188 (310)
Q Consensus 109 ~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~ 188 (310)
..+.+++. ++|+++.+.+.+|..++..|++++|++.|+++++++|+++.+++.+|.++...|++++|+..|+++++++
T Consensus 4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34667887 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 189 PNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 189 P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
|+++..+.+.+.+....|++++|...+.++
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 998886555555566889999999888763
No 39
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.21 E-value=2.1e-11 Score=109.52 Aligned_cols=167 Identities=16% Similarity=0.074 Sum_probs=122.7
Q ss_pred hhcccchhhhhhhhcCCCCchhHH---HHHHHhhhhheeccccccchhhhhhccccCcchhh---HHHhhccchhhh---
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREA---VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA---YLWQRGLSLYYL--- 171 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~---~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~---a~~~~G~a~~~l--- 171 (310)
.+.+.+|...+.+++. .+|+++ .+++.+|.++...|++++|++.|+++++.+|+++. +++.+|.+++..
T Consensus 46 ~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~ 123 (235)
T TIGR03302 46 SGDYTEAIKYFEALES--RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDR 123 (235)
T ss_pred cCCHHHHHHHHHHHHH--hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccc
Confidence 3456778888998888 888765 68999999999999999999999999999998876 789999999876
Q ss_pred -----hhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHh
Q 021611 172 -----DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAF 246 (310)
Q Consensus 172 -----g~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~ 246 (310)
|++++|++.|+++++.+|++... +..+ ..++......... ....+. ++...|++++++..+
T Consensus 124 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~--~~a~--~~~~~~~~~~~~~---------~~~~a~-~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 124 VDRDQTAAREAFEAFQELIRRYPNSEYA--PDAK--KRMDYLRNRLAGK---------ELYVAR-FYLKRGAYVAAINRF 189 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCCChhH--HHHH--HHHHHHHHHHHHH---------HHHHHH-HHHHcCChHHHHHHH
Confidence 99999999999999999987642 2111 1111111111000 011122 233467777776665
Q ss_pred cCC----C-CcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 247 SSG----R-ENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 247 ~~~----~-~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
... + .+....+++.+|.++..+|++++|..+++....
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 421 1 344567888999999999999999998887765
No 40
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=5.9e-11 Score=117.44 Aligned_cols=205 Identities=13% Similarity=0.101 Sum_probs=152.7
Q ss_pred chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
+.|..++|.-++.+++. .+|.++++|..+|.+....++-..||..+.+++++||++-.++..+|+.|.-.|.=.+|++
T Consensus 297 ~nG~L~~A~LafEAAVk--qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVK--QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHh--hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34467788888988998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCCc-----------------------------------------cceeeeehhh--hhcChHHHHHhHH
Q 021611 180 QFRIDVAQNPNDTE-----------------------------------------ESIWCFLCEA--QLYGVDEARNRFL 216 (310)
Q Consensus 180 ~f~~Al~l~P~d~~-----------------------------------------~~~~~~l~~a--~l~~~~eA~~~l~ 216 (310)
++++=++..|.... +.+...|+.. ..+.++.|+++|.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 99987665543211 0011111111 2256777777776
Q ss_pred HhcC---CChhhHHHHHHhhcCCCChHHHHHHhc--CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCC----
Q 021611 217 EVGR---DPRPVMREAYNMFKGGGDPEKLVAAFS--SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYG---- 287 (310)
Q Consensus 217 ~~~~---d~~~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~---- 287 (310)
.+.. .....|.++.+-+..+.+.++|+..+. ..++|....++|++|..+..+|.|++|..||-.||..+..
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~ 534 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNH 534 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccccc
Confidence 6433 233345566666666677778877776 3456777888888999888899999999999988875332
Q ss_pred CC----ChHHHHHHHHHhhcccC
Q 021611 288 QR----SDDYMAALAKVHSLCRN 306 (310)
Q Consensus 288 ~~----s~~~~~~la~~~~~~~~ 306 (310)
++ +...|-+|..++..+++
T Consensus 535 ~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 535 NKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred ccCCcchHHHHHHHHHHHHHcCC
Confidence 22 24566677777666553
No 41
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.19 E-value=3.6e-12 Score=122.90 Aligned_cols=101 Identities=17% Similarity=0.277 Sum_probs=93.3
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
.+.+|...|++++. ++|+++.+|++||.++..+|++++|+.++++|++++|+++.+|+.+|.+++.+|+|++|+..|+
T Consensus 17 ~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 17 DFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 56679999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccceeeeehhhhh
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQL 205 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l 205 (310)
++++++|+++....|...|..++
T Consensus 95 ~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 95 KGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999998767665554433
No 42
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.18 E-value=1.4e-11 Score=105.02 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=95.9
Q ss_pred CCc-hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccce
Q 021611 118 NNN-SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESI 196 (310)
Q Consensus 118 ~~~-P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~ 196 (310)
+++ |+.-+..|.+|..+...|++++|...|+....+||.+..+|+++|.++..+|+|++|++.|.+|+.++|+|++++.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 478 8999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eeeehhhhhcChHHHHHhHHHh
Q 021611 197 WCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 197 ~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
+.+.|...+|+.++|++.|..+
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888999999999998864
No 43
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.17 E-value=1e-10 Score=123.06 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=100.3
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...+|..+|.+++. .+|..+.++..+|.++..+|++++|++.|+++++++|+++.++..+|.++...|++++|+..++
T Consensus 30 ~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 30 QDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred CHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45678899998887 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
++++.+|+++. +...+.+....|+.++|+..+.++
T Consensus 108 ~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~a 142 (765)
T PRK10049 108 QLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQA 142 (765)
T ss_pred HHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999987 443333444789999999988763
No 44
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=9.8e-11 Score=104.97 Aligned_cols=181 Identities=17% Similarity=0.104 Sum_probs=133.6
Q ss_pred chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
+.+....|....++++. .+|+++.+|..|+.+|..+|+.+-|-+.|++|+.++|++...++|-|.-+...|+|++|..
T Consensus 47 ~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q 124 (250)
T COG3063 47 QQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQ 124 (250)
T ss_pred HCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHH
Confidence 33455567888889998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCCc---cceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC-CCCc
Q 021611 180 QFRIDVAQNPNDTE---ESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS-GREN 252 (310)
Q Consensus 180 ~f~~Al~l~P~d~~---~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~-~~~~ 252 (310)
.|++|+. +|...+ .+-+.++|..+.|+.+.|...+.+. +++..+.......+....|++-.|...++. ....
T Consensus 125 ~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 125 QFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred HHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 9999995 565543 3345566777899999999988763 333333322222233335566666555442 1111
Q ss_pred chhHhhhhhhh-hhhhccchhhHHHHHHHhhc
Q 021611 253 EYFYASLYAGL-FYESQKKADAAKLHILAACE 283 (310)
Q Consensus 253 d~~~a~~~lG~-~~~~~G~~d~A~~~~~kAl~ 283 (310)
...-..++||. +-...|+-+.|-++=.+-.+
T Consensus 204 ~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 204 GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 12223456776 66778888888777666655
No 45
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=3.6e-11 Score=111.25 Aligned_cols=117 Identities=22% Similarity=0.270 Sum_probs=95.7
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 203 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a 203 (310)
++-.-.-|.-+...++|++|+..|++||+++|+++.+|-+|+-+|.++|.|+.|+++.+.|+++||++..
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk---------- 150 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK---------- 150 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH----------
Confidence 5667788999999999999999999999999999999999999999999999999999999999995432
Q ss_pred hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 204 QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 204 ~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
++.-+|++|..+|++++|++.|++||+
T Consensus 151 -----------------------------------------------------ay~RLG~A~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 151 -----------------------------------------------------AYGRLGLAYLALGKYEEAIEAYKKALE 177 (304)
T ss_pred -----------------------------------------------------HHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence 222477777778888888888888888
Q ss_pred CCCCCCChHHHHHHHHHhhccc
Q 021611 284 SPYGQRSDDYMAALAKVHSLCR 305 (310)
Q Consensus 284 ~~~~~~s~~~~~~la~~~~~~~ 305 (310)
+... ++.|.-+|..+.-..+
T Consensus 178 ldP~--Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 178 LDPD--NESYKSNLKIAEQKLN 197 (304)
T ss_pred cCCC--cHHHHHHHHHHHHHhc
Confidence 5543 4466667765554443
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=9e-11 Score=113.81 Aligned_cols=180 Identities=17% Similarity=0.096 Sum_probs=137.5
Q ss_pred HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh--
Q 021611 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA-- 203 (310)
Q Consensus 126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a-- 203 (310)
..---|+-|...++++.|+..|.+|++|||+...+|.-+|.=+..+.+-..|++.|++|++++|.|-. +|+++|.+
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR--AWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR--AWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH--HHhhhhHHHH
Confidence 33345677778899999999999999999999999999999999999999999999999999998876 79999887
Q ss_pred hhcChHHHHHhHHHhcC----CChhhHHHHHHhhcCCCChHHHHHHhcCCCCcc--hhHhhhhhhhhhhhccchhhHHHH
Q 021611 204 QLYGVDEARNRFLEVGR----DPRPVMREAYNMFKGGGDPEKLVAAFSSGRENE--YFYASLYAGLFYESQKKADAAKLH 277 (310)
Q Consensus 204 ~l~~~~eA~~~l~~~~~----d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d--~~~a~~~lG~~~~~~G~~d~A~~~ 277 (310)
-++.+.-|+-.++++.. |++- +..+..-+...++.++|++++....... ...+...+|.+|+.+++.++|-.+
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRl-w~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRL-WVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 57778888888877532 3332 2223334556778899999987433222 235677799999999999999999
Q ss_pred HHHhhcC--CCCCCCh---HHHHHHHHHhhcccCCc
Q 021611 278 ILAACES--PYGQRSD---DYMAALAKVHSLCRNWS 308 (310)
Q Consensus 278 ~~kAl~~--~~~~~s~---~~~~~la~~~~~~~~~~ 308 (310)
|.+.++. ..|..++ ....=||....++++|.
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~ 524 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFD 524 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchH
Confidence 9999882 2233222 22223688888888874
No 47
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.11 E-value=1.6e-11 Score=88.83 Aligned_cols=65 Identities=23% Similarity=0.453 Sum_probs=60.9
Q ss_pred HHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 128 ~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~ 192 (310)
+.+|..++..|++++|++.|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999874
No 48
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.11 E-value=5.3e-11 Score=105.74 Aligned_cols=122 Identities=9% Similarity=-0.037 Sum_probs=94.6
Q ss_pred eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh-hhhcC--hHHHH
Q 021611 136 RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE-AQLYG--VDEAR 212 (310)
Q Consensus 136 ~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~-a~l~~--~~eA~ 212 (310)
..++.++++..+.++++.+|++..+|..+|.++...|++++|+..|+++++++|+++..+...+.+. ...|+ .++|.
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3678899999999999999999999999999999999999999999999999999987433222111 12233 24444
Q ss_pred HhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCC
Q 021611 213 NRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPY 286 (310)
Q Consensus 213 ~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~ 286 (310)
..+.++ ...+|+...+++.+|..+..+|++++|+.+|++++++..
T Consensus 131 ~~l~~a-----------------------------l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 131 EMIDKA-----------------------------LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHH-----------------------------HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 433321 113345566788999999999999999999999999543
No 49
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.06 E-value=4.5e-10 Score=106.44 Aligned_cols=187 Identities=11% Similarity=-0.031 Sum_probs=104.8
Q ss_pred chhHHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccce
Q 021611 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESI 196 (310)
Q Consensus 120 ~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~ 196 (310)
+|+++.+|..+|..+...|++++|...+.++.+..|.+ ....+.+|.++...|++++|++.++++++.+|++.....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 67777777777777777777777777777777776643 344556777777777777777777777777777664322
Q ss_pred eeeehhhh----hcChHHHHHhHHHhcC-CChhhHH--HHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhh
Q 021611 197 WCFLCEAQ----LYGVDEARNRFLEVGR-DPRPVMR--EAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYES 267 (310)
Q Consensus 197 ~~~l~~a~----l~~~~eA~~~l~~~~~-d~~~~~~--~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~ 267 (310)
. .+.... .+...++...+....+ .+..... .....+...|++++++..+.. ...|+...++..+|.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 1 111111 2223333333322212 1211111 111223345666666655542 2334445556667777777
Q ss_pred ccchhhHHHHHHHhhcCCCCC--CChHHHHHHHHHhhcccCC
Q 021611 268 QKKADAAKLHILAACESPYGQ--RSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 268 ~G~~d~A~~~~~kAl~~~~~~--~s~~~~~~la~~~~~~~~~ 307 (310)
+|++++|+.+++++++..... .....++.++..+..+|++
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 777777777777777632111 1112345667777777765
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.05 E-value=1.3e-10 Score=107.50 Aligned_cols=195 Identities=16% Similarity=0.109 Sum_probs=76.6
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
.+.+...|.+++. .+|.++..+..++.. ...|++++|+..+.++.+..+ ++..+.....++...|+++++.+.+++
T Consensus 60 ~~~A~~ay~~l~~--~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 60 YDEAIEAYEKLLA--SDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred ccccccccccccc--ccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 4456666666666 666666666666666 577777777777777776554 344555556666777777777777777
Q ss_pred hhccC--CCCCccceeeeehhh--hhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhc---CCCCcc
Q 021611 184 DVAQN--PNDTEESIWCFLCEA--QLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFS---SGRENE 253 (310)
Q Consensus 184 Al~l~--P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~---~~~~~d 253 (310)
+.... |+++ .+|..++.. +.|+.++|+..+.++ .|+..........++...|+.+++.+.+. ... ++
T Consensus 136 ~~~~~~~~~~~--~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~ 212 (280)
T PF13429_consen 136 LEELPAAPDSA--RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PD 212 (280)
T ss_dssp HHH-T---T-H--HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HT
T ss_pred HHhccCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cC
Confidence 66544 3333 244444433 567788888777653 34333333223334445566666444332 111 12
Q ss_pred hhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 254 YFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 254 ~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
....+..+|.++..+|++++|+.+|+++++.. +.++..+..+|.++...|+.
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHhcccccccccccccccccccc--cccccccccccccccccccc
Confidence 22234468889999999999999999999833 45677778889999888864
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.04 E-value=7.8e-10 Score=108.00 Aligned_cols=198 Identities=13% Similarity=0.042 Sum_probs=138.6
Q ss_pred cccchhhhhhhhcCCCCchhHHHHH-HHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVA-IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~-~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
....+...+.++.. .+|++..+. ...+.++...|++++|++.++++++.+|+++.++..++.++...|+|++|++.+
T Consensus 133 ~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l 210 (398)
T PRK10747 133 DEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDIL 210 (398)
T ss_pred CHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45667788888877 788875443 345899999999999999999999999999999999999999999999999777
Q ss_pred hhhhccCCCCCc------------------------------------------cceeeeehhhhhcChHHHHHhHHHhc
Q 021611 182 RIDVAQNPNDTE------------------------------------------ESIWCFLCEAQLYGVDEARNRFLEVG 219 (310)
Q Consensus 182 ~~Al~l~P~d~~------------------------------------------~~~~~~l~~a~l~~~~eA~~~l~~~~ 219 (310)
.+..+..+.++. ...-+.......|+.++|...+.+..
T Consensus 211 ~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 211 PSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGL 290 (398)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 776655443221 11111111124566777777666533
Q ss_pred CC-ChhhHHHHHHhhcCCCChHHHHHHhc--CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHH
Q 021611 220 RD-PRPVMREAYNMFKGGGDPEKLVAAFS--SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAA 296 (310)
Q Consensus 220 ~d-~~~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~ 296 (310)
+. +.+....++.... .++++++++.++ ....|+....++.+|.++..+|++++|+++|+++++.. +.+.+ ...
T Consensus 291 ~~~~~~~l~~l~~~l~-~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~-~~~ 366 (398)
T PRK10747 291 KRQYDERLVLLIPRLK-TNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYD-YAW 366 (398)
T ss_pred hcCCCHHHHHHHhhcc-CCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH-HHH
Confidence 32 2222222333332 366777766664 23456666778889999999999999999999999954 23333 357
Q ss_pred HHHHhhcccC
Q 021611 297 LAKVHSLCRN 306 (310)
Q Consensus 297 la~~~~~~~~ 306 (310)
++.++.++|+
T Consensus 367 La~~~~~~g~ 376 (398)
T PRK10747 367 LADALDRLHK 376 (398)
T ss_pred HHHHHHHcCC
Confidence 8888888775
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.8e-10 Score=110.87 Aligned_cols=73 Identities=16% Similarity=0.107 Sum_probs=39.9
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND 191 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d 191 (310)
..|+.+..|+..|.-|...|++++|...|.|+..+||.+..+|...|.++...|+.|+|+.+|.+|-++-|..
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~ 379 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC 379 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence 5555555555555555555555555555555555555555555555555555555555555555554444443
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.02 E-value=5.2e-11 Score=110.17 Aligned_cols=174 Identities=16% Similarity=0.099 Sum_probs=79.0
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccC--cchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD--PRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~--P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
..+|..+..+... . +.++..+.....++...|+++++.+.++++.+.. |.++..|..+|.++.+.|++++|+++|
T Consensus 93 ~~~A~~~~~~~~~--~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYE--R-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccc--c-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445444444332 2 2345666666777778888888888888876655 566777778888888888888888888
Q ss_pred hhhhccCCCCCccceeeeehh--hhhcChHHHHHhH---HHhc-CCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcc
Q 021611 182 RIDVAQNPNDTEESIWCFLCE--AQLYGVDEARNRF---LEVG-RDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENE 253 (310)
Q Consensus 182 ~~Al~l~P~d~~~~~~~~l~~--a~l~~~~eA~~~l---~~~~-~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d 253 (310)
+++++++|+|+.. +..++. ...|+.+++...+ .+.. .++.-....+. .+...|++++|+..+... .+|+
T Consensus 170 ~~al~~~P~~~~~--~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~-~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALELDPDDPDA--RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA-AYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH-TT-HHH--HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH-HHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCCCCHHH--HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH-Hhcccccccccccccccccccccc
Confidence 8888888887763 333332 2456666644443 3332 23332222222 223346777777777532 3455
Q ss_pred hhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 254 YFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 254 ~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
+.......|.++...|+.++|.+.++++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 666677899999999999999999999987
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=6.2e-10 Score=110.09 Aligned_cols=179 Identities=13% Similarity=0.060 Sum_probs=146.4
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
.++|...+.++.. +||....+|...|+.+.-.|..++|+.+|.+|-++-|+.....+..|.=+.+++.++-|...|.+
T Consensus 328 ~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 328 YSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred cHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 4567777888887 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhc-------CC---ChhhHHHHHHhhcCCCChHHHHHHhcC--C
Q 021611 184 DVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVG-------RD---PRPVMREAYNMFKGGGDPEKLVAAFSS--G 249 (310)
Q Consensus 184 Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~-------~d---~~~~~~~a~~l~~~~~~~e~al~~~~~--~ 249 (310)
|+.+.|+||-. ...++-. ..+.+.+|...|+.+. +. ..|.+..+...+...+.+++|+..+.. .
T Consensus 406 A~ai~P~Dplv--~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 406 ALAIAPSDPLV--LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHhcCCCcchh--hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999853 3333332 5677899988876632 11 123344455556667788888887763 3
Q ss_pred CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCC
Q 021611 250 RENEYFYASLYAGLFYESQKKADAAKLHILAACESPY 286 (310)
Q Consensus 250 ~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~ 286 (310)
..+.....|-.+|++|.-+|+++.|+++|.+|+.+..
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 4566677788899999999999999999999999654
No 55
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.01 E-value=1.2e-10 Score=120.78 Aligned_cols=116 Identities=11% Similarity=-0.029 Sum_probs=106.7
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.+..+++...|..+++ +.|++..++.++++++.+++++++|+..++++++.+|++..+++.+|.++..+|++++|++.
T Consensus 99 ~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred cCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 3467889999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
|+++++.+|+++.++.+++.++...|+.++|...+.++
T Consensus 177 y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 177 FERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988886665555555789999999998875
No 56
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.01 E-value=6.8e-11 Score=100.86 Aligned_cols=89 Identities=10% Similarity=0.023 Sum_probs=82.5
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
+-+.+|..+|..+.. ++|.++..|+++|.++..+|+|++|++.|.+|+.++|+++.++++.|.+++.+|+.++|.+.|
T Consensus 49 G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF 126 (157)
T PRK15363 49 KEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKAL 126 (157)
T ss_pred CCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 356779899988887 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCC
Q 021611 182 RIDVAQNPNDT 192 (310)
Q Consensus 182 ~~Al~l~P~d~ 192 (310)
+.++...-..+
T Consensus 127 ~~Ai~~~~~~~ 137 (157)
T PRK15363 127 KAVVRICGEVS 137 (157)
T ss_pred HHHHHHhccCh
Confidence 99999874333
No 57
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.98 E-value=1.1e-10 Score=95.67 Aligned_cols=89 Identities=10% Similarity=0.095 Sum_probs=84.5
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...+|...+.+++. ++|+++.+|+.+|.++..+|++++|+..|+++++++|+++..++.+|.++...|++++|+..|+
T Consensus 32 ~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 32 RYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred cHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45678888988888 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCc
Q 021611 183 IDVAQNPNDTE 193 (310)
Q Consensus 183 ~Al~l~P~d~~ 193 (310)
++++++|++..
T Consensus 110 ~al~~~p~~~~ 120 (135)
T TIGR02552 110 LAIEICGENPE 120 (135)
T ss_pred HHHHhccccch
Confidence 99999998865
No 58
>PLN02789 farnesyltranstransferase
Probab=98.96 E-value=2.5e-09 Score=101.86 Aligned_cols=181 Identities=12% Similarity=-0.009 Sum_probs=129.4
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhh-hhhhhhhhhhhhhccCCCCCcccee
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD-RFEEGAEQFRIDVAQNPNDTEESIW 197 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg-~~~eA~~~f~~Al~l~P~d~~~~~~ 197 (310)
..|+..+++-.+-.++...+++++|+..++++|+++|++..+|..||.++..+| +++++++.++++++.+|++..+ |
T Consensus 32 y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa--W 109 (320)
T PLN02789 32 YTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI--W 109 (320)
T ss_pred eCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH--h
Confidence 566777777666666788899999999999999999999999999999999999 6899999999999999999874 5
Q ss_pred eeeh--hhhhcCh--HHHHHhHHHh-cCCChh--hHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhc
Q 021611 198 CFLC--EAQLYGV--DEARNRFLEV-GRDPRP--VMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQ 268 (310)
Q Consensus 198 ~~l~--~a~l~~~--~eA~~~l~~~-~~d~~~--~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~ 268 (310)
.+.+ ..++++. ++++..+.++ ..+++. .+......+...++++++++.+.. ..++....++.++|.+....
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 5443 3356652 5555655442 234443 333222234445678888877753 23455677888899887665
Q ss_pred ---cch----hhHHHHHHHhhcCCCCCCChHHHHHHHHHhhc
Q 021611 269 ---KKA----DAAKLHILAACESPYGQRSDDYMAALAKVHSL 303 (310)
Q Consensus 269 ---G~~----d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~ 303 (310)
|.. ++++.+..++|++... +...|..++-++..
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P~--N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANPR--NESPWRYLRGLFKD 229 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCCC--CcCHHHHHHHHHhc
Confidence 333 5788888899996543 33566666665554
No 59
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.96 E-value=1.5e-09 Score=98.86 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=55.3
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC 198 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~ 198 (310)
-+|.+...+...|...++.|+|.+|+..|.|+.+++|+++.+|..+|.+|-+.||+++|...|.+++++.|+++.+..+.
T Consensus 95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNl 174 (257)
T COG5010 95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNL 174 (257)
T ss_pred cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhH
Confidence 34555555555666666666666666666666666666666666666666666666666666666666666655532222
Q ss_pred eehhhhhcChHHHHHhHHH
Q 021611 199 FLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 199 ~l~~a~l~~~~eA~~~l~~ 217 (310)
++...-.|+.+.|...+.+
T Consensus 175 gms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 2222233445555444443
No 60
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.6e-10 Score=113.61 Aligned_cols=100 Identities=16% Similarity=0.263 Sum_probs=73.9
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.+.++.|...|+++|. .+|+|+..|.+|+.+|..+|.+.+|+.|.+++|+++|++..+|...|.++..+.+|++|++.
T Consensus 371 ~gdy~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred ccCHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677777777776 77777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhhhhccCCCCCccceeeeehh
Q 021611 181 FRIDVAQNPNDTEESIWCFLCE 202 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~~l~~ 202 (310)
|+++++.||++.+..-|+..|.
T Consensus 449 y~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 449 YQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHHHHhcCchhHHHHHHHHHHH
Confidence 7777777777766444443333
No 61
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.95 E-value=1.2e-09 Score=113.37 Aligned_cols=197 Identities=12% Similarity=0.100 Sum_probs=140.9
Q ss_pred cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch-hhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
..|...|...+. .+|+|..+++.++.+.+..|+|-+|+..|.+++.++|.. +.....+|.++..+|+-+.|+..|.+
T Consensus 147 ~~A~a~F~~Vl~--~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 147 DDADAQFHFVLK--QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHh--hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 346666777777 999999999999999999999999999999999999987 67888999999999999999999999
Q ss_pred hhccCCCCCccceeeeehhhhh-----cChHHHHHhHHHh---cC-CChhhHHHHHHhhcCCCChHHHHHHhc----CC-
Q 021611 184 DVAQNPNDTEESIWCFLCEAQL-----YGVDEARNRFLEV---GR-DPRPVMREAYNMFKGGGDPEKLVAAFS----SG- 249 (310)
Q Consensus 184 Al~l~P~d~~~~~~~~l~~a~l-----~~~~eA~~~l~~~---~~-d~~~~~~~a~~l~~~~~~~e~al~~~~----~~- 249 (310)
++++||.+..+ ..+|+...+ ..+..+...+.++ .+ +|...+ .+..+|--.++++.+..... ..
T Consensus 225 alqLdp~~v~a--lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~-~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 225 ALQLDPTCVSA--LVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALN-HLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHhcChhhHHH--HHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHH-HHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 99999987763 344444422 2234444444432 22 343333 23233434567777655443 11
Q ss_pred CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 250 RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 250 ~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
..+-.....|++|..|..+|++++|..+|-++++...+.. .--.++||.+++..|..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~-~l~~~GlgQm~i~~~dl 358 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF-VLPLVGLGQMYIKRGDL 358 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc-cccccchhHHHHHhchH
Confidence 1222445677899999999999999999999998543321 12234778887777653
No 62
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.89 E-value=7.3e-09 Score=94.36 Aligned_cols=196 Identities=19% Similarity=0.152 Sum_probs=147.5
Q ss_pred hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
+...|-+... .+|++..+ .++...+...|+-+.++....++..-+|.+...+...|+.++..|+|.+|+..|+++.+
T Consensus 52 a~~al~~~~~--~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 52 AAAALGAAVL--RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred HHHHHHHHHh--cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 3344444555 89999999 99999999999999999999999999999988888899999999999999999999999
Q ss_pred cCCCCCccceeeeehhhhhcChHHHHHhHHHh---cC-CChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhh
Q 021611 187 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GR-DPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLY 260 (310)
Q Consensus 187 l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~-d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~ 260 (310)
++|+|.+.+.-.+.++.++|+.++|+..+.++ .+ +|.+..+.++.++. .|+.++|.+.+.. ...+......-+
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~A~~lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLEDAETLLLPAYLSPAADSRVRQN 207 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence 99999985444444455999999999987663 22 45554445554443 6788888877752 122223333447
Q ss_pred hhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCcC
Q 021611 261 AGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWSS 309 (310)
Q Consensus 261 lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~~ 309 (310)
+.++.-.+|++++|+..-.+=+... +. .+...-|..+.-+.+.|..
T Consensus 208 LAl~~~~~g~~~~A~~i~~~e~~~~--~~-~~~~~~l~~~~~~~~~~~~ 253 (257)
T COG5010 208 LALVVGLQGDFREAEDIAVQELLSE--QA-ANNVAALRAAASQSGAWTQ 253 (257)
T ss_pred HHHHHhhcCChHHHHhhccccccch--hH-hhHHHHHHHhhcccchhHH
Confidence 8888889999999999888777632 22 2344466777777777753
No 63
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.87 E-value=6.1e-10 Score=108.84 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=67.4
Q ss_pred CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhH---HHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAY---LWQRGLSLYYLDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a---~~~~G~a~~~lg~~~eA~~~f~~Al~l 187 (310)
.-+|+++.+|+++|.+|+.+|+|++|++.|++||+++|++..+ |+++|.+|..+|++++|++++++|+++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999854 999999999999999999999999998
No 64
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.86 E-value=1.1e-08 Score=108.29 Aligned_cols=183 Identities=9% Similarity=-0.031 Sum_probs=127.8
Q ss_pred CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW 197 (310)
Q Consensus 118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~ 197 (310)
-..|+.+...+..+.+..+.|++++|++.|+++++.+|+++.+...+..++...|++++|+..+++++ +|++......
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~l 105 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGL 105 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHH
Confidence 37888999999999999999999999999999999999986555578888888899999999999999 5554443333
Q ss_pred eeeh--hhhhcChHHHHHhHHHhc---CCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccc
Q 021611 198 CFLC--EAQLYGVDEARNRFLEVG---RDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKK 270 (310)
Q Consensus 198 ~~l~--~a~l~~~~eA~~~l~~~~---~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~ 270 (310)
..++ ....|++++|++.+.++. |+....+......+...++.++|+..+... ..++... ...++.++..+++
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-~l~layL~~~~~~ 184 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-YMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-HHHHHHHHHhcch
Confidence 3222 235688999999887743 332233322234455667888888877632 2333222 1334555555777
Q ss_pred hhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611 271 ADAAKLHILAACESPYGQRSDDYMAALAKVHSLCR 305 (310)
Q Consensus 271 ~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~ 305 (310)
..+|+..|+++++.. +.+.+++..+..++...|
T Consensus 185 ~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 185 NYDALQASSEAVRLA--PTSEEVLKNHLEILQRNR 217 (822)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 777999999999954 345577777666655544
No 65
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.85 E-value=7e-09 Score=107.10 Aligned_cols=48 Identities=13% Similarity=-0.110 Sum_probs=41.7
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 257 ASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 257 a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
.|+.+|.||..+|.+++|+..|.+++.+.. ...|....|+.++.++|+
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p--~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILAP--DNLDARITLASLYQQLGN 498 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CchhhhhhHHHHHHhcCC
Confidence 455699999999999999999999999664 466899999999999886
No 66
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.82 E-value=1.2e-09 Score=105.38 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=84.2
Q ss_pred HHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhc
Q 021611 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY 206 (310)
Q Consensus 127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~ 206 (310)
+...|..++..|+|++|++.|++||+++|+++.+++++|.++..+|++++|+.+++++++++|+++.++..++.+..++|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999999999999999999999999999999999999999887666666666899
Q ss_pred ChHHHHHhHHHh
Q 021611 207 GVDEARNRFLEV 218 (310)
Q Consensus 207 ~~~eA~~~l~~~ 218 (310)
++++|+..+.++
T Consensus 85 ~~~eA~~~~~~a 96 (356)
T PLN03088 85 EYQTAKAALEKG 96 (356)
T ss_pred CHHHHHHHHHHH
Confidence 999999988763
No 67
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=6.1e-09 Score=100.05 Aligned_cols=136 Identities=17% Similarity=0.237 Sum_probs=88.7
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhh------------HHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA------------YLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~------------a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
+++.+.++.+.||.++...++.+.|+.+|+++++++|+... .+-.+|.-.++.|+|.+|.++|..+|.
T Consensus 198 ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 198 LDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred cccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 67777777777777777777777777777777777775432 344667777777777777777777777
Q ss_pred cCCCCCccceeee----ehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhh
Q 021611 187 QNPNDTEESIWCF----LCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLY 260 (310)
Q Consensus 187 l~P~d~~~~~~~~----l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~ 260 (310)
++|++....+..+ ++..++|+..+| +..+... .++..-.++..
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~ea-------------------------------isdc~~Al~iD~syikall~ 326 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREA-------------------------------ISDCNEALKIDSSYIKALLR 326 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhh-------------------------------hhhhhhhhhcCHHHHHHHHH
Confidence 7776654322221 111234444444 4433322 22334445666
Q ss_pred hhhhhhhccchhhHHHHHHHhhcCC
Q 021611 261 AGLFYESQKKADAAKLHILAACESP 285 (310)
Q Consensus 261 lG~~~~~~G~~d~A~~~~~kAl~~~ 285 (310)
.|.++..++++++|.+.|++|+++.
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999954
No 68
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=2.2e-09 Score=106.47 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=99.2
Q ss_pred cccchhhhhhhhcCCCCch--hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNS--REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P--~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.+.+...+|-.+-. .+| .+|+++..+|.+|...|+|+.|+.+|+.||+.+|++...|+.+|-++.--.+.+|||..
T Consensus 409 ~l~~i~~~fLeaa~--~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 409 HLAHIQELFLEAAR--QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHH--hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHH
Confidence 44456666766655 677 78999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
|++|+++.|++..+.++.+.+...+|.++||...++.+
T Consensus 487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999886555555555889999999988763
No 69
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.80 E-value=2.4e-09 Score=78.28 Aligned_cols=92 Identities=22% Similarity=0.370 Sum_probs=72.5
Q ss_pred HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhh
Q 021611 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL 205 (310)
Q Consensus 126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l 205 (310)
+++.+|.++...|++++|+..|+++++..|+++.+++.+|.++...|++++|++.|++++++.|.+.........+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57888888889999999999999999999988888888999999999999999999999998888764322222233356
Q ss_pred cChHHHHHhHHH
Q 021611 206 YGVDEARNRFLE 217 (310)
Q Consensus 206 ~~~~eA~~~l~~ 217 (310)
|++++|...+.+
T Consensus 82 ~~~~~a~~~~~~ 93 (100)
T cd00189 82 GKYEEALEAYEK 93 (100)
T ss_pred HhHHHHHHHHHH
Confidence 677777766655
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=2.8e-08 Score=93.42 Aligned_cols=182 Identities=10% Similarity=0.055 Sum_probs=141.6
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC 201 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~ 201 (310)
..++.+..+..+|.+...++.|+..|...+.-.|.+.......+.++..++++++|++.|+.+++++|.+.++.+..+-+
T Consensus 254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG 333 (478)
T ss_pred CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999987777666
Q ss_pred hhhhcChHHHHHhHHHhcC----CChhhHHHHH-HhhcCCCChHHHHHHh----cCCC-CcchhHhhhhhhhhhhhccch
Q 021611 202 EAQLYGVDEARNRFLEVGR----DPRPVMREAY-NMFKGGGDPEKLVAAF----SSGR-ENEYFYASLYAGLFYESQKKA 271 (310)
Q Consensus 202 ~a~l~~~~eA~~~l~~~~~----d~~~~~~~a~-~l~~~~~~~e~al~~~----~~~~-~~d~~~a~~~lG~~~~~~G~~ 271 (310)
...-++++-|...+.++.+ .|........ -++.++ ++=++..+ .... +......||++|.+....|++
T Consensus 334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ--~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~ 411 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ--IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF 411 (478)
T ss_pred cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc--hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch
Confidence 7778889999998777533 2332222222 234433 33333332 2222 333455788999999999999
Q ss_pred hhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 272 DAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 272 d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
..|.++|+-|+.++. ...+.+.|||.+..+-|+.
T Consensus 412 nlA~rcfrlaL~~d~--~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 412 NLAKRCFRLALTSDA--QHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHHHHHHHhccCc--chHHHHHhHHHHHhhcCch
Confidence 999999999999543 3347889999998888764
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.76 E-value=1.1e-08 Score=96.94 Aligned_cols=149 Identities=14% Similarity=0.058 Sum_probs=71.4
Q ss_pred cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhcc----ccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAI----ELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl----~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
+++..++.+++. .+|++..++.. +..++..|++.++.....+++ ..+|+...++..+|.++...|++++|++.
T Consensus 60 ~~A~~~~~~~l~--~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 136 (355)
T cd05804 60 PKALALLEQLLD--DYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEA 136 (355)
T ss_pred HHHHHHHHHHHH--HCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344455555554 55555554443 333333333333333333322 34444444444555555555555555555
Q ss_pred hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcch--hHhh
Q 021611 181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEY--FYAS 258 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~--~~a~ 258 (310)
++++++++|+++..+.....+..+.|++++|+..+.+..+ ..+.... ...+
T Consensus 137 ~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~---------------------------~~~~~~~~~~~~~ 189 (355)
T cd05804 137 ARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRD---------------------------TWDCSSMLRGHNW 189 (355)
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhh---------------------------ccCCCcchhHHHH
Confidence 5555555555543211111111234444444444433111 0010111 2234
Q ss_pred hhhhhhhhhccchhhHHHHHHHhhc
Q 021611 259 LYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 259 ~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
..+|.++..+|++++|+..|++++.
T Consensus 190 ~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 190 WHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4578888888888888888888875
No 72
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.75 E-value=1.8e-08 Score=98.65 Aligned_cols=197 Identities=15% Similarity=0.112 Sum_probs=105.6
Q ss_pred ccchhhhhhhhcCCCCchhHH-HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREA-VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~-~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...+...+.++.. ..|++. .+...++.+++..|++++|++.+++.++..|+++.++...|.++...|++++|++.+.
T Consensus 134 ~~~A~~~l~~a~~--~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~ 211 (409)
T TIGR00540 134 EARANQHLEEAAE--LAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIID 211 (409)
T ss_pred HHHHHHHHHHHHH--hCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4445555555544 444443 3444445555556666666666666666666665555556666666666665555555
Q ss_pred hhhcc--------------------------------------CCC----CCccceeeeehhhhhcChHHHHHhHHHhc-
Q 021611 183 IDVAQ--------------------------------------NPN----DTEESIWCFLCEAQLYGVDEARNRFLEVG- 219 (310)
Q Consensus 183 ~Al~l--------------------------------------~P~----d~~~~~~~~l~~a~l~~~~eA~~~l~~~~- 219 (310)
+..+. .|+ ++.............|++++|.+.+.+..
