Query 021611
Match_columns 310
No_of_seqs 214 out of 1653
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 06:40:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 99.8 1E-21 3.5E-26 172.3 6.3 185 121-308 2-202 (217)
2 2pl2_A Hypothetical conserved 99.8 4E-21 1.4E-25 168.5 3.5 181 101-283 18-213 (217)
3 2h6f_A Protein farnesyltransfe 99.8 3.7E-20 1.3E-24 177.9 4.4 199 102-305 111-323 (382)
4 1w3b_A UDP-N-acetylglucosamine 99.8 3.7E-19 1.3E-23 166.3 10.8 200 103-306 184-388 (388)
5 3vtx_A MAMA; tetratricopeptide 99.8 1.2E-19 4.3E-24 152.5 5.9 164 122-285 3-171 (184)
6 4eqf_A PEX5-related protein; a 99.8 8.7E-20 3E-24 169.0 4.0 205 100-308 77-298 (365)
7 1w3b_A UDP-N-acetylglucosamine 99.8 2.8E-19 9.7E-24 167.1 6.8 201 103-307 116-321 (388)
8 2h6f_A Protein farnesyltransfe 99.8 3E-19 1E-23 171.6 5.8 188 114-305 89-288 (382)
9 4gyw_A UDP-N-acetylglucosamine 99.8 4.1E-19 1.4E-23 183.8 5.8 166 119-284 4-174 (723)
10 3hym_B Cell division cycle pro 99.7 6.1E-19 2.1E-23 158.9 5.7 111 105-217 73-184 (330)
11 1fch_A Peroxisomal targeting s 99.7 2.2E-18 7.4E-23 158.6 7.6 204 101-308 77-302 (368)
12 4gco_A Protein STI-1; structur 99.7 2.7E-18 9.4E-23 138.8 5.6 117 119-300 8-124 (126)
13 4i17_A Hypothetical protein; T 99.7 6.3E-18 2.1E-22 147.1 8.2 180 123-304 6-227 (228)
14 2q7f_A YRRB protein; TPR, prot 99.7 2.5E-18 8.5E-23 148.8 5.5 203 99-305 34-241 (243)
15 4eqf_A PEX5-related protein; a 99.7 1.5E-18 5E-23 160.7 3.3 203 101-307 112-343 (365)
16 3hym_B Cell division cycle pro 99.7 6.5E-18 2.2E-22 152.1 7.4 200 103-306 106-320 (330)
17 3cv0_A Peroxisome targeting si 99.7 7.1E-18 2.4E-22 151.7 7.5 203 102-308 35-257 (327)
18 2gw1_A Mitochondrial precursor 99.7 5.3E-18 1.8E-22 162.2 5.9 201 103-308 252-466 (514)
19 4abn_A Tetratricopeptide repea 99.7 4.4E-18 1.5E-22 166.7 4.0 196 105-307 85-308 (474)
20 3urz_A Uncharacterized protein 99.7 1.4E-17 4.7E-22 144.9 5.9 151 102-285 18-187 (208)
21 3fp2_A TPR repeat-containing p 99.7 2.2E-17 7.6E-22 159.4 7.4 200 104-308 259-479 (537)
22 3ieg_A DNAJ homolog subfamily 99.7 1.7E-17 5.9E-22 150.4 6.2 204 101-308 16-251 (359)
23 2ho1_A Type 4 fimbrial biogene 99.7 6.1E-17 2.1E-21 141.6 9.2 189 118-308 30-226 (252)
24 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.3E-18 2.2E-22 148.9 2.8 181 104-285 21-245 (275)
25 2y4t_A DNAJ homolog subfamily 99.7 3.5E-17 1.2E-21 154.8 6.2 200 105-308 9-228 (450)
26 2vq2_A PILW, putative fimbrial 99.7 4.9E-17 1.7E-21 138.4 6.5 188 119-307 3-198 (225)
27 3u4t_A TPR repeat-containing p 99.7 1.6E-17 5.5E-22 146.6 3.2 203 102-308 17-238 (272)
28 3gyz_A Chaperone protein IPGC; 99.7 1.7E-17 5.7E-22 139.4 3.2 110 107-218 21-130 (151)
29 1fch_A Peroxisomal targeting s 99.7 2.1E-17 7.1E-22 151.9 4.1 205 101-308 111-347 (368)
30 2q7f_A YRRB protein; TPR, prot 99.7 9.2E-17 3.1E-21 138.9 7.8 184 123-308 22-210 (243)
31 3cv0_A Peroxisome targeting si 99.7 3.9E-17 1.3E-21 146.8 5.1 205 102-308 69-303 (327)
32 3ieg_A DNAJ homolog subfamily 99.7 8.3E-17 2.8E-21 145.9 7.2 201 101-305 133-354 (359)
33 2y4t_A DNAJ homolog subfamily 99.7 2.9E-17 1E-21 155.3 4.4 204 101-308 39-274 (450)
34 2xpi_A Anaphase-promoting comp 99.7 1.1E-16 3.7E-21 157.2 7.7 203 102-308 353-567 (597)
35 3uq3_A Heat shock protein STI1 99.6 3.4E-17 1.2E-21 142.3 3.5 194 102-308 19-224 (258)
36 2ond_A Cleavage stimulation fa 99.6 1.1E-16 3.6E-21 147.0 7.0 200 105-307 33-257 (308)
37 2pzi_A Probable serine/threoni 99.6 2E-17 6.8E-22 169.3 1.7 177 103-282 406-596 (681)
38 3qky_A Outer membrane assembly 99.6 3.4E-16 1.2E-20 139.3 7.8 188 119-306 10-247 (261)
39 4ga2_A E3 SUMO-protein ligase 99.6 6.4E-17 2.2E-21 134.1 2.7 146 130-306 3-149 (150)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-16 5.3E-21 140.0 5.2 157 126-283 7-172 (275)
41 3fp2_A TPR repeat-containing p 99.6 2.2E-16 7.4E-21 152.4 6.4 89 101-192 38-126 (537)
42 2xpi_A Anaphase-promoting comp 99.6 1.6E-16 5.5E-21 155.9 5.5 200 99-302 384-595 (597)
43 2ho1_A Type 4 fimbrial biogene 99.6 4.2E-16 1.4E-20 136.2 7.4 181 102-284 51-238 (252)
44 3u4t_A TPR repeat-containing p 99.6 1.6E-15 5.4E-20 133.8 9.8 181 123-306 2-191 (272)
45 3vtx_A MAMA; tetratricopeptide 99.6 1.4E-16 4.6E-21 133.8 1.5 163 100-264 17-182 (184)
46 4ga2_A E3 SUMO-protein ligase 99.6 2.3E-16 7.7E-21 130.7 2.6 113 101-215 10-122 (150)
47 4abn_A Tetratricopeptide repea 99.6 2E-16 6.7E-21 155.0 2.5 176 103-281 117-318 (474)
48 3uq3_A Heat shock protein STI1 99.6 1.5E-16 5.3E-21 138.1 0.7 179 121-308 2-190 (258)
49 2gw1_A Mitochondrial precursor 99.6 1.4E-15 4.7E-20 145.5 7.1 192 103-298 285-490 (514)
50 4gcn_A Protein STI-1; structur 99.6 5.8E-16 2E-20 124.9 3.7 122 120-300 4-125 (127)
51 2r5s_A Uncharacterized protein 99.6 9.1E-16 3.1E-20 129.3 4.2 73 120-193 2-74 (176)
52 4gyw_A UDP-N-acetylglucosamine 99.6 4.1E-16 1.4E-20 161.3 2.4 146 99-246 20-168 (723)
53 3as5_A MAMA; tetratricopeptide 99.6 3.5E-15 1.2E-19 122.5 6.9 163 122-284 6-173 (186)
54 4gco_A Protein STI-1; structur 99.6 1.6E-16 5.6E-21 128.3 -1.1 94 99-194 24-117 (126)
55 1ouv_A Conserved hypothetical 99.5 3.5E-15 1.2E-19 133.0 6.5 195 102-308 20-239 (273)
56 2vgx_A Chaperone SYCD; alterna 99.5 1.3E-15 4.5E-20 126.1 3.1 109 108-218 7-115 (148)
57 2vq2_A PILW, putative fimbrial 99.5 2.4E-15 8.1E-20 127.8 4.2 180 102-283 22-210 (225)
58 1ouv_A Conserved hypothetical 99.5 7.5E-15 2.6E-19 130.9 6.9 186 103-300 57-263 (273)
59 3qou_A Protein YBBN; thioredox 99.5 2.7E-15 9.1E-20 137.1 3.7 165 119-283 112-283 (287)
60 3mkr_A Coatomer subunit epsilo 99.5 9.3E-15 3.2E-19 134.2 7.0 173 105-284 82-264 (291)
61 2xcb_A PCRH, regulatory protei 99.5 2.5E-15 8.4E-20 122.5 2.8 108 109-218 5-112 (142)
62 4g1t_A Interferon-induced prot 99.5 5.3E-15 1.8E-19 141.1 3.5 180 104-285 229-460 (472)
63 2vsy_A XCC0866; transferase, g 99.5 4.4E-15 1.5E-19 147.3 3.1 152 103-285 4-158 (568)
64 3gyz_A Chaperone protein IPGC; 99.5 9E-16 3.1E-20 128.8 -2.1 125 62-192 14-138 (151)
65 3urz_A Uncharacterized protein 99.5 3.3E-15 1.1E-19 129.7 1.3 118 99-219 65-184 (208)
66 3mkr_A Coatomer subunit epsilo 99.5 1.5E-14 5.1E-19 132.9 5.2 183 119-308 60-251 (291)
67 2yhc_A BAMD, UPF0169 lipoprote 99.5 2.7E-14 9.3E-19 125.0 6.6 70 124-193 4-76 (225)
68 1p5q_A FKBP52, FK506-binding p 99.5 4.9E-15 1.7E-19 138.8 1.9 150 103-283 128-293 (336)
69 4g1t_A Interferon-induced prot 99.5 7.6E-15 2.6E-19 140.0 3.2 200 103-304 66-294 (472)
70 2ond_A Cleavage stimulation fa 99.5 3.4E-14 1.2E-18 130.2 7.4 178 104-284 80-270 (308)
71 3sz7_A HSC70 cochaperone (SGT) 99.5 2.6E-14 8.9E-19 118.6 4.8 99 119-217 6-104 (164)
72 3dra_A Protein farnesyltransfe 99.5 3.1E-14 1E-18 133.1 5.1 201 103-305 48-272 (306)
73 3upv_A Heat shock protein STI1 99.5 1.2E-14 4.2E-19 115.0 2.0 98 121-218 1-98 (126)
74 2lni_A Stress-induced-phosphop 99.4 6E-14 2.1E-18 109.8 5.5 123 119-306 11-133 (133)
75 2hr2_A Hypothetical protein; a 99.4 3.7E-15 1.3E-19 126.8 -1.6 91 101-193 24-137 (159)
76 4i17_A Hypothetical protein; T 99.4 6.8E-15 2.3E-19 127.7 -0.1 120 102-223 21-149 (228)
77 3edt_B KLC 2, kinesin light ch 99.4 1.2E-14 4.2E-19 127.1 1.5 99 119-217 38-152 (283)
78 2pzi_A Probable serine/threoni 99.4 1.4E-14 4.8E-19 148.2 2.0 183 118-306 388-583 (681)
79 3nf1_A KLC 1, kinesin light ch 99.4 1.2E-14 4.1E-19 129.5 0.7 166 118-283 21-223 (311)
80 4f3v_A ESX-1 secretion system 99.4 3E-14 1E-18 131.8 3.0 190 103-298 21-248 (282)
81 3qky_A Outer membrane assembly 99.4 4E-14 1.4E-18 125.8 3.4 174 101-276 28-253 (261)
82 2vyi_A SGTA protein; chaperone 99.4 1.2E-13 4.1E-18 107.0 5.7 124 119-307 7-130 (131)
83 1p5q_A FKBP52, FK506-binding p 99.4 1.4E-14 4.8E-19 135.6 0.3 172 114-307 95-280 (336)
84 1hh8_A P67PHOX, NCF-2, neutrop 99.4 3.5E-13 1.2E-17 115.0 8.5 149 121-286 3-152 (213)
85 1zu2_A Mitochondrial import re 99.4 1.7E-14 6E-19 122.5 0.1 95 97-193 11-126 (158)
86 2c2l_A CHIP, carboxy terminus 99.4 3.6E-14 1.2E-18 129.4 2.1 177 101-284 17-199 (281)
87 1dce_A Protein (RAB geranylger 99.4 8.5E-14 2.9E-18 140.1 4.4 171 103-306 44-241 (567)
88 4a1s_A PINS, partner of inscut 99.4 6.7E-15 2.3E-19 137.7 -3.6 202 102-307 62-319 (411)
89 1hxi_A PEX5, peroxisome target 99.4 3.4E-14 1.2E-18 113.6 0.5 88 103-192 32-119 (121)
90 2ooe_A Cleavage stimulation fa 99.4 2.7E-13 9.3E-18 133.1 6.8 199 106-307 256-479 (530)
91 2hr2_A Hypothetical protein; a 99.4 3.8E-14 1.3E-18 120.6 0.2 96 123-218 10-128 (159)
92 2xcb_A PCRH, regulatory protei 99.4 1.8E-14 6.1E-19 117.3 -2.1 92 100-193 30-121 (142)
93 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 8.1E-14 2.8E-18 136.0 2.1 144 103-277 249-407 (457)
94 2c2l_A CHIP, carboxy terminus 99.4 4E-14 1.4E-18 129.1 -0.1 161 121-285 1-165 (281)
95 3sf4_A G-protein-signaling mod 99.4 2.2E-14 7.6E-19 132.6 -1.9 86 103-190 24-119 (406)
96 3sz7_A HSC70 cochaperone (SGT) 99.4 2.7E-14 9.1E-19 118.5 -1.3 94 101-196 24-117 (164)
97 2vgx_A Chaperone SYCD; alterna 99.4 2.1E-13 7.3E-18 112.7 4.1 118 139-285 2-119 (148)
98 3nf1_A KLC 1, kinesin light ch 99.4 3.1E-14 1.1E-18 126.8 -1.3 182 103-284 42-307 (311)
99 3ro2_A PINS homolog, G-protein 99.4 3.2E-14 1.1E-18 126.9 -1.4 203 103-307 20-279 (338)
100 4a1s_A PINS, partner of inscut 99.4 3E-14 1E-18 133.2 -1.8 206 103-308 101-360 (411)
101 3dra_A Protein farnesyltransfe 99.4 4.5E-13 1.5E-17 125.2 6.1 193 104-299 85-301 (306)
102 3k9i_A BH0479 protein; putativ 99.4 1E-13 3.5E-18 109.1 1.5 89 103-193 5-96 (117)
103 1qqe_A Vesicular transport pro 99.4 1.5E-13 5.1E-18 125.3 2.7 156 102-286 51-230 (292)
104 1a17_A Serine/threonine protei 99.4 2.9E-13 9.9E-18 110.1 4.1 133 122-283 11-145 (166)
105 3upv_A Heat shock protein STI1 99.3 3.1E-14 1.1E-18 112.6 -2.4 86 101-188 17-102 (126)
106 3as5_A MAMA; tetratricopeptide 99.3 4.7E-13 1.6E-17 109.7 4.4 144 102-247 22-168 (186)
107 2kck_A TPR repeat; tetratricop 99.3 8.4E-14 2.9E-18 105.5 -0.3 100 119-218 1-103 (112)
108 4f3v_A ESX-1 secretion system 99.3 2.1E-12 7E-17 119.5 8.9 180 125-306 8-223 (282)
109 3rkv_A Putative peptidylprolyl 99.3 8.6E-14 3E-18 115.2 -0.4 90 101-192 24-131 (162)
110 3ulq_A Response regulator aspa 99.3 2.7E-13 9.4E-18 127.0 2.9 182 103-284 158-368 (383)
111 1hxi_A PEX5, peroxisome target 99.3 8.6E-14 2.9E-18 111.2 -0.5 100 119-218 11-111 (121)
112 1na0_A Designed protein CTPR3; 99.3 7.6E-13 2.6E-17 101.6 4.9 123 118-305 2-125 (125)
113 2fbn_A 70 kDa peptidylprolyl i 99.3 4.1E-13 1.4E-17 114.7 3.7 149 103-282 19-184 (198)
114 3sf4_A G-protein-signaling mod 99.3 9.4E-14 3.2E-18 128.4 -0.5 206 103-308 62-324 (406)
115 2dba_A Smooth muscle cell asso 99.3 1.3E-12 4.4E-17 104.2 6.0 122 119-305 23-147 (148)
116 2vsy_A XCC0866; transferase, g 99.3 8E-13 2.7E-17 131.0 5.6 141 137-308 2-142 (568)
117 4gcn_A Protein STI-1; structur 99.3 1.2E-13 4.1E-18 111.2 -0.4 88 101-190 21-115 (127)
118 3q49_B STIP1 homology and U bo 99.3 2.5E-13 8.6E-18 107.9 1.3 99 119-217 4-102 (137)
119 3ulq_A Response regulator aspa 99.3 3.5E-13 1.2E-17 126.2 2.5 115 103-217 118-249 (383)
120 2fo7_A Synthetic consensus TPR 99.3 5.2E-13 1.8E-17 103.3 2.8 131 125-284 2-132 (136)
121 1elw_A TPR1-domain of HOP; HOP 99.3 2.4E-12 8.3E-17 98.0 6.4 114 123-301 3-116 (118)
122 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.7E-13 5.8E-18 133.7 -0.5 169 119-307 219-401 (457)
123 1a17_A Serine/threonine protei 99.3 2E-13 7E-18 111.0 -0.1 113 103-217 28-142 (166)
124 2r5s_A Uncharacterized protein 99.3 4.9E-13 1.7E-17 112.4 2.1 153 101-283 19-172 (176)
125 2e2e_A Formate-dependent nitri 99.3 3.4E-13 1.2E-17 112.6 0.9 119 98-218 20-141 (177)
126 2l6j_A TPR repeat-containing p 99.3 1E-13 3.4E-18 106.0 -2.5 69 123-191 3-71 (111)
127 3ro2_A PINS homolog, G-protein 99.3 1.6E-13 5.6E-18 122.2 -2.1 206 103-308 58-320 (338)
128 3rjv_A Putative SEL1 repeat pr 99.3 2.6E-12 8.8E-17 112.0 5.6 181 105-300 3-209 (212)
129 2e2e_A Formate-dependent nitri 99.3 1.1E-12 3.7E-17 109.5 2.6 129 129-286 15-146 (177)
130 3qou_A Protein YBBN; thioredox 99.3 1.2E-12 4E-17 119.5 2.4 145 100-246 129-278 (287)
131 2lni_A Stress-induced-phosphop 99.3 5.2E-13 1.8E-17 104.4 -0.0 92 101-194 29-120 (133)
132 1wao_1 Serine/threonine protei 99.2 4.4E-13 1.5E-17 131.8 -1.5 97 121-217 3-99 (477)
133 3q7a_A Farnesyltransferase alp 99.2 2.3E-12 7.9E-17 122.5 3.2 170 103-305 69-256 (349)
134 3rkv_A Putative peptidylprolyl 99.2 1.3E-12 4.4E-17 108.0 1.3 97 122-218 9-123 (162)
135 3q15_A PSP28, response regulat 99.2 6.2E-12 2.1E-16 117.9 6.0 181 103-283 156-364 (378)
136 2if4_A ATFKBP42; FKBP-like, al 99.2 1.6E-12 5.5E-17 121.8 1.6 147 107-284 164-328 (338)
137 3ma5_A Tetratricopeptide repea 99.2 6.4E-13 2.2E-17 102.3 -1.3 75 119-193 2-76 (100)
138 1elr_A TPR2A-domain of HOP; HO 99.2 3.5E-12 1.2E-16 98.9 2.7 127 121-306 1-127 (131)
139 1qqe_A Vesicular transport pro 99.2 5E-12 1.7E-16 115.1 4.2 160 125-307 38-215 (292)
140 2yhc_A BAMD, UPF0169 lipoprote 99.2 6.4E-12 2.2E-16 109.8 4.0 169 100-284 16-213 (225)
141 2vyi_A SGTA protein; chaperone 99.2 1E-12 3.4E-17 101.8 -1.2 90 103-194 27-116 (131)
142 1hh8_A P67PHOX, NCF-2, neutrop 99.2 3.6E-12 1.2E-16 108.6 2.2 111 103-218 21-147 (213)
143 3dss_A Geranylgeranyl transfer 99.2 4.6E-12 1.6E-16 119.7 2.7 181 103-285 45-268 (331)
144 1wao_1 Serine/threonine protei 99.2 1.4E-12 4.9E-17 128.1 -1.5 116 99-216 17-134 (477)
145 2fbn_A 70 kDa peptidylprolyl i 99.2 1.1E-12 3.8E-17 112.0 -2.0 92 101-194 51-158 (198)
146 3edt_B KLC 2, kinesin light ch 99.2 4.1E-12 1.4E-16 111.0 1.5 150 135-284 12-198 (283)
147 3e4b_A ALGK; tetratricopeptide 99.2 6E-11 2E-15 115.3 9.8 172 124-303 176-366 (452)
148 3q49_B STIP1 homology and U bo 99.2 1E-12 3.5E-17 104.3 -3.1 89 102-192 23-111 (137)
149 2kat_A Uncharacterized protein 99.1 4E-12 1.4E-16 99.0 0.3 85 106-192 3-87 (115)
150 2if4_A ATFKBP42; FKBP-like, al 99.1 6.4E-12 2.2E-16 117.7 1.7 91 102-194 193-300 (338)
151 2fo7_A Synthetic consensus TPR 99.1 4.4E-12 1.5E-16 98.0 0.4 114 102-217 15-128 (136)
152 2dba_A Smooth muscle cell asso 99.1 5.7E-12 2E-16 100.4 0.5 91 101-193 41-134 (148)
153 3gw4_A Uncharacterized protein 99.1 1.3E-11 4.4E-16 103.7 2.6 156 104-284 8-176 (203)
154 1zu2_A Mitochondrial import re 99.1 1.4E-11 4.7E-16 104.6 2.7 60 135-194 13-82 (158)
155 3q15_A PSP28, response regulat 99.1 2.2E-11 7.4E-16 114.1 4.3 160 125-284 102-290 (378)
156 2xev_A YBGF; tetratricopeptide 99.1 5.5E-12 1.9E-16 99.0 0.1 93 125-217 3-101 (129)
157 1elw_A TPR1-domain of HOP; HOP 99.1 6.7E-12 2.3E-16 95.5 0.5 89 103-193 19-107 (118)
158 1dce_A Protein (RAB geranylger 99.1 2E-12 6.8E-17 130.1 -3.4 162 103-285 88-268 (567)
159 1na3_A Designed protein CTPR2; 99.1 6.7E-12 2.3E-16 92.4 0.3 76 119-194 3-79 (91)
160 3k9i_A BH0479 protein; putativ 99.1 9.8E-12 3.3E-16 97.6 1.3 82 136-217 2-86 (117)
161 2kck_A TPR repeat; tetratricop 99.1 8.7E-12 3E-16 94.2 0.9 88 103-192 21-111 (112)
162 3q7a_A Farnesyltransferase alp 99.1 1.2E-10 4E-15 110.8 8.6 189 104-295 105-341 (349)
163 2ifu_A Gamma-SNAP; membrane fu 99.1 3.1E-11 1.1E-15 110.6 4.1 156 103-285 51-224 (307)
164 2xev_A YBGF; tetratricopeptide 99.1 6.8E-12 2.3E-16 98.4 -0.4 90 102-193 16-111 (129)
165 3ro3_A PINS homolog, G-protein 99.1 1.4E-11 5E-16 98.1 1.5 140 122-284 7-158 (164)
166 2xm6_A Protein corresponding t 99.1 7.5E-11 2.6E-15 114.5 6.5 63 123-187 182-252 (490)
167 2xm6_A Protein corresponding t 99.1 1.5E-10 5.2E-15 112.4 7.3 186 104-303 131-340 (490)
168 1ihg_A Cyclophilin 40; ppiase 99.1 1.7E-11 5.7E-16 116.7 0.2 110 103-212 238-361 (370)
169 1na0_A Designed protein CTPR3; 99.1 1.1E-11 3.7E-16 95.0 -1.1 90 102-193 23-112 (125)
170 2qfc_A PLCR protein; TPR, HTH, 99.1 1.3E-10 4.5E-15 105.3 5.9 167 119-308 70-253 (293)
171 2ooe_A Cleavage stimulation fa 99.0 2.8E-10 9.4E-15 111.6 8.0 177 106-283 304-491 (530)
172 3dss_A Geranylgeranyl transfer 99.0 4E-11 1.4E-15 113.3 1.9 187 103-297 89-315 (331)
173 1ihg_A Cyclophilin 40; ppiase 99.0 5.2E-11 1.8E-15 113.3 2.4 96 122-217 221-332 (370)
174 2qfc_A PLCR protein; TPR, HTH, 99.0 1.4E-10 4.9E-15 105.0 5.2 157 103-284 90-266 (293)
175 3u3w_A Transcriptional activat 99.0 9.3E-11 3.2E-15 106.3 3.2 159 103-284 90-266 (293)
176 2kc7_A BFR218_protein; tetratr 99.0 4E-11 1.4E-15 90.4 0.3 83 127-217 3-86 (99)
177 3rjv_A Putative SEL1 repeat pr 99.0 8.9E-10 3E-14 95.7 8.8 156 141-304 3-175 (212)
178 3e4b_A ALGK; tetratricopeptide 99.0 7E-10 2.4E-14 107.7 7.8 173 120-303 137-330 (452)
179 1hz4_A MALT regulatory protein 99.0 1.2E-10 3.9E-15 108.1 1.5 203 103-307 68-309 (373)
180 2ifu_A Gamma-SNAP; membrane fu 98.9 2.5E-10 8.5E-15 104.6 3.3 159 125-307 37-211 (307)
181 1elr_A TPR2A-domain of HOP; HO 98.9 7.3E-11 2.5E-15 91.3 -0.6 87 102-190 18-111 (131)
182 1hz4_A MALT regulatory protein 98.9 3.4E-10 1.2E-14 104.9 3.6 203 103-307 29-269 (373)
183 2l6j_A TPR repeat-containing p 98.9 7.3E-11 2.5E-15 89.8 -1.1 81 102-184 18-104 (111)
184 3bee_A Putative YFRE protein; 98.9 5.7E-10 2E-14 86.0 2.3 73 120-192 2-77 (93)
185 3u3w_A Transcriptional activat 98.9 3.5E-09 1.2E-13 95.8 7.5 164 121-306 72-251 (293)
186 1xi4_A Clathrin heavy chain; a 98.8 4.2E-09 1.4E-13 114.3 8.2 161 108-283 1089-1249(1630)
187 3gw4_A Uncharacterized protein 98.8 6.8E-10 2.3E-14 93.1 1.3 152 134-308 2-164 (203)
188 1b89_A Protein (clathrin heavy 98.8 1.5E-09 5.2E-14 106.1 3.7 163 124-308 32-194 (449)
189 2kc7_A BFR218_protein; tetratr 98.8 4.8E-10 1.6E-14 84.4 -0.9 83 101-193 13-96 (99)
190 2kat_A Uncharacterized protein 98.8 1.7E-09 5.8E-14 83.9 2.2 78 141-218 2-79 (115)
191 3ma5_A Tetratricopeptide repea 98.7 6.1E-09 2.1E-13 79.7 2.8 41 153-193 2-42 (100)
192 4b4t_Q 26S proteasome regulato 98.6 1.1E-08 3.6E-13 96.2 3.1 185 124-308 4-233 (434)
193 1b89_A Protein (clathrin heavy 98.5 3.9E-08 1.3E-12 96.1 3.4 168 125-308 123-299 (449)
194 3mv2_B Coatomer subunit epsilo 98.5 4.1E-08 1.4E-12 91.8 3.2 172 107-285 85-283 (310)
195 3ro3_A PINS homolog, G-protein 98.5 7.8E-09 2.7E-13 82.0 -2.5 113 103-217 24-154 (164)
196 1na3_A Designed protein CTPR2; 98.4 1.9E-08 6.5E-13 73.5 -0.9 68 103-172 24-91 (91)
197 1xi4_A Clathrin heavy chain; a 98.4 4.6E-07 1.6E-11 98.6 9.1 148 136-308 1088-1238(1630)
198 2v5f_A Prolyl 4-hydroxylase su 98.3 9E-08 3.1E-12 74.3 1.0 70 124-193 5-81 (104)
199 1pc2_A Mitochondria fission pr 98.3 7.2E-08 2.5E-12 81.1 0.1 86 106-193 16-106 (152)
200 4e6h_A MRNA 3'-END-processing 98.3 7.3E-07 2.5E-11 91.5 6.1 198 108-307 329-557 (679)
201 3mv2_B Coatomer subunit epsilo 98.2 1.2E-06 4E-11 81.9 6.3 163 143-306 85-270 (310)
202 4b4t_Q 26S proteasome regulato 98.1 8.4E-07 2.9E-11 83.1 2.7 179 103-283 19-244 (434)
203 3n71_A Histone lysine methyltr 98.1 3E-06 1E-10 83.8 5.3 134 128-283 313-463 (490)
204 1klx_A Cysteine rich protein B 98.0 1.8E-06 6.2E-11 70.0 2.4 121 138-298 9-136 (138)
205 3n71_A Histone lysine methyltr 98.0 1.2E-06 4.2E-11 86.5 1.1 115 103-217 324-460 (490)
206 3u64_A Protein TP_0956; tetrat 97.9 1.9E-06 6.5E-11 79.7 1.0 87 103-191 178-273 (301)
207 3u64_A Protein TP_0956; tetrat 97.9 4.2E-06 1.4E-10 77.4 2.4 106 112-218 141-266 (301)
208 3ly7_A Transcriptional activat 97.8 3.2E-06 1.1E-10 80.6 1.1 74 118-192 271-344 (372)
209 3qww_A SET and MYND domain-con 97.8 6.7E-06 2.3E-10 80.0 2.0 89 105-193 315-422 (433)
210 3qww_A SET and MYND domain-con 97.7 2.5E-05 8.5E-10 76.0 4.3 33 252-284 379-411 (433)
211 1klx_A Cysteine rich protein B 97.7 9.3E-06 3.2E-10 65.8 1.0 105 103-217 10-122 (138)
212 3ly7_A Transcriptional activat 97.7 8.4E-06 2.9E-10 77.8 0.9 39 151-189 270-308 (372)
213 3qwp_A SET and MYND domain-con 97.7 1.1E-05 3.9E-10 78.2 1.7 84 104-187 303-400 (429)
214 3qwp_A SET and MYND domain-con 97.5 2.1E-05 7.2E-10 76.3 1.8 96 134-284 297-400 (429)
215 3bee_A Putative YFRE protein; 97.4 3.9E-05 1.3E-09 58.6 1.8 65 154-218 2-69 (93)
216 1nzn_A CGI-135 protein, fissio 97.4 4E-05 1.4E-09 62.2 0.9 86 107-194 20-110 (126)
217 4e6h_A MRNA 3'-END-processing 96.7 0.0015 5.2E-08 66.9 6.0 175 105-283 360-569 (679)
218 2v5f_A Prolyl 4-hydroxylase su 96.2 0.00087 3E-08 51.3 0.3 62 104-165 21-87 (104)
219 3o48_A Mitochondria fission 1 95.9 0.0031 1.1E-07 51.5 2.3 72 123-194 39-114 (134)
220 1pc2_A Mitochondria fission pr 95.9 0.0007 2.4E-08 56.6 -1.8 80 138-217 12-96 (152)
221 4h7y_A Dual specificity protei 95.6 0.0081 2.8E-07 50.2 3.6 109 119-230 8-135 (161)
222 1y8m_A FIS1; mitochondria, unk 95.5 0.005 1.7E-07 50.8 2.1 73 121-193 36-112 (144)
223 2uy1_A Cleavage stimulation fa 95.3 0.016 5.4E-07 56.7 5.1 55 107-164 198-252 (493)
224 2uy1_A Cleavage stimulation fa 94.3 0.014 5E-07 57.0 1.9 157 142-306 197-369 (493)
225 4g26_A Pentatricopeptide repea 92.8 0.2 6.7E-06 49.1 7.2 152 127-283 29-203 (501)
226 3ffl_A Anaphase-promoting comp 92.8 0.013 4.5E-07 49.6 -1.1 86 124-221 63-151 (167)
227 3ffl_A Anaphase-promoting comp 92.7 0.016 5.3E-07 49.1 -0.7 64 125-188 21-93 (167)
228 1zbp_A Hypothetical protein VP 91.6 0.082 2.8E-06 48.0 2.5 60 133-192 6-65 (273)
229 1nzn_A CGI-135 protein, fissio 91.2 0.073 2.5E-06 42.9 1.6 58 107-166 57-116 (126)
230 2ff4_A Probable regulatory pro 90.4 0.081 2.8E-06 50.1 1.4 62 125-186 172-233 (388)
231 3mkq_A Coatomer beta'-subunit; 88.8 0.33 1.1E-05 48.6 4.6 45 135-184 663-707 (814)
232 4gns_B Protein CSD3, chitin bi 87.4 0.19 6.4E-06 52.0 1.7 63 123-185 336-398 (754)
233 3o48_A Mitochondria fission 1 85.9 0.19 6.6E-06 40.8 0.7 49 119-167 72-121 (134)
234 4h7y_A Dual specificity protei 85.0 0.38 1.3E-05 40.1 2.1 86 107-193 38-129 (161)
235 4g26_A Pentatricopeptide repea 85.0 0.51 1.7E-05 46.1 3.3 111 103-218 85-201 (501)
236 3mkq_B Coatomer subunit alpha; 83.2 1.1 3.8E-05 38.0 4.3 45 136-185 17-61 (177)
237 3kae_A CDC27, possible protein 82.8 1.3 4.3E-05 38.0 4.4 109 154-283 29-142 (242)
238 1ya0_A SMG-7 transcript varian 82.7 0.35 1.2E-05 47.6 1.1 68 125-192 153-220 (497)
239 1y8m_A FIS1; mitochondria, unk 81.5 0.38 1.3E-05 39.5 0.7 47 119-165 71-118 (144)
240 2ff4_A Probable regulatory pro 79.7 1.4 4.6E-05 41.6 4.0 70 160-231 173-252 (388)
241 1qsa_A Protein (soluble lytic 79.5 2.1 7.2E-05 43.1 5.5 152 126-283 254-409 (618)
242 4b4t_S RPN3, 26S proteasome re 78.8 0.61 2.1E-05 46.1 1.3 137 133-284 145-299 (523)
243 3mkq_A Coatomer beta'-subunit; 76.8 1.8 6.2E-05 43.2 4.1 101 168-283 662-764 (814)
244 4fhn_B Nucleoporin NUP120; pro 68.6 1.4 4.8E-05 47.4 1.1 98 121-218 839-964 (1139)
245 3mkq_B Coatomer subunit alpha; 63.8 7.1 0.00024 32.9 4.3 86 122-220 32-117 (177)
246 4b4t_S RPN3, 26S proteasome re 57.9 7.7 0.00026 38.3 4.0 70 124-193 231-305 (523)
247 3lvg_A Clathrin heavy chain 1; 55.7 0.23 8E-06 49.1 -7.1 163 122-306 52-214 (624)
248 1zbp_A Hypothetical protein VP 55.4 4.6 0.00016 36.5 1.8 56 101-158 10-65 (273)
249 4fhn_B Nucleoporin NUP120; pro 49.6 41 0.0014 35.9 8.4 155 132-305 820-985 (1139)
250 3ax2_A Mitochondrial import re 47.7 3.6 0.00012 29.7 -0.2 29 128-156 21-49 (73)
251 3kae_A CDC27, possible protein 47.6 6.8 0.00023 33.5 1.5 68 124-191 62-147 (242)
252 4ady_A RPN2, 26S proteasome re 44.3 31 0.0011 36.5 6.2 177 125-306 377-575 (963)
253 3txn_A 26S proteasome regulato 43.2 58 0.002 30.7 7.4 79 230-308 106-198 (394)
254 4b4t_R RPN7, 26S proteasome re 42.7 5.9 0.0002 37.6 0.4 95 124-218 131-234 (429)
255 4b4t_R RPN7, 26S proteasome re 40.8 7.6 0.00026 36.9 0.8 77 232-308 140-225 (429)
256 1ya0_A SMG-7 transcript varian 39.6 5.5 0.00019 39.0 -0.4 65 104-170 168-232 (497)
257 3ax2_A Mitochondrial import re 39.1 11 0.00039 27.0 1.4 29 162-190 21-49 (73)
258 1qsa_A Protein (soluble lytic 37.5 14 0.00047 37.1 2.2 55 131-186 293-347 (618)
259 2crb_A Nuclear receptor bindin 35.6 14 0.00047 27.9 1.3 26 161-186 18-43 (97)
260 4gq2_M Nucleoporin NUP120; bet 34.3 18 0.00062 38.1 2.5 49 132-184 818-866 (950)
261 4gns_B Protein CSD3, chitin bi 33.4 9.6 0.00033 39.3 0.2 52 163-216 342-395 (754)
262 3t5x_A PCI domain-containing p 32.3 22 0.00074 30.3 2.3 32 253-284 12-43 (203)
263 3t5x_A PCI domain-containing p 32.0 18 0.00062 30.8 1.8 38 123-160 13-50 (203)
264 2crb_A Nuclear receptor bindin 31.4 14 0.00048 27.9 0.8 30 122-151 13-42 (97)
265 1wy6_A Hypothetical protein ST 31.3 1.4E+02 0.0046 24.6 6.7 76 207-283 76-153 (172)
266 4gq2_M Nucleoporin NUP120; bet 30.8 81 0.0028 33.0 6.8 128 164-305 816-950 (950)
267 1om2_A Protein (mitochondrial 29.5 6.5 0.00022 29.8 -1.4 29 128-156 24-52 (95)
268 2w2u_A Hypothetical P60 katani 26.7 15 0.00051 26.9 0.2 17 174-190 42-58 (83)
269 2p58_C Putative type III secre 26.0 35 0.0012 26.4 2.1 66 151-221 33-98 (116)
270 2uwj_G Type III export protein 24.1 34 0.0012 26.4 1.8 65 151-220 32-96 (115)
271 1om2_A Protein (mitochondrial 23.4 48 0.0017 24.9 2.5 30 257-287 22-51 (95)
272 2v6y_A AAA family ATPase, P60 23.1 19 0.00066 26.1 0.2 19 173-191 33-51 (83)
273 4a5x_A MITD1, MIT domain-conta 21.9 31 0.0011 25.3 1.2 25 162-186 20-44 (86)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.84 E-value=1e-21 Score=172.27 Aligned_cols=185 Identities=16% Similarity=0.104 Sum_probs=114.0
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL 200 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l 200 (310)
|+++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.++...+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 55566666666666666666666666666666666666666666666666666666666666666666666553333333
Q ss_pred hhhhh-----------cChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhh
Q 021611 201 CEAQL-----------YGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLF 264 (310)
Q Consensus 201 ~~a~l-----------~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~ 264 (310)
+.... |++++|+..+.++ .|+....+......+...|++++|+..+... .+ +...+++.+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 33355 6666666655542 2332222222223344456666665555421 12 445667789999
Q ss_pred hhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 265 YESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 265 ~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
+..+|++++|+..|++++++. +.+.+.+.+++.++...|++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-----
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHH
Confidence 999999999999999999844 346688889999999998874
No 2
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.81 E-value=4e-21 Score=168.47 Aligned_cols=181 Identities=11% Similarity=0.016 Sum_probs=136.8
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhh---------
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL--------- 171 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l--------- 171 (310)
.+...+|...+.+++. ++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++++|.++..+
T Consensus 18 ~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 95 (217)
T 2pl2_A 18 LGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRER 95 (217)
T ss_dssp TTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcc
Confidence 3456789999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred --hhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC--CChhhHHHHHHhhcCCCChHHHHHHhc
Q 021611 172 --DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR--DPRPVMREAYNMFKGGGDPEKLVAAFS 247 (310)
Q Consensus 172 --g~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~--d~~~~~~~a~~l~~~~~~~e~al~~~~ 247 (310)
|++++|+..|+++++++|+++.++...+.+...+|++++|+..+.++.. +....+......+...|++++++..+.
T Consensus 96 ~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 96 GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999987554444445588999999998876321 333333333344555788999888876
Q ss_pred C--CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 248 S--GRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 248 ~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
. ...|+...+++.+|.++..+|++++|+.+|+++-.
T Consensus 176 ~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 176 KALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 3 23566677888999999999999999999998753
No 3
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.78 E-value=3.7e-20 Score=177.93 Aligned_cols=199 Identities=12% Similarity=-0.028 Sum_probs=155.7
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccc-cccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD-VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~-~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
+...+|...+++++. ++|+++.+|++||.++..+|+ +++|+++|+++|+++|++..+|+++|.++..+|++++|+.+
T Consensus 111 g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~ 188 (382)
T 2h6f_A 111 ERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF 188 (382)
T ss_dssp CCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred CChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 357788999999998 999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHH-HHHHhhcCCCChHHH-----HHHhcC--C
Q 021611 181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMR-EAYNMFKGGGDPEKL-----VAAFSS--G 249 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~-~a~~l~~~~~~~e~a-----l~~~~~--~ 249 (310)
|+++++++|++..++..++.+...+|++++|+..+.++ .++....+. .+..+....+..+++ +..+.. .
T Consensus 189 ~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~ 268 (382)
T 2h6f_A 189 IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268 (382)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 99999999999876554555555889999999988763 444333333 333333324553444 244432 2
Q ss_pred CCcchhHhhhhhhhhhhhcc--chhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611 250 RENEYFYASLYAGLFYESQK--KADAAKLHILAACESPYGQRSDDYMAALAKVHSLCR 305 (310)
Q Consensus 250 ~~~d~~~a~~~lG~~~~~~G--~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~ 305 (310)
.+|+...+++++|.++..+| ++++|+..+.++ +. ...+...+..|+.++..+|
T Consensus 269 l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 269 LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHh
Confidence 35666778889999998888 699999999887 53 3456677778888888764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.78 E-value=3.7e-19 Score=166.33 Aligned_cols=200 Identities=14% Similarity=0.061 Sum_probs=145.5
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...+|...|.+++. ++|+++.+|..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|++.|+
T Consensus 184 ~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 261 (388)
T 1w3b_A 184 EIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45567777777777 7888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHh
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYA 257 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a 257 (310)
++++++|+++..+...+.+..+.|++++|+..+.++ .++....+......+...|++++|+..+.. ...|+...+
T Consensus 262 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T 1w3b_A 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp HHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 888888877664333333334678888888877653 333333333334455567788888777752 334556667
Q ss_pred hhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 258 SLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
++.+|.++..+|++++|+.+|++++++. +...+.+.++|.++..+|+
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHhHHHHHHHccC
Confidence 7788888888888888888888888854 3456788888888777663
No 5
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.78 E-value=1.2e-19 Score=152.51 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=134.7
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC 201 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~ 201 (310)
+++.+|+++|.++..+|++++|++.|+++++++|+++.+++.+|.++..+|++++|++.+++++..+|+++......+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999987754444444
Q ss_pred hhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhhHHH
Q 021611 202 EAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADAAKL 276 (310)
Q Consensus 202 ~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~ 276 (310)
....+++++|...+.++ .++....+......+...|++++|+..+.. ..+|+...+++.+|.++..+|++++|+.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 44778899998887663 344333333333445557899999888763 2356667788899999999999999999
Q ss_pred HHHHhhcCC
Q 021611 277 HILAACESP 285 (310)
Q Consensus 277 ~~~kAl~~~ 285 (310)
+|++|+++.
T Consensus 163 ~~~~al~~~ 171 (184)
T 3vtx_A 163 YFKKALEKE 171 (184)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhCC
Confidence 999999954
No 6
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=8.7e-20 Score=168.96 Aligned_cols=205 Identities=13% Similarity=0.058 Sum_probs=164.3
Q ss_pred chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
+.+...+|...|.+++. .+|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..+|.++..+|++++|++
T Consensus 77 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 154 (365)
T 4eqf_A 77 KEGDLPVTILFMEAAIL--QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE 154 (365)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHH
Confidence 34467789999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCCccceee----------eehhhhhcChHHHHHhHHHh---cCC--ChhhHHHHHHhhcCCCChHHHHH
Q 021611 180 QFRIDVAQNPNDTEESIWC----------FLCEAQLYGVDEARNRFLEV---GRD--PRPVMREAYNMFKGGGDPEKLVA 244 (310)
Q Consensus 180 ~f~~Al~l~P~d~~~~~~~----------~l~~a~l~~~~eA~~~l~~~---~~d--~~~~~~~a~~l~~~~~~~e~al~ 244 (310)
.|+++++++|++....... +.+....|++++|+..+.++ .++ ....+......+...|++++|+.
T Consensus 155 ~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 234 (365)
T 4eqf_A 155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234 (365)
T ss_dssp HHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999876543222 22334678899999988764 333 22223333334555788999888
Q ss_pred HhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 245 AFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 245 ~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
.+... ..|+...++..+|.++..+|++++|+.+|++++++. +.+...+.++|.++..+|+|.
T Consensus 235 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 235 AFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHH
Confidence 77532 245556678889999999999999999999999954 345788899999999999874
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.77 E-value=2.8e-19 Score=167.14 Aligned_cols=201 Identities=15% Similarity=0.032 Sum_probs=104.0
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...+|...|.+++. ++|+++.++..+|.++..+|++++|++.|+++++++|++..++.++|.++...|++++|++.|+
T Consensus 116 ~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 116 DMEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp CSSHHHHHHHHHHH--HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444445555554 5555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHh
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYA 257 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a 257 (310)
++++++|+++.++...+.+....|++++|+..+.++ .|+....+......+...|++++++..+.. ...|+...+
T Consensus 194 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 273 (388)
T 1w3b_A 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 555555555443222222222445555555554432 222222222222233345566666555542 123334445
Q ss_pred hhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 258 SLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
+..+|.++..+|++++|+..|+++++.. +.+.+.+.+++.++...|+|
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCH
Confidence 5566666666777777777777776632 23446666667777666665
No 8
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.76 E-value=3e-19 Score=171.59 Aligned_cols=188 Identities=9% Similarity=-0.072 Sum_probs=154.5
Q ss_pred hcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhh-hhhhhhhhhhhhccCCCCC
Q 021611 114 LTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR-FEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 114 ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~-~~eA~~~f~~Al~l~P~d~ 192 (310)
+|. ++|+++.+|..+|.++...|++++|++.|+++|+++|++..+|+++|.++..+|+ +++|+++|+++++++|+++
T Consensus 89 ai~--~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 89 QII--YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp EEC--CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred hhh--CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 355 9999999999999999999999999999999999999999999999999999997 9999999999999999998
Q ss_pred ccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhh
Q 021611 193 EESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYES 267 (310)
Q Consensus 193 ~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~ 267 (310)
.++..++.+...+|++++|+..+.++ .++....+......+...|++++++..+.. ..+|+...+++++|.++..
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 86555555555889999999988774 344333333333344446778888877763 3456678889999999999
Q ss_pred -ccchhhH-----HHHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611 268 -QKKADAA-----KLHILAACESPYGQRSDDYMAALAKVHSLCR 305 (310)
Q Consensus 268 -~G~~d~A-----~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~ 305 (310)
.|..++| +.+|++|+++. +.+...+.+++.++...|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRG 288 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTC
T ss_pred hcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccC
Confidence 6666888 59999999955 346688899999988876
No 9
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.75 E-value=4.1e-19 Score=183.76 Aligned_cols=166 Identities=11% Similarity=0.039 Sum_probs=138.1
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC 198 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~ 198 (310)
..|+++++|+++|.++..+|++++|++.|++||+++|++..+++++|.++..+|++++|++.|+++++++|++++++...
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998865544
Q ss_pred eehhhhhcChHHHHHhHHH---hcCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhh
Q 021611 199 FLCEAQLYGVDEARNRFLE---VGRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADA 273 (310)
Q Consensus 199 ~l~~a~l~~~~eA~~~l~~---~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~ 273 (310)
+.+...+|++++|++.+.+ +.++....+......+...|++++|++.++. ..+|+...++..+|.++..+|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 4455588999999998876 3444444444444456667888888887763 2356677788889999999999999
Q ss_pred HHHHHHHhhcC
Q 021611 274 AKLHILAACES 284 (310)
Q Consensus 274 A~~~~~kAl~~ 284 (310)
|.+.|++++++
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988873
No 10
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=6.1e-19 Score=158.86 Aligned_cols=111 Identities=11% Similarity=-0.018 Sum_probs=53.6
Q ss_pred cchhhhhhhhcCCCCchhHHHHHHHhhhhheecc-ccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG-DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g-~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
.++...+.+++. .+|+++.+|+.+|.++...| ++++|+..|+++++++|++..++..+|.++...|++++|++.|++
T Consensus 73 ~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 150 (330)
T 3hym_B 73 NELFYLSHKLVD--LYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFT 150 (330)
T ss_dssp HHHHHHHHHHHH--HCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 344444444444 45555555555555555555 455555555555555555555555555555555555555555555
Q ss_pred hhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611 184 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 184 Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~ 217 (310)
+++++|++.....+.+.+....|++++|...+.+
T Consensus 151 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555554443322222222244445555544443
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=2.2e-18 Score=158.55 Aligned_cols=204 Identities=13% Similarity=0.039 Sum_probs=165.6
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.+...+|...+.+++. .+|+++.+|+.+|.++...|++++|++.|+++++++|+++.+++.+|.++...|++++|++.
T Consensus 77 ~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEI 154 (368)
T ss_dssp TTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3467789999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCccceee--------------eehhh-hhcChHHHHHhHHHh---cCC--ChhhHHHHHHhhcCCCChH
Q 021611 181 FRIDVAQNPNDTEESIWC--------------FLCEA-QLYGVDEARNRFLEV---GRD--PRPVMREAYNMFKGGGDPE 240 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~--------------~l~~a-~l~~~~eA~~~l~~~---~~d--~~~~~~~a~~l~~~~~~~e 240 (310)
|+++++++|++....... .++.. ..|++++|+..+.++ .++ ....+......+...|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~ 234 (368)
T 1fch_A 155 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 234 (368)
T ss_dssp HHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHH
Confidence 999999999987643321 22222 678899999988763 333 2222323333455578899
Q ss_pred HHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 241 KLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 241 ~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
+|+..+... ..|+...+++.+|.++..+|++++|+.+|++++++. +.....+.++|.++..+|+|.
T Consensus 235 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHH
Confidence 988877532 244556678889999999999999999999999954 345688899999999999874
No 12
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.72 E-value=2.7e-18 Score=138.80 Aligned_cols=117 Identities=13% Similarity=0.161 Sum_probs=102.2
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC 198 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~ 198 (310)
+||+.+++|.++|.+++.+|+|++|++.|++||+++|+++.+|+++|.++..+|++++|+++|+++++++|+++.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----- 82 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK----- 82 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH-----
Confidence 899999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred eehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHH
Q 021611 199 FLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHI 278 (310)
Q Consensus 199 ~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~ 278 (310)
+++.+|.++..+|++++|+.+|
T Consensus 83 ----------------------------------------------------------a~~~lg~~~~~~~~~~~A~~~~ 104 (126)
T 4gco_A 83 ----------------------------------------------------------GYIRKAACLVAMREWSKAQRAY 104 (126)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHHHHCCCHHHHHHHH
Confidence 2345777788888888888888
Q ss_pred HHhhcCCCCCCChHHHHHHHHH
Q 021611 279 LAACESPYGQRSDDYMAALAKV 300 (310)
Q Consensus 279 ~kAl~~~~~~~s~~~~~~la~~ 300 (310)
++++++. +.+.+...+|+.+
T Consensus 105 ~~al~l~--P~~~~a~~~l~~~ 124 (126)
T 4gco_A 105 EDALQVD--PSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHC--cCCHHHHHHHHHh
Confidence 8888854 3455676677654
No 13
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.72 E-value=6.3e-18 Score=147.06 Aligned_cols=180 Identities=12% Similarity=0.109 Sum_probs=95.6
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCc-chhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP-RQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC 201 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P-~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~ 201 (310)
++.+++.+|.+++..|++++|++.|+++++++| .+..+++++|.++..+|++++|++.|+++++++|+++.++...+.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 345555555555555555555555555555555 4555555555555555555555555555555555544432222222
Q ss_pred hhhhcChHHHHHhHHHh---cCCChhh-------HHHHHHhhcCCCChHHHHHHhc--CCCCcc--hhHhhhhhhhhhhh
Q 021611 202 EAQLYGVDEARNRFLEV---GRDPRPV-------MREAYNMFKGGGDPEKLVAAFS--SGRENE--YFYASLYAGLFYES 267 (310)
Q Consensus 202 ~a~l~~~~eA~~~l~~~---~~d~~~~-------~~~a~~l~~~~~~~e~al~~~~--~~~~~d--~~~a~~~lG~~~~~ 267 (310)
...+|++++|+..+.++ .|+.... +......+...|++++|+..+. ....|+ ...+++.+|.++..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 33455555555554442 2221100 1111112233455555555553 222344 34455555555555
Q ss_pred ccch---------------------------hhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcc
Q 021611 268 QKKA---------------------------DAAKLHILAACESPYGQRSDDYMAALAKVHSLC 304 (310)
Q Consensus 268 ~G~~---------------------------d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~ 304 (310)
+|+. ++|+.+|++++++. +.+.+....|+.+....
T Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS--PNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHhh
Confidence 5555 99999999999954 34567777777776554
No 14
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=2.5e-18 Score=148.78 Aligned_cols=203 Identities=13% Similarity=0.057 Sum_probs=152.4
Q ss_pred cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~ 178 (310)
.+.+...+|...+.+++. .+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+
T Consensus 34 ~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 34 SEFGDYEKAAEAFTKAIE--ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp --------CCTTHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHH
Confidence 334467789999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcc
Q 021611 179 EQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENE 253 (310)
Q Consensus 179 ~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d 253 (310)
+.|+++++++|+++..+...+.+....|++++|+..+.++ .++....+......+...|++++|+..+... ..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 112 DMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999988764333333344789999999988764 3333333322333344467888887776522 2344
Q ss_pred hhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611 254 YFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCR 305 (310)
Q Consensus 254 ~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~ 305 (310)
....++.+|.++..+|++++|+.+|++++++. +.+...+..++.+....|
T Consensus 192 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQ--PDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC--TTCHHHHHHHTC------
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC--cchHHHHHHHHHHHhhcc
Confidence 55677889999999999999999999999943 345677777776665544
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=1.5e-18 Score=160.68 Aligned_cols=203 Identities=13% Similarity=0.032 Sum_probs=156.3
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh----------ccchhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR----------GLSLYY 170 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~----------G~a~~~ 170 (310)
.+...+|...+.+++. ++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..+ |.++..
T Consensus 112 ~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (365)
T 4eqf_A 112 NENEQAAIVALQRCLE--LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVD 189 (365)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------C
T ss_pred CCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhh
Confidence 3456788999999998 9999999999999999999999999999999999999998888776 999999
Q ss_pred hhhhhhhhhhhhhhhccCCC--CCccceeeeehh--hhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHH
Q 021611 171 LDRFEEGAEQFRIDVAQNPN--DTEESIWCFLCE--AQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLV 243 (310)
Q Consensus 171 lg~~~eA~~~f~~Al~l~P~--d~~~~~~~~l~~--a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al 243 (310)
.|++++|++.|+++++++|+ ++. .+..++. ...|++++|+..+.++ .++....+......+...|++++|+
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPD--LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999 554 4444444 4789999999988773 3443333434444555688999988
Q ss_pred HHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCC----------CChHHHHHHHHHhhcccCC
Q 021611 244 AAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQ----------RSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 244 ~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~----------~s~~~~~~la~~~~~~~~~ 307 (310)
..+... ..|+...+++.+|.++..+|++++|+.+|++++++.... .+...+.+|+.++..+|.+
T Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 887632 345567788899999999999999999999999853211 1357788999998888764
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=6.5e-18 Score=152.12 Aligned_cols=200 Identities=10% Similarity=-0.057 Sum_probs=161.3
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...+|...+.+++. ++|+++.+|+.+|.++...|++++|+..|+++++++|++..+++.+|.++...|++++|++.|+
T Consensus 106 ~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 106 KNEHARRYLSKATT--LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp CHHHHHHHHHHHHT--TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45568889999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC------------CChhhHHHHHHhhcCCCChHHHHHHhcCC-
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR------------DPRPVMREAYNMFKGGGDPEKLVAAFSSG- 249 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~------------d~~~~~~~a~~l~~~~~~~e~al~~~~~~- 249 (310)
++++++|+++..+...+.+....|++++|...+.++.. .....+......+...|++++|+..+...
T Consensus 184 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 184 QALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999876444333344478999999998776321 11122223333455578899988877532
Q ss_pred -CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHh-hcccC
Q 021611 250 -RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVH-SLCRN 306 (310)
Q Consensus 250 -~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~-~~~~~ 306 (310)
..++...+++.+|.++..+|++++|+.+|++++++. +.+...+..++.++ ...|+
T Consensus 264 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 264 VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHHHTTTTC
T ss_pred hhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHHHHHhCc
Confidence 234556678889999999999999999999999954 34568888898877 55554
No 17
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=7.1e-18 Score=151.68 Aligned_cols=203 Identities=10% Similarity=-0.036 Sum_probs=163.6
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
+...+|...+.+++. .+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|++.|
T Consensus 35 ~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 112 (327)
T 3cv0_A 35 ANLAEAALAFEAVCQ--AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 112 (327)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356778899999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccceee--------------ee-hhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHH
Q 021611 182 RIDVAQNPNDTEESIWC--------------FL-CEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLV 243 (310)
Q Consensus 182 ~~Al~l~P~d~~~~~~~--------------~l-~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al 243 (310)
+++++.+|++....... .. .....|++++|+..+.++ .++....+......+...|++++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 192 (327)
T 3cv0_A 113 RAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAA 192 (327)
T ss_dssp HHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 99999999987643322 11 344678899999987763 3333333333333455578899988
Q ss_pred HHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 244 AAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 244 ~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
..+... ..++...++..+|.++...|++++|+.+|+++++.. +.+...+..+|.++..+|+|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 193 ANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHH
Confidence 877532 234556677889999999999999999999999943 346688899999999999874
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.71 E-value=5.3e-18 Score=162.24 Aligned_cols=201 Identities=14% Similarity=0.112 Sum_probs=134.5
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...+|...+.+++. .+|+ +.+++.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|+
T Consensus 252 ~~~~A~~~~~~~l~--~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIE--LFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHH--HCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHh--hCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34455555666665 6677 77788888888888888888888888888888877788888888888888888888888
Q ss_pred hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCCC--Ccch---
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSGR--ENEY--- 254 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~--~~d~--- 254 (310)
++++++|+++..+...+.+....|++++|+..+.++ .++....+......+...|++++|+..+.... .++.
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp HHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 888888877664333333334677788887776653 23222222222233444667777766654211 1111
Q ss_pred ---hHhhhhhhhhhhh---ccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 255 ---FYASLYAGLFYES---QKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 255 ---~~a~~~lG~~~~~---~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
..+++.+|.++.. +|++++|+.+|+++++.. +.+...+..+|.++..+|+|.
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHH
Confidence 2366678888888 888888888888888743 345677778888888888763
No 19
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.70 E-value=4.4e-18 Score=166.71 Aligned_cols=196 Identities=12% Similarity=-0.004 Sum_probs=154.5
Q ss_pred cchhhhhhhhcCCCCchhHHHHHHHhhhhheecccc-ccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDV-VGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~-~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
..+...+..... .+|+++.+|+.+|.++...|++ ++|++.|+++++++|+++.+|+.+|.++..+|++++|++.|++
T Consensus 85 ~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345555666666 7889999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCccceeeeehhh--hh---------cChHHHHHhHHHh---cCCChhhHHHHHHhhcCC--------CChHH
Q 021611 184 DVAQNPNDTEESIWCFLCEA--QL---------YGVDEARNRFLEV---GRDPRPVMREAYNMFKGG--------GDPEK 241 (310)
Q Consensus 184 Al~l~P~d~~~~~~~~l~~a--~l---------~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~--------~~~e~ 241 (310)
+++++|+ +. ++..++.. .+ |++++|+..+.++ .++....+......+... +++++
T Consensus 163 al~~~p~-~~--~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHCKN-KV--SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTCCC-HH--HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhCCC-HH--HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9999998 44 44444443 67 8899999988773 344333332222222222 66888
Q ss_pred HHHHhcCC--CCc---chhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 242 LVAAFSSG--REN---EYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 242 al~~~~~~--~~~---d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
|+..+... ..| +...+++.+|.++..+|++++|+.+|++|+++. +...+.+..++.++...|++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHH
Confidence 88777532 245 667788899999999999999999999999954 34567888898888877654
No 20
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.69 E-value=1.4e-17 Score=144.88 Aligned_cols=151 Identities=8% Similarity=-0.017 Sum_probs=96.8
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHH----------------hhhhheeccccccchhhhhhccccCcchhhHHHhhc
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIR----------------RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRG 165 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~----------------rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G 165 (310)
+.+.+|...|.+++. ++|+++.+|+. +|.++..+|++++|+..|+++++++|+++.+++++|
T Consensus 18 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 95 (208)
T 3urz_A 18 GQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA 95 (208)
T ss_dssp TCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 345566666666666 67777777776 777777777777777777777777777777777777
Q ss_pred cchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHH
Q 021611 166 LSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLV 243 (310)
Q Consensus 166 ~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al 243 (310)
.++..+|++++|++.|+++++++|+++.+ |..++.. ..+. ...+.+.
T Consensus 96 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a--~~~lg~~~~~~~~-----------------------------~~~~~~~ 144 (208)
T 3urz_A 96 EMQVCRGQEKDALRMYEKILQLEADNLAA--NIFLGNYYYLTAE-----------------------------QEKKKLE 144 (208)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHH-----------------------------HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHHhH-----------------------------HHHHHHH
Confidence 77777777777777777777777766553 3222222 1111 1112222
Q ss_pred HHhcCCC-CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611 244 AAFSSGR-ENEYFYASLYAGLFYESQKKADAAKLHILAACESP 285 (310)
Q Consensus 244 ~~~~~~~-~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~ 285 (310)
..+.... ..+...+++.+|..+..+|++++|+.+|++|+++.
T Consensus 145 ~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 145 TDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2332222 22334567789999999999999999999999954
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.69 E-value=2.2e-17 Score=159.40 Aligned_cols=200 Identities=17% Similarity=0.151 Sum_probs=149.4
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
..+|...+.+++. .+|+ +.+++.+|.++...|++++|++.|+++++++|+++.++..+|.++...|++++|++.|++
T Consensus 259 ~~~A~~~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESIN--LHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHH--HCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3566677777776 7888 888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCCC--Ccc-----
Q 021611 184 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSGR--ENE----- 253 (310)
Q Consensus 184 Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~--~~d----- 253 (310)
+++++|+++..+...+.+....|++++|+..+.++ .++....+......+...|++++|+..+.... .++
T Consensus 336 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 99999988764443333444788999998887663 33333333333334455778888777664211 111
Q ss_pred -hhHhhhhhhhhhhhc----------cchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 254 -YFYASLYAGLFYESQ----------KKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 254 -~~~a~~~lG~~~~~~----------G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
.....+.+|.++..+ |++++|+.+|+++++.. +.+.+.+..+|.++..+|+|.
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHH
Confidence 111234567788888 99999999999999843 346688889999999999864
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.68 E-value=1.7e-17 Score=150.42 Aligned_cols=204 Identities=13% Similarity=0.110 Sum_probs=161.0
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.+.+.+|...+.+++. .+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|++.
T Consensus 16 ~g~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 93 (359)
T 3ieg_A 16 AGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDD 93 (359)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHH
Confidence 3456789999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCC---CCCccceee------------eehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHH
Q 021611 181 FRIDVAQNP---NDTEESIWC------------FLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKL 242 (310)
Q Consensus 181 f~~Al~l~P---~d~~~~~~~------------~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~a 242 (310)
|+++++++| +++...... +......|++++|+..+.++ .++....+......+...|+++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 94 FKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 173 (359)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999 776533222 12233678999999988774 333333333333445557889998
Q ss_pred HHHhcC--CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHH------------HHHHHhhcccCCc
Q 021611 243 VAAFSS--GRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMA------------ALAKVHSLCRNWS 308 (310)
Q Consensus 243 l~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~------------~la~~~~~~~~~~ 308 (310)
+..+.. ...|+...+++.+|.++..+|++++|+..|+++++... .....+. .+|..+...|+|.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 251 (359)
T 3ieg_A 174 ISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ--DHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 251 (359)
T ss_dssp HHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 887752 33455667788899999999999999999999998432 3333322 3477788888763
No 23
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=6.1e-17 Score=141.58 Aligned_cols=189 Identities=12% Similarity=0.062 Sum_probs=143.6
Q ss_pred CCchhH-HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccce
Q 021611 118 NNNSRE-AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESI 196 (310)
Q Consensus 118 ~~~P~~-~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~ 196 (310)
+.+|.+ +.+|+.+|.++...|++++|++.|+++++++|++..+++.+|.++...|++++|++.|+++++++|+++..+.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 367876 8999999999999999999999999999999999999999999999999999999999999999998766433
Q ss_pred eeeehhhhhcChHHHHHhHHHhcC---CChh--hHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhcc
Q 021611 197 WCFLCEAQLYGVDEARNRFLEVGR---DPRP--VMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQK 269 (310)
Q Consensus 197 ~~~l~~a~l~~~~eA~~~l~~~~~---d~~~--~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G 269 (310)
..+.+....|++++|+..+.++.. .+.. .+......+...|++++++..+... ..++...+++.+|.++..+|
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 333334478889999998887644 2221 1122222344567888887776522 23444566778999999999
Q ss_pred chhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 270 KADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 270 ~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
++++|+.+|+++++.. +.+.+.+..++.++...|++.
T Consensus 190 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp CHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHH
Confidence 9999999999999843 345677788888888888753
No 24
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=6.3e-18 Score=148.91 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=94.8
Q ss_pred ccchhhhhhhhcCC--CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGG--NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 104 ~~~a~~~~~~ai~~--~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
..+|...+.+++.. ..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|++.|
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 100 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 100 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 44455555555441 0134555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCCh---------------------------------hh
Q 021611 182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPR---------------------------------PV 225 (310)
Q Consensus 182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~---------------------------------~~ 225 (310)
+++++++|+++..+...+.+....|++++|+..+.++ .++.. ..
T Consensus 101 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (275)
T 1xnf_A 101 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG 180 (275)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH
T ss_pred HHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHH
Confidence 5555555554443222222223445555555544432 11111 11
Q ss_pred HHHHHHhhcCCCChHHHHHHhcCC--CCc----chhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611 226 MREAYNMFKGGGDPEKLVAAFSSG--REN----EYFYASLYAGLFYESQKKADAAKLHILAACESP 285 (310)
Q Consensus 226 ~~~a~~l~~~~~~~e~al~~~~~~--~~~----d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~ 285 (310)
+..+ ..+...++.++++..+... ..+ +....++.+|.++..+|++++|+.+|+++++..
T Consensus 181 ~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 181 WNIV-EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHH-HHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHH-HHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 1111 1222334445555544321 111 225677889999999999999999999999954
No 25
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.67 E-value=3.5e-17 Score=154.77 Aligned_cols=200 Identities=12% Similarity=0.054 Sum_probs=130.8
Q ss_pred cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
+.....+..++. .+|+++.+|+.+|..++..|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++
T Consensus 9 ~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYF--QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccc--ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345555666666 788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CChhh-----HHHH------------HHhhcCCCChHHHHHHh
Q 021611 185 VAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPRPV-----MREA------------YNMFKGGGDPEKLVAAF 246 (310)
Q Consensus 185 l~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~~~-----~~~a------------~~l~~~~~~~e~al~~~ 246 (310)
++++|+++.++...+.+....|++++|+..+.++.. +|... +... ...+...|++++|+..+
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888887765433333334467888888887776432 22211 1111 11233356777777666
Q ss_pred cCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 247 SSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 247 ~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
... ..++...+++.+|.++..+|++++|+..|+++++.. +.+...+..+|.++..+|+|.
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence 421 234445566778888888888888888888888732 345677778888888887763
No 26
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=4.9e-17 Score=138.39 Aligned_cols=188 Identities=13% Similarity=-0.004 Sum_probs=145.1
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC 198 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~ 198 (310)
.+|+++.+|+.+|.++...|++++|++.|+++++++|++..+++.+|.++...|++++|++.|+++++++|+++..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999887644333
Q ss_pred eehhhhh-cChHHHHHhHHHhcC---CCh--hhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccc
Q 021611 199 FLCEAQL-YGVDEARNRFLEVGR---DPR--PVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKK 270 (310)
Q Consensus 199 ~l~~a~l-~~~~eA~~~l~~~~~---d~~--~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~ 270 (310)
+.+.... |++++|+..+.++.. .+. ..+......+...|++++++..+... ..++...+++.+|.++..+|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 3344478 899999998887544 221 12222223445578888887777522 234445677789999999999
Q ss_pred hhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 271 ADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 271 ~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
+++|+.+|+++++... ..+...+..++.++...|++
T Consensus 163 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVE-VLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCcH
Confidence 9999999999998432 14557777778887777764
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.66 E-value=1.6e-17 Score=146.65 Aligned_cols=203 Identities=10% Similarity=-0.036 Sum_probs=157.6
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhh----HHHhhccchhhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA----YLWQRGLSLYYLDRFEEG 177 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~----a~~~~G~a~~~lg~~~eA 177 (310)
+.+.+|...+.+++. .+|+++.+++.+|.++...|++++|++.|+++++ .|.++. ++..+|.++..+|++++|
T Consensus 17 ~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A 93 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEA--KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLA 93 (272)
T ss_dssp TCHHHHHHHHHHHHH--TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHH
Confidence 356779999999998 9999999999999999999999999999999999 554444 489999999999999999
Q ss_pred hhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC---CChhhHHHHH-HhhcCCCChHHHHHHhcCC--CC
Q 021611 178 AEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR---DPRPVMREAY-NMFKGGGDPEKLVAAFSSG--RE 251 (310)
Q Consensus 178 ~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~---d~~~~~~~a~-~l~~~~~~~e~al~~~~~~--~~ 251 (310)
++.|+++++++|+++..+...+.+....|++++|+..+.++.. +....+.... ..+. .+++++|+..+... ..
T Consensus 94 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~ 172 (272)
T 3u4t_A 94 IQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSSFVKVLELK 172 (272)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC
Confidence 9999999999999887544333444478999999999988543 2222222222 3333 34888888877532 34
Q ss_pred cchhHhhhhhhhhhhhccc---hhhHHHHHHHhhcCCCCCCC------hHHHHHHHHHhhcccCCc
Q 021611 252 NEYFYASLYAGLFYESQKK---ADAAKLHILAACESPYGQRS------DDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 252 ~d~~~a~~~lG~~~~~~G~---~d~A~~~~~kAl~~~~~~~s------~~~~~~la~~~~~~~~~~ 308 (310)
|+...+++.+|.++..+|+ +++|+.+|++++++.....+ .+.+..+|.++...|++.
T Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 173 PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 5556788889999999999 99999999999984211111 146677899999998863
No 28
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.66 E-value=1.7e-17 Score=139.41 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=100.7
Q ss_pred hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
.-+.+.+++. ++|+++.+++.+|.+++.+|++++|+..|+++++++|+++.+|+++|.++..+|+|++|+++|+++++
T Consensus 21 ~~~~l~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 21 SGATLKDINA--IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp TSCCTGGGCC--SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 3456677787 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 187 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 187 l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
++|+++.+++..+.+..++|++++|+..+.++
T Consensus 99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999986665656666899999999998874
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.66 E-value=2.1e-17 Score=151.94 Aligned_cols=205 Identities=14% Similarity=0.060 Sum_probs=162.4
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHH----------------hh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLW----------------QR 164 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~----------------~~ 164 (310)
.+...+|...+.+++. ++|+++.+++.+|.++...|++++|++.|+++++++|++...+. ..
T Consensus 111 ~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 111 NEQELLAISALRRCLE--LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTT
T ss_pred CcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHH
Confidence 3456778899999998 99999999999999999999999999999999999999887776 56
Q ss_pred ccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh--hhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCCh
Q 021611 165 GLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE--AQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDP 239 (310)
Q Consensus 165 G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~--a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~ 239 (310)
|.++ ..|++++|++.|+++++++|++..+..+..++. ...|++++|+..+.++ .++....+......+...|++
T Consensus 189 ~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 189 GSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH
Confidence 6666 999999999999999999999433334544444 3789999999988763 343333333333445557889
Q ss_pred HHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCC---------CChHHHHHHHHHhhcccCCc
Q 021611 240 EKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQ---------RSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 240 e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~---------~s~~~~~~la~~~~~~~~~~ 308 (310)
++|+..+... ..|+...+++.+|.++..+|++++|+.+|++++++.... .....+..++.++..+|++.
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9988877532 245566778889999999999999999999999853221 12578889999999999875
No 30
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=9.2e-17 Score=138.86 Aligned_cols=184 Identities=12% Similarity=0.020 Sum_probs=130.6
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE 202 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~ 202 (310)
.+.+|+.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|++.|+++++++|+++..+...+.+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999998876444333344
Q ss_pred hhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHH
Q 021611 203 AQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLH 277 (310)
Q Consensus 203 a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~ 277 (310)
...|++++|+..+.++ .++....+......+...|++++++..+... ..++...+++.+|.++...|++++|+..
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4789999999988764 3333333333333455578899888777532 2344556777899999999999999999
Q ss_pred HHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 278 ILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 278 ~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
|+++++.. +.+...+..++.++...|++.
T Consensus 182 ~~~~~~~~--~~~~~~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 182 FAAVTEQD--PGHADAFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHhC--cccHHHHHHHHHHHHHccCHH
Confidence 99999943 345688889999999999875
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=3.9e-17 Score=146.78 Aligned_cols=205 Identities=10% Similarity=0.032 Sum_probs=158.6
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh--------------cc-
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR--------------GL- 166 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~--------------G~- 166 (310)
+...+|...+.+++. ++|+++.++..+|.++...|++++|+..|+++++++|++...+..+ |.
T Consensus 69 ~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 69 EKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred CCHHHHHHHHHHHHh--cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 356678899999998 8999999999999999999999999999999999999999888887 77
Q ss_pred chhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHH
Q 021611 167 SLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLV 243 (310)
Q Consensus 167 a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al 243 (310)
++...|++++|++.|+++++.+|+++..+...+.+....|++++|+..+.++ .++....+......+...|++++|+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999999999988764333333344789999999988764 3333333333333455578899988
Q ss_pred HHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCC----C------ChHHHHHHHHHhhcccCCc
Q 021611 244 AAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQ----R------SDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 244 ~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~----~------s~~~~~~la~~~~~~~~~~ 308 (310)
..+... ..++...+++.+|.++..+|++++|+.+|+++++..... . ....+..++.++..+|++.
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 777532 234556678889999999999999999999999843210 0 4577789999999998863
No 32
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.66 E-value=8.3e-17 Score=145.92 Aligned_cols=201 Identities=13% Similarity=0.068 Sum_probs=161.0
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.+...+|...+.+++. .+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|++.
T Consensus 133 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILE--VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3356778999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCccceee------------eehhhhhcChHHHHHhHHHh---cCCChhhHHH----HHHhhcCCCChHH
Q 021611 181 FRIDVAQNPNDTEESIWC------------FLCEAQLYGVDEARNRFLEV---GRDPRPVMRE----AYNMFKGGGDPEK 241 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~------------~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~----a~~l~~~~~~~e~ 241 (310)
|+++++++|++.....+. +......|++++|...+.++ .++....... ....+...|++++
T Consensus 211 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 211 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 999999999987643322 12233678999999988764 3332222111 2223445788999
Q ss_pred HHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611 242 LVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCR 305 (310)
Q Consensus 242 al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~ 305 (310)
|+..+... ..|+...+++.+|.++..+|++++|+.+|++++++. +.+.+....|+.++...+
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHH
Confidence 88877532 245566788889999999999999999999999954 356677778888776554
No 33
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.66 E-value=2.9e-17 Score=155.30 Aligned_cols=204 Identities=14% Similarity=0.129 Sum_probs=160.7
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.+...+|...|++++. .+|+++.+|+.+|.++...|++++|+..|+++++++|++..+++.+|.++..+|++++|++.
T Consensus 39 ~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 39 AGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3467789999999998 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCC---ccceee------------eehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHH
Q 021611 181 FRIDVAQNPNDT---EESIWC------------FLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKL 242 (310)
Q Consensus 181 f~~Al~l~P~d~---~~~~~~------------~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~a 242 (310)
|+++++++|++. ..+... +......|++++|+..+.++ .++....+......+...|++++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 196 (450)
T 2y4t_A 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA 196 (450)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGG
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHH
Confidence 999999999876 422111 11233678999999988764 333333333333445557888888
Q ss_pred HHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHH------------HHHhhcccCCc
Q 021611 243 VAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAAL------------AKVHSLCRNWS 308 (310)
Q Consensus 243 l~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~l------------a~~~~~~~~~~ 308 (310)
+..+... ..++...+++.+|.++...|++++|+.+|+++++.. +.+...+..+ +.++...|+|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (450)
T 2y4t_A 197 ISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 274 (450)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 8777532 234556778889999999999999999999999843 2344554444 88888888763
No 34
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.65 E-value=1.1e-16 Score=157.15 Aligned_cols=203 Identities=12% Similarity=0.004 Sum_probs=159.3
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
+...++..++.+++. .+|+++.+|..+|.++...|++++|++.|+++++++|++..+|..+|.++...|++++|++.|
T Consensus 353 g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 353 GEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp TCHHHHHHHHHHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345567777777776 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--------CC
Q 021611 182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--------GR 250 (310)
Q Consensus 182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--------~~ 250 (310)
+++++++|++...+.....+..+.|++++|...+.++ .++....+......+...|++++|+..+.. ..
T Consensus 431 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 431 TTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 9999999988764333333344789999999988764 333223333333345557888888777642 22
Q ss_pred Ccch-hHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 251 ENEY-FYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 251 ~~d~-~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
.++. ...+..+|.++...|++++|+..|+++++.. +.+...+..++.++...|+|.
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHH
Confidence 3332 5567789999999999999999999999843 346688889999999999885
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.4e-17 Score=142.26 Aligned_cols=194 Identities=10% Similarity=0.037 Sum_probs=144.9
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch-------hhHHHhhccchhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-------KAYLWQRGLSLYYLDRF 174 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-------~~a~~~~G~a~~~lg~~ 174 (310)
+.+.+|...+.+++. .+ +++.+++.+|.++...|++++|+..|+++++++|++ ..+++.+|.++..+|++
T Consensus 19 ~~~~~A~~~~~~a~~--~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (258)
T 3uq3_A 19 RQFDEAIEHYNKAWE--LH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL 95 (258)
T ss_dssp TCHHHHHHHHHHHHH--HS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccHHHHHHHHHHHHH--hh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence 356678888888887 66 888999999999999999999999999999999987 68899999999999999
Q ss_pred hhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC-CCh--hhHHHHHHhhcCCCChHHHHHHhcCC--
Q 021611 175 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR-DPR--PVMREAYNMFKGGGDPEKLVAAFSSG-- 249 (310)
Q Consensus 175 ~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~-d~~--~~~~~a~~l~~~~~~~e~al~~~~~~-- 249 (310)
++|++.|+++++++|+. -....+|++++|...+.++.. +|. ..+......+...|++++++..+...