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 212 NMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 55543 331 22211111111124566777777665532
Q ss_pred --CCChhh---HHHHHHhhcCCCChHHHHHHhcC--CCCcchh--HhhhhhhhhhhhccchhhHHHHHHH--hhcCCCCC
Q 021611 220 --RDPRPV---MREAYNMFKGGGDPEKLVAAFSS--GRENEYF--YASLYAGLFYESQKKADAAKLHILA--ACESPYGQ 288 (310)
Q Consensus 220 --~d~~~~---~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~--~a~~~lG~~~~~~G~~d~A~~~~~k--Al~~~~~~ 288 (310)
++.... .-..+..+. .++.+++++.++. ...|+.. .....+|.++..+|++++|+++|++ +++.. +
T Consensus 292 ~~pd~~~~~~~~l~~~~~l~-~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~--p 368 (409)
T TIGR00540 292 KLGDDRAISLPLCLPIPRLK-PEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ--L 368 (409)
T ss_pred hCCCcccchhHHHHHhhhcC-CCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC--C
Confidence 222210 111121222 2455555555532 2233444 5566799999999999999999995 55532 3
Q ss_pred CChHHHHHHHHHhhcccC
Q 021611 289 RSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 289 ~s~~~~~~la~~~~~~~~ 306 (310)
.+.++ ..++.++.+.|+
T Consensus 369 ~~~~~-~~La~ll~~~g~ 385 (409)
T TIGR00540 369 DANDL-AMAADAFDQAGD 385 (409)
T ss_pred CHHHH-HHHHHHHHHcCC
Confidence 34444 488999888876
No 73
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.75 E-value=2.3e-09 Score=78.89 Aligned_cols=63 Identities=27% Similarity=0.505 Sum_probs=60.3
Q ss_pred hhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 131 G~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
..+++..+++++|++.++++++++|+++..++.+|.++..+|++++|+++|+++++.+|+++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 567899999999999999999999999999999999999999999999999999999998765
No 74
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.74 E-value=1.7e-08 Score=98.93 Aligned_cols=112 Identities=9% Similarity=0.003 Sum_probs=90.9
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh-hHHHhhccchhhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-AYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
+..|.....++.. ..|+....+...|.+...+|++++|.+.+.++.+..|+.. ......+.++...|++++|.+.++
T Consensus 100 ~~~A~~~l~~~~~--~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 100 YAKAEKLIAKNAD--HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred HHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4456665555555 7788888889999999999999999999999999999985 566667999999999999999999
Q ss_pred hhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~ 217 (310)
+.++.+|+++...........+.|++++|.+.+.+
T Consensus 178 ~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~ 212 (409)
T TIGR00540 178 KLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDN 212 (409)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999987544444444477888877776544
No 75
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=2.5e-08 Score=94.25 Aligned_cols=186 Identities=12% Similarity=0.121 Sum_probs=149.6
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC 198 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~ 198 (310)
-+|.+..-++.+|..++..|.+.+|+..|..|++.||++..+++.||.+|+.+|+-.-|+.++.+.+++.|++.-+...+
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999998877778
Q ss_pred eehhhhhcChHHHHHhHHHhcC-CChhh-HHHHH----------------HhhcCCCChHHHHHHhcCC--CCcchhHhh
Q 021611 199 FLCEAQLYGVDEARNRFLEVGR-DPRPV-MREAY----------------NMFKGGGDPEKLVAAFSSG--RENEYFYAS 258 (310)
Q Consensus 199 ~l~~a~l~~~~eA~~~l~~~~~-d~~~~-~~~a~----------------~l~~~~~~~e~al~~~~~~--~~~d~~~a~ 258 (310)
+..+.++|.+++|.++|..+.+ +|+.. ..+++ .-.-+.|+...++..+... ..+......
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 7777889999999999988643 22210 00110 0112345666666555422 344445555
Q ss_pred hhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 259 LYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 259 ~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
-+++.||...|+...|+..++.|-++.. .+-+.++.++.+++.-|+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~--DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQ--DNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccc--cchHHHHHHHHHHHhhhh
Confidence 5688999999999999999999999764 455888999999887765
No 76
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.72 E-value=9.6e-09 Score=88.63 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=78.2
Q ss_pred hhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCC
Q 021611 113 ALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189 (310)
Q Consensus 113 ~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P 189 (310)
..+....+|..+.+++.+|..+...|++++|+..|++++++.|+. ..++.++|.++..+|++++|+..++++++++|
T Consensus 24 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 24 KILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred HHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 334424566788899999999999999999999999999988764 46899999999999999999999999999999
Q ss_pred CCCccceeeeehhhhhcChHH
Q 021611 190 NDTEESIWCFLCEAQLYGVDE 210 (310)
Q Consensus 190 ~d~~~~~~~~l~~a~l~~~~e 210 (310)
++...+...+.+....|+...
T Consensus 104 ~~~~~~~~lg~~~~~~g~~~~ 124 (172)
T PRK02603 104 KQPSALNNIAVIYHKRGEKAE 124 (172)
T ss_pred ccHHHHHHHHHHHHHcCChHh
Confidence 887643333333334454333
No 77
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.70 E-value=2.6e-09 Score=81.28 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=65.7
Q ss_pred cccchhhhhhhhcCCCCchh--HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~--~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
....|..++++++. .+|. +...++.+|.+++++|+|++|+..+++ ++.+|.+...++.+|.+++.+|+|++|++.
T Consensus 4 ~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 4 NYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp -HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35568888888887 6663 677888899999999999999999999 888888888888889999999999999998
Q ss_pred hhhh
Q 021611 181 FRID 184 (310)
Q Consensus 181 f~~A 184 (310)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8875
No 78
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.70 E-value=6.6e-09 Score=75.88 Aligned_cols=86 Identities=20% Similarity=0.369 Sum_probs=80.1
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...++...+.+++. ..|+++.+++.+|.++...|++++|++.|++++++.|.+...++.+|.++...|++++|...++
T Consensus 15 ~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 92 (100)
T cd00189 15 DYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92 (100)
T ss_pred cHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45668888888887 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCC
Q 021611 183 IDVAQNPN 190 (310)
Q Consensus 183 ~Al~l~P~ 190 (310)
++++.+|+
T Consensus 93 ~~~~~~~~ 100 (100)
T cd00189 93 KALELDPN 100 (100)
T ss_pred HHHccCCC
Confidence 99999884
No 79
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.70 E-value=6.8e-09 Score=82.20 Aligned_cols=95 Identities=16% Similarity=0.271 Sum_probs=76.0
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc-cceeee
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE-ESIWCF 199 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~-~~~~~~ 199 (310)
+.+++.+|..+..+|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+..|++++..+|+++. ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 568889999999999999999999999999888642 223333
Q ss_pred ehh--hhhcChHHHHHhHHHh
Q 021611 200 LCE--AQLYGVDEARNRFLEV 218 (310)
Q Consensus 200 l~~--a~l~~~~eA~~~l~~~ 218 (310)
++. ..++++++|...+.++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHH
Confidence 333 3677888888777653
No 80
>PRK15331 chaperone protein SicA; Provisional
Probab=98.67 E-value=2.6e-08 Score=85.53 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=97.7
Q ss_pred CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW 197 (310)
Q Consensus 118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~ 197 (310)
.+.++.-+..+..|--++.+|++++|...|.-...++|.++.+++.+|.++..+++|++|+..|..|..++++||.+.++
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 47888889999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eeehhhhhcChHHHHHhHHHhcCC
Q 021611 198 CFLCEAQLYGVDEARNRFLEVGRD 221 (310)
Q Consensus 198 ~~l~~a~l~~~~eA~~~l~~~~~d 221 (310)
.+-|...+|+.++|+.+|..+...
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 888999999999999999876543
No 81
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.8e-09 Score=101.21 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=100.5
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
....+...+....- ++|.-+.--...|..++..|+|.+|+.+|++||+.+|+++..|-||+.+|..+|.+.+|+.+.+
T Consensus 339 ~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~ 416 (539)
T KOG0548|consen 339 EAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAK 416 (539)
T ss_pred HHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555666655555 8898888889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
++++++|++..+++..+.++..+.+++.|.+.+.+.
T Consensus 417 ~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 417 KCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887777766666788999999988763
No 82
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=1e-07 Score=92.84 Aligned_cols=197 Identities=14% Similarity=0.117 Sum_probs=139.5
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
+.++...-|.++. ++-.++.+..+.|++-+..|+++.|.+.|.+|+.-+..-.+++++.|+.+..+|++++|+++|-+
T Consensus 472 ~~~aqqyad~aln--~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 472 FADAQQYADIALN--IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK 549 (840)
T ss_pred hhHHHHHHHHHhc--ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence 4456666666776 88889999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC----CChhhHHHHHHhhcCCCChHHHHHHhcCCC--CcchhHh
Q 021611 184 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR----DPRPVMREAYNMFKGGGDPEKLVAAFSSGR--ENEYFYA 257 (310)
Q Consensus 184 Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~----d~~~~~~~a~~l~~~~~~~e~al~~~~~~~--~~d~~~a 257 (310)
.-.+--++++......-....+.+..+|++.+.++.. ||. .+..+..+|...|+--++.++.-..- =|-....
T Consensus 550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~-ilskl~dlydqegdksqafq~~ydsyryfp~nie~ 628 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA-ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET 628 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH-HHHHHHHHhhcccchhhhhhhhhhcccccCcchHH
Confidence 7776666666333222122256788899988776432 333 33455556777777777776652110 0111223
Q ss_pred hhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHH--hhcccCC
Q 021611 258 SLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKV--HSLCRNW 307 (310)
Q Consensus 258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~--~~~~~~~ 307 (310)
.-|+|.+|....=.++|+.+|++|--++.. ..-|.|..+ ..+-||+
T Consensus 629 iewl~ayyidtqf~ekai~y~ekaaliqp~----~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 629 IEWLAAYYIDTQFSEKAINYFEKAALIQPN----QSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCcc----HHHHHHHHHHHHHhcccH
Confidence 347888888888889999999998876543 334555433 3344443
No 83
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.62 E-value=9.6e-09 Score=81.33 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=81.0
Q ss_pred hcccchhhhhhhhcCCCCchhH---HHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFE 175 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~---~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~ 175 (310)
+...+|...|.+++. .+|++ +.+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|.++..+|+++
T Consensus 16 ~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 93 (119)
T TIGR02795 16 GDYADAIQAFQAFLK--KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKE 93 (119)
T ss_pred CCHHHHHHHHHHHHH--HCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChH
Confidence 356678899999887 77765 6899999999999999999999999999999985 678999999999999999
Q ss_pred hhhhhhhhhhccCCCCCc
Q 021611 176 EGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 176 eA~~~f~~Al~l~P~d~~ 193 (310)
+|+..++++++..|+++.
T Consensus 94 ~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 94 KAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHHHCcCChh
Confidence 999999999999998764
No 84
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.7e-08 Score=94.78 Aligned_cols=199 Identities=18% Similarity=0.169 Sum_probs=137.0
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
.-+.++...|+.+|. +.|+++..|.+|+.++...|+|++|+-+.++.++++|.++..+...|.++..+++..+|.+.|
T Consensus 63 k~Y~nal~~yt~Ai~--~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 63 KTYGNALKNYTFAID--MCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred hhHHHHHHHHHHHHH--hCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 345679999999998 999999999999999999999999999999999999999998888888887777777766444
Q ss_pred h----------------------------------------------------hhhccCCCCCccceeeeehhhhhcChH
Q 021611 182 R----------------------------------------------------IDVAQNPNDTEESIWCFLCEAQLYGVD 209 (310)
Q Consensus 182 ~----------------------------------------------------~Al~l~P~d~~~~~~~~l~~a~l~~~~ 209 (310)
+ ..+++++.+.++...++++.-..++.+
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ 220 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNAD 220 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchH
Confidence 3 234455555555555555555555556
Q ss_pred HHHHhHHH---hcCCChh------------hHHHHHH-hhcCCCChHHHHHHhcCC--CCcc--hhHhhhh--hhhhhhh
Q 021611 210 EARNRFLE---VGRDPRP------------VMREAYN-MFKGGGDPEKLVAAFSSG--RENE--YFYASLY--AGLFYES 267 (310)
Q Consensus 210 eA~~~l~~---~~~d~~~------------~~~~a~~-l~~~~~~~e~al~~~~~~--~~~d--~~~a~~~--lG~~~~~ 267 (310)
.++..+.+ .+|+... .+.+-.. .|+ .|++..+.+++... ..|+ ...+++| ++.+...
T Consensus 221 ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk-~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~r 299 (486)
T KOG0550|consen 221 KAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK-NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIR 299 (486)
T ss_pred HHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh-ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcc
Confidence 66555544 2232111 0111111 233 45666666666422 2222 2334444 7778899
Q ss_pred ccchhhHHHHHHHhhcCCCCCCChHHHHHH---HHHhhcccCCc
Q 021611 268 QKKADAAKLHILAACESPYGQRSDDYMAAL---AKVHSLCRNWS 308 (310)
Q Consensus 268 ~G~~d~A~~~~~kAl~~~~~~~s~~~~~~l---a~~~~~~~~~~ 308 (310)
+|+.++|+...+.|+++. +.|.+.+ |..|+..+.|-
T Consensus 300 Lgrl~eaisdc~~Al~iD-----~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 300 LGRLREAISDCNEALKID-----SSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred cCCchhhhhhhhhhhhcC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999954 2454443 88888888884
No 85
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.58 E-value=3.5e-08 Score=84.66 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=66.9
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE 194 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~ 194 (310)
...+..|+..|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..|+++++++|.....
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 3457889999999999999999999999999997763 4589999999999999999999999999999987654
No 86
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.57 E-value=7.5e-08 Score=94.07 Aligned_cols=176 Identities=10% Similarity=0.009 Sum_probs=127.1
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccC----------------------------
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD---------------------------- 154 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~---------------------------- 154 (310)
..+.|...+++... .+|+++.++..++.+|...|++++|++.+.+..+..
T Consensus 168 ~~~~Al~~l~~~~~--~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 168 ENHAARHGVDKLLE--VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 56678888888887 999999999999999999999999995555544322
Q ss_pred --------------cchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh--
Q 021611 155 --------------PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV-- 218 (310)
Q Consensus 155 --------------P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~-- 218 (310)
|+++.++...+..+...|+.++|.+.++++++..| |+. .....+....++.+++++.+.+.
T Consensus 246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~--l~~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER--LVLLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH--HHHHHhhccCCChHHHHHHHHHHHh
Confidence 33555666778999999999999999999999544 443 12222333457888888877653
Q ss_pred -cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 219 -GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 219 -~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
.|+..........+....++.++|.+.++.. ..|+ ...+..++.++..+|+.++|.++|++++.+
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3333222222233455577888888887632 2333 234568999999999999999999999874
No 87
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.57 E-value=1.2e-07 Score=98.23 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=130.8
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE 202 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~ 202 (310)
.....+..++.++..|++++|+..+.++|+.+|.++.+|+.+|.+|..+|+.+++...+-.|.-++|+|.+ .|..++.
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e--~W~~lad 215 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE--LWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH--HHHHHHH
Confidence 35667778888888999999999999999999999999999999999999999999999999999999986 7877665
Q ss_pred h--hhcChHHHHHhHHHhcC---CChhhHHHHHHhhcCCCChHHHHHHhc----CCCCc--chhHhhhhh-hhhhhhccc
Q 021611 203 A--QLYGVDEARNRFLEVGR---DPRPVMREAYNMFKGGGDPEKLVAAFS----SGREN--EYFYASLYA-GLFYESQKK 270 (310)
Q Consensus 203 a--~l~~~~eA~~~l~~~~~---d~~~~~~~a~~l~~~~~~~e~al~~~~----~~~~~--d~~~a~~~l-G~~~~~~G~ 270 (310)
. ++|.+++|+-++.++.+ ...+...+-..++...|+...++..+. ..++. +.+....+. ..++...++
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 4 78899999999887543 333333333346666677666655443 22211 233333332 456666777
Q ss_pred hhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 271 ADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 271 ~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
-+.|.+.+..++.......+.+-..-++.+.+....|
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~ 332 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQS 332 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHH
Confidence 7999999999998322223333334556666655554
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.4e-07 Score=90.96 Aligned_cols=191 Identities=13% Similarity=0.032 Sum_probs=119.2
Q ss_pred hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
|..+-.+.|. .+|++..+++..|.+++..||+++|+-+|+.|+.+.|-.-..|-.+-..|...|++.||...-+.+++
T Consensus 319 AL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 319 ALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred HHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 4444455666 77777777777777777777777777777777777777777776666666677777777777777777
Q ss_pred cCCCCCccceeee-ehhhhh-cChHHHHHhHHH---hcCCChhhHHHHHHhhcCCCChHHHHHHhcCCC-CcchhHhhhh
Q 021611 187 QNPNDTEESIWCF-LCEAQL-YGVDEARNRFLE---VGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGR-ENEYFYASLY 260 (310)
Q Consensus 187 l~P~d~~~~~~~~-l~~a~l-~~~~eA~~~l~~---~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~-~~d~~~a~~~ 260 (310)
.-|+++.+.-..+ .+.+-. -.-++|...+++ +.|+--+.......+....|..+++++.++..+ +..+...|..
T Consensus 397 ~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~ 476 (564)
T KOG1174|consen 397 LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNH 476 (564)
T ss_pred HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHH
Confidence 7776665332221 111110 112444444433 223222222222234444566777777765321 2334556888
Q ss_pred hhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHh
Q 021611 261 AGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVH 301 (310)
Q Consensus 261 lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~ 301 (310)
+|.++..++.+.+|..+|.+|+.++. .+....-+|-++.
T Consensus 477 Lgd~~~A~Ne~Q~am~~y~~ALr~dP--~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 477 LGDIMRAQNEPQKAMEYYYKALRQDP--KSKRTLRGLRLLE 515 (564)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHH
Confidence 99999999999999999999999653 3334444554443
No 89
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.4e-08 Score=92.85 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=90.5
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhh---hhhhhhhhhhhhhccCCCCCccc
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD---RFEEGAEQFRIDVAQNPNDTEES 195 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg---~~~eA~~~f~~Al~l~P~d~~~~ 195 (310)
.||+|++-|..+|.+|+.+|+++.|+..|.+|+++.|+++..+...|.+++... .-.++.+.|++++++||+|..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 899999999999999999999999999999999999999999999999999884 36788999999999999999876
Q ss_pred eeeeehhhhhcChHHHHHhHHHh
Q 021611 196 IWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 196 ~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
.+......+.|++++|......+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHH
Confidence 66666666899999999987653
No 90
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.55 E-value=3.2e-08 Score=81.25 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=79.8
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC---Ccccee
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND---TEESIW 197 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d---~~~~~~ 197 (310)
|.++|++|.++..+|+.++|+..|++|++..+.. ..+++++|.++..+|++++|+..+++++...|++ ......
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 4578999999999999999999999999986543 6799999999999999999999999999988884 333333
Q ss_pred eeehhhhhcChHHHHHhHHHh
Q 021611 198 CFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 198 ~~l~~a~l~~~~eA~~~l~~~ 218 (310)
..+++..+|+.+||+..+...
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 445555789999999988763
No 91
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.54 E-value=6.2e-09 Score=79.21 Aligned_cols=80 Identities=23% Similarity=0.409 Sum_probs=67.5
Q ss_pred ccccccchhhhhhccccCcc--hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHh
Q 021611 137 QGDVVGSVAEFDKAIELDPR--QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR 214 (310)
Q Consensus 137 ~g~~~eAl~~f~kAl~l~P~--~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~ 214 (310)
+|++++|+..|+++++.+|. +..+++.+|.+++..|+|++|++.+++ .+.+|.++......+.|..++|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 567888899999999999999999999 888887766545555666689999999998
Q ss_pred HHH
Q 021611 215 FLE 217 (310)
Q Consensus 215 l~~ 217 (310)
+.+
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 92
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.52 E-value=1.4e-07 Score=94.57 Aligned_cols=190 Identities=10% Similarity=0.044 Sum_probs=135.4
Q ss_pred CCchhHHHHHHHhhhhheeccccccchhhhhhcccc--------CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccC-
Q 021611 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN- 188 (310)
Q Consensus 118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~- 188 (310)
...|.--.+...+|..|..+|+|+.|+..|.+|+++ .|.-.......|.+|..+++|++|+..|++|+.+-
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 567877788888999999999999999999999999 77777777779999999999999999999999862
Q ss_pred ----CCCCc-cceeeeehhh--hhcChHHHHHhHHHhcC--------CCh---hhHHHHHHhhcCCCChHHHHHHhc---
Q 021611 189 ----PNDTE-ESIWCFLCEA--QLYGVDEARNRFLEVGR--------DPR---PVMREAYNMFKGGGDPEKLVAAFS--- 247 (310)
Q Consensus 189 ----P~d~~-~~~~~~l~~a--~l~~~~eA~~~l~~~~~--------d~~---~~~~~a~~l~~~~~~~e~al~~~~--- 247 (310)
++++. +.....|+.+ ..|+++||...++++.. .+. ..+......+...+++|++...+.
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33332 2233444433 67899999988765321 111 123345556777778888765553
Q ss_pred ----CCCCcch-h--HhhhhhhhhhhhccchhhHHHHHHHhhcCCC---CCC---ChHHHHHHHHHhhcccCC
Q 021611 248 ----SGRENEY-F--YASLYAGLFYESQKKADAAKLHILAACESPY---GQR---SDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 248 ----~~~~~d~-~--~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~---~~~---s~~~~~~la~~~~~~~~~ 307 (310)
.....+. . .-...+|.+|..+|++++|...|++|+.... +.. -...++.||..+.+++..
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~ 425 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY 425 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc
Confidence 1122221 2 2233599999999999999999999998421 211 134567888887777654
No 93
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.52 E-value=2.8e-07 Score=84.51 Aligned_cols=171 Identities=8% Similarity=0.018 Sum_probs=109.1
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhH---HHhhccchhhhhhhhhhhhhhhhhhccCCCCCccc-ee
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAY---LWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEES-IW 197 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a---~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~-~~ 197 (310)
.++..++..|..++..|+|++|++.|++++...|+.+.+ .+.+|.++++.++|++|+..|++.++..|+++... ++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 357778999999999999999999999999999987554 48999999999999999999999999999998632 22
Q ss_pred eeehhh--hhc---------------C---hHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHh
Q 021611 198 CFLCEA--QLY---------------G---VDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYA 257 (310)
Q Consensus 198 ~~l~~a--~l~---------------~---~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a 257 (310)
+-++.. .++ + ..+|+..+.++.. .|-...-.+++...+... ......-
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~-----------~yP~S~ya~~A~~rl~~l-~~~la~~ 177 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR-----------GYPNSQYTTDATKRLVFL-KDRLAKY 177 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH-----------HCcCChhHHHHHHHHHHH-HHHHHHH
Confidence 222221 111 1 1223333333111 111111112221111100 0011122
Q ss_pred hhhhhhhhhhccchhhHHHHHHHhhcCCCCC--CChHHHHHHHHHhhccc
Q 021611 258 SLYAGLFYESQKKADAAKLHILAACESPYGQ--RSDDYMAALAKVHSLCR 305 (310)
Q Consensus 258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~--~s~~~~~~la~~~~~~~ 305 (310)
.+..|..|...|.+..|+.-++.+++ +|+. ..++.++.+..++...|
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~-~Yp~t~~~~eal~~l~~ay~~lg 226 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLR-DYPDTQATRDALPLMENAYRQLQ 226 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHH-HCCCCchHHHHHHHHHHHHHHcC
Confidence 34577888888888888888888887 4432 44666677766665554
No 94
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.50 E-value=1.1e-07 Score=99.15 Aligned_cols=203 Identities=12% Similarity=0.095 Sum_probs=149.0
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
...|..+|..++. ..|...++|..+|-.....+...+|...+..++..|..++.++-..|..++....|.-|-+-|+.
T Consensus 512 ~~~A~e~Yk~Ilk--ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 512 TEVAEEMYKSILK--EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred hhHHHHHHHHHHH--HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 4456788888887 89999999999997777789999999999999999999999999999999999999999998887
Q ss_pred hhccCCCCCccceeeeehhh--------------hhcChHHHHHhHHHhcC-CChhhHH--HHHHhhcCCCChHHHHHHh
Q 021611 184 DVAQNPNDTEESIWCFLCEA--------------QLYGVDEARNRFLEVGR-DPRPVMR--EAYNMFKGGGDPEKLVAAF 246 (310)
Q Consensus 184 Al~l~P~d~~~~~~~~l~~a--------------~l~~~~eA~~~l~~~~~-d~~~~~~--~a~~l~~~~~~~e~al~~~ 246 (310)
.++.--..+.++....|+.. ..+..+.|++.+.++.. +|...+. -....+...|+..+|...+
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHH
Confidence 77653333334444455443 11345677777776544 4554332 1223455566777766655
Q ss_pred cCCCC--cchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 247 SSGRE--NEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 247 ~~~~~--~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
..... .+....++++|-||..+|+|-.|++.|..+++--+...+.+.+.-||++++.+|.|.
T Consensus 670 sqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 670 SQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred HHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 42211 123446778999999999999999999999986554556788889999999999874
No 95
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.50 E-value=5e-07 Score=91.23 Aligned_cols=173 Identities=14% Similarity=0.064 Sum_probs=97.5
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh-
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA- 203 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a- 203 (310)
..|+.-......+++.++|+..++++++..|++...|.++|.++..+++.+.|.+.|...++..|+.+- +|..++..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip--LWllLakle 729 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP--LWLLLAKLE 729 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch--HHHHHHHHH
Confidence 455555555555666666666666666666666666666666666666666666666666666665432 44444333
Q ss_pred -hhcChHHHHHhHHH----------------------------------hcCC---ChhhHHHHHHhhcCCCC---hHHH
Q 021611 204 -QLYGVDEARNRFLE----------------------------------VGRD---PRPVMREAYNMFKGGGD---PEKL 242 (310)
Q Consensus 204 -~l~~~~eA~~~l~~----------------------------------~~~d---~~~~~~~a~~l~~~~~~---~e~a 242 (310)
+.|+...|+..+.+ +.++ ....+.++..+....++ ..+|
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHH
Confidence 33445555555444 2221 11122222222222211 1122
Q ss_pred HHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 243 VAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 243 l~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
++.+.. +....+..|..+....++++|+..|.+|++... ...|.|..+=+.++++|+
T Consensus 810 Lkkce~-----dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~--d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 810 LKKCEH-----DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP--DNGDAWAWFYKFELRHGT 866 (913)
T ss_pred HHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC--ccchHHHHHHHHHHHhCC
Confidence 222221 123344577888899999999999999999543 445898888888888874
No 96
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.48 E-value=1.5e-07 Score=83.79 Aligned_cols=171 Identities=18% Similarity=0.197 Sum_probs=109.2
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc---cce
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE---ESI 196 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~---~~~ 196 (310)
.+..++..|..++..|+|++|+..|++++...|+. +.+.+.+|.+++..|+|++|+..|++.++..|+++. +.+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 57889999999999999999999999999999874 678999999999999999999999999999999875 223
Q ss_pred eeeehhhhhc-----------ChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhh
Q 021611 197 WCFLCEAQLY-----------GVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFY 265 (310)
Q Consensus 197 ~~~l~~a~l~-----------~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~ 265 (310)
+.+++...+. ...+|...+..+ ...|-.....+++...+.. .......-.+..|..|
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l-----------i~~yP~S~y~~~A~~~l~~-l~~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL-----------IKRYPNSEYAEEAKKRLAE-LRNRLAEHELYIARFY 151 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH-----------HHH-TTSTTHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHH-----------HHHCcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3332222110 112333333221 1111111122222222110 0011222345689999
Q ss_pred hhccchhhHHHHHHHhhcCCCCC--CChHHHHHHHHHhhcccC
Q 021611 266 ESQKKADAAKLHILAACESPYGQ--RSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 266 ~~~G~~d~A~~~~~kAl~~~~~~--~s~~~~~~la~~~~~~~~ 306 (310)
...|.+..|+..++.+++ +|+. ...+.+..+...+..+|.
T Consensus 152 ~~~~~y~aA~~r~~~v~~-~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIE-NYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HCTT-HHHHHHHHHHHHH-HSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHcccHHHHHHHHHHHHH-HCCCCchHHHHHHHHHHHHHHhCC
Confidence 999999999999999999 4543 335677777877777663
No 97
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.48 E-value=1.4e-07 Score=87.56 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=87.0
Q ss_pred HHHHHHHhhhhh-eeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611 123 EAVVAIRRGMLL-FRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC 198 (310)
Q Consensus 123 ~~~a~~~rG~~~-~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~ 198 (310)
+...+|..+..+ +..|+|++|+..|++.++..|+. +.+++.+|.+++..|++++|+..|+++++..|+++..
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~---- 216 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA---- 216 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----
Confidence 346778888876 56799999999999999999987 5799999999999999999999999999999976531
Q ss_pred eehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHH
Q 021611 199 FLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHI 278 (310)
Q Consensus 199 ~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~ 278 (310)
..+++.+|.++..+|+.++|+..|
T Consensus 217 --------------------------------------------------------~dAl~klg~~~~~~g~~~~A~~~~ 240 (263)
T PRK10803 217 --------------------------------------------------------ADAMFKVGVIMQDKGDTAKAKAVY 240 (263)
T ss_pred --------------------------------------------------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 123445788888899999999999
Q ss_pred HHhhcCCCCC
Q 021611 279 LAACESPYGQ 288 (310)
Q Consensus 279 ~kAl~~~~~~ 288 (310)
+++++ .|+.
T Consensus 241 ~~vi~-~yP~ 249 (263)
T PRK10803 241 QQVIK-KYPG 249 (263)
T ss_pred HHHHH-HCcC
Confidence 99998 4543
No 98
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.46 E-value=1.9e-08 Score=72.93 Aligned_cols=59 Identities=19% Similarity=0.326 Sum_probs=54.7
Q ss_pred eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 135 FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 135 ~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
+..|++++|++.|+++++.+|++..+++.+|.++...|++++|.+.+++++..+|+++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 56799999999999999999999999999999999999999999999999999998754
No 99
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.8e-08 Score=93.91 Aligned_cols=69 Identities=17% Similarity=0.392 Sum_probs=67.0
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
..+.|++++++.+++|.+|+..++++|+++|++..++|.+|.++..+|+|+.|+.+|+++++++|++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 688999999999999999999999999999999999999999999999999999999999999999864
No 100
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.46 E-value=4.4e-08 Score=73.14 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=59.6
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccccC-------cchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-------PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~-------P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l 187 (310)
|+-+.++.++|.++..+|++++|++.|++++++. |.-...+.++|.++..+|++++|++.|++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7778999999999999999999999999999772 233678899999999999999999999999876
No 101
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=1.5e-07 Score=92.13 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=62.1
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL 200 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l 200 (310)
|.-..++|.++..++..|.+++|+..++..|+..|+++..+-.+|.++.+.++.++|++.+++++.++|+.+ ..+..+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~--~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP--LLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--HHHHHH
Confidence 555666777777777777777777777777777777666666677777777777777777777777777553 244444
Q ss_pred hhh--hhcChHHHHHhHHH
Q 021611 201 CEA--QLYGVDEARNRFLE 217 (310)
Q Consensus 201 ~~a--~l~~~~eA~~~l~~ 217 (310)
+.+ +.|++.+|+..+.+
T Consensus 381 a~all~~g~~~eai~~L~~ 399 (484)
T COG4783 381 AQALLKGGKPQEAIRILNR 399 (484)
T ss_pred HHHHHhcCChHHHHHHHHH
Confidence 443 55666666666554
No 102
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.45 E-value=5.7e-08 Score=83.79 Aligned_cols=89 Identities=15% Similarity=0.230 Sum_probs=75.8
Q ss_pred hhcccchhhhhhhhcCCCCchh---HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhh----
Q 021611 101 RLFIPSVSGIWDALTGGNNNSR---EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR---- 173 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~---~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~---- 173 (310)
.+...+|...|.+++. ++|+ .+.+++++|.++..+|++++|+..++++++++|++..++..+|.++..+|+
T Consensus 48 ~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a 125 (172)
T PRK02603 48 DGEYAEALENYEEALK--LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEE 125 (172)
T ss_pred cCCHHHHHHHHHHHHH--HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhH
Confidence 3456678898988886 5554 467999999999999999999999999999999999999999999999888
Q ss_pred ----------hhhhhhhhhhhhccCCCC
Q 021611 174 ----------FEEGAEQFRIDVAQNPND 191 (310)
Q Consensus 174 ----------~~eA~~~f~~Al~l~P~d 191 (310)
+++|++.++++++++|++
T Consensus 126 ~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 126 AGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 567777777777777765
No 103
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.45 E-value=3.6e-07 Score=96.80 Aligned_cols=173 Identities=7% Similarity=-0.051 Sum_probs=118.7
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh--ccchhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR--GLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~--G~a~~~lg~~~eA~~~ 180 (310)
....|...+.+++. .+|+++.+...+..++...|+.++|+..+++++ +|.+..++..+ |.++..+|+|++|++.
T Consensus 49 d~~~Al~~L~qaL~--~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 49 DTAPVLDYLQEESK--AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred CHHHHHHHHHHHHh--hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34478999999998 999996444488888889999999999999999 55554555445 7799999999999999
Q ss_pred hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CChhhH--HHHHHhhcCCCChHHHHHHhcC--CCCcchh
Q 021611 181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPRPVM--REAYNMFKGGGDPEKLVAAFSS--GRENEYF 255 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~~~~--~~a~~l~~~~~~~e~al~~~~~--~~~~d~~ 255 (310)
|+++++.+|+++.......+.....++.++|+..+.++.+ ++.... ..++ ++.+.++..++++.++. ...|+..
T Consensus 125 y~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~lay-L~~~~~~~~~AL~~~ekll~~~P~n~ 203 (822)
T PRK14574 125 WQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSY-LNRATDRNYDALQASSEAVRLAPTSE 203 (822)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHH-HHHhcchHHHHHHHHHHHHHhCCCCH
Confidence 9999999999987543222223367889999999988654 333222 2233 23334455446555542 2234434
Q ss_pred HhhhhhhhhhhhccchhhHHHHHHH
Q 021611 256 YASLYAGLFYESQKKADAAKLHILA 280 (310)
Q Consensus 256 ~a~~~lG~~~~~~G~~d~A~~~~~k 280 (310)
....-+-..+...|-.+.|.+...+
T Consensus 204 e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 204 EVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 3333344556666777677666554
No 104
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.45 E-value=3.3e-07 Score=91.97 Aligned_cols=179 Identities=16% Similarity=0.211 Sum_probs=125.5
Q ss_pred ccchhhhhhhhcC------CCCchhHHHHHHHhhhhheeccccccchhhhhhccccC--------cchhhHHHhhccchh
Q 021611 104 IPSVSGIWDALTG------GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD--------PRQKAYLWQRGLSLY 169 (310)
Q Consensus 104 ~~~a~~~~~~ai~------~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~--------P~~~~a~~~~G~a~~ 169 (310)
+.+|..+|.+++. |+.+|.-+.++.++|.+|...|+++||...+++|+++- |.-...+.+.+.++.
T Consensus 257 ~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 257 YDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 3445666665532 47899999999999999999999999999999999874 444667888999999
Q ss_pred hhhhhhhhhhhhhhhhccC-----CCCC-ccceeeeehhh--hhcChHHHHHhHHHhcC---------C---ChhhHHHH
Q 021611 170 YLDRFEEGAEQFRIDVAQN-----PNDT-EESIWCFLCEA--QLYGVDEARNRFLEVGR---------D---PRPVMREA 229 (310)
Q Consensus 170 ~lg~~~eA~~~f~~Al~l~-----P~d~-~~~~~~~l~~a--~l~~~~eA~~~l~~~~~---------d---~~~~~~~a 229 (310)
.++++++|+..+++++++- ++++ .+.....++.. ..|+++||.+.+.++.. + ..+.+..+
T Consensus 337 ~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence 9999999999999998863 2221 11122333333 67999999998776432 1 11222222
Q ss_pred HHhhcCCCChHHHHHHhc---------CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 230 YNMFKGGGDPEKLVAAFS---------SGRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 230 ~~l~~~~~~~e~al~~~~---------~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
. .+...+.++++...+. -+..++..+.+.+|+.+|..+|++|.|+++-.+++.
T Consensus 417 ~-~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 417 E-AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred H-HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 2233444444333321 123456677777899999999999999999999985
No 105
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=2.8e-07 Score=82.49 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=103.0
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL 200 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l 200 (310)
...+..++.||..|-++|-..-|.-||++++.++|+.+.+++.+|+-+...|+|+.|.+.|+..+++||....+..++++
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 35789999999999999999999999999999999999999999999999999999999999999999988777677776
Q ss_pred hhhhhcChHHHHHhHHHh-cCCChhhHHHHHHhhc-CCCChHHHHHHh
Q 021611 201 CEAQLYGVDEARNRFLEV-GRDPRPVMREAYNMFK-GGGDPEKLVAAF 246 (310)
Q Consensus 201 ~~a~l~~~~eA~~~l~~~-~~d~~~~~~~a~~l~~-~~~~~e~al~~~ 246 (310)
+.-.-|++.-|.+++.+- ..||.+.++.+..++. ..-++.+|...+
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL 189 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNL 189 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHH
Confidence 666789999999988763 3355544444433333 334566666555
No 106
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.40 E-value=4.5e-07 Score=91.68 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=74.7
Q ss_pred HHHHHhhhhheeccc---cccchhhhhhccccCcchhhHHHhhccchhhhh--------hhhhhhhhhhhhhcc--CCCC
Q 021611 125 VVAIRRGMLLFRQGD---VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD--------RFEEGAEQFRIDVAQ--NPND 191 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~---~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg--------~~~eA~~~f~~Al~l--~P~d 191 (310)
-.++.+|..++..++ ++.|++.|++|++++|++..+|-.++.++.... +.+.+.+..++++.+ +|.+
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~ 419 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL 419 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence 344556666654443 556777777777777777666666666554432 223333334443332 3322
Q ss_pred CccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhcc
Q 021611 192 TEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQK 269 (310)
Q Consensus 192 ~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G 269 (310)
+. ++..++. .....|++++|.+.++. ..++ ...++..+|.++...|
T Consensus 420 ~~--~~~ala~-----------------------------~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G 467 (517)
T PRK10153 420 PR--IYEILAV-----------------------------QALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKG 467 (517)
T ss_pred hH--HHHHHHH-----------------------------HHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC
Confidence 22 1111111 11123455555554432 2234 3568889999999999
Q ss_pred chhhHHHHHHHhhcCCC
Q 021611 270 KADAAKLHILAACESPY 286 (310)
Q Consensus 270 ~~d~A~~~~~kAl~~~~ 286 (310)
+.++|...|++|+.+..
T Consensus 468 ~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 468 DNRLAADAYSTAFNLRP 484 (517)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 99999999999999654
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=7.2e-07 Score=87.48 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=91.4
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...++....+..+. ..|+|+..+-.+|.+++..|+..+|++-+++++.++|+.+...+++|.++.+.|++.+|+..++
T Consensus 321 ~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 321 QYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred ccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 45556677777777 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccceeeeehhh--hhcChHHHH
Q 021611 183 IDVAQNPNDTEESIWCFLCEA--QLYGVDEAR 212 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~ 212 (310)
..+..+|+|+. .|..++.+ .+|+..++.
T Consensus 399 ~~~~~~p~dp~--~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 399 RYLFNDPEDPN--GWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHhhcCCCCch--HHHHHHHHHHHhCchHHHH
Confidence 99999999987 57776655 455554443
No 108
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=2.4e-07 Score=87.23 Aligned_cols=177 Identities=10% Similarity=-0.038 Sum_probs=141.4
Q ss_pred chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV 185 (310)
Q Consensus 106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al 185 (310)
.|...+.+-+. .-|.+.......+.++-.++++++|++.|..+++++|.+.++.--.|.-|+.-++.|-|+..|++.+
T Consensus 274 ~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 274 RALLVIGEGLD--SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred HHHHHHhhhhh--cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 44455555555 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-----C-ChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHh
Q 021611 186 AQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-----D-PRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYA 257 (310)
Q Consensus 186 ~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-----d-~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a 257 (310)
.+--.+++-+.+.++|-...++++-++..++++.. + ..++|-.+.....+.|+..-|.+++.. ..+++...+
T Consensus 352 qmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 352 QMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 99988888555555555556677878887776422 1 223333333344567888888888874 346677888
Q ss_pred hhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 258 SLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
..++|.+-.+.|++++|+..++.|-..
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 889999999999999999999999873
No 109
>PRK11906 transcriptional regulator; Provisional
Probab=98.38 E-value=1.5e-07 Score=92.41 Aligned_cols=112 Identities=12% Similarity=-0.018 Sum_probs=97.2
Q ss_pred ccchhhhhhhhc---CCCCchhHHHHHHHhhhhheec---------cccccchhhhhhccccCcchhhHHHhhccchhhh
Q 021611 104 IPSVSGIWDALT---GGNNNSREAVVAIRRGMLLFRQ---------GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL 171 (310)
Q Consensus 104 ~~~a~~~~~~ai---~~~~~P~~~~a~~~rG~~~~~~---------g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l 171 (310)
...|..++.+++ . ++|+.+.+|-.++.+++.. .+-.+|++.-++|++++|+++.+++.+|.++...