T Consensus 96 ~~A~~~~~~a~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 167 (258)
T 3uq3_A 96 KKTIEYYQKSLTEHRTA--------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK 167 (258)
T ss_dssp HHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchh--------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999988751 123356777777777766432 222 11222222344467788877766522
Q ss_pred CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 250 RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 250 ~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
..++...+++.+|.++..+|++++|+.+|+++++.. +...+.+..+|.++..+|+|.
T Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHH
Confidence 234445667778888888888888888888888843 345677788888888888763
No 36
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=1.1e-16 Score=147.00 Aligned_cols=200 Identities=12% Similarity=0.051 Sum_probs=157.2
Q ss_pred cchhhhhhhhcCCCCchhHHHHHHHhhhhhee-------cccc-------ccchhhhhhccc-cCcchhhHHHhhccchh
Q 021611 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFR-------QGDV-------VGSVAEFDKAIE-LDPRQKAYLWQRGLSLY 169 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~-------~g~~-------~eAl~~f~kAl~-l~P~~~~a~~~~G~a~~ 169 (310)
..+...|.+++. .+|+++.+|+.+|..+.. .|++ ++|+..|++|++ ++|++..+|..+|.++.
T Consensus 33 ~~a~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 467789999998 999999999999999874 5887 999999999999 79999999999999999
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcC---CChhhH-HHHHHhhcCCCChHHHH
Q 021611 170 YLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGR---DPRPVM-REAYNMFKGGGDPEKLV 243 (310)
Q Consensus 170 ~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~---d~~~~~-~~a~~l~~~~~~~e~al 243 (310)
..|++++|++.|+++++++|+++.. +|..++.. +.|++++|+..+.++.. .....+ ..+...+...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTL-VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHH-HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999988751 45554443 68999999999888543 222222 12222222367888888
Q ss_pred HHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC-CCC-CChHHHHHHHHHhhcccCC
Q 021611 244 AAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESP-YGQ-RSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 244 ~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~-~~~-~s~~~~~~la~~~~~~~~~ 307 (310)
+.+... ..|+...++..+|.++..+|++++|+..|++|++.. .++ .+...+..++.++..+|++
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 877633 234556677778899999999999999999999952 222 3567777888888888875
No 37
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.64 E-value=2e-17 Score=169.32 Aligned_cols=177 Identities=13% Similarity=0.091 Sum_probs=116.0
Q ss_pred cccchhhhhhhhc--------CCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhh
Q 021611 103 FIPSVSGIWDALT--------GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRF 174 (310)
Q Consensus 103 ~~~~a~~~~~~ai--------~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~ 174 (310)
...+|...+++++ . .+|+++.+++.+|.++..+|++++|++.|+++++++|+++.+|+++|.++..+|++
T Consensus 406 ~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 406 QPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp CHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 4556778888888 5 88999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--
Q 021611 175 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG-- 249 (310)
Q Consensus 175 ~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~-- 249 (310)
++|++.|+++++++|+++.++...+.+..++|++++ +..+.++ .++....+......+...|++++|++.+...
T Consensus 484 ~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 484 DSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 999999999999999998755444444446777777 6666542 2222222212222223344444444444422
Q ss_pred CCcchhHhhhhhhhhhhhccchhhH-HHHHHHhh
Q 021611 250 RENEYFYASLYAGLFYESQKKADAA-KLHILAAC 282 (310)
Q Consensus 250 ~~~d~~~a~~~lG~~~~~~G~~d~A-~~~~~kAl 282 (310)
.+|+...+++.+|.++...|+.+++ ...+++|+
T Consensus 563 l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 563 TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp TSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 2333344444444444444443333 33333333
No 38
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.63 E-value=3.4e-16 Score=139.25 Aligned_cols=188 Identities=10% Similarity=-0.043 Sum_probs=132.7
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc-c
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE-E 194 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~-~ 194 (310)
++|+++..++.+|..++..|++++|+..|+++++.+|++ +.+++.+|.+++.+|+|++|++.|++++++.|+++. .
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 678888899999999999999999999999999998888 888899999999999999999999999999887653 2
Q ss_pred ceeeeehh--hh--------hcChHHHHHhHHHh---cCCChhhH-----------------HHHHHhhcCCCChHHHHH
Q 021611 195 SIWCFLCE--AQ--------LYGVDEARNRFLEV---GRDPRPVM-----------------REAYNMFKGGGDPEKLVA 244 (310)
Q Consensus 195 ~~~~~l~~--a~--------l~~~~eA~~~l~~~---~~d~~~~~-----------------~~a~~l~~~~~~~e~al~ 244 (310)
.++..++. .. .|++++|+..+.++ .|+..... ......+...|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 23333333 35 78888888887763 23221111 112233445788888887
Q ss_pred HhcCC----C-CcchhHhhhhhhhhhhhc----------cchhhHHHHHHHhhcCCCCC-CChHHHHHHHHHhhcccC
Q 021611 245 AFSSG----R-ENEYFYASLYAGLFYESQ----------KKADAAKLHILAACESPYGQ-RSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 245 ~~~~~----~-~~d~~~a~~~lG~~~~~~----------G~~d~A~~~~~kAl~~~~~~-~s~~~~~~la~~~~~~~~ 306 (310)
.+... + .+....+++.+|.++..+ |++++|+.+|+++++..... ........++.++...|+
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 77521 2 222556788899999877 99999999999999832211 112344455666655443
No 39
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.63 E-value=6.4e-17 Score=134.09 Aligned_cols=146 Identities=9% Similarity=-0.047 Sum_probs=84.0
Q ss_pred hhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChH
Q 021611 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVD 209 (310)
Q Consensus 130 rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~ 209 (310)
+|.++..+|++++|++.|.+++..+|+++.+++.+|.+|+.+|+|++|++.|+++++++|+++.++...+.+..++|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 55566666666666666666666666666666666666666666666666666666666665553333333333455555
Q ss_pred HHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHH-HHHhhcCCCCC
Q 021611 210 EARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLH-ILAACESPYGQ 288 (310)
Q Consensus 210 eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~-~~kAl~~~~~~ 288 (310)
+|+..+.++.. .+|+...+++.+|.++..+|++++|... +++|+++. +
T Consensus 83 ~A~~~~~~al~-----------------------------~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P 131 (150)
T 4ga2_A 83 KAVECYRRSVE-----------------------------LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--P 131 (150)
T ss_dssp HHHHHHHHHHH-----------------------------HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--T
T ss_pred HHHHHHHHHHH-----------------------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--c
Confidence 55554443100 1123334556788888888888876665 58888854 3
Q ss_pred CChHHHHHHHHHhhcccC
Q 021611 289 RSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 289 ~s~~~~~~la~~~~~~~~ 306 (310)
.++..+...+.++...|+
T Consensus 132 ~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 132 GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 456676677887777764
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=1.5e-16 Score=139.96 Aligned_cols=157 Identities=16% Similarity=0.055 Sum_probs=113.1
Q ss_pred HHHHhhhhheeccccccchhhhhhcccc----CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611 126 VAIRRGMLLFRQGDVVGSVAEFDKAIEL----DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC 201 (310)
Q Consensus 126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l----~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~ 201 (310)
..+.++..+...|++++|+..|+++++. +|.++.+++.+|.++...|++++|++.|+++++++|+++..+...+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 86 (275)
T 1xnf_A 7 KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY 86 (275)
T ss_dssp CGGGSCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cCcceeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 4456777888899999999999999998 467899999999999999999999999999999999987754433334
Q ss_pred hhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHH
Q 021611 202 EAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKL 276 (310)
Q Consensus 202 ~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~ 276 (310)
....|++++|+..+.++ .++....+......+...|++++|+..+... ..|+......+.+.+ ..+|++++|+.
T Consensus 87 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~ 165 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKE 165 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHH
Confidence 44789999999988774 3333333333333455578888887777521 122223333333333 45577777777
Q ss_pred HHHHhhc
Q 021611 277 HILAACE 283 (310)
Q Consensus 277 ~~~kAl~ 283 (310)
.|++++.
T Consensus 166 ~~~~~~~ 172 (275)
T 1xnf_A 166 VLKQHFE 172 (275)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7766665
No 41
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.62 E-value=2.2e-16 Score=152.43 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=76.2
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.+.+.+|...|.+++. .+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|++.
T Consensus 38 ~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp TTCCC-CHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3366789999999998 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhccCCCCC
Q 021611 181 FRIDVAQNPNDT 192 (310)
Q Consensus 181 f~~Al~l~P~d~ 192 (310)
|+ ++.++|+..
T Consensus 116 ~~-~~~~~~~~~ 126 (537)
T 3fp2_A 116 LS-VLSLNGDFD 126 (537)
T ss_dssp HH-HHC------
T ss_pred HH-HHhcCCCCC
Confidence 85 777776644
No 42
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.62 E-value=1.6e-16 Score=155.92 Aligned_cols=200 Identities=11% Similarity=-0.013 Sum_probs=162.1
Q ss_pred cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~ 178 (310)
.+.+...+|...|.+++. ++|+++.+|..+|.++...|++++|++.|+++++++|++..++..+|.++...|++++|+
T Consensus 384 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSST--MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 334467788888998888 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh-------cCCCh---hhHHHHHHhhcCCCChHHHHHHhcC
Q 021611 179 EQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV-------GRDPR---PVMREAYNMFKGGGDPEKLVAAFSS 248 (310)
Q Consensus 179 ~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~-------~~d~~---~~~~~a~~l~~~~~~~e~al~~~~~ 248 (310)
+.|+++++++|+++..+.....+..+.|++++|+..+.++ ..+|. ..+......+...|++++|+..+..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999998764333333344789999999988774 22343 2233333445568899998887753
Q ss_pred C--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhh
Q 021611 249 G--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHS 302 (310)
Q Consensus 249 ~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~ 302 (310)
. ..|+...++..+|.+|...|++++|+.+|++++++. +.+...+..|+.++.
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS--PNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTC
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHh
Confidence 2 235556778889999999999999999999999954 356688888887764
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=4.2e-16 Score=136.24 Aligned_cols=181 Identities=14% Similarity=0.017 Sum_probs=146.0
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
+...+|...+.+++. .+|+++.+++.+|.++...|++++|++.|+++++++|++..++..+|.++...|++++|++.|
T Consensus 51 ~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 128 (252)
T 2ho1_A 51 GNTEQAKVPLRKALE--IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRL 128 (252)
T ss_dssp TCTGGGHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 356778899999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc--cCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcch
Q 021611 182 RIDVA--QNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEY 254 (310)
Q Consensus 182 ~~Al~--l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~ 254 (310)
+++++ .+|+++..+...+.+....|++++|...+.++ .++....+......+...|++++|+..+.. ...++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (252)
T 2ho1_A 129 LEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208 (252)
T ss_dssp HHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 99999 67766553333333344789999999988774 333333333333345557889988877752 234455
Q ss_pred hHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 255 FYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 255 ~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
..++..++.++..+|++++|..+++++++.
T Consensus 209 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 209 ARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 566778999999999999999999999994
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=1.6e-15 Score=133.79 Aligned_cols=181 Identities=11% Similarity=0.039 Sum_probs=141.5
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccc--eeeee
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEES--IWCFL 200 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~--~~~~l 200 (310)
++++++.+|.+++..|++++|+..|+++++++|+++.+++.+|.++..+|++++|++.|+++++ .|+++... .+..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999 56555421 13333
Q ss_pred h--hhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhh
Q 021611 201 C--EAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADA 273 (310)
Q Consensus 201 ~--~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~ 273 (310)
+ ....|++++|+..+.++ .++....+......+...|++++|+..+.. ...+....+++.+|......+++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3 44789999999988764 344333443444455568899999998863 3356677788889943444569999
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 274 AKLHILAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 274 A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
|+.+|+++++.. +.+...+..++.++..+|+
T Consensus 161 A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 161 ADSSFVKVLELK--PNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HHHHHHHHHHHS--TTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhC--ccchHHHHHHHHHHHHcCc
Confidence 999999999944 3456788889999988887
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=1.4e-16 Score=133.82 Aligned_cols=163 Identities=12% Similarity=0.088 Sum_probs=133.7
Q ss_pred chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
+.+.+.+|...|.+++. ++|+++.+|+.+|.++..+|++++|+..+.+++..+|+++.++..+|.++...+++++|++
T Consensus 17 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 94 (184)
T 3vtx_A 17 TKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAID 94 (184)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 44567889999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhH
Q 021611 180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFY 256 (310)
Q Consensus 180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~ 256 (310)
.+.++++++|+++......+.+..++|++++|+..+.++ .|+....+......+...|++++|+..+......++..
T Consensus 95 ~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 95 ALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 999999999999875554444555889999999988763 44443433333345556889999998887544444445
Q ss_pred hhhhhhhh
Q 021611 257 ASLYAGLF 264 (310)
Q Consensus 257 a~~~lG~~ 264 (310)
+.+.+|++
T Consensus 175 a~~~lali 182 (184)
T 3vtx_A 175 AKYELALV 182 (184)
T ss_dssp HHHCSCCS
T ss_pred HHHHHHhh
Confidence 66677754
No 46
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.59 E-value=2.3e-16 Score=130.75 Aligned_cols=113 Identities=11% Similarity=0.023 Sum_probs=98.0
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
++....+...+.+++. .+|+++.+++.+|.+|+.+|++++|++.|+++|+++|+++.+|+++|.++..+|++++|+..
T Consensus 10 ~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 3356678888888888 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCccceeeeehhhhhcChHHHHHhH
Q 021611 181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 215 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l 215 (310)
|+++++++|+++.++...+.+..+.|++++|...+
T Consensus 88 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~ 122 (150)
T 4ga2_A 88 YRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYW 122 (150)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99999999999875443333344677777665543
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=2e-16 Score=154.97 Aligned_cols=176 Identities=12% Similarity=0.036 Sum_probs=144.5
Q ss_pred cc-cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhh---------h
Q 021611 103 FI-PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL---------D 172 (310)
Q Consensus 103 ~~-~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l---------g 172 (310)
.+ .+|...|.+++. ++|+++.+|+.+|.++..+|++++|++.|+++++++|+ ..++.++|.++..+ |
T Consensus 117 ~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g 193 (474)
T 4abn_A 117 DYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSR 193 (474)
T ss_dssp SCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHH
T ss_pred ccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhh
Confidence 45 789999999998 99999999999999999999999999999999999999 69999999999999 9
Q ss_pred hhhhhhhhhhhhhccCCCCCccceeeeehhhhh--------cChHHHHHhHHHhcC-CC-----hhhHHHHHHhhcCCCC
Q 021611 173 RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL--------YGVDEARNRFLEVGR-DP-----RPVMREAYNMFKGGGD 238 (310)
Q Consensus 173 ~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l--------~~~~eA~~~l~~~~~-d~-----~~~~~~a~~l~~~~~~ 238 (310)
++++|++.|+++++++|+++..+...+.+...+ |++++|+..+.++.. +| ...+......+...|+
T Consensus 194 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 194 HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273 (474)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence 999999999999999999987443333334466 889999999877432 33 2233333344555789
Q ss_pred hHHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHh
Q 021611 239 PEKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAA 281 (310)
Q Consensus 239 ~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kA 281 (310)
+++|+..+... ..|+...++..+|.++..+|++++|+..+.+.
T Consensus 274 ~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99998887632 34566677888999999999999999887665
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.5e-16 Score=138.07 Aligned_cols=179 Identities=12% Similarity=0.079 Sum_probs=142.7
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc-----cc
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE-----ES 195 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~-----~~ 195 (310)
|+.+.+|+.+|.+++..|++++|+..|+++++++ +++.+++.+|.++..+|++++|++.|+++++++|++.. ..
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 5778999999999999999999999999999999 88999999999999999999999999999999987621 12
Q ss_pred eeeeehh--hhhcChHHHHHhHHHhcC-CChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccc
Q 021611 196 IWCFLCE--AQLYGVDEARNRFLEVGR-DPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKK 270 (310)
Q Consensus 196 ~~~~l~~--a~l~~~~eA~~~l~~~~~-d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~ 270 (310)
.+..++. ..+|++++|+..+.++.. ++.. .. +...+++++++..+.. ...++...+++.+|.++..+|+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA---DI---LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH---HH---HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchh---HH---HHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 3444443 478999999999887432 2221 11 1223456666666542 2345567778889999999999
Q ss_pred hhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 271 ADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 271 ~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
+++|+.+|+++++.. +.+...+..+|.++..+|+|.
T Consensus 155 ~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~ 190 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFP 190 (258)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHH
Confidence 999999999999943 346788899999999999874
No 49
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.4e-15 Score=145.45 Aligned_cols=192 Identities=14% Similarity=0.088 Sum_probs=152.8
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...+|...+.+++. .+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..|+
T Consensus 285 ~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 285 DSTEYYNYFDKALK--LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp CCTTGGGHHHHHHT--TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh--cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45667788888887 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChh------hHHHHHHhhcC---CCChHHHHHHhcCC-
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRP------VMREAYNMFKG---GGDPEKLVAAFSSG- 249 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~------~~~~a~~l~~~---~~~~e~al~~~~~~- 249 (310)
++++.+|+++..+...+.+....|++++|...+.++ .++... .+......+.. .|++++|+..+...
T Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 999999998875444444445789999999988764 222211 22233334445 78888888777532
Q ss_pred -CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHH
Q 021611 250 -RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALA 298 (310)
Q Consensus 250 -~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la 298 (310)
..++...+++.+|.++..+|++++|+.+|++++++. +.+.+.+..+.
T Consensus 443 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 490 (514)
T 2gw1_A 443 KLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA--RTMEEKLQAIT 490 (514)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccHHHHHHHH
Confidence 234556678889999999999999999999999954 34445555443
No 50
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.58 E-value=5.8e-16 Score=124.89 Aligned_cols=122 Identities=17% Similarity=0.194 Sum_probs=102.2
Q ss_pred chhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeee
Q 021611 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCF 199 (310)
Q Consensus 120 ~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~ 199 (310)
.++.+.++.++|.+++.+|+|++|++.|++||+++|+++.+|.++|.++..+|+|++|+++|+++++++|++...+.
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--- 80 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK--- 80 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH---
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH---
Confidence 45778999999999999999999999999999999999999999999999999999999999999999997653100
Q ss_pred ehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHH
Q 021611 200 LCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHIL 279 (310)
Q Consensus 200 l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~ 279 (310)
....+++.+|.++..+|++++|+.+|+
T Consensus 81 -----------------------------------------------------~~a~~~~~lg~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 81 -----------------------------------------------------LIAKAMSRAGNAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 011244569999999999999999999
Q ss_pred HhhcCCCCCCChHHHHHHHHH
Q 021611 280 AACESPYGQRSDDYMAALAKV 300 (310)
Q Consensus 280 kAl~~~~~~~s~~~~~~la~~ 300 (310)
++++.. .+++....|..+
T Consensus 108 kal~~~---~~~~~~~~l~~l 125 (127)
T 4gcn_A 108 RSLSEF---RDPELVKKVKEL 125 (127)
T ss_dssp HHHHHS---CCHHHHHHHHHH
T ss_pred HHHhhC---cCHHHHHHHHHh
Confidence 999833 245665555443
No 51
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.57 E-value=9.1e-16 Score=129.32 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=64.4
Q ss_pred chhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 120 ~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
||...+.++.+|..+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++| ++.
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~ 74 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS 74 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH
Confidence 5666778899999999999999999999999999999999999999999999999999999999999999 664
No 52
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.57 E-value=4.1e-16 Score=161.33 Aligned_cols=146 Identities=11% Similarity=0.040 Sum_probs=122.1
Q ss_pred cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~ 178 (310)
.+.+...+|...|.+++. ++|+++.+|+++|.++..+|++++|++.|++||+++|++..+|+++|.++..+|++++|+
T Consensus 20 ~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~ 97 (723)
T 4gyw_A 20 REQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGAL 97 (723)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344467789999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH---hcCCChhhHHHHHHhhcCCCChHHHHHHh
Q 021611 179 EQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE---VGRDPRPVMREAYNMFKGGGDPEKLVAAF 246 (310)
Q Consensus 179 ~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~---~~~d~~~~~~~a~~l~~~~~~~e~al~~~ 246 (310)
+.|+++++++|++++++...+.+...+|++++|++.+.+ +.++....+......+...++.+++.+.+
T Consensus 98 ~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 98 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHH
Confidence 999999999999988655555555589999999998876 45554444444444555567766655444
No 53
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=3.5e-15 Score=122.53 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=121.7
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC 201 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~ 201 (310)
.....++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|++.|+++++++|+++..+...+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45678888999999999999999999999999998888889999999999999999999999999988877643333333
Q ss_pred hhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHH
Q 021611 202 EAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKL 276 (310)
Q Consensus 202 ~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~ 276 (310)
....|++++|...+.++ .++....+......+...|++++++..+... ..++...+++.+|.++..+|++++|..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 44678888888877663 2332222222223344467788777666421 234445677789999999999999999
Q ss_pred HHHHhhcC
Q 021611 277 HILAACES 284 (310)
Q Consensus 277 ~~~kAl~~ 284 (310)
+++++++.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99999884
No 54
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.56 E-value=1.6e-16 Score=128.28 Aligned_cols=94 Identities=12% Similarity=0.209 Sum_probs=88.7
Q ss_pred cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~ 178 (310)
-+.+.+.+|...|++++. ++|+++.+|+++|.++..+|++++|+++|++||+++|+++.+|+++|.++..+|++++|+
T Consensus 24 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~ 101 (126)
T 4gco_A 24 FKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQ 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHH
Confidence 344567789999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCcc
Q 021611 179 EQFRIDVAQNPNDTEE 194 (310)
Q Consensus 179 ~~f~~Al~l~P~d~~~ 194 (310)
++|+++++++|+++++
T Consensus 102 ~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 102 RAYEDALQVDPSNEEA 117 (126)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHCcCCHHH
Confidence 9999999999999763
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=3.5e-15 Score=133.05 Aligned_cols=195 Identities=13% Similarity=0.080 Sum_probs=149.6
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhhee----ccccccchhhhhhccccCcchhhHHHhhccchhh----hhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY----LDR 173 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~----~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~----lg~ 173 (310)
+...+|...|.+++. |+++.+++.+|.++.. .|++++|+..|+++++++ ++.+++++|.++.. .++
T Consensus 20 ~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~ 93 (273)
T 1ouv_A 20 KDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQN 93 (273)
T ss_dssp TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccC
Confidence 345667777777764 7778999999999999 999999999999999986 68899999999999 999
Q ss_pred hhhhhhhhhhhhccCCCCCccceeeeehhhh----hcChHHHHHhHHHhcC-CChhhHHHHHHhhcC----CCChHHHHH
Q 021611 174 FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEVGR-DPRPVMREAYNMFKG----GGDPEKLVA 244 (310)
Q Consensus 174 ~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~----l~~~~eA~~~l~~~~~-d~~~~~~~a~~l~~~----~~~~e~al~ 244 (310)
+++|++.|+++++.+ ++.+....+..... .+++++|+..+.++.. ++...+.....++.. .+++++++.
T Consensus 94 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 94 TNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALA 171 (273)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999999999985 45533333333335 7889999999887533 333332222223332 678888888
Q ss_pred HhcCCCCcchhHhhhhhhhhhhh----ccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhc----ccCCc
Q 021611 245 AFSSGRENEYFYASLYAGLFYES----QKKADAAKLHILAACESPYGQRSDDYMAALAKVHSL----CRNWS 308 (310)
Q Consensus 245 ~~~~~~~~d~~~a~~~lG~~~~~----~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~----~~~~~ 308 (310)
.+......+...+++.+|.+|.. .|++++|+.+|+++++.. ..+.+.+||.++.. .|++.
T Consensus 172 ~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~~~~g~~~~~~~~ 239 (273)
T 1ouv_A 172 SYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLGAMQYNGEGVTRNEK 239 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTSSSSCCST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCcccCHH
Confidence 87644333456778889999999 999999999999999943 35788899999998 77764
No 56
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.54 E-value=1.3e-15 Score=126.10 Aligned_cols=109 Identities=11% Similarity=0.117 Sum_probs=99.5
Q ss_pred hhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611 108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 108 ~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l 187 (310)
...+.+++. ++|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|++.|++++++
T Consensus 7 ~~~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 356778888 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 188 NPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 188 ~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
+|+++.++...+.+...+|++++|+..+.++
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999886555555556899999999988763
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=2.4e-15 Score=127.84 Aligned_cols=180 Identities=13% Similarity=-0.002 Sum_probs=140.3
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhh-hhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL-DRFEEGAEQ 180 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l-g~~~eA~~~ 180 (310)
+...+|...+.+++. .+|+++.+++.+|.++...|++++|++.|+++++++|++..++..+|.++... |++++|++.
T Consensus 22 ~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 99 (225)
T 2vq2_A 22 QDYRQATASIEDALK--SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAY 99 (225)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHH
Confidence 356778899999998 89999999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhhhhc--cCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCc-
Q 021611 181 FRIDVA--QNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--REN- 252 (310)
Q Consensus 181 f~~Al~--l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~- 252 (310)
|+++++ .+|++...+...+.+....|++++|+..+.++ .++....+......+...|++++|...+... ..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 179 (225)
T 2vq2_A 100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179 (225)
T ss_dssp HHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999 44443343222333344789999999988763 3333333323333444467888887777522 223
Q ss_pred chhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 253 EYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 253 d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
+....+..++.++...|+.++|..+++++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 180 LQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4444556677888999999999999999986
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=7.5e-15 Score=130.91 Aligned_cols=186 Identities=12% Similarity=0.053 Sum_probs=115.5
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhhee----ccccccchhhhhhccccCcchhhHHHhhccchhh----hhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY----LDRF 174 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~----~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~----lg~~ 174 (310)
...+|...|.+++. . +++.+++.+|.++.. .|++++|+..|+++++++ ++.+++++|.++.. .|++
T Consensus 57 ~~~~A~~~~~~a~~--~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~ 130 (273)
T 1ouv_A 57 NLKKAASFYAKACD--L--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDF 130 (273)
T ss_dssp CHHHHHHHHHHHHH--T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHH--C--CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCH
Confidence 34456666666655 3 267777788888877 788888888888887764 66777778888777 7888
Q ss_pred hhhhhhhhhhhccCCCCCccceeeeehhhh----hcChHHHHHhHHHhcC-CChhhHHHHHHhhcC----CCChHHHHHH
Q 021611 175 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEVGR-DPRPVMREAYNMFKG----GGDPEKLVAA 245 (310)
Q Consensus 175 ~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~----l~~~~eA~~~l~~~~~-d~~~~~~~a~~l~~~----~~~~e~al~~ 245 (310)
++|++.|+++++.++ +.+....+..... .+++++|+..+.++.. +....+.....++.. .+++++|+..
T Consensus 131 ~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 208 (273)
T 1ouv_A 131 KKAVEYFTKACDLND--GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALAR 208 (273)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCc--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 888888888877763 3322222222223 5677777777766432 222222222222333 5667777776
Q ss_pred hcCCCCcchhHhhhhhhhhhhh----ccchhhHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 021611 246 FSSGRENEYFYASLYAGLFYES----QKKADAAKLHILAACESPYGQRSDDYMAALAKV 300 (310)
Q Consensus 246 ~~~~~~~d~~~a~~~lG~~~~~----~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~ 300 (310)
+......+...+++.+|.+|.. .|++++|+.+|++|+++. ..+....|..+
T Consensus 209 ~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~ 263 (273)
T 1ouv_A 209 YSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG----AKGACDILKQL 263 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT----CHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC----CHHHHHHHHHH
Confidence 6533322335566777887777 778888888888887732 23444455443
No 59
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.53 E-value=2.7e-15 Score=137.15 Aligned_cols=165 Identities=9% Similarity=0.002 Sum_probs=121.8
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC 198 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~ 198 (310)
.-|+++..++.+|..+...|++++|++.|+++++++|+++.+++.+|.++...|++++|++.|+++++.+|+........
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 44888999999999999999999999999999999999999999999999999999999999999999999543322222
Q ss_pred eehhhhhcChHHHHHhHHH---hcCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcc--hhHhhhhhhhhhhhccch
Q 021611 199 FLCEAQLYGVDEARNRFLE---VGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENE--YFYASLYAGLFYESQKKA 271 (310)
Q Consensus 199 ~l~~a~l~~~~eA~~~l~~---~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d--~~~a~~~lG~~~~~~G~~ 271 (310)
.+...+.++.++|+..+.+ ..|+...........+...|++++|+..+... .+|+ ...++..+|.++..+|+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 2223355666777766655 33443333333333445567777777666421 1222 255677788888888888
Q ss_pred hhHHHHHHHhhc
Q 021611 272 DAAKLHILAACE 283 (310)
Q Consensus 272 d~A~~~~~kAl~ 283 (310)
++|...|++++.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 888888888775
No 60
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.52 E-value=9.3e-15 Score=134.23 Aligned_cols=173 Identities=8% Similarity=0.008 Sum_probs=104.6
Q ss_pred cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
.++...+++++....+|+++.+++.+|.++...|++++|++.|++ |+++.++..+|.++..+|++++|++.|+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445555555544224677777777778888778888888877777 777777777777777778888888888887
Q ss_pred hccCCCCCccceeeeehhh----hhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchh
Q 021611 185 VAQNPNDTEESIWCFLCEA----QLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYF 255 (310)
Q Consensus 185 l~l~P~d~~~~~~~~l~~a----~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~ 255 (310)
++++|++... ....+.. ..|++++|+..+.++ .|+....+......+...|++++|++.+.. ..+|+..
T Consensus 157 ~~~~p~~~~~--~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 157 QDQDEDATLT--QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HHHCTTCHHH--HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HhhCcCcHHH--HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 7777765421 1111111 235677777766553 222222222222234445666666666542 2234455
Q ss_pred Hhhhhhhhhhhhccchhh-HHHHHHHhhcC
Q 021611 256 YASLYAGLFYESQKKADA-AKLHILAACES 284 (310)
Q Consensus 256 ~a~~~lG~~~~~~G~~d~-A~~~~~kAl~~ 284 (310)
.+++++|.++..+|+.++ +..++++++++
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 556667766666776654 45666666663
No 61
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.52 E-value=2.5e-15 Score=122.45 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=95.9
Q ss_pred hhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccC
Q 021611 109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188 (310)
Q Consensus 109 ~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~ 188 (310)
..+.+++. ++|+++.+++.+|.+++..|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++
T Consensus 5 ~~l~~al~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRG--LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHc--CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45667777 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 189 PNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 189 P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
|+++..+...+.+...+|++++|+..+.++
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999986555555566899999999988763
No 62
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=5.3e-15 Score=141.15 Aligned_cols=180 Identities=14% Similarity=0.018 Sum_probs=115.4
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhh------------
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL------------ 171 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l------------ 171 (310)
..++...+.+++. ++|+++.++.++|.++...|++++|++.|++|++++|++..+++++|.++...
T Consensus 229 ~~~a~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 229 EGEGEKLVEEALE--KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp -CHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHH--hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3456677777777 88888888888899988899999999999999999998888888888876543
Q ss_pred -------hhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc-CCChhhHH-HH---H--HhhcCCC
Q 021611 172 -------DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG-RDPRPVMR-EA---Y--NMFKGGG 237 (310)
Q Consensus 172 -------g~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~-~d~~~~~~-~a---~--~l~~~~~ 237 (310)
+.+++|+..|+++++++|++...+...+.+....|++++|+..+.++. .++.+... .+ + ......+
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMK 386 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCC
Confidence 457888888888888888887644433333447888999988887742 22222111 11 1 1122356
Q ss_pred ChHHHHHHhc----CC----------------------CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611 238 DPEKLVAAFS----SG----------------------RENEYFYASLYAGLFYESQKKADAAKLHILAACESP 285 (310)
Q Consensus 238 ~~e~al~~~~----~~----------------------~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~ 285 (310)
+.++|+..+. .. .+|+...++..+|.+|..+|++++|+.+|++|+++.
T Consensus 387 ~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 387 CEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 6666655442 11 134445677789999999999999999999999843
No 63
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.50 E-value=4.4e-15 Score=147.33 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=112.5
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...+|...+.+++. ++|+++.+|+.+|.++..+|++++|++.|+++++++|++..+++++|.++..+|++++|++.|+
T Consensus 4 ~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 4 DGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34668888999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhh
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAG 262 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG 262 (310)
++++++|+++..+...+.+...+|++++|+..+.++.. ..++...++..+|
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----------------------------~~p~~~~~~~~l~ 132 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ-----------------------------LLPEEPYITAQLL 132 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HCTTCHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------------hCCCCHHHHHHHH
Confidence 99999999877544444444477888888777665210 0123344566788
Q ss_pred hhhhhc---cchhhHHHHHHHhhcCC
Q 021611 263 LFYESQ---KKADAAKLHILAACESP 285 (310)
Q Consensus 263 ~~~~~~---G~~d~A~~~~~kAl~~~ 285 (310)
.++..+ |++++|+..|+++++..
T Consensus 133 ~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 133 NWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccHHHHHHHHHHHHhcC
Confidence 888888 89999999999998843
No 64
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.49 E-value=9e-16 Score=128.79 Aligned_cols=125 Identities=12% Similarity=0.050 Sum_probs=104.0
Q ss_pred hhhhhhccCCCcccccccccccccCcccccCCCCccccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccc
Q 021611 62 FHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVV 141 (310)
Q Consensus 62 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~ 141 (310)
-+..++......-....++|....+.... ...+.+.+.+.+|...|.+++. ++|+++.+|+++|.++..+|+++
T Consensus 14 ~l~~~~~~~~~l~~al~l~p~~~~~~~~l----g~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~ 87 (151)
T 3gyz_A 14 AVIDAINSGATLKDINAIPDDMMDDIYSY----AYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQ 87 (151)
T ss_dssp HHHHHHHTSCCTGGGCCSCHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCCHHHHhCCCHHHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHH
Confidence 35566667777777777777633322211 1223344467789999999998 99999999999999999999999
Q ss_pred cchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611 142 GSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 142 eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~ 192 (310)
+|++.|++|++++|+++.+|+++|.++..+|++++|+..|+++++++|+.+
T Consensus 88 ~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 88 QAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999999754
No 65
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.49 E-value=3.3e-15 Score=129.73 Aligned_cols=118 Identities=10% Similarity=0.019 Sum_probs=94.4
Q ss_pred cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhh--hhh
Q 021611 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR--FEE 176 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~--~~e 176 (310)
.+.+...+|...|.+++. ++|+++.+|+.+|.++..+|++++|++.|+++++++|+++.+++++|.+++..|+ .++
T Consensus 65 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 344567788889999998 9999999999999999999999999999999999999999999999999988865 566
Q ss_pred hhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc
Q 021611 177 GAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG 219 (310)
Q Consensus 177 A~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~ 219 (310)
+...|++++..+|.+ .+.+..+++...+|++++|+..+.++.
T Consensus 143 ~~~~~~~~~~~~~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 143 LETDYKKLSSPTKMQ-YARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHC---CCCHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCchh-HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 788898887655432 122333444557889999999998754
No 66
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.49 E-value=1.5e-14 Score=132.85 Aligned_cols=183 Identities=13% Similarity=0.085 Sum_probs=146.7
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhcccc--CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccce
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESI 196 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~ 196 (310)
.+|.+..++..++..+...|++++|++.++++++. +|+++.+++.+|.++...|++++|++.|++ |++++++.
T Consensus 60 ~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~ 134 (291)
T 3mkr_A 60 SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMA 134 (291)
T ss_dssp TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHH
T ss_pred cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHH
Confidence 35668899999999999999999999999998875 699999999999999999999999999998 77777544
Q ss_pred eeeehhhhhcChHHHHHhHHHh---cCCChh-hHHHHH-HhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhcc
Q 021611 197 WCFLCEAQLYGVDEARNRFLEV---GRDPRP-VMREAY-NMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQK 269 (310)
Q Consensus 197 ~~~l~~a~l~~~~eA~~~l~~~---~~d~~~-~~~~a~-~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G 269 (310)
.......++|++++|...+.++ .++... .+..++ .++.+.+++++|+..+... ..|+...+++.+|.++..+|
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 4444445889999999988774 333321 112222 3445568899988887532 24566777888999999999
Q ss_pred chhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCCc
Q 021611 270 KADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 270 ~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
++++|+..|++++++. +.+++.+.+++.++...|++.
T Consensus 215 ~~~eA~~~l~~al~~~--p~~~~~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKD--SGHPETLINLVVLSQHLGKPP 251 (291)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCH
Confidence 9999999999999954 457799999999999999874
No 67
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.48 E-value=2.7e-14 Score=125.03 Aligned_cols=70 Identities=7% Similarity=0.014 Sum_probs=43.7
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcchh---hHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK---AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~---~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
+.+++.+|..++..|++++|+..|+++++..|+++ .+++.+|.+++.+|+|++|++.|+++++++|+++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 45566666666666666666666666666666542 45666666666666666666666666666666543
No 68
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.48 E-value=4.9e-15 Score=138.79 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=123.9
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch---------------hhHHHhhccc
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---------------KAYLWQRGLS 167 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---------------~~a~~~~G~a 167 (310)
.+..+...|..++. .+|+++.+|+.+|.+++.+|++++|+..|++|++++|++ ..+++++|.+
T Consensus 128 ~~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 128 SFEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34557778888887 899999999999999999999999999999999999998 5999999999
Q ss_pred hhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhc
Q 021611 168 LYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFS 247 (310)
Q Consensus 168 ~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~ 247 (310)
+..+|+|++|+..|+++++++|+++.+++.++.+...+|++++|+..+.++..
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--------------------------- 258 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--------------------------- 258 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------------------
Confidence 99999999999999999999999987655555555578888888888775211
Q ss_pred CCCCcchhHhhhhhhhhhhhccchhhH-HHHHHHhhc
Q 021611 248 SGRENEYFYASLYAGLFYESQKKADAA-KLHILAACE 283 (310)
Q Consensus 248 ~~~~~d~~~a~~~lG~~~~~~G~~d~A-~~~~~kAl~ 283 (310)
..|+...++..+|.++..+|++++| ...|++.+.
T Consensus 259 --l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 259 --LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233345667789999999999998 556666654
No 69
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=7.6e-15 Score=140.04 Aligned_cols=200 Identities=11% Similarity=0.014 Sum_probs=141.6
Q ss_pred cccchhhhhhhhcC-------CCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcc--------hhhHHHhhccc
Q 021611 103 FIPSVSGIWDALTG-------GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR--------QKAYLWQRGLS 167 (310)
Q Consensus 103 ~~~~a~~~~~~ai~-------~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~--------~~~a~~~~G~a 167 (310)
...+|...|.+++. ...+|+...+|.++|.+|..+|++++|+..|++++++.|. .+..+.++|.+
T Consensus 66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~ 145 (472)
T 4g1t_A 66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT 145 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence 45667777777654 1246788899999999999999999999999999998653 45678888888
Q ss_pred hhhh--hhhhhhhhhhhhhhccCCCCCccceeeeehhh---hhcChHHHHHhHHH---hcCCChhhHHHHH----HhhcC
Q 021611 168 LYYL--DRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA---QLYGVDEARNRFLE---VGRDPRPVMREAY----NMFKG 235 (310)
Q Consensus 168 ~~~l--g~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a---~l~~~~eA~~~l~~---~~~d~~~~~~~a~----~l~~~ 235 (310)
+... ++|++|+++|+++++++|++++.....+.+.. ..++.++|+..+.+ +.++......... .+...
T Consensus 146 ~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~ 225 (472)
T 4g1t_A 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREE 225 (472)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC--
T ss_pred HHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhh
Confidence 7765 57999999999999999999874333332222 34566777777655 3444333222111 22334
Q ss_pred CCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcc
Q 021611 236 GGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLC 304 (310)
Q Consensus 236 ~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~ 304 (310)
.++.+++.+.+.. ...++...++..+|.++..+|++++|+..|++|++.. +.+...+.++|.++...
T Consensus 226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHH
Confidence 4567777776652 2345566778889999999999999999999999943 35668888888876543
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=3.4e-14 Score=130.22 Aligned_cols=178 Identities=6% Similarity=-0.101 Sum_probs=142.7
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhh-HHHhhccchhhhhhhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA-YLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~-a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
..+|...|++++. .++|+++.+|+.+|.++...|++++|++.|+++++++|+++. +|.++|.++.+.|++++|++.|+
T Consensus 80 ~~~A~~~~~rAl~-~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 80 SDEAANIYERAIS-TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHT-TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3678899999986 149999999999999999999999999999999999999987 99999999999999999999999
Q ss_pred hhhccCCCCCccceeeeehhhh---hcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC-----CC
Q 021611 183 IDVAQNPNDTEESIWCFLCEAQ---LYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG-----RE 251 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~~a~---l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~-----~~ 251 (310)
++++.+|.+.. +|...+... .|++++|+..+.++ .|+....+.....++...|++++|...+... .+
T Consensus 159 ~a~~~~p~~~~--~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDARTRHH--VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTCCTH--HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 99999998765 444444332 68999999988764 3443344433344566678999988777522 23
Q ss_pred cc-hhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 252 NE-YFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 252 ~d-~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
|+ ....+...+.+....|+.++|...++++++.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 3445556778888899999999999999984
No 71
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.46 E-value=2.6e-14 Score=118.55 Aligned_cols=99 Identities=13% Similarity=0.174 Sum_probs=84.5
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC 198 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~ 198 (310)
.+|.++..|+.+|.+++..|++++|++.|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|+++.++...
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999886643333
Q ss_pred eehhhhhcChHHHHHhHHH
Q 021611 199 FLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 199 ~l~~a~l~~~~eA~~~l~~ 217 (310)
+.+...+|++++|+..+.+
T Consensus 86 g~~~~~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEK 104 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHH
Confidence 3333456666666665553
No 72
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.46 E-value=3.1e-14 Score=133.15 Aligned_cols=201 Identities=8% Similarity=-0.077 Sum_probs=129.5
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheecc--ccccchhhhhhccccCcchhhHHHhhccch----hhh---hh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG--DVVGSVAEFDKAIELDPRQKAYLWQRGLSL----YYL---DR 173 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g--~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~----~~l---g~ 173 (310)
+.++|..+++++|. +||+++.+|+.||.++..+| +++++++.++++|+++|++..+|+.||.++ ..+ ++
T Consensus 48 ~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 66788899999998 99999999999999999999 999999999999999999999999999998 666 78
Q ss_pred hhhhhhhhhhhhccCCCCCccceeeeehhhhhcChH--HHHHhHHHh-cCCChh--hHHHHHHhhcCCCC------hHHH
Q 021611 174 FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVD--EARNRFLEV-GRDPRP--VMREAYNMFKGGGD------PEKL 242 (310)
Q Consensus 174 ~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~--eA~~~l~~~-~~d~~~--~~~~a~~l~~~~~~------~e~a 242 (310)
++++++.++++++++|++.+++.++..+..++++++ ++++.+.++ ..+++. .+.-...++...+. ++++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 999999999999999988775444444445677776 777766552 223332 22111112222222 4444
Q ss_pred HHHhc--CCCCcchhHhhhhhhhhhhhccchhhHH-HHHHHhhcCC-CCCCChHHHHHHHHHhhccc
Q 021611 243 VAAFS--SGRENEYFYASLYAGLFYESQKKADAAK-LHILAACESP-YGQRSDDYMAALAKVHSLCR 305 (310)
Q Consensus 243 l~~~~--~~~~~d~~~a~~~lG~~~~~~G~~d~A~-~~~~kAl~~~-~~~~s~~~~~~la~~~~~~~ 305 (310)
+..+. ...+|....++++++.++...|+..++. ....+++++. ....+...+..|+.++...|
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 44332 1123444445555555555555543333 3344444321 11234445555555555444
No 73
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.2e-14 Score=114.97 Aligned_cols=98 Identities=18% Similarity=0.150 Sum_probs=87.3
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL 200 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l 200 (310)
|.++..|+.+|..++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+++|+++++++|+++.++...+.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999998876555555
Q ss_pred hhhhhcChHHHHHhHHHh
Q 021611 201 CEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 201 ~~a~l~~~~eA~~~l~~~ 218 (310)
+...+|++++|+..+.++
T Consensus 81 ~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 81 AQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHH
Confidence 555889999999888763
No 74
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.45 E-value=6e-14 Score=109.77 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=103.2
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC 198 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~ 198 (310)
..|.++.+|+.+|.++...|++++|+..|+++++++|++..+++.+|.++...|++++|++.|+++++++|+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----- 85 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK----- 85 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH-----
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH-----
Confidence 567899999999999999999999999999999999999999999999999999999999999999999986532
Q ss_pred eehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHH
Q 021611 199 FLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHI 278 (310)
Q Consensus 199 ~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~ 278 (310)
+++.+|.++..+|++++|+.+|
T Consensus 86 ----------------------------------------------------------~~~~la~~~~~~~~~~~A~~~~ 107 (133)
T 2lni_A 86 ----------------------------------------------------------GYTRKAAALEAMKDYTKAMDVY 107 (133)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHhhHHHHHHHH
Confidence 1224666777788888888888
Q ss_pred HHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 279 LAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 279 ~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
+++++.. +.+.+.+..++.++..+|+
T Consensus 108 ~~~~~~~--p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 108 QKALDLD--SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHC--GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhC--CCchHHHHHHHHHHHHhcC
Confidence 8888743 2345677777877777664
No 75
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.45 E-value=3.7e-15 Score=126.83 Aligned_cols=91 Identities=14% Similarity=0.050 Sum_probs=84.3
Q ss_pred hhcccchhhhhhhhcCCCCchh------------HHHHHHHhhhhheeccccccchhhhhhcccc-------CcchhhHH
Q 021611 101 RLFIPSVSGIWDALTGGNNNSR------------EAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-------DPRQKAYL 161 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~------------~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l-------~P~~~~a~ 161 (310)
.+.+.+|...|++++. ++|+ ++.+|.++|.++..+|+|++|+++|++||++ +|++..+|
T Consensus 24 ~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~ 101 (159)
T 2hr2_A 24 AGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLW 101 (159)
T ss_dssp HTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHH
T ss_pred CCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHH
Confidence 3457789999999998 8887 3459999999999999999999999999999 99999999
Q ss_pred ----HhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 162 ----WQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 162 ----~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
+++|.++..+|++++|+++|+++++++|+|..
T Consensus 102 ~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 102 ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999999999999999999999875
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=6.8e-15 Score=127.73 Aligned_cols=120 Identities=9% Similarity=0.020 Sum_probs=104.6
Q ss_pred hcccchhhhhhhhcCCCCch-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
+.+.+|...|++++. ++| .++.+++.+|.++..+|++++|+..|+++++++|++..+++.+|.++..+|++++|++.
T Consensus 21 ~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 98 (228)
T 4i17_A 21 KNYAVAFEKYSEYLK--LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIAT 98 (228)
T ss_dssp TCHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHh--ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHH
Confidence 357789999999998 888 88999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCcc-----ceeeeeh--hhhhcChHHHHHhHHHhcC-CCh
Q 021611 181 FRIDVAQNPNDTEE-----SIWCFLC--EAQLYGVDEARNRFLEVGR-DPR 223 (310)
Q Consensus 181 f~~Al~l~P~d~~~-----~~~~~l~--~a~l~~~~eA~~~l~~~~~-d~~ 223 (310)
|+++++++|+++.. ..|..++ ....|++++|+..+.++.. +|.
T Consensus 99 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 99 LTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 99999999998732 2233443 3478999999999988544 444
No 77
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.45 E-value=1.2e-14 Score=127.15 Aligned_cols=99 Identities=9% Similarity=0.039 Sum_probs=73.6
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhcccc--------CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccC--
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN-- 188 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~-- 188 (310)
.+|..+.++..+|.++...|++++|+..|++++++ +|....++.++|.++...|++++|++.|++++++.
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34788888888888888888888888888888877 47778888888888888888888888888888872
Q ss_pred ---CCCCc-cceeeeehh--hhhcChHHHHHhHHH
Q 021611 189 ---PNDTE-ESIWCFLCE--AQLYGVDEARNRFLE 217 (310)
Q Consensus 189 ---P~d~~-~~~~~~l~~--a~l~~~~eA~~~l~~ 217 (310)
|+++. ...+..++. ...|++++|...+.+
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 152 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRR 152 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22221 223333333 367888888887665
No 78
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.44 E-value=1.4e-14 Score=148.16 Aligned_cols=183 Identities=8% Similarity=-0.062 Sum_probs=143.7
Q ss_pred CCchhHHHHHHHhhhhheeccccccchhhhhhcc--------ccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCC
Q 021611 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAI--------ELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189 (310)
Q Consensus 118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl--------~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P 189 (310)
.++|+++.+++.+| ...|++++|++.|++++ +++|++..+++.+|.++..+|++++|++.|+++++++|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 37899999999888 77899999999999999 99999999999999999999999999999999999999
Q ss_pred CCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhh
Q 021611 190 NDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLF 264 (310)
Q Consensus 190 ~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~ 264 (310)
+++.++...+.+...+|++++|+..+.++ .++....+......+...|++++ ++.+.. ..+|+...+++++|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 99886555555556899999999998774 44433333222223333556666 655542 2345667788999999
Q ss_pred hhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 265 YESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 265 ~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
+..+|++++|+.+|++|+++. +.+.+.+.+++.+++..|.
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHcCCHHHHHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 999999999999999999954 3456888899999877654
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.2e-14 Score=129.50 Aligned_cols=166 Identities=12% Similarity=0.010 Sum_probs=126.4
Q ss_pred CCchhHHHHHHHhhhhheeccccccchhhhhhcccc--------CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccC-
Q 021611 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN- 188 (310)
Q Consensus 118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~- 188 (310)
.-+|+.+.++..+|.++...|++++|+..|++++++ +|....++..+|.++...|++++|++.|++++++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999995 78889999999999999999999999999999873
Q ss_pred ----CCCCc-cceeeeehhh--hhcChHHHHHhHHHhc--------CCChh---hHHHHHHhhcCCCChHHHHHHhcC--
Q 021611 189 ----PNDTE-ESIWCFLCEA--QLYGVDEARNRFLEVG--------RDPRP---VMREAYNMFKGGGDPEKLVAAFSS-- 248 (310)
Q Consensus 189 ----P~d~~-~~~~~~l~~a--~l~~~~eA~~~l~~~~--------~d~~~---~~~~a~~l~~~~~~~e~al~~~~~-- 248 (310)
++++. ...+..++.. ..|++++|+..+.++. .++.. .+......+...|++++|+..+..
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22221 2234444433 6889999999877632 11111 111223345567888887766531
Q ss_pred --------CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 249 --------GRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 249 --------~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
...+....++..+|.++..+|++++|+.+|+++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11344556777899999999999999999999997
No 80
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.43 E-value=3e-14 Score=131.84 Aligned_cols=190 Identities=9% Similarity=-0.003 Sum_probs=152.4
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHh-------hhhheeccccccchhhhhhccccCcchhhHHHh-hc---------
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRR-------GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQ-RG--------- 165 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~r-------G~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~-~G--------- 165 (310)
....|...|.+++. ++|+.+++|.+| +.++...+++.+++..+.+++++.|+...++++ .|
T Consensus 21 d~~~A~~~F~~a~~--~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 21 SEARSLDLFTEITN--YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CHHHHHHHHHHHHH--hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 45678899999998 999999999999 999999999999999999999999999988888 44
Q ss_pred -----------cchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhH-----HHH
Q 021611 166 -----------LSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVM-----REA 229 (310)
Q Consensus 166 -----------~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~-----~~a 229 (310)
.++...|+|++|.+.|+..+..+|++. ..+...+...+.+++++|+..+.+....+.+.. ..+
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 668899999999999999999999876 444444444588999999999987665543321 122
Q ss_pred HHhhcCCCChHHHHHHhcCC---CC-cc-hhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHH
Q 021611 230 YNMFKGGGDPEKLVAAFSSG---RE-NE-YFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALA 298 (310)
Q Consensus 230 ~~l~~~~~~~e~al~~~~~~---~~-~d-~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la 298 (310)
...+...|+.++|+..+... .. |. ...+++++|.++..+|+.++|+..|++++.... . ..+...|.
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P--~-~~~~~aL~ 248 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP--E-PKVAAALK 248 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC--C-HHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--c-HHHHHHHh
Confidence 33456678999998888632 21 33 556889999999999999999999999999432 2 45555553
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.43 E-value=4e-14 Score=125.77 Aligned_cols=174 Identities=9% Similarity=0.009 Sum_probs=128.9
Q ss_pred hhcccchhhhhhhhcCCCCchhH---HHHHHHhhhhheeccccccchhhhhhccccCcc---hhhHHHhhccchhh----
Q 021611 101 RLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR---QKAYLWQRGLSLYY---- 170 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~---~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~---~~~a~~~~G~a~~~---- 170 (310)
.+.+.+|...|.+++. .+|++ +.+++.+|.+++.+|++++|+..|+++++++|+ .+.+++.+|.+++.
T Consensus 28 ~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~ 105 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFT--YGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPP 105 (261)
T ss_dssp TTCHHHHHHHHHHHGG--GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCC
T ss_pred hCCHHHHHHHHHHHHH--hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccc
Confidence 3467789999999998 88888 999999999999999999999999999999885 46789999999999
Q ss_pred ----hhhhhhhhhhhhhhhccCCCCCccc-----------------eeeeehhhhhcChHHHHHhHHHhc---CCCh---
Q 021611 171 ----LDRFEEGAEQFRIDVAQNPNDTEES-----------------IWCFLCEAQLYGVDEARNRFLEVG---RDPR--- 223 (310)
Q Consensus 171 ----lg~~~eA~~~f~~Al~l~P~d~~~~-----------------~~~~l~~a~l~~~~eA~~~l~~~~---~d~~--- 223 (310)
+|++++|+..|+++++.+|+++... ...+.+....|++++|+..+.++. |+..
T Consensus 106 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 185 (261)
T 3qky_A 106 YELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWAD 185 (261)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred ccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHH
Confidence 9999999999999999999987643 223334447899999999987742 3321
Q ss_pred hhHH-HHHHhhc---------CCCChHHHHHHhcC-----CCCcchhHhhhhhhhhhhhccchhhHHH
Q 021611 224 PVMR-EAYNMFK---------GGGDPEKLVAAFSS-----GRENEYFYASLYAGLFYESQKKADAAKL 276 (310)
Q Consensus 224 ~~~~-~a~~l~~---------~~~~~e~al~~~~~-----~~~~d~~~a~~~lG~~~~~~G~~d~A~~ 276 (310)
..+. .+..++. ..+++++|+..+.. +..+....+...++.++..+|+++++..
T Consensus 186 ~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 186 DALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 1111 1111221 11567777776642 1222234555567778888887776554
No 82
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.43 E-value=1.2e-13 Score=107.04 Aligned_cols=124 Identities=21% Similarity=0.207 Sum_probs=104.8
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC 198 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~ 198 (310)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|++.|+++++++|+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----- 81 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK----- 81 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH-----
Confidence 688999999999999999999999999999999999999999999999999999999999999999999886532
Q ss_pred eehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHH
Q 021611 199 FLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHI 278 (310)
Q Consensus 199 ~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~ 278 (310)
+++.+|.++..+|++++|+.+|
T Consensus 82 ----------------------------------------------------------~~~~~~~~~~~~~~~~~A~~~~ 103 (131)
T 2vyi_A 82 ----------------------------------------------------------AYGRMGLALSSLNKHVEAVAYY 103 (131)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHHHHhCCHHHHHHHH
Confidence 1224666777778888888888
Q ss_pred HHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 279 LAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 279 ~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
+++++.. +.+...+..++.++...|++
T Consensus 104 ~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 104 KKALELD--PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHS--TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcC--ccchHHHHHHHHHHHHHhcC
Confidence 8888743 34557777788888777765
No 83
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.42 E-value=1.4e-14 Score=135.64 Aligned_cols=172 Identities=9% Similarity=-0.042 Sum_probs=124.5
Q ss_pred hcCCCCchhHHHHHHHhhhhhe------------eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 114 LTGGNNNSREAVVAIRRGMLLF------------RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 114 ai~~~~~P~~~~a~~~rG~~~~------------~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
++. ++|+. +|..+|.... .++++++|++.|+++++++|++..+++++|.+++..|+|++|+..|
T Consensus 95 ~l~--i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y 170 (336)
T 1p5q_A 95 IVY--LKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQY 170 (336)
T ss_dssp EEE--ECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EEE--ECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444 78876 7888887653 7899999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhh
Q 021611 182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASL 259 (310)
Q Consensus 182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~ 259 (310)
+++++++|++.... .+++.. .. +.....+......+...+++++|+..+.. ...|+...+++
T Consensus 171 ~~Al~~~p~~~~~~------------~~~~~~-~~---~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 234 (336)
T 1p5q_A 171 KKIVSWLEYESSFS------------NEEAQK-AQ---ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234 (336)
T ss_dssp HHHHHHTTTCCCCC------------SHHHHH-HH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhhccccCC------------hHHHHH-HH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999885310 000000 00 00000011111122334555665555542 12355667888
Q ss_pred hhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 260 YAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 260 ~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
.+|.++..+|++++|+.+|++|+++. +.+...+.+++.++..+|++
T Consensus 235 ~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 235 RRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999954 34568888999998887764
No 84
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.41 E-value=3.5e-13 Score=114.96 Aligned_cols=149 Identities=13% Similarity=0.045 Sum_probs=101.8
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL 200 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l 200 (310)
......++.+|.++...|++++|+..|++++ +| ++.+++++|.++..+|++++|++.|+++++++|+++.++...+.
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3455677788888888888888888888886 33 45678888888888888888888888888888877664433333
Q ss_pred hhhhhcChHHHHHhHHHhcC-CChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHH
Q 021611 201 CEAQLYGVDEARNRFLEVGR-DPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHIL 279 (310)
Q Consensus 201 ~~a~l~~~~eA~~~l~~~~~-d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~ 279 (310)
+...+|++++|+..+.++.. .+.... .. +. .......+....+++.+|.++..+|++++|+.+|+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~-~~--~~-----------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQL-ID--YK-----------ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSE-EE--CG-----------GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccH-HH--HH-----------HhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44467778888777765321 111000 00 00 00012334556778899999999999999999999
Q ss_pred HhhcCCC
Q 021611 280 AACESPY 286 (310)
Q Consensus 280 kAl~~~~ 286 (310)
+++++..
T Consensus 146 ~al~~~p 152 (213)
T 1hh8_A 146 LATSMKS 152 (213)
T ss_dssp HHHTTCC
T ss_pred HHHHcCc
Confidence 9999654
No 85
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.41 E-value=1.7e-14 Score=122.51 Aligned_cols=95 Identities=20% Similarity=0.373 Sum_probs=87.6
Q ss_pred cccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccc----------cchhhhhhccccCcchhhHHHhhcc
Q 021611 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVV----------GSVAEFDKAIELDPRQKAYLWQRGL 166 (310)
Q Consensus 97 ~~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~----------eAl~~f~kAl~l~P~~~~a~~~~G~ 166 (310)
...|-+.+.+|...+.+++. ++|+++++|+++|.++..+|+++ +|+..|++||+++|++..+|+++|.
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 44555688889999999998 99999999999999999999875 9999999999999999999999999
Q ss_pred chhhhh-----------hhhhhhhhhhhhhccCCCCCc
Q 021611 167 SLYYLD-----------RFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 167 a~~~lg-----------~~~eA~~~f~~Al~l~P~d~~ 193 (310)
+|..+| ++++|+++|++|++++|++..
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 999985 899999999999999998753
No 86
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.41 E-value=3.6e-14 Score=129.37 Aligned_cols=177 Identities=10% Similarity=0.045 Sum_probs=117.9
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.+.+.+|...|.+++. .+|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|+..
T Consensus 17 ~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 94 (281)
T 2c2l_A 17 GRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIAN 94 (281)
T ss_dssp TTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3356778889999998 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCccceeeeehhhhhcChHHHHH--hHHH-hcCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchh
Q 021611 181 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARN--RFLE-VGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYF 255 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~--~l~~-~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~ 255 (310)
|+++++++|+++.... ......+ +..++.. .... ..+..... ...+..+. .++.+++++.+... ..|+..
T Consensus 95 ~~~al~l~p~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i-~~~l~~l~-~~~~~~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 95 LQRAYSLAKEQRLNFG--DDIPSAL-RIAKKKRWNSIEERRIHQESEL-HSYLTRLI-AAERERELEECQRNHEGHEDDG 169 (281)
T ss_dssp HHHHHHHHHHTTCCCC--SHHHHHH-HHHHHHHHHHHHHTCCCCCCHH-HHHHHHHH-HHHHHHHHTTTSGGGTTTSCHH
T ss_pred HHHHHHhCccchhhHH--HHHHHHH-HHHHHHHHHHHHHHHHhhhHHH-HHHHHHHH-HHHHHHHHHHHHhhhccccchh
Confidence 9999999998754211 1111111 1111111 1111 11111111 11111121 35667777766532 234433
Q ss_pred Hhhhhhhhhhhhc-cchhhHHHHHHHhhcC
Q 021611 256 YASLYAGLFYESQ-KKADAAKLHILAACES 284 (310)
Q Consensus 256 ~a~~~lG~~~~~~-G~~d~A~~~~~kAl~~ 284 (310)
.....++.++... +++++|...|+++.+.
T Consensus 170 ~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 170 HIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3333444444444 7889999999998873
No 87
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=8.5e-14 Score=140.12 Aligned_cols=171 Identities=11% Similarity=-0.026 Sum_probs=133.8
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccc----------cccchhhhhhccccCcchhhHHHhhccchhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD 172 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~----------~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg 172 (310)
+.++|...+++++. +||+++.+|+.||.++..+|+ ++++++.++++++.+|++..+|+.||.++..+|
T Consensus 44 ~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 66788999999998 999999999999999999999 999999999999999999999999999999999
Q ss_pred --hhhhhhhhhhhhhccCCCCCccceeeeehhhhhc-ChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCC
Q 021611 173 --RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY-GVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG 249 (310)
Q Consensus 173 --~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~-~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~ 249 (310)
++++|++.++++++++|++.+++.+++.+...++ .++++++.+.+.. .
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I-----------------------------~ 172 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI-----------------------------T 172 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT-----------------------------T
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHH-----------------------------H
Confidence 6799999999999999999875444433344556 5556555544421 1
Q ss_pred CCcchhHhhhhhhhhhhhc--------------cchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 250 RENEYFYASLYAGLFYESQ--------------KKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 250 ~~~d~~~a~~~lG~~~~~~--------------G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
.++....+|.++|.++..+ +.+++|++++.+|+++.. .+...|..++.++...+.
T Consensus 173 ~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P--~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP--NDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS--SCSHHHHHHHHHHSCCCC
T ss_pred HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC--CCccHHHHHHHHHhcCCC
Confidence 2333444555555555442 678999999999998543 455777788777776654
No 88
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=6.7e-15 Score=137.67 Aligned_cols=202 Identities=12% Similarity=0.011 Sum_probs=133.5
Q ss_pred hcccchhhhhhhhcCCCCchhHH----HHHHHhhhhheeccccccchhhhhhcccc------CcchhhHHHhhccchhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREA----VVAIRRGMLLFRQGDVVGSVAEFDKAIEL------DPRQKAYLWQRGLSLYYL 171 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~----~a~~~rG~~~~~~g~~~eAl~~f~kAl~l------~P~~~~a~~~~G~a~~~l 171 (310)
+.+.+|...|.+++. ++|+++ .+|+.+|.++..+|++++|+..|++++++ +|....+++.+|.++..+
T Consensus 62 g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 62 GDCRAGVAFFQAAIQ--AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp TCHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHH--hcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 356678888888887 677665 58888899999999999999999998888 677788888899999999
Q ss_pred hhhhhhhhhhhhhhcc------CCCCCccceeeeeh--hhhhcC-----------------hHHHHHhHHHhcC-----C
Q 021611 172 DRFEEGAEQFRIDVAQ------NPNDTEESIWCFLC--EAQLYG-----------------VDEARNRFLEVGR-----D 221 (310)
Q Consensus 172 g~~~eA~~~f~~Al~l------~P~d~~~~~~~~l~--~a~l~~-----------------~~eA~~~l~~~~~-----d 221 (310)
|++++|++.|++++++ .|.... .+..++ ....|+ +++|+..+.++.. .
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 217 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGR--ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG 217 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHH--HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999988887 332222 333333 335677 7777776655311 1
Q ss_pred Chh----hHHHHHHhhcCCCChHHHHHHhcCC--------CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCC
Q 021611 222 PRP----VMREAYNMFKGGGDPEKLVAAFSSG--------RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQR 289 (310)
Q Consensus 222 ~~~----~~~~a~~l~~~~~~~e~al~~~~~~--------~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~ 289 (310)
..+ .+......+...|++++|+..+... .......++..+|.++..+|++++|+.+|+++++......
T Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 111 1111222344467777776655421 1111233566688888888888888888888887321111
Q ss_pred ----ChHHHHHHHHHhhcccCC
Q 021611 290 ----SDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 290 ----s~~~~~~la~~~~~~~~~ 307 (310)
....+..+|.++..+|+|
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHHHHcCCH
Confidence 134556778888877775
No 89
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.39 E-value=3.4e-14 Score=113.62 Aligned_cols=88 Identities=11% Similarity=0.050 Sum_probs=56.8
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...+|...+.+++. ++|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+
T Consensus 32 ~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (121)
T 1hxi_A 32 NLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109 (121)
T ss_dssp CHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45556666666666 6677777777777777777777777777777777777766677777777777777777777777
Q ss_pred hhhccCCCCC
Q 021611 183 IDVAQNPNDT 192 (310)
Q Consensus 183 ~Al~l~P~d~ 192 (310)
++++++|+++
T Consensus 110 ~al~~~P~~~ 119 (121)
T 1hxi_A 110 AWLLSQPQYE 119 (121)
T ss_dssp HHHC------
T ss_pred HHHHhCcCCC
Confidence 7777766553
No 90
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=2.7e-13 Score=133.12 Aligned_cols=199 Identities=12% Similarity=0.062 Sum_probs=152.6
Q ss_pred chhhhhhhhcCCCCchhHHHHHHHhhhhhee-------ccccc-------cchhhhhhccc-cCcchhhHHHhhccchhh
Q 021611 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFR-------QGDVV-------GSVAEFDKAIE-LDPRQKAYLWQRGLSLYY 170 (310)
Q Consensus 106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~-------~g~~~-------eAl~~f~kAl~-l~P~~~~a~~~~G~a~~~ 170 (310)
.+...|.+++. .+|+++.+|+.+|..+.. .|+++ +|++.|++|++ ++|++...|..+|.++..
T Consensus 256 ~a~~~y~~al~--~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34568889998 899999999999999986 79998 99999999998 899999999999999999
Q ss_pred hhhhhhhhhhhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcCCCh---h-hHHHHHHhhcCCCChHHHHH
Q 021611 171 LDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGRDPR---P-VMREAYNMFKGGGDPEKLVA 244 (310)
Q Consensus 171 lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~---~-~~~~a~~l~~~~~~~e~al~ 244 (310)
.|++++|.+.|+++++++|+++. .+|..++.. +.|++++|+..+.++...+. . ....+...+...|+.+++..
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhCccccCch-HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH
Confidence 99999999999999999998752 256555543 67889999999988654322 1 12222222334678888887
Q ss_pred HhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCC--CCChHHHHHHHHHhhcccCC
Q 021611 245 AFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYG--QRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 245 ~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~--~~s~~~~~~la~~~~~~~~~ 307 (310)
.+... ..|+....+...+.++..+|+.++|+..|++|+..... ......+......+..+|+.
T Consensus 413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 77632 23445566677888899999999999999999984211 12233665667777777764
No 91
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.38 E-value=3.8e-14 Score=120.60 Aligned_cols=96 Identities=18% Similarity=0.087 Sum_probs=85.4
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcc-------hh-----hHHHhhccchhhhhhhhhhhhhhhhhhcc---
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR-------QK-----AYLWQRGLSLYYLDRFEEGAEQFRIDVAQ--- 187 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~-------~~-----~a~~~~G~a~~~lg~~~eA~~~f~~Al~l--- 187 (310)
.+..+.++|..++.+|+|++|++.|++||+++|+ +. .+|.++|.++..+|+|++|+.+|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4678999999999999999999999999999999 33 39999999999999999999999999999
Q ss_pred ----CCCCCccc----eeeeehhhhhcChHHHHHhHHHh
Q 021611 188 ----NPNDTEES----IWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 188 ----~P~d~~~~----~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
+|+++.++ +.++.++..+|+++||+..+.++
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 99988765 54555555899999999998874
No 92
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.38 E-value=1.8e-14 Score=117.30 Aligned_cols=92 Identities=11% Similarity=0.055 Sum_probs=87.0
Q ss_pred chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
+.+.+.+|...|.+++. ++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|++
T Consensus 30 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 30 QAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 33467789999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCCc
Q 021611 180 QFRIDVAQNPNDTE 193 (310)
Q Consensus 180 ~f~~Al~l~P~d~~ 193 (310)
.|+++++++|+++.
T Consensus 108 ~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 108 GFYSARALAAAQPA 121 (142)
T ss_dssp HHHHHHHHHHTCGG
T ss_pred HHHHHHHhCCCCcc
Confidence 99999999998876
No 93
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.38 E-value=8.1e-14 Score=136.00 Aligned_cols=144 Identities=12% Similarity=0.154 Sum_probs=117.6
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch---------------hhHHHhhccc
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---------------KAYLWQRGLS 167 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---------------~~a~~~~G~a 167 (310)
.+..+...|..++. .+|+.+.+|..+|.+++.+|+|++|+..|++|++++|++ ..+|+++|.+
T Consensus 249 ~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34467777777777 899999999999999999999999999999999999998 6899999999
Q ss_pred hhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhc
Q 021611 168 LYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFS 247 (310)
Q Consensus 168 ~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~ 247 (310)
+..+|+|++|+.+|+++++++|+++.+++.++.+...+|++++|+..+.++..
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--------------------------- 379 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--------------------------- 379 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---------------------------
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------------------------
Confidence 99999999999999999999999987666555556678889888888776321
Q ss_pred CCCCcchhHhhhhhhhhhhhccchhhHHHH
Q 021611 248 SGRENEYFYASLYAGLFYESQKKADAAKLH 277 (310)
Q Consensus 248 ~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~ 277 (310)
.+|+...++..+|.++..+|++++|...
T Consensus 380 --l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 380 --VNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp --TC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223334566788888888888887754
No 94
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.37 E-value=4e-14 Score=129.06 Aligned_cols=161 Identities=14% Similarity=0.123 Sum_probs=115.5
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL 200 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l 200 (310)
|+++.+++.+|.+++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+++|+++++++|+++.++...+.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999875554544
Q ss_pred hhhhhcChHHHHHhHHHhc---CCChhhH-HHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHH
Q 021611 201 CEAQLYGVDEARNRFLEVG---RDPRPVM-REAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKL 276 (310)
Q Consensus 201 ~~a~l~~~~eA~~~l~~~~---~d~~~~~-~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~ 276 (310)
+...+|++++|+..+.++. ++....+ ..+...+. .....+....... ..++......++|.++ .|++++|++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~i~~~l~~l~--~~~~~~A~~ 156 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-IAKKKRWNSIEER-RIHQESELHSYLTRLI--AAERERELE 156 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-HHHHHHHHHHHHT-CCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-HHHHHHHHHHHHH-HHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence 5558999999999887632 2111000 01110110 0000111111111 1122233344566655 799999999
Q ss_pred HHHHhhcCC
Q 021611 277 HILAACESP 285 (310)
Q Consensus 277 ~~~kAl~~~ 285 (310)
.|++|++..
T Consensus 157 ~~~~al~~~ 165 (281)
T 2c2l_A 157 ECQRNHEGH 165 (281)
T ss_dssp TTSGGGTTT
T ss_pred HHHhhhccc
Confidence 999999954
No 95
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=2.2e-14 Score=132.60 Aligned_cols=86 Identities=12% Similarity=0.091 Sum_probs=52.5
Q ss_pred cccchhhhhhhhcCCCCchhH----HHHHHHhhhhheeccccccchhhhhhcccc------CcchhhHHHhhccchhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSRE----AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL------DPRQKAYLWQRGLSLYYLD 172 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~----~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l------~P~~~~a~~~~G~a~~~lg 172 (310)
...+|...+.+++. ++|++ +.++..+|.++...|++++|+..|++++++ .|....++..+|.++..+|
T Consensus 24 ~~~~A~~~~~~al~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 24 DCRAGVSFFEAAVQ--VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp CHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 34456666666655 44544 345666666666666666666666666665 3444556666666666666
Q ss_pred hhhhhhhhhhhhhccCCC
Q 021611 173 RFEEGAEQFRIDVAQNPN 190 (310)
Q Consensus 173 ~~~eA~~~f~~Al~l~P~ 190 (310)
++++|+..|++++++.|+
T Consensus 102 ~~~~A~~~~~~al~~~~~ 119 (406)
T 3sf4_A 102 NFDEAIVCCQRHLDISRE 119 (406)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 666666666666665543
No 96
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.37 E-value=2.7e-14 Score=118.50 Aligned_cols=94 Identities=11% Similarity=0.177 Sum_probs=88.3
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.+.+.+|...|.+++. ++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|++.
T Consensus 24 ~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 101 (164)
T 3sz7_A 24 RKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEA 101 (164)
T ss_dssp TTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 3467789999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCccce
Q 021611 181 FRIDVAQNPNDTEESI 196 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~ 196 (310)
|+++++++|+++..++
T Consensus 102 ~~~al~~~p~~~~~~~ 117 (164)
T 3sz7_A 102 YEKGIEAEGNGGSDAM 117 (164)
T ss_dssp HHHHHHHHSSSCCHHH
T ss_pred HHHHHHhCCCchHHHH
Confidence 9999999999987433
No 97
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.37 E-value=2.1e-13 Score=112.71 Aligned_cols=118 Identities=11% Similarity=0.007 Sum_probs=94.3
Q ss_pred ccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 139 DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 139 ~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
++-.+-..|+++++++|++..+++++|.+++..|+|++|+..|+++++++|+++..+...+.+...+|++++|+..+.++
T Consensus 2 ~~~~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp ----CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccchhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44455678999999999999999999999999999999999999999999999874333333444778888888877752
Q ss_pred cCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611 219 GRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESP 285 (310)
Q Consensus 219 ~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~ 285 (310)
.. ..|+...+++++|.++..+|++++|+.+|++++++.
T Consensus 82 l~-----------------------------l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 82 AV-----------------------------MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HH-----------------------------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Hh-----------------------------cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 10 123445677889999999999999999999999954
No 98
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=3.1e-14 Score=126.83 Aligned_cols=182 Identities=11% Similarity=0.039 Sum_probs=129.0
Q ss_pred cccchhhhhhhhcCC------CCchhHHHHHHHhhhhheeccccccchhhhhhcccc--------CcchhhHHHhhccch
Q 021611 103 FIPSVSGIWDALTGG------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSL 168 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~------~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~ 168 (310)
...+|...+.+++.. ..+|..+.++..+|.++...|++++|+..|++++++ +|....++..+|.++
T Consensus 42 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (311)
T 3nf1_A 42 RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY 121 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 456677777777641 136888899999999999999999999999999988 577788999999999
Q ss_pred hhhhhhhhhhhhhhhhhccC-----CCCCc-cceeeeehh--hhhcChHHHHHhHHHhcC--------CChh---hHHHH
Q 021611 169 YYLDRFEEGAEQFRIDVAQN-----PNDTE-ESIWCFLCE--AQLYGVDEARNRFLEVGR--------DPRP---VMREA 229 (310)
Q Consensus 169 ~~lg~~~eA~~~f~~Al~l~-----P~d~~-~~~~~~l~~--a~l~~~~eA~~~l~~~~~--------d~~~---~~~~a 229 (310)
...|++++|++.|++++++. ++++. ...+..++. ...|++++|+..+.++.. +... .+...
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (311)
T 3nf1_A 122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNL 201 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999874 33222 223333433 367889999888766321 1111 11122
Q ss_pred HHhhcCCCChHHHHHHhcCC---------------------------------------------------CCcchhHhh
Q 021611 230 YNMFKGGGDPEKLVAAFSSG---------------------------------------------------RENEYFYAS 258 (310)
Q Consensus 230 ~~l~~~~~~~e~al~~~~~~---------------------------------------------------~~~d~~~a~ 258 (310)
...+...|++++|+..+... ..+....++
T Consensus 202 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 281 (311)
T 3nf1_A 202 ASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTL 281 (311)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHH
Confidence 22344456777765554311 124455667
Q ss_pred hhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 259 LYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 259 ~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
..+|.++..+|++++|+.+|++++++
T Consensus 282 ~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 282 KNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77899999999999999999999873
No 99
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=3.2e-14 Score=126.86 Aligned_cols=203 Identities=12% Similarity=0.014 Sum_probs=115.8
Q ss_pred cccchhhhhhhhcCCCCchhH----HHHHHHhhhhheeccccccchhhhhhcccc------CcchhhHHHhhccchhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSRE----AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL------DPRQKAYLWQRGLSLYYLD 172 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~----~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l------~P~~~~a~~~~G~a~~~lg 172 (310)
...+|...|.+++. .+|++ ..++..+|.++...|++++|++.|++++++ .|....++..+|.++...|
T Consensus 20 ~~~~A~~~~~~al~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQ--VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp CHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 45567777777766 55655 467777777777778888888877777777 4555677777777777778
Q ss_pred hhhhhhhhhhhhhccCCCCCc----cceeeeehh--hhhcC--------------------hHHHHHhHHHhcC-----C
Q 021611 173 RFEEGAEQFRIDVAQNPNDTE----ESIWCFLCE--AQLYG--------------------VDEARNRFLEVGR-----D 221 (310)
Q Consensus 173 ~~~eA~~~f~~Al~l~P~d~~----~~~~~~l~~--a~l~~--------------------~~eA~~~l~~~~~-----d 221 (310)
++++|++.|++++++.|.... +..+..++. ...|+ +++|...+.++.. .
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~ 177 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888777777776554322 112222222 24566 6666665544211 1
Q ss_pred Chhh----HHHHHHhhcCCCChHHHHHHhcCC--------CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCC
Q 021611 222 PRPV----MREAYNMFKGGGDPEKLVAAFSSG--------RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQR 289 (310)
Q Consensus 222 ~~~~----~~~a~~l~~~~~~~e~al~~~~~~--------~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~ 289 (310)
..+. +......+...|++++++..+... .......++..+|.++..+|++++|+.++++++++.....