T Consensus 274 ~~~Al~lf~ra~~~~~--ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSD--IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhccc--CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 345778899999 6 9999999999999888764 2345788999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611 172 DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 172 g~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~ 217 (310)
|+++.|...|++|+.++||++.++++.++.....|+.++|.+.+.+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999988666665555678999999998877
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=4.9e-07 Score=92.08 Aligned_cols=110 Identities=17% Similarity=0.262 Sum_probs=91.5
Q ss_pred chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV 185 (310)
Q Consensus 106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al 185 (310)
....+|+++++. .|-.++.|....|....+.++|+++..+|+.+++++|-....|+.+|.+..+++++..|+++|..++
T Consensus 468 ~d~s~yEkawEl-sn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 468 HDPSLYEKAWEL-SNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred cChHHHHHHHHH-hhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 355667766651 2334667888889988999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccceeeeehhh--hhcChHHHHHhHHHh
Q 021611 186 AQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEV 218 (310)
Q Consensus 186 ~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~ 218 (310)
.++|++.+ .|.++.-+ ++++-.+|...+.++
T Consensus 547 tL~Pd~~e--aWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 547 TLEPDNAE--AWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred hcCCCchh--hhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 99999987 68777655 566667776666653
No 111
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=1.7e-07 Score=82.96 Aligned_cols=89 Identities=16% Similarity=0.251 Sum_probs=77.1
Q ss_pred hcccchhhhhhhhcCCCCchh-----HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSR-----EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEE 176 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~-----~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~e 176 (310)
+.+.+|..-|..++. +-|. ....|.+||.+++.+++.+.||.++.|||+|+|.+..|+..|+.+|.++..|++
T Consensus 109 gdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ee 186 (271)
T KOG4234|consen 109 GDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEE 186 (271)
T ss_pred ccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHH
Confidence 355667777887776 5553 457899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCCC
Q 021611 177 GAEQFRIDVAQNPNDT 192 (310)
Q Consensus 177 A~~~f~~Al~l~P~d~ 192 (310)
|+++|.+.++.+|...
T Consensus 187 aleDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 187 ALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHHHHhCcchH
Confidence 9999999999999543
No 112
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=6e-07 Score=75.34 Aligned_cols=122 Identities=17% Similarity=0.134 Sum_probs=84.0
Q ss_pred hhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc-cceeeeehhhhhcC
Q 021611 132 MLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE-ESIWCFLCEAQLYG 207 (310)
Q Consensus 132 ~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~-~~~~~~l~~a~l~~ 207 (310)
......|+...+.+.+++.++-+|+. ..+.+.+|.+++..|++++|++.|++++...|+... ..++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L------- 91 (145)
T PF09976_consen 19 LQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL------- 91 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH-------
Confidence 33336788888888899999999987 567788999999999999999999999997765421 0111111
Q ss_pred hHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCC-CcchhHhhhhhhhhhhhccchhhHHHHHHHhh
Q 021611 208 VDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGR-ENEYFYASLYAGLFYESQKKADAAKLHILAAC 282 (310)
Q Consensus 208 ~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~-~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl 282 (310)
+. ++...+++++++..+.... ++-...++..+|.++..+|++++|+..|++|+
T Consensus 92 ---------------------A~-~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ---------------------AR-ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---------------------HH-HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 11 1222445555555543221 12223345569999999999999999999986
No 113
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.34 E-value=8.6e-08 Score=93.84 Aligned_cols=93 Identities=18% Similarity=0.239 Sum_probs=87.9
Q ss_pred cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~ 178 (310)
-+...+..|..+|.++|. ++|+.+..+-+|+.++++.+++-+|+.|+.+||+++|....+|+.+|.+...++++.+|+
T Consensus 15 l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred cccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 333467789999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCc
Q 021611 179 EQFRIDVAQNPNDTE 193 (310)
Q Consensus 179 ~~f~~Al~l~P~d~~ 193 (310)
.+|++...+.|+++.
T Consensus 93 ~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHhhhcCcCcHH
Confidence 999999999999976
No 114
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.33 E-value=1.6e-06 Score=79.51 Aligned_cols=163 Identities=16% Similarity=0.116 Sum_probs=112.9
Q ss_pred cccchhhhhhhhcCCCCchhHHH---HHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhh----
Q 021611 103 FIPSVSGIWDALTGGNNNSREAV---VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLD---- 172 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~---a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg---- 172 (310)
.+.+|...|.+++. ..|..+. +.+.+|.+++++|++++|+..|++.++++|++ +.+++.+|.++..++
T Consensus 47 ~y~~Ai~~f~~l~~--~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~ 124 (243)
T PRK10866 47 NWKQAITQLEALDN--RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSAL 124 (243)
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhh
Confidence 46678888888887 7786654 45999999999999999999999999999986 567899998875554
Q ss_pred --------------hhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCCh-hhHHHHHHhhcCCC
Q 021611 173 --------------RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPR-PVMREAYNMFKGGG 237 (310)
Q Consensus 173 --------------~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~-~~~~~a~~l~~~~~ 237 (310)
.-.+|++.|++.++.-|+... ..+|...+..+..... ..+ .+..++...+
T Consensus 125 ~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y--------------a~~A~~rl~~l~~~la~~e~-~ia~~Y~~~~ 189 (243)
T PRK10866 125 QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY--------------TTDATKRLVFLKDRLAKYEL-SVAEYYTKRG 189 (243)
T ss_pred hhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh--------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHcC
Confidence 135788999999999997643 1233332222111000 001 1222334456
Q ss_pred ChHHHHHHhcC-----CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhh
Q 021611 238 DPEKLVAAFSS-----GRENEYFYASLYAGLFYESQKKADAAKLHILAAC 282 (310)
Q Consensus 238 ~~e~al~~~~~-----~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl 282 (310)
.+..|+..++. +..+....+.+.++..|..+|..++|........
T Consensus 190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 67666655531 2233456688889999999999999998766543
No 115
>PRK11906 transcriptional regulator; Provisional
Probab=98.32 E-value=2.7e-07 Score=90.64 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=78.5
Q ss_pred chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV 185 (310)
Q Consensus 106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al 185 (310)
++..+-.++++ ++|+|+.++..+|.++...|+++.|+..|++|+.++|+++.+|+..|.++...|+.++|++.+++|+
T Consensus 322 ~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45566667777 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 021611 186 AQNPND 191 (310)
Q Consensus 186 ~l~P~d 191 (310)
+++|.-
T Consensus 400 rLsP~~ 405 (458)
T PRK11906 400 QLEPRR 405 (458)
T ss_pred ccCchh
Confidence 999953
No 116
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.32 E-value=2.3e-07 Score=79.52 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=71.7
Q ss_pred cccchhhhhhhhcCCCCchh---HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchh-------hhh
Q 021611 103 FIPSVSGIWDALTGGNNNSR---EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLY-------YLD 172 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~---~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~-------~lg 172 (310)
...+|...+.+++. +.|+ .+.+|+++|.++...|++++|+..|++|++++|....++.++|.++. .+|
T Consensus 50 ~~~~A~~~~~~al~--l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g 127 (168)
T CHL00033 50 EYAEALQNYYEAMR--LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG 127 (168)
T ss_pred CHHHHHHHHHHHHh--ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence 46678888888876 5444 45699999999999999999999999999999999999999999998 666
Q ss_pred hhh-------hhhhhhhhhhccCCCC
Q 021611 173 RFE-------EGAEQFRIDVAQNPND 191 (310)
Q Consensus 173 ~~~-------eA~~~f~~Al~l~P~d 191 (310)
+++ +|+..|++++..+|++
T Consensus 128 ~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 128 DSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 766 5566666677778754
No 117
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.31 E-value=1.3e-07 Score=89.40 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=85.0
Q ss_pred chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
+.+-+.+|.++|.+.|. .+|.|+..+.+|+++|+++++|..|..|++.|+.||-.+..+|-.||.+...+|...||.+
T Consensus 109 KQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 109 KQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34456679999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCCc
Q 021611 180 QFRIDVAQNPNDTE 193 (310)
Q Consensus 180 ~f~~Al~l~P~d~~ 193 (310)
+++.++++.|+..+
T Consensus 187 D~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 187 DCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHhhCcccHH
Confidence 99999999998654
No 118
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.30 E-value=1e-07 Score=82.90 Aligned_cols=90 Identities=23% Similarity=0.382 Sum_probs=72.4
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheecccc----------ccchhhhhhccccCcchhhHHHhhccchhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDV----------VGSVAEFDKAIELDPRQKAYLWQRGLSLYYL 171 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~----------~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l 171 (310)
.++..+.+.+..... .||.+++++++=|.+++.+.++ ++|+.-|++||.++|+...+++++|.++..+
T Consensus 5 ~~FE~ark~aea~y~--~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 5 LFFEHARKKAEAAYA--KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 356667777776666 8999999999999999887554 5789999999999999999999999999988
Q ss_pred hh-----------hhhhhhhhhhhhccCCCCCc
Q 021611 172 DR-----------FEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 172 g~-----------~~eA~~~f~~Al~l~P~d~~ 193 (310)
+. |++|.++|++|...+|++..
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 76 89999999999999998753
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.26 E-value=1.4e-06 Score=92.33 Aligned_cols=191 Identities=8% Similarity=-0.057 Sum_probs=125.5
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh-------------------hHHHh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-------------------AYLWQ 163 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-------------------~a~~~ 163 (310)
...++..++...+. .+|+....|+.+|.++++.+++++|... +++.+-|.+. .|++.
T Consensus 46 ~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~ 121 (906)
T PRK14720 46 LTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRT 121 (906)
T ss_pred CHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHH
Confidence 45566777777776 8999999999999999999998888777 7777777766 89999
Q ss_pred hccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC------CCh---hhHHHHHHhhc
Q 021611 164 RGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR------DPR---PVMREAYNMFK 234 (310)
Q Consensus 164 ~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~------d~~---~~~~~a~~l~~ 234 (310)
+|.+|-.+|++++|...|+++++++|+|+.+..+++...+.. +.++|...+.++-. ... ..|.... ..
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~--~~ 198 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLV--HY 198 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH--hc
Confidence 999999999999999999999999999987544444444445 88888887765311 111 1111111 11
Q ss_pred CCCChHHHHHHh---cCC-CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhh
Q 021611 235 GGGDPEKLVAAF---SSG-RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHS 302 (310)
Q Consensus 235 ~~~~~e~al~~~---~~~-~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~ 302 (310)
...+.+...... ... ..........-+=.+|-..+++++++..++.+++.. +.+.-..+.|+..+.
T Consensus 199 ~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 199 NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence 111112211111 100 011111111123368888999999999999999954 444455666666554
No 120
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.25 E-value=2.3e-07 Score=66.77 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=50.2
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~ 158 (310)
.+.+.+|...|.+++. .+|+++.+|+.+|.++..+|++++|++.|+++++++|+++
T Consensus 10 ~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp CTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred cCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3357789999999998 9999999999999999999999999999999999999875
No 121
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.25 E-value=4e-06 Score=84.67 Aligned_cols=180 Identities=18% Similarity=0.214 Sum_probs=103.4
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 203 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a 203 (310)
.+....+.+++...|++++|++++++....-++.....-.+|.++..+|++++|...|+..++.||++.. ++..+..+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~--Yy~~L~~~ 81 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD--YYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--HHHHHHHH
Confidence 4555666666777777777777777766666666666666777777777777777777777777776653 22222111
Q ss_pred h---hc----ChHHHHHhHHHh-----------------------------------cCCChhhHHHHHHhhcCCCCh--
Q 021611 204 Q---LY----GVDEARNRFLEV-----------------------------------GRDPRPVMREAYNMFKGGGDP-- 239 (310)
Q Consensus 204 ~---l~----~~~eA~~~l~~~-----------------------------------~~d~~~~~~~a~~l~~~~~~~-- 239 (310)
. .+ ..+.-...+.++ .+...+.+..+-.++....+.
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 1 00 011111111111 111112222222233322221
Q ss_pred -HHHHHHh----cCC----------CCcc--hhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhh
Q 021611 240 -EKLVAAF----SSG----------RENE--YFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHS 302 (310)
Q Consensus 240 -e~al~~~----~~~----------~~~d--~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~ 302 (310)
++....+ ... ..++ ..+.+++++..|...|++++|+.+.++||++. +...+++...|+.+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHH
Confidence 1111111 100 1122 24677889999999999999999999999965 456799999999988
Q ss_pred cccCC
Q 021611 303 LCRNW 307 (310)
Q Consensus 303 ~~~~~ 307 (310)
..|+.
T Consensus 240 h~G~~ 244 (517)
T PF12569_consen 240 HAGDL 244 (517)
T ss_pred HCCCH
Confidence 88863
No 122
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.25 E-value=2.2e-07 Score=77.13 Aligned_cols=84 Identities=20% Similarity=0.198 Sum_probs=46.2
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch----hhHHHhhccchhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ----KAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~----~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
.+++.+.|.+++. +-|.++.+|.+|+.++..+|+.++|++++++|+++.-+. -.+|.+||.+|..+|+-+.|..
T Consensus 59 Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 59 LDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred hHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence 3445555555555 555555555555555555555555555555555554322 2345555555555555555555
Q ss_pred hhhhhhccCC
Q 021611 180 QFRIDVAQNP 189 (310)
Q Consensus 180 ~f~~Al~l~P 189 (310)
+|+.+.++-.
T Consensus 137 DFe~AA~LGS 146 (175)
T KOG4555|consen 137 DFEAAAQLGS 146 (175)
T ss_pred hHHHHHHhCC
Confidence 5555554443
No 123
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.24 E-value=3e-07 Score=85.34 Aligned_cols=90 Identities=8% Similarity=0.106 Sum_probs=81.0
Q ss_pred hcccchhhhhhhhcCCCCchhH---HHHHHHhhhhheeccccccchhhhhhccccCcc---hhhHHHhhccchhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR---QKAYLWQRGLSLYYLDRFE 175 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~---~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~---~~~a~~~~G~a~~~lg~~~ 175 (310)
+.+.+|...|..++. ..|++ +.+++.+|.+|+..|++++|+..|.++++..|+ .+.+++.+|.++..+|+++
T Consensus 157 ~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 157 SRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred CCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 345678888888887 88887 589999999999999999999999999999887 4789999999999999999
Q ss_pred hhhhhhhhhhccCCCCCc
Q 021611 176 EGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 176 eA~~~f~~Al~l~P~d~~ 193 (310)
+|+..|++.++..|+...
T Consensus 235 ~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 235 KAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHCcCCHH
Confidence 999999999999998753
No 124
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.23 E-value=1.7e-06 Score=90.19 Aligned_cols=175 Identities=10% Similarity=-0.037 Sum_probs=90.7
Q ss_pred HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc--cCCCCCccceeeeeh--
Q 021611 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA--QNPNDTEESIWCFLC-- 201 (310)
Q Consensus 126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~--l~P~d~~~~~~~~l~-- 201 (310)
.+..+...|.+.|+.++|...|++..+ | +...|..+...|.+.|+.++|++.|++..+ +.|+.. .+..+.
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~---T~~~ll~a 435 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV---TFLAVLSA 435 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHH
Confidence 334444444455555555555555433 2 233445555555555555555555555444 233321 111111
Q ss_pred hhhhcChHHHHHhHHHhcC----CChh-hHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHH
Q 021611 202 EAQLYGVDEARNRFLEVGR----DPRP-VMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKL 276 (310)
Q Consensus 202 ~a~l~~~~eA~~~l~~~~~----d~~~-~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~ 276 (310)
..+.|..++|...+..... .|.. .+.-...++...|+.++|.+.+...+-.+....+..+...+...|+.+.|+.
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 1144555555555544321 1211 1112223455567777777766533221222233445556667888888888
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 277 HILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 277 ~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
.+++.+++.. .+...+..|...++..|+|.
T Consensus 516 ~~~~l~~~~p--~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 516 AAEKLYGMGP--EKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHHHhCCCC--CCCcchHHHHHHHHhCCCHH
Confidence 8888877432 23345678888899999885
No 125
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.22 E-value=2.8e-07 Score=66.95 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=53.8
Q ss_pred hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhc-ChHHHHHhHHHh
Q 021611 157 QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY-GVDEARNRFLEV 218 (310)
Q Consensus 157 ~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~-~~~eA~~~l~~~ 218 (310)
++..|..+|.+++..|+|++|+..|+++++++|+++.++.+++.+..++| ++++|+..+.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999886666666666888 699999988763
No 126
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.21 E-value=2.5e-07 Score=87.51 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=80.0
Q ss_pred HHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhc
Q 021611 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY 206 (310)
Q Consensus 127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~ 206 (310)
.-.+|+-|+.+|+|+|||.+|.++|.++|.++..+.+|+.+|+++.+|..|..+...|+.+|.....++..+..+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999999999999999999999999999999999876665555544444688
Q ss_pred ChHHHHHhHHH
Q 021611 207 GVDEARNRFLE 217 (310)
Q Consensus 207 ~~~eA~~~l~~ 217 (310)
..+||..+...
T Consensus 180 ~~~EAKkD~E~ 190 (536)
T KOG4648|consen 180 NNMEAKKDCET 190 (536)
T ss_pred hHHHHHHhHHH
Confidence 88998887654
No 127
>PRK15331 chaperone protein SicA; Provisional
Probab=98.18 E-value=3.2e-07 Score=78.91 Aligned_cols=87 Identities=7% Similarity=0.027 Sum_probs=80.3
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
-..+|..+|..+.. .+|.++..|+.+|.++..+|+|++|+..|..|..++++++...+..|.+++.+|+.++|..+|.
T Consensus 52 k~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 52 RLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred CHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHH
Confidence 45678888887777 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCC
Q 021611 183 IDVAQNPNDT 192 (310)
Q Consensus 183 ~Al~l~P~d~ 192 (310)
.+++ +|.+.
T Consensus 130 ~a~~-~~~~~ 138 (165)
T PRK15331 130 LVNE-RTEDE 138 (165)
T ss_pred HHHh-CcchH
Confidence 9998 56554
No 128
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.17 E-value=1.9e-06 Score=86.94 Aligned_cols=137 Identities=15% Similarity=0.022 Sum_probs=99.0
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh--h
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC--E 202 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~--~ 202 (310)
.+++.++..|...|++++|++.+++||+..|+.++.|+.+|.++-..|++++|.+.++.|-++|+.|-. ++.-.+ .
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy--iNsK~aKy~ 272 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY--INSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH--HHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999999999999999999998753 221111 2
Q ss_pred hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhh
Q 021611 203 AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAAC 282 (310)
Q Consensus 203 a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl 282 (310)
.+.|+.++|...+..-..+.......+. + -...+...--|..|..+|++..|+..|....
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~----------~----------mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLN----------D----------MQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHH----------H----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2567777776665432111100000000 0 0112222236778888888888888888877
Q ss_pred c
Q 021611 283 E 283 (310)
Q Consensus 283 ~ 283 (310)
+
T Consensus 333 k 333 (517)
T PF12569_consen 333 K 333 (517)
T ss_pred H
Confidence 6
No 129
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.6e-06 Score=81.38 Aligned_cols=155 Identities=15% Similarity=0.074 Sum_probs=119.0
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh-
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE- 202 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~- 202 (310)
+.-|+.-|..++..++++.|+..-+|+|+.+|++..++..+|.++..+||.++|+-.|+.|..+.|-+.+. +.++..
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~--Y~GL~hs 377 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI--YRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH--HHHHHHH
Confidence 45677777888888999999999999999999999999999999999999999999999999999977663 444433
Q ss_pred -hhhcChHHHHHhHHHhc---CCChhhHHHHHHhh------cCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccc
Q 021611 203 -AQLYGVDEARNRFLEVG---RDPRPVMREAYNMF------KGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKK 270 (310)
Q Consensus 203 -a~l~~~~eA~~~l~~~~---~d~~~~~~~a~~l~------~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~ 270 (310)
...|++.||......+. +... ....++ ......|+|.+.++.. .+|+...|-..++.++...|+
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~sA----~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNSA----RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP 453 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcch----hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc
Confidence 35688888876544321 1111 112222 2223357788777644 467777787788899999999
Q ss_pred hhhHHHHHHHhhcC
Q 021611 271 ADAAKLHILAACES 284 (310)
Q Consensus 271 ~d~A~~~~~kAl~~ 284 (310)
++.++..+++++.+
T Consensus 454 ~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 454 TKDIIKLLEKHLII 467 (564)
T ss_pred cchHHHHHHHHHhh
Confidence 99999999999994
No 130
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.15 E-value=7e-07 Score=84.38 Aligned_cols=86 Identities=16% Similarity=0.235 Sum_probs=70.7
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
.+..+.+.++.+|. ++|.++..|-.|+.+++.+++...|+.+++.|++++|+....|-.+|.++..+|+|++|..+|+
T Consensus 129 ~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 129 EFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred chhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45567777777777 8888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhhccCCC
Q 021611 183 IDVAQNPN 190 (310)
Q Consensus 183 ~Al~l~P~ 190 (310)
.+.+++-+
T Consensus 207 ~a~kld~d 214 (377)
T KOG1308|consen 207 LACKLDYD 214 (377)
T ss_pred HHHhcccc
Confidence 88887754
No 131
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.14 E-value=5.3e-06 Score=86.53 Aligned_cols=114 Identities=11% Similarity=0.004 Sum_probs=65.9
Q ss_pred ccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccc--cCcchhhHHHhhccchhhhhhhh
Q 021611 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE--LDPRQKAYLWQRGLSLYYLDRFE 175 (310)
Q Consensus 98 ~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~--l~P~~~~a~~~~G~a~~~lg~~~ 175 (310)
+.+.+...+|..+|+... +.+...|..+...|.+.|++++|++.|++..+ +.|+. ..+..+..++.+.|+++
T Consensus 269 y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~-~t~~~ll~a~~~~g~~~ 342 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ-FTFSIMIRIFSRLALLE 342 (697)
T ss_pred HHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhccchH
Confidence 334444555666665433 34677888888888888888888888888754 34543 34555666666666666
Q ss_pred hhhhhhhhhhccCCCCCccceeeeehh--hhhcChHHHHHhHHHh
Q 021611 176 EGAEQFRIDVAQNPNDTEESIWCFLCE--AQLYGVDEARNRFLEV 218 (310)
Q Consensus 176 eA~~~f~~Al~l~P~d~~~~~~~~l~~--a~l~~~~eA~~~l~~~ 218 (310)
+|.+.+...++.... +....+..+.. .+.|+.++|...|.++
T Consensus 343 ~a~~i~~~m~~~g~~-~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 343 HAKQAHAGLIRTGFP-LDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHhCCC-CCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 666666666655421 11112222221 2445555555555543
No 132
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.14 E-value=2.1e-06 Score=89.98 Aligned_cols=176 Identities=14% Similarity=0.013 Sum_probs=126.6
Q ss_pred chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV 185 (310)
Q Consensus 106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al 185 (310)
.+...+=+++. ++|+.+.+|-.+|..|...-+...|-.+|++|.++||.+..+.-..+..+.+..++++|.+..-.+-
T Consensus 476 ~al~ali~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 476 LALHALIRALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34444545666 8999999999999999988899999999999999999998888778888888888888888766666
Q ss_pred ccCCCCCccceeeeehhh--hhcChHHHHHhHHHhc-CCChhh--HHHHHHhhcCCCChHHHHHHhc--CCCCcchhHhh
Q 021611 186 AQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVG-RDPRPV--MREAYNMFKGGGDPEKLVAAFS--SGRENEYFYAS 258 (310)
Q Consensus 186 ~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~-~d~~~~--~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a~ 258 (310)
+.+|-......|..++.. .-++.-.|+..++.+- .||.+. +.-+...|-..|++..+++.+. ...+|+..++.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 666655444455444444 4455666777666532 233322 2222233445677777777774 34567778888
Q ss_pred hhhhhhhhhccchhhHHHHHHHhhc
Q 021611 259 LYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 259 ~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
|..+......|.+.+|...+...+.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8888888889999999988888776
No 133
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.13 E-value=9.4e-07 Score=89.35 Aligned_cols=74 Identities=11% Similarity=0.043 Sum_probs=70.0
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
.+|.++.+|.-+|..+...|++++|...|++|++++|+ +.+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 47788899999999999999999999999999999994 789999999999999999999999999999999885
No 134
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.12 E-value=1.1e-06 Score=86.16 Aligned_cols=69 Identities=25% Similarity=0.231 Sum_probs=59.2
Q ss_pred ccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc---ceeeeehhhhhcChHHHHHhHHHhcC
Q 021611 152 ELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE---SIWCFLCEAQLYGVDEARNRFLEVGR 220 (310)
Q Consensus 152 ~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~---~~~~~l~~a~l~~~~eA~~~l~~~~~ 220 (310)
+-+|+++.+++++|.+|+.+|+|++|+..|+++++++|+++++ +++.+-+++.+|+.++|++++.++..
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999864 34444455689999999999887543
No 135
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.12 E-value=3.6e-06 Score=86.35 Aligned_cols=132 Identities=20% Similarity=0.194 Sum_probs=103.2
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh-
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA- 203 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a- 203 (310)
..|...+..+...+..++|..+..+|-+++|..+..|+.+|..+...|.++||.+.|..|+.+||+++.. ...++..
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s--~~Ala~~l 728 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS--MTALAELL 728 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH--HHHHHHHH
Confidence 6888999999999999999999999999999999999999999999999999999999999999999763 2222221
Q ss_pred -hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhh
Q 021611 204 -QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAAC 282 (310)
Q Consensus 204 -~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl 282 (310)
+.|+..-| ....++ ... ...+|....+|+++|.++..+|+.++|-++|..|+
T Consensus 729 le~G~~~la----------------~~~~~L----------~da-lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 729 LELGSPRLA----------------EKRSLL----------SDA-LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHhCCcchH----------------HHHHHH----------HHH-HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 22211111 010011 111 11345667899999999999999999999999999
Q ss_pred cCC
Q 021611 283 ESP 285 (310)
Q Consensus 283 ~~~ 285 (310)
++.
T Consensus 782 qLe 784 (799)
T KOG4162|consen 782 QLE 784 (799)
T ss_pred hhc
Confidence 864
No 136
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.09 E-value=3.5e-06 Score=70.11 Aligned_cols=65 Identities=18% Similarity=0.216 Sum_probs=59.7
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCC
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P 189 (310)
..+-..|.++...|+.++|++-|.++|.+-|..+.+|+||+.++.-.|+.++|++++++++++.-
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence 45556788999999999999999999999999999999999999999999999999999999865
No 137
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.09 E-value=9e-06 Score=82.37 Aligned_cols=200 Identities=16% Similarity=0.128 Sum_probs=153.5
Q ss_pred chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
++....-+...|-.++. ..|..-..|....+.--.-|..++-.+.|++|+.--|.....|...+.-+...|+..+|..
T Consensus 528 k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred hcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHH
Confidence 33344445566666777 8999999999999988889999999999999999999998899888999999999999999
Q ss_pred hhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcC---CChhhHHHHHHhhcCCCChHHHHHHhcCCC--Cc
Q 021611 180 QFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGR---DPRPVMREAYNMFKGGGDPEKLVAAFSSGR--EN 252 (310)
Q Consensus 180 ~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~---d~~~~~~~a~~l~~~~~~~e~al~~~~~~~--~~ 252 (310)
.+..+++.+|++-+ +|...... ....+++|+..+.++-. ..+..|.- ..+..-++..+++++.++... -|
T Consensus 606 il~~af~~~pnsee--iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs-~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 606 ILDQAFEANPNSEE--IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKS-ANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred HHHHHHHhCCCcHH--HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHH-hHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 99999999998655 66654333 34568899888877432 23333322 234444667888888776332 34
Q ss_pred chhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 253 EYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 253 d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
+..-.+..+|.+++++++++.|+..|...++.- +.+...|..|+++....|+
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c--P~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC--PNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--CCCchHHHHHHHHHHHhcc
Confidence 555566779999999999999999999999842 2467888899998887764
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.09 E-value=3.1e-06 Score=89.73 Aligned_cols=84 Identities=5% Similarity=-0.072 Sum_probs=75.3
Q ss_pred hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
..+.|.++-.+..+|.+..+|..+..++...|++++|++.++.+++.+|+....|+..|.+++..+++++|.-. .++.
T Consensus 14 ~ee~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~ 91 (906)
T PRK14720 14 NEEKWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID 91 (906)
T ss_pred hhhhhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh
Confidence 45778877666789999999999999999999999999999999999999999999999999999999999888 7777
Q ss_pred cCCCCC
Q 021611 187 QNPNDT 192 (310)
Q Consensus 187 l~P~d~ 192 (310)
+-+.+.
T Consensus 92 ~~~~~~ 97 (906)
T PRK14720 92 SFSQNL 97 (906)
T ss_pred hccccc
Confidence 666554
No 139
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.06 E-value=8.2e-07 Score=65.13 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=55.8
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhc
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRG 165 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G 165 (310)
.+..+...++.++. ++|+++..|+.+|.++..+|++++|+++|++++++.|+++.+...+.
T Consensus 10 ~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 10 DYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 56778999999998 99999999999999999999999999999999999999887765544
No 140
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.06 E-value=1.4e-05 Score=86.97 Aligned_cols=62 Identities=11% Similarity=-0.010 Sum_probs=27.9
Q ss_pred HHHHHhhhhheeccccccchhhhhhccc----cCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIE----LDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~----l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l 187 (310)
..|..+-..+.+.|++++|.+.|++..+ +.|+ ...|..+-.++.+.|++++|.+.|+...+.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3444444444444555555555544432 2333 123333334444455555555555554444
No 141
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.05 E-value=1.8e-06 Score=88.43 Aligned_cols=98 Identities=22% Similarity=0.258 Sum_probs=91.0
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh--hhhhhhccCCCCCccce
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE--QFRIDVAQNPNDTEESI 196 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~--~f~~Al~l~P~d~~~~~ 196 (310)
++|-.+..|+.+|..+..+|..+||.+.|..|+.+||+++.....+|.++.+.|+-.-|.+ .+..+++++|.+++ +
T Consensus 679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e--a 756 (799)
T KOG4162|consen 679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE--A 756 (799)
T ss_pred cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH--H
Confidence 8889999999999999999999999999999999999999999999999999999888888 99999999999988 6
Q ss_pred eeeehhh--hhcChHHHHHhHHHh
Q 021611 197 WCFLCEA--QLYGVDEARNRFLEV 218 (310)
Q Consensus 197 ~~~l~~a--~l~~~~eA~~~l~~~ 218 (310)
|++++.. ++|+.++|.++|...
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHH
Confidence 8888776 789999999998753
No 142
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=1.3e-05 Score=78.51 Aligned_cols=161 Identities=17% Similarity=0.137 Sum_probs=121.8
Q ss_pred HHHHHHHhhhhheec--cccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611 123 EAVVAIRRGMLLFRQ--GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL 200 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~--g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l 200 (310)
-..+-.++.+.++.+ .++.+|-..-+.|+.++.-++.+..+.|.+-+.-|+++.|.+.|++++.-+....++.+..++
T Consensus 453 ~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl 532 (840)
T KOG2003|consen 453 ASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL 532 (840)
T ss_pred hHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc
Confidence 345667777777774 478899999999999999999999999999999999999999999999988877787777777
Q ss_pred hhhhhcChHHHHHhHHHhcC---CChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHH
Q 021611 201 CEAQLYGVDEARNRFLEVGR---DPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAK 275 (310)
Q Consensus 201 ~~a~l~~~~eA~~~l~~~~~---d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~ 275 (310)
....+|+.+||+++|.++.. ....++-.....|....++.++++.+... .-|.+....--+|.+|.+.|+-.+|+
T Consensus 533 t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 77799999999999988532 33333333334455555666776665421 11222223335899999999999999
Q ss_pred HHHHHhhc
Q 021611 276 LHILAACE 283 (310)
Q Consensus 276 ~~~~kAl~ 283 (310)
+++-..-+
T Consensus 613 q~~ydsyr 620 (840)
T KOG2003|consen 613 QCHYDSYR 620 (840)
T ss_pred hhhhhccc
Confidence 98766555
No 143
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.05 E-value=9.8e-07 Score=56.20 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=26.7
Q ss_pred hhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611 147 FDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 147 f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
|+|||+++|+++.+|+++|.++...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678888888888888888888888888888763
No 144
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=8.6e-06 Score=75.93 Aligned_cols=118 Identities=14% Similarity=0.021 Sum_probs=87.3
Q ss_pred cccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc
Q 021611 140 VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG 219 (310)
Q Consensus 140 ~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~ 219 (310)
.++-+.-.+..++-||++.+.|..+|.+|..+|+++.|...|++|+++.|++++. +.+++.+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~aea---------------- 199 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI--LLGLAEA---------------- 199 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHHHHH----------------
Confidence 4455667788899999999999999999999999999999999999999999873 2222221
Q ss_pred CCChhhHHHHHHhhcCCCChHHHHHHhc--CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611 220 RDPRPVMREAYNMFKGGGDPEKLVAAFS--SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESP 285 (310)
Q Consensus 220 ~d~~~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~ 285 (310)
+.+-.++..-.++...+. ...++....+.+++|..+..+|++.+|...+++-+++.
T Consensus 200 ----------L~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 200 ----------LYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred ----------HHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 111111112222333332 22345567788899999999999999999999999954
No 145
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.01 E-value=2.3e-05 Score=85.42 Aligned_cols=204 Identities=12% Similarity=0.026 Sum_probs=133.6
Q ss_pred ccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccc--cCcchhhHHHhhccchhhhhhhh
Q 021611 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE--LDPRQKAYLWQRGLSLYYLDRFE 175 (310)
Q Consensus 98 ~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~--l~P~~~~a~~~~G~a~~~lg~~~ 175 (310)
+-+.+...+|..++++.......| |...|..+-..|.+.|++++|++.|++..+ +.|+ ...|..+-.++.+.|+++
T Consensus 482 y~k~G~vd~A~~vf~eM~~~Gv~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~d 559 (1060)
T PLN03218 482 CAKSGKVDAMFEVFHEMVNAGVEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVD 559 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHH
Confidence 344455667777787776422445 467888999999999999999999998855 4565 566778888899999999
Q ss_pred hhhhhhhhhhc----cCCCCCccceeeee--hhhhhcChHHHHHhHHHhcCC---Chh-hHHHHHHhhcCCCChHHHHHH
Q 021611 176 EGAEQFRIDVA----QNPNDTEESIWCFL--CEAQLYGVDEARNRFLEVGRD---PRP-VMREAYNMFKGGGDPEKLVAA 245 (310)
Q Consensus 176 eA~~~f~~Al~----l~P~d~~~~~~~~l--~~a~l~~~~eA~~~l~~~~~d---~~~-~~~~a~~l~~~~~~~e~al~~ 245 (310)
+|.+.|++..+ +.|+. ..+..+ +..+.|++++|.+.+.++... +.+ .+..+...+...|+.++|+..
T Consensus 560 eA~~lf~eM~~~~~gi~PD~---vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 560 RAFDVLAEMKAETHPIDPDH---ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHHHHHHHHHhcCCCCCcH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999875 35543 233333 233778899998888764331 221 223333445556777777776
Q ss_pred hc----CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 246 FS----SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 246 ~~----~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
+. ....|+ ...+..+...+...|++++|++.+++..+.... .+...+..|..+++++|+|.
T Consensus 637 f~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~-pd~~tynsLI~ay~k~G~~e 701 (1060)
T PLN03218 637 YDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK-LGTVSYSSLMGACSNAKNWK 701 (1060)
T ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCCHH
Confidence 64 222333 222334555667777888888888777763222 23455567777777777653
No 146
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.01 E-value=1.2e-06 Score=54.98 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=16.5
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcc
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~ 156 (310)
.+|+++|.++..+|++++|+.+|++||+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 147
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.00 E-value=8e-06 Score=82.52 Aligned_cols=174 Identities=13% Similarity=0.064 Sum_probs=126.9
Q ss_pred cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
.+|....-..+. .+|.+..-|..+|.++...++|++||.+|..|+.++|++...+..++....++|+|+...+.-.+.
T Consensus 58 ~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~L 135 (700)
T KOG1156|consen 58 EEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQL 135 (700)
T ss_pred HHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 356566656666 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCccceeeeehhh--hhcChHHHHHhHHHh---c-CCChhh-H--HH--HH---HhhcCCCChHHHHHHhcCCC
Q 021611 185 VAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEV---G-RDPRPV-M--RE--AY---NMFKGGGDPEKLVAAFSSGR 250 (310)
Q Consensus 185 l~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~---~-~d~~~~-~--~~--a~---~l~~~~~~~e~al~~~~~~~ 250 (310)
++++|..-. .|.+.+.+ ..|++..|...+..- . ..+.+. . .+ .| .+.. .|..+++++.+....
T Consensus 136 Lql~~~~ra--~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E-~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 136 LQLRPSQRA--SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE-AGSLQKALEHLLDNE 212 (700)
T ss_pred HHhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHhhh
Confidence 999997654 66666555 567888887765442 1 112211 1 01 11 1122 344566666554222
Q ss_pred C--cchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 251 E--NEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 251 ~--~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
+ .|.+...--.+.++..+|++++|...|+.-+.
T Consensus 213 ~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 213 KQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred hHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 1 22233333478899999999999999999998
No 148
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.00 E-value=2.8e-06 Score=80.33 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=80.2
Q ss_pred hhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHH
Q 021611 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDE 210 (310)
Q Consensus 131 G~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~e 210 (310)
+.-.+..|.+++||++|.++|+++|.....|-.||.++.++++...|+.++..++++||+.+..+-|++.+.+.+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 34456679999999999999999999999999999999999999999999999999999999888889888889999999
Q ss_pred HHHhHHHh
Q 021611 211 ARNRFLEV 218 (310)
Q Consensus 211 A~~~l~~~ 218 (310)
|..++..+
T Consensus 201 aa~dl~~a 208 (377)
T KOG1308|consen 201 AAHDLALA 208 (377)
T ss_pred HHHHHHHH
Confidence 98887654
No 149
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.99 E-value=1.8e-06 Score=57.84 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=34.2
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhcc
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGL 166 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~ 166 (310)
|.+|+.+|.+|..+|++++|++.|+++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4577788888888888888888888888888888888877764
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.99 E-value=2.6e-06 Score=71.48 Aligned_cols=108 Identities=16% Similarity=0.147 Sum_probs=79.4
Q ss_pred cchhhhhhhhcCCCCchhH---HHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhh
Q 021611 105 PSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGA 178 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~---~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~ 178 (310)
..+...++.++. .+|+. ..+.+.+|.+++..|++++|++.|++++...|+. +.+.+.++.++...|+|++|+
T Consensus 28 ~~~~~~~~~l~~--~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al 105 (145)
T PF09976_consen 28 AKAEAAAEQLAK--DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEAL 105 (145)
T ss_pred HHHHHHHHHHHH--HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 334555666665 55554 7899999999999999999999999999988765 568889999999999999999
Q ss_pred hhhhhhhccCCCCCccceeeeeh--hhhhcChHHHHHhHHH
Q 021611 179 EQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFLE 217 (310)
Q Consensus 179 ~~f~~Al~l~P~d~~~~~~~~l~--~a~l~~~~eA~~~l~~ 217 (310)
..++.. .-++ ..+.++..++ ....|+.++|+..+.+
T Consensus 106 ~~L~~~-~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 106 ATLQQI-PDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHhc-cCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999762 2122 2222222233 3367778888777664
No 151
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.97 E-value=9.6e-06 Score=72.10 Aligned_cols=158 Identities=17% Similarity=0.173 Sum_probs=102.2
Q ss_pred cccchhhhhhhhcCCCCch---hHHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhh----
Q 021611 103 FIPSVSGIWDALTGGNNNS---REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLD---- 172 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P---~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg---- 172 (310)
.+.+|...+.+++. ..| --+.+.+.+|.+++..|++++|+..|++.++..|++ +.+++.+|.+++.+.
T Consensus 20 ~y~~Ai~~f~~l~~--~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~ 97 (203)
T PF13525_consen 20 DYEEAIKLFEKLID--RYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL 97 (203)
T ss_dssp -HHHHHHHHHHHHH--H-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch
Confidence 45668888888876 444 466999999999999999999999999999999986 468999999987764
Q ss_pred -------hhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHH
Q 021611 173 -------RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAA 245 (310)
Q Consensus 173 -------~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~ 245 (310)
...+|+..|+..++.-|+...+ .+|...+..+........-.+..++...+.+.+|...
T Consensus 98 ~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 98 RSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp -TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred hcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 3458999999999999987642 2222222211110000000122344446777776655
Q ss_pred hcC-----CCCcchhHhhhhhhhhhhhccchhhHHH
Q 021611 246 FSS-----GRENEYFYASLYAGLFYESQKKADAAKL 276 (310)
Q Consensus 246 ~~~-----~~~~d~~~a~~~lG~~~~~~G~~d~A~~ 276 (310)
+.. +..+....+.+.++..|..+|..+.|..
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 541 1223345577789999999999885543
No 152
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.96 E-value=1.4e-05 Score=84.11 Aligned_cols=169 Identities=13% Similarity=0.001 Sum_probs=117.8
Q ss_pred eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh--hhhhcChHHHH
Q 021611 135 FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEAR 212 (310)
Q Consensus 135 ~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~--~a~l~~~~eA~ 212 (310)
...++...|+..|-++++++|.+..+|-.+|.+|...-+..-|..+|++|.++||.|.++ |.+.+ .+.....++|.
T Consensus 469 ~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea--aaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 469 CMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA--AAASADTYAEESTWEEAF 546 (1238)
T ss_pred HhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh--HHHHHHHhhccccHHHHH
Confidence 344668899999999999999999999999999999999999999999999999999874 44443 34667788888
Q ss_pred HhHHHhcC-CChhh----HHHHHHhhcCCCChHHHHHHhc--CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611 213 NRFLEVGR-DPRPV----MREAYNMFKGGGDPEKLVAAFS--SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESP 285 (310)
Q Consensus 213 ~~l~~~~~-d~~~~----~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~ 285 (310)
.....+.+ ++... +.....++-.-+..-+++..+. ....|.++..|..+|.+|...|++..|.+.|++|..++
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 87655443 22211 1111111111222223333332 22356678888889999999999999999999999954
Q ss_pred CCCCChHHHHHHHHHhhcccCC
Q 021611 286 YGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 286 ~~~~s~~~~~~la~~~~~~~~~ 307 (310)
. .+-=..+-.+..+|-+|.+
T Consensus 627 P--~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 627 P--LSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred c--HhHHHHHHHHHHHHHhhhH
Confidence 2 2212223447777776654
No 153
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=4.4e-06 Score=75.72 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=87.6
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
.++++...|.++|- ++|..+..|-+|++++++..+++...++..+|++++|+...+++.+|..+.....|++|+..+.
T Consensus 25 ~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 25 RYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 57788889999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccC---CCCCccceeeeehhhhhcCh
Q 021611 183 IDVAQN---PNDTEESIWCFLCEAQLYGV 208 (310)
Q Consensus 183 ~Al~l~---P~d~~~~~~~~l~~a~l~~~ 208 (310)
+|..+- |-.....++..|..++-.++
T Consensus 103 ra~sl~r~~~~~~~~di~~~L~~ak~~~w 131 (284)
T KOG4642|consen 103 RAYSLLREQPFTFGDDIPKALRDAKKKRW 131 (284)
T ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhCcc
Confidence 995532 11122235555555544433
No 154
>PLN03077 Protein ECB2; Provisional
Probab=97.93 E-value=3.8e-05 Score=82.00 Aligned_cols=168 Identities=12% Similarity=0.037 Sum_probs=120.5
Q ss_pred hhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc--cCCCCCccceeeee--hhhhhcC
Q 021611 132 MLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA--QNPNDTEESIWCFL--CEAQLYG 207 (310)
Q Consensus 132 ~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~--l~P~d~~~~~~~~l--~~a~l~~ 207 (310)
..|.+.|+.++|...|++. +.+...|..+...+.+.|+.++|++.|++..+ +.|+... +..+ +..+.|.
T Consensus 532 ~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T---~~~ll~a~~~~g~ 604 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT---FISLLCACSRSGM 604 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc---HHHHHHHHhhcCh
Confidence 6677889999999999986 44577888899999999999999999999877 4565432 2222 2236788
Q ss_pred hHHHHHhHHHhcC----CChh-hHHHHHHhhcCCCChHHHHHHhcCC-CCcchhHhhhhhhhhhhhccchhhHHHHHHHh
Q 021611 208 VDEARNRFLEVGR----DPRP-VMREAYNMFKGGGDPEKLVAAFSSG-RENEYFYASLYAGLFYESQKKADAAKLHILAA 281 (310)
Q Consensus 208 ~~eA~~~l~~~~~----d~~~-~~~~a~~l~~~~~~~e~al~~~~~~-~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kA 281 (310)
.++|...+.+... .|.. .+.-...++...|+.++|.+.++.- ..|+.. .+-.+-..+...|+.+.|+...++.
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~-~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPA-VWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999998876541 2332 2223344667788999998888743 344322 2222333456689999999999999
Q ss_pred hcCCCCCCChHHHHHHHHHhhcccCCcC
Q 021611 282 CESPYGQRSDDYMAALAKVHSLCRNWSS 309 (310)
Q Consensus 282 l~~~~~~~s~~~~~~la~~~~~~~~~~~ 309 (310)
+++.. .+..++..|+.++...|+|..
T Consensus 684 ~~l~p--~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 684 FELDP--NSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HhhCC--CCcchHHHHHHHHHHCCChHH
Confidence 98643 355788899999999999964
No 155
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.6e-06 Score=77.14 Aligned_cols=95 Identities=21% Similarity=0.207 Sum_probs=85.0
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 203 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a 203 (310)
+.-+-..|.-++.-.+|..|+..|.+||.++|..+.+|.+++.+++++.+|+.+..+-+++++++||...+++..+.+..
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 34455679999999999999999999999999999999999999999999999999999999999999887666666666
Q ss_pred hhcChHHHHHhHHHh
Q 021611 204 QLYGVDEARNRFLEV 218 (310)
Q Consensus 204 ~l~~~~eA~~~l~~~ 218 (310)
+.+++.+|+..+.++
T Consensus 90 ~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRA 104 (284)
T ss_pred hhccccHHHHHHHHH
Confidence 888899999988764
No 156
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=1.3e-05 Score=75.05 Aligned_cols=170 Identities=15% Similarity=0.111 Sum_probs=93.1
Q ss_pred eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHh
Q 021611 135 FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR 214 (310)
Q Consensus 135 ~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~ 214 (310)
++-.+|++||+...--.+.+|....++-.+|.+|+...+|.+|.++|++.-.+-|+...-.++..-.+-+.+.+..|++.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 55667777777777777777777777777777777777777777777777777775443222222222245566666665
Q ss_pred HHHhcCCChhhHHHH-----HHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCC
Q 021611 215 FLEVGRDPRPVMREA-----YNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQR 289 (310)
Q Consensus 215 l~~~~~d~~~~~~~a-----~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~ 289 (310)
+..+...+. ..... ...+. .++..-....++..+...........|-+..+.|++++|.+-|+.|++ .+.-
T Consensus 101 ~~~~~D~~~-L~~~~lqLqaAIkYs-e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq--vsGy 176 (459)
T KOG4340|consen 101 AFLLLDNPA-LHSRVLQLQAAIKYS-EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ--VSGY 176 (459)
T ss_pred HHHhcCCHH-HHHHHHHHHHHHhcc-cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh--hcCC
Confidence 544333211 11111 11111 222222222222111111222334566677777777777777777777 2233
Q ss_pred ChHHHHHHHHHhhcccCCc
Q 021611 290 SDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 290 s~~~~~~la~~~~~~~~~~ 308 (310)
.+-.-.++|.+|.+.|++-
T Consensus 177 qpllAYniALaHy~~~qya 195 (459)
T KOG4340|consen 177 QPLLAYNLALAHYSSRQYA 195 (459)
T ss_pred CchhHHHHHHHHHhhhhHH
Confidence 3345567777777777653
No 157
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.91 E-value=1.5e-05 Score=67.18 Aligned_cols=72 Identities=8% Similarity=0.122 Sum_probs=66.7
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE 194 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~ 194 (310)
.+..++..|...+..|+|++|++.|+......|.. ..+.+.+|-+++..|+|++|+..+++-++++|+++..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 46789999999999999999999999999999864 6789999999999999999999999999999998863
No 158
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.90 E-value=1.7e-06 Score=62.53 Aligned_cols=62 Identities=10% Similarity=0.083 Sum_probs=55.1
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhc
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRG 165 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G 165 (310)
+.+.+|...+.+++. .+|+++.+++.+|.+++.+|++++|.+.+++++..+|+++.++.-++
T Consensus 5 ~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 5 GDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp THHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 356779999999998 99999999999999999999999999999999999999877765554
No 159
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.87 E-value=4.1e-05 Score=73.64 Aligned_cols=204 Identities=17% Similarity=0.096 Sum_probs=122.1
Q ss_pred cccchhcccchhhhhhhhcCCCCch-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhh
Q 021611 97 TFTRRLFIPSVSGIWDALTGGNNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFE 175 (310)
Q Consensus 97 ~~~~~~~~~~a~~~~~~ai~~~~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~ 175 (310)
+-++++....+.....++-+ ..| +.-.....|...+..+||+..|.+..++++++.|.++....-.-.+|...|+|.
T Consensus 127 AA~qrgd~~~an~yL~eaae--~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~ 204 (400)
T COG3071 127 AAQQRGDEDRANRYLAEAAE--LAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQ 204 (400)
T ss_pred HHHhcccHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHH
Confidence 33444444444444444444 422 334667788888899999999999999999999999999888889999999998
Q ss_pred hhhhhhhhhhcc------------------------CCCCCcc--ceeeee------------hh----hhhcChHHHHH
Q 021611 176 EGAEQFRIDVAQ------------------------NPNDTEE--SIWCFL------------CE----AQLYGVDEARN 213 (310)
Q Consensus 176 eA~~~f~~Al~l------------------------~P~d~~~--~~~~~l------------~~----a~l~~~~eA~~ 213 (310)
+......+..+. ++++.+. .-|..+ +. .++|+.++|..
T Consensus 205 ~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 205 ALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHH
Confidence 888877665432 2222221 011111 00 12345555555
Q ss_pred hHHHhcC-CChhhHHHHHHhhcCCCChHHHHHHhc--CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCC
Q 021611 214 RFLEVGR-DPRPVMREAYNMFKGGGDPEKLVAAFS--SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRS 290 (310)
Q Consensus 214 ~l~~~~~-d~~~~~~~a~~l~~~~~~~e~al~~~~--~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s 290 (310)
.+.+.-+ .-++.....+-.. ..++++.-++.++ ....|+....+..+|.++...+.+.+|..+|+.|++ .+..
T Consensus 285 ~i~~~Lk~~~D~~L~~~~~~l-~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s- 360 (400)
T COG3071 285 IIEDALKRQWDPRLCRLIPRL-RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPS- 360 (400)
T ss_pred HHHHHHHhccChhHHHHHhhc-CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCC-
Confidence 4443222 1111111111111 1233333333332 112233345677899999999999999999999999 3333
Q ss_pred hHHHHHHHHHhhcccC
Q 021611 291 DDYMAALAKVHSLCRN 306 (310)
Q Consensus 291 ~~~~~~la~~~~~~~~ 306 (310)
...+.-+|+++.+.|.
T Consensus 361 ~~~~~~la~~~~~~g~ 376 (400)
T COG3071 361 ASDYAELADALDQLGE 376 (400)
T ss_pred hhhHHHHHHHHHHcCC
Confidence 3445778999888774
No 160
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.86 E-value=5.1e-06 Score=52.12 Aligned_cols=34 Identities=18% Similarity=0.429 Sum_probs=30.7
Q ss_pred hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611 158 KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND 191 (310)
Q Consensus 158 ~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d 191 (310)
+.+|+++|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3689999999999999999999999999999974
No 161
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.85 E-value=1.3e-05 Score=82.00 Aligned_cols=155 Identities=10% Similarity=0.075 Sum_probs=114.8
Q ss_pred CCCchhhhhhhhccCCCccc---ccccccccccCcccccCCCCccccchhcccchhhhhhhhcCCCCchhHHHHHHHhhh
Q 021611 56 NPPLYSFHRSLLTSKAPLSV---QTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGM 132 (310)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~ 132 (310)
|.|-+...-...++..-.+= +..++... .++++.+ -+.+.+.++ -+.++...|..... +||-....||.+|-
T Consensus 453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~-sarA~r~-~~~~~~~~~-~fs~~~~hle~sl~--~nplq~~~wf~~G~ 527 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI-SARAQRS-LALLILSNK-DFSEADKHLERSLE--INPLQLGTWFGLGC 527 (777)
T ss_pred CCCcchhHHHhhhhccChHHHHHHHHHhhhh-hHHHHHh-hccccccch-hHHHHHHHHHHHhh--cCccchhHHHhccH
Confidence 56666665555554443322 22232221 2333222 123333433 35567788888887 99999999999999
Q ss_pred hheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeee--ehhhhhcChHH
Q 021611 133 LLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCF--LCEAQLYGVDE 210 (310)
Q Consensus 133 ~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~--l~~a~l~~~~e 210 (310)
+.+++++++.|+.+|.+.+.++|++..+|.|+..+|.++|+-.+|-..+.+|++-|-++.. +|-+ +.....|.+++
T Consensus 528 ~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~--iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 528 AALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ--IWENYMLVSVDVGEFED 605 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe--eeechhhhhhhcccHHH
Confidence 9999999999999999999999999999999999999999999999999999999966665 5544 34447888988
Q ss_pred HHHhHHH
Q 021611 211 ARNRFLE 217 (310)
Q Consensus 211 A~~~l~~ 217 (310)
|...+.+
T Consensus 606 a~~A~~r 612 (777)
T KOG1128|consen 606 AIKAYHR 612 (777)
T ss_pred HHHHHHH
Confidence 8887654
No 162
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=3e-05 Score=77.83 Aligned_cols=186 Identities=11% Similarity=0.074 Sum_probs=118.4
Q ss_pred cccccCcccccCCCCccccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhH
Q 021611 81 SLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAY 160 (310)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a 160 (310)
.+++.++-|..++ -+.++..-.++++. +.|++..+....-.+++.+++|++|+...++-..+.-.+ ..
T Consensus 14 ~l~t~ln~~~~~~---------e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~ 81 (652)
T KOG2376|consen 14 ALLTDLNRHGKNG---------EYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SF 81 (652)
T ss_pred HHHHHHHHhccch---------HHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hh
Confidence 3445555554444 56678888899998 889999999999999999999999995544433222211 12
Q ss_pred HHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChh---hHHHHHHhhcCCC
Q 021611 161 LWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRP---VMREAYNMFKGGG 237 (310)
Q Consensus 161 ~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~---~~~~a~~l~~~~~ 237 (310)
.+.++.++|++++.|+|+++++ -.++.+.-..-.++-...+++++++|.+.++.+.....+ ....+ .+.....
T Consensus 82 ~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~-nl~a~~a 157 (652)
T KOG2376|consen 82 FFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRA-NLLAVAA 157 (652)
T ss_pred hHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHH-HHHHHHH
Confidence 2689999999999999999999 344444321111222233789999999998876432111 11111 1111000
Q ss_pred C-hHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 238 D-PEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 238 ~-~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
. ..+.+......+ -+.....|+.+-.+...|++.+|++.+++|++
T Consensus 158 ~l~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 158 ALQVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred hhhHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 0 000122212222 23455677899999999999999999999943
No 163
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=3.4e-05 Score=70.58 Aligned_cols=108 Identities=18% Similarity=0.139 Sum_probs=60.9
Q ss_pred chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV 185 (310)
Q Consensus 106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al 185 (310)
.|...|++.-. .-|+++..-...|+.+-..|++++|++.|+..++-||++...+-.+-.+.-.+|+--+|++.+...+
T Consensus 70 lAq~C~~~L~~--~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL 147 (289)
T KOG3060|consen 70 LAQKCINQLRD--RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYL 147 (289)
T ss_pred HHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34445554443 3366666666666666666666666666666666666665555544445555566666666666666
Q ss_pred ccCCCCCccceeeeehhh--hhcChHHHHHhHHH
Q 021611 186 AQNPNDTEESIWCFLCEA--QLYGVDEARNRFLE 217 (310)
Q Consensus 186 ~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~ 217 (310)
+.=++|.+ +|..++.. ..|++++|.-++.+
T Consensus 148 ~~F~~D~E--AW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 148 DKFMNDQE--AWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred HHhcCcHH--HHHHHHHHHHhHhHHHHHHHHHHH
Confidence 66666655 45555443 34555555555544
No 164
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=2e-05 Score=74.27 Aligned_cols=79 Identities=13% Similarity=0.118 Sum_probs=41.7
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch-----hhHHHhhccchhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-----KAYLWQRGLSLYYLDRFEEGA 178 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-----~~a~~~~G~a~~~lg~~~eA~ 178 (310)
.+.|.++|-.... .+|...++++.+|..+.+.|..+.||..-+. +-..|+. .-+...+|.=|...|-+|.|.
T Consensus 51 ~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~-L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 51 PDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQT-LLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHH-HhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3445555555554 5666666666666666666666666554332 2223432 234445555555555556665
Q ss_pred hhhhhhh
Q 021611 179 EQFRIDV 185 (310)
Q Consensus 179 ~~f~~Al 185 (310)
+.|...+
T Consensus 128 ~~f~~L~ 134 (389)
T COG2956 128 DIFNQLV 134 (389)
T ss_pred HHHHHHh
Confidence 5555544
No 165
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.78 E-value=1.1e-05 Score=50.21 Aligned_cols=33 Identities=27% Similarity=0.494 Sum_probs=19.6
Q ss_pred hHHHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611 159 AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND 191 (310)
Q Consensus 159 ~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d 191 (310)
.+++.+|.+++.+|++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 355566666666666666666666666666653
No 166
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.78 E-value=5.2e-06 Score=51.75 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=31.2
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcch
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~ 157 (310)
|.+|+.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999999999985
No 167
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.75 E-value=2.9e-05 Score=78.56 Aligned_cols=170 Identities=12% Similarity=0.070 Sum_probs=122.9
Q ss_pred hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
-....++++. ..|...+..-..|..+..+|+-++|.+....+++.||.....|.-.|+++....+|++|+++|+.|++
T Consensus 26 gLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~ 103 (700)
T KOG1156|consen 26 GLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK 103 (700)
T ss_pred HHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 4455566676 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccceeeeehhh--hhcChHHHHH---hHHHhcCCChhhH-HHHHHhhcCCCChHHHHHHh---cC----CCCc-
Q 021611 187 QNPNDTEESIWCFLCEA--QLYGVDEARN---RFLEVGRDPRPVM-REAYNMFKGGGDPEKLVAAF---SS----GREN- 252 (310)
Q Consensus 187 l~P~d~~~~~~~~l~~a--~l~~~~eA~~---~l~~~~~d~~~~~-~~a~~l~~~~~~~e~al~~~---~~----~~~~- 252 (310)
++|++.. +|+-++.. ++++++.... .+.+..+..+..+ +-+.+.+. .|.+..+...+ .. .+.+
T Consensus 104 ~~~dN~q--ilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L-~g~y~~A~~il~ef~~t~~~~~s~~ 180 (700)
T KOG1156|consen 104 IEKDNLQ--ILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL-LGEYKMALEILEEFEKTQNTSPSKE 180 (700)
T ss_pred cCCCcHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCCCHH
Confidence 9999976 67776655 5666554433 4455444433332 11211121 23343333322 21 1222
Q ss_pred --chhHhhhhhhhhhhhccchhhHHHHHHHh
Q 021611 253 --EYFYASLYAGLFYESQKKADAAKLHILAA 281 (310)
Q Consensus 253 --d~~~a~~~lG~~~~~~G~~d~A~~~~~kA 281 (310)
.......+....+...|..++|.+++..-
T Consensus 181 ~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 181 DYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 23455666777888899999998888653
No 168
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.72 E-value=9e-05 Score=69.94 Aligned_cols=184 Identities=16% Similarity=0.091 Sum_probs=110.3
Q ss_pred chhcccchhhhhhhhcCCCCchh-----HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhh
Q 021611 100 RRLFIPSVSGIWDALTGGNNNSR-----EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF 174 (310)
Q Consensus 100 ~~~~~~~a~~~~~~ai~~~~~P~-----~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~ 174 (310)
+||-.+.|..+-...+ ..|+ ...+.+.+|.-|+..|=++.|...|...+...-.-..|.-.+-.+|....+|
T Consensus 81 sRGEvDRAIRiHQ~L~---~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW 157 (389)
T COG2956 81 SRGEVDRAIRIHQTLL---ESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREW 157 (389)
T ss_pred hcchHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH
Confidence 3444455556554444 2332 3467778888888888888888888777665444466777777888888888
Q ss_pred hhhhhhhhhhhccCCCCCc---cceeeeehhh--hhcChHHHHHhHHHhcC-CCh---hhHHHHHHhhcCCCChHHHHHH
Q 021611 175 EEGAEQFRIDVAQNPNDTE---ESIWCFLCEA--QLYGVDEARNRFLEVGR-DPR---PVMREAYNMFKGGGDPEKLVAA 245 (310)
Q Consensus 175 ~eA~~~f~~Al~l~P~d~~---~~~~~~l~~a--~l~~~~eA~~~l~~~~~-d~~---~~~~~a~~l~~~~~~~e~al~~ 245 (310)
++|++.-++..++.|+... +.+++.++.. ...+.+.|...+.++.+ ++. ..+ ....+....|+++++++.
T Consensus 158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi-~lG~v~~~~g~y~~AV~~ 236 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI-ILGRVELAKGDYQKAVEA 236 (389)
T ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh-hhhHHHHhccchHHHHHH
Confidence 8888888887777776543 2333334333 22446666666665332 221 111 222344456777777666
Q ss_pred hcCC--CCcchh-HhhhhhhhhhhhccchhhHHHHHHHhhcCCCC
Q 021611 246 FSSG--RENEYF-YASLYAGLFYESQKKADAAKLHILAACESPYG 287 (310)
Q Consensus 246 ~~~~--~~~d~~-~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~ 287 (310)
++.. .+++.. ...-.+-.+|.++|+.++.+..++++.+...|
T Consensus 237 ~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 237 LERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 6532 233321 12223556788888888888888888874433
No 169
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=1.3e-05 Score=73.86 Aligned_cols=94 Identities=21% Similarity=0.249 Sum_probs=82.9
Q ss_pred HHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC---ccceeeee
Q 021611 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT---EESIWCFL 200 (310)
Q Consensus 127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~---~~~~~~~l 200 (310)
.|+.+.-++..|+|.+|.+.|..-|+.-|+. +.++|.+|.+++.+|+|++|...|..+++-.|+.+ ++.+..+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888999999999999999999999999986 68999999999999999999999999999988875 44555666
Q ss_pred hhhhhcChHHHHHhHHHhcC
Q 021611 201 CEAQLYGVDEARNRFLEVGR 220 (310)
Q Consensus 201 ~~a~l~~~~eA~~~l~~~~~ 220 (310)
+...+|+.++|...+.++.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 66789999999999888654
No 170
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=1.2e-05 Score=71.32 Aligned_cols=95 Identities=19% Similarity=0.241 Sum_probs=79.3
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcch-----hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-----KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC 198 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-----~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~ 198 (310)
+.-+-.-|+-++..|+|++|...|.+||++-|.- ...|.++|.++.+++.++.|+++..++++++|.+-.+...+
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 4556677999999999999999999999999853 45677999999999999999999999999999766544433
Q ss_pred eehhhhhcChHHHHHhHHHh
Q 021611 199 FLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 199 ~l~~a~l~~~~eA~~~l~~~ 218 (310)
.-+.-++..+++|+.++.++
T Consensus 175 Aeayek~ek~eealeDyKki 194 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKI 194 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHH
Confidence 43444678899999998875
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.70 E-value=1.7e-05 Score=65.10 Aligned_cols=88 Identities=18% Similarity=0.089 Sum_probs=75.3
Q ss_pred cchhcccchhhhhhhhcCCCC-chhHHHHHHHhhhhheeccccccchhhhhhccccCcc---hhhHHHhhccchhhhhhh
Q 021611 99 TRRLFIPSVSGIWDALTGGNN-NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR---QKAYLWQRGLSLYYLDRF 174 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~ai~~~~-~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~---~~~a~~~~G~a~~~lg~~ 174 (310)
+..|...+|..+|.+++...+ .+.-..+++.+|.++..+|++++|+..++++++-.|+ +.......+.++..+|++
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~ 91 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRP 91 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH
Confidence 334466789999999887423 4456789999999999999999999999999999898 777888899999999999
Q ss_pred hhhhhhhhhhhc
Q 021611 175 EEGAEQFRIDVA 186 (310)
Q Consensus 175 ~eA~~~f~~Al~ 186 (310)
+||++.+-.++.
T Consensus 92 ~eAl~~~l~~la 103 (120)
T PF12688_consen 92 KEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999988775
No 172
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.67 E-value=1.3e-05 Score=59.50 Aligned_cols=73 Identities=11% Similarity=0.028 Sum_probs=55.7
Q ss_pred cchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhc
Q 021611 155 PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFK 234 (310)
Q Consensus 155 P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~ 234 (310)
|+-..++.++|.++..+|+|++|++.|++++++......
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----------------------------------------- 40 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD----------------------------------------- 40 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-----------------------------------------
Confidence 667789999999999999999999999999977211100
Q ss_pred CCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 235 GGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 235 ~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
..++....+..+|.++..+|++++|+.+|++|++
T Consensus 41 ---------------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 41 ---------------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ---------------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0011123455799999999999999999999987
No 173
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.64 E-value=1.2e-05 Score=51.12 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=31.2
Q ss_pred hhhhhcCCCCchhHHHHHHHhhhhheeccccccchh
Q 021611 110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVA 145 (310)
Q Consensus 110 ~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~ 145 (310)
+|.++|. ++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3678888 999999999999999999999999974
No 174
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=4.3e-05 Score=69.90 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=83.0
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...+|.++|+.+++ -||.|..++..+-.+.-.+|+-.+||+..+.-++..|++.++|+.++.+|...|+|+.|.-|++
T Consensus 101 ~~~~A~e~y~~lL~--ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLE--DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhc--cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 56678888888888 8899999999888888899999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCc
Q 021611 183 IDVAQNPNDTE 193 (310)
Q Consensus 183 ~Al~l~P~d~~ 193 (310)
+.+-++|-++.
T Consensus 179 E~ll~~P~n~l 189 (289)
T KOG3060|consen 179 ELLLIQPFNPL 189 (289)
T ss_pred HHHHcCCCcHH
Confidence 99999997764
No 175
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=2.6e-05 Score=75.38 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=76.0
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhh-hhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEG-AEQFR 182 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA-~~~f~ 182 (310)
+..|...+++++. ++|+|..++|.||.++..+|+|+.|+.+|++|++++|++..+...+..+..+..++++. .+.|.
T Consensus 273 ~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468899999998 99999999999999999999999999999999999999999999999998888888877 66888
Q ss_pred hhhccCC
Q 021611 183 IDVAQNP 189 (310)
Q Consensus 183 ~Al~l~P 189 (310)
+.+..-+
T Consensus 351 ~mF~k~~ 357 (397)
T KOG0543|consen 351 NMFAKLA 357 (397)
T ss_pred HHhhccc
Confidence 8877654
No 176
>PLN03077 Protein ECB2; Provisional
Probab=97.61 E-value=0.00011 Score=78.54 Aligned_cols=179 Identities=12% Similarity=0.007 Sum_probs=120.0
Q ss_pred ccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccc--cCcchhhHHHhhccchhhhhhhh
Q 021611 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE--LDPRQKAYLWQRGLSLYYLDRFE 175 (310)
Q Consensus 98 ~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~--l~P~~~~a~~~~G~a~~~lg~~~ 175 (310)
+.+.+...+|...|+.. +.+...|..+...|...|+.++|++.|++..+ +.|+... +..+-.++.+.|+++
T Consensus 534 y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVT 606 (857)
T ss_pred HHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHH
Confidence 34444455565555543 45678999999999999999999999998776 5676443 444445788899999
Q ss_pred hhhhhhhhhhccCCCCCccceeeee--hhhhhcChHHHHHhHHHhcCCChhhH-HHHHHhhcCCCChHHHHHHhc--CCC
Q 021611 176 EGAEQFRIDVAQNPNDTEESIWCFL--CEAQLYGVDEARNRFLEVGRDPRPVM-REAYNMFKGGGDPEKLVAAFS--SGR 250 (310)
Q Consensus 176 eA~~~f~~Al~l~P~d~~~~~~~~l--~~a~l~~~~eA~~~l~~~~~d~~~~~-~~a~~l~~~~~~~e~al~~~~--~~~ 250 (310)
+|.+.|+...+..+-.|....+..+ +..+.|+++||.+.+.+....|.... ..+.......++.+.+....+ ...
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 9999999988543222221122222 23378999999999998754444432 222223344556555433332 123
Q ss_pred CcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 251 ENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 251 ~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
.|+....+..++.+|...|++++|.+..+...+
T Consensus 687 ~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 444555566789999999999999999988766
No 177
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.57 E-value=3.2e-05 Score=65.19 Aligned_cols=89 Identities=22% Similarity=0.316 Sum_probs=74.9
Q ss_pred cccchhhhhhhhcCCCCch---hHHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhh---
Q 021611 103 FIPSVSGIWDALTGGNNNS---REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDR--- 173 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P---~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~--- 173 (310)
.+.+|...|..+.. .-| -...+.+.+|-+++..|++++|++.+++-|+|+|++ +-+++.+|++++.+.+
T Consensus 25 ~Y~~A~~~le~L~~--ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~ 102 (142)
T PF13512_consen 25 NYEEAIKQLEALDT--RYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSL 102 (142)
T ss_pred CHHHHHHHHHHHHh--cCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHH
Confidence 35557777777655 444 456899999999999999999999999999999987 4678899999999987
Q ss_pred ------------hhhhhhhhhhhhccCCCCCc
Q 021611 174 ------------FEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 174 ------------~~eA~~~f~~Al~l~P~d~~ 193 (310)
..+|..+|++.++.=|+...
T Consensus 103 ~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 103 QSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred hhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 88899999999998887653
No 178
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.54 E-value=3.7e-05 Score=75.68 Aligned_cols=93 Identities=17% Similarity=0.130 Sum_probs=81.7
Q ss_pred HHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhc
Q 021611 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY 206 (310)
Q Consensus 127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~ 206 (310)
.-..+.-.+.-++|+.|+..|.|||+++|+.+..+-+|+.++.+.++|.+|+.++.+|++++|....+++.++.+-..++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556777888999999999999999999999999999999999999999999999999999988887676665555788
Q ss_pred ChHHHHHhHHHhc
Q 021611 207 GVDEARNRFLEVG 219 (310)
Q Consensus 207 ~~~eA~~~l~~~~ 219 (310)
++.+|...++...
T Consensus 87 ~~~~A~~~l~~~~ 99 (476)
T KOG0376|consen 87 EFKKALLDLEKVK 99 (476)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888743
No 179
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.51 E-value=2.2e-05 Score=52.49 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=36.1
Q ss_pred hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611 158 KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL 200 (310)
Q Consensus 158 ~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l 200 (310)
+.+++.+|.++..+|++++|++.|+++++.+|+|++ +|..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~--a~~~L 41 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPE--AWRAL 41 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH--HHHHh
Confidence 367899999999999999999999999999999987 45443
No 180
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.51 E-value=0.00044 Score=63.44 Aligned_cols=73 Identities=10% Similarity=0.127 Sum_probs=67.4
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccc
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEES 195 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~ 195 (310)
.+.-|++-|...++.|++++|+..|++.....|.. ..+.+.++.++++.++|++|+...++-+++.|+++.+.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 46789999999999999999999999999999975 57889999999999999999999999999999988743
No 181
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.50 E-value=0.00035 Score=65.80 Aligned_cols=148 Identities=13% Similarity=0.040 Sum_probs=86.2
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc---cee
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE---SIW 197 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~---~~~ 197 (310)
+.++....--|.++...|++++|+..+.+. +..+...-.-.++..++|++.|.+.++..-+.+.+..-. .+|
T Consensus 99 ~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~aw 173 (290)
T PF04733_consen 99 ESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAW 173 (290)
T ss_dssp -CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 356677788889999999999999999987 334455556678899999999999999998887754321 111
Q ss_pred eeehhhhhc--ChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHH
Q 021611 198 CFLCEAQLY--GVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAK 275 (310)
Q Consensus 198 ~~l~~a~l~--~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~ 275 (310)
.+ ...| ++.+|.-.|.++.... +........++.++..+|++++|.
T Consensus 174 v~---l~~g~e~~~~A~y~f~El~~~~-----------------------------~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 174 VN---LATGGEKYQDAFYIFEELSDKF-----------------------------GSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp HH---HHHTTTCCCHHHHHHHHHHCCS-------------------------------SHHHHHHHHHHHHHCT-HHHHH
T ss_pred HH---HHhCchhHHHHHHHHHHHHhcc-----------------------------CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 11 0112 2444444444432211 111222223555666666666666
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 276 LHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 276 ~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
..+.+|++.. +.+++.+.|+..+-.-.|+.
T Consensus 222 ~~L~~al~~~--~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 222 ELLEEALEKD--PNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHCCC---CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHhc--cCCHHHHHHHHHHHHHhCCC
Confidence 6666666522 23456666665555544443
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.28 E-value=0.00023 Score=69.25 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=102.9
Q ss_pred hhcccchhhhhhhhcCC--CCch--hHHHHHHHhhhhheeccccc-------------cchhhhhhccc-------cCc-
Q 021611 101 RLFIPSVSGIWDALTGG--NNNS--REAVVAIRRGMLLFRQGDVV-------------GSVAEFDKAIE-------LDP- 155 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~--~~~P--~~~~a~~~rG~~~~~~g~~~-------------eAl~~f~kAl~-------l~P- 155 (310)
.+-+.+|..++.+-+.. ++.. -...++|++|++|...|+.- |+-++|+.|.+ +--
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555543220 1111 23689999999999998753 33344444433 322
Q ss_pred -----chhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC----c--cceeeeehhhhhcChHHHHHhHHHh------
Q 021611 156 -----RQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT----E--ESIWCFLCEAQLYGVDEARNRFLEV------ 218 (310)
Q Consensus 156 -----~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~----~--~~~~~~l~~a~l~~~~eA~~~l~~~------ 218 (310)
....++-++|..||-+|+|+.|+..-+.=+++...+- + ++.+.+-|..-+|+++-|++.++..
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie 267 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE 267 (639)
T ss_pred hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH
Confidence 2345778999999999999999998888777755442 2 2233333444678888888876541
Q ss_pred -cCCChh---h--HHHHHHhhcCCCChHHHHHHhc--------CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 219 -GRDPRP---V--MREAYNMFKGGGDPEKLVAAFS--------SGRENEYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 219 -~~d~~~---~--~~~a~~l~~~~~~~e~al~~~~--------~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
+....+ . +...|.++ ..+++|+.... .........+...+|..+-.+|..++|+....+.+++
T Consensus 268 lg~r~vEAQscYSLgNtytll---~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 268 LGNRTVEAQSCYSLGNTYTLL---KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hcchhHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 111111 0 01122222 12444443331 1111223444555777777778888887777777775
No 183
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.25 E-value=9.3e-05 Score=72.47 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=88.4
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
...+..++.+... .+| ++...++.+++..++..+|+...+++++.+|.+...+...+..+...++++.|++..++
T Consensus 185 ~~~ai~lle~L~~--~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 185 YDEAIELLEKLRE--RDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred HHHHHHHHHHHHh--cCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3445566666555 444 56677899999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCccceeeeehh--hhhcChHHHHHhHHH
Q 021611 184 DVAQNPNDTEESIWCFLCE--AQLYGVDEARNRFLE 217 (310)
Q Consensus 184 Al~l~P~d~~~~~~~~l~~--a~l~~~~eA~~~l~~ 217 (310)
++++.|++-+. |..|+. .++|++++|+..+..
T Consensus 260 av~lsP~~f~~--W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 260 AVELSPSEFET--WYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHhCchhHHH--HHHHHHHHHhcCCHHHHHHHHhc
Confidence 99999988774 555554 489999999887654
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.21 E-value=0.0017 Score=60.59 Aligned_cols=158 Identities=12% Similarity=0.070 Sum_probs=92.1
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCc-----ch-hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP-----RQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW 197 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P-----~~-~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~ 197 (310)
++.|..-|..|-..|++++|.+.|.++.++.- .. ..++...|.++ +.+++++|++.|++|+++--
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~-------- 105 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYR-------- 105 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHH--------
Confidence 36677778889999999999999999977652 22 44555666665 44499999999999986521
Q ss_pred eeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCC-CChHHHHHHhc-------C-CCCcchhHhhhhhhhhhhhc
Q 021611 198 CFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGG-GDPEKLVAAFS-------S-GRENEYFYASLYAGLFYESQ 268 (310)
Q Consensus 198 ~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~-~~~e~al~~~~-------~-~~~~d~~~a~~~lG~~~~~~ 268 (310)
..|++..|...+.+ +..++... +++++|+..+. . ............++.++...
T Consensus 106 ------~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 106 ------EAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp ------HCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred ------hcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 22334444333332 11223333 44444443332 1 11111222334588899999
Q ss_pred cchhhHHHHHHHhhcCCC--CC---CChHHHHHHHHHhhcccCC
Q 021611 269 KKADAAKLHILAACESPY--GQ---RSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 269 G~~d~A~~~~~kAl~~~~--~~---~s~~~~~~la~~~~~~~~~ 307 (310)
|++++|+..|++.....- +. ..-+++.....+|+..|+.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~ 212 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDY 212 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-H
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCH
Confidence 999999999999887321 11 1124555566677777653
No 185
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.17 E-value=0.00031 Score=61.40 Aligned_cols=55 Identities=22% Similarity=0.297 Sum_probs=43.3
Q ss_pred cccchhhhhhccccCcchhhHHHhhccchhhhhhh----------hhhhhhhhhhhccCCCCCcc
Q 021611 140 VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF----------EEGAEQFRIDVAQNPNDTEE 194 (310)
Q Consensus 140 ~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~----------~eA~~~f~~Al~l~P~d~~~ 194 (310)
|+.|.+.++.....||.+.+++++.|.++..+.++ ++|+.-|++|+.++|+..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 56788899999999999999999999999988554 67888888899999987664
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.16 E-value=0.00092 Score=59.01 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHHHhhhhheeccccccchhhhhhccc-cCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIE-LDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND 191 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~-l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d 191 (310)
.-.+.+|.++..+|++.||..+|.+++. +.-+++.....++.+.+..+++.+|...+++..+-+|..