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 1111 111112233345666655544311 1111233555677777777777777777777765311111
Q ss_pred C----hHHHHHHHHHhhcccCC
Q 021611 290 S----DDYMAALAKVHSLCRNW 307 (310)
Q Consensus 290 s----~~~~~~la~~~~~~~~~ 307 (310)
+ ...+..+|.++..+|+|
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHHHHHHHhcCH
Confidence 1 33445666777666665
No 100
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=3e-14 Score=133.24 Aligned_cols=206 Identities=12% Similarity=-0.042 Sum_probs=149.7
Q ss_pred cccchhhhhhhhcCC----CCchhHHHHHHHhhhhheeccccccchhhhhhcccc------CcchhhHHHhhccchhhhh
Q 021611 103 FIPSVSGIWDALTGG----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL------DPRQKAYLWQRGLSLYYLD 172 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l------~P~~~~a~~~~G~a~~~lg 172 (310)
...+|...+.+++.. ..+|..+.++..+|.++..+|++++|+..|++++++ .|....++.++|.++...|
T Consensus 101 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 456677777777651 127889999999999999999999999999999999 6777889999999999999
Q ss_pred h-----------------hhhhhhhhhhhhccCCCCC----ccceeeeehh--hhhcChHHHHHhHHHhcC------CCh
Q 021611 173 R-----------------FEEGAEQFRIDVAQNPNDT----EESIWCFLCE--AQLYGVDEARNRFLEVGR------DPR 223 (310)
Q Consensus 173 ~-----------------~~eA~~~f~~Al~l~P~d~----~~~~~~~l~~--a~l~~~~eA~~~l~~~~~------d~~ 223 (310)
+ +++|++.|++++++.+... ....+..++. ...|++++|+..+.++.. ++.
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 9 9999999999988743211 1223333433 368999999998876422 111
Q ss_pred h---hHHHHHHhhcCCCChHHHHHHhcCC--------CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCC----
Q 021611 224 P---VMREAYNMFKGGGDPEKLVAAFSSG--------RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQ---- 288 (310)
Q Consensus 224 ~---~~~~a~~l~~~~~~~e~al~~~~~~--------~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~---- 288 (310)
. .+......+...|++++++..+... .......++..+|.++..+|++++|+.+|++++++....
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 0 1122233455678888887766421 111235567789999999999999999999999842111
Q ss_pred CChHHHHHHHHHhhcccCCc
Q 021611 289 RSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 289 ~s~~~~~~la~~~~~~~~~~ 308 (310)
.....+..+|.++..+|++.
T Consensus 341 ~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHH
Confidence 11346778899999999863
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.36 E-value=4.5e-13 Score=125.22 Aligned_cols=193 Identities=9% Similarity=-0.005 Sum_probs=144.3
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhh----eec---cccccchhhhhhccccCcchhhHHHhhccchhhhhhhh-
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLL----FRQ---GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFE- 175 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~----~~~---g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~- 175 (310)
..++...++.++. ++|+++.+|++|+.++ ... ++++++++.++++++++|++..+|..||.++..+|+++
T Consensus 85 ~~eeL~~~~~~L~--~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 85 LYDELDWCEEIAL--DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp HHHHHHHHHHHHH--HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHH--HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCh
Confidence 5568888999998 9999999999999999 666 89999999999999999999999999999999999999
Q ss_pred -hhhhhhhhhhccCCCCCccceeeeehhhhhcC------hHHHHHhHHH---hcCCChhhHHHHHHhhcCCCC-hHHHHH
Q 021611 176 -EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG------VDEARNRFLE---VGRDPRPVMREAYNMFKGGGD-PEKLVA 244 (310)
Q Consensus 176 -eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~------~~eA~~~l~~---~~~d~~~~~~~a~~l~~~~~~-~e~al~ 244 (310)
++++.++++++++|.+..++.++......+++ ++++++.+.+ ..++....+.-...++...++ .+++..
T Consensus 163 ~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~ 242 (306)
T 3dra_A 163 AKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEE 242 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHH
Confidence 99999999999999998754434333445565 7888887765 344444444322223333333 444444
Q ss_pred HhcCC-----CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHH
Q 021611 245 AFSSG-----RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAALAK 299 (310)
Q Consensus 245 ~~~~~-----~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~ 299 (310)
.+... .++....+..+++.++..+|+.++|+.+|+++.+ .+.+-..+||.-.+.
T Consensus 243 ~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~-~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 243 FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS-KYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHHHHHHH
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-ccChHHHHHHHHHHh
Confidence 44321 1244567888899999999999999999999986 222233477654443
No 102
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.36 E-value=1e-13 Score=109.06 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=83.3
Q ss_pred cccchhhhhhhhcCCCC---chhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNN---NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~---~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
...+|...|.+++. + +|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|++
T Consensus 5 ~~~~A~~~~~~al~--~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 5 LEAQAVPYYEKAIA--SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp --CCCHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHHH--cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45678899999998 8 799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCCc
Q 021611 180 QFRIDVAQNPNDTE 193 (310)
Q Consensus 180 ~f~~Al~l~P~d~~ 193 (310)
.|+++++++|+++.
T Consensus 83 ~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 83 LLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCcHH
Confidence 99999999998875
No 103
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.36 E-value=1.5e-13 Score=125.29 Aligned_cols=156 Identities=12% Similarity=0.045 Sum_probs=108.7
Q ss_pred hcccchhhhhhhhcCCCCc-----h-hHHHHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchh
Q 021611 102 LFIPSVSGIWDALTGGNNN-----S-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLY 169 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~-----P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~ 169 (310)
+.+.+|...|.+++. +. | ..+.+|.++|.++..+|++++|+..|++|+++.|.. ..++.++|.++.
T Consensus 51 g~~~~A~~~~~~al~--~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 51 KELNLAGDSFLKAAD--YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128 (292)
T ss_dssp TCTHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 356677777777765 32 2 346889999999999999999999999999998754 457888999999
Q ss_pred hh-hhhhhhhhhhhhhhccCCCCCc----cceeeeehh--hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHH
Q 021611 170 YL-DRFEEGAEQFRIDVAQNPNDTE----ESIWCFLCE--AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKL 242 (310)
Q Consensus 170 ~l-g~~~eA~~~f~~Al~l~P~d~~----~~~~~~l~~--a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~a 242 (310)
.. |++++|++.|++|+++.|++.. ...+..++. .++|++++|+..+.++..
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---------------------- 186 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK---------------------- 186 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----------------------
Confidence 85 9999999999999998875422 112222222 245666666665554211
Q ss_pred HHHhcCCCC-c----chhHhhhhhhhhhhhccchhhHHHHHHHhhcCCC
Q 021611 243 VAAFSSGRE-N----EYFYASLYAGLFYESQKKADAAKLHILAACESPY 286 (310)
Q Consensus 243 l~~~~~~~~-~----d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~ 286 (310)
..+. + ....+++.+|.++..+|++++|+.+|++++++..
T Consensus 187 -----~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 187 -----SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp -----TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred -----HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1111 1 1122456789999999999999999999998643
No 104
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.36 E-value=2.9e-13 Score=110.10 Aligned_cols=133 Identities=14% Similarity=0.031 Sum_probs=105.8
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC 201 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~ 201 (310)
+.+..|+.+|.+++..|++++|+..|+++++++|++..+++++|.++..+|++++|++.|+++++++|+++..+...+.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999887654434344
Q ss_pred hhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhh--hhhhhhhhhccchhhHHHHHH
Q 021611 202 EAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYAS--LYAGLFYESQKKADAAKLHIL 279 (310)
Q Consensus 202 ~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~--~~lG~~~~~~G~~d~A~~~~~ 279 (310)
...+|++++|+..+.++.. . .++...++ +.++..+..+|++++|+..+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~---------------------------~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVK---------------------------V--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHH---------------------------H--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH---------------------------h--CCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4477888888877765211 0 01111222 334555778899999999999
Q ss_pred Hhhc
Q 021611 280 AACE 283 (310)
Q Consensus 280 kAl~ 283 (310)
++..
T Consensus 142 ~~~~ 145 (166)
T 1a17_A 142 HKRS 145 (166)
T ss_dssp HHHH
T ss_pred chHH
Confidence 8765
No 105
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.35 E-value=3.1e-14 Score=112.63 Aligned_cols=86 Identities=14% Similarity=0.165 Sum_probs=82.6
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.+.+.+|...|.+++. ++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|++.
T Consensus 17 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 94 (126)
T 3upv_A 17 KSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 94 (126)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3456789999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccC
Q 021611 181 FRIDVAQN 188 (310)
Q Consensus 181 f~~Al~l~ 188 (310)
|+++++++
T Consensus 95 ~~~al~~~ 102 (126)
T 3upv_A 95 LDAARTKD 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999999
No 106
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=4.7e-13 Score=109.67 Aligned_cols=144 Identities=14% Similarity=0.135 Sum_probs=116.8
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
+...++...+.+++. .+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|++.|
T Consensus 22 ~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 99 (186)
T 3as5_A 22 GRYSQAVMLLEQVYD--ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLL 99 (186)
T ss_dssp TCHHHHHHHHTTTCC--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH--hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 356678888888888 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhc
Q 021611 182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFS 247 (310)
Q Consensus 182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~ 247 (310)
+++++.+|+++..+...+.+....|++++|...+.++ .++....+......+...|++++|...+.
T Consensus 100 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 100 IKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988764433333444789999999988764 33332333233334455778888877664
No 107
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.34 E-value=8.4e-14 Score=105.48 Aligned_cols=100 Identities=21% Similarity=0.260 Sum_probs=87.3
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCC--CCccce
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPN--DTEESI 196 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~--d~~~~~ 196 (310)
++|+++.+|+.+|.++...|++++|+..|+++++++|++..+++++|.++..+|++++|++.|+++++++|+ +...+.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 478889999999999999999999999999999999999999999999999999999999999999999998 765433
Q ss_pred eeeehhhhh-cChHHHHHhHHHh
Q 021611 197 WCFLCEAQL-YGVDEARNRFLEV 218 (310)
Q Consensus 197 ~~~l~~a~l-~~~~eA~~~l~~~ 218 (310)
..+.+...+ |++++|+..+.++
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 333334478 8899998888764
No 108
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.34 E-value=2.1e-12 Score=119.48 Aligned_cols=180 Identities=13% Similarity=0.024 Sum_probs=141.2
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh-------ccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR-------GLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW 197 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~-------G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~ 197 (310)
.-++.+|+-+ .-+++++|++.|.++++++|++..+|.++ |.++..+++..+++..+++++++.|+...+.++
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 4566777776 58999999999999999999999999999 999999999999999999999999998775554
Q ss_pred -ee--------------------ehhhhhcChHHHHHhHHHhcC-CChhh--HHHHHHhhcCCCChHHHHHHhcCCCC-c
Q 021611 198 -CF--------------------LCEAQLYGVDEARNRFLEVGR-DPRPV--MREAYNMFKGGGDPEKLVAAFSSGRE-N 252 (310)
Q Consensus 198 -~~--------------------l~~a~l~~~~eA~~~l~~~~~-d~~~~--~~~a~~l~~~~~~~e~al~~~~~~~~-~ 252 (310)
.+ ..+...|++++|.+.+..+.. .|... +..+. ++...++.++++..+..... +
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~-l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAV-VYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHH-HHHHTTCHHHHHHHHTTGGGCS
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHH-HHHHcCCHHHHHHHHHHhhccC
Confidence 22 223367999999999987643 33322 22233 34447889999998874322 2
Q ss_pred ch---hHhhhhhhhhhhhccchhhHHHHHHHhhcCCC-CCCChHHHHHHHHHhhcccC
Q 021611 253 EY---FYASLYAGLFYESQKKADAAKLHILAACESPY-GQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 253 d~---~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~-~~~s~~~~~~la~~~~~~~~ 306 (310)
+. ..+++++|.++..+|++++|+.+|++++..+. +....+.++.+|.++.++|+
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr 223 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN 223 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC
Confidence 22 34789999999999999999999999997443 33356788899999988885
No 109
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.34 E-value=8.6e-14 Score=115.16 Aligned_cols=90 Identities=8% Similarity=0.127 Sum_probs=84.5
Q ss_pred hhcccchhhhhhhhcCCCC------------------chhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHH
Q 021611 101 RLFIPSVSGIWDALTGGNN------------------NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLW 162 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~------------------~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~ 162 (310)
.+.+.+|...|.+++. + +|.++.+|+++|.+++.+|++++|+.+|++||+++|+++.+++
T Consensus 24 ~~~~~~A~~~y~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 101 (162)
T 3rkv_A 24 QKDYKEAIDAYRDALT--RLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALF 101 (162)
T ss_dssp TTCHHHHHHHHHHHHH--HHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHH--HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHH
Confidence 3456778899998887 6 8888999999999999999999999999999999999999999
Q ss_pred hhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611 163 QRGLSLYYLDRFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 163 ~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~ 192 (310)
.+|.++..+|++++|+.+|+++++++|+++
T Consensus 102 ~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 102 RRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 999999999999999999999999999886
No 110
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=2.7e-13 Score=126.97 Aligned_cols=182 Identities=13% Similarity=0.056 Sum_probs=133.3
Q ss_pred cccchhhhhhhhcCC-----CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh------hHHHhhccchhhh
Q 021611 103 FIPSVSGIWDALTGG-----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK------AYLWQRGLSLYYL 171 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~-----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~------~a~~~~G~a~~~l 171 (310)
....|...+.+++.. ...|..+.++.++|.++..+|++++|++.|++|+++.|... .++.++|.++..+
T Consensus 158 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 445566666666541 12667788999999999999999999999999999976543 5899999999999
Q ss_pred hhhhhhhhhhhhhhcc-----C-CCCCccceeeeehhhhhcChHHHHHhHHHhcC------CChh--hHHHHHHhhcCCC
Q 021611 172 DRFEEGAEQFRIDVAQ-----N-PNDTEESIWCFLCEAQLYGVDEARNRFLEVGR------DPRP--VMREAYNMFKGGG 237 (310)
Q Consensus 172 g~~~eA~~~f~~Al~l-----~-P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~------d~~~--~~~~a~~l~~~~~ 237 (310)
|++++|++.|++++++ + |..+.++...+.+...+|++++|...+.++.. ++.. .+.....++...+
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999994 4 54433323233333478999999998876422 2111 1122334455566
Q ss_pred C---hHHHHHHhcCC-CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 238 D---PEKLVAAFSSG-RENEYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 238 ~---~e~al~~~~~~-~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
+ .++++..+... ..++...++..+|.+|..+|++++|..+|++++++
T Consensus 318 ~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 318 DEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6 66677666533 33445556778999999999999999999999984
No 111
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.33 E-value=8.6e-14 Score=111.24 Aligned_cols=100 Identities=10% Similarity=0.098 Sum_probs=87.2
Q ss_pred Cchh-HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcccee
Q 021611 119 NNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIW 197 (310)
Q Consensus 119 ~~P~-~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~ 197 (310)
.+|. +...++.+|.+++..|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..
T Consensus 11 ~~p~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 11 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp SCGGGGCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3443 234688999999999999999999999999999999999999999999999999999999999999999875444
Q ss_pred eeehhhhhcChHHHHHhHHHh
Q 021611 198 CFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 198 ~~l~~a~l~~~~eA~~~l~~~ 218 (310)
.+.+....|++++|+..+.++
T Consensus 91 la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 444455789999999988874
No 112
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.33 E-value=7.6e-13 Score=101.60 Aligned_cols=123 Identities=22% Similarity=0.269 Sum_probs=97.1
Q ss_pred CCchhH-HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccce
Q 021611 118 NNNSRE-AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESI 196 (310)
Q Consensus 118 ~~~P~~-~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~ 196 (310)
+.+|.. +.+|+.+|.++...|++++|++.|+++++.+|++..+++.+|.++...|++++|+..|+++++++|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 78 (125)
T 1na0_A 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE--- 78 (125)
T ss_dssp -----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---
T ss_pred CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH---
Confidence 356755 7899999999999999999999999999999999999999999999999999999999999998886532
Q ss_pred eeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHH
Q 021611 197 WCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKL 276 (310)
Q Consensus 197 ~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~ 276 (310)
.++.+|.++...|++++|+.
T Consensus 79 ------------------------------------------------------------~~~~la~~~~~~~~~~~A~~ 98 (125)
T 1na0_A 79 ------------------------------------------------------------AWYNLGNAYYKQGDYDEAIE 98 (125)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHhcCHHHHHH
Confidence 11245666667788888888
Q ss_pred HHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611 277 HILAACESPYGQRSDDYMAALAKVHSLCR 305 (310)
Q Consensus 277 ~~~kAl~~~~~~~s~~~~~~la~~~~~~~ 305 (310)
+|+++++.. +.+.+.+..++.++...|
T Consensus 99 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 99 YYQKALELD--PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHhcc
Confidence 888888733 345577777777776544
No 113
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.33 E-value=4.1e-13 Score=114.68 Aligned_cols=149 Identities=9% Similarity=0.088 Sum_probs=111.2
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh----------------hHHHhhcc
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK----------------AYLWQRGL 166 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~----------------~a~~~~G~ 166 (310)
.++.+.+.|+.... ..+..+..+..+|..++..|++++|+..|++++++.|+++ .+++++|.
T Consensus 19 ~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 19 FQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp ---CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 45667788876665 6778899999999999999999999999999999999887 89999999
Q ss_pred chhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHh
Q 021611 167 SLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAF 246 (310)
Q Consensus 167 a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~ 246 (310)
++..+|++++|+..|+++++++|+++.++...+.+...+|++++|+..+.++..
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-------------------------- 150 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS-------------------------- 150 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--------------------------
Confidence 999999999999999999999998877555444445577888888777664210
Q ss_pred cCCCCcchhHhhhhhhhhhhhccchhhHH-HHHHHhh
Q 021611 247 SSGRENEYFYASLYAGLFYESQKKADAAK-LHILAAC 282 (310)
Q Consensus 247 ~~~~~~d~~~a~~~lG~~~~~~G~~d~A~-~~~~kAl 282 (310)
..|+...++..++.++..+|+.+++. ..|.+..
T Consensus 151 ---~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 151 ---LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp ---HSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred ---HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01233445667888888888888877 4444433
No 114
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.33 E-value=9.4e-14 Score=128.35 Aligned_cols=206 Identities=9% Similarity=-0.047 Sum_probs=133.5
Q ss_pred cccchhhhhhhhcCC----CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhhhh
Q 021611 103 FIPSVSGIWDALTGG----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYYLD 172 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~lg 172 (310)
...+|...+.+++.. ...|..+.++..+|.++...|++++|+..|++++++.|.. ..++.++|.++...|
T Consensus 62 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 62 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 141 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence 345566666665431 1366778888999999999999999999999999887765 348888999999999
Q ss_pred h--------------------hhhhhhhhhhhhccCCCCC----ccceeeeehhh--hhcChHHHHHhHHHhcC----CC
Q 021611 173 R--------------------FEEGAEQFRIDVAQNPNDT----EESIWCFLCEA--QLYGVDEARNRFLEVGR----DP 222 (310)
Q Consensus 173 ~--------------------~~eA~~~f~~Al~l~P~d~----~~~~~~~l~~a--~l~~~~eA~~~l~~~~~----d~ 222 (310)
+ +++|++.|++++++.+... .+..+..++.. ..|++++|+..+.++.. .+
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 9 8888888888887632211 11233333333 67888888887765321 11
Q ss_pred h-h----hHHHHHHhhcCCCChHHHHHHhcCC--------CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCC
Q 021611 223 R-P----VMREAYNMFKGGGDPEKLVAAFSSG--------RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQR 289 (310)
Q Consensus 223 ~-~----~~~~a~~l~~~~~~~e~al~~~~~~--------~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~ 289 (310)
. + .+......+...|++++|+..+... .......++..+|.++..+|++++|+.+|++++++.....
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 1 1 1112222344467777776655321 1112245666788888888888888888888887421111
Q ss_pred C----hHHHHHHHHHhhcccCCc
Q 021611 290 S----DDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 290 s----~~~~~~la~~~~~~~~~~ 308 (310)
+ ...+..+|.++..+|+|.
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHH
Confidence 1 345667788888888763
No 115
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=104.18 Aligned_cols=122 Identities=16% Similarity=0.239 Sum_probs=101.3
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccc
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEES 195 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~ 195 (310)
.+|.++..++.+|..++..|++++|+..|+++++++|++ ..+++++|.++..+|++++|++.|+++++++|+++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 100 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK-- 100 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH--
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH--
Confidence 678889999999999999999999999999999999997 899999999999999999999999999999886532
Q ss_pred eeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHH
Q 021611 196 IWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAK 275 (310)
Q Consensus 196 ~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~ 275 (310)
+++.+|.++..+|++++|+
T Consensus 101 -------------------------------------------------------------~~~~~a~~~~~~~~~~~A~ 119 (148)
T 2dba_A 101 -------------------------------------------------------------ALYRRSQALEKLGRLDQAV 119 (148)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHTCHHHHH
T ss_pred -------------------------------------------------------------HHHHHHHHHHHcCCHHHHH
Confidence 1234667777788888888
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611 276 LHILAACESPYGQRSDDYMAALAKVHSLCR 305 (310)
Q Consensus 276 ~~~~kAl~~~~~~~s~~~~~~la~~~~~~~ 305 (310)
.+|+++++.. +.+.+.+..++.+....+
T Consensus 120 ~~~~~al~~~--p~~~~~~~~l~~~~~~~~ 147 (148)
T 2dba_A 120 LDLQRCVSLE--PKNKVFQEALRNISGPSS 147 (148)
T ss_dssp HHHHHHHHHC--SSCHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHHHhhcC
Confidence 8888888743 334566667777665543
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.32 E-value=8e-13 Score=131.01 Aligned_cols=141 Identities=14% Similarity=0.043 Sum_probs=98.8
Q ss_pred ccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHH
Q 021611 137 QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL 216 (310)
Q Consensus 137 ~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~ 216 (310)
.|++++|++.|+++++++|++..+++++|.++...|++++|++.|+++++++|+++..+...+.+...+|++++|+..+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999987754433334446788888877766
Q ss_pred HhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHH
Q 021611 217 EVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAA 296 (310)
Q Consensus 217 ~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~ 296 (310)
++.. ..++...+++.+|.++..+|++++|+.+|+++++.. +.+.+.+.+
T Consensus 82 ~al~-----------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 130 (568)
T 2vsy_A 82 QASD-----------------------------AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQ 130 (568)
T ss_dssp HHHH-----------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHh-----------------------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 5210 123345567789999999999999999999999954 345688899
Q ss_pred HHHHhhcccCCc
Q 021611 297 LAKVHSLCRNWS 308 (310)
Q Consensus 297 la~~~~~~~~~~ 308 (310)
++.++..+++|.
T Consensus 131 l~~~~~~~~~~g 142 (568)
T 2vsy_A 131 LLNWRRRLCDWR 142 (568)
T ss_dssp HHHHHHHTTCCT
T ss_pred HHHHHHHhhccc
Confidence 999999997774
No 117
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.32 E-value=1.2e-13 Score=111.15 Aligned_cols=88 Identities=9% Similarity=0.112 Sum_probs=81.6
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh-------hHHHhhccchhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-------AYLWQRGLSLYYLDR 173 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-------~a~~~~G~a~~~lg~ 173 (310)
.+.+.+|...|++++. ++|+++.+|+++|.++..+|++++|+++|+++|+++|++. .++.++|.++..+|+
T Consensus 21 ~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~ 98 (127)
T 4gcn_A 21 QKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQND 98 (127)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCC
Confidence 3467789999999998 9999999999999999999999999999999999999864 478889999999999
Q ss_pred hhhhhhhhhhhhccCCC
Q 021611 174 FEEGAEQFRIDVAQNPN 190 (310)
Q Consensus 174 ~~eA~~~f~~Al~l~P~ 190 (310)
+++|++.|+++++.+|+
T Consensus 99 ~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 99 LSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhCcC
Confidence 99999999999999885
No 118
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.32 E-value=2.5e-13 Score=107.86 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=87.6
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceee
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWC 198 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~ 198 (310)
.+|.++..|+.+|.+++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.++...
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999988755544
Q ss_pred eehhhhhcChHHHHHhHHH
Q 021611 199 FLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 199 ~l~~a~l~~~~eA~~~l~~ 217 (310)
+.+...+|++++|+..+.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 4455578999999888776
No 119
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=3.5e-13 Score=126.24 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=74.1
Q ss_pred cccchhhhhhhhcCC----CCchhHHHHHHHhhhhheeccccccchhhhhhccccCc-------chhhHHHhhccchhhh
Q 021611 103 FIPSVSGIWDALTGG----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP-------RQKAYLWQRGLSLYYL 171 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P-------~~~~a~~~~G~a~~~l 171 (310)
...+|...+.+++.. .-+|..+.+++.+|.++..+|++++|+..|++|+++.+ ....++.++|.++..+
T Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~ 197 (383)
T 3ulq_A 118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL 197 (383)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh
Confidence 455566666666551 11445667778888888888888888888888877733 3345777788888888
Q ss_pred hhhhhhhhhhhhhhccCCCCCc----cceeeeehh--hhhcChHHHHHhHHH
Q 021611 172 DRFEEGAEQFRIDVAQNPNDTE----ESIWCFLCE--AQLYGVDEARNRFLE 217 (310)
Q Consensus 172 g~~~eA~~~f~~Al~l~P~d~~----~~~~~~l~~--a~l~~~~eA~~~l~~ 217 (310)
|++++|++.|++++++.|+... +..+..++. ..+|++++|+..+.+
T Consensus 198 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 198 KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888888777554321 112223332 356777777776655
No 120
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.31 E-value=5.2e-13 Score=103.29 Aligned_cols=131 Identities=21% Similarity=0.180 Sum_probs=104.6
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhh
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ 204 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~ 204 (310)
.+|+.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|+++..+.....+...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999876532222222335
Q ss_pred hcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 205 LYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 205 l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
.|++++|...+.++.. ..++....++.+|.++..+|++++|+.+|+++++.
T Consensus 82 ~~~~~~A~~~~~~~~~-----------------------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE-----------------------------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHH-----------------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH-----------------------------hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6667777666554210 01222345667899999999999999999999983
No 121
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.31 E-value=2.4e-12 Score=97.95 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=94.1
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehh
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCE 202 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~ 202 (310)
.+..++.+|..+...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------- 73 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK--------- 73 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH---------
Confidence 46789999999999999999999999999999999999999999999999999999999999999886532
Q ss_pred hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhh
Q 021611 203 AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAAC 282 (310)
Q Consensus 203 a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl 282 (310)
+++.+|.++..+|++++|+.+|++++
T Consensus 74 ------------------------------------------------------~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 74 ------------------------------------------------------GYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 12246667777888888888888888
Q ss_pred cCCCCCCChHHHHHHHHHh
Q 021611 283 ESPYGQRSDDYMAALAKVH 301 (310)
Q Consensus 283 ~~~~~~~s~~~~~~la~~~ 301 (310)
+.. +.+...+..++.+.
T Consensus 100 ~~~--~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 100 KHE--ANNPQLKEGLQNME 116 (118)
T ss_dssp TTC--TTCHHHHHHHHHHH
T ss_pred HcC--CCCHHHHHHHHHhh
Confidence 743 34556666666654
No 122
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.30 E-value=1.7e-13 Score=133.72 Aligned_cols=169 Identities=11% Similarity=0.003 Sum_probs=118.4
Q ss_pred CchhHHHHHHHhhhhh------------eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 119 NNSREAVVAIRRGMLL------------FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~------------~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
++|+. +|..+|... ..++++++|++.|+++++.+|+...++.++|.+++..|+|++|+..|+++++
T Consensus 219 i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~ 296 (457)
T 1kt0_A 219 LGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS 296 (457)
T ss_dssp ECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 67775 777777543 4788999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhh
Q 021611 187 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLF 264 (310)
Q Consensus 187 l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~ 264 (310)
++|++.. .+ . ...+...... ...+......+...+++++|+..+.. ...++...+++.+|.+
T Consensus 297 ~~p~~~~--~~----~----~~~~~~~~~~------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a 360 (457)
T 1kt0_A 297 WLEMEYG--LS----E----KESKASESFL------LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEA 360 (457)
T ss_dssp HHTTCCS--CC----H----HHHHHHHHHH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred Hhccccc--CC----h----HHHHHHHHHH------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9998753 00 0 0000000000 00011111122234555555555532 1234567788899999
Q ss_pred hhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccCC
Q 021611 265 YESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 265 ~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~~ 307 (310)
|..+|++++|+.+|++|+++.. .+...+..++.++..+|++
T Consensus 361 ~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 361 QLLMNEFESAKGDFEKVLEVNP--QNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999653 3457788888888777654
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.30 E-value=2e-13 Score=111.02 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=99.4
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
.+..|...|.+++. .+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+
T Consensus 28 ~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 105 (166)
T 1a17_A 28 DYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE 105 (166)
T ss_dssp CHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 56678899999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCccceeeeeh--hhhhcChHHHHHhHHH
Q 021611 183 IDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFLE 217 (310)
Q Consensus 183 ~Al~l~P~d~~~~~~~~l~--~a~l~~~~eA~~~l~~ 217 (310)
++++++|++.....+...+ ....|++++|+..+.+
T Consensus 106 ~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 106 TVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999999987754334444 2256778888877664
No 124
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.30 E-value=4.9e-13 Score=112.40 Aligned_cols=153 Identities=8% Similarity=-0.093 Sum_probs=121.1
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchh-hhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLY-YLDRFEEGAE 179 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~-~lg~~~eA~~ 179 (310)
.+...+|...|.+++. .+|+++.+|+.+|.++..+|++++|+..|+++++++| ++..+..+|.+.. ..++..+|++
T Consensus 19 ~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~ 95 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELK 95 (176)
T ss_dssp TTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred cCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHH
Confidence 3456789999999998 9999999999999999999999999999999999999 7776666664433 3345667899
Q ss_pred hhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhh
Q 021611 180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASL 259 (310)
Q Consensus 180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~ 259 (310)
.|+++++++|+++..+...+.+....|++++|+..+.++.. ..+......++.
T Consensus 96 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---------------------------~~p~~~~~~a~~ 148 (176)
T 2r5s_A 96 RLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK---------------------------VNLGAQDGEVKK 148 (176)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---------------------------TCTTTTTTHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH---------------------------hCcccChHHHHH
Confidence 99999999999987555444445577888888877765211 111122244677
Q ss_pred hhhhhhhhccchhhHHHHHHHhhc
Q 021611 260 YAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 260 ~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
.+|.++..+|+.++|..+|++++.
T Consensus 149 ~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 149 TFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHH
Confidence 899999999999999999999986
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.29 E-value=3.4e-13 Score=112.56 Aligned_cols=119 Identities=11% Similarity=0.044 Sum_probs=101.2
Q ss_pred ccchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccc-hhhhhhh--
Q 021611 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLS-LYYLDRF-- 174 (310)
Q Consensus 98 ~~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a-~~~lg~~-- 174 (310)
+...+...+|...+.+++. .+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4444566778899999998 9999999999999999999999999999999999999999999999999 7899999
Q ss_pred hhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 175 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 175 ~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
++|+..|+++++++|+++..+...+.+....|++++|...+.++
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999999999998875444444444789999999988763
No 126
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.29 E-value=1e-13 Score=105.99 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=67.3
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND 191 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d 191 (310)
++.+|+.+|.+++..|++++|++.|+++++++|+++.+++++|.++..+|++++|++.|+++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 578999999999999999999999999999999999999999999999999999999999999999987
No 127
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.28 E-value=1.6e-13 Score=122.23 Aligned_cols=206 Identities=10% Similarity=-0.029 Sum_probs=144.2
Q ss_pred cccchhhhhhhhcCC----CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh------hHHHhhccchhhhh
Q 021611 103 FIPSVSGIWDALTGG----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK------AYLWQRGLSLYYLD 172 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~------~a~~~~G~a~~~lg 172 (310)
...++...+.+++.. ...|..+.++..+|.++...|++++|+..|++++++.|... .++..+|.++...|
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 58 DYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 455677777766541 13677889999999999999999999999999999987653 38999999999999
Q ss_pred h--------------------hhhhhhhhhhhhccCCCCC----ccceeeeehh--hhhcChHHHHHhHHHhcC------
Q 021611 173 R--------------------FEEGAEQFRIDVAQNPNDT----EESIWCFLCE--AQLYGVDEARNRFLEVGR------ 220 (310)
Q Consensus 173 ~--------------------~~eA~~~f~~Al~l~P~d~----~~~~~~~l~~--a~l~~~~eA~~~l~~~~~------ 220 (310)
+ +++|++.+++++++.+... ....+..++. ...|++++|...+.++..
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 9 9999999999988632211 1123333333 367999999998776422
Q ss_pred CChh---hHHHHHHhhcCCCChHHHHHHhcCC--------CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCC
Q 021611 221 DPRP---VMREAYNMFKGGGDPEKLVAAFSSG--------RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQR 289 (310)
Q Consensus 221 d~~~---~~~~a~~l~~~~~~~e~al~~~~~~--------~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~ 289 (310)
++.. .+......+...|++++++..+... .......++..+|.++..+|++++|+.+|+++++......
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1111 1112222344467888876665421 1122355667799999999999999999999998421111
Q ss_pred ----ChHHHHHHHHHhhcccCCc
Q 021611 290 ----SDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 290 ----s~~~~~~la~~~~~~~~~~ 308 (310)
....+..+|.++..+|++.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~ 320 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHD 320 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChH
Confidence 1346678899999998864
No 128
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.28 E-value=2.6e-12 Score=111.98 Aligned_cols=181 Identities=13% Similarity=0.093 Sum_probs=131.5
Q ss_pred cchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhh----hhhhhhhh
Q 021611 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD----RFEEGAEQ 180 (310)
Q Consensus 105 ~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg----~~~eA~~~ 180 (310)
++|...|.++.. ..++.+++.+|.++...|++++|+..|+++++. +++.+++++|.++.. + ++++|++.
T Consensus 3 ~eA~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 356677777664 367999999999999999999999999999875 578999999999998 7 99999999
Q ss_pred hhhhhccCCCCCccceeeeehhh--h----hcChHHHHHhHHHhcC-CC----hhhHHHHHHhh-cC---CCChHHHHHH
Q 021611 181 FRIDVAQNPNDTEESIWCFLCEA--Q----LYGVDEARNRFLEVGR-DP----RPVMREAYNMF-KG---GGDPEKLVAA 245 (310)
Q Consensus 181 f~~Al~l~P~d~~~~~~~~l~~a--~----l~~~~eA~~~l~~~~~-d~----~~~~~~a~~l~-~~---~~~~e~al~~ 245 (310)
|+++++ ++++.+ +..++.. . .+++++|+..+.++.. ++ ...+..+..++ .+ .+++++++..
T Consensus 76 ~~~A~~--~g~~~a--~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVE--AGSKSG--EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHH--TTCHHH--HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHH--CCCHHH--HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999965 455654 3344433 3 5689999999988654 34 23333332233 32 4568888887
Q ss_pred hcCCCC-cchhHhhhhhhhhhhhc-c-----chhhHHHHHHHhhcCCCCCCChHHHHHHHHH
Q 021611 246 FSSGRE-NEYFYASLYAGLFYESQ-K-----KADAAKLHILAACESPYGQRSDDYMAALAKV 300 (310)
Q Consensus 246 ~~~~~~-~d~~~a~~~lG~~~~~~-G-----~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~ 300 (310)
+..... +....+.+.+|.+|... | ++++|+.+|++|++. | +.+....|+.+
T Consensus 152 ~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~--g--~~~A~~~l~~l 209 (212)
T 3rjv_A 152 FKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE--G--FDTGCEEFDRI 209 (212)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH--T--CHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc--C--CHHHHHHHHHh
Confidence 763321 24455788999988654 3 899999999999993 2 34555555543
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.27 E-value=1.1e-12 Score=109.49 Aligned_cols=129 Identities=9% Similarity=-0.059 Sum_probs=97.0
Q ss_pred HhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh-hhhhcC
Q 021611 129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC-EAQLYG 207 (310)
Q Consensus 129 ~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~-~a~l~~ 207 (310)
..+..+...|++++|++.|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++..+...+.+ ....|+
T Consensus 15 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 15 DPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ 94 (177)
T ss_dssp TTTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred hhhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC
Confidence 3455678899999999999999999999999999999999999999999999999999999887643322222 224556
Q ss_pred h--HHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611 208 V--DEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESP 285 (310)
Q Consensus 208 ~--~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~ 285 (310)
+ ++|+..+.++.. ..|+...+++.+|.++..+|++++|+.+|+++++..
T Consensus 95 ~~~~~A~~~~~~al~-----------------------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 95 HMTAQTRAMIDKALA-----------------------------LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCCHHHHHHHHHHHH-----------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHH-----------------------------hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 5 666665553100 123345567789999999999999999999999964
Q ss_pred C
Q 021611 286 Y 286 (310)
Q Consensus 286 ~ 286 (310)
.
T Consensus 146 p 146 (177)
T 2e2e_A 146 S 146 (177)
T ss_dssp C
T ss_pred C
Confidence 3
No 130
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.26 E-value=1.2e-12 Score=119.53 Aligned_cols=145 Identities=11% Similarity=0.025 Sum_probs=116.1
Q ss_pred chhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 100 ~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
+.+...+|...|.+++. ++|+++.+++.+|.++..+|++++|++.|+++++++|+....+...+..+...++.++|++
T Consensus 129 ~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~ 206 (287)
T 3qou_A 129 QESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQ 206 (287)
T ss_dssp HTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHH
Confidence 34467789999999998 9999999999999999999999999999999999999888888889999999999999999
Q ss_pred hhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh---cCCC--hhhHHHHHHhhcCCCChHHHHHHh
Q 021611 180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV---GRDP--RPVMREAYNMFKGGGDPEKLVAAF 246 (310)
Q Consensus 180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~---~~d~--~~~~~~a~~l~~~~~~~e~al~~~ 246 (310)
.|+++++++|+++++.+..+......|++++|+..+.++ .|+. .........++...|+.+++...+
T Consensus 207 ~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 207 QLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 999999999999885444444455789999999988774 3333 222233334455555555554443
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.26 E-value=5.2e-13 Score=104.37 Aligned_cols=92 Identities=10% Similarity=0.142 Sum_probs=86.4
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.+.+.+|...|.+++. .+|+++.+++.+|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|++.
T Consensus 29 ~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 106 (133)
T 2lni_A 29 KGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV 106 (133)
T ss_dssp TTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHH
Confidence 3356778999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCcc
Q 021611 181 FRIDVAQNPNDTEE 194 (310)
Q Consensus 181 f~~Al~l~P~d~~~ 194 (310)
|+++++++|++...
T Consensus 107 ~~~~~~~~p~~~~~ 120 (133)
T 2lni_A 107 YQKALDLDSSCKEA 120 (133)
T ss_dssp HHHHHHHCGGGTHH
T ss_pred HHHHHHhCCCchHH
Confidence 99999999987653
No 132
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.24 E-value=4.4e-13 Score=131.76 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=67.1
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL 200 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l 200 (310)
|+.+.+++.+|.++..+|++++|++.|++|++++|++..+++++|.++..+|++++|++.|+++++++|+++.++...+.