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 3456778888888888888888887664 455667777778888888888888888888888877754
No 187
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.0013 Score=66.43 Aligned_cols=120 Identities=14% Similarity=0.165 Sum_probs=80.1
Q ss_pred HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhh
Q 021611 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL 205 (310)
Q Consensus 126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l 205 (310)
+.+.--..+...|+|++|+...++.+...|++..++...-.++..+++|++|+...++-....-.+.- .+....|..++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHHHc
Confidence 33444455778899999999999999999999999999999999999999999654443332222111 02344566688
Q ss_pred cChHHHHHhHHHhcCCChhhHH-HHHHhhcCCCChHHHHHHhc
Q 021611 206 YGVDEARNRFLEVGRDPRPVMR-EAYNMFKGGGDPEKLVAAFS 247 (310)
Q Consensus 206 ~~~~eA~~~l~~~~~d~~~~~~-~a~~l~~~~~~~e~al~~~~ 247 (310)
++.++|+.++....++++.... .+-.+|. .+++++++..+.
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~ 134 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYR-LERYDEALDIYQ 134 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 8888888888765555442211 2222233 556666666554
No 188
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.14 E-value=0.00098 Score=71.17 Aligned_cols=184 Identities=14% Similarity=0.057 Sum_probs=112.3
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcc--------hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC---
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR--------QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT--- 192 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~--------~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~--- 192 (310)
..++..+|.++..+|++++|.+.+++++++-.. ....+..+|.+++..|++++|...+++++.+.....
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 356778899999999999999999999886321 223455789999999999999999999988643211
Q ss_pred ccceeeeeh--hhhhcChHHHHHhHHHhc---CC---ChhhHH----HHHHhhcCCCChHHHHHHhcCCCCcc--hh---
Q 021611 193 EESIWCFLC--EAQLYGVDEARNRFLEVG---RD---PRPVMR----EAYNMFKGGGDPEKLVAAFSSGRENE--YF--- 255 (310)
Q Consensus 193 ~~~~~~~l~--~a~l~~~~eA~~~l~~~~---~d---~~~~~~----~a~~l~~~~~~~e~al~~~~~~~~~d--~~--- 255 (310)
....+..++ ....|++++|...+.++. .. ...... .........|..+++...+.....+. ..
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhH
Confidence 111121122 225788888887765531 11 111100 01112223566666666553211111 11
Q ss_pred -HhhhhhhhhhhhccchhhHHHHHHHhhcC--CCCCC--ChHHHHHHHHHhhcccCC
Q 021611 256 -YASLYAGLFYESQKKADAAKLHILAACES--PYGQR--SDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 256 -~a~~~lG~~~~~~G~~d~A~~~~~kAl~~--~~~~~--s~~~~~~la~~~~~~~~~ 307 (310)
..+..++.++..+|++++|...++++++. ..+.. -...+..+|.++.+.|+.
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 11345778888899999999999998874 11211 112344667888777764
No 189
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.14 E-value=7.5e-05 Score=46.56 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=16.3
Q ss_pred HHHhhccchhhhhhhhhhhhhhhhhhccCC
Q 021611 160 YLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189 (310)
Q Consensus 160 a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P 189 (310)
+|+.+|.++..+|++++|++.|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555555
No 190
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.12 E-value=0.0012 Score=54.13 Aligned_cols=166 Identities=17% Similarity=0.125 Sum_probs=94.9
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhcc-chhhhhhhhhhhhhhhhhhccCCC-CCccce
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGL-SLYYLDRFEEGAEQFRIDVAQNPN-DTEESI 196 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~-a~~~lg~~~eA~~~f~~Al~l~P~-d~~~~~ 196 (310)
..+.....+...|......+++.+++..+.+++..++.........+. ++...|++++|+..|.+++..+|. ......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (291)
T COG0457 90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEA 169 (291)
T ss_pred hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHH
Confidence 456677788888888888888888888888888877776555555555 788888888888888888776663 111111
Q ss_pred eeeeh--hhhhcChHHHHHhHHHhcCCC----hhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhc
Q 021611 197 WCFLC--EAQLYGVDEARNRFLEVGRDP----RPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQ 268 (310)
Q Consensus 197 ~~~l~--~a~l~~~~eA~~~l~~~~~d~----~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~ 268 (310)
..... ....++.+++...+.+..... ..........+...+..+++...+... ..+.........+..+...
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (291)
T COG0457 170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249 (291)
T ss_pred HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHc
Confidence 11111 123456677766665532211 111111212222233445554444311 1121223334455555566
Q ss_pred cchhhHHHHHHHhhcC
Q 021611 269 KKADAAKLHILAACES 284 (310)
Q Consensus 269 G~~d~A~~~~~kAl~~ 284 (310)
|+.++|...+.++++.
T Consensus 250 ~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 250 GRYEEALEALEKALEL 265 (291)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6778888888777773
No 191
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.12 E-value=0.00023 Score=69.68 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=75.9
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
..+|..+.++++. .+|.++..+...+..++..|+++.|+....+|+++.|+....|+.++.+|..+|+|++|+..++.
T Consensus 216 E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 216 EVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 3466777777887 89999999999999999999999999999999999999999999999999999999999998886
Q ss_pred hhccCCC
Q 021611 184 DVAQNPN 190 (310)
Q Consensus 184 Al~l~P~ 190 (310)
+-..-++
T Consensus 294 ~Pm~~~~ 300 (395)
T PF09295_consen 294 CPMLTYK 300 (395)
T ss_pred CcCCCCc
Confidence 6544333
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.11 E-value=0.00023 Score=62.73 Aligned_cols=116 Identities=10% Similarity=0.128 Sum_probs=95.4
Q ss_pred chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch--hhHHHhhccchhhhhhhhhh
Q 021611 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ--KAYLWQRGLSLYYLDRFEEG 177 (310)
Q Consensus 100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~--~~a~~~~G~a~~~lg~~~eA 177 (310)
+.|-..++...|.++++| +--.++.....++.+.+..+++.+|...+++..+-+|.+ +..+.-.|.++..+|++++|
T Consensus 101 elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A 179 (251)
T COG4700 101 ELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADA 179 (251)
T ss_pred HhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence 334456788889888775 566788999999999999999999999999999999976 77788899999999999999
Q ss_pred hhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611 178 AEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 178 ~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~ 217 (310)
...|+.++.--|+ +++..++.--++.+|+..|+.+.+..
T Consensus 180 esafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 180 ESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 9999999999886 44445444445577877777776554
No 193
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00095 Score=63.56 Aligned_cols=116 Identities=13% Similarity=0.089 Sum_probs=92.0
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhcccc-CcchhhHHH---hhccchhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-DPRQKAYLW---QRGLSLYYLDRFEE 176 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l-~P~~~~a~~---~~G~a~~~lg~~~e 176 (310)
++-.++|...|++++. --|.+-.++..--.+++..|+.+.-...++|.|-. +|+.|-+-| ..+..+...|-|++
T Consensus 116 ~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4467789999999998 89999999999999999999999999999999988 877644333 46677888999999
Q ss_pred hhhhhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcC
Q 021611 177 GAEQFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGR 220 (310)
Q Consensus 177 A~~~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~ 220 (310)
|.+.-++++++||.|.- +....+.. ..++++|+.+-+.+-..
T Consensus 194 AEk~A~ralqiN~~D~W--a~Ha~aHVlem~~r~Keg~eFM~~ted 237 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCW--ASHAKAHVLEMNGRHKEGKEFMYKTED 237 (491)
T ss_pred HHHHHHhhccCCCcchH--HHHHHHHHHHhcchhhhHHHHHHhccc
Confidence 99999999999998853 22222322 45678888777766444
No 194
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.08 E-value=0.00024 Score=66.84 Aligned_cols=97 Identities=10% Similarity=-0.000 Sum_probs=61.7
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhh--hhhhhhhhhhhhhccCCCCCccceeee
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD--RFEEGAEQFRIDVAQNPNDTEESIWCF 199 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg--~~~eA~~~f~~Al~l~P~d~~~~~~~~ 199 (310)
.+.+...-+-.+++..+|++.|...+.+.-+++.+..-....-+.+.+..| .+.+|.-.|+.....-|..+.......
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 345666666778888888888888888888888775555544555555555 488888888887666554443222222
Q ss_pred ehhhhhcChHHHHHhHHHh
Q 021611 200 LCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 200 l~~a~l~~~~eA~~~l~~~ 218 (310)
.+..++|+++||...+.++
T Consensus 209 ~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 3344678888888877764
No 195
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.96 E-value=0.0014 Score=68.67 Aligned_cols=201 Identities=12% Similarity=0.092 Sum_probs=130.5
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
+..|....++.+. ..|+..-+-.-.|..++++|+.++|....+..-.+.|++...+--+-.+|..+|++++|+..|++
T Consensus 25 fkkal~~~~kllk--k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 25 FKKALAKLGKLLK--KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4457777777887 89999999999999999999999999888888888888888888889999999999999999999
Q ss_pred hhccCCCCCccceeeeehhhhhcChHHHHHhHH---HhcCCChhhHHHHHH-hhcCCCChHHH-------------HHHh
Q 021611 184 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL---EVGRDPRPVMREAYN-MFKGGGDPEKL-------------VAAF 246 (310)
Q Consensus 184 Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~---~~~~d~~~~~~~a~~-l~~~~~~~e~a-------------l~~~ 246 (310)
++..+|+ -+-.+..+++..+.+.+.+-.+... +.-+..+-.++.+.. .+......+.+ ...+
T Consensus 103 ~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l 181 (932)
T KOG2053|consen 103 ANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLL 181 (932)
T ss_pred HHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHh
Confidence 9999998 4444555566667777655444322 222222212222211 22222222211 1111
Q ss_pred cCCCCcc-hhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHH-HHHhhcccCCcC
Q 021611 247 SSGRENE-YFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAAL-AKVHSLCRNWSS 309 (310)
Q Consensus 247 ~~~~~~d-~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~l-a~~~~~~~~~~~ 309 (310)
......+ ..+.++++ .++..+|.+++|...+..-+...... ...++-+. ..+...+++|..
T Consensus 182 ~~~gk~~s~aE~~Lyl-~iL~~~~k~~eal~~l~~~la~~l~~-~~~~l~~~~~dllk~l~~w~~ 244 (932)
T KOG2053|consen 182 EKKGKIESEAEIILYL-LILELQGKYQEALEFLAITLAEKLTS-ANLYLENKKLDLLKLLNRWQE 244 (932)
T ss_pred ccCCccchHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHhcChHH
Confidence 2111111 22333333 46778999999999996655433222 23444444 666777888853
No 196
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.96 E-value=0.00028 Score=43.91 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=30.7
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcch
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~ 157 (310)
+.+|+.+|.++..+|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3689999999999999999999999999999953
No 197
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.95 E-value=0.0029 Score=61.20 Aligned_cols=113 Identities=11% Similarity=0.010 Sum_probs=84.9
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch-hhHHHhhccchhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
.++.|+.+..+.-. -.+....++..-+.+-...||++.|-....++-++-|++ -.....+..++...|+++.|.+-.
T Consensus 99 ~~~qAEkl~~rnae--~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 99 DFQQAEKLLRRNAE--HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cHHHHHHHHHHhhh--cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44555555554443 445556677777889999999999999999999995554 566778999999999999999999
Q ss_pred hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611 182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~ 217 (310)
.++++..|.+++..-...-+..+.|++.+....+.+
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~ 212 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK 212 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999987432222233467777777776544
No 198
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00039 Score=65.89 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=70.9
Q ss_pred ccchhhhhhhhcCC-CCchh-HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGG-NNNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 104 ~~~a~~~~~~ai~~-~~~P~-~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
+-.|...|++.|.. --||+ ++..|.+|+.+.+.+|+|..|+.|+.+|++++|++..+++.-+.+++.+.++++|+...
T Consensus 97 yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ 176 (390)
T KOG0551|consen 97 YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWC 176 (390)
T ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34566777766542 23454 67899999999999999999999999999999999999999999999999988888888
Q ss_pred hhhhccCCC
Q 021611 182 RIDVAQNPN 190 (310)
Q Consensus 182 ~~Al~l~P~ 190 (310)
+..+.++-+
T Consensus 177 ee~~~~d~e 185 (390)
T KOG0551|consen 177 EEGLQIDDE 185 (390)
T ss_pred hhhhhhhHH
Confidence 877766543
No 199
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.93 E-value=0.00086 Score=62.51 Aligned_cols=160 Identities=15% Similarity=0.028 Sum_probs=93.7
Q ss_pred hhcccchhhhhhhhcCC---CCch-hHHHHHHHhhhhheeccccccchhhhhhccccC-----cch-hhHHHhhccchhh
Q 021611 101 RLFIPSVSGIWDALTGG---NNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----PRQ-KAYLWQRGLSLYY 170 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~---~~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~-----P~~-~~a~~~~G~a~~~ 170 (310)
.+.+.+|...|.++... ..+| .-+.+|...|.++.. +++++|+..|++|+++- |.. ...+..+|.++..
T Consensus 48 ~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~ 126 (282)
T PF14938_consen 48 AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE 126 (282)
T ss_dssp TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 33455555555554221 1234 344666666666655 59999999999999983 333 5678889999999
Q ss_pred h-hhhhhhhhhhhhhhccCCCCCc-cc---eeeee--hhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHH
Q 021611 171 L-DRFEEGAEQFRIDVAQNPNDTE-ES---IWCFL--CEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLV 243 (310)
Q Consensus 171 l-g~~~eA~~~f~~Al~l~P~d~~-~~---~~~~l--~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al 243 (310)
. |++++|++.|++|+++-..+.. .. ....+ ...+++++++|+..+.++.....
T Consensus 127 ~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l-------------------- 186 (282)
T PF14938_consen 127 QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL-------------------- 186 (282)
T ss_dssp TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC--------------------
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh--------------------
Confidence 9 9999999999999986322111 00 00011 11245666666666654321100
Q ss_pred HHhcCC-CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 244 AAFSSG-RENEYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 244 ~~~~~~-~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
... .........+..++++...|+...|...+++....
T Consensus 187 ---~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 187 ---ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp ---CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred ---cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 000 01111222345778999999999999999998874
No 200
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.92 E-value=0.0024 Score=68.19 Aligned_cols=162 Identities=12% Similarity=-0.002 Sum_probs=106.7
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCc-----chhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP-----RQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW 197 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P-----~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~ 197 (310)
....+..+|.++..+|++++|.+.+++++.+.. ....++..+|.++...|++++|...++++..+.+.......+
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 345567889999999999999999999988632 235566779999999999999999999998764322110011
Q ss_pred ee-------ehhhhhcChHHHHHhHHHhcCC--Chhh-----HHHHHHhhcCCCChHHHHHHhcC--------CCCcchh
Q 021611 198 CF-------LCEAQLYGVDEARNRFLEVGRD--PRPV-----MREAYNMFKGGGDPEKLVAAFSS--------GRENEYF 255 (310)
Q Consensus 198 ~~-------l~~a~l~~~~eA~~~l~~~~~d--~~~~-----~~~a~~l~~~~~~~e~al~~~~~--------~~~~d~~ 255 (310)
.. ......|+.++|...+...... ..+. .......+...|+.+++...+.. ....+..
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 00 1112356777777776553321 1110 01111233445667666554431 1222345
Q ss_pred HhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 256 YASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 256 ~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
.++..+|.++..+|+.++|..++.+|++.
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57778999999999999999999999985
No 201
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00052 Score=62.79 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=104.3
Q ss_pred hheehhhhhhhhhhhc--CCCC---------------------------CCCchhhhhhhhccCCCcccccccccccccC
Q 021611 36 CIFFQFTSMALTQHVL--KPTI---------------------------NPPLYSFHRSLLTSKAPLSVQTHINSLFSTP 86 (310)
Q Consensus 36 ~~~~~~~~~~~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 86 (310)
|.---|-|+++++-+- +|+. +|---.||--+|+++.|.-=+-.-=.+...-
T Consensus 94 ~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~Wqlsdde 173 (329)
T KOG0545|consen 94 TVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQLSDDE 173 (329)
T ss_pred eeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccccccCCchH
Confidence 4456688999998762 2222 5555579999999998865422100000011
Q ss_pred cccccCCCCccccchh-------cccchhhhhhhhcCC------CCch----------hHHHHHHHhhhhheeccccccc
Q 021611 87 RGHYLQNRAPTFTRRL-------FIPSVSGIWDALTGG------NNNS----------REAVVAIRRGMLLFRQGDVVGS 143 (310)
Q Consensus 87 ~~~~~~~~~~~~~~~~-------~~~~a~~~~~~ai~~------~~~P----------~~~~a~~~rG~~~~~~g~~~eA 143 (310)
+. .+++.+-.+| -+.+|...|..+|.. +-.| .....+.|...+++..|+|=++
T Consensus 174 Km----kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yev 249 (329)
T KOG0545|consen 174 KM----KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEV 249 (329)
T ss_pred hh----hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHH
Confidence 11 1233322222 334455555554321 1233 3346788999999999999999
Q ss_pred hhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611 144 VAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND 191 (310)
Q Consensus 144 l~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d 191 (310)
+++.+.++..+|++..|++.||.++...=+.+||..+|.++++++|.-
T Consensus 250 leh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 250 LEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999999999999999999999999999999999999943
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.90 E-value=0.0005 Score=66.96 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=72.9
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhhhhhhhhhhhhhhhhhc----cCCCCCcc
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYYLDRFEEGAEQFRIDVA----QNPNDTEE 194 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~lg~~~eA~~~f~~Al~----l~P~d~~~ 194 (310)
.++-++|+.|.-+|+|+.||..-..-+++.-.+ -.++-++|.++..+|+|+.|++.|++.+. +...-.++
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 578899999999999999999988888776543 45788999999999999999999998654 33333455
Q ss_pred ceeeeehhh--hhcChHHHHHhHHH
Q 021611 195 SIWCFLCEA--QLYGVDEARNRFLE 217 (310)
Q Consensus 195 ~~~~~l~~a--~l~~~~eA~~~l~~ 217 (310)
...+.++.+ .+..++.|+....+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 455556555 45668888887665
No 203
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.0048 Score=59.28 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=28.6
Q ss_pred hhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 130 rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
.|.+++.+|+|++|++.|.-+.+-+.-+.+.+.+++.+.+.+|.|.||...-.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555444444555555555555555555554433
No 204
>PRK10941 hypothetical protein; Provisional
Probab=96.80 E-value=0.00052 Score=63.96 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=65.2
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE 194 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~ 194 (310)
....++=.++.+.++++.|+...++.+.++|+++.-+..||.++.++|.+..|+.+++..++..|+|+.+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 4455677789999999999999999999999999999999999999999999999999999999999864
No 205
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.75 E-value=0.0058 Score=50.10 Aligned_cols=190 Identities=19% Similarity=0.173 Sum_probs=130.9
Q ss_pred hhhhhhcCCCCchh--HHHHHHHhhhhheeccccccchhhhhhccc--cCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 109 GIWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIE--LDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 109 ~~~~~ai~~~~~P~--~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~--l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
..+..... ..+. ........+..+...+++..++..+...+. ..+.....+...|......++++++++.+.++
T Consensus 44 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (291)
T COG0457 44 ELLEEALE--LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121 (291)
T ss_pred HHHHHHHh--cCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33344443 4443 478889999999999999999999999998 78999999999999999999999999999999
Q ss_pred hccCCCCCccceeeee-hhhhhcChHHHHHhHHHhcC-CC--hhhHHHHH---HhhcCCCChHHHHHHhcCC--CCcc-h
Q 021611 185 VAQNPNDTEESIWCFL-CEAQLYGVDEARNRFLEVGR-DP--RPVMREAY---NMFKGGGDPEKLVAAFSSG--RENE-Y 254 (310)
Q Consensus 185 l~l~P~d~~~~~~~~l-~~a~l~~~~eA~~~l~~~~~-d~--~~~~~~a~---~l~~~~~~~e~al~~~~~~--~~~d-~ 254 (310)
+..++++.....+... +....+++++|...+.+... ++ ........ ..+...+..+.++..+... ..+. .
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 201 (291)
T COG0457 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD 201 (291)
T ss_pred HcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc
Confidence 9998876443333333 45578889999998877522 21 01111111 1122345566666555421 1222 3
Q ss_pred hHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhh
Q 021611 255 FYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHS 302 (310)
Q Consensus 255 ~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~ 302 (310)
......++..+...|++++|...+.+++..... .......++....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~ 247 (291)
T COG0457 202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPD--NAEALYNLALLLL 247 (291)
T ss_pred hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--cHHHHhhHHHHHH
Confidence 455667899999999999999999999994322 2234444444433
No 206
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.00085 Score=62.01 Aligned_cols=88 Identities=17% Similarity=0.230 Sum_probs=75.1
Q ss_pred ccchhhhhhhhcCCCCchh---HHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSR---EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEG 177 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~---~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA 177 (310)
+.+|...|...+. .-|+ -+.++|-+|.+++.+|+|++|...|..+++-.|+. +++++.+|.+...+|+-++|
T Consensus 157 y~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 157 YAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred HHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 3445555655565 4454 56999999999999999999999999999999876 57899999999999999999
Q ss_pred hhhhhhhhccCCCCCc
Q 021611 178 AEQFRIDVAQNPNDTE 193 (310)
Q Consensus 178 ~~~f~~Al~l~P~d~~ 193 (310)
-..|++.++.-|+.+.
T Consensus 235 ~atl~qv~k~YP~t~a 250 (262)
T COG1729 235 CATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHCCCCHH
Confidence 9999999999997653
No 207
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.66 E-value=0.0053 Score=56.46 Aligned_cols=168 Identities=15% Similarity=0.151 Sum_probs=109.4
Q ss_pred cccchhhhhhhhcCCCCchh---HHHHHHHhhhhheeccccccchhhhhhccccCcchh---hHHHhhccchhhh-----
Q 021611 103 FIPSVSGIWDALTGGNNNSR---EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK---AYLWQRGLSLYYL----- 171 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~---~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~---~a~~~~G~a~~~l----- 171 (310)
.+.+|...|.++.. ..|. ...+.+.++-++.+.|+|++|+..+++-+++.|+++ -+++.+|++++..
T Consensus 49 n~~~A~~~fe~l~~--~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~ 126 (254)
T COG4105 49 NYEEAIKYFEALDS--RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVT 126 (254)
T ss_pred CHHHHHHHHHHHHH--cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccc
Confidence 46678888888776 6665 458999999999999999999999999999999864 5677889887765
Q ss_pred ---hhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhc-
Q 021611 172 ---DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFS- 247 (310)
Q Consensus 172 ---g~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~- 247 (310)
..-.+|+..|+..+..=||...+. -+..++ ..+...+.. ..| .+..++...+.+.+|...++
T Consensus 127 rDq~~~~~A~~~f~~~i~ryPnS~Ya~----dA~~~i---~~~~d~LA~------~Em-~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 127 RDQSAARAAFAAFKELVQRYPNSRYAP----DAKARI---VKLNDALAG------HEM-AIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCcchh----hHHHHH---HHHHHHHHH------HHH-HHHHHHHHhcChHHHHHHHHH
Confidence 345678888999999999865310 011111 111111110 001 12223444555555444332
Q ss_pred ---C-CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCC
Q 021611 248 ---S-GRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYG 287 (310)
Q Consensus 248 ---~-~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~ 287 (310)
. ...+....++..+...|..+|-.++|... .+.|+.+++
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p 235 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGANYP 235 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCC
Confidence 1 11223456777899999999999999775 556665554
No 208
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.53 E-value=0.0017 Score=37.74 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=20.5
Q ss_pred hHHHhhccchhhhhhhhhhhhhhhhhhccCCC
Q 021611 159 AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190 (310)
Q Consensus 159 ~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~ 190 (310)
.+++.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34556666666666666666666666666654
No 209
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.0011 Score=62.23 Aligned_cols=173 Identities=13% Similarity=0.088 Sum_probs=114.5
Q ss_pred hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
+..+..--. +.+|.+-..+..+|.+|....+|.+|.++|++.-++.|....+.+..+..++..+++.+|+........
T Consensus 29 aI~~l~s~~--Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 29 AIQLLGSEL--ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHH--hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 444443333 488988999999999999999999999999999999999999999999999999999999987554332
Q ss_pred cCCCCCccceeeeeh-hhhhcChHHHHHhHHHhcC-CChhh-HHHHHHhhcCCCChHHHHHHhcCCCC--cchhHhhhhh
Q 021611 187 QNPNDTEESIWCFLC-EAQLYGVDEARNRFLEVGR-DPRPV-MREAYNMFKGGGDPEKLVAAFSSGRE--NEYFYASLYA 261 (310)
Q Consensus 187 l~P~d~~~~~~~~l~-~a~l~~~~eA~~~l~~~~~-d~~~~-~~~a~~l~~~~~~~e~al~~~~~~~~--~d~~~a~~~l 261 (310)
. |+-.+.....-.+ .-..+++..++..+.+... ..... ...+..+|+ .|.+|++++.+....+ +-.....+++
T Consensus 107 ~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpllAYni 184 (459)
T KOG4340|consen 107 N-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLLAYNL 184 (459)
T ss_pred C-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeec-cccHHHHHHHHHHHHhhcCCCchhHHHH
Confidence 1 2110000000000 0022444444444444332 11111 223333444 6788998888763322 1112234579
Q ss_pred hhhhhhccchhhHHHHHHHhhc
Q 021611 262 GLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 262 G~~~~~~G~~d~A~~~~~kAl~ 283 (310)
++++.+.|+++.|+++....++
T Consensus 185 ALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 185 ALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999999999999988887
No 210
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.41 E-value=0.0008 Score=39.21 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=30.6
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcch
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~ 157 (310)
.+|+.+|.++...|++++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578999999999999999999999999999863
No 211
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.04 E-value=0.0035 Score=38.27 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=20.1
Q ss_pred HHHhhccchhhhhhhhhhhhhhhhhhccCCC
Q 021611 160 YLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190 (310)
Q Consensus 160 a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~ 190 (310)
+++++|.++..+|++++|++.|++.++.-|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666664
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.95 E-value=0.0029 Score=52.60 Aligned_cols=65 Identities=17% Similarity=0.077 Sum_probs=51.5
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
....+...++..+...|++++|+..+++++.++|.+..+|..+-.++...|+..+|++.|+++.+
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34467777788888888999999999999999998888888888888889999888888888743
No 213
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.92 E-value=0.0015 Score=39.91 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=30.7
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcch
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~ 157 (310)
++++.+|.++...|++++|++.|+++++..|+.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999973
No 214
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.89 E-value=0.005 Score=55.96 Aligned_cols=62 Identities=21% Similarity=0.335 Sum_probs=56.3
Q ss_pred hhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 132 MLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 132 ~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
......|+.+.|.+.|++++++-|.....|+..|....+.|+++.|...|++.++++|.|.-
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 45667899999999999999999999999999999999999999999999999999998854
No 215
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.005 Score=58.53 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=81.4
Q ss_pred Cchh-HHHHHHHhhhhheeccccccchhhhhhccccCcc----hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 119 NNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR----QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 119 ~~P~-~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~----~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
-+|. .+.-|-.-|+-|+..++|..|+..|.+.|+-+-. +...|.||+-+.+.+|+|-.|+.+-.+++.++|.+.-
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 4553 5677888899999999999999999999998643 3566889999999999999999999999999999988
Q ss_pred cceeeeehhhhhcChHHHHHhHH
Q 021611 194 ESIWCFLCEAQLYGVDEARNRFL 216 (310)
Q Consensus 194 ~~~~~~l~~a~l~~~~eA~~~l~ 216 (310)
+++.-..|...+.++++|.....
T Consensus 155 a~~R~Akc~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 155 AYIRGAKCLLELERFAEAVNWCE 177 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHh
Confidence 76655567778888776666433
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.0088 Score=55.49 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=88.3
Q ss_pred hhhhhhcCCCCc-hhHHHHHHHhhhhheeccccccchhhhhhc----cccCcc--hhhHHHhhccchhhhhhhhhhhhhh
Q 021611 109 GIWDALTGGNNN-SREAVVAIRRGMLLFRQGDVVGSVAEFDKA----IELDPR--QKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 109 ~~~~~ai~~~~~-P~~~~a~~~rG~~~~~~g~~~eAl~~f~kA----l~l~P~--~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
+.+++.|. .+ |.+|.....+|.+.++.||.+.|...|+++ =+++-. .--.+.+++.++.-.++|.+|...|
T Consensus 198 d~~~~vi~--~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 198 DAYHSVIK--YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred HHHHHHHH--hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHH
Confidence 44445555 44 678888889999999999999999999944 334432 2455667888888889999999999
Q ss_pred hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CChhh
Q 021611 182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPRPV 225 (310)
Q Consensus 182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~~~ 225 (310)
.++++.||.++.+.....+|...+|+...|++.+..+.+ +|.+.
T Consensus 276 ~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 276 TEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999988766677788888999999888877543 55543
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.73 E-value=0.0039 Score=62.53 Aligned_cols=111 Identities=17% Similarity=0.253 Sum_probs=85.1
Q ss_pred cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch----hhHHHhhccchhhhhhhhhhhhh
Q 021611 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ----KAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~----~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
..+..+...... .-|+.+...+..|..+...|+.++|++.|++++...... .-.+|.+|.++..+++|++|.+.
T Consensus 250 ~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 250 EEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 345555666665 889999999999999999999999999999999755443 34678999999999999999999
Q ss_pred hhhhhccCCCCCccceeee---ehhhhhcCh-------HHHHHhHHHhc
Q 021611 181 FRIDVAQNPNDTEESIWCF---LCEAQLYGV-------DEARNRFLEVG 219 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~~---l~~a~l~~~-------~eA~~~l~~~~ 219 (310)
|.+..+.+.-.. + ++.+ .|...+++. ++|...+.++.
T Consensus 328 f~~L~~~s~WSk-a-~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 328 FLRLLKESKWSK-A-FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhccccHH-H-HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999776432 2 2222 233366776 77777776653
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.0073 Score=56.03 Aligned_cols=71 Identities=21% Similarity=0.382 Sum_probs=65.7
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~ 192 (310)
++...+.+.+.++.-+++|.+|...|++.++.||.++.+.+++++++..+|+..+|++..+.++++.|...
T Consensus 250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 34567788888999999999999999999999999999999999999999999999999999999999653
No 219
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.60 E-value=0.0019 Score=41.20 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=15.0
Q ss_pred HHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 161 LWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 161 ~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
+.++|.++..+|+|++|++.|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
No 220
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.55 E-value=0.0046 Score=39.41 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=26.6
Q ss_pred HHHHhhhhheeccccccchhhhhhccccCcc
Q 021611 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (310)
Q Consensus 126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~ 156 (310)
+|.++|.++..+|++++|++.|++++.+.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999998776654
No 221
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.03 Score=53.95 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=88.5
Q ss_pred eccccccchhhhhhccccCcchh-hHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh--hhhhcChHHHH
Q 021611 136 RQGDVVGSVAEFDKAIELDPRQK-AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEAR 212 (310)
Q Consensus 136 ~~g~~~eAl~~f~kAl~l~P~~~-~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~--~a~l~~~~eA~ 212 (310)
...||.+|+..++-.+.++.... ..-...|.+++.+|+|++|+..|.-+..- +++.+..|.+++ ..-+|.+.||.
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHHH
Confidence 34688888888888877765443 44556899999999999999999988774 344444666654 44789999998
Q ss_pred HhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 213 NRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 213 ~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
....+..+.|-- .+....+--..++-++.+..-.. + .|..+-.+.++-+++-.-.+.+|++.|.+.+.
T Consensus 112 ~~~~ka~k~pL~-~RLlfhlahklndEk~~~~fh~~-L-qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 112 SIAEKAPKTPLC-IRLLFHLAHKLNDEKRILTFHSS-L-QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHhhCCCChHH-HHHHHHHHHHhCcHHHHHHHHHH-H-hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887776554321 11222211112222333322221 1 11222233455555556678888888888887
No 222
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.38 E-value=0.0092 Score=56.43 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=66.6
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeee
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCF 199 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~ 199 (310)
+..-.+.+.-..+.|+.+.|...|+.|+.++|++++++..+|.....-.+.-+|-.+|-+|+.++|.+.++..++.
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3444555666677899999999999999999999999999999999999999999999999999999988665543
No 223
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.061 Score=50.57 Aligned_cols=149 Identities=12% Similarity=0.066 Sum_probs=91.7
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhh
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ 204 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~ 204 (310)
+.-+..+.-.+..|++.+|...|..+++..|++..+...++.++...|+.++|...+... |.+.....+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~----- 205 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHG----- 205 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHH-----
Confidence 445566777788888888888888888888888888888888888888888877765542 32221101111
Q ss_pred hcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 205 LYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 205 l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
....++.+.++ ...++..+..+.+. .+|++..+.+-++..+...|+.++|..++-.-++.
T Consensus 206 ---l~a~i~ll~qa---------------a~~~~~~~l~~~~a--adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 206 ---LQAQIELLEQA---------------AATPEIQDLQRRLA--ADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred ---HHHHHHHHHHH---------------hcCCCHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 00111111211 11223333444433 35667777888999999999999999999888885
Q ss_pred CCCCCChHHHHHHHHHhh
Q 021611 285 PYGQRSDDYMAALAKVHS 302 (310)
Q Consensus 285 ~~~~~s~~~~~~la~~~~ 302 (310)
+.+-.+......|-.+..
T Consensus 266 d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 266 DRGFEDGEARKTLLELFE 283 (304)
T ss_pred cccccCcHHHHHHHHHHH
Confidence 443333444445544433
No 224
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.011 Score=54.38 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=79.7
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhcccc--------Ccch----------hhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQ----------KAYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~----------~~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
...+....|+-++.+|+|.||...|..||.. .|.. ...+.|...+++..|+|=++++.-...
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3578889999999999999999999998743 4543 235678999999999999999999999
Q ss_pred hccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 185 VAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 185 l~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
+...|.+..+++.++.+.+..=+..||.+++.++
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 9999999887777766666555678888888774
No 225
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.93 E-value=0.015 Score=45.24 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=43.3
Q ss_pred cchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611 142 GSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 142 eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~ 192 (310)
..++.++++++.+|++..+.+.++..+...|++++|++.+-..++.+|++.
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 346788899999999999999999999999999999999999999998764
No 226
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.93 E-value=0.11 Score=51.96 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=103.7
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcch-hhHHHh------hccch---hhhhhhhhhhhhhhhhhccC
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQ------RGLSL---YYLDRFEEGAEQFRIDVAQN 188 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-~~a~~~------~G~a~---~~lg~~~eA~~~f~~Al~l~ 188 (310)
-||.|+++|+..-...-..|+.+.-.+.|++||.--|-- ..-++. +-.++ ....+.+-+.+.|+.++++-
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 799999999999998889999999999999999988742 121111 11222 34588999999999999999
Q ss_pred CCCCc--cceeeeehhh--hhcChHHHHHhHHH-hcCCChhhHHHHHHhhc-CCCChHHHHHHhc--CCCCcchhHhhhh
Q 021611 189 PNDTE--ESIWCFLCEA--QLYGVDEARNRFLE-VGRDPRPVMREAYNMFK-GGGDPEKLVAAFS--SGRENEYFYASLY 260 (310)
Q Consensus 189 P~d~~--~~~~~~l~~a--~l~~~~eA~~~l~~-~~~d~~~~~~~a~~l~~-~~~~~e~al~~~~--~~~~~d~~~a~~~ 260 (310)
|.-.- +-+|...+.. +..+...|+..+.. ++.-|.+.....|.-+. ..+.++..-..+. ..-.|+.++++.-
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 97432 3344333332 45667788777655 34444443333332111 1122222222222 1224556666655
Q ss_pred hhhhhhhccchhhHHHHHHHhhc
Q 021611 261 AGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 261 lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
-|.+-..+|+.|.|+..|.-|+.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhc
Confidence 66666677777777777777777
No 227
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.83 E-value=0.12 Score=53.11 Aligned_cols=190 Identities=12% Similarity=0.067 Sum_probs=123.3
Q ss_pred hhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCc--c---hhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP--R---QKAYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 110 ~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P--~---~~~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
.|+++|. +.=--|..-.|.|+.+-.-.-+++|-..|+|-|.|.| + -+..|..+....+.--..+-|...|++|
T Consensus 499 vYdriid--LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 499 VYDRIID--LRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHH--HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4455554 3334578888999999999999999999999999985 3 2445556666666667889999999999
Q ss_pred hccCCCCCccceeeeehhh----hhcChHHHHHhHHHhcCCCh----hhHHH-----HHHhhcCCC---ChHHHHHHhcC
Q 021611 185 VAQNPNDTEESIWCFLCEA----QLYGVDEARNRFLEVGRDPR----PVMRE-----AYNMFKGGG---DPEKLVAAFSS 248 (310)
Q Consensus 185 l~l~P~d~~~~~~~~l~~a----~l~~~~eA~~~l~~~~~d~~----~~~~~-----a~~l~~~~~---~~e~al~~~~~ 248 (310)
++..|....- ..++..+ ..|-...|+..+.++..... ..|.+ +...|+-.. -++++++.+.
T Consensus 577 L~~Cpp~~aK--tiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp- 653 (835)
T KOG2047|consen 577 LDGCPPEHAK--TIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLP- 653 (835)
T ss_pred HhcCCHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCC-
Confidence 9998832211 1223333 23555666666766543221 11212 222233221 2455555532
Q ss_pred CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 249 GRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 249 ~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
+.+.....+--+..-...|++|.|+..|.-+-++-.+....++|-+-.....++||
T Consensus 654 --~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 654 --DSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred --hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 11222222224456677899999999999999976677777888888888888887
No 228
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.44 E-value=0.016 Score=40.66 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=26.6
Q ss_pred HHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 160 YLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 160 a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
.+|.+++.++++|+|++|....+.+++++|++..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 5677888888888888888888888888888765
No 229
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.35 E-value=0.019 Score=57.76 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=74.2
Q ss_pred cchhhhhhhhcCCCCchhHHHHHHHhhhhhee---ccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFR---QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~---~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
.++...|.+++. .-|.....+-+|+.++++ .|+.=.|+.|...|+++||-...+|+.++.++..++++.+|+++.
T Consensus 391 ~~~i~~~s~a~q--~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 391 SGAISHYSRAIQ--YVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHhh--hccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 346666777777 788888889999888876 467778999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCC
Q 021611 182 RIDVAQNPNDT 192 (310)
Q Consensus 182 ~~Al~l~P~d~ 192 (310)
..+....|.|.
T Consensus 469 ~alq~~~Ptd~ 479 (758)
T KOG1310|consen 469 WALQMSFPTDV 479 (758)
T ss_pred HHHhhcCchhh
Confidence 88888888554
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.27 E-value=0.043 Score=45.45 Aligned_cols=89 Identities=19% Similarity=0.122 Sum_probs=56.8
Q ss_pred HhhhhheeccccccchhhhhhccccC----------------------cchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 129 RRGMLLFRQGDVVGSVAEFDKAIELD----------------------PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 129 ~rG~~~~~~g~~~eAl~~f~kAl~l~----------------------P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
..|......|+.+++++.+.+++.+- .....+...++..+...|++++|+...++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 33444444555555555555555553 22233444677778889999999999999999
Q ss_pred cCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611 187 QNPNDTEESIWCFLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 187 l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~ 217 (310)
++|-+-..+...-.+....|+..+|...+.+
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 9998765433333455588999999887765
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.018 Score=54.05 Aligned_cols=142 Identities=12% Similarity=0.017 Sum_probs=88.0
Q ss_pred hhhhhhccCCCcccccccccccccCcccccCCCCccccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccc
Q 021611 62 FHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVV 141 (310)
Q Consensus 62 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~ 141 (310)
=|+-+|+...|.+....+-.....+... .+.++..+++.++. ..|++.++...++.+++..|+.+
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e-------------~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e 185 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAE-------------DFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVE 185 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhcc-------------chhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChH
Confidence 4566666666664433332222222222 45668899999998 89999999999999999999999
Q ss_pred cchhhhhhccccCcch-hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc
Q 021611 142 GSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG 219 (310)
Q Consensus 142 eAl~~f~kAl~l~P~~-~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~ 219 (310)
+|.+.++..=.-..+. ......+-..+.+.....+ ..++++.+..||+|.+..+-........|+.++|.+.+..+.