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777777776654333333
Q ss_pred hhhhhcChHHHHHhHHH
Q 021611 201 CEAQLYGVDEARNRFLE 217 (310)
Q Consensus 201 ~~a~l~~~~eA~~~l~~ 217 (310)
+...+|++++|+..+.+
T Consensus 83 ~~~~~g~~~eA~~~~~~ 99 (477)
T 1wao_1 83 SNMALGKFRAALRDYET 99 (477)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 33356667776666554
No 133
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.23 E-value=2.3e-12 Score=122.54 Aligned_cols=170 Identities=9% Similarity=-0.053 Sum_probs=130.4
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheecc-ccccchhhhhhccccCcchhhHHHhhccchhhh-h-hhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG-DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL-D-RFEEGAE 179 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g-~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l-g-~~~eA~~ 179 (310)
+.+++..++++++. +||+++.+|+.||.++..+| +++++++.++++|+.+|++..+|+.|+.++..+ + +++++++
T Consensus 69 ~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 66789999999998 99999999999999999999 599999999999999999999999999999998 8 9999999
Q ss_pred hhhhhhccCCCCCccceeeeehhhhhcChH--------HHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCC
Q 021611 180 QFRIDVAQNPNDTEESIWCFLCEAQLYGVD--------EARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRE 251 (310)
Q Consensus 180 ~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~--------eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~ 251 (310)
.++++++++|++..++.++..+..++++++ ++++.+.+ .+. .+
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k---------------------------~I~--~d 197 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE---------------------------MLR--VD 197 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---------------------------HHH--HC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHH---------------------------HHH--hC
Confidence 999999999999874333333333444433 22222111 111 23
Q ss_pred cchhHhhhhhhhhhhhccc-------hhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhccc
Q 021611 252 NEYFYASLYAGLFYESQKK-------ADAAKLHILAACESPYGQRSDDYMAALAKVHSLCR 305 (310)
Q Consensus 252 ~d~~~a~~~lG~~~~~~G~-------~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~ 305 (310)
+....|+.++|.++...|+ ++++++++++++++.. .+.-.|..+..+....|
T Consensus 198 p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P--~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 198 GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP--HNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcC
Confidence 4556778888888888876 6899999999998543 34566666655555443
No 134
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.23 E-value=1.3e-12 Score=108.01 Aligned_cols=97 Identities=12% Similarity=0.145 Sum_probs=88.5
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhcccc------------------CcchhhHHHhhccchhhhhhhhhhhhhhhh
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL------------------DPRQKAYLWQRGLSLYYLDRFEEGAEQFRI 183 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l------------------~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~ 183 (310)
..+..+..+|..++..|+|++|+..|++++++ +|.+..+++++|.++..+|+|++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45789999999999999999999999999999 888889999999999999999999999999
Q ss_pred hhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 184 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 184 Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
+++++|+++.+++..+.+...+|++++|+..+.++
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 99999999887666666666899999999988763
No 135
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=6.2e-12 Score=117.86 Aligned_cols=181 Identities=10% Similarity=-0.138 Sum_probs=132.0
Q ss_pred cccchhhhhhhhcCC-----CCchhHHHHHHHhhhhheeccccccchhhhhhccccCc------chhhHHHhhccchhhh
Q 021611 103 FIPSVSGIWDALTGG-----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP------RQKAYLWQRGLSLYYL 171 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~-----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P------~~~~a~~~~G~a~~~l 171 (310)
....|...+.+++.. ...+..+.++.++|.++..+|++++|++.|++|+++.+ ....++.++|.++..+
T Consensus 156 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 445566666666541 12456788999999999999999999999999999843 2356889999999999
Q ss_pred hhhhhhhhhhhhhhc-----cCCCCCccceeeeehhhhhcChHHHHHhHHHhc---C---CCh--hhHHHHHHhhcCCCC
Q 021611 172 DRFEEGAEQFRIDVA-----QNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG---R---DPR--PVMREAYNMFKGGGD 238 (310)
Q Consensus 172 g~~~eA~~~f~~Al~-----l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~---~---d~~--~~~~~a~~l~~~~~~ 238 (310)
|++++|++.|+++++ .+|..+.+....+.+..++|++++|...+.++. + ++. .....+..++...++
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999 677654433333333447899999999887632 1 221 112233345555666
Q ss_pred ---hHHHHHHhcCC-CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 239 ---PEKLVAAFSSG-RENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 239 ---~e~al~~~~~~-~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
.++++..+... ..++.......+|.+|..+|++++|..+|+++++
T Consensus 316 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 316 ERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66676666532 3334455566799999999999999999999998
No 136
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.22 E-value=1.6e-12 Score=121.80 Aligned_cols=147 Identities=13% Similarity=0.069 Sum_probs=95.2
Q ss_pred hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh-----------------hHHHhhccchh
Q 021611 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-----------------AYLWQRGLSLY 169 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-----------------~a~~~~G~a~~ 169 (310)
+...|+..+. ..|+.+..++.+|..++..|+|++|+..|++|++++|++. .+++++|.++.
T Consensus 164 ~~~~~~~~~~--~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~ 241 (338)
T 2if4_A 164 GKARSDMTVE--ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI 241 (338)
T ss_dssp CBTTTBCCHH--HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccccCCHH--HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3455655555 6788999999999999999999999999999999999987 48999999999
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCC
Q 021611 170 YLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG 249 (310)
Q Consensus 170 ~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~ 249 (310)
.+|+|++|+..|+++++++|+++.+++.++.+...+|++++|+..+.++...
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l---------------------------- 293 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY---------------------------- 293 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------------
Confidence 9999999999999999999998876555555555788888888887764321
Q ss_pred CCcchhHhhhhhhhh-hhhccchhhHHHHHHHhhcC
Q 021611 250 RENEYFYASLYAGLF-YESQKKADAAKLHILAACES 284 (310)
Q Consensus 250 ~~~d~~~a~~~lG~~-~~~~G~~d~A~~~~~kAl~~ 284 (310)
.|+...++..++.+ ....++.+++...|.+++..
T Consensus 294 -~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 294 -APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ------------------------------------
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 11122233345544 34456778888888888874
No 137
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.22 E-value=6.4e-13 Score=102.29 Aligned_cols=75 Identities=12% Similarity=0.243 Sum_probs=69.3
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
.+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+|+++|.++..+|++++|++.|++++++.|++..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999886543
No 138
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.21 E-value=3.5e-12 Score=98.89 Aligned_cols=127 Identities=15% Similarity=0.217 Sum_probs=105.0
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL 200 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l 200 (310)
|..+..|+.+|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|+..|+++++++|++... +
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~--- 75 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--Y--- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--H---
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh--H---
Confidence 46788999999999999999999999999999999999999999999999999999999999999998854320 0
Q ss_pred hhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHH
Q 021611 201 CEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILA 280 (310)
Q Consensus 201 ~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~k 280 (310)
.....+++.+|.++..+|++++|+.+|++
T Consensus 76 ---------------------------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 76 ---------------------------------------------------RQIAKAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 00122345688999999999999999999
Q ss_pred hhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 281 ACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 281 Al~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
+++.. + +++....++.+....+.
T Consensus 105 ~~~~~--~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 105 SLAEH--R-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHC--C-CHHHHHHHHHHHHHHHH
T ss_pred HHHhC--C-CHHHHHHHHHHHHHHHH
Confidence 99943 2 46777788777665543
No 139
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=5e-12 Score=115.14 Aligned_cols=160 Identities=8% Similarity=-0.044 Sum_probs=112.4
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcc------hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc----c
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR------QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE----E 194 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~------~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~----~ 194 (310)
..+...|.++..+|++++|++.|++|+++.+. ...++.++|.++..+|++++|+.+|++++++.|+... +
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35555678899999999999999999999542 3678999999999999999999999999999875321 1
Q ss_pred ceeeeehhh--h-hcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccch
Q 021611 195 SIWCFLCEA--Q-LYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKA 271 (310)
Q Consensus 195 ~~~~~l~~a--~-l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~ 271 (310)
..+..++.. . +|++++|+..+.++ ..++... .........+..+|.++..+|++
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~A-----------l~~~~~~------------~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELA-----------GEWYAQD------------QSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH-----------HHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHhC------------CChHHHHHHHHHHHHHHHHhCCH
Confidence 123333333 3 26666666655542 1111100 00011133456799999999999
Q ss_pred hhHHHHHHHhhcCCCCCCCh-----HHHHHHHHHhhcccCC
Q 021611 272 DAAKLHILAACESPYGQRSD-----DYMAALAKVHSLCRNW 307 (310)
Q Consensus 272 d~A~~~~~kAl~~~~~~~s~-----~~~~~la~~~~~~~~~ 307 (310)
++|+.+|++++++....... +++.++|.++..+|++
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999964332221 2677899999998875
No 140
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=6.4e-12 Score=109.84 Aligned_cols=169 Identities=14% Similarity=0.060 Sum_probs=124.0
Q ss_pred chhcccchhhhhhhhcCCCCchhH---HHHHHHhhhhheeccccccchhhhhhccccCcchhh---HHHhhccchhh---
Q 021611 100 RRLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA---YLWQRGLSLYY--- 170 (310)
Q Consensus 100 ~~~~~~~a~~~~~~ai~~~~~P~~---~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~---a~~~~G~a~~~--- 170 (310)
+.+.+.+|...+++++. .+|++ +.+++.+|.++..+|++++|++.|+++++++|+++. +++.+|.++..
T Consensus 16 ~~g~~~~A~~~~~~~~~--~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~ 93 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDN--RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDD 93 (225)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhh
Confidence 34467789999999987 77765 589999999999999999999999999999999865 88999998876
Q ss_pred ---------------hhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcC
Q 021611 171 ---------------LDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKG 235 (310)
Q Consensus 171 ---------------lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~ 235 (310)
.|++++|+..|+++++..|+++.+ +.. ..+++...+...... +..+. .+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a--~~a--~~~l~~~~~~~~~~~---------~~~a~-~~~~ 159 (225)
T 2yhc_A 94 SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT--TDA--TKRLVFLKDRLAKYE---------YSVAE-YYTE 159 (225)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTCTTCTTH--HHH--HHHHHHHHHHHHHHH---------HHHHH-HHHH
T ss_pred hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH--HHH--HHHHHHHHHHHHHHH---------HHHHH-HHHH
Confidence 589999999999999999998753 211 111111111111000 11122 2333
Q ss_pred CCChHHHHHHhcC----CC-CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 236 GGDPEKLVAAFSS----GR-ENEYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 236 ~~~~e~al~~~~~----~~-~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
.|++++|+..+.. .+ .+....+++.+|.++..+|++++|+..++++...
T Consensus 160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 6778887776652 11 2223467889999999999999999999999883
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.19 E-value=1e-12 Score=101.76 Aligned_cols=90 Identities=19% Similarity=0.286 Sum_probs=85.1
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
....|...+.+++. .+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+
T Consensus 27 ~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 104 (131)
T 2vyi_A 27 NFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYK 104 (131)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 56678889999988 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCcc
Q 021611 183 IDVAQNPNDTEE 194 (310)
Q Consensus 183 ~Al~l~P~d~~~ 194 (310)
++++++|+++..
T Consensus 105 ~~~~~~p~~~~~ 116 (131)
T 2vyi_A 105 KALELDPDNETY 116 (131)
T ss_dssp HHHHHSTTCHHH
T ss_pred HHHhcCccchHH
Confidence 999999988763
No 142
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.19 E-value=3.6e-12 Score=108.61 Aligned_cols=111 Identities=12% Similarity=0.149 Sum_probs=92.0
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
.+.+|...|.+++. | ++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+
T Consensus 21 ~~~~A~~~~~~a~~----~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 95 (213)
T 1hh8_A 21 DWKGALDAFSAVQD----P-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95 (213)
T ss_dssp CHHHHHHHHHTSSS----C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcC----C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHH
Confidence 45667788877764 3 578999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCC----------------ccceeeeehhhhhcChHHHHHhHHHh
Q 021611 183 IDVAQNPNDT----------------EESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 183 ~Al~l~P~d~----------------~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
+++++.|++. ..+...+.+...+|++++|+..+.++
T Consensus 96 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 96 EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999876 32222222333677788887777663
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.19 E-value=4.6e-12 Score=119.66 Aligned_cols=181 Identities=12% Similarity=-0.035 Sum_probs=135.2
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccc----------cccchhhhhhccccCcchhhHHHhhccchhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD 172 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~----------~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg 172 (310)
+.++|..++++++. +||+++.+|+.|+.++..+|+ +++++..++++++.+|++..+|..||.++..+|
T Consensus 45 ~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 45 LDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp CSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccC
Confidence 66788999999998 999999999999999999887 689999999999999999999999999999999
Q ss_pred h--hhhhhhhhhhhhccCCCCCccceeeeehhhhhcC-hHHHHHhHHHh---cCCChhhHH-HHHHhhcC---C------
Q 021611 173 R--FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG-VDEARNRFLEV---GRDPRPVMR-EAYNMFKG---G------ 236 (310)
Q Consensus 173 ~--~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~-~~eA~~~l~~~---~~d~~~~~~-~a~~l~~~---~------ 236 (310)
+ ++++++.++++++++|.+.+++.++..+...++. ++++++.+.+. ++.....+. ....+... .
T Consensus 123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 5 8999999999999999998855545555557777 58888877653 333333332 22222111 0
Q ss_pred ----CChHHHHHHhcC--CCCcchhHhhhhhh-hhhhhc----------cchhhHHHHHHHhhcCC
Q 021611 237 ----GDPEKLVAAFSS--GRENEYFYASLYAG-LFYESQ----------KKADAAKLHILAACESP 285 (310)
Q Consensus 237 ----~~~e~al~~~~~--~~~~d~~~a~~~lG-~~~~~~----------G~~d~A~~~~~kAl~~~ 285 (310)
+.+++++..+.. ...|+...+++|+. ++.... +.++++++.+++.++..
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 224555555542 23566667777654 443333 46899999999999954
No 144
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.17 E-value=1.4e-12 Score=128.11 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=99.0
Q ss_pred cchhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhh
Q 021611 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGA 178 (310)
Q Consensus 99 ~~~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~ 178 (310)
.+.+.+.+|...|.+++. ++|+++.+|+++|.++..+|++++|++.|++|++++|+++.+++++|.++..+|++++|+
T Consensus 17 ~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344467789999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCccceeeeeh--hhhhcChHHHHHhHH
Q 021611 179 EQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFL 216 (310)
Q Consensus 179 ~~f~~Al~l~P~d~~~~~~~~l~--~a~l~~~~eA~~~l~ 216 (310)
+.|+++++++|+++.+......+ ....|++++|++.+.
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999998754444444 335678888888776
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.17 E-value=1.1e-12 Score=111.96 Aligned_cols=92 Identities=14% Similarity=0.167 Sum_probs=85.3
Q ss_pred hhcccchhhhhhhhcCCCCchhHH----------------HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREA----------------VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR 164 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~----------------~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~ 164 (310)
.+.+.+|...|.+++. +.|+++ .+|+++|.++..+|++++|+..|+++++++|++..+++.+
T Consensus 51 ~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 128 (198)
T 2fbn_A 51 KNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKL 128 (198)
T ss_dssp TTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 3456778999999988 888776 8999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611 165 GLSLYYLDRFEEGAEQFRIDVAQNPNDTEE 194 (310)
Q Consensus 165 G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~ 194 (310)
|.++..+|++++|++.|+++++++|+++..
T Consensus 129 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 158 (198)
T 2fbn_A 129 GVANMYFGFLEEAKENLYKAASLNPNNLDI 158 (198)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 999999999999999999999999998763
No 146
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=4.1e-12 Score=110.98 Aligned_cols=150 Identities=13% Similarity=0.014 Sum_probs=107.4
Q ss_pred eeccccccchhhhhhcccc--------CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccC-----CCCCc-cceeeee
Q 021611 135 FRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQN-----PNDTE-ESIWCFL 200 (310)
Q Consensus 135 ~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~-----P~d~~-~~~~~~l 200 (310)
...|++++|+..|++|+++ +|....++..+|.++...|++++|+..|++++++. ++++. ...+..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4467778888888888774 37889999999999999999999999999999884 33322 2234444
Q ss_pred hh--hhhcChHHHHHhHHHhcC--------C-Chh--hHHHHHHhhcCCCChHHHHHHhcC----------CCCcchhHh
Q 021611 201 CE--AQLYGVDEARNRFLEVGR--------D-PRP--VMREAYNMFKGGGDPEKLVAAFSS----------GRENEYFYA 257 (310)
Q Consensus 201 ~~--a~l~~~~eA~~~l~~~~~--------d-~~~--~~~~a~~l~~~~~~~e~al~~~~~----------~~~~d~~~a 257 (310)
+. ...|++++|+..+.++.. + +.. .+......+...|++++|+..+.. ...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 43 378999999998776422 1 111 112222345567888887766541 113445667
Q ss_pred hhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 258 SLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 258 ~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
+..+|.++..+|++++|+.+|++++++
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778999999999999999999999974
No 147
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.17 E-value=6e-11 Score=115.25 Aligned_cols=172 Identities=12% Similarity=0.058 Sum_probs=133.3
Q ss_pred HHHHHHhhhhheecc---ccccchhhhhhccccCcchhhHHHhhccchhhh----hhhhhhhhhhhhhhccCCCCCccce
Q 021611 124 AVVAIRRGMLLFRQG---DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYL----DRFEEGAEQFRIDVAQNPNDTEESI 196 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g---~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~l----g~~~eA~~~f~~Al~l~P~d~~~~~ 196 (310)
+.+++.+|.++...| ++++|+..|.++++.+|.....++++|.++... +++++|++.|+++. |+++.+..
T Consensus 176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~ 252 (452)
T 3e4b_A 176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWV 252 (452)
T ss_dssp TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHH
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHH
Confidence 349999999999999 999999999999999999988889999998776 79999999999998 88887544
Q ss_pred eeeeh-h--hhhcChHHHHHhHHHhc-CCChhhHHH-HHHhhcCC---CChHHHHHHhcCCCCcchhHhhhhhhhhhhh-
Q 021611 197 WCFLC-E--AQLYGVDEARNRFLEVG-RDPRPVMRE-AYNMFKGG---GDPEKLVAAFSSGRENEYFYASLYAGLFYES- 267 (310)
Q Consensus 197 ~~~l~-~--a~l~~~~eA~~~l~~~~-~d~~~~~~~-a~~l~~~~---~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~- 267 (310)
..+.. . ...+++++|+..+.++. .+....+.. ...+..+. .++++++..+.... +....+++.+|.+|..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRG 331 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCC
Confidence 43333 2 24678999999998753 333333222 22223322 37888999988766 7778899999998876
Q ss_pred ---ccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhc
Q 021611 268 ---QKKADAAKLHILAACESPYGQRSDDYMAALAKVHSL 303 (310)
Q Consensus 268 ---~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~ 303 (310)
..++++|+.+|++|.+. .+.+..++||.++..
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARN----GQNSADFAIAQLFSQ 366 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTT----TCTTHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHHHHHHhh----ChHHHHHHHHHHHHh
Confidence 34999999999999993 245778899888763
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.15 E-value=1e-12 Score=104.29 Aligned_cols=89 Identities=13% Similarity=0.184 Sum_probs=84.3
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
+.+.+|...|.+++. ++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|
T Consensus 23 ~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 100 (137)
T 3q49_B 23 RKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANL 100 (137)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 356778999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCC
Q 021611 182 RIDVAQNPNDT 192 (310)
Q Consensus 182 ~~Al~l~P~d~ 192 (310)
+++++++|++.
T Consensus 101 ~~a~~~~p~~~ 111 (137)
T 3q49_B 101 QRAYSLAKEQR 111 (137)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHChhHH
Confidence 99999999743
No 149
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.15 E-value=4e-12 Score=99.02 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=80.4
Q ss_pred chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV 185 (310)
Q Consensus 106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al 185 (310)
.+...+.+++. .+|+++.+|+.+|.++...|++++|+..|+++++++|++..+++++|.++..+|++++|+..|++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46678888998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 021611 186 AQNPNDT 192 (310)
Q Consensus 186 ~l~P~d~ 192 (310)
+++|++.
T Consensus 81 ~~~~~~~ 87 (115)
T 2kat_A 81 AAAQSRG 87 (115)
T ss_dssp HHHHHHT
T ss_pred Hhccccc
Confidence 9998654
No 150
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.15 E-value=6.4e-12 Score=117.72 Aligned_cols=91 Identities=10% Similarity=0.150 Sum_probs=77.8
Q ss_pred hcccchhhhhhhhcCCCCchhHH-----------------HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREA-----------------VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR 164 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~-----------------~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~ 164 (310)
+.+.+|...|.+++. ++|++. .+|+++|.++..+|++++|+.+|+++++++|++..+++++
T Consensus 193 g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 270 (338)
T 2if4_A 193 EKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRR 270 (338)
T ss_dssp SCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 356678888988888 888887 4999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611 165 GLSLYYLDRFEEGAEQFRIDVAQNPNDTEE 194 (310)
Q Consensus 165 G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~ 194 (310)
|.++..+|++++|+.+|+++++++|+++.+
T Consensus 271 g~a~~~~g~~~~A~~~l~~al~l~p~~~~a 300 (338)
T 2if4_A 271 GKAKAELGQMDSARDDFRKAQKYAPDDKAI 300 (338)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTC--------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999999999998774
No 151
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.15 E-value=4.4e-12 Score=97.98 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=98.6
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
+...++...+.+++. .+|+++.+++.+|.++...|++++|+..|+++++++|++..+++.+|.++...|++++|++.|
T Consensus 15 ~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 92 (136)
T 2fo7_A 15 GDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92 (136)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH--cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 356678888888887 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611 182 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 182 ~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~ 217 (310)
+++++.+|+++........+....|++++|...+.+
T Consensus 93 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 93 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 999999998866433222333467888888887765
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=5.7e-12 Score=100.38 Aligned_cols=91 Identities=20% Similarity=0.182 Sum_probs=85.3
Q ss_pred hhcccchhhhhhhhcCCCCchhH---HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEG 177 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~---~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA 177 (310)
.+.+.+|...|.+++. ++|++ +.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|
T Consensus 41 ~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 118 (148)
T 2dba_A 41 CGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQA 118 (148)
T ss_dssp TTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred hCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHH
Confidence 3356778899999998 88987 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCCCCCc
Q 021611 178 AEQFRIDVAQNPNDTE 193 (310)
Q Consensus 178 ~~~f~~Al~l~P~d~~ 193 (310)
+..|+++++++|++..
T Consensus 119 ~~~~~~al~~~p~~~~ 134 (148)
T 2dba_A 119 VLDLQRCVSLEPKNKV 134 (148)
T ss_dssp HHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCcHH
Confidence 9999999999998865
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.13 E-value=1.3e-11 Score=103.73 Aligned_cols=156 Identities=13% Similarity=0.038 Sum_probs=113.7
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccc------cCcchhhHHHhhccchhhhhhhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE------LDPRQKAYLWQRGLSLYYLDRFEEG 177 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~------l~P~~~~a~~~~G~a~~~lg~~~eA 177 (310)
..+|...+..... ..+..+.++..+|.++...|++++|+..|+++++ ..|....++.++|.++...|++++|
T Consensus 8 ~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 85 (203)
T 3gw4_A 8 YALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85 (203)
T ss_dssp HHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3445553333332 2237889999999999999999999999999999 6677788999999999999999999
Q ss_pred hhhhhhhhcc---CCCCC--ccceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCC
Q 021611 178 AEQFRIDVAQ---NPNDT--EESIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGR 250 (310)
Q Consensus 178 ~~~f~~Al~l---~P~d~--~~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~ 250 (310)
++.|++++++ .++++ ....+..++.. .+|++++|...+.++. .+... ...
T Consensus 86 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-----------~~~~~------------~~~ 142 (203)
T 3gw4_A 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL-----------VYAQQ------------ADD 142 (203)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------HHHHH------------TTC
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----------HHHHh------------ccc
Confidence 9999999998 44332 12233333333 6788888887776521 11110 011
Q ss_pred CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 251 ENEYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 251 ~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
......++..+|.++..+|++++|+.++++++++
T Consensus 143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1112334567999999999999999999999984
No 154
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.13 E-value=1.4e-11 Score=104.61 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=55.3
Q ss_pred eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhh----------hhhhhhhhhhccCCCCCcc
Q 021611 135 FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFE----------EGAEQFRIDVAQNPNDTEE 194 (310)
Q Consensus 135 ~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~----------eA~~~f~~Al~l~P~d~~~ 194 (310)
-+.+.|++|++.|+++++++|+++.+|+++|.++..+|+++ +|+..|++|++++|+++.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A 82 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHH
Confidence 45688999999999999999999999999999999999865 9999999999999998764
No 155
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.13 E-value=2.2e-11 Score=114.13 Aligned_cols=160 Identities=11% Similarity=0.064 Sum_probs=114.8
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccC------cchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc-----
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELD------PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE----- 193 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~------P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~----- 193 (310)
-.|+.+|..++..|++++|+..|++|+++- |....+++++|.++..+|++++|++.+++++++.++...
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 467889999999999999999999998873 345678889999999999999999999999987654322
Q ss_pred cceeeeehh--hhhcChHHHHHhHHHhcC-----CChhh----HHHHHHhhcCCCChHHHHHHhcCC-------CCcchh
Q 021611 194 ESIWCFLCE--AQLYGVDEARNRFLEVGR-----DPRPV----MREAYNMFKGGGDPEKLVAAFSSG-------RENEYF 255 (310)
Q Consensus 194 ~~~~~~l~~--a~l~~~~eA~~~l~~~~~-----d~~~~----~~~a~~l~~~~~~~e~al~~~~~~-------~~~d~~ 255 (310)
+..+..++. ..+|++++|...+.++.. ..... +......+...|++++|+..+... ..+...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 122333333 367889999888766322 11111 112222344467888877666421 334446
Q ss_pred HhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 256 YASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 256 ~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
.+++.+|.++..+|++++|+.++++++++
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67788999999999999999999999984
No 156
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.13 E-value=5.5e-12 Score=98.96 Aligned_cols=93 Identities=20% Similarity=0.158 Sum_probs=67.7
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchh---hHHHhhccchhhhhhhhhhhhhhhhhhccCCCC---Cccceee
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK---AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND---TEESIWC 198 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~---~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d---~~~~~~~ 198 (310)
.+++.+|.+++..|++++|+..|+++++.+|+++ .+++.+|.+++..|++++|++.|+++++.+|++ +.++.+.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3567777788888888888888888888887776 677778888888888888888888888888777 4434444
Q ss_pred eehhhhhcChHHHHHhHHH
Q 021611 199 FLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 199 ~l~~a~l~~~~eA~~~l~~ 217 (310)
+.+...+|++++|+..+.+
T Consensus 83 a~~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 4444467777777777665
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.12 E-value=6.7e-12 Score=95.46 Aligned_cols=89 Identities=17% Similarity=0.257 Sum_probs=84.8
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFR 182 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~ 182 (310)
...++...+.+++. .+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|++.|+
T Consensus 19 ~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 19 NIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYE 96 (118)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 56778899999998 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCc
Q 021611 183 IDVAQNPNDTE 193 (310)
Q Consensus 183 ~Al~l~P~d~~ 193 (310)
++++++|+++.
T Consensus 97 ~~~~~~~~~~~ 107 (118)
T 1elw_A 97 EGLKHEANNPQ 107 (118)
T ss_dssp HHHTTCTTCHH
T ss_pred HHHHcCCCCHH
Confidence 99999998865
No 158
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=2e-12 Score=130.13 Aligned_cols=162 Identities=13% Similarity=0.039 Sum_probs=120.6
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheecc--ccccchhhhhhccccCcchhhHHHhhccchhhhh-hhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG--DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD-RFEEGAE 179 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g--~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg-~~~eA~~ 179 (310)
...++...+++++. .+|+++.+|++||.++...| ++++|++.+++++++||++..+|.+||.++..+| +++++++
T Consensus 88 ~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 88 LVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHH
Confidence 36678899999998 99999999999999999999 5599999999999999999999999999999999 9999999
Q ss_pred hhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchh
Q 021611 180 QFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYF 255 (310)
Q Consensus 180 ~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~ 255 (310)
.++++++.+|++..+ |.+++.. .+++..++ ..... . ..+.++++++.+.. ..+|+..
T Consensus 166 ~~~~~I~~~p~n~sa--W~~r~~ll~~l~~~~~~-------~~~~~-~---------~~~~~~eel~~~~~ai~~~P~~~ 226 (567)
T 1dce_A 166 FTDSLITRNFSNYSS--WHYRSCLLPQLHPQPDS-------GPQGR-L---------PENVLLKELELVQNAFFTDPNDQ 226 (567)
T ss_dssp HHHTTTTTTCCCHHH--HHHHHHHHHHHSCCCCS-------SSCCS-S---------CHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HHHHHHHHCCCCccH--HHHHHHHHHhhcccccc-------ccccc-c---------cHHHHHHHHHHHHHHHhhCCCCc
Confidence 999999999999874 5544333 32211000 00000 0 00112222222211 1235566
Q ss_pred Hhhhhhhhhhhhccchhh------------HHHHHHHhhcCC
Q 021611 256 YASLYAGLFYESQKKADA------------AKLHILAACESP 285 (310)
Q Consensus 256 ~a~~~lG~~~~~~G~~d~------------A~~~~~kAl~~~ 285 (310)
.+|+|++.++...|++++ |+..|+++++++
T Consensus 227 saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~ 268 (567)
T 1dce_A 227 SAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVG 268 (567)
T ss_dssp HHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTT
T ss_pred cHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecc
Confidence 788899999988888777 777889998754
No 159
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.12 E-value=6.7e-12 Score=92.42 Aligned_cols=76 Identities=24% Similarity=0.429 Sum_probs=70.2
Q ss_pred Cch-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611 119 NNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE 194 (310)
Q Consensus 119 ~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~ 194 (310)
++| +++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|++.|+++++++|+++.+
T Consensus 3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 79 (91)
T 1na3_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHH
Confidence 344 6789999999999999999999999999999999999999999999999999999999999999999988763
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.12 E-value=9.8e-12 Score=97.58 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=70.6
Q ss_pred eccccccchhhhhhcccc---CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHH
Q 021611 136 RQGDVVGSVAEFDKAIEL---DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR 212 (310)
Q Consensus 136 ~~g~~~eAl~~f~kAl~l---~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~ 212 (310)
.+|++++|+..|++++++ +|+++.+++++|.++..+|+|++|++.|+++++++|+++..+...+.+...+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 479999999999999999 69999999999999999999999999999999999999886665656666899999999
Q ss_pred HhHHH
Q 021611 213 NRFLE 217 (310)
Q Consensus 213 ~~l~~ 217 (310)
..+.+
T Consensus 82 ~~~~~ 86 (117)
T 3k9i_A 82 ELLLK 86 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.12 E-value=8.7e-12 Score=94.16 Aligned_cols=88 Identities=10% Similarity=0.077 Sum_probs=83.7
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcc--hhhHHHhhccchhhh-hhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR--QKAYLWQRGLSLYYL-DRFEEGAE 179 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~--~~~a~~~~G~a~~~l-g~~~eA~~ 179 (310)
...+|...+.+++. ++|+++.+|+.+|.++..+|++++|+..|+++++++|+ +..+++.+|.++..+ |++++|++
T Consensus 21 ~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 98 (112)
T 2kck_A 21 NYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEI 98 (112)
T ss_dssp CHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHH
T ss_pred hHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 56678899999998 89999999999999999999999999999999999999 999999999999999 99999999
Q ss_pred hhhhhhccCCCCC
Q 021611 180 QFRIDVAQNPNDT 192 (310)
Q Consensus 180 ~f~~Al~l~P~d~ 192 (310)
.|+++++..|+++
T Consensus 99 ~~~~~~~~~p~~~ 111 (112)
T 2kck_A 99 AEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHGGGCCCCC
T ss_pred HHHHHhhcccCCC
Confidence 9999999999764
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.11 E-value=1.2e-10 Score=110.75 Aligned_cols=189 Identities=13% Similarity=0.017 Sum_probs=135.2
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheec-c-ccccchhhhhhccccCcchhhHHHhhccchhhhhhhh------
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ-G-DVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFE------ 175 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~-g-~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~------ 175 (310)
..++...++.++. .+|+++.+|.+|+.++... + +++++++.++++++++|++..+|..|+.++..+|+++
T Consensus 105 l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhh
Confidence 4568888899998 9999999999999999998 8 9999999999999999999999999999999999999
Q ss_pred --hhhhhhhhhhccCCCCCccceeeeehhhhhcC-------hHHHHHhHHH---hcCCChhhHHHHHHhhcCCCC-----
Q 021611 176 --EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG-------VDEARNRFLE---VGRDPRPVMREAYNMFKGGGD----- 238 (310)
Q Consensus 176 --eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~-------~~eA~~~l~~---~~~d~~~~~~~a~~l~~~~~~----- 238 (310)
++++.++++++++|.+..++.++......+++ ++++++.+.+ ..++....+.-...++...+.
T Consensus 183 ~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 183 WGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc
Confidence 99999999999999998754444333445554 5777777655 344433333222122222222
Q ss_pred ---------------hHHHHHHhcCC--------CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHH
Q 021611 239 ---------------PEKLVAAFSSG--------RENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMA 295 (310)
Q Consensus 239 ---------------~e~al~~~~~~--------~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~ 295 (310)
.++....+... .+....++.-+++.+|..+|+.++|...|+...+ .+.+-.-+||-
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~~yw~ 341 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRAGYWE 341 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHHHHHH
Confidence 22333333211 1134566777899999999999999999999875 23222236654
No 163
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=3.1e-11 Score=110.59 Aligned_cols=156 Identities=13% Similarity=0.046 Sum_probs=101.9
Q ss_pred cccchhhhhhhhcCCCCch------hHHHHHHHhhhhheeccccccchhhhhhccccCcc------hhhHHHhhccchhh
Q 021611 103 FIPSVSGIWDALTGGNNNS------REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR------QKAYLWQRGLSLYY 170 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P------~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~------~~~a~~~~G~a~~~ 170 (310)
.+.+|...|.+++. +.+ ..+.++.++|.++..+|++++|+..|++|+++.+. ...++.++|.++..
T Consensus 51 ~~~~A~~~~~~al~--~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 51 QLEQAKDAYLQEAE--AHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp CHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 45566666666654 332 34578888888888888888888888888888532 24677788888888
Q ss_pred hhhhhhhhhhhhhhhccCCCCCc----cceeeeehh--hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHH
Q 021611 171 LDRFEEGAEQFRIDVAQNPNDTE----ESIWCFLCE--AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVA 244 (310)
Q Consensus 171 lg~~~eA~~~f~~Al~l~P~d~~----~~~~~~l~~--a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~ 244 (310)
|++++|++.|++++++.|+... ...+..++. .++|++++|+..+.++.. +...
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~~~--------- 187 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS-----------MYKE--------- 187 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHH---------
T ss_pred -CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HHHH---------
Confidence 8888888888888888765321 112222222 255666666666554211 0000
Q ss_pred HhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611 245 AFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESP 285 (310)
Q Consensus 245 ~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~ 285 (310)
.........+++.+|.++..+|++++|+.+|++++ +.
T Consensus 188 ---~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 188 ---MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred ---cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC
Confidence 00111123355668889999999999999999999 54
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.10 E-value=6.8e-12 Score=98.43 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=83.5
Q ss_pred hcccchhhhhhhhcCCCCchhHH---HHHHHhhhhheeccccccchhhhhhccccCcch---hhHHHhhccchhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREA---VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ---KAYLWQRGLSLYYLDRFE 175 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~---~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~---~~a~~~~G~a~~~lg~~~ 175 (310)
+.+.+|...+.+++. .+|+++ .+++.+|.++..+|++++|+..|+++++++|++ +.+++.+|.++..+|+++
T Consensus 16 ~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~ 93 (129)
T 2xev_A 16 GKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNT 93 (129)
T ss_dssp TCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHH
Confidence 356778899999887 788877 899999999999999999999999999999999 888999999999999999
Q ss_pred hhhhhhhhhhccCCCCCc
Q 021611 176 EGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 176 eA~~~f~~Al~l~P~d~~ 193 (310)
+|++.|+++++..|+++.
T Consensus 94 ~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 94 EAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHHHHCCCChH
Confidence 999999999999998764
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.10 E-value=1.4e-11 Score=98.11 Aligned_cols=140 Identities=13% Similarity=0.057 Sum_probs=104.1
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchh------hHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc--
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK------AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE-- 193 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~------~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~-- 193 (310)
..+.++..+|.++...|++++|+..|++++++.|... .++.++|.++...|++++|++.|++++++.++...
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 4568999999999999999999999999999987654 48889999999999999999999999997654321
Q ss_pred --cceeeeehh--hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhcc
Q 021611 194 --ESIWCFLCE--AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQK 269 (310)
Q Consensus 194 --~~~~~~l~~--a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G 269 (310)
...+..++. ...|++++|...+.++ ..+... ....+....++..+|.++..+|
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-----------~~~~~~------------~~~~~~~~~~~~~la~~~~~~g 143 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKH-----------LAIAQE------------LKDRIGEGRACWSLGNAYTALG 143 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHH------------TTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----------HHHHHH------------ccchHhHHHHHHHHHHHHHHcc
Confidence 112222332 2567777777666542 111110 1111223456677999999999
Q ss_pred chhhHHHHHHHhhcC
Q 021611 270 KADAAKLHILAACES 284 (310)
Q Consensus 270 ~~d~A~~~~~kAl~~ 284 (310)
++++|+.++++++++
T Consensus 144 ~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 144 NHDQAMHFAEKHLEI 158 (164)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999983
No 166
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.09 E-value=7.5e-11 Score=114.54 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=29.9
Q ss_pred HHHHHHHhhhhhee----ccccccchhhhhhccccCcchhhHHHhhccchhh----hhhhhhhhhhhhhhhcc
Q 021611 123 EAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY----LDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 123 ~~~a~~~rG~~~~~----~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~----lg~~~eA~~~f~~Al~l 187 (310)
++.+++.+|.+|.. .+++++|+..|.++++.. ++.+++.+|.++.. .+++++|++.|+++++.
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 34455555555544 455555555555544432 23444444444443 44455555555554443
No 167
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.07 E-value=1.5e-10 Score=112.36 Aligned_cols=186 Identities=13% Similarity=0.033 Sum_probs=103.3
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhhee----ccccccchhhhhhccccCcchhhHHHhhccchhh----hhhhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY----LDRFE 175 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~----~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~----lg~~~ 175 (310)
...|...|.++.. ++++.+++.+|.+|.. .+++++|++.|+++++. +++.+++++|.++.. .++++
T Consensus 131 ~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 131 KAESVKWFRLAAE----QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHH
Confidence 3445555555543 3467777788887776 67788888888887775 456777788877777 77888
Q ss_pred hhhhhhhhhhccCCCCCccceeeeehhh--h----hcChHHHHHhHHHhcC-CChhhHHHHHHhhcC----CCChHHHHH
Q 021611 176 EGAEQFRIDVAQNPNDTEESIWCFLCEA--Q----LYGVDEARNRFLEVGR-DPRPVMREAYNMFKG----GGDPEKLVA 244 (310)
Q Consensus 176 eA~~~f~~Al~l~P~d~~~~~~~~l~~a--~----l~~~~eA~~~l~~~~~-d~~~~~~~a~~l~~~----~~~~e~al~ 244 (310)
+|++.|+++++.++ +.+ +..++.. . .+++++|+..+.++.. ........+..++.. .+++++++.
T Consensus 205 ~A~~~~~~a~~~~~--~~a--~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 205 ISAQWYRKSATSGD--ELG--QLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHHHHHHTTC--HHH--HHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHHHHHHCCC--HHH--HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 88888888776543 332 2222222 1 3556777776665432 222221111111111 345555555
Q ss_pred HhcCCCCcchhHhhhhhhhhhhhc-----cchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhc
Q 021611 245 AFSSGRENEYFYASLYAGLFYESQ-----KKADAAKLHILAACESPYGQRSDDYMAALAKVHSL 303 (310)
Q Consensus 245 ~~~~~~~~d~~~a~~~lG~~~~~~-----G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~ 303 (310)
.+..........+.+.+|.+|... +++++|+.+|+++++. ...+.+.+||.++..