T Consensus 186 ~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 186 AAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9988887632222221 1111111122333333333 246677888999998743322222336789999999877643
No 232
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.99 E-value=0.017 Score=40.52 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=33.8
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhc
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRG 165 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G 165 (310)
+.+|.++..+.++|+|++|....+++++++|++.++..-+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 35788999999999999999999999999999988865443
No 233
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.91 E-value=0.12 Score=53.13 Aligned_cols=158 Identities=15% Similarity=0.074 Sum_probs=102.7
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcc--hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR--QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL 200 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~--~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l 200 (310)
-|.+|...+..++.+|+...--..|++|+.-=|- +...|-.--.-....|-.+-++..|++.++++|...+.++ -+
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyi-e~- 178 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYI-EY- 178 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHH-HH-
Confidence 4678889999999999999999999999998883 1222211111223345568999999999999998866432 11
Q ss_pred hhhhhcChHHHHHhHHHhcCCChh----------hHHHHHHhhcCC------CChHHHHHHhcCCCCcc-hhHhhhhhhh
Q 021611 201 CEAQLYGVDEARNRFLEVGRDPRP----------VMREAYNMFKGG------GDPEKLVAAFSSGRENE-YFYASLYAGL 263 (310)
Q Consensus 201 ~~a~l~~~~eA~~~l~~~~~d~~~----------~~~~a~~l~~~~------~~~e~al~~~~~~~~~d-~~~a~~~lG~ 263 (310)
+...++.+||...+..+-++... .+.+...+.... .++++.++.-. ..-+| ....+..|+.
T Consensus 179 -L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi-~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 -LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI-RRFTDQLGFLWCSLAD 256 (835)
T ss_pred -HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc-ccCcHHHHHHHHHHHH
Confidence 33567889998888775443221 122222222211 12344333321 11122 3445667999
Q ss_pred hhhhccchhhHHHHHHHhhcC
Q 021611 264 FYESQKKADAAKLHILAACES 284 (310)
Q Consensus 264 ~~~~~G~~d~A~~~~~kAl~~ 284 (310)
+|-..|++|.|++.|.+++..
T Consensus 257 YYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh
Confidence 999999999999999999984
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.90 E-value=0.18 Score=48.88 Aligned_cols=158 Identities=14% Similarity=0.058 Sum_probs=98.1
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcch-----hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc----
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-----KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE---- 194 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-----~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~---- 194 (310)
.+++.+++..+-+.-++..++..-...+.+-... ..++..+|.++.-++-|+.+++.|++|+++.-+..++
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 4778888888877777777777666666664322 3677789999999999999999999999875443322
Q ss_pred ceeeeehhh--hhcChHHHHHhHHH-------hc-CCChhhH--------HHHHHhhcCCCChHHHHHHhc--------C
Q 021611 195 SIWCFLCEA--QLYGVDEARNRFLE-------VG-RDPRPVM--------REAYNMFKGGGDPEKLVAAFS--------S 248 (310)
Q Consensus 195 ~~~~~l~~a--~l~~~~eA~~~l~~-------~~-~d~~~~~--------~~a~~l~~~~~~~e~al~~~~--------~ 248 (310)
.....++.. ++.++++|.-..-+ +. .|....+ ..++.+.+..|+ |+++++ .
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lgd---A~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGD---AMECCEEAMKLALQH 239 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHh
Confidence 222333332 67777777664333 22 1222111 112223333333 333332 1
Q ss_pred CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 249 GRENEYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 249 ~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
+..+-...-..-+|-+|...|+.|.|+.-|++|...
T Consensus 240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 222222333344888999999999999999999874
No 235
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.67 E-value=0.082 Score=55.93 Aligned_cols=145 Identities=14% Similarity=0.121 Sum_probs=98.0
Q ss_pred eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhH
Q 021611 136 RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 215 (310)
Q Consensus 136 ~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l 215 (310)
..+++..|++..++.++-.|+-..+..-.|+++.++|++++|..+++..-..-++|....-....+...+++.++|...+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44788899999999999999999999999999999999999999888877777877653332334556789999999999
Q ss_pred HHhcC-CChhhHHHHHHhhcCC---CCh----HHHHHHhcCCCCcchhHhhhhhhhhhhhccchhh---------HHHHH
Q 021611 216 LEVGR-DPRPVMREAYNMFKGG---GDP----EKLVAAFSSGRENEYFYASLYAGLFYESQKKADA---------AKLHI 278 (310)
Q Consensus 216 ~~~~~-d~~~~~~~a~~l~~~~---~~~----e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~---------A~~~~ 278 (310)
.++.+ .|.. ...+.+|..- +.+ ..+++.+... +....+.|.....++..+...++ |.+..
T Consensus 101 e~~~~~~P~e--ell~~lFmayvR~~~yk~qQkaa~~LyK~~-pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 101 ERANQKYPSE--ELLYHLFMAYVREKSYKKQQKAALQLYKNF-PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHhhCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 88654 4542 2333333321 111 1244444422 22344445556666666655444 44466
Q ss_pred HHhhc
Q 021611 279 LAACE 283 (310)
Q Consensus 279 ~kAl~ 283 (310)
.+.++
T Consensus 178 ~~~l~ 182 (932)
T KOG2053|consen 178 QKLLE 182 (932)
T ss_pred HHHhc
Confidence 66666
No 236
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.54 E-value=0.052 Score=46.69 Aligned_cols=85 Identities=16% Similarity=0.042 Sum_probs=75.0
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 203 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a 203 (310)
...++....+-...++.+++...++-.--+.|..+..-..-|.++...|+|.+|+..|+...+..|..+.+.+...+|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 46777888888888999999999999999999999999999999999999999999999999999988876666777777
Q ss_pred hhcCh
Q 021611 204 QLYGV 208 (310)
Q Consensus 204 ~l~~~ 208 (310)
.+++.
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 66653
No 237
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.51 E-value=0.056 Score=53.98 Aligned_cols=134 Identities=14% Similarity=0.128 Sum_probs=79.2
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhh-ccccCcch--------hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDK-AIELDPRQ--------KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~k-Al~l~P~~--------~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~ 192 (310)
+.+.+.+-....+...|+|..|...+.. -|.-.|.+ -..|+|+|.+++++|.|.-+...|.+|++ | .
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~-N---~ 313 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR-N---S 313 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH-H---H
Confidence 4556666666666666666666665544 23333331 22345677777777777777777777665 0 0
Q ss_pred ccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchh
Q 021611 193 EESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKAD 272 (310)
Q Consensus 193 ~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d 272 (310)
-..... | -.+++. +. ..........|+.|..|...|+.-
T Consensus 314 c~qL~~-------g-------------~~~~~~-------~t--------------ls~nks~eilYNcG~~~Lh~grPl 352 (696)
T KOG2471|consen 314 CSQLRN-------G-------------LKPAKT-------FT--------------LSQNKSMEILYNCGLLYLHSGRPL 352 (696)
T ss_pred HHHHhc-------c-------------CCCCcc-------ee--------------hhcccchhhHHhhhHHHHhcCCcH
Confidence 000000 0 000100 00 011224556678999999999999
Q ss_pred hHHHHHHHhhcCCCCCCChHHHHHHHHHhh
Q 021611 273 AAKLHILAACESPYGQRSDDYMAALAKVHS 302 (310)
Q Consensus 273 ~A~~~~~kAl~~~~~~~s~~~~~~la~~~~ 302 (310)
.|+++|.+|+. .++ +++..|-.||..+.
T Consensus 353 ~AfqCf~~av~-vfh-~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 353 LAFQCFQKAVH-VFH-RNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHH-HHh-cCcHHHHHHHHHHH
Confidence 99999999998 443 56788888877654
No 238
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.26 E-value=0.33 Score=48.57 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=46.0
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE 202 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~ 202 (310)
+...|+..|..-..++++..|-..|++||..+..+...|...+..-.+.....-|...+++|+.+-|.-.. +|+-...
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq--lWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ--LWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH--HHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555553222 3333222
Q ss_pred h--hhcChHHHHHhHHH
Q 021611 203 A--QLYGVDEARNRFLE 217 (310)
Q Consensus 203 a--~l~~~~eA~~~l~~ 217 (310)
. .+|+...|+..+.+
T Consensus 150 mEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHhcccHHHHHHHHH
Confidence 2 34555555444433
No 239
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.26 E-value=0.051 Score=42.22 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=47.4
Q ss_pred hhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch--hhHHHhhccchhhhhhhhhhhhhhh
Q 021611 111 WDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ--KAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 111 ~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~--~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
..+.+. .+|+|..+.+.++..++..|++++|++.+-++++.+|++ ..+.-.+=.++..+|.-+.-+..|+
T Consensus 11 l~~~~a--~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 11 LEAALA--ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 445566 899999999999999999999999999999999999986 3333333334444444443333333
No 240
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.26 E-value=0.025 Score=52.54 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=62.3
Q ss_pred HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE 194 (310)
Q Consensus 126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~ 194 (310)
..-++=.++.+.++.+.|...-++.+.++|+++.-+..+|.+|.++|-+.-|++++...++.-|+++.+
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 334445578888999999999999999999999999999999999999999999999999999998763
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.93 E-value=0.18 Score=49.20 Aligned_cols=148 Identities=11% Similarity=-0.006 Sum_probs=88.1
Q ss_pred chhHHHHHHHhhhhhee---ccccccchhhhhh-ccccCcchhhHHHhhccchhhh---------hhhhhhhhhhhhhhc
Q 021611 120 NSREAVVAIRRGMLLFR---QGDVVGSVAEFDK-AIELDPRQKAYLWQRGLSLYYL---------DRFEEGAEQFRIDVA 186 (310)
Q Consensus 120 ~P~~~~a~~~rG~~~~~---~g~~~eAl~~f~k-Al~l~P~~~~a~~~~G~a~~~l---------g~~~eA~~~f~~Al~ 186 (310)
-++.+.+-+..|.++.+ .|+.++|+..+.. .....+.+++.+--.|.+|-.+ ..+++|++.|+++.+
T Consensus 175 ~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 175 VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 34566788899999999 9999999999999 5555667788887788776543 458899999999999
Q ss_pred cCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhh
Q 021611 187 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYE 266 (310)
Q Consensus 187 l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~ 266 (310)
++|+.-.+ ++....+...|...+....+.++.. .+-.+....| ...+....+....+..+..
T Consensus 255 ~~~~~Y~G-IN~AtLL~~~g~~~~~~~el~~i~~-------~l~~llg~kg----------~~~~~~dYWd~ATl~Ea~v 316 (374)
T PF13281_consen 255 IEPDYYSG-INAATLLMLAGHDFETSEELRKIGV-------KLSSLLGRKG----------SLEKMQDYWDVATLLEASV 316 (374)
T ss_pred CCccccch-HHHHHHHHHcCCcccchHHHHHHHH-------HHHHHHHhhc----------cccccccHHHHHHHHHHHH
Confidence 99754321 1111111122322222222222110 0001111111 0111122222333445556
Q ss_pred hccchhhHHHHHHHhhcCC
Q 021611 267 SQKKADAAKLHILAACESP 285 (310)
Q Consensus 267 ~~G~~d~A~~~~~kAl~~~ 285 (310)
-.|++++|.+++.++.+..
T Consensus 317 L~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 317 LAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HcCCHHHHHHHHHHHhhcC
Confidence 6899999999999999854
No 242
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=92.89 E-value=0.27 Score=54.48 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=39.7
Q ss_pred ccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc-cCCCC
Q 021611 137 QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA-QNPND 191 (310)
Q Consensus 137 ~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~-l~P~d 191 (310)
.++-.+..+||++-+.-+|+..-.|.+.=--+..+++.++|.+.+++||. +|+..
T Consensus 1437 l~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE 1492 (1710)
T KOG1070|consen 1437 LSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE 1492 (1710)
T ss_pred cccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch
Confidence 34455677788888888888777777655566777888888888888876 55544
No 243
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.32 E-value=0.085 Score=43.43 Aligned_cols=97 Identities=18% Similarity=0.060 Sum_probs=56.6
Q ss_pred hhhhhhhhhhhhhhhhhhccCCCCCc------------cceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcC
Q 021611 168 LYYLDRFEEGAEQFRIDVAQNPNDTE------------ESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKG 235 (310)
Q Consensus 168 ~~~lg~~~eA~~~f~~Al~l~P~d~~------------~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~ 235 (310)
.+.-|-|++|...+++|+++...-|. ++++..-+...+|+++|++....+ +..+|+.
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~-----------aL~YFNR 87 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADR-----------ALRYFNR 87 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH-----------HHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHH-----------HHHHHhh
Confidence 34457899999999999876433221 111111122367888888776553 3445654
Q ss_pred CCChHHHHHHhcCCCCcchhH-hhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 236 GGDPEKLVAAFSSGRENEYFY-ASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 236 ~~~~e~al~~~~~~~~~d~~~-a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
.|...+- .+..+. +-+..+..+...|+.++|+..|+.+.+
T Consensus 88 RGEL~qd--------eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 88 RGELHQD--------EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp H--TTST--------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccccc--------cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4432110 111222 445688999999999999999999987
No 244
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.32 E-value=0.062 Score=49.00 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=52.4
Q ss_pred cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch
Q 021611 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~ 157 (310)
.+.+..+.+.++|+++++ +-|....-|+.+|...-..|+++.|...|+++++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344567789999999999 999999999999999999999999999999999999976
No 245
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.10 E-value=0.093 Score=43.22 Aligned_cols=66 Identities=23% Similarity=0.231 Sum_probs=51.2
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccc-------cCcch----hhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIE-------LDPRQ----KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~-------l~P~~----~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l 187 (310)
-++..|-.++-++..+|+|++++..-++++. |+.+. ..+.+++|.++..+|+.+||+..|+.+.+.
T Consensus 53 FDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 53 FDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 3567778888899999999999887777764 44443 245668999999999999999999998764
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.50 E-value=0.44 Score=43.98 Aligned_cols=169 Identities=14% Similarity=0.016 Sum_probs=98.7
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcc-----h-hhHHHhhccchhhhhhhhhhhhhhhhhhccCCC--CCccc
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR-----Q-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN--DTEES 195 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~-----~-~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~--d~~~~ 195 (310)
+..|..-+.++...++|+.|-..+.+|++-.-+ + ..++-+-|...-.+..+.|++..|++|..+--. .+++
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt- 109 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT- 109 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch-
Confidence 356667777888889999999999999854332 2 455667778888889999999999999875222 2221
Q ss_pred eeeeehhh----hhcChHHHHHhHHHh----cCCChh-----hHHHHHHhhcCCCChHHH-HHHhcCC-------CCcch
Q 021611 196 IWCFLCEA----QLYGVDEARNRFLEV----GRDPRP-----VMREAYNMFKGGGDPEKL-VAAFSSG-------RENEY 254 (310)
Q Consensus 196 ~~~~l~~a----~l~~~~eA~~~l~~~----~~d~~~-----~~~~a~~l~~~~~~~e~a-l~~~~~~-------~~~d~ 254 (310)
+-..+..+ ...++++|+..+++. ..+.+. ..+.+...+-...+++++ ....... .-++.
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 11111111 234577777776652 222222 222222333333344443 2222211 11223
Q ss_pred hHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHH
Q 021611 255 FYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDY 293 (310)
Q Consensus 255 ~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~ 293 (310)
..+...+-++|....++..|...|+....++..+.|.+-
T Consensus 190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~ 228 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS 228 (308)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH
Confidence 333333345666677999999999998887666666554
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.27 E-value=0.36 Score=48.49 Aligned_cols=103 Identities=17% Similarity=0.050 Sum_probs=61.6
Q ss_pred hcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcc-------------------------hhhHHHhhccch
Q 021611 114 LTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR-------------------------QKAYLWQRGLSL 168 (310)
Q Consensus 114 ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~-------------------------~~~a~~~~G~a~ 168 (310)
++. ++|+.+.+|+-++.-.. .-..||++.|.++++.... ..-+...+|.+.
T Consensus 194 ALe--i~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCa 269 (539)
T PF04184_consen 194 ALE--INPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCA 269 (539)
T ss_pred HHH--hhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHH
Confidence 455 88888888887765321 1233455555554443210 012233567778
Q ss_pred hhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcC
Q 021611 169 YYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGR 220 (310)
Q Consensus 169 ~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~ 220 (310)
.++|+.+||++.|+..++.+|.+..-.+...+... .++.+.++.+.+.+-+.
T Consensus 270 rklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 270 RKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 88889999999998888888764332233333333 56778888777776543
No 248
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.17 E-value=0.16 Score=51.91 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=66.5
Q ss_pred hhhhhhhhcCCCCchh-HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611 107 VSGIWDALTGGNNNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV 185 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~-~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al 185 (310)
|..+...++. ..|. ......+++.+.+..|-..+|-..+.+++.++...+-.++..|.+++.+.+.+.|++.|+.|+
T Consensus 626 a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~ 703 (886)
T KOG4507|consen 626 AIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQAL 703 (886)
T ss_pred HHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHH
Confidence 3344444443 4553 335667888888888888889889999988887777888889999999999999999999999
Q ss_pred ccCCCCCc
Q 021611 186 AQNPNDTE 193 (310)
Q Consensus 186 ~l~P~d~~ 193 (310)
+++|++++
T Consensus 704 ~~~~~~~~ 711 (886)
T KOG4507|consen 704 KLTTKCPE 711 (886)
T ss_pred hcCCCChh
Confidence 99998875
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.16 E-value=0.18 Score=50.57 Aligned_cols=120 Identities=12% Similarity=0.122 Sum_probs=79.4
Q ss_pred eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccc---ee-eeehhhhhcChHHH
Q 021611 136 RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEES---IW-CFLCEAQLYGVDEA 211 (310)
Q Consensus 136 ~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~---~~-~~l~~a~l~~~~eA 211 (310)
.....+.|.+..++..+..|+..-..+..|.++...|+.++|++.|++++....+-+... .| ...+...+.++++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 345667889999999999999999999999999999999999999999995443322110 00 11222345666666
Q ss_pred HHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccch-------hhHHHHHHHhhc
Q 021611 212 RNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKA-------DAAKLHILAACE 283 (310)
Q Consensus 212 ~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~-------d~A~~~~~kAl~ 283 (310)
...+.++....+ + ....-.|..|.++...|+. ++|...|+++-.
T Consensus 325 ~~~f~~L~~~s~--W--------------------------Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKESK--W--------------------------SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhccc--c--------------------------HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 666554322110 0 0111133466777777777 788888887766
No 250
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.16 E-value=0.1 Score=33.13 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=22.8
Q ss_pred hHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611 159 AYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 159 ~a~~~~G~a~~~lg~~~eA~~~f~~Al~l 187 (310)
.++.++|.++...|++++|+..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45678888888888888888888888775
No 251
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.09 E-value=0.061 Score=34.23 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=26.9
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccC
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~ 154 (310)
+.++.++|.+|..+|++++|+..+++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999998764
No 252
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.60 E-value=1.9 Score=38.03 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=40.6
Q ss_pred hhcCCCChHHHHHHhcC---CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 232 MFKGGGDPEKLVAAFSS---GRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 232 l~~~~~~~e~al~~~~~---~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
++...|.++++.+..+. ..++=...+.-.||+.-.+.|++..|.+.|.+...
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 56668889988777652 22333555666799999999999999999999887
No 253
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.54 E-value=0.18 Score=46.84 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=23.8
Q ss_pred cccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 140 VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 140 ~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
+.+|.=.|+.--+--|--+.....++.++..+|||+||...++.++.-+++|++
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 334444444433322222334444444444444444444444444444444444
No 254
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=89.88 E-value=0.12 Score=48.23 Aligned_cols=107 Identities=11% Similarity=0.199 Sum_probs=71.3
Q ss_pred cchhhhhhhhcCCCCchhHHHHHHHhhhhhee-ccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFR-QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~-~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
..+-..|.++.. ..+-....|...+..... .++.+.|...|+++++..|.+...|..-..-+..+|+.+.|...|++
T Consensus 18 ~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer 95 (280)
T PF05843_consen 18 EAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFER 95 (280)
T ss_dssp HHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 345566666664 445567888888888666 56666689999999888888888888777778888888899999999
Q ss_pred hhccCCCCC-ccceeeeehhh--hhcChHHHHH
Q 021611 184 DVAQNPNDT-EESIWCFLCEA--QLYGVDEARN 213 (310)
Q Consensus 184 Al~l~P~d~-~~~~~~~l~~a--~l~~~~eA~~ 213 (310)
++..-|.+. ...+|...... +.|+.+....
T Consensus 96 ~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 96 AISSLPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp HCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888877655 33455443333 4455544443
No 255
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.47 E-value=1.3 Score=43.62 Aligned_cols=178 Identities=14% Similarity=0.096 Sum_probs=107.7
Q ss_pred hhcccchhhhhhhhcCC-CCchh-----HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGG-NNNSR-----EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF 174 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~-~~~P~-----~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~ 174 (310)
.+.+.++..+.|+..+. -+.|+ .+..+-.+++.+.. -+...|.++-.++.+|.|++..+-..-+.++++.|+.
T Consensus 201 ~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~ 279 (531)
T COG3898 201 AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNL 279 (531)
T ss_pred cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccch
Confidence 34566666666653221 12222 23444445555444 5688999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH------hcCCChhh-HHHHHHhhcCCCChHHHHHHhc
Q 021611 175 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE------VGRDPRPV-MREAYNMFKGGGDPEKLVAAFS 247 (310)
Q Consensus 175 ~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~------~~~d~~~~-~~~a~~l~~~~~~~e~al~~~~ 247 (310)
-++-..++.+.+.+|+ |. +|.....++.|+. +++++++ +.++..+. +..+-..+. .+++-.+....+
T Consensus 280 rKg~~ilE~aWK~ePH-P~--ia~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAld-a~e~~~ARa~Ae 353 (531)
T COG3898 280 RKGSKILETAWKAEPH-PD--IALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALD-AGEFSAARAKAE 353 (531)
T ss_pred hhhhhHHHHHHhcCCC-hH--HHHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHh-ccchHHHHHHHH
Confidence 9999999999999985 43 4554445555553 2233222 33332221 111111222 233333322222
Q ss_pred CCCC-cchhHhhhhhhhhhhhc-cchhhHHHHHHHhhcCC
Q 021611 248 SGRE-NEYFYASLYAGLFYESQ-KKADAAKLHILAACESP 285 (310)
Q Consensus 248 ~~~~-~d~~~a~~~lG~~~~~~-G~~d~A~~~~~kAl~~~ 285 (310)
.... .+...++..++.+-+.. |+.++.++.+.++++-+
T Consensus 354 aa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 354 AAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 1111 11222344566666555 99999999999999954
No 256
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=89.47 E-value=1.2 Score=49.65 Aligned_cols=50 Identities=10% Similarity=0.201 Sum_probs=41.5
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccc-cCc
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE-LDP 155 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~-l~P 155 (310)
.|+..+-+.+.+. .+||++..|+..=.-.+.+++.++|.+.+++||. +++
T Consensus 1440 ~pesaeDferlvr--ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~ 1490 (1710)
T KOG1070|consen 1440 APESAEDFERLVR--SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINF 1490 (1710)
T ss_pred CCcCHHHHHHHHh--cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc
Confidence 3445566677776 8999999999999999999999999999999986 444
No 257
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.08 E-value=0.077 Score=53.04 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=67.3
Q ss_pred CCchh--HHHHHHHhhhhheeccccccchhhhhhccc---------cCc---------chhhHHHhhccchhhhhhhhhh
Q 021611 118 NNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIE---------LDP---------RQKAYLWQRGLSLYYLDRFEEG 177 (310)
Q Consensus 118 ~~~P~--~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~---------l~P---------~~~~a~~~~G~a~~~lg~~~eA 177 (310)
.+.|. .-..|.++|-+.++.|.|.-++..|.+|++ +.| ..-...||.|+.+...||.-+|
T Consensus 275 ~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~A 354 (696)
T KOG2471|consen 275 TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLA 354 (696)
T ss_pred cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHH
Confidence 44554 336789999999999999999999999996 222 2345789999999999999999
Q ss_pred hhhhhhhhccCCCCCccceeeeehhh
Q 021611 178 AEQFRIDVAQNPNDTEESIWCFLCEA 203 (310)
Q Consensus 178 ~~~f~~Al~l~P~d~~~~~~~~l~~a 203 (310)
.++|.+++..--.+|. +|..++..
T Consensus 355 fqCf~~av~vfh~nPr--lWLRlAEc 378 (696)
T KOG2471|consen 355 FQCFQKAVHVFHRNPR--LWLRLAEC 378 (696)
T ss_pred HHHHHHHHHHHhcCcH--HHHHHHHH
Confidence 9999999987655554 78776554
No 258
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=89.07 E-value=0.15 Score=47.67 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=72.9
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhh-hhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL-DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 203 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l-g~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a 203 (310)
.+|+.......+.+..++|-..|.+|++-.+.....|...+.+.+.. ++.+-|.+.|+.+++.-|++.. +|......
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~--~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD--FWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHH
Confidence 46888888888888899999999999977777788899999997775 5555599999999999998876 55443332
Q ss_pred --hhcChHHHHHhHHHhcC
Q 021611 204 --QLYGVDEARNRFLEVGR 220 (310)
Q Consensus 204 --~l~~~~eA~~~l~~~~~ 220 (310)
..++.+.++..|++...
T Consensus 80 l~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS 98 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC
T ss_pred HHHhCcHHHHHHHHHHHHH
Confidence 67889999999988543
No 259
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.17 E-value=0.15 Score=39.61 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=44.4
Q ss_pred hheeccccccchhhhhhccccCcc---------hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCC
Q 021611 133 LLFRQGDVVGSVAEFDKAIELDPR---------QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190 (310)
Q Consensus 133 ~~~~~g~~~eAl~~f~kAl~l~P~---------~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~ 190 (310)
-.++.|+|.+|++.+.+.+..... ...+..++|.++...|++++|+..+++++++...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345678999997776666554322 2467788999999999999999999999987543
No 260
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=88.09 E-value=0.37 Score=48.80 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=78.5
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhh---hhhhhhhhhhhhhhccCCCCCcccee
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL---DRFEEGAEQFRIDVAQNPNDTEESIW 197 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l---g~~~eA~~~f~~Al~l~P~d~~~~~~ 197 (310)
|.+.+-+..-|+--+..+....|+.+|.++++.-|+....+-+++.++.+. |+-=.|+.+-..|+++||-...+++|
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 455666677777777788889999999999999999888888998887765 56667888888999999977666666
Q ss_pred eeehhhhhcChHHHHHhHHH
Q 021611 198 CFLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 198 ~~l~~a~l~~~~eA~~~l~~ 217 (310)
.+.++.+++++.||+.+...
T Consensus 451 la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHH
Confidence 66666689999999987544
No 261
>PRK10941 hypothetical protein; Provisional
Probab=88.00 E-value=0.15 Score=47.50 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=49.3
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR 164 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~ 164 (310)
+..|....+.++. ++|+++.-+-.||.+|.++|.+..|+.|++.-++..|+++.+-.-+
T Consensus 197 ~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 197 MELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3344455555566 9999999999999999999999999999999999999998875433
No 262
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.70 E-value=0.49 Score=27.72 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=21.1
Q ss_pred hhhhhhhhhhhccchhhHHHHHHH
Q 021611 257 ASLYAGLFYESQKKADAAKLHILA 280 (310)
Q Consensus 257 a~~~lG~~~~~~G~~d~A~~~~~k 280 (310)
+++.+|..+..+|+.++|+..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 567899999999999999998864
No 263
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=87.35 E-value=0.35 Score=46.53 Aligned_cols=72 Identities=14% Similarity=0.208 Sum_probs=66.3
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
.-...+.+.+.+-+..+.+..|+..-..+++.+|....++|.+|..+..+.++++|++++..+...+|+|..
T Consensus 273 ~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 273 LRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred cccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 344666778889999999999999999999999999999999999999999999999999999999999865
No 264
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.33 E-value=0.38 Score=30.85 Aligned_cols=33 Identities=15% Similarity=0.370 Sum_probs=22.0
Q ss_pred hHHHhhccchhhhhhhhhhhhh--hhhhhccCCCC
Q 021611 159 AYLWQRGLSLYYLDRFEEGAEQ--FRIDVAQNPND 191 (310)
Q Consensus 159 ~a~~~~G~a~~~lg~~~eA~~~--f~~Al~l~P~d 191 (310)
+.++..|..++..|++++|++. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3566677777888888888888 44666666653
No 265
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.30 E-value=1.3 Score=47.26 Aligned_cols=29 Identities=17% Similarity=0.008 Sum_probs=24.9
Q ss_pred hHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 255 FYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 255 ~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
..|.|.+|..|+..|+..+|+..|.+|-.
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 44677899999999999999999988755
No 266
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=87.22 E-value=0.53 Score=44.85 Aligned_cols=159 Identities=13% Similarity=0.074 Sum_probs=94.7
Q ss_pred hhhhhcCCCCchhHHHHHHHhhhhheeccc------------cccchhhhhhccccCcchhhHHHhhccchhhhhhhhhh
Q 021611 110 IWDALTGGNNNSREAVVAIRRGMLLFRQGD------------VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEG 177 (310)
Q Consensus 110 ~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~------------~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA 177 (310)
.+++.+. .+|.|..+|..+....-..-. .+.-+..+++||+.+|++...+..+=.+..+..+-++.
T Consensus 7 el~~~v~--~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 7 ELNRRVR--ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHH--hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3556666 789999999888765544433 34567789999999998877776655555666777888
Q ss_pred hhhhhhhhccCCCCCccceeeeehhhhhc-----ChHHHHHhHHHhcCCChhhHHHHHHhhcCC-CChHHHHHHhcCCCC
Q 021611 178 AEQFRIDVAQNPNDTEESIWCFLCEAQLY-----GVDEARNRFLEVGRDPRPVMREAYNMFKGG-GDPEKLVAAFSSGRE 251 (310)
Q Consensus 178 ~~~f~~Al~l~P~d~~~~~~~~l~~a~l~-----~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~-~~~e~al~~~~~~~~ 251 (310)
.+.+++++..+|+++. +|.......++ .+.+.+..+.+. ...+... ... .........
T Consensus 85 ~~~we~~l~~~~~~~~--LW~~yL~~~q~~~~~f~v~~~~~~y~~~-----------l~~L~~~~~~~---~~~~~~~~~ 148 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPE--LWREYLDFRQSNFASFTVSDVRDVYEKC-----------LRALSRRRSGR---MTSHPDLPE 148 (321)
T ss_pred HHHHHHHHHHCCCChH--HHHHHHHHHHHHhccCcHHHHHHHHHHH-----------HHHHHHhhccc---cccccchhh
Confidence 8899999999998765 67654443332 233333333321 0000000 000 000000001
Q ss_pred cchh--HhhhhhhhhhhhccchhhHHHHHHHhhcCCC
Q 021611 252 NEYF--YASLYAGLFYESQKKADAAKLHILAACESPY 286 (310)
Q Consensus 252 ~d~~--~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~ 286 (310)
.+.. +....+.....+.|-.+.|+..++..++.+.
T Consensus 149 ~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 149 LEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 1111 1222244567788999999999999999654
No 267
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.19 E-value=0.3 Score=28.68 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=12.1
Q ss_pred HHHhhccchhhhhhhhhhhhhhh
Q 021611 160 YLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 160 a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44455555555555555555443
No 268
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.16 E-value=0.41 Score=40.24 Aligned_cols=71 Identities=14% Similarity=0.288 Sum_probs=58.7
Q ss_pred HHHHHHhhhhheecc---ccccchhhhhhccc-cCcch-hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611 124 AVVAIRRGMLLFRQG---DVVGSVAEFDKAIE-LDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE 194 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g---~~~eAl~~f~kAl~-l~P~~-~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~ 194 (310)
....+++++++.... +..+.|..++..++ -.|.. -...|.++..++++++|+.++...+..++.+|++.++
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 456678888877754 45678999999997 56654 6788899999999999999999999999999998763
No 269
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.08 E-value=0.14 Score=33.31 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=16.3
Q ss_pred HHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611 160 YLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 160 a~~~~G~a~~~lg~~~eA~~~f~~Al~l 187 (310)
.|..+|-+-...++|++|+++|++|+++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555556666666666666666554
No 270
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=86.76 E-value=0.34 Score=46.13 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=57.5
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccch
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSL 168 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~ 168 (310)
-.+.|..++.-++. +.|++++++...|...-.-++.-+|-.+|-+|+.++|.+.+++.+|....
T Consensus 131 k~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 131 KLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred chHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 45567777877887 99999999999999999999999999999999999999999999988654
No 271
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.62 E-value=4.6 Score=36.09 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=65.8
Q ss_pred cchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 142 GSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 142 eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
+.+....+-+.-+|.. .-+-..++..+...|++++|+..++.++..-. |.. ...+...
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~---lk~l~~l--------------- 130 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTK-DEN---LKALAAL--------------- 130 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch-hHH---HHHHHHH---------------
Confidence 4444444444445433 12334567777777888888888887775433 221 0000000
Q ss_pred cCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHh--hhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 219 GRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYA--SLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 219 ~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a--~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
++..+....+.++++++.+...... .+.+ .-..|-++..+|+-++|+..|.+|+++
T Consensus 131 ---------RLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 131 ---------RLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred ---------HHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 1112233355666666666532221 1222 235899999999999999999999995
No 272
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=86.36 E-value=0.34 Score=31.52 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=26.1
Q ss_pred HHHHHhhhhheeccccccchhhhhhcccc
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l 153 (310)
+.|..+|.+-+..++|++|+++|.+++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888999999999999999999999864
No 273
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.30 E-value=0.44 Score=40.59 Aligned_cols=83 Identities=19% Similarity=0.092 Sum_probs=67.2
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhh
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ 204 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~ 204 (310)
......-.+-+..++++++....+..--+.|+.+.....-|.++...|+|+||+..|+...+-.+..+.+......|+.-
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 34444445555589999999999999999999999999999999999999999999999999888777655555566665
Q ss_pred hcC
Q 021611 205 LYG 207 (310)
Q Consensus 205 l~~ 207 (310)
+|+
T Consensus 91 l~D 93 (153)
T TIGR02561 91 KGD 93 (153)
T ss_pred cCC
Confidence 555
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.09 E-value=1.6 Score=43.98 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=24.4
Q ss_pred hhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611 169 YYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 169 ~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~ 217 (310)
.+..+.+.-++.-++|++++|+.+.++. .|+.-......|+.+.+++
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYI--LLAEEeA~Ti~Eae~l~rq 225 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYI--LLAEEEASTIVEAEELLRQ 225 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHh--hcccccccCHHHHHHHHHH
Confidence 3445566666677777777776665322 3333222334445444443
No 275
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=85.88 E-value=0.32 Score=51.02 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=93.2
Q ss_pred HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh--
Q 021611 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA-- 203 (310)
Q Consensus 126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a-- 203 (310)
.|-..+.-|...|+|+-|.+.|.++=.. ..+.- .|.+.|+|++|.+.-.++.. |.+. .-.+++.+
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~~----~dai~----my~k~~kw~da~kla~e~~~--~e~t---~~~yiakaed 833 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADLF----KDAID----MYGKAGKWEDAFKLAEECHG--PEAT---ISLYIAKAED 833 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcchh----HHHHH----HHhccccHHHHHHHHHHhcC--chhH---HHHHHHhHHh
Confidence 3445577788899999999999876322 23332 34566899888777666543 3333 22333333
Q ss_pred --hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHh
Q 021611 204 --QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAA 281 (310)
Q Consensus 204 --~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kA 281 (310)
..|++.||...+..+.. |. .+..+|...|.++++++....--.......|...|.-++..|+...|..+|-+|
T Consensus 834 ldehgkf~eaeqlyiti~~-p~----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 834 LDEHGKFAEAEQLYITIGE-PD----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHhhcchhhhhheeEEccC-ch----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 46788888777665432 11 455678888888888888763222223345667899999999999999999887
Q ss_pred hc
Q 021611 282 CE 283 (310)
Q Consensus 282 l~ 283 (310)
-+
T Consensus 909 ~d 910 (1636)
T KOG3616|consen 909 GD 910 (1636)
T ss_pred hh
Confidence 66
No 276
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.48 E-value=0.48 Score=44.13 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=63.6
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc-cCCCCC
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA-QNPNDT 192 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~-l~P~d~ 192 (310)
.-|-.+.....++.+.+.+|||+||......|+.-+|+++..+.|+-.+-..+|.-.++.+.+-.-++ ..|+++
T Consensus 202 k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 202 KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 35566788889999999999999999999999999999999999999999999999999887655554 456554
No 277
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.12 E-value=2 Score=44.04 Aligned_cols=156 Identities=16% Similarity=0.097 Sum_probs=84.8
Q ss_pred hHHHHHHHhhhhheec-----cccccchhhhhhccc-------cCcchhhHHHhhccchhhhh-----hhhhhhhhhhhh
Q 021611 122 REAVVAIRRGMLLFRQ-----GDVVGSVAEFDKAIE-------LDPRQKAYLWQRGLSLYYLD-----RFEEGAEQFRID 184 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~-----g~~~eAl~~f~kAl~-------l~P~~~~a~~~~G~a~~~lg-----~~~eA~~~f~~A 184 (310)
.+..+.+.+|.++..- .|.+.|+..|.++.+ .. .+.+.+.+|.+|..-. +++.|+..|.++
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a 319 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA 319 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence 3456667777776653 688899999998877 22 3446667777766642 678899999999
Q ss_pred hccCCCCCccceeeeehhhh---h--cChHHHHHhHHHhcC-CChhhH-HHHHHhhcCCC---ChHHHHHHhcCCCCcch
Q 021611 185 VAQNPNDTEESIWCFLCEAQ---L--YGVDEARNRFLEVGR-DPRPVM-REAYNMFKGGG---DPEKLVAAFSSGRENEY 254 (310)
Q Consensus 185 l~l~P~d~~~~~~~~l~~a~---l--~~~~eA~~~l~~~~~-d~~~~~-~~a~~l~~~~~---~~e~al~~~~~~~~~d~ 254 (310)
.+....+.. + .++... . .+...|...+..+.. ...+.+ ..+.-+..+.| +.+.+...+...-....
T Consensus 320 A~~g~~~a~--~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 320 AELGNPDAQ--Y--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred HhcCCchHH--H--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 988764432 2 222221 1 234566666655432 222222 22221222222 24445554443222223
Q ss_pred hHhhhhhhhhhhhc-cchhhHHHHHHHhhc
Q 021611 255 FYASLYAGLFYESQ-KKADAAKLHILAACE 283 (310)
Q Consensus 255 ~~a~~~lG~~~~~~-G~~d~A~~~~~kAl~ 283 (310)
..+.+.++.+++.- ++.+.+.-.+....+
T Consensus 396 ~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 396 PSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred hhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 34444555544322 666666666665555
No 278
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=85.02 E-value=1.2 Score=45.58 Aligned_cols=77 Identities=10% Similarity=-0.003 Sum_probs=65.5
Q ss_pred CCchhHHHHHHH--hhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh-hhccCCCCCcc
Q 021611 118 NNNSREAVVAIR--RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI-DVAQNPNDTEE 194 (310)
Q Consensus 118 ~~~P~~~~a~~~--rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~-Al~l~P~d~~~ 194 (310)
.++|.++..+.. +...+...++...+...++.++..+|++..++.++|.++...|....++..+.. +.+..|++.+.