T Consensus 281 ~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 281 WYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFR 340 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHh
Confidence 554322222334455556555554 5566666666665552 133445555555443
No 168
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.06 E-value=1.7e-11 Score=116.74 Aligned_cols=110 Identities=12% Similarity=0.151 Sum_probs=89.4
Q ss_pred cccchhhhhhhhcCC--------------CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccch
Q 021611 103 FIPSVSGIWDALTGG--------------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSL 168 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~--------------~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~ 168 (310)
.+.+|...|.+++.. +++|.++.+|+++|.++..+|++++|+++|++|++++|+++.+++.+|.++
T Consensus 238 ~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 317 (370)
T 1ihg_A 238 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW 317 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 455677777777641 168889999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHH
Q 021611 169 YYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR 212 (310)
Q Consensus 169 ~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~ 212 (310)
..+|++++|+++|+++++++|++.........+...+++.+++.
T Consensus 318 ~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 318 QGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998763322222222444444443
No 169
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.05 E-value=1.1e-11 Score=95.05 Aligned_cols=90 Identities=20% Similarity=0.318 Sum_probs=84.8
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
+...+|...+.+++. .+|+++.+++.+|.++...|++++|+..|+++++++|++..+++.+|.++...|++++|+..|
T Consensus 23 ~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 100 (125)
T 1na0_A 23 GDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 100 (125)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 356678899999988 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCc
Q 021611 182 RIDVAQNPNDTE 193 (310)
Q Consensus 182 ~~Al~l~P~d~~ 193 (310)
+++++++|+++.
T Consensus 101 ~~~~~~~~~~~~ 112 (125)
T 1na0_A 101 QKALELDPNNAE 112 (125)
T ss_dssp HHHHHHCTTCHH
T ss_pred HHHHHhCCCcHH
Confidence 999999998875
No 170
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.05 E-value=1.3e-10 Score=105.26 Aligned_cols=167 Identities=5% Similarity=-0.065 Sum_probs=119.4
Q ss_pred CchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh------hHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK------AYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~------~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~ 192 (310)
.+|.....+...+..++..|++++|++.+.++++..|... ..++.+|.++...|++++|++.|++++++.++..
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 149 (293)
T 2qfc_A 70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Confidence 4567778889999999999999999999999999877532 4467799999999999999999999998876543
Q ss_pred c----cceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcc-hhHhhhhhhhhh
Q 021611 193 E----ESIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENE-YFYASLYAGLFY 265 (310)
Q Consensus 193 ~----~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d-~~~a~~~lG~~~ 265 (310)
. ..++..++.. ..|++++|+..+.++. ..... ....+. ...+++++|.+|
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal-----------~~~~~------------~~~~~~~~~~~~~nlg~~y 206 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQIL-----------KQLEA------------LHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHHHH------------SCCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HHHHh------------cCccccchHHHHHhHHHHH
Confidence 2 1133333333 5677777777766521 01110 001111 124667899999
Q ss_pred hhccchhhHHHHHHHhhcCCCCC----CChHHHHHHHHHhhcccCCc
Q 021611 266 ESQKKADAAKLHILAACESPYGQ----RSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 266 ~~~G~~d~A~~~~~kAl~~~~~~----~s~~~~~~la~~~~~~~~~~ 308 (310)
..+|++++|+.+|++|+++.... .-...+.++|.++..+|++.
T Consensus 207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 253 (293)
T 2qfc_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEE 253 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999742110 11466788999999998863
No 171
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.04 E-value=2.8e-10 Score=111.62 Aligned_cols=177 Identities=7% Similarity=-0.114 Sum_probs=133.3
Q ss_pred chhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh-hHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-AYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
+|..+|.+++. .++|+++.+|+.+|.++...|++++|.+.|+++++++|+++ .+|.+.|.++.+.|++++|++.|++|
T Consensus 304 ~A~~~~~~Al~-~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 304 EAANIYERAIS-TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHTT-TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 67888888884 16899999999999999999999999999999999999885 69999999999999999999999999
Q ss_pred hccCCCCCccceeeeehh-hhhcChHHHHHhHHHh---cCCChhhHHHHHHhhcCCCChHHHHHHhcCC-----CCcc-h
Q 021611 185 VAQNPNDTEESIWCFLCE-AQLYGVDEARNRFLEV---GRDPRPVMREAYNMFKGGGDPEKLVAAFSSG-----RENE-Y 254 (310)
Q Consensus 185 l~l~P~d~~~~~~~~l~~-a~l~~~~eA~~~l~~~---~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~-----~~~d-~ 254 (310)
++..|.+...+.+..+.. ...|+.++|+..+.++ .|+....+.....++...|+.++|...+... .+++ .
T Consensus 383 l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 383 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 999887654322222111 2478899999988763 3443344433344556678888887776521 1222 1
Q ss_pred hHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 255 FYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 255 ~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
...+..........|+.+.+..+++++++
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222334456678999999999999998
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.04 E-value=4e-11 Score=113.26 Aligned_cols=187 Identities=11% Similarity=0.019 Sum_probs=133.1
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccc--cccchhhhhhccccCcchhhHHHhhccchhhhhh-hhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD--VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDR-FEEGAE 179 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~--~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~-~~eA~~ 179 (310)
...++..+++.++. .+|+++.+|.+|+.++..+|+ ++++++.++++++++|.+..+|.+||.+....|+ ++++++
T Consensus 89 ~l~~EL~~~~~~L~--~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 89 LVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 34568888899998 999999999999999999995 7899999999999999999999999999999999 599999
Q ss_pred hhhhhhccCCCCCccceeeeehhh--hh--------------cChHHHHHhHHH---hcCCChhhHH-HHHHhhcCCC--
Q 021611 180 QFRIDVAQNPNDTEESIWCFLCEA--QL--------------YGVDEARNRFLE---VGRDPRPVMR-EAYNMFKGGG-- 237 (310)
Q Consensus 180 ~f~~Al~l~P~d~~~~~~~~l~~a--~l--------------~~~~eA~~~l~~---~~~d~~~~~~-~a~~l~~~~~-- 237 (310)
.++++++.+|.|..+ |.+++.. .+ +.++++++.+.+ ..|+....+. ....+....|
T Consensus 167 ~~~~~I~~~p~N~SA--W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 167 FTDSLITRNFSNYSS--WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHCSCCHHH--HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHHCCCCHHH--HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 999999999999874 5554433 44 346777777765 3444333332 2222333322
Q ss_pred --------ChHHHHHHhcC--CCCcchhHhhhhhhhhh-----hhccchhhHHHHHHHhhcCCCCCCChHHHHHH
Q 021611 238 --------DPEKLVAAFSS--GRENEYFYASLYAGLFY-----ESQKKADAAKLHILAACESPYGQRSDDYMAAL 297 (310)
Q Consensus 238 --------~~e~al~~~~~--~~~~d~~~a~~~lG~~~-----~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~l 297 (310)
..++++..+.. ...|+. .+.+++.+. ...|..++...++.+.+++..-. -.++-.|
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r--~~~y~d~ 315 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR--AAYLDDL 315 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG--HHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc--chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch--hhHHHHH
Confidence 23445555432 123343 333444422 24678889999999999965432 2555554
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.03 E-value=5.2e-11 Score=113.34 Aligned_cols=96 Identities=11% Similarity=0.110 Sum_probs=86.5
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccc----------------cCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIE----------------LDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV 185 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~----------------l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al 185 (310)
+.+..|..+|..++..|++++|+..|++|++ ++|.+..+++++|.+++.+|+|++|++++++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4568899999999999999999999999999 889999999999999999999999999999999
Q ss_pred ccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611 186 AQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 186 ~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~ 217 (310)
+++|+++.++..++.+...+|++++|+..+.+
T Consensus 301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999887655555556688899999888775
No 174
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.03 E-value=1.4e-10 Score=105.01 Aligned_cols=157 Identities=6% Similarity=-0.151 Sum_probs=112.7
Q ss_pred cccchhhhhhhhcCCCCch------hHHHHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhh
Q 021611 103 FIPSVSGIWDALTGGNNNS------REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYY 170 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P------~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~ 170 (310)
...++...+.+++. ..| .....++.+|.++...|++++|+..|++++++.+.. ..+++++|.++..
T Consensus 90 ~y~~A~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 2qfc_A 90 RYKEIYNKVWNELK--KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp CHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc--cccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 45567777776654 222 233567789999999999999999999999876543 4588999999999
Q ss_pred hhhhhhhhhhhhhhh---ccCCCCCcc--ceeeeehh--hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHH
Q 021611 171 LDRFEEGAEQFRIDV---AQNPNDTEE--SIWCFLCE--AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLV 243 (310)
Q Consensus 171 lg~~~eA~~~f~~Al---~l~P~d~~~--~~~~~l~~--a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al 243 (310)
+|+|++|++.|++++ +..|++... .++.+++. ..+|++++|+..+.++.. +..
T Consensus 168 ~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~-----------~~~--------- 227 (293)
T 2qfc_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE-----------ISC--------- 227 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHH---------
T ss_pred cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH-----------HHH---------
Confidence 999999999999999 456654321 13333333 367888888887775211 000
Q ss_pred HHhcCCCCcchhHhhhhhhhhhhhccchhhH-HHHHHHhhcC
Q 021611 244 AAFSSGRENEYFYASLYAGLFYESQKKADAA-KLHILAACES 284 (310)
Q Consensus 244 ~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A-~~~~~kAl~~ 284 (310)
..........+++.+|.+|..+|++++| ..+|++|+.+
T Consensus 228 ---~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 228 ---RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp ---HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ---hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 0111122345677899999999999999 8889999974
No 175
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.01 E-value=9.3e-11 Score=106.28 Aligned_cols=159 Identities=7% Similarity=-0.148 Sum_probs=105.5
Q ss_pred cccchhhhhhhhcCC-CCchhH---HHHHHHhhhhheeccccccchhhhhhccccCcchh------hHHHhhccchhhhh
Q 021611 103 FIPSVSGIWDALTGG-NNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK------AYLWQRGLSLYYLD 172 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~-~~~P~~---~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~------~a~~~~G~a~~~lg 172 (310)
...++..++.+++.. ..+|+. ...+..+|.++...|++++|+..|++|+++.+... .++.++|.++..+|
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence 456677888877652 123332 22344588899889999999999999998755432 26888999999999
Q ss_pred hhhhhhhhhhhhhccCC---CCCc--cceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHH
Q 021611 173 RFEEGAEQFRIDVAQNP---NDTE--ESIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAA 245 (310)
Q Consensus 173 ~~~eA~~~f~~Al~l~P---~d~~--~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~ 245 (310)
+|++|++.|+++++.-. .+.. +.++.+++.. .+|++++|+..+.++.. +..
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~-----------~~~----------- 227 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE-----------ISC----------- 227 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHH-----------
T ss_pred CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------HHH-----------
Confidence 99999999999985321 1211 1123333333 56777777766654210 000
Q ss_pred hcCCCCcchhHhhhhhhhhhhhccc-hhhHHHHHHHhhcC
Q 021611 246 FSSGRENEYFYASLYAGLFYESQKK-ADAAKLHILAACES 284 (310)
Q Consensus 246 ~~~~~~~d~~~a~~~lG~~~~~~G~-~d~A~~~~~kAl~~ 284 (310)
..........+++.+|.++..+|+ +++|+.+|++|+++
T Consensus 228 -~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 228 -RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp -HTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -HcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 011122235577789999999995 69999999999984
No 176
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.00 E-value=4e-11 Score=90.42 Aligned_cols=83 Identities=14% Similarity=0.248 Sum_probs=71.2
Q ss_pred HHHhhhhheeccccccchhhhhhccccCcchhh-HHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhh
Q 021611 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA-YLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL 205 (310)
Q Consensus 127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~-a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l 205 (310)
.+.+|.+++..|++++|+..|+++++++|+++. +++++|.++..+|++++|++.|+++++++|+++.++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 367899999999999999999999999999999 99999999999999999999999999999998874322
Q ss_pred cChHHHHHhHHH
Q 021611 206 YGVDEARNRFLE 217 (310)
Q Consensus 206 ~~~~eA~~~l~~ 217 (310)
+.+.+++..+.+
T Consensus 75 ~~~~~a~~~~~~ 86 (99)
T 2kc7_A 75 KMVMDILNFYNK 86 (99)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH
Confidence 334555555544
No 177
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.00 E-value=8.9e-10 Score=95.73 Aligned_cols=156 Identities=9% Similarity=0.009 Sum_probs=115.4
Q ss_pred ccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhc----ChHHHHHhHH
Q 021611 141 VGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY----GVDEARNRFL 216 (310)
Q Consensus 141 ~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~----~~~eA~~~l~ 216 (310)
.+|+..|.++.+. +++.+++++|.++...+++++|++.|+++++.+ ++.+....+..... + ++++|+..+.
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 4799999999986 678999999999999999999999999998864 45543333322234 5 7999999998
Q ss_pred Hhc-CCChhhHHHHHHhhcC----CCChHHHHHHhcCCCCcch----hHhhhhhhhhhhh----ccchhhHHHHHHHhhc
Q 021611 217 EVG-RDPRPVMREAYNMFKG----GGDPEKLVAAFSSGRENEY----FYASLYAGLFYES----QKKADAAKLHILAACE 283 (310)
Q Consensus 217 ~~~-~d~~~~~~~a~~l~~~----~~~~e~al~~~~~~~~~d~----~~a~~~lG~~~~~----~G~~d~A~~~~~kAl~ 283 (310)
++. +.....+..+..++.. .+++++++..+........ ..+++.+|.+|.. .+++++|+.+|++|++
T Consensus 78 ~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 78 KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 853 3333333333333332 5678888888864333223 7788999999998 8899999999999999
Q ss_pred CCCCCCChHHHHHHHHHhhcc
Q 021611 284 SPYGQRSDDYMAALAKVHSLC 304 (310)
Q Consensus 284 ~~~~~~s~~~~~~la~~~~~~ 304 (310)
. . .+...+.+||.++...
T Consensus 158 ~-~--~~~~a~~~Lg~~y~~g 175 (212)
T 3rjv_A 158 L-S--RTGYAEYWAGMMFQQG 175 (212)
T ss_dssp T-S--CTTHHHHHHHHHHHHC
T ss_pred c-C--CCHHHHHHHHHHHHcC
Confidence 5 1 2447788999988653
No 178
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.97 E-value=7e-10 Score=107.68 Aligned_cols=173 Identities=14% Similarity=0.088 Sum_probs=130.1
Q ss_pred chhHHHHHHHhhhhheeccccccchhh----hhhccccCcchhhHHHhhccchhhhh---hhhhhhhhhhhhhccCCCCC
Q 021611 120 NSREAVVAIRRGMLLFRQGDVVGSVAE----FDKAIELDPRQKAYLWQRGLSLYYLD---RFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 120 ~P~~~~a~~~rG~~~~~~g~~~eAl~~----f~kAl~l~P~~~~a~~~~G~a~~~lg---~~~eA~~~f~~Al~l~P~d~ 192 (310)
.++++.+++.+|.++...+.+++++.. +..+.+.+|. +++++|.++...| ++++|++.|+++.+.+|.++
T Consensus 137 ~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a 213 (452)
T 3e4b_A 137 AAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA 213 (452)
T ss_dssp HHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH
T ss_pred HCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH
Confidence 345678899999999999877777666 5555555665 9999999999999 99999999999999999665
Q ss_pred ccceeeeehhh--h----hcChHHHHHhHHHhcCCChhhHHHHHHh-h--cCCCChHHHHHHhcCCCCcchhHhhhhhhh
Q 021611 193 EESIWCFLCEA--Q----LYGVDEARNRFLEVGRDPRPVMREAYNM-F--KGGGDPEKLVAAFSSGRENEYFYASLYAGL 263 (310)
Q Consensus 193 ~~~~~~~l~~a--~----l~~~~eA~~~l~~~~~d~~~~~~~a~~l-~--~~~~~~e~al~~~~~~~~~d~~~a~~~lG~ 263 (310)
. .+..++.. . .+++++|+..+.++.++....+..+..+ + ...+++++++..+......+...+++.+|.
T Consensus 214 ~--~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~ 291 (452)
T 3e4b_A 214 Q--RVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGK 291 (452)
T ss_dssp H--HHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred H--HHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4 22333333 2 2578999999988664333333332222 3 457789999888875444556778899999
Q ss_pred hhhhcc-----chhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhc
Q 021611 264 FYESQK-----KADAAKLHILAACESPYGQRSDDYMAALAKVHSL 303 (310)
Q Consensus 264 ~~~~~G-----~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~ 303 (310)
+|. .| ++++|+.+|++|+ +.+.+.+.+||.++..
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRR 330 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHT
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHC
Confidence 998 66 9999999999999 2366889999988765
No 179
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.96 E-value=1.2e-10 Score=108.07 Aligned_cols=203 Identities=12% Similarity=0.058 Sum_probs=137.3
Q ss_pred cccchhhhhhhhcCCCCchh------HHHHHHHhhhhheeccccccchhhhhhccccC--------cchhhHHHhhccch
Q 021611 103 FIPSVSGIWDALTGGNNNSR------EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD--------PRQKAYLWQRGLSL 168 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~------~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~--------P~~~~a~~~~G~a~ 168 (310)
...++...+.+++. +.|. ...++.++|.++..+|++++|++.|++++++. |....++.++|.++
T Consensus 68 ~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 145 (373)
T 1hz4_A 68 ELTRSLALMQQTEQ--MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 145 (373)
T ss_dssp CHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--HHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence 45567777777765 3332 24567899999999999999999999999986 44566788899999
Q ss_pred hhhhhhhhhhhhhhhhhccCCCCCcc---ceeeeehh--hhhcChHHHHHhHHHhc---CC---ChhhHHH---H-HHhh
Q 021611 169 YYLDRFEEGAEQFRIDVAQNPNDTEE---SIWCFLCE--AQLYGVDEARNRFLEVG---RD---PRPVMRE---A-YNMF 233 (310)
Q Consensus 169 ~~lg~~~eA~~~f~~Al~l~P~d~~~---~~~~~l~~--a~l~~~~eA~~~l~~~~---~d---~~~~~~~---a-~~l~ 233 (310)
...|++++|+..+++++++.|..... ..+..++. ...|++++|...+.++. +. +...... . ...+
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 99999999999999999988764221 12223333 26789999998876632 21 1111111 1 1123
Q ss_pred cCCCChHHHHHHhcCCCC--cc----hhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCC----ChHHHHHHHHHhhc
Q 021611 234 KGGGDPEKLVAAFSSGRE--NE----YFYASLYAGLFYESQKKADAAKLHILAACESPYGQR----SDDYMAALAKVHSL 303 (310)
Q Consensus 234 ~~~~~~e~al~~~~~~~~--~d----~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~----s~~~~~~la~~~~~ 303 (310)
...|+++++...+..... +. ....+..+|.++..+|++++|...++++++...... ..+.+..++.++..
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 457888888777652211 11 112345688899999999999999999987421111 12355677888888
Q ss_pred ccCC
Q 021611 304 CRNW 307 (310)
Q Consensus 304 ~~~~ 307 (310)
.|++
T Consensus 306 ~g~~ 309 (373)
T 1hz4_A 306 AGRK 309 (373)
T ss_dssp HTCH
T ss_pred hCCH
Confidence 7764
No 180
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.95 E-value=2.5e-10 Score=104.57 Aligned_cols=159 Identities=11% Similarity=0.013 Sum_probs=107.8
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC--Cc--c
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND--TE--E 194 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d--~~--~ 194 (310)
..+...|.++..+|++++|++.|.+++++.+.. ..++.++|.++..+|++++|++.|++++++.++. +. +
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345555788999999999999999999997643 5688899999999999999999999999985432 11 1
Q ss_pred ceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchh
Q 021611 195 SIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKAD 272 (310)
Q Consensus 195 ~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d 272 (310)
..+..++.. . |++++|+..+.++ ..++... ........++..+|.++..+|+++
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~A-----------l~~~~~~------------~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQA-----------AAVFENE------------ERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHH-----------HHHHHHT------------TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHH-----------HHHHHhC------------CChhHHHHHHHHHHHHHHHcCCHH
Confidence 122222222 3 4555555554431 1111100 011112345667999999999999
Q ss_pred hHHHHHHHhhcCCCCCC----ChHHHHHHHHHhhcccCC
Q 021611 273 AAKLHILAACESPYGQR----SDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 273 ~A~~~~~kAl~~~~~~~----s~~~~~~la~~~~~~~~~ 307 (310)
+|+.+|++++++..... ...++.+++.+++.+|++
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 211 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH
Confidence 99999999998421111 123666788888888875
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.93 E-value=7.3e-11 Score=91.27 Aligned_cols=87 Identities=13% Similarity=0.179 Sum_probs=81.7
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch-------hhHHHhhccchhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-------KAYLWQRGLSLYYLDRF 174 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~-------~~a~~~~G~a~~~lg~~ 174 (310)
+....|...+.+++. .+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+++.+|.++..+|++
T Consensus 18 ~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 95 (131)
T 1elr_A 18 KDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKY 95 (131)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccH
Confidence 356678899999998 899999999999999999999999999999999999987 88999999999999999
Q ss_pred hhhhhhhhhhhccCCC
Q 021611 175 EEGAEQFRIDVAQNPN 190 (310)
Q Consensus 175 ~eA~~~f~~Al~l~P~ 190 (310)
++|++.|+++++++|+
T Consensus 96 ~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 96 KDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999984
No 182
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.93 E-value=3.4e-10 Score=104.91 Aligned_cols=203 Identities=10% Similarity=0.058 Sum_probs=134.7
Q ss_pred cccchhhhhhhhcCCCCchh-----HHHHHHHhhhhheeccccccchhhhhhccccCcchh------hHHHhhccchhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSR-----EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK------AYLWQRGLSLYYL 171 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~-----~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~------~a~~~~G~a~~~l 171 (310)
..+++...+.+++. ..|. ...++..+|.++...|++++|+..+++++++.|... .++.++|.++...
T Consensus 29 ~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 106 (373)
T 1hz4_A 29 NPDEAERLAKLALE--ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 106 (373)
T ss_dssp CHHHHHHHHHHHHH--TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH--cCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence 45567777777765 3332 234788999999999999999999999999987643 3367899999999
Q ss_pred hhhhhhhhhhhhhhccCCCC-----C-ccceeeeehh--hhhcChHHHHHhHHHh---cCCC--hh---hHHHHHHhhcC
Q 021611 172 DRFEEGAEQFRIDVAQNPND-----T-EESIWCFLCE--AQLYGVDEARNRFLEV---GRDP--RP---VMREAYNMFKG 235 (310)
Q Consensus 172 g~~~eA~~~f~~Al~l~P~d-----~-~~~~~~~l~~--a~l~~~~eA~~~l~~~---~~d~--~~---~~~~a~~l~~~ 235 (310)
|++++|++.|++++++.+.. + ....+..++. ...|++++|...+.+. .+.. .. .+......+..
T Consensus 107 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 186 (373)
T 1hz4_A 107 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 186 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999875321 1 1122333333 3689999999988763 2221 11 11122223445
Q ss_pred CCChHHHHHHhcC------CCC-cchhHhhh--hhhhhhhhccchhhHHHHHHHhhcCCCCCC--ChHHHHHHHHHhhcc
Q 021611 236 GGDPEKLVAAFSS------GRE-NEYFYASL--YAGLFYESQKKADAAKLHILAACESPYGQR--SDDYMAALAKVHSLC 304 (310)
Q Consensus 236 ~~~~e~al~~~~~------~~~-~d~~~a~~--~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~--s~~~~~~la~~~~~~ 304 (310)
.|+++++...+.. ... +....+.. .++.++..+|++++|..+++++++...+.. ....+..++.++...
T Consensus 187 ~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 266 (373)
T 1hz4_A 187 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 266 (373)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc
Confidence 6788887766531 111 11122221 234557899999999999999998442211 122346789999888
Q ss_pred cCC
Q 021611 305 RNW 307 (310)
Q Consensus 305 ~~~ 307 (310)
|++
T Consensus 267 g~~ 269 (373)
T 1hz4_A 267 GEF 269 (373)
T ss_dssp TCH
T ss_pred CCH
Confidence 876
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.92 E-value=7.3e-11 Score=89.79 Aligned_cols=81 Identities=9% Similarity=0.087 Sum_probs=76.0
Q ss_pred hcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhhhhhhh
Q 021611 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYYLDRFE 175 (310)
Q Consensus 102 ~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~lg~~~ 175 (310)
+.+.+|...|.+++. ++|+++.+|+++|.++..+|++++|++.|+++++++|++ ..+++.+|.++..+|+++
T Consensus 18 ~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 18 GLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQ 95 (111)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHh
Confidence 356789999999998 999999999999999999999999999999999999998 889999999999999999
Q ss_pred hhhhhhhhh
Q 021611 176 EGAEQFRID 184 (310)
Q Consensus 176 eA~~~f~~A 184 (310)
+|++.|++.
T Consensus 96 ~a~~~~~~~ 104 (111)
T 2l6j_A 96 IPVVEVDEL 104 (111)
T ss_dssp CCSSSSSSC
T ss_pred hhHhHHHHh
Confidence 999988764
No 184
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.87 E-value=5.7e-10 Score=85.98 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=69.0
Q ss_pred chhHHHHHHHhhhhheeccc---cccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611 120 NSREAVVAIRRGMLLFRQGD---VVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 120 ~P~~~~a~~~rG~~~~~~g~---~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~ 192 (310)
+|+++.++..+|.+++..++ .++|...+++|++++|+++.+++.+|.+++..|+|++|+..|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 68999999999999987666 79999999999999999999999999999999999999999999999999844
No 185
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.86 E-value=3.5e-09 Score=95.78 Aligned_cols=164 Identities=6% Similarity=-0.051 Sum_probs=116.1
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccccCcchhh------HHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA------YLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE 194 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~------a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~ 194 (310)
+.....+...+..++..|++++|+..++++++..|..+. .+..+|.++...|++++|++.|++++++.+.....
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH
Confidence 444556666788899999999999999999998775433 34458999999999999999999999976654431
Q ss_pred ----ceeeeehh--hhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhc
Q 021611 195 ----SIWCFLCE--AQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQ 268 (310)
Q Consensus 195 ----~~~~~l~~--a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~ 268 (310)
.++..++. ..+|++++|+..+.++.. .+.. . ....+....+++++|.+|..+
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~-----------~~~~----------~-~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILK-----------QLEA----------L-HDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHH----------S-SCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HHHh----------c-ccchhHHHHHHHHHHHHHHHH
Confidence 12333333 367778888777765211 1110 0 011223445677899999999
Q ss_pred cchhhHHHHHHHhhcCCC----CCCChHHHHHHHHHhhcccC
Q 021611 269 KKADAAKLHILAACESPY----GQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 269 G~~d~A~~~~~kAl~~~~----~~~s~~~~~~la~~~~~~~~ 306 (310)
|++++|+.++++|+++.. ...-...+.++|.++..+|+
T Consensus 210 ~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 210 SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999998421 11124677899999999984
No 186
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.83 E-value=4.2e-09 Score=114.31 Aligned_cols=161 Identities=10% Similarity=-0.034 Sum_probs=122.1
Q ss_pred hhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc
Q 021611 108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 108 ~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l 187 (310)
.+-|+++++.....+++.+|+++|.++...|++++|++.|.+| +++.+|...|.++.++|+|++|++.|..|.+.
T Consensus 1089 i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1089 IGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445555542234567999999999999999999999999887 78899999999999999999999999999998
Q ss_pred CCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhh
Q 021611 188 NPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYES 267 (310)
Q Consensus 188 ~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~ 267 (310)
+++ +....+.+.+.++++++++ .+.+.+. +.. +.+......+...|++++|...+... ..+..+|.++..
T Consensus 1164 ~~e-~~Idt~LafaYAKl~rlee-le~fI~~-~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1164 ARE-SYVETELIFALAKTNRLAE-LEEFING-PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVH 1233 (1630)
T ss_pred ccc-ccccHHHHHHHHhhcCHHH-HHHHHhC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHHHHHHHHH
Confidence 854 2222345556677888775 5555431 122 22223444556688999999998753 245569999999
Q ss_pred ccchhhHHHHHHHhhc
Q 021611 268 QKKADAAKLHILAACE 283 (310)
Q Consensus 268 ~G~~d~A~~~~~kAl~ 283 (310)
+|++++|++.+++|..
T Consensus 1234 Lge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKANS 1249 (1630)
T ss_pred hCCHHHHHHHHHHhCC
Confidence 9999999999999965
No 187
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.82 E-value=6.8e-10 Score=93.06 Aligned_cols=152 Identities=13% Similarity=0.057 Sum_probs=98.2
Q ss_pred heeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCC--C--ccceeeeehh--hhhcC
Q 021611 134 LFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPND--T--EESIWCFLCE--AQLYG 207 (310)
Q Consensus 134 ~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d--~--~~~~~~~l~~--a~l~~ 207 (310)
++..|++++|++.++......+....++..+|.++...|++++|+..|++++++.... . .+..+..++. ...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4678999999995555444333678999999999999999999999999999853221 1 1122333332 25677
Q ss_pred hHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCc-chhHhhhhhhhhhhhccchhhHHHHHHHhhcCCC
Q 021611 208 VDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGREN-EYFYASLYAGLFYESQKKADAAKLHILAACESPY 286 (310)
Q Consensus 208 ~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~-d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~ 286 (310)
+++|+..+.++ ..++.. ....+ ....++..+|.++..+|++++|+.++++++++..
T Consensus 82 ~~~A~~~~~~a-----------l~~~~~------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 82 WDAARRCFLEE-----------RELLAS------------LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHHHHHHHHHH-----------HHHHHH------------SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHH------------cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 77776666542 111110 11111 2345677899999999999999999999997421
Q ss_pred CCCC----hHHHHHHHHHhhcccCCc
Q 021611 287 GQRS----DDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 287 ~~~s----~~~~~~la~~~~~~~~~~ 308 (310)
...+ ...+.++|.++..+|+|.
T Consensus 139 ~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 139 QADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hccchHHHHHHHHHHHHHHHHCcCHH
Confidence 1111 123468899999999874
No 188
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.81 E-value=1.5e-09 Score=106.06 Aligned_cols=163 Identities=8% Similarity=-0.071 Sum_probs=54.8
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 203 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a 203 (310)
+.+|..+|.++...|++++|++.|.++ .++.++...|.+....|+|++|+..++.+.+..++ +....-...+.+
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~ 105 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence 579999999999999999999999774 56679999999999999999999999999985443 332222333455
Q ss_pred hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 204 QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 204 ~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
++|+++++.+.+.. ++.. .+..+...+...|.+++|...+... ..+..++.++..+|++++|++.+++|.
T Consensus 106 Klg~l~e~e~f~~~--pn~~-a~~~IGd~~~~~g~yeeA~~~Y~~a------~n~~~LA~~L~~Lg~yq~AVea~~KA~- 175 (449)
T 1b89_A 106 KTNRLAELEEFING--PNNA-HIQQVGDRCYDEKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAVDGARKAN- 175 (449)
T ss_dssp ---CHHHHTTTTTC--C-----------------CTTTHHHHHHHT------TCHHHHHHHHHTTTCHHHHHHHHHHHT-
T ss_pred HhCCHHHHHHHHcC--CcHH-HHHHHHHHHHHcCCHHHHHHHHHHh------hhHHHHHHHHHHhccHHHHHHHHHHcC-
Confidence 88999887766653 2111 2223333455577888998888743 134459999999999999999999992
Q ss_pred CCCCCCChHHHHHHHHHhhcccCCc
Q 021611 284 SPYGQRSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 284 ~~~~~~s~~~~~~la~~~~~~~~~~ 308 (310)
+...|..+..++...|+|.
T Consensus 176 ------~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 176 ------STRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp ------CHHHHHHHHHHHHHTTCHH
T ss_pred ------CchhHHHHHHHHHHcCcHH
Confidence 3567788888888888874
No 189
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.78 E-value=4.8e-10 Score=84.42 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=75.8
Q ss_pred hhcccchhhhhhhhcCCCCchhHHH-HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAV-VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAE 179 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~-a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~ 179 (310)
.+...+|...|.+++. .+|+++. +|+.+|.++..+|++++|++.|+++++++|++..++.+ +.+.+|+.
T Consensus 13 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~ 82 (99)
T 2kc7_A 13 QGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILN 82 (99)
T ss_dssp HTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHH
Confidence 3356779999999998 9999999 99999999999999999999999999999999988755 89999999
Q ss_pred hhhhhhccCCCCCc
Q 021611 180 QFRIDVAQNPNDTE 193 (310)
Q Consensus 180 ~f~~Al~l~P~d~~ 193 (310)
.|++++..+|+++.
T Consensus 83 ~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 83 FYNKDMYNQLEHHH 96 (99)
T ss_dssp HHCCTTHHHHCCSS
T ss_pred HHHHHhccCccccc
Confidence 99999999998764
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.78 E-value=1.7e-09 Score=83.90 Aligned_cols=78 Identities=9% Similarity=0.071 Sum_probs=68.8
Q ss_pred ccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 141 VGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 141 ~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
++|++.|+++++++|+++.+++++|.++...|++++|+..|+++++++|+++.++...+.+....|++++|+..+.++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999998775444444455789999999988763
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.69 E-value=6.1e-09 Score=79.67 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=36.4
Q ss_pred cCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 153 LDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 153 l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
.+|+++.+++++|.+++.+|++++|++.|+++++++|+++.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 42 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG 42 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 57999999999999999999999999999999999998765
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.1e-08 Score=96.19 Aligned_cols=185 Identities=8% Similarity=-0.017 Sum_probs=123.9
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcchh-----------------hHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK-----------------AYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~-----------------~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
|.+.+..|..+...|+|++|++.|.++++.+|+.. .++.++|.+|...|++++|++.+.++++
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44567788888889999999999999998887643 3577889999999999999999999888
Q ss_pred cCCCCCccc----eeeeehhh--hhcChHHHHHhHHHhc-------CCCh--hhHHHHHHhhcCCCChHHHHHHhc----
Q 021611 187 QNPNDTEES----IWCFLCEA--QLYGVDEARNRFLEVG-------RDPR--PVMREAYNMFKGGGDPEKLVAAFS---- 247 (310)
Q Consensus 187 l~P~d~~~~----~~~~l~~a--~l~~~~eA~~~l~~~~-------~d~~--~~~~~a~~l~~~~~~~e~al~~~~---- 247 (310)
+.+....+. ....++.. ..|++++|...+.+.. .... ........++...|++++|+..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 766543321 11111222 3466777777654421 1111 111223334555678877766553
Q ss_pred ----CCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCC-CC----hHHHHHHHHHhhcccCCc
Q 021611 248 ----SGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQ-RS----DDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 248 ----~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~-~s----~~~~~~la~~~~~~~~~~ 308 (310)
....+.....+..+|.+|..+|++++|...|++++.+.... .. ..++..++.+|...|+|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~ 233 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYK 233 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHH
Confidence 22344556677789999999999999999999998742111 11 244556788998888874
No 193
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.51 E-value=3.9e-08 Score=96.11 Aligned_cols=168 Identities=13% Similarity=0.098 Sum_probs=101.1
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh-
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA- 203 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a- 203 (310)
.+|...|..+...|+|++|+..|+++ ..|..+|.++.++|+|++|++.|+++ +++. .|...+.+
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~--~Wk~v~~aC 187 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTR--TWKEVCFAC 187 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCch--hHHHHHHHH
Confidence 58888888888888888888888877 47778888888888888888888888 2333 56665554
Q ss_pred -hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhh--hhccchhhHHHHH
Q 021611 204 -QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFY--ESQKKADAAKLHI 278 (310)
Q Consensus 204 -~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~--~~~G~~d~A~~~~ 278 (310)
..|+++.|..+...+...|.... .+..++...|..+++++.++.+ .++.....+.-+|.+| ...|++.++++.|
T Consensus 188 v~~~ef~lA~~~~l~L~~~ad~l~-~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 188 VDGKEFRLAQMCGLHIVVHADELE-ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHTTCHHHHHHTTTTTTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHhCHhhHH-HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 67788888777666554444332 3444566677888887777633 2322333333355544 5567777788877
Q ss_pred HHhhcCCCCC---CChHHHHHHHHHhhcccCCc
Q 021611 279 LAACESPYGQ---RSDDYMAALAKVHSLCRNWS 308 (310)
Q Consensus 279 ~kAl~~~~~~---~s~~~~~~la~~~~~~~~~~ 308 (310)
...+.++--. .....|..+..+|...+.|.
T Consensus 267 ~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 267 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 7776643200 23467778888887777763
No 194
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.50 E-value=4.1e-08 Score=91.75 Aligned_cols=172 Identities=8% Similarity=-0.123 Sum_probs=124.4
Q ss_pred hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCc--chhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP--RQKAYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P--~~~~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
+...+++.+. ..+.++.+++.+|.++...|++++|+..+.++|..+| ++..++...+.++..+||.+.|.+.+++.
T Consensus 85 a~~~l~~l~~--~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLK--DKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTT--TSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh--cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666776665 4445566778999999999999999999999999997 88999999999999999999999999999
Q ss_pred hccCCC-----CCccceeeeehhh----hhc--ChHHHHHhHHHhcCCChh--hHHHHHHhhcCCCChHHHHHHhcC--C
Q 021611 185 VAQNPN-----DTEESIWCFLCEA----QLY--GVDEARNRFLEVGRDPRP--VMREAYNMFKGGGDPEKLVAAFSS--G 249 (310)
Q Consensus 185 l~l~P~-----d~~~~~~~~l~~a----~l~--~~~eA~~~l~~~~~d~~~--~~~~a~~l~~~~~~~e~al~~~~~--~ 249 (310)
.+.+|+ |.. ...++.+ ..| ++.+|...+.++...... ....++......|++++|.+.+.. .
T Consensus 163 ~~~~~d~~~~~d~~---l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNAIEDTVSGDNEM---ILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHSCHHHHHHHHH---HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HhcCccccccchHH---HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999993 331 2222222 224 688998888886554321 111233345556888888777641 1
Q ss_pred C----------CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCC
Q 021611 250 R----------ENEYFYASLYAGLFYESQKKADAAKLHILAACESP 285 (310)
Q Consensus 250 ~----------~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~ 285 (310)
. +++...+..++..+...+|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 1 24455555566667777786 8899999999843
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.45 E-value=7.8e-09 Score=81.98 Aligned_cols=113 Identities=12% Similarity=0.027 Sum_probs=84.9
Q ss_pred cccchhhhhhhhcCCCCchh------HHHHHHHhhhhheeccccccchhhhhhccccCcch------hhHHHhhccchhh
Q 021611 103 FIPSVSGIWDALTGGNNNSR------EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ------KAYLWQRGLSLYY 170 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~------~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~------~~a~~~~G~a~~~ 170 (310)
...++...+.+++. +.|. ...++..+|.++..+|++++|+..|++++++.|.. ..++.++|.++..