T Consensus 59 ~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~ 138 (620)
T COG3914 59 AINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEF 138 (620)
T ss_pred ccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHH
Confidence 366666655433 588889999999999999999999999999999999999999998888888877 89999988764
No 279
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.77 E-value=0.26 Score=45.89 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=85.8
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheec-cccccchhhhhhccccCcchhhHHHhhccchhhhhhhh-hhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ-GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFE-EGAEQ 180 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~-g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~-eA~~~ 180 (310)
.++.|..+...+|. +||.++..|..|-.++..+ .+..+-++.+++.++-+|++.+.|-.|-.+...+|+.. .=++.
T Consensus 58 ~S~RAl~LT~d~i~--lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 58 KSPRALQLTEDAIR--LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred cCHHHHHHHHHHHH--hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence 46667777777888 9999999999888877764 46677888999999999999999999999999999887 77888
Q ss_pred hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611 181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~ 217 (310)
.+.++..+.++-+++-++--+..-.+.++.-++...+
T Consensus 136 ~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 136 TKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 8889988887766332222333345666666555443
No 280
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.21 E-value=0.75 Score=41.43 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=54.4
Q ss_pred hHHHHHHHhhhhheeccc-------cccchhhhhhccccCcc------hhhHHHhhccchhhhhhhhhhhhhhhhhhccC
Q 021611 122 REAVVAIRRGMLLFRQGD-------VVGSVAEFDKAIELDPR------QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~-------~~eAl~~f~kAl~l~P~------~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~ 188 (310)
.-+..+..++++|..+|+ +..|++.|.+|++-... .....+..|.+..++|++++|+..|.+.+...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 456888888999999999 44677777777766532 25677889999999999999999999998654
Q ss_pred C
Q 021611 189 P 189 (310)
Q Consensus 189 P 189 (310)
.
T Consensus 196 ~ 196 (214)
T PF09986_consen 196 K 196 (214)
T ss_pred C
Confidence 3
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.84 E-value=0.46 Score=40.94 Aligned_cols=69 Identities=19% Similarity=0.092 Sum_probs=58.4
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF 174 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~ 174 (310)
..++..+.+.+-. +.|+.++.-..-|+.++..|++.+|+..|+.+.+-.|.++.+--.++.+++.+|+.
T Consensus 26 ~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 26 PDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred hHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 4456677766666 89999999999999999999999999999999999999887766778888777664
No 282
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=83.54 E-value=0.83 Score=48.59 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=23.2
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 257 ASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 257 a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
.+-|-|.+++.+|++|.|+.+|..|-.
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 345789999999999999999998865
No 283
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=82.92 E-value=6.5 Score=38.83 Aligned_cols=49 Identities=10% Similarity=-0.016 Sum_probs=28.7
Q ss_pred eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 136 RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 136 ~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
++|+.+.|..+-++|-+.-|.-++++...=......|+|++|++..+..
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 4566666666666666666666555544444445556666666655543
No 284
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=81.61 E-value=0.45 Score=45.32 Aligned_cols=79 Identities=10% Similarity=0.127 Sum_probs=62.9
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHh-hccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQ-RGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW 197 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~-~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~ 197 (310)
.-|+++..|.....--...|-|.+--..|.++++.+|.+...|.. -..-+...++++.+...|.+++++||+.|. +|
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~--iw 179 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR--IW 179 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch--HH
Confidence 456667777777766667777788888899999999999988877 556667779999999999999999998876 55
Q ss_pred ee
Q 021611 198 CF 199 (310)
Q Consensus 198 ~~ 199 (310)
..
T Consensus 180 ~e 181 (435)
T COG5191 180 IE 181 (435)
T ss_pred HH
Confidence 43
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.90 E-value=1.1 Score=42.10 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=56.4
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l 187 (310)
....++..+...+...|+++.+++.+++.++++|-+...|..+=.+++..|+...|+..|++.-+.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345677888888899999999999999999999998888888888889999999999988887664
No 286
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.74 E-value=1.8 Score=40.09 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=27.1
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccC-----cchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~-----P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l 187 (310)
.++-.-|+..-....+.|++..|+||..+- |+-...-..++-=..+--+.++|+..|++++.+
T Consensus 72 KayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralav 139 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAV 139 (308)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 344444444444555555555555554442 222222223332233334455555555554443
No 287
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.17 E-value=1.5 Score=42.44 Aligned_cols=66 Identities=15% Similarity=0.033 Sum_probs=54.2
Q ss_pred chhHHHHHH---HhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611 120 NSREAVVAI---RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV 185 (310)
Q Consensus 120 ~P~~~~a~~---~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al 185 (310)
||+-|-.-| ..+..+...|-|++|.+.-++++++||.+.++...++-++...||+.|+++...+.-
T Consensus 168 n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 168 NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 555543333 344567788999999999999999999999999999999999999999999877653
No 288
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=80.15 E-value=1 Score=43.77 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=55.6
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhhhhhhhhhhhhhhhhhccCC
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P 189 (310)
.++..+|.++.-++-++.+++.|++|+++--+. -..+..+|..+..+.++++|+-...+|.++-.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~ 193 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVN 193 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHH
Confidence 566678999999999999999999999986543 34577899999999999999999999988754
No 289
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.06 E-value=1.5 Score=44.27 Aligned_cols=85 Identities=8% Similarity=0.052 Sum_probs=70.0
Q ss_pred hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhh-hhhhhhhhhhhh
Q 021611 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR-FEEGAEQFRIDV 185 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~-~~eA~~~f~~Al 185 (310)
...+|..+.. .-|.|+..|.+--.-....+.+.+--..|.+++..+|+++..|..-+.=.+.-+. .+.|...|.+++
T Consensus 90 Iv~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3455666665 5556778887777666666778899999999999999999999998888888877 899999999999
Q ss_pred ccCCCCCc
Q 021611 186 AQNPNDTE 193 (310)
Q Consensus 186 ~l~P~d~~ 193 (310)
+.+|+.+.
T Consensus 168 R~npdsp~ 175 (568)
T KOG2396|consen 168 RFNPDSPK 175 (568)
T ss_pred hcCCCChH
Confidence 99999875
No 290
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.85 E-value=15 Score=32.91 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=51.8
Q ss_pred HHHhhcCCCChHHHHHHhc---CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC-CCC-CCChHHHHHHHHHhhc
Q 021611 229 AYNMFKGGGDPEKLVAAFS---SGRENEYFYASLYAGLFYESQKKADAAKLHILAACES-PYG-QRSDDYMAALAKVHSL 303 (310)
Q Consensus 229 a~~l~~~~~~~e~al~~~~---~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~-~~~-~~s~~~~~~la~~~~~ 303 (310)
+|.+....| .++|.+.+. .....+.....+.++.+|. .-+.++|+..+.+++++ +.+ ..+++.+.+|+.++.+
T Consensus 113 lYy~Wsr~~-d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 113 LYYHWSRFG-DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHhhccC-cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 443444334 444544442 2233344555566777776 67999999999999995 333 4678899999999999
Q ss_pred ccCC
Q 021611 304 CRNW 307 (310)
Q Consensus 304 ~~~~ 307 (310)
+|+.
T Consensus 191 ~~~~ 194 (203)
T PF11207_consen 191 LKNY 194 (203)
T ss_pred hcch
Confidence 9874
No 291
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.67 E-value=2 Score=44.54 Aligned_cols=92 Identities=9% Similarity=0.022 Sum_probs=70.7
Q ss_pred HHHhhhhheeccccccchhhhhhccccCcc------hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPR------QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL 200 (310)
Q Consensus 127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~------~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l 200 (310)
+-+-+.-.++..+|..+++.|...++--|. |.....++..+|..+.+.|.|++.+++|-+.+|..+-......-
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 335567788899999999999999988764 56677789999999999999999999999999987643222221
Q ss_pred hhhhhcChHHHHHhHHHh
Q 021611 201 CEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 201 ~~a~l~~~~eA~~~l~~~ 218 (310)
..+.-+.-++|+.++..+
T Consensus 437 ~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKI 454 (872)
T ss_pred HHHHhcchHHHHHHHHHH
Confidence 222456678888876553
No 292
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.59 E-value=0.76 Score=29.46 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=27.0
Q ss_pred HHHHHHhhhhheeccccccchhhhh--hccccCcch
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFD--KAIELDPRQ 157 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~--kAl~l~P~~ 157 (310)
++.++..|-.+..+|++++|+..|+ -+..++|.+
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3568889999999999999999954 888877753
No 293
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.69 E-value=1.9 Score=38.45 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=43.7
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcch-hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND 191 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d 191 (310)
.+-..++.+++.+|.+++|+...+..-. +.+ +...-.+|-++...|+-++|...|+++++.++..
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 5566777788888888888777765432 221 1223357888888888888888888888776543
No 294
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=76.19 E-value=1.1 Score=45.17 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=51.2
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccc-cccchhhhhhccccCcchhhHHH
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD-VVGSVAEFDKAIELDPRQKAYLW 162 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~-~~eAl~~f~kAl~l~P~~~~a~~ 162 (310)
......+|.+++. .+|++|+.|+.-+...+..+. .+.|-+.|.++|+.+|+.+..|.
T Consensus 121 ~~~v~ki~~~~l~--~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 121 YGEVKKIFAAMLA--KHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred hhHHHHHHHHHHH--hCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 5567789999998 999999999999999999888 89999999999999999887664
No 295
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.37 E-value=2.1 Score=32.53 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=38.4
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhc---cchhhhhhhhhhhhhhh
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRG---LSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G---~a~~~lg~~~eA~~~f~ 182 (310)
+.-.+..|.-+..+.+.++|+.-+.++++..++.+.-+.-+| .+|...|+|.++++.-.
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777777766554444333 56667777777766533
No 296
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=75.36 E-value=2.1 Score=42.49 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=54.7
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
.+--.+..+|+++++.+-|+.+-.+.|-++|..+..|...+.+...+.||.||...+--+
T Consensus 229 fIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 229 FIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578899999999999999999999999999999999999999999999999876655
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.97 E-value=1 Score=38.42 Aligned_cols=68 Identities=13% Similarity=0.013 Sum_probs=55.3
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR 173 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~ 173 (310)
..++..+.+..-- +.|+.++.-..-|++++..|++.||+..|+...+-.|.++-+--.++.+++.+|+
T Consensus 26 ~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 26 PYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 4456666666655 8899999999999999999999999999999999998877665556666666655
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=74.95 E-value=1.8 Score=37.63 Aligned_cols=52 Identities=15% Similarity=0.025 Sum_probs=24.5
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHhhcCCC-CCCChHHHHHHHHHhhcccCCc
Q 021611 257 ASLYAGLFYESQKKADAAKLHILAACESPY-GQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 257 a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~-~~~s~~~~~~la~~~~~~~~~~ 308 (310)
++.-+|..|...|+.++|+++|.++.+-.- ...-.+...++-++-.-.|+|.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 334455555555555555555555554110 0011334444455555555554
No 299
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=73.43 E-value=2.4 Score=39.75 Aligned_cols=69 Identities=14% Similarity=0.031 Sum_probs=55.4
Q ss_pred hHHHHHHHhhhhheec------cccccchhhhhhccccCcchhhHHHhhccchhhhhhh-----------------hhhh
Q 021611 122 REAVVAIRRGMLLFRQ------GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF-----------------EEGA 178 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~------g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~-----------------~eA~ 178 (310)
..+.++..+|.....+ +..++++..|.++++++|+...+|+..|..+..+=+. ..|+
T Consensus 250 ~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai 329 (352)
T PF02259_consen 250 LKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAI 329 (352)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHH
Confidence 4568889999988888 9999999999999999999999999888776655222 3377
Q ss_pred hhhhhhhccCCC
Q 021611 179 EQFRIDVAQNPN 190 (310)
Q Consensus 179 ~~f~~Al~l~P~ 190 (310)
..|-+|+...++
T Consensus 330 ~~y~~al~~~~~ 341 (352)
T PF02259_consen 330 EGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHhhCCC
Confidence 777777777765
No 300
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=73.38 E-value=1.6 Score=39.76 Aligned_cols=46 Identities=17% Similarity=0.073 Sum_probs=29.5
Q ss_pred chhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccC
Q 021611 143 SVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188 (310)
Q Consensus 143 Al~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~ 188 (310)
|+..|.+|+.+.|+....|+++|.+....|+.=+|+-.|-+++-..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence 4566667777777777777777777777777777776666666543
No 301
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=73.29 E-value=1.8 Score=44.32 Aligned_cols=81 Identities=19% Similarity=0.099 Sum_probs=70.7
Q ss_pred hhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhh-ccccCcchhhHHHhh------ccchhhhhhhhhhhhhhhh
Q 021611 111 WDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDK-AIELDPRQKAYLWQR------GLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 111 ~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~k-Al~l~P~~~~a~~~~------G~a~~~lg~~~eA~~~f~~ 183 (310)
....+. .||+++.++.++|.+....|....++.++.. +.+..|++......+ |..+-.+|+..++.....+
T Consensus 90 ~~~~l~--~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 167 (620)
T COG3914 90 KRIPLS--VNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALER 167 (620)
T ss_pred HhhhHh--cCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 345566 8999999999999999999999999888888 999999988877766 8888888999999999999
Q ss_pred hhccCCCCCc
Q 021611 184 DVAQNPNDTE 193 (310)
Q Consensus 184 Al~l~P~d~~ 193 (310)
+..+.|.+++
T Consensus 168 ~~d~~p~~~~ 177 (620)
T COG3914 168 AVDLLPKYPR 177 (620)
T ss_pred HHHhhhhhhh
Confidence 9999998865
No 302
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=73.25 E-value=0.96 Score=42.14 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=43.2
Q ss_pred CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhc
Q 021611 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRG 165 (310)
Q Consensus 118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G 165 (310)
.++|+++.-+-.||.+|.++|.+..|++++...++.-|+.+.+-.-++
T Consensus 209 ~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 209 DLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred hhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 389999999999999999999999999999999999999887754443
No 303
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=73.24 E-value=1.3 Score=43.95 Aligned_cols=91 Identities=13% Similarity=0.060 Sum_probs=63.3
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccC-cchh--------hHH--HhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-PRQK--------AYL--WQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~-P~~~--------~a~--~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~ 192 (310)
+...+..+..-...|+|..|++.+.+.-.+. |..+ ..+ -.+..+|+++++.+-|+..-.+++-+||-..
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4444444444444555555555555543332 2211 112 2578899999999999999999999999888
Q ss_pred ccceeeeehhhhhcChHHHHHh
Q 021611 193 EESIWCFLCEAQLYGVDEARNR 214 (310)
Q Consensus 193 ~~~~~~~l~~a~l~~~~eA~~~ 214 (310)
..++|...|...+.++.||...
T Consensus 263 rnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888889999888664
No 304
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=72.73 E-value=2.5 Score=41.80 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=49.2
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccC---------cchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELD---------PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~---------P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
+-+...+-.++..+|||..|+...+- |+++ +-+...+|..|.+|..++||.+|+..|...+-
T Consensus 122 YFSligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 122 YFSLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888899999999987543 2222 33567789999999999999999999999864
No 305
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=71.71 E-value=1.6 Score=37.98 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=69.1
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCc--ch-hhHHHhhccchhhhhhhhhhhhhhhhhhccC--CCCCccc---
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP--RQ-KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN--PNDTEES--- 195 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P--~~-~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~--P~d~~~~--- 195 (310)
-.++..+|..|.+.|+.++|++.|.++.+... .. ...+++.-.+.+..|+|........++-.+- +.|.+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 47899999999999999999999999887653 22 4566777788888899999999988886653 2232211
Q ss_pred -eeeeehhhhhcChHHHHHhHHHhcCC
Q 021611 196 -IWCFLCEAQLYGVDEARNRFLEVGRD 221 (310)
Q Consensus 196 -~~~~l~~a~l~~~~eA~~~l~~~~~d 221 (310)
.+.++.....+++.+|...|..+.++
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 11122222456778887777776554
No 306
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.19 E-value=6.6 Score=36.22 Aligned_cols=65 Identities=12% Similarity=-0.029 Sum_probs=38.7
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCc------chhhHHHhhccchhhhhhhhhhhhhhhhhhccCC
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP------RQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P------~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P 189 (310)
++.+..-|+.|-..++++.|=..|-+|-++.- +-...|...+.++ +.++.++|+.++++++++-.
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt 104 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYT 104 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHH
Confidence 34555555556566666666666666654432 1234455555553 44588888888888887643
No 307
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.72 E-value=9.6 Score=35.19 Aligned_cols=98 Identities=18% Similarity=0.142 Sum_probs=64.8
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhhh-hhhhhhhhhhhhhhccCCCCCc-
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYYL-DRFEEGAEQFRIDVAQNPNDTE- 193 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~l-g~~~eA~~~f~~Al~l~P~d~~- 193 (310)
+-+..|...+.+|-+ +++++|+..++++|++.-+- ...+...|.+|..- .+++.|+.+|+++-+--..+-.
T Consensus 72 Daat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ 150 (288)
T KOG1586|consen 72 DAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV 150 (288)
T ss_pred hHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence 345666666666654 69999999999999997652 23344677776655 8899999999999775333211
Q ss_pred ccee-eeeh----hhhhcChHHHHHhHHHhcC
Q 021611 194 ESIW-CFLC----EAQLYGVDEARNRFLEVGR 220 (310)
Q Consensus 194 ~~~~-~~l~----~a~l~~~~eA~~~l~~~~~ 220 (310)
..++ +.+- .++++++.+|++.+.++..
T Consensus 151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1111 1267888888888877543
No 308
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.47 E-value=2.5 Score=41.59 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=71.1
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheecccc--ccchhhhhhccccCcchhhHHHhhccchhhhhh----hhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDV--VGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR----FEE 176 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~--~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~----~~e 176 (310)
+.++-.+....++. .||+++.+|++|-.++.+.+.. ..=++..+++++.||.+..+|-.|=.+.....+ ..+
T Consensus 90 ~ld~eL~~~~~~L~--~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~ 167 (421)
T KOG0529|consen 90 LLDEELKYVESALK--VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKE 167 (421)
T ss_pred hhHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchh
Confidence 45556666667777 9999999999999999887765 677889999999999998888877666555543 345
Q ss_pred hhhhhhhhhccCCCCCccceeeeeh
Q 021611 177 GAEQFRIDVAQNPNDTEESIWCFLC 201 (310)
Q Consensus 177 A~~~f~~Al~l~P~d~~~~~~~~l~ 201 (310)
=++.-.+++.-|+.+-. +|.+..
T Consensus 168 El~ftt~~I~~nfSNYs--aWhyRs 190 (421)
T KOG0529|consen 168 ELEFTTKLINDNFSNYS--AWHYRS 190 (421)
T ss_pred HHHHHHHHHhccchhhh--HHHHHH
Confidence 55666777777776655 565543
No 309
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.64 E-value=27 Score=38.63 Aligned_cols=157 Identities=10% Similarity=0.011 Sum_probs=90.0
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc--CCCCCccceeee
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ--NPNDTEESIWCF 199 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l--~P~d~~~~~~~~ 199 (310)
+.|..|..+|.+.++.|...+|++.|-|| +++..|..--.+-.+.|.|++=+..+.-|-+- .|. .+... -
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~-id~eL--i 1173 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY-IDSEL--I 1173 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc-chHHH--H
Confidence 34688888888888888888888888664 55667777667777888888888877666543 232 11111 2
Q ss_pred ehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHH
Q 021611 200 LCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHIL 279 (310)
Q Consensus 200 l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~ 279 (310)
.+.++.++..|-.+.+. ++.....-...-..|. .+.+++|.-.+....+ +--++..+..+|++..|.+.-+
T Consensus 1174 ~AyAkt~rl~elE~fi~--gpN~A~i~~vGdrcf~-~~~y~aAkl~y~~vSN------~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA--GPNVANIQQVGDRCFE-EKMYEAAKLLYSNVSN------FAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHHHhchHHHHHHHhc--CCCchhHHHHhHHHhh-hhhhHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHhh
Confidence 23445555544333222 1211111000111222 2334555444432211 2236677777899999998888
Q ss_pred HhhcCCCCCCChHHHHHHHHHhh
Q 021611 280 AACESPYGQRSDDYMAALAKVHS 302 (310)
Q Consensus 280 kAl~~~~~~~s~~~~~~la~~~~ 302 (310)
+|... ..|..++.++.
T Consensus 1245 KAns~-------ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1245 KANST-------KTWKEVCFACV 1260 (1666)
T ss_pred hccch-------hHHHHHHHHHh
Confidence 88662 34556665554
No 310
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.61 E-value=2.3 Score=43.80 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=31.2
Q ss_pred ccccccchhhhhhccccCcch--hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 137 QGDVVGSVAEFDKAIELDPRQ--KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 137 ~g~~~eAl~~f~kAl~l~P~~--~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
+|+..+|+.++.+++-+-|.. ..+...+|.++.+.|...+|--.+..|+.-.|...+
T Consensus 226 ~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~ 284 (886)
T KOG4507|consen 226 KGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTS 284 (886)
T ss_pred cCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccc
Confidence 555556666666655555543 234455555555555555555555555555554444
No 311
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=68.01 E-value=9 Score=39.20 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=89.5
Q ss_pred hHHHHHHHhhhhheeccc--------------cccchhhhhhccccCcchhhHHHhhccchhhhhh-----hhhhhhhhh
Q 021611 122 REAVVAIRRGMLLFRQGD--------------VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR-----FEEGAEQFR 182 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~--------------~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~-----~~eA~~~f~ 182 (310)
-.+++|+.-.+-+...++ -+++...|+++|..--... ....-|.+-+..++ ++.--+.++
T Consensus 277 ~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~-~~Ly~~~a~~eE~~~~~n~~~~~~~~~~ 355 (656)
T KOG1914|consen 277 YHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN-KLLYFALADYEESRYDDNKEKKVHEIYN 355 (656)
T ss_pred cCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHhcccchhhhhHHHHH
Confidence 345566655555555554 6778888888887654431 22222333333322 233444566
Q ss_pred hhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcCCChhh---H-HHHHHhhcCCCChHHHHHHhcCCCC--cc-
Q 021611 183 IDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGRDPRPV---M-REAYNMFKGGGDPEKLVAAFSSGRE--NE- 253 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~---~-~~a~~l~~~~~~~e~al~~~~~~~~--~d- 253 (310)
+.+.+.-.++. ..|+.+... +..+.+.|+..|.++..+++.. + ..++.-+.-.++.+-|.+.++.++. ++
T Consensus 356 ~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~ 434 (656)
T KOG1914|consen 356 KLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDS 434 (656)
T ss_pred HHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC
Confidence 66665444443 233332222 5567888999999887765532 1 2232223345677778888775432 11
Q ss_pred hhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 254 YFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 254 ~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
+.+..-|+ .++...|+-..|+..|++++..
T Consensus 435 p~yv~~Yl-dfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 435 PEYVLKYL-DFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred hHHHHHHH-HHHHHhCcchhHHHHHHHHHhc
Confidence 22211122 3456689999999999999985
No 312
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=67.96 E-value=2.7 Score=45.82 Aligned_cols=70 Identities=13% Similarity=0.173 Sum_probs=55.3
Q ss_pred HHHHHHHhhhhheeccc-------cccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 123 EAVVAIRRGMLLFRQGD-------VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~-------~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
..++.+..|.+++.+-. +++|+..|++.- -.|.-|--|..++++|.++|+|+|=+++|..|++.-|++|+
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 511 GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 46889999998887543 455555555432 24566677889999999999999999999999999999986
No 313
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=67.06 E-value=28 Score=31.85 Aligned_cols=157 Identities=13% Similarity=-0.014 Sum_probs=84.1
Q ss_pred HHHHHhhhhhee----ccccccchhhhhhccccCcchhhHHHhhccchhh----hhhhhhhhhhhhhhhccCCCCCccce
Q 021611 125 VVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY----LDRFEEGAEQFRIDVAQNPNDTEESI 196 (310)
Q Consensus 125 ~a~~~rG~~~~~----~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~----lg~~~eA~~~f~~Al~l~P~d~~~~~ 196 (310)
.+.+.+|..+.. ..+..+|+..|.++. +...+.+.+.+|.++.. ..++.+|...|++|.+..-... ...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~~ 150 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-ALA 150 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HHH
Confidence 444444444443 456777888888444 44555677777777766 4588999999999888754322 000
Q ss_pred eeeehhh-hhc--------ChHHHHHhHHHhcCC-ChhhHH-HHHHhhcCCC---ChHHHHHHhcCCCCcchhHhhhhhh
Q 021611 197 WCFLCEA-QLY--------GVDEARNRFLEVGRD-PRPVMR-EAYNMFKGGG---DPEKLVAAFSSGRENEYFYASLYAG 262 (310)
Q Consensus 197 ~~~l~~a-~l~--------~~~eA~~~l~~~~~d-~~~~~~-~a~~l~~~~~---~~e~al~~~~~~~~~d~~~a~~~lG 262 (310)
...++.. ..| +...|...+.++... ...... ....+..+.| +.+++...+..........+++.+|
T Consensus 151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~ 230 (292)
T COG0790 151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG 230 (292)
T ss_pred HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1111111 111 122455555543221 111111 2222233322 4566766665332222255666777
Q ss_pred hhhhhcc---------------chhhHHHHHHHhhcCC
Q 021611 263 LFYESQK---------------KADAAKLHILAACESP 285 (310)
Q Consensus 263 ~~~~~~G---------------~~d~A~~~~~kAl~~~ 285 (310)
++...| +...|...+.++....
T Consensus 231 -~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 231 -LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred -HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 555444 7888888888888843
No 314
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=66.88 E-value=17 Score=33.89 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=45.7
Q ss_pred chhHHHHHHHhhhhheeccccccchhhhhhccccCcc----hhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR----QKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 120 ~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~----~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
.......|...+.+....|+++.|...+.++...++. .+...+..+..+...|+-++|+..++..++
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777766521 345666667777777777777777776666
No 315
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=65.92 E-value=6 Score=37.05 Aligned_cols=94 Identities=11% Similarity=0.080 Sum_probs=78.6
Q ss_pred hhhhhhhcCCCCchhHHHHHHHhhhhheeccccc-cchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVV-GSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 108 ~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~-eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
.+..+++++ -+|+|+..|.+|-.+.-..|++. .-++-..++|..|.++.-+|-.|-.+....+.|+.=+..-...++
T Consensus 98 l~~l~eI~e--~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle 175 (318)
T KOG0530|consen 98 LEYLDEIIE--DNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLE 175 (318)
T ss_pred HHHHHHHHH--hCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344556677 89999999999999999999999 888888999999999999999999999999999999999999999
Q ss_pred cCCCCCccceeeeehhh
Q 021611 187 QNPNDTEESIWCFLCEA 203 (310)
Q Consensus 187 l~P~d~~~~~~~~l~~a 203 (310)
.|--+-.++..++....
T Consensus 176 ~Di~NNSAWN~Ryfvi~ 192 (318)
T KOG0530|consen 176 EDIRNNSAWNQRYFVIT 192 (318)
T ss_pred HhhhccchhheeeEEEE
Confidence 88665555444544444
No 316
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.84 E-value=20 Score=36.81 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=86.9
Q ss_pred ccccchhhhhhccccCcchhhHHHhhccchhhh-----hhhhhhhhhhhhhhc-------cCCCCCccceeeeehhhhh-
Q 021611 139 DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL-----DRFEEGAEQFRIDVA-------QNPNDTEESIWCFLCEAQL- 205 (310)
Q Consensus 139 ~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l-----g~~~eA~~~f~~Al~-------l~P~d~~~~~~~~l~~a~l- 205 (310)
+..+|...|+.+-.+. +..+.+.+|.+++.- .+.+.|+..|+.+.+ .. ++. +...++....
T Consensus 227 ~~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~--a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPP--AQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCc--cccHHHHHHhc
Confidence 3456777777776654 346667778777655 789999999999977 22 121 2233333311
Q ss_pred -----c-ChHHHHHhHHHhcC-C-ChhhHHHHHHhhcCC--CChHHHHHHhcCCCCcchhHhhhhhhhhhhh----ccch
Q 021611 206 -----Y-GVDEARNRFLEVGR-D-PRPVMREAYNMFKGG--GDPEKLVAAFSSGRENEYFYASLYAGLFYES----QKKA 271 (310)
Q Consensus 206 -----~-~~~eA~~~l~~~~~-d-~~~~~~~a~~l~~~~--~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~----~G~~ 271 (310)
. +.+.|...+.+... + +...+..+..+..+. .+...|...+..........+.++++.+|.. .-+.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence 1 45667777766433 2 322233333334444 3456787777755544566677888888752 2478
Q ss_pred hhHHHHHHHhhc
Q 021611 272 DAAKLHILAACE 283 (310)
Q Consensus 272 d~A~~~~~kAl~ 283 (310)
+.|+.+|.+|.+
T Consensus 381 ~~A~~~~k~aA~ 392 (552)
T KOG1550|consen 381 ELAFAYYKKAAE 392 (552)
T ss_pred HHHHHHHHHHHH
Confidence 999999999998
No 317
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.43 E-value=3.9 Score=39.72 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=62.4
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhcccc-----Ccc------------------------hhhHHHhhccchh
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-----DPR------------------------QKAYLWQRGLSLY 169 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l-----~P~------------------------~~~a~~~~G~a~~ 169 (310)
.+|...+++.+++.++..+|+++.|.+..+|||=. .|. +..+.+.....+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 78999999999999999999999999998888522 122 2334556667778
Q ss_pred hhhhhhhhhhhhhhhhccCCC-CCcc
Q 021611 170 YLDRFEEGAEQFRIDVAQNPN-DTEE 194 (310)
Q Consensus 170 ~lg~~~eA~~~f~~Al~l~P~-d~~~ 194 (310)
+.|-+..|.+..+-.+.+||. ||.+
T Consensus 115 ~RG~~rTAlE~~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLDPDEDPLG 140 (360)
T ss_pred hcCcHHHHHHHHHHHHhcCCCCCcch
Confidence 889999999999999999999 7753
No 318
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=65.35 E-value=17 Score=33.33 Aligned_cols=168 Identities=18% Similarity=0.081 Sum_probs=94.1
Q ss_pred HHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchh----hhhhhhhhhhhhhhhhccCCCCCccceeeeehh
Q 021611 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLY----YLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE 202 (310)
Q Consensus 127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~----~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~ 202 (310)
.+..+......+++..|+..+.++-..... .+...+|..+. ...+..+|++.|+.+.+.. ++.+.. .++.
T Consensus 44 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~--~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g--~~~a~~--~lg~ 117 (292)
T COG0790 44 ALLNGAGSAYPPDYAKALKSYEKAAELGDA--AALALLGQMYGAGKGVSRDKTKAADWYRCAAADG--LAEALF--NLGL 117 (292)
T ss_pred cccccccccccccHHHHHHHHHHhhhcCCh--HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc--cHHHHH--hHHH
Confidence 344455566778888888888888773322 44444444444 3467899999999665543 333222 2333
Q ss_pred hh------hcChHHHHHhHHHhcC-CChhh----HHHHHHhhcC---CCC---hHHHHHHhcCCCCcchhHhhhhhhhhh
Q 021611 203 AQ------LYGVDEARNRFLEVGR-DPRPV----MREAYNMFKG---GGD---PEKLVAAFSSGRENEYFYASLYAGLFY 265 (310)
Q Consensus 203 a~------l~~~~eA~~~l~~~~~-d~~~~----~~~a~~l~~~---~~~---~e~al~~~~~~~~~d~~~a~~~lG~~~ 265 (310)
.. ..+..+|...+.++.. ...+. +.....+..+ .+- ...+...+..........+.+.+|.+|
T Consensus 118 ~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y 197 (292)
T COG0790 118 MYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMY 197 (292)
T ss_pred HHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 31 1267888888877543 22222 2222222222 111 123444443222222344666788766
Q ss_pred hh----ccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611 266 ES----QKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCR 305 (310)
Q Consensus 266 ~~----~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~ 305 (310)
.. ..+.++|..+|.+|.+... ......++ +....|
T Consensus 198 ~~G~Gv~~d~~~A~~wy~~Aa~~g~----~~a~~~~~-~~~~~g 236 (292)
T COG0790 198 EKGLGVPRDLKKAFRWYKKAAEQGD----GAACYNLG-LMYLNG 236 (292)
T ss_pred HcCCCCCcCHHHHHHHHHHHHHCCC----HHHHHHHH-HHHhcC
Confidence 43 3488999999999999332 45566666 555444
No 319
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=64.39 E-value=4 Score=30.67 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=16.0
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccc
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIE 152 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~ 152 (310)
+..+..++.-+-..|++++|+..|.++|+
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44455556666666666655555544443
No 320
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.40 E-value=4.4 Score=38.22 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=42.4
Q ss_pred cccccchhhhhhccccCcch----hhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 138 GDVVGSVAEFDKAIELDPRQ----KAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 138 g~~~eAl~~f~kAl~l~P~~----~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
.++++|+..|.+++++.|.- ..|+-++-.+.+++|+|++..+.|.+.+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 48999999999999999863 45777888999999999999999988654
No 321
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=62.12 E-value=1.5 Score=41.91 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=50.6
Q ss_pred chhcccchhhhhhhhcCCCCchhHHHHHHH-hhhhheeccccccchhhhhhccccCcchhhHHH
Q 021611 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIR-RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLW 162 (310)
Q Consensus 100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~-rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~ 162 (310)
+++.....-.+|.+++. .+|.|++.|.. ...-+..-++.+.+.+.|.++++++|+.+..|+
T Consensus 119 k~k~y~~~~nI~~~~l~--khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 119 KKKMYGEMKNIFAECLT--KHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHHh--cCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34455556677888887 99999999998 556777899999999999999999999887665
No 322
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=61.43 E-value=5.7 Score=32.15 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=31.7
Q ss_pred hhhheeccccccchhhhhhccccCcchh---hHHHhhccchhhhhh-----------hhhhhhhhhhhhccCCCC
Q 021611 131 GMLLFRQGDVVGSVAEFDKAIELDPRQK---AYLWQRGLSLYYLDR-----------FEEGAEQFRIDVAQNPND 191 (310)
Q Consensus 131 G~~~~~~g~~~eAl~~f~kAl~l~P~~~---~a~~~~G~a~~~lg~-----------~~eA~~~f~~Al~l~P~d 191 (310)
+..++..|++-.|++..+..+..++++. -.+...|.+++.+.. +-.++++|.++..+.|+.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 3344555555555555555555555443 334445555544432 234556666666666654
No 323
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=61.24 E-value=9 Score=38.84 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=65.2
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC 198 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~ 198 (310)
..|.+|..-.-++.+...+|+|++|.++..-+=.+=..-..+..-+=..++.+||+++|...-+-.+.-.-.+++.. -.
T Consensus 318 ~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~-~i 396 (831)
T PRK15180 318 NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVL-TV 396 (831)
T ss_pred hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhhe-ee
Confidence 66777888888899999999999998877655444333334444455567788888888887766666555556532 22
Q ss_pred eehhh-hhcChHHHHHhHHH
Q 021611 199 FLCEA-QLYGVDEARNRFLE 217 (310)
Q Consensus 199 ~l~~a-~l~~~~eA~~~l~~ 217 (310)
..+.+ +++-++++.-..++
T Consensus 397 aa~sa~~l~~~d~~~~~wk~ 416 (831)
T PRK15180 397 AAGSADALQLFDKSYHYWKR 416 (831)
T ss_pred ecccHHHHhHHHHHHHHHHH
Confidence 22333 56667777776554
No 324
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.47 E-value=25 Score=31.56 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=34.0
Q ss_pred hhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHH
Q 021611 254 YFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAK 299 (310)
Q Consensus 254 ~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~ 299 (310)
.....+.+|.+....|++++|.++|.+.+..+.... +..+..+|+
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~-~~~l~~~AR 208 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK-EPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC-cHHHHHHHH
Confidence 445667799999999999999999999999543322 345566655
No 325
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=60.07 E-value=4.7 Score=32.64 Aligned_cols=30 Identities=7% Similarity=0.077 Sum_probs=23.4
Q ss_pred hccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 164 RGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 164 ~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
++.-++..|++-+|++..+..+...+++..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~ 31 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES 31 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence 345567788888888888888888887764
No 326
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=58.79 E-value=4.3 Score=40.67 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=22.7
Q ss_pred heeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 134 LFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 134 ~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
++.+|+|.++.-.-.=..++.| .+.++.-+|.+++...+|+||.+++.
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344444444444444444444 44444444444444444444444443
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.90 E-value=4.5 Score=36.92 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=50.9
Q ss_pred hheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 133 LLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 133 ~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
.+++.+..++||.....-++-+|.+......+-..+...|+|+.|...++-+-++.|++..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 3556678889999999999999988877777777788889999999999999999998753
No 328
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=56.09 E-value=7.7 Score=36.89 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=42.3
Q ss_pred HHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
....+..|...|.+.+|++..+++++++|-+...+..+-.++..+|+-=+|++.|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444667777888888888888888888887777777777777777766666666554
No 329
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=56.05 E-value=5.5 Score=35.66 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=47.8
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcc----hhhHHHhhccchhhhhhhhhhh
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR----QKAYLWQRGLSLYYLDRFEEGA 178 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~----~~~a~~~~G~a~~~lg~~~eA~ 178 (310)
++++..+.+|..|. ..|.+.|+..+.+++++.+. ++..+..++.+++.+|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 57889999998887 58899999999999999754 3778888999999999998873
No 330
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.14 E-value=24 Score=35.88 Aligned_cols=88 Identities=13% Similarity=0.078 Sum_probs=60.7
Q ss_pred hhcccchhhhhhhhcCC----CCch-h-------HHHHHHHhhhhheeccccccchhhhhhccccC---cc-------hh
Q 021611 101 RLFIPSVSGIWDALTGG----NNNS-R-------EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD---PR-------QK 158 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~----~~~P-~-------~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~---P~-------~~ 158 (310)
+|++..+..+-|++|-- ...| . -...+-++.++-.-.|++.+|++....+.+.- |. .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 44666777777776531 1222 1 12455677888888999999998777666554 33 23
Q ss_pred hHHHhhccchhhhhhhhhhhhhhhhhhccC
Q 021611 159 AYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188 (310)
Q Consensus 159 ~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~ 188 (310)
..++-+|.=-..-+-|++|...|..|.++-
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t 397 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLT 397 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhh
Confidence 456677877777889999999999998864
No 331
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=54.85 E-value=1.1e+02 Score=27.90 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=24.6
Q ss_pred cchhHhhhh--hhhhh---------hhccchhhHHHHHHHhhcCCC
Q 021611 252 NEYFYASLY--AGLFY---------ESQKKADAAKLHILAACESPY 286 (310)
Q Consensus 252 ~d~~~a~~~--lG~~~---------~~~G~~d~A~~~~~kAl~~~~ 286 (310)
+|...+.++ +|..+ ...++...|..++++|++++.
T Consensus 164 pd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 164 PDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 344444444 77766 456788999999999999653
No 332
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.13 E-value=24 Score=35.84 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=48.5
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcc-hhhH--HHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR-QKAY--LWQRGLSLYYLDRFEEGAEQFRIDVAQNPND 191 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~-~~~a--~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d 191 (310)
.+..++-+|.-....|-|++|...|..|.++-.. +-.+ -.+++.+|.+.|+-+.--+. .-.+.|.+
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~---ld~i~p~n 434 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKA---LDLIGPLN 434 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHH---HHhcCCCC
Confidence 5688999999999999999999999999998654 3344 34688888887765443333 23356654
No 333
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=52.74 E-value=7.7 Score=37.57 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=44.6
Q ss_pred hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHH
Q 021611 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYL 161 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~ 161 (310)
+......++. .++....+++.||+.+..+.++++|+++...+....|++...-
T Consensus 294 a~~~~~~~~~--~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~ 346 (372)
T KOG0546|consen 294 ARFRTNEALR--DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIE 346 (372)
T ss_pred ceeccccccc--cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHH
Confidence 3343445555 7888999999999999999999999999999999999986543
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=51.64 E-value=5.6 Score=26.65 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=11.8
Q ss_pred Hhhhhheeccccccchhhhhhcc
Q 021611 129 RRGMLLFRQGDVVGSVAEFDKAI 151 (310)
Q Consensus 129 ~rG~~~~~~g~~~eAl~~f~kAl 151 (310)
+++.+|+..|++++|.+..++++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 44445555555555555555554
No 335
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=51.28 E-value=5.6 Score=33.51 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=42.5
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhh
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEG 177 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA 177 (310)
.+....++...+..|++.-|++..+.++..+|++..+..-++.++..+|.-.+.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 467778888888999999999999999999999999988888888888765543
No 336
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=50.37 E-value=39 Score=35.93 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=25.1
Q ss_pred hhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 158 KAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 158 ~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
..|+.+.|.-+..+..|++|.+.|.++--
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56888999999999999999999988743
No 337
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.29 E-value=28 Score=30.89 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=56.9
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcc----hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeee
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR----QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCF 199 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~----~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~ 199 (310)
..+.+..|.++...|+-.+|+.+|+.+-.-.|- -..+...-+.++...|-|++-....+- +.-+.+-....+.-.
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvep-La~d~n~mR~sArEA 172 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP-LAGDGNPMRHSAREA 172 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhh-ccCCCChhHHHHHHH
Confidence 356677788888888888888888877666542 133445556667777777776554432 222211122223333
Q ss_pred ehhh--hhcChHHHHHhHHHhcC
Q 021611 200 LCEA--QLYGVDEARNRFLEVGR 220 (310)
Q Consensus 200 l~~a--~l~~~~eA~~~l~~~~~ 220 (310)
|+.+ +.|++..|...|..+..
T Consensus 173 LglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhHHHHhccchHHHHHHHHHHHc
Confidence 4444 56777777777776544
No 338
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=49.42 E-value=13 Score=38.05 Aligned_cols=72 Identities=8% Similarity=-0.090 Sum_probs=64.9
Q ss_pred hhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611 113 ALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 113 ~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l 187 (310)
+-|. .||.|.++|+.+-.-+-.+ .+++..+.|++-+.-.|..+.+|..-....+...+|+.-...|.+|+.-
T Consensus 11 ~rie--~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 11 ERIE--ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHh--cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4455 8999999999998877777 9999999999999999999999998888889999999999999999864
No 339
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=44.50 E-value=6.4 Score=35.68 Aligned_cols=62 Identities=8% Similarity=-0.085 Sum_probs=51.1
Q ss_pred hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhh
Q 021611 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY 170 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~ 170 (310)
|...|.+|+. +.|++-..|.++|++....|+.-+|+=.|-|++--.--++.+.-++...+.+
T Consensus 1 A~~~Y~~A~~--l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIR--LLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH--H-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHH--hCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 4567888988 9999999999999999999999999999999998776678888888777766
No 340
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.19 E-value=21 Score=23.87 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=23.0
Q ss_pred hhhhhhhhhccchhhHHHHHHHhhc
Q 021611 259 LYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 259 ~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
+.++..|..+|+.+.|+..++..++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4688899999999999999999997
No 341
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=43.09 E-value=43 Score=32.85 Aligned_cols=60 Identities=10% Similarity=-0.040 Sum_probs=33.1
Q ss_pred hhHHHhhccchhhhhhhhhhhhhhhhhhcc----CCCCCccceeeeehhhh---hcChHHHHHhHHH
Q 021611 158 KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ----NPNDTEESIWCFLCEAQ---LYGVDEARNRFLE 217 (310)
Q Consensus 158 ~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l----~P~d~~~~~~~~l~~a~---l~~~~eA~~~l~~ 217 (310)
+....++=+.|-...+|+..++..+..-.+ -++.+.....+++++-+ .|+.++|+..+..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~ 207 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLP 207 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHH
Confidence 344456666677778888777777665555 22222222223333333 5666777766655
No 342
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.90 E-value=16 Score=31.73 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=44.6
Q ss_pred eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCC
Q 021611 136 RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190 (310)
Q Consensus 136 ~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~ 190 (310)
.....+..++..++.++..|+ +..+.+++.++...|+.++|....+++..+=|.
T Consensus 123 ~~~~l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 123 DPEMLEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred CHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344455667788888888894 677778899999999999999999999999884
No 343
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.87 E-value=19 Score=35.63 Aligned_cols=54 Identities=20% Similarity=0.106 Sum_probs=40.6
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHhhc-CCCCCCChHHHHHHHHHhhcccCCcCC
Q 021611 257 ASLYAGLFYESQKKADAAKLHILAACE-SPYGQRSDDYMAALAKVHSLCRNWSSV 310 (310)
Q Consensus 257 a~~~lG~~~~~~G~~d~A~~~~~kAl~-~~~~~~s~~~~~~la~~~~~~~~~~~~ 310 (310)
++--+|..|...|+++.|++.|.++-. .....-..+.+.++-++-..+|||.-|
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv 206 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHV 206 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhh
Confidence 444588899999999999999999766 111222345556889999999999864
No 344
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=42.66 E-value=23 Score=26.84 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=21.7
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 257 ASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 257 a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
.....|+.++..|+.++|+.+|++++.
T Consensus 10 ~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 10 EEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 344577888888999999999999886
No 345
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=41.87 E-value=15 Score=36.29 Aligned_cols=93 Identities=11% Similarity=0.083 Sum_probs=69.7
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheecc------------ccccchhhhhhccccCcchhhHHHhhccchhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG------------DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY 170 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g------------~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~ 170 (310)
+..++..+-.+++. .||+.+.+|..|=.++...- -.++-+.....+++.+|+...+|+.|-.++.+
T Consensus 44 yd~e~l~lt~~ll~--~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~ 121 (421)
T KOG0529|consen 44 YDEEHLELTSELLE--KNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK 121 (421)
T ss_pred cchHHHHHHHHHHh--hCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 34445555555666 89999999988766554432 24455667778999999999999999999887
Q ss_pred hhh--hhhhhhhhhhhhccCCCCCcccee
Q 021611 171 LDR--FEEGAEQFRIDVAQNPNDTEESIW 197 (310)
Q Consensus 171 lg~--~~eA~~~f~~Al~l~P~d~~~~~~ 197 (310)
.+. +..=+...++++++||.+-+++.+
T Consensus 122 ~p~~~~~~EL~lcek~L~~D~RNfh~W~Y 150 (421)
T KOG0529|consen 122 NPHSDWNTELQLCEKALKQDPRNFHAWHY 150 (421)
T ss_pred CCCchHHHHHHHHHHHHhcCcccccchHH
Confidence 754 678888999999999998875433
No 346
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=41.03 E-value=28 Score=25.03 Aligned_cols=25 Identities=12% Similarity=-0.036 Sum_probs=21.3
Q ss_pred hhhhhhhhhccchhhHHHHHHHhhc
Q 021611 259 LYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 259 ~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
...|.-.+..|++++|+.+|.+|++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567788889999999999999987
No 347
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.24 E-value=77 Score=31.91 Aligned_cols=124 Identities=16% Similarity=0.272 Sum_probs=67.1
Q ss_pred hccccCcchhhH------HHhhccchhhhhhhhhhhhhhhhh-----------hccCCCCCc---cceeeeehhhhhcCh
Q 021611 149 KAIELDPRQKAY------LWQRGLSLYYLDRFEEGAEQFRID-----------VAQNPNDTE---ESIWCFLCEAQLYGV 208 (310)
Q Consensus 149 kAl~l~P~~~~a------~~~~G~a~~~lg~~~eA~~~f~~A-----------l~l~P~d~~---~~~~~~l~~a~l~~~ 208 (310)
+-+.+-|..-.+ +..+|.+......|++|+..+-.| ++.-.|.+. -..|+++++......
T Consensus 148 r~v~lppsE~kAlmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL 227 (568)
T KOG2561|consen 148 RKVQLPPSEQKALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCL 227 (568)
T ss_pred CeeecChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccC
Confidence 445555654443 335667777778899888776655 222222221 125777666544444
Q ss_pred HHHHHhHHHhcCCChhh----HHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 209 DEARNRFLEVGRDPRPV----MREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 209 ~eA~~~l~~~~~d~~~~----~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
..|..++....+..... +..++ .+++...+|.|+ ....++..|...+.+|+-++|..+++.|..
T Consensus 228 ~DAe~RL~ra~kgf~~syGenl~Rl~-~lKg~~spEraL----------~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 228 PDAEVRLVRARKGFERSYGENLSRLR-SLKGGQSPERAL----------ILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred ChHHHHHHHHHHhhhhhhhhhhHhhh-hccCCCChhHHH----------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45544444322211110 11111 222222233221 223455688999999999999999999876
No 348
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=38.66 E-value=11 Score=27.08 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=9.7
Q ss_pred ccchhhhhhhhhhhhhhhhhh
Q 021611 165 GLSLYYLDRFEEGAEQFRIDV 185 (310)
Q Consensus 165 G~a~~~lg~~~eA~~~f~~Al 185 (310)
|.-.-..|++++|++.|.+++
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 333334455555555554443
No 349
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.48 E-value=10 Score=32.05 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=34.8
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHH
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYL 161 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~ 161 (310)
.-+-.|.++..+.++|+|+.|+...+..++.+|++.++.
T Consensus 70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 346778889999999999999999999999999998874
No 350
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.03 E-value=29 Score=26.53 Aligned_cols=31 Identities=16% Similarity=0.000 Sum_probs=27.1
Q ss_pred hhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 254 YFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 254 ~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
...+.+.++.++...|+.++|+..+++|+++
T Consensus 40 ~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 40 LAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4456777899999999999999999999995
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=36.70 E-value=42 Score=36.30 Aligned_cols=67 Identities=12% Similarity=0.004 Sum_probs=56.5
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcch-----hhHHHhhccchhhhhhhhhhhhhhhhhhccCCC
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-----KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-----~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~ 190 (310)
+...--+|.+.+..|++++|++..+.++..-|.. ..+....|.+..-.|++++|......+.++...
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 3555667899999999999999999999998864 345667889999999999999999999988554
No 352
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=36.08 E-value=14 Score=21.32 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=13.2
Q ss_pred hhhhhhhhhhhhhhccCCCCCc
Q 021611 172 DRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 172 g~~~eA~~~f~~Al~l~P~d~~ 193 (310)
|+++.|.+.|+++++..|+++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~ 22 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVE 22 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChH
Confidence 3456666666666666665543
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=35.15 E-value=23 Score=26.94 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=39.3
Q ss_pred hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh-----hhcChHHHHHh
Q 021611 158 KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA-----QLYGVDEARNR 214 (310)
Q Consensus 158 ~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a-----~l~~~~eA~~~ 214 (310)
..-....|+=++...+.++|+..++++++..++.+. -|..++.. ..|++.+.++.
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~--rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED--RFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677898899999999999999999999887544 34444332 34666555554
No 354
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=34.65 E-value=8 Score=37.38 Aligned_cols=88 Identities=22% Similarity=0.249 Sum_probs=50.1
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhcccc--CcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--DPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.++....+|+.... +.| +|..-.||+.+....--.+.++...+-...- =.++.-++--+|-.+.++|+-+||.+.
T Consensus 311 DW~~I~aLYdaL~~--~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a 387 (415)
T COG4941 311 DWPAIDALYDALEQ--AAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA 387 (415)
T ss_pred ChHHHHHHHHHHHH--hCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence 34444445554433 222 2444456666665555555555555443333 112334455677788888888888888
Q ss_pred hhhhhccCCCCCc
Q 021611 181 FRIDVAQNPNDTE 193 (310)
Q Consensus 181 f~~Al~l~P~d~~ 193 (310)
|++++.+.++..+
T Consensus 388 ydrAi~La~~~ae 400 (415)
T COG4941 388 YDRAIALARNAAE 400 (415)
T ss_pred HHHHHHhcCChHH
Confidence 8888887776654
No 355
>PRK11619 lytic murein transglycosylase; Provisional
Probab=33.70 E-value=1.6e+02 Score=31.01 Aligned_cols=155 Identities=9% Similarity=-0.142 Sum_probs=79.2
Q ss_pred cccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc
Q 021611 140 VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG 219 (310)
Q Consensus 140 ~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~ 219 (310)
..+|...++++.....+.... -.+-.+-...++++.+...+...-.-..+.....+|.+.+...+|+.++|...+.++.
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~-e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLL-ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHhcccccCCcHHH-HHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 667777777765443222111 1122233477888887777777544333445556777776556888888888888764
Q ss_pred CCChhhHHHHHH-hhcCCCChHHHHHHhcCCCCcc---hhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHH
Q 021611 220 RDPRPVMREAYN-MFKGGGDPEKLVAAFSSGRENE---YFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMA 295 (310)
Q Consensus 220 ~d~~~~~~~a~~-l~~~~~~~e~al~~~~~~~~~d---~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~ 295 (310)
. .+..++.+.. .++....... ...+.+. .....+-....+...|+..+|...+..++... +..-..
T Consensus 374 ~-~~~fYG~LAa~~Lg~~~~~~~-----~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~----~~~~~~ 443 (644)
T PRK11619 374 Q-QRGFYPMVAAQRLGEEYPLKI-----DKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASR----SKTEQA 443 (644)
T ss_pred c-CCCcHHHHHHHHcCCCCCCCC-----CCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CHHHHH
Confidence 4 2333332211 1110000000 0000000 00112335556677788888888888877721 223334
Q ss_pred HHHHHhhccc
Q 021611 296 ALAKVHSLCR 305 (310)
Q Consensus 296 ~la~~~~~~~ 305 (310)
.++.+-..+|
T Consensus 444 ~la~~A~~~g 453 (644)
T PRK11619 444 QLARYAFNQQ 453 (644)
T ss_pred HHHHHHHHCC
Confidence 4555444444
No 356
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=33.07 E-value=21 Score=33.92 Aligned_cols=81 Identities=6% Similarity=-0.022 Sum_probs=62.6
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhh-----hhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD-----RFEEG 177 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg-----~~~eA 177 (310)
....-..++.+|+. .||++...+..+=......-+.++..+-+++++..+|++...| ++.+-+.++ .+++.
T Consensus 46 ~~E~klsilerAL~--~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW--~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 46 LAERKLSILERALK--HNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELW--REYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHH--HHHHHHHHHHhccCcHHHH
Confidence 45556788999998 7999998888887777777888888999999999999987766 444445554 36677
Q ss_pred hhhhhhhhcc
Q 021611 178 AEQFRIDVAQ 187 (310)
Q Consensus 178 ~~~f~~Al~l 187 (310)
.+.|.+++..
T Consensus 122 ~~~y~~~l~~ 131 (321)
T PF08424_consen 122 RDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHH
Confidence 7777777663
No 357
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=32.52 E-value=24 Score=26.48 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=17.9
Q ss_pred HHhhccchhhhhhhhhhhhhhhhhh-------ccCCCCC
Q 021611 161 LWQRGLSLYYLDRFEEGAEQFRIDV-------AQNPNDT 192 (310)
Q Consensus 161 ~~~~G~a~~~lg~~~eA~~~f~~Al-------~l~P~d~ 192 (310)
+..++.-+-..|++++|+.+|++++ ...|+++
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 3344455555566666666665554 4566654
No 358
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=32.40 E-value=18 Score=27.15 Aligned_cols=15 Identities=13% Similarity=0.242 Sum_probs=6.6
Q ss_pred hhhhhhhhhhhhhhh
Q 021611 171 LDRFEEGAEQFRIDV 185 (310)
Q Consensus 171 lg~~~eA~~~f~~Al 185 (310)
.|+|++|+..|..++
T Consensus 19 ~g~y~eA~~~Y~~ai 33 (76)
T cd02681 19 EGRYSEAVFYYKEAA 33 (76)
T ss_pred ccCHHHHHHHHHHHH
Confidence 344444444444443
No 359
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=32.21 E-value=1.1e+02 Score=32.98 Aligned_cols=152 Identities=14% Similarity=0.064 Sum_probs=79.4
Q ss_pred HHHHHhhhhheeccccccchhhh------hhcccc-----------------Ccch-hhHHHhhccchhhhhhhhhhhhh
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEF------DKAIEL-----------------DPRQ-KAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f------~kAl~l-----------------~P~~-~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
..|+..+.-+-..|+|.||...| ++||++ .|+. ...+...|.-+...|+..+|.+.
T Consensus 825 ~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 825 SLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred HHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHH
Confidence 55666666666677777766654 233332 1222 34455677778888888888888
Q ss_pred hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCC----ChhhH-H------HHHHhhcCCCChHHH-------
Q 021611 181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRD----PRPVM-R------EAYNMFKGGGDPEKL------- 242 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d----~~~~~-~------~a~~l~~~~~~~e~a------- 242 (310)
|-++-..... .+. ....+-+++|......-+-. ....+ . .+..+++..|-.+++
T Consensus 905 flea~d~kaa-----vnm---yk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~ 976 (1636)
T KOG3616|consen 905 FLEAGDFKAA-----VNM---YKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADN 976 (1636)
T ss_pred HHhhhhHHHH-----HHH---hhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcc
Confidence 8776432210 000 00112234443332211000 00000 0 111233333333332
Q ss_pred ------HHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 243 ------VAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 243 ------l~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
....+..........|+-++..++..|++++|-+||-.|+++
T Consensus 977 ~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 977 CAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred cchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 222222233334456777888999999999999999999985
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=32.20 E-value=52 Score=33.62 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=22.4
Q ss_pred cccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 138 GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 138 g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
|+.-.|-.-...+++..|.+|....-++.+...+|+|+.|..+..
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s 347 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDIS 347 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhh
Confidence 444444444444555555555544455555555555555554443
No 361
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=32.03 E-value=49 Score=31.14 Aligned_cols=60 Identities=15% Similarity=0.016 Sum_probs=46.4
Q ss_pred chhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh--hhhcChHHHHHhHHH
Q 021611 156 RQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE--AQLYGVDEARNRFLE 217 (310)
Q Consensus 156 ~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~--a~l~~~~eA~~~l~~ 217 (310)
.+..++..+...+...|+++.+++.+++.+.++|-+-. .|..+.. .+.|+...|+..+.+
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~--~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP--AYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH--HHHHHHHHHHHcCCchHHHHHHHH
Confidence 34567788999999999999999999999999997654 4544433 366777788776654
No 362
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=32.01 E-value=65 Score=32.30 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=49.6
Q ss_pred hhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHh
Q 021611 169 YYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAF 246 (310)
Q Consensus 169 ~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~ 246 (310)
.++|+++.|.+. |-+++ ++ .-|..++.. ..|+++-|..++.+... +..+..++...|+.+...+..
T Consensus 329 l~lg~L~~A~~~---a~~~~--~~--~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 329 LQLGNLDIALEI---AKELD--DP--EKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHCT-HHHHHHH---CCCCS--TH--HHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHH
T ss_pred HhcCCHHHHHHH---HHhcC--cH--HHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHH
Confidence 556666666655 22222 23 368888766 56889999999887543 122223444455655544443
Q ss_pred cCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 247 SSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 247 ~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
........... .-.++...|+.++-.+.+.++-.
T Consensus 397 ~~a~~~~~~n~---af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 397 KIAEERGDINI---AFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHHHTT-HHH---HHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHccCHHH---HHHHHHHcCCHHHHHHHHHHcCC
Confidence 32111111111 11234446777777777666544
No 363
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.80 E-value=40 Score=33.50 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=44.0
Q ss_pred hheeccccccchhhhhhcccc--Cc--chhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611 133 LLFRQGDVVGSVAEFDKAIEL--DP--RQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 133 ~~~~~g~~~eAl~~f~kAl~l--~P--~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~ 192 (310)
.|+.-+-|+.|-....|+.-- .. ....+.|..|.+...+++|..|.++|-+|+...|++.
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 344445566666666555421 11 3456778899999999999999999999999999853
No 364
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.44 E-value=2.6e+02 Score=30.14 Aligned_cols=170 Identities=15% Similarity=0.053 Sum_probs=94.1
Q ss_pred eccccccchhhhhhccccC--cc----hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccc-eeeeehhhhhcCh
Q 021611 136 RQGDVVGSVAEFDKAIELD--PR----QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEES-IWCFLCEAQLYGV 208 (310)
Q Consensus 136 ~~g~~~eAl~~f~kAl~l~--P~----~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~-~~~~l~~a~l~~~ 208 (310)
..|+..+|.+...--+--+ |. ...+++.+|+++..-|+- ..+.+..-++-..++.-.+ ...+++++.+|..
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa 446 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA 446 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence 3577777766655444332 11 245788899888777665 7777777777665544221 3345666666653
Q ss_pred -HHHHHhHHHhcCCChhhHHHH--HH---hhcCCCChHH---HHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHH
Q 021611 209 -DEARNRFLEVGRDPRPVMREA--YN---MFKGGGDPEK---LVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHIL 279 (310)
Q Consensus 209 -~eA~~~l~~~~~d~~~~~~~a--~~---l~~~~~~~e~---al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~ 279 (310)
.+-.+.++++....+.+..++ +. +..+....+. +...... -+.+.-..-+..|..+.-.|+.++|..+.+
T Consensus 447 ~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~E-TQHeki~RGl~vGiaL~~ygrqe~Ad~lI~ 525 (929)
T KOG2062|consen 447 NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQE-TQHEKIIRGLAVGIALVVYGRQEDADPLIK 525 (929)
T ss_pred cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhh-hhHHHHHHHHHHhHHHHHhhhhhhhHHHHH
Confidence 344444554433222222222 11 1222333332 2222221 122222223347778888899999999999
Q ss_pred HhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 280 AACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 280 kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
+.+..+.+.-.-.=+++++.++++-||=+
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~GTgnnk 554 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVGTGNNK 554 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhccCchh
Confidence 99985433311244678899998888744
No 365
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=30.09 E-value=54 Score=33.20 Aligned_cols=169 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred hhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh-----
Q 021611 110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID----- 184 (310)
Q Consensus 110 ~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A----- 184 (310)
++++++. .-|-.++.|+.-..-.+..++-+.|+....++++..|. .++.++..+..-.|-++--.+|+++
T Consensus 290 ~~~q~~~--y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 290 IHNQILD--YFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred HHHHHHH--HhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH
Q ss_pred -----------------------hccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcC----CChhhHHHHHHhhcC
Q 021611 185 -----------------------VAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGR----DPRPVMREAYNMFKG 235 (310)
Q Consensus 185 -----------------------l~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~----d~~~~~~~a~~l~~~ 235 (310)
+-+...+....+|+-+..+ +..+.+.|++.|.+..+ .+.....-++.-+..
T Consensus 365 r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~ 444 (660)
T COG5107 365 RKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA 444 (660)
T ss_pred HHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh
Q ss_pred CCChHHHHHHhcCCCC--cchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 236 GGDPEKLVAAFSSGRE--NEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 236 ~~~~e~al~~~~~~~~--~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
.+++.-+...++.+.. +|...-..---..+...|+-+.|+..|+++++
T Consensus 445 ~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 445 TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
No 366
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.31 E-value=2e+02 Score=31.32 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=26.4
Q ss_pred Cchh-HHHHHHHhhhhheeccccccchhhhhhcccc-Ccc
Q 021611 119 NNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-DPR 156 (310)
Q Consensus 119 ~~P~-~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l-~P~ 156 (310)
.+|+ -...+...|.-++.+|++++|...|=+.|.. +|.
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s 401 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS 401 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH
Confidence 3443 3366677788888888888888888887753 454
No 367
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=29.27 E-value=85 Score=33.55 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=19.6
Q ss_pred hccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 149 KAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 149 kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
+-|+-+|. +..|..++..-...-.++-|...|-++
T Consensus 684 qfiEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 684 QFIEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred HHHhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 33445553 555655665555555666666666554
No 368
>PF12854 PPR_1: PPR repeat
Probab=28.31 E-value=25 Score=21.68 Aligned_cols=25 Identities=20% Similarity=0.044 Sum_probs=14.2
Q ss_pred HHHHHhhhhheeccccccchhhhhh
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDK 149 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~k 149 (310)
..|..+=..+.+.|+.++|++.|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3444555555666666666665553
No 369
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=28.30 E-value=22 Score=26.60 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=7.7
Q ss_pred hhhhhhhhhhccCCCC
Q 021611 176 EGAEQFRIDVAQNPND 191 (310)
Q Consensus 176 eA~~~f~~Al~l~P~d 191 (310)
+|++.|..+++..||.
T Consensus 31 ~aie~l~~~lk~e~d~ 46 (77)
T cd02683 31 EGIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHHhhCCCH
Confidence 3444444445556543
No 370
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.15 E-value=2.3e+02 Score=22.77 Aligned_cols=65 Identities=23% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCChHHHHHHhc--------CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHH
Q 021611 227 REAYNMFKGGGDPEKLVAAFS--------SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYM 294 (310)
Q Consensus 227 ~~a~~l~~~~~~~e~al~~~~--------~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~ 294 (310)
..+|.+|++....|+-.+.++ .+.+.++.+ |..+|++|...|+-|.|.+-|+.=-. -.+.|..+|
T Consensus 37 ~tvyEy~K~~es~e~Q~~~le~~~ek~~ak~~~vpPG~-HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fm 109 (121)
T COG4259 37 DTVYEYFKGDESKEAQTAALEKYLEKIGAKNGAVPPGY-HAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFM 109 (121)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCCCCcH-HHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHH
No 371
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=28.05 E-value=1.2e+02 Score=30.66 Aligned_cols=139 Identities=13% Similarity=0.101 Sum_probs=78.7
Q ss_pred HHHHhhhhheeccccccchhhhhhccccCcch-----hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-----KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL 200 (310)
Q Consensus 126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-----~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l 200 (310)
.....|-++..++++.+|...|.|...-.-+. .+.+-+|-+--+.+++.+.........-+..|+.+......++
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 34566888888888888888888876554332 2445555566677777777777777777777754432222222
Q ss_pred hhhhhcChHHHHHhHHH----hcCCChhhHH-HHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHH
Q 021611 201 CEAQLYGVDEARNRFLE----VGRDPRPVMR-EAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAK 275 (310)
Q Consensus 201 ~~a~l~~~~eA~~~l~~----~~~d~~~~~~-~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~ 275 (310)
..-+.+.+.+|.+.+.. +.....+.+. +.+.++ +++......+-++-..|++++++
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~-------------------~df~l~~i~a~sLIe~g~f~EgR 148 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLF-------------------SDFFLDEIEAHSLIETGRFSEGR 148 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHh-------------------hHHHHHHHHHHHHHhcCCcchHH
Confidence 22256667777666542 1111111110 011000 11111122445677788999998
Q ss_pred HHHHHhhc
Q 021611 276 LHILAACE 283 (310)
Q Consensus 276 ~~~~kAl~ 283 (310)
..+++.+.
T Consensus 149 ~iLn~i~~ 156 (549)
T PF07079_consen 149 AILNRIIE 156 (549)
T ss_pred HHHHHHHH
Confidence 88888776
No 372
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=27.86 E-value=60 Score=34.57 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=67.5
Q ss_pred chhhhhhhhcCC--CCchhHHHHHHHhhhhh--eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 106 SVSGIWDALTGG--NNNSREAVVAIRRGMLL--FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 106 ~a~~~~~~ai~~--~~~P~~~~a~~~rG~~~--~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
++.--|+.++-. .-+++.+....++..++ ...|++..++.+.+-|+...|....+.+-|+..|..+++++-|+++.
T Consensus 71 ~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl 150 (748)
T KOG4151|consen 71 GAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDL 150 (748)
T ss_pred ccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 343445555441 22335555555555544 44789999999999999999999999999999999999999999998
Q ss_pred hhhhccCCCCCc
Q 021611 182 RIDVAQNPNDTE 193 (310)
Q Consensus 182 ~~Al~l~P~d~~ 193 (310)
.-.....|+.++
T Consensus 151 ~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 151 RIVEKMDPSNVS 162 (748)
T ss_pred HHHhcCCCCcch
Confidence 888888998754
No 373
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.79 E-value=1.8e+02 Score=35.15 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=62.5
Q ss_pred chhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND 191 (310)
Q Consensus 120 ~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d 191 (310)
+..-.+.|.+.+.+....|+++.|-...-+|-+..+ +.++..++..+...|+-..|+..+++.++.+-.+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 445679999999999999999999999999999985 5899999999999999999999999999876433
No 374
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=27.47 E-value=66 Score=19.04 Aligned_cols=27 Identities=30% Similarity=0.261 Sum_probs=19.1
Q ss_pred hhhhhhhhhhh----ccchhhHHHHHHHhhc
Q 021611 257 ASLYAGLFYES----QKKADAAKLHILAACE 283 (310)
Q Consensus 257 a~~~lG~~~~~----~G~~d~A~~~~~kAl~ 283 (310)
+.+.+|.+|.. ..+.++|+.+|++|.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 34556665542 2388999999999987
No 375
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=26.41 E-value=19 Score=29.57 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=25.3
Q ss_pred HHHHhhhhheeccccccchhhhhhccccCcc
Q 021611 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (310)
Q Consensus 126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~ 156 (310)
-...+|..++..|++++|+.+|-+||..-|+
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3457888888899999999999999998875
No 376
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=26.41 E-value=23 Score=26.43 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=10.4
Q ss_pred hhhhhhhhhhhhhhhc
Q 021611 171 LDRFEEGAEQFRIDVA 186 (310)
Q Consensus 171 lg~~~eA~~~f~~Al~ 186 (310)
.|+|++|...|..++.
T Consensus 19 ~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 19 EGDYEAAFEFYRAGVD 34 (75)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 3677777766666654
No 377
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=25.82 E-value=73 Score=19.32 Aligned_cols=14 Identities=21% Similarity=-0.012 Sum_probs=12.5
Q ss_pred chhhHHHHHHHhhc
Q 021611 270 KADAAKLHILAACE 283 (310)
Q Consensus 270 ~~d~A~~~~~kAl~ 283 (310)
+.++|+.+|++|.+
T Consensus 23 d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 23 DYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHH
Confidence 68999999999987
No 378
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=24.54 E-value=73 Score=23.17 Aligned_cols=24 Identities=17% Similarity=-0.044 Sum_probs=19.3
Q ss_pred hhhhhhhhccchhhHHHHHHHhhc
Q 021611 260 YAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 260 ~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
..|.-....|++++|+.+|.+|++
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677778899999988888887
No 379
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=24.31 E-value=2.5e+02 Score=28.20 Aligned_cols=70 Identities=13% Similarity=-0.031 Sum_probs=39.2
Q ss_pred CCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCC------CCCChHHHHHHHHHhhcccCCc
Q 021611 236 GGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPY------GQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 236 ~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~------~~~s~~~~~~la~~~~~~~~~~ 308 (310)
.|+.+.|.+.+....++. -|-.+|.....+|+++-|+.+|.++-...- -..+.+-+..|+..-...|+|+
T Consensus 331 lg~L~~A~~~a~~~~~~~---~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n 406 (443)
T PF04053_consen 331 LGNLDIALEIAKELDDPE---KWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDIN 406 (443)
T ss_dssp CT-HHHHHHHCCCCSTHH---HHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HH
T ss_pred cCCHHHHHHHHHhcCcHH---HHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHH
Confidence 345555555554333322 333688899999999999999998766210 0122355555565555555553
No 380
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=23.92 E-value=78 Score=35.68 Aligned_cols=67 Identities=13% Similarity=-0.002 Sum_probs=53.6
Q ss_pred hHHHHHHHhhhhheeccccccchh------hhh-hccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccC
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVA------EFD-KAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~------~f~-kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~ 188 (310)
..+.-....|......|.+.+|.+ .++ +--.+.|.....+..++.++.++|++++|+..=+++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~ 1003 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIIS 1003 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeee
Confidence 455666788888999999998888 444 3444578888999999999999999999999888876553
No 381
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=23.43 E-value=2.1e+02 Score=27.82 Aligned_cols=123 Identities=7% Similarity=-0.036 Sum_probs=74.8
Q ss_pred cccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc-----CCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhh
Q 021611 151 IELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ-----NPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPV 225 (310)
Q Consensus 151 l~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l-----~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~ 225 (310)
++.+|=+...+.+++.++...|+++.|.+..++|+=. -|.+.........+..++. -.....++.
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~----------~~~~eNR~f 102 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLD----------YRRPENRQF 102 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccC----------CccccchHH
Confidence 4667889999999999999999999999999999642 2322110000011111110 001122232
Q ss_pred HHHHH---HhhcCCCChHHHHHHhc----CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 226 MREAY---NMFKGGGDPEKLVAAFS----SGRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 226 ~~~a~---~l~~~~~~~e~al~~~~----~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
+..++ ..+...|...-|++.++ ..+..|+..+.+++-.+....++++-=++.++....
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 22222 23455677777777665 334446677777787888888888877777776555
No 382
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=22.92 E-value=2.4e+02 Score=30.83 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=68.6
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcc---------hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR---------QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~---------~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~ 192 (310)
++|......+.....+.+++||....+++-.--|. ....---+|.+....|++++|++.-+.+++.=|.+.
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 35666777788888999999999988886555443 122233488999999999999999999999888764
Q ss_pred c---cceeeeehhh--hhcChHHHHHhHHHh
Q 021611 193 E---ESIWCFLCEA--QLYGVDEARNRFLEV 218 (310)
Q Consensus 193 ~---~~~~~~l~~a--~l~~~~eA~~~l~~~ 218 (310)
. ......++.+ -.|++++|+......
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQA 523 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHH
Confidence 2 1111222333 368888988876553
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=22.09 E-value=1.2e+02 Score=29.67 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=39.1
Q ss_pred HHHHHhhhhheeccccccchhhhhhcccc-Ccchh-hHHH--hhccchhhhhhhhhhhhhhhhhhcc
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIEL-DPRQK-AYLW--QRGLSLYYLDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l-~P~~~-~a~~--~~G~a~~~lg~~~eA~~~f~~Al~l 187 (310)
.-...++..++..++|..|.+.|+...+. .++.. ..+. -.|.-+...-++++|.+.+++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556667777778888888887777764 33322 2222 2444445556677777777776654
No 384
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=21.79 E-value=52 Score=27.02 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=25.5
Q ss_pred HhhccchhhhhhhhhhhhhhhhhhccCCC
Q 021611 162 WQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190 (310)
Q Consensus 162 ~~~G~a~~~lg~~~eA~~~f~~Al~l~P~ 190 (310)
..+|..+...|++++|+.+|-+|+.+-|+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 37999999999999999999999999885
No 385
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=21.62 E-value=70 Score=29.54 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=56.6
Q ss_pred chhhhhhhhcCC--CCchhHH----HHHHHhhhhheecc-ccccchhhhhhcccc----Cc------c----hhhHHHhh
Q 021611 106 SVSGIWDALTGG--NNNSREA----VVAIRRGMLLFRQG-DVVGSVAEFDKAIEL----DP------R----QKAYLWQR 164 (310)
Q Consensus 106 ~a~~~~~~ai~~--~~~P~~~----~a~~~rG~~~~~~g-~~~eAl~~f~kAl~l----~P------~----~~~a~~~~ 164 (310)
-|.-.+.++-.- ..+|+.. ..+|+-|.-....+ ++++|+.++++|+++ .+ + ....+..+
T Consensus 11 ~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~L 90 (278)
T PF08631_consen 11 LAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLL 90 (278)
T ss_pred HHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHH
Confidence 344455544210 2566544 78999999999999 999999999999988 32 1 12345567
Q ss_pred ccchhhhhhhhhh---hhhhhhhhccCCCCCc
Q 021611 165 GLSLYYLDRFEEG---AEQFRIDVAQNPNDTE 193 (310)
Q Consensus 165 G~a~~~lg~~~eA---~~~f~~Al~l~P~d~~ 193 (310)
+.++...+.++.. ....+.+-.--|+.+.
T Consensus 91 a~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~ 122 (278)
T PF08631_consen 91 ANAYLEWDTYESVEKALNALRLLESEYGNKPE 122 (278)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHhCCCCcH
Confidence 7777777766544 3344444444565554
No 386
>PF04875 DUF645: Protein of unknown function, DUF645; InterPro: IPR006959 This family contains uncharacterised proteins from Vibrio cholerae.
Probab=21.08 E-value=29 Score=24.66 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=9.9
Q ss_pred hhhhhhhhhheeh
Q 021611 28 HQLYYYKFCIFFQ 40 (310)
Q Consensus 28 ~~~~~~~~~~~~~ 40 (310)
.|+.||++|||-.
T Consensus 7 ~kf~FtKg~IIA~ 19 (59)
T PF04875_consen 7 GKFGFTKGCIIAV 19 (59)
T ss_pred cccccccceEEEE
Confidence 3588999998854
No 387
>PRK11619 lytic murein transglycosylase; Provisional
Probab=21.05 E-value=3.8e+02 Score=28.26 Aligned_cols=62 Identities=13% Similarity=0.023 Sum_probs=40.2
Q ss_pred CCChHHHHHHhcCCC--CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhc
Q 021611 236 GGDPEKLVAAFSSGR--ENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSL 303 (310)
Q Consensus 236 ~~~~e~al~~~~~~~--~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~ 303 (310)
.++.+.+...+...+ ........||+|..+..+|+.++|..+|+++.. . + +|+--||.-.++
T Consensus 325 ~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~-~---~--~fYG~LAa~~Lg 388 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ-Q---R--GFYPMVAAQRLG 388 (644)
T ss_pred ccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-C---C--CcHHHHHHHHcC
Confidence 445555544443211 123455788999999999999999999999865 1 2 465566555443
No 388
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=20.67 E-value=38 Score=31.32 Aligned_cols=53 Identities=25% Similarity=0.351 Sum_probs=44.0
Q ss_pred eeccccccchhhhhhcccc----Ccch----hhHHHhhccchhhhh-hhhhhhhhhhhhhcc
Q 021611 135 FRQGDVVGSVAEFDKAIEL----DPRQ----KAYLWQRGLSLYYLD-RFEEGAEQFRIDVAQ 187 (310)
Q Consensus 135 ~~~g~~~eAl~~f~kAl~l----~P~~----~~a~~~~G~a~~~lg-~~~eA~~~f~~Al~l 187 (310)
.++||++.|...+.|+=.+ +|+. ...+|+.|...+..+ ++++|+..++++.++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4679999999999886554 4554 456789999999999 999999999999887
No 389
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.35 E-value=53 Score=33.65 Aligned_cols=70 Identities=11% Similarity=0.155 Sum_probs=60.1
Q ss_pred CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch----hhHHHhhccchhhhhhhhhhhhhhhhhhccCC
Q 021611 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ----KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189 (310)
Q Consensus 118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~----~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P 189 (310)
..-|+++.-.++.+..+...|+.+.|+..|+..++ +.. .-.+|.+|.++..+.+|..|...+.....++.
T Consensus 261 ~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd 334 (546)
T KOG3783|consen 261 KRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD 334 (546)
T ss_pred HhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 47788899999999999999999999999999999 443 34577899999999999999999998877764
No 390
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=20.20 E-value=46 Score=25.20 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=18.4
Q ss_pred ccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 139 DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 139 ~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
-|+.|.+..++||+.+ ..|+.++|+..|++++.
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence 3455555555555544 44566666666666654
Done!