T Consensus 24 ~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (164)
T 3ro3_A 24 NFRDAVIAHEQRLL--IAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 101 (164)
T ss_dssp CHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--HHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 45567777777765 4333 23699999999999999999999999999987653 6688899999999
Q ss_pred hhhhhhhhhhhhhhhccCCCCCc----cceeeeehh--hhhcChHHHHHhHHH
Q 021611 171 LDRFEEGAEQFRIDVAQNPNDTE----ESIWCFLCE--AQLYGVDEARNRFLE 217 (310)
Q Consensus 171 lg~~~eA~~~f~~Al~l~P~d~~----~~~~~~l~~--a~l~~~~eA~~~l~~ 217 (310)
.|++++|++.+++++++.+.... +..+..++. ...|++++|...+.+
T Consensus 102 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 102 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999987433211 112222332 256778888777665
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.42 E-value=1.9e-08 Score=73.50 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=63.2
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD 172 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg 172 (310)
...+|...+.+++. ++|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+|
T Consensus 24 ~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 24 DYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 56678899999998 899999999999999999999999999999999999999999999999887764
No 197
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.41 E-value=4.6e-07 Score=98.63 Aligned_cols=148 Identities=12% Similarity=0.030 Sum_probs=103.7
Q ss_pred eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhH
Q 021611 136 RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 215 (310)
Q Consensus 136 ~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l 215 (310)
..|++++|++.++++ +.+.+|+++|.++...|++++|++.|.+| +|+..+.....+..++|++++|++.+
T Consensus 1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556677777766655 55789999999999999999999999887 56654443333444899999999998
Q ss_pred HHhcC---CChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChH
Q 021611 216 LEVGR---DPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDD 292 (310)
Q Consensus 216 ~~~~~---d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~ 292 (310)
..+.. ++......++.+-+ .+++++....+. ..+ ...+...|.++...|++++|..+|.+| .
T Consensus 1158 ~mArk~~~e~~Idt~LafaYAK-l~rleele~fI~-~~n---~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ 1222 (1630)
T 1xi4_A 1158 QMARKKARESYVETELIFALAK-TNRLAELEEFIN-GPN---NAHIQQVGDRCYDEKMYDAAKLLYNNV----------S 1222 (1630)
T ss_pred HHHHhhcccccccHHHHHHHHh-hcCHHHHHHHHh-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHhh----------h
Confidence 76432 21111123443333 366776444432 222 234456999999999999999999996 3
Q ss_pred HHHHHHHHhhcccCCc
Q 021611 293 YMAALAKVHSLCRNWS 308 (310)
Q Consensus 293 ~~~~la~~~~~~~~~~ 308 (310)
.+..++..++.+|++.
T Consensus 1223 ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred HHHHHHHHHHHhCCHH
Confidence 5688899998888753
No 198
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.33 E-value=9e-08 Score=74.26 Aligned_cols=70 Identities=10% Similarity=0.086 Sum_probs=64.2
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccC-------cchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-------PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~-------P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
+...+.+|..++..|+|..|+.+|++|++.. +..+..+.++|.+++++|++++|+..++++++++|+++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 5678999999999999999999999999974 345778999999999999999999999999999999865
No 199
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=7.2e-08 Score=81.08 Aligned_cols=86 Identities=13% Similarity=0.236 Sum_probs=76.8
Q ss_pred chhhhhhhhcCCCCchhHHHHHHHhhhhheecc---ccccchhhhhhccccC-c-chhhHHHhhccchhhhhhhhhhhhh
Q 021611 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG---DVVGSVAEFDKAIELD-P-RQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 106 ~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g---~~~eAl~~f~kAl~l~-P-~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
.....|...+. .+|.+.++.++.|+++...+ +.++++..++.+++.+ | +..+++|++|.+++++|+|++|++.
T Consensus 16 ~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 35566666665 67788999999999999988 7779999999999999 8 5689999999999999999999999
Q ss_pred hhhhhccCCCCCc
Q 021611 181 FRIDVAQNPNDTE 193 (310)
Q Consensus 181 f~~Al~l~P~d~~ 193 (310)
++++++++|++..
T Consensus 94 ~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 94 VRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHCTTCHH
T ss_pred HHHHHhcCCCCHH
Confidence 9999999998865
No 200
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.26 E-value=7.3e-07 Score=91.55 Aligned_cols=198 Identities=8% Similarity=-0.006 Sum_probs=139.1
Q ss_pred hhhhhhhcCCCCchhHHHHHHHhhhhheeccccccch-hhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSV-AEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 108 ~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl-~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
...|.+++. ..|.++..|+..+..+...|+.++|. +.|++|+...|.....|...+......|++++|.+.|++++.
T Consensus 329 ~~~Ye~aL~--~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQ--HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHH--HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356778887 89999999999999999999999998 999999999999888888999999999999999999999997
Q ss_pred c-----------CCCC---------Cccceeeeehhh--hhcChHHHHHhHHHhcCC-C---hhhHH-HHHHhhcCCCCh
Q 021611 187 Q-----------NPND---------TEESIWCFLCEA--QLYGVDEARNRFLEVGRD-P---RPVMR-EAYNMFKGGGDP 239 (310)
Q Consensus 187 l-----------~P~d---------~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~d-~---~~~~~-~a~~l~~~~~~~ 239 (310)
. .|.+ ....+|...+.. +.++.+.|+..+.++... + ...+. .+..-+..+++.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 5 2421 112356655544 578899999988876433 2 12221 122223334556
Q ss_pred HHHHHHhcCCC--CcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCC-CCChHHHHHHHHHhhcccCC
Q 021611 240 EKLVAAFSSGR--ENEYFYASLYAGLFYESQKKADAAKLHILAACESPYG-QRSDDYMAALAKVHSLCRNW 307 (310)
Q Consensus 240 e~al~~~~~~~--~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~-~~s~~~~~~la~~~~~~~~~ 307 (310)
+.|.+.+..+. -++....+...+......|+.+.|+..|++|+..... ..+.+.+......+..+|+-
T Consensus 487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 76666554321 1222222222334556789999999999999994321 13345555668888888864
No 201
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.24 E-value=1.2e-06 Score=81.89 Aligned_cols=163 Identities=9% Similarity=0.021 Sum_probs=111.2
Q ss_pred chhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCC--CCCccceeeeehhhhhcChHHHHHhHHHhcC
Q 021611 143 SVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP--NDTEESIWCFLCEAQLYGVDEARNRFLEVGR 220 (310)
Q Consensus 143 Al~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P--~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~ 220 (310)
|+..|++.++..+....+++..|.++...|++++|++.+.+.+..+| ++.++.+.......++|+.++|.+.+.++..
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 89999999988766667778999999999999999999999999987 5566544444444578999999998865322
Q ss_pred -CC-------hhhH--HHHH-HhhcCCCChHHHHHHhcCC--CCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCC-
Q 021611 221 -DP-------RPVM--REAY-NMFKGGGDPEKLVAAFSSG--RENEYFYASLYAGLFYESQKKADAAKLHILAACESPY- 286 (310)
Q Consensus 221 -d~-------~~~~--~~a~-~l~~~~~~~e~al~~~~~~--~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~- 286 (310)
++ .... .+++ .+..++++++++...+... ..|+.......++ ++..+|++++|...+++.++..+
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhccc
Confidence 22 1111 2232 2445566788887776521 2222111122233 89999999999999998776310
Q ss_pred -------CCCChHHHHHHHHHhhcccC
Q 021611 287 -------GQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 287 -------~~~s~~~~~~la~~~~~~~~ 306 (310)
.+.+++.+.++..+-.-.|+
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 13467888787666555554
No 202
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=8.4e-07 Score=83.12 Aligned_cols=179 Identities=11% Similarity=0.017 Sum_probs=123.6
Q ss_pred cccchhhhhhhhcCCCCch-----------------hHHHHHHHhhhhheeccccccchhhhhhccccCcchhh------
Q 021611 103 FIPSVSGIWDALTGGNNNS-----------------REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA------ 159 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P-----------------~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~------ 159 (310)
.+.+|.+.|.+++. .+| ....++.++|.+|..+|++++|++.|.+++++.+....
T Consensus 19 ~y~eA~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 19 QYNEAEQVYLSLLD--KDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp CHHHHHHHHHHHHH--SCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHh--hCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 45567777777654 333 23357899999999999999999999999998776433
Q ss_pred HHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc----cceeeeehhh--hhcChHHHHHhHHHhcC-----CChhhH--
Q 021611 160 YLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE----ESIWCFLCEA--QLYGVDEARNRFLEVGR-----DPRPVM-- 226 (310)
Q Consensus 160 a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~----~~~~~~l~~a--~l~~~~eA~~~l~~~~~-----d~~~~~-- 226 (310)
....+|.++...|++++|++.+++++...+.... +..+..++.. ..|++++|...+.++.. +..+..
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 176 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD 176 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence 3456899999999999999999999886543321 1222334433 57899999998766321 222211
Q ss_pred --HHHHHhhcCCCChHHHHHHhcC-------CCCcc--hhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 227 --REAYNMFKGGGDPEKLVAAFSS-------GRENE--YFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 227 --~~a~~l~~~~~~~e~al~~~~~-------~~~~d--~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
.....++...+++++|...+.. ...+. ....+...|.++...|++++|..+|.++++
T Consensus 177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 177 VHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1222345557888887666531 11222 233455689999999999999999999987
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.05 E-value=3e-06 Score=83.76 Aligned_cols=134 Identities=10% Similarity=-0.055 Sum_probs=95.4
Q ss_pred HHhhhhheeccccccchhhhhhcccc--------CcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc-----CCCCCcc
Q 021611 128 IRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ-----NPNDTEE 194 (310)
Q Consensus 128 ~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l-----~P~d~~~ 194 (310)
+..+..+..+|+|++|+..+++++++ +|+-...+.++|.+|..+|+|++|+..+++++++ -|+++..
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34455677899999999999999987 3555778899999999999999999999999975 5666642
Q ss_pred -ceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCC-CCcchhHhhhhhhhhhhhccc
Q 021611 195 -SIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG-RENEYFYASLYAGLFYESQKK 270 (310)
Q Consensus 195 -~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~-~~~d~~~a~~~lG~~~~~~G~ 270 (310)
..+.+++.. .+|++++|...+.++.. .+. . ..+ ..|......-.++.++..+|+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~-----------i~~----------~-~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYA-----------ILL----------V-THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHH----------H-HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------HHH----------H-HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 222334333 56788888777665211 000 0 011 122333334468889999999
Q ss_pred hhhHHHHHHHhhc
Q 021611 271 ADAAKLHILAACE 283 (310)
Q Consensus 271 ~d~A~~~~~kAl~ 283 (310)
+++|...|+++.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.01 E-value=1.8e-06 Score=70.02 Aligned_cols=121 Identities=18% Similarity=0.062 Sum_probs=71.4
Q ss_pred cccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHH
Q 021611 138 GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 217 (310)
Q Consensus 138 g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~ 217 (310)
+++++|+..|.++.+..+. .+. +|.++...+.+++|++.|+++.+.. ++.+ ...++..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~a--~~~Lg~~-------------- 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACELN--SGNG--CRFLGDF-------------- 66 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHTT--CHHH--HHHHHHH--------------
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCC--CHHH--HHHHHHH--------------
Confidence 5667777777777776533 333 7777777777777777777777662 2332 2222211
Q ss_pred hcCCChhhHHHHHHhhcC---CCChHHHHHHhcCCCCcchhHhhhhhhhhhhh----ccchhhHHHHHHHhhcCCCCCCC
Q 021611 218 VGRDPRPVMREAYNMFKG---GGDPEKLVAAFSSGRENEYFYASLYAGLFYES----QKKADAAKLHILAACESPYGQRS 290 (310)
Q Consensus 218 ~~~d~~~~~~~a~~l~~~---~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~----~G~~d~A~~~~~kAl~~~~~~~s 290 (310)
++.+ ..++++++..+..........+.+.+|.+|.. .+++++|+.+|++|++.. +
T Consensus 67 --------------y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~ 128 (138)
T 1klx_A 67 --------------YENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG----S 128 (138)
T ss_dssp --------------HHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred --------------HHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC----C
Confidence 0111 22333333333322112345567789999888 899999999999999932 3
Q ss_pred hHHHHHHH
Q 021611 291 DDYMAALA 298 (310)
Q Consensus 291 ~~~~~~la 298 (310)
.+...+|+
T Consensus 129 ~~A~~~l~ 136 (138)
T 1klx_A 129 EDACGILN 136 (138)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 45555554
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.99 E-value=1.2e-06 Score=86.51 Aligned_cols=115 Identities=9% Similarity=0.002 Sum_probs=85.4
Q ss_pred cccchhhhhhhhcC------CCCchhHHHHHHHhhhhheeccccccchhhhhhccccC--------cchhhHHHhhccch
Q 021611 103 FIPSVSGIWDALTG------GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD--------PRQKAYLWQRGLSL 168 (310)
Q Consensus 103 ~~~~a~~~~~~ai~------~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~--------P~~~~a~~~~G~a~ 168 (310)
-+.+|..++.+++. |.-+|+-+..+.++|.+|..+|+|++|+..+++++++. |+-...++++|.+|
T Consensus 324 ~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 403 (490)
T 3n71_A 324 LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTN 403 (490)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34456666655532 35688888999999999999999999999999999873 55677899999999
Q ss_pred hhhhhhhhhhhhhhhhhcc-----CCCCCccc-eeeeehhh--hhcChHHHHHhHHH
Q 021611 169 YYLDRFEEGAEQFRIDVAQ-----NPNDTEES-IWCFLCEA--QLYGVDEARNRFLE 217 (310)
Q Consensus 169 ~~lg~~~eA~~~f~~Al~l-----~P~d~~~~-~~~~l~~a--~l~~~~eA~~~l~~ 217 (310)
..+|+|++|+..|++|+++ -|+++... ....++.+ .++.+++|...+.+
T Consensus 404 ~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 404 WHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999884 67776421 11122222 35556666555543
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.92 E-value=1.9e-06 Score=79.71 Aligned_cols=87 Identities=9% Similarity=-0.013 Sum_probs=78.3
Q ss_pred cccchhhhhhhhcCCCCchh--HHHHHHHhhhhheec-----cccccchhhhhhccccCcch-hhHHHhhccchhhh-hh
Q 021611 103 FIPSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQ-----GDVVGSVAEFDKAIELDPRQ-KAYLWQRGLSLYYL-DR 173 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~--~~~a~~~rG~~~~~~-----g~~~eAl~~f~kAl~l~P~~-~~a~~~~G~a~~~l-g~ 173 (310)
..+.+.....+++. ++|+ +..+|..+|..|... |+.+.|.++|+|||+++|+. ..+++..|..+... |+
T Consensus 178 ~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 44567788889998 9998 778999999999995 99999999999999999975 99999999999885 99
Q ss_pred hhhhhhhhhhhhccCCCC
Q 021611 174 FEEGAEQFRIDVAQNPND 191 (310)
Q Consensus 174 ~~eA~~~f~~Al~l~P~d 191 (310)
+++|...+++++..+|..
T Consensus 256 ~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 256 RAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 999999999999999975
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.87 E-value=4.2e-06 Score=77.39 Aligned_cols=106 Identities=10% Similarity=-0.049 Sum_probs=81.2
Q ss_pred hhhcCCCCchhHHHHHHHhhhhhee-----ccc------cccchhhhhhccccCcc--hhhHHHhhccchhhh-----hh
Q 021611 112 DALTGGNNNSREAVVAIRRGMLLFR-----QGD------VVGSVAEFDKAIELDPR--QKAYLWQRGLSLYYL-----DR 173 (310)
Q Consensus 112 ~~ai~~~~~P~~~~a~~~rG~~~~~-----~g~------~~eAl~~f~kAl~l~P~--~~~a~~~~G~a~~~l-----g~ 173 (310)
.+++. ..+|+++++++-.|.+... .|+ ..+|...++|||++||+ +..+|..+|.+|... |+
T Consensus 141 ~~~l~-~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 141 HKVLS-RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp HHHHT-TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred HHHHH-HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 33443 4789999888877766533 233 35788899999999999 677999999999996 99
Q ss_pred hhhhhhhhhhhhccCCCC-Cccceeeeehhhh-hcChHHHHHhHHHh
Q 021611 174 FEEGAEQFRIDVAQNPND-TEESIWCFLCEAQ-LYGVDEARNRFLEV 218 (310)
Q Consensus 174 ~~eA~~~f~~Al~l~P~d-~~~~~~~~l~~a~-l~~~~eA~~~l~~~ 218 (310)
.++|.++|++|++++|+. ....+.++-.... .++.+++.+.+.++
T Consensus 220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999975 7654444333334 47788888887774
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.84 E-value=3.2e-06 Score=80.64 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=69.1
Q ss_pred CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 118 ~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~ 192 (310)
..+|.++.+|..+|.+++..|++++|+..+++|++++|+ +.+|..+|.++...|++++|++.|++|+.++|.++
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 378999999999999999999999999999999999985 67888999999999999999999999999999764
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.76 E-value=6.7e-06 Score=80.03 Aligned_cols=89 Identities=11% Similarity=0.039 Sum_probs=73.9
Q ss_pred cchhhhhhhhcC------CCCchhHHHHHHHhhhhheeccccccchhhhhhcccc--------CcchhhHHHhhccchhh
Q 021611 105 PSVSGIWDALTG------GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSLYY 170 (310)
Q Consensus 105 ~~a~~~~~~ai~------~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~~~ 170 (310)
.+|..++.+++. |.-+|+-+..+.++|.+|..+|+|++|+..+++++++ +|+-...++++|.+|..
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 394 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG 394 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 455666665532 2567788899999999999999999999999999987 46667789999999999
Q ss_pred hhhhhhhhhhhhhhhcc-----CCCCCc
Q 021611 171 LDRFEEGAEQFRIDVAQ-----NPNDTE 193 (310)
Q Consensus 171 lg~~~eA~~~f~~Al~l-----~P~d~~ 193 (310)
+|+|++|+..|++|+++ -|++|.
T Consensus 395 qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 395 LENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 99999999999999885 455543
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.67 E-value=2.5e-05 Score=75.99 Aligned_cols=33 Identities=15% Similarity=0.029 Sum_probs=28.0
Q ss_pred cchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 252 NEYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 252 ~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
|+....+.++|.+|..+|++++|+.+|++|+++
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 344445667999999999999999999999985
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.66 E-value=9.3e-06 Score=65.76 Aligned_cols=105 Identities=12% Similarity=-0.017 Sum_probs=77.9
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhh----hhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY----LDRFEEGA 178 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~----lg~~~eA~ 178 (310)
....|...|.++.. .+ ++.+. +|.+|...+..++|+.+|++|.+. +++.+.+++|.++.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~--~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACE--LN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHH--TT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHc--CC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45567788887765 33 33444 999999999999999999999997 678999999999998 89999999
Q ss_pred hhhhhhhccCCCCCccceeeeehhhh----hcChHHHHHhHHH
Q 021611 179 EQFRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLE 217 (310)
Q Consensus 179 ~~f~~Al~l~P~d~~~~~~~~l~~a~----l~~~~eA~~~l~~ 217 (310)
+.|+++.+. +++.+....+..... .+++++|...+.+
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 999999987 345533322222222 3556677666665
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.66 E-value=8.4e-06 Score=77.77 Aligned_cols=39 Identities=5% Similarity=-0.021 Sum_probs=21.4
Q ss_pred cccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCC
Q 021611 151 IELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP 189 (310)
Q Consensus 151 l~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P 189 (310)
+.++|.++.++.-+|.++...|++++|+..+++|+++||
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~ 308 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 344455555555555555555555555555555555554
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.65 E-value=1.1e-05 Score=78.17 Aligned_cols=84 Identities=12% Similarity=0.038 Sum_probs=59.4
Q ss_pred ccchhhhhhhhcC------CCCchhHHHHHHHhhhhheeccccccchhhhhhcccc--------CcchhhHHHhhccchh
Q 021611 104 IPSVSGIWDALTG------GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKAYLWQRGLSLY 169 (310)
Q Consensus 104 ~~~a~~~~~~ai~------~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--------~P~~~~a~~~~G~a~~ 169 (310)
+.+|..++.+++. |..+|.-...+.++|.+|..+|+|++|+..+.+++++ +|+-...++++|.+|.
T Consensus 303 ~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~ 382 (429)
T 3qwp_A 303 WEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL 382 (429)
T ss_dssp HHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH
Confidence 3445555555432 2456666677888888888888888888888888765 3445566778888888
Q ss_pred hhhhhhhhhhhhhhhhcc
Q 021611 170 YLDRFEEGAEQFRIDVAQ 187 (310)
Q Consensus 170 ~lg~~~eA~~~f~~Al~l 187 (310)
.+|++++|+..|++|+++
T Consensus 383 ~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 383 HQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 888888888888888764
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.54 E-value=2.1e-05 Score=76.26 Aligned_cols=96 Identities=15% Similarity=-0.081 Sum_probs=65.3
Q ss_pred heeccccccchhhhhhccccC--------cchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhh
Q 021611 134 LFRQGDVVGSVAEFDKAIELD--------PRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL 205 (310)
Q Consensus 134 ~~~~g~~~eAl~~f~kAl~l~--------P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l 205 (310)
+..+|+|++|++.+++++++. |.-...+.++|.+|..+|+|++|+..+++++++--.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~--------------- 361 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI--------------- 361 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------------
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH---------------
Confidence 445677777777777777652 333456667777777777777777777777654210
Q ss_pred cChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 206 YGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 206 ~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
.+ -...|+.....+.+|.+|..+|++++|+.+|++|+++
T Consensus 362 --------------------------~l--------------g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 362 --------------------------FF--------------PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp --------------------------HS--------------CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------------Hc--------------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 00 0012333445567999999999999999999999985
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.44 E-value=3.9e-05 Score=58.56 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=56.4
Q ss_pred CcchhhHHHhhccchhhhhh---hhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHh
Q 021611 154 DPRQKAYLWQRGLSLYYLDR---FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 154 ~P~~~~a~~~~G~a~~~lg~---~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~ 218 (310)
+|+++..+..+|.+++..++ .++|...|+++++++|+++.+....+....+.|++++|+..+.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 68899999999999987776 799999999999999999987665555556889999999988874
No 216
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.35 E-value=4e-05 Score=62.23 Aligned_cols=86 Identities=12% Similarity=0.187 Sum_probs=73.3
Q ss_pred hhhhhhhhcCCCCchhHHHHHHHhhhhheecccccc---chhhhhhccccC-c-chhhHHHhhccchhhhhhhhhhhhhh
Q 021611 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVG---SVAEFDKAIELD-P-RQKAYLWQRGLSLYYLDRFEEGAEQF 181 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~e---Al~~f~kAl~l~-P-~~~~a~~~~G~a~~~lg~~~eA~~~f 181 (310)
....|..... .++.+..+-|+.|++++...+..+ +|..++..++-+ | ..-..+|.+|+.++++|+|++|+..+
T Consensus 20 ~~~~y~~e~~--~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 20 FEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344554444 456678999999999999888887 999999999998 7 56899999999999999999999999
Q ss_pred hhhhccCCCCCcc
Q 021611 182 RIDVAQNPNDTEE 194 (310)
Q Consensus 182 ~~Al~l~P~d~~~ 194 (310)
+..++++|++..+
T Consensus 98 ~~lL~~eP~n~QA 110 (126)
T 1nzn_A 98 RGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHCTTCHHH
T ss_pred HHHHHhCCCCHHH
Confidence 9999999998763
No 217
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.72 E-value=0.0015 Score=66.86 Aligned_cols=175 Identities=7% Similarity=-0.076 Sum_probs=119.2
Q ss_pred cchh-hhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccC-----------c-----------chhhHH
Q 021611 105 PSVS-GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----------P-----------RQKAYL 161 (310)
Q Consensus 105 ~~a~-~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~-----------P-----------~~~~a~ 161 (310)
+++. .++.+++. ..|.+...|+..+......|++++|.+.|+++++.- | +....|
T Consensus 360 ~~a~r~il~rAi~--~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 360 STVITKYLKLGQQ--CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp TTHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 4454 77888887 889999999999999999999999999999999852 4 244578
Q ss_pred Hhhccchhhhhhhhhhhhhhhhhhcc-CCCCCccceeeeehhh--hhcC-hHHHHHhHHHhc---CCChhhHHHHHHhhc
Q 021611 162 WQRGLSLYYLDRFEEGAEQFRIDVAQ-NPNDTEESIWCFLCEA--QLYG-VDEARNRFLEVG---RDPRPVMREAYNMFK 234 (310)
Q Consensus 162 ~~~G~a~~~lg~~~eA~~~f~~Al~l-~P~d~~~~~~~~l~~a--~l~~-~~eA~~~l~~~~---~d~~~~~~~a~~l~~ 234 (310)
........+.|..+.|...|.+|++. .+.... .|...+.. +.++ .+.|+..+.+.. ++....+.....+..
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~--lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD--IYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 88888888899999999999999987 332222 33222222 3444 788888776532 333333322223444
Q ss_pred CCCChHHHHHHhcCC--CCc---chhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 235 GGGDPEKLVAAFSSG--REN---EYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 235 ~~~~~e~al~~~~~~--~~~---d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
..++.+.+...++.. ..+ .....+......-...|+.+.+...++++++
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457778777776522 112 1222222233445567999999999999998
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.20 E-value=0.00087 Score=51.31 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=49.7
Q ss_pred ccchhhhhhhhcCC-----CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhc
Q 021611 104 IPSVSGIWDALTGG-----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRG 165 (310)
Q Consensus 104 ~~~a~~~~~~ai~~-----~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G 165 (310)
+..|..-+.+++.. ...+..+.++..+|.+++.+|++++|+..++++++++|++..+..+++
T Consensus 21 y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 21 YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 44455555555431 023467899999999999999999999999999999999999988887
No 219
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.93 E-value=0.0031 Score=51.49 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=62.7
Q ss_pred HHHHHHHhhhhheecccc---ccchhhhhhccccCcc-hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCcc
Q 021611 123 EAVVAIRRGMLLFRQGDV---VGSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEE 194 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~---~eAl~~f~kAl~l~P~-~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~ 194 (310)
++.+-|+.+++++...+. .++|..++..++-+|. .-..+|.+++.++++|+|++|....+..++++|++..+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 468888898888876554 4789999999999995 58899999999999999999999999999999998653
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.86 E-value=0.0007 Score=56.61 Aligned_cols=80 Identities=9% Similarity=0.067 Sum_probs=66.5
Q ss_pred cccccchhhhhhccccCcchhhHHHhhccchhhhh---hhhhhhhhhhhhhccC-C-CCCccceeeeehhhhhcChHHHH
Q 021611 138 GDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLD---RFEEGAEQFRIDVAQN-P-NDTEESIWCFLCEAQLYGVDEAR 212 (310)
Q Consensus 138 g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg---~~~eA~~~f~~Al~l~-P-~d~~~~~~~~l~~a~l~~~~eA~ 212 (310)
.....+.+.|.+.++.+|.+..+.++.|.++.+.+ +.++++..|+..++.+ | +..++.++.+++..+++++++|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34456778888888889989999999999999987 8889999999999998 7 34555565666667999999999
Q ss_pred HhHHH
Q 021611 213 NRFLE 217 (310)
Q Consensus 213 ~~l~~ 217 (310)
..+.+
T Consensus 92 ~y~~~ 96 (152)
T 1pc2_A 92 KYVRG 96 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98766
No 221
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.60 E-value=0.0081 Score=50.20 Aligned_cols=109 Identities=12% Similarity=0.077 Sum_probs=79.0
Q ss_pred CchhHHHHHHHhhhhheecccc------ccchhhhhhccccCcchh--------hHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 119 NNSREAVVAIRRGMLLFRQGDV------VGSVAEFDKAIELDPRQK--------AYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 119 ~~P~~~~a~~~rG~~~~~~g~~------~eAl~~f~kAl~l~P~~~--------~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
++|+|++.|...-..+-..|+. +.-++.|++|+..-|-.. ..|...+ .+..+++.++|.+.|+.|
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHH
Confidence 7899999999999988888999 888899999998877421 1222333 336679999999999999
Q ss_pred hccCCCCCccceeeeehhh--hhcChHHHHHhHHH---hcCCChhhHHHHH
Q 021611 185 VAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLE---VGRDPRPVMREAY 230 (310)
Q Consensus 185 l~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~---~~~d~~~~~~~a~ 230 (310)
+.+..++ +.+|...+.. +.|+.+.|+..+.+ ..+.|...+..+.
T Consensus 87 ~~~hKkF--AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 87 RANCKKF--AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHHCTTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HHHhHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 9986666 5566665554 67899999998776 2344444443343
No 222
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.53 E-value=0.005 Score=50.84 Aligned_cols=73 Identities=11% Similarity=0.112 Sum_probs=64.1
Q ss_pred hhHHHHHHHhhhhheeccccc---cchhhhhhccccCcc-hhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 121 SREAVVAIRRGMLLFRQGDVV---GSVAEFDKAIELDPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~---eAl~~f~kAl~l~P~-~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
+-++.+-|+.+++++...+.+ ++|..++..++-+|. .-..+|.+++.++++|+|++|....+..++++|++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 456788899999998876554 799999999998884 5789999999999999999999999999999998865
No 223
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.27 E-value=0.016 Score=56.73 Aligned_cols=55 Identities=11% Similarity=-0.020 Sum_probs=47.8
Q ss_pred hhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhh
Q 021611 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQR 164 (310)
Q Consensus 107 a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~ 164 (310)
+..+|.+++. ..|..+..|+..+..+...|+.++|...|++|++. |.+...+...
T Consensus 198 v~~~ye~al~--~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y 252 (493)
T 2uy1_A 198 MHFIHNYILD--SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYY 252 (493)
T ss_dssp HHHHHHHHHH--HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHH
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4567888887 78999999999999999999999999999999999 9876655543
No 224
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.28 E-value=0.014 Score=57.01 Aligned_cols=157 Identities=4% Similarity=-0.134 Sum_probs=90.9
Q ss_pred cchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc--
Q 021611 142 GSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG-- 219 (310)
Q Consensus 142 eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~-- 219 (310)
.....|++++...|..+..|+..+..+...|+.++|.+.|++|+.. |++.. +|...+.. ...++....+.+.-
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~--l~~~y~~~--~e~~~~~~~l~~~~~~ 271 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF--LSLYYGLV--MDEEAVYGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH--HHHHHHHH--TTCTHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH--HHHHHHhh--cchhHHHHHHHHHHHh
Confidence 3567999999999999999999999999999999999999999999 98753 44432222 11112222221110
Q ss_pred -C------CCh---hhHHHHHHhh-cCCCChHHHHHHhcCCCCcchhHhhhhh--hhhhhhcc-chhhHHHHHHHhhcCC
Q 021611 220 -R------DPR---PVMREAYNMF-KGGGDPEKLVAAFSSGRENEYFYASLYA--GLFYESQK-KADAAKLHILAACESP 285 (310)
Q Consensus 220 -~------d~~---~~~~~a~~l~-~~~~~~e~al~~~~~~~~~d~~~a~~~l--G~~~~~~G-~~d~A~~~~~kAl~~~ 285 (310)
. .+. ......|.-+ ...+..+.+...+.....+. ...+.+. +.+-...| +.+.|+..|+++++ .
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~-~ 349 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLL-K 349 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH-H
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHH-H
Confidence 0 001 1111222222 12234565555544221111 1123333 33333344 69999999999998 3
Q ss_pred CCCCChHHHHHHHHHhhcccC
Q 021611 286 YGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 286 ~~~~s~~~~~~la~~~~~~~~ 306 (310)
++ .+++++...+..+..+|+
T Consensus 350 ~~-~~~~~~~~yid~e~~~~~ 369 (493)
T 2uy1_A 350 HP-DSTLLKEEFFLFLLRIGD 369 (493)
T ss_dssp CT-TCHHHHHHHHHHHHHHTC
T ss_pred CC-CCHHHHHHHHHHHHHcCC
Confidence 33 456666655665555554
No 225
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=92.83 E-value=0.2 Score=49.10 Aligned_cols=152 Identities=15% Similarity=0.022 Sum_probs=97.9
Q ss_pred HHHhhhhheeccccccchhhhhhcccc--CcchhhHHHhhc---------cchhhhhhhhhhhhhhhhhhcc--CCCCCc
Q 021611 127 AIRRGMLLFRQGDVVGSVAEFDKAIEL--DPRQKAYLWQRG---------LSLYYLDRFEEGAEQFRIDVAQ--NPNDTE 193 (310)
Q Consensus 127 ~~~rG~~~~~~g~~~eAl~~f~kAl~l--~P~~~~a~~~~G---------~a~~~lg~~~eA~~~f~~Al~l--~P~d~~ 193 (310)
+...=..+.+.|+.++|++.|++..+. .|+-. .|..+= ......++.++|.+.|++..+. .|+.
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~-tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~-- 105 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQY-HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE-- 105 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH--
Confidence 444446778999999999999997764 46532 222111 1123457789999999987764 4542
Q ss_pred cceeeee--hhhhhcChHHHHHhHHHhcC---CChhh-HHHHHHhhcCCCChHHHHHHhc----CCCCcchhHhhhhhhh
Q 021611 194 ESIWCFL--CEAQLYGVDEARNRFLEVGR---DPRPV-MREAYNMFKGGGDPEKLVAAFS----SGRENEYFYASLYAGL 263 (310)
Q Consensus 194 ~~~~~~l--~~a~l~~~~eA~~~l~~~~~---d~~~~-~~~a~~l~~~~~~~e~al~~~~----~~~~~d~~~a~~~lG~ 263 (310)
..+..+ +..+.|+.++|...+.++.. .|... +..+...+...|+.++|.+.+. .+..|+.. .+..+-.
T Consensus 106 -~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~-ty~~Li~ 183 (501)
T 4g26_A 106 -ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP-ELAALLK 183 (501)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH-HHHHHHH
T ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHH
Confidence 233333 23478999999998876432 23322 2333444566788998887774 33444432 2334556
Q ss_pred hhhhccchhhHHHHHHHhhc
Q 021611 264 FYESQKKADAAKLHILAACE 283 (310)
Q Consensus 264 ~~~~~G~~d~A~~~~~kAl~ 283 (310)
.+...|+.++|.+.|++..+
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHH
Confidence 78889999999999999876
No 226
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.80 E-value=0.013 Score=49.55 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=48.4
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCc---chhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP---RQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL 200 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P---~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l 200 (310)
+.+.+.+|.+++..|+|..|+..|++||++.- +.....-..|. ...+.+. ..+ +.+.+..++.+.
T Consensus 63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~----~ss~p~s-------~~~-~~e~Elkykia~ 130 (167)
T 3ffl_A 63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN----SASTPQS-------QCL-PSEIEVKYKLAE 130 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------------------------------CC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc----cCCCccc-------ccc-cchHHHHHHHHH
Confidence 35778888888888888888888888776643 22222111110 0111110 111 223445566777
Q ss_pred hhhhhcChHHHHHhHHHhcCC
Q 021611 201 CEAQLYGVDEARNRFLEVGRD 221 (310)
Q Consensus 201 ~~a~l~~~~eA~~~l~~~~~d 221 (310)
|...++++++|+..++.+...
T Consensus 131 C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 131 CYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHCCHHHHHHHHhcCCch
Confidence 888888899999888887654
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.72 E-value=0.016 Score=49.08 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=52.8
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhh---------HHHhhccchhhhhhhhhhhhhhhhhhccC
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKA---------YLWQRGLSLYYLDRFEEGAEQFRIDVAQN 188 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~---------a~~~~G~a~~~lg~~~eA~~~f~~Al~l~ 188 (310)
.+++.-...++..|.|+.|+-..+.++.+..+++. .++..|.+++..|+|..|...|++|+.+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 45566667778889999999999998887655444 77899999999999999999999997753
No 228
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.56 E-value=0.082 Score=48.04 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=55.7
Q ss_pred hheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611 133 LLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 133 ~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~ 192 (310)
.+++.|+.++|++.....|+-+|.+......+-..+...|+|+.|.+.++.+.+++|+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 467789999999999999999999999999999999999999999999999999999653
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.21 E-value=0.073 Score=42.88 Aligned_cols=58 Identities=7% Similarity=0.006 Sum_probs=46.8
Q ss_pred hhhhhhhhcCCCCc-h-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhcc
Q 021611 107 VSGIWDALTGGNNN-S-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGL 166 (310)
Q Consensus 107 a~~~~~~ai~~~~~-P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~ 166 (310)
...+...+.. .+ | ..-+..|.+|..+.++|+|++|...++..|+++|++.++.--+..
T Consensus 57 GI~lLe~l~~--~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 57 GIVLLEELLP--KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHh--cCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3455555555 34 6 677999999999999999999999999999999999888654433
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.40 E-value=0.081 Score=50.14 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=48.3
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
.+...++.++...|++++|+....+++..+|-+..+|..+-.+++..|+..+|++.|+++-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556677777888888888888888888888877888888888888888888888877643
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.79 E-value=0.33 Score=48.63 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=27.1
Q ss_pred eeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 135 FRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 135 ~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
+..|++++|.+.... .+++..|..+|......|+++.|+++|.++
T Consensus 663 l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 334555555544322 233466667777777777777777777765
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.43 E-value=0.19 Score=52.00 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=57.1
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV 185 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al 185 (310)
....+...+..++..|+|+-|++.-.+|+..-|.....|+.++.+|..+|+|+.|+-.++-+=
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345666678888889999999999999999999999999999999999999999999998883
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.90 E-value=0.19 Score=40.82 Aligned_cols=49 Identities=10% Similarity=0.039 Sum_probs=42.0
Q ss_pred Cch-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccc
Q 021611 119 NNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLS 167 (310)
Q Consensus 119 ~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a 167 (310)
.+| ..-+.+|.++..+.++|+|++|....++.++++|++.+|.--+..+
T Consensus 72 ~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 72 EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 456 4568999999999999999999999999999999998886554444
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.00 E-value=0.38 Score=40.09 Aligned_cols=86 Identities=10% Similarity=-0.023 Sum_probs=68.5
Q ss_pred hhhhhhhhcCC------CCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 107 VSGIWDALTGG------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 107 a~~~~~~ai~~------~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
..+.|.+++.. .......-.|+..+.. ...++.++|-+.|+.++.+...|+..|...+....+.|+.+.|.+.
T Consensus 38 lrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkI 116 (161)
T 4h7y_A 38 LIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQL 116 (161)
T ss_dssp HHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 44556665541 1222455677777755 5669999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCc
Q 021611 181 FRIDVAQNPNDTE 193 (310)
Q Consensus 181 f~~Al~l~P~d~~ 193 (310)
+.+|+.+.|...+
T Consensus 117 Lg~AiG~~~k~~~ 129 (161)
T 4h7y_A 117 LQKAVERGAVPLE 129 (161)
T ss_dssp HHHHHHTTCBCHH
T ss_pred HHHHhccCCCcHH
Confidence 9999999997654
No 235
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=84.96 E-value=0.51 Score=46.13 Aligned_cols=111 Identities=9% Similarity=0.003 Sum_probs=81.5
Q ss_pred cccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhcccc--CcchhhHHHhhccchhhhhhhhhhhhh
Q 021611 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--DPRQKAYLWQRGLSLYYLDRFEEGAEQ 180 (310)
Q Consensus 103 ~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l--~P~~~~a~~~~G~a~~~lg~~~eA~~~ 180 (310)
....|..+|++.....+.|+ ...|..+-..+.+.|+.++|++.|++..+. .|+ ...|..+=.++.+.|+.++|.+.
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCCHHHHHHH
Confidence 34567788887654335665 467888888999999999999999987654 565 44566677788899999999999
Q ss_pred hhhhhcc--CCCCCccceeeee--hhhhhcChHHHHHhHHHh
Q 021611 181 FRIDVAQ--NPNDTEESIWCFL--CEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 181 f~~Al~l--~P~d~~~~~~~~l--~~a~l~~~~eA~~~l~~~ 218 (310)
|++..+. .|+.. .+..+ +..+.|+.++|.+.+.+.
T Consensus 163 ~~~M~~~G~~Pd~~---ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 163 DAHMVESEVVPEEP---ELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHTTCCCCHH---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHH---HHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 9998774 45432 33333 234789999999987764
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=83.18 E-value=1.1 Score=37.95 Aligned_cols=45 Identities=7% Similarity=-0.054 Sum_probs=28.0
Q ss_pred eccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhh
Q 021611 136 RQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDV 185 (310)
Q Consensus 136 ~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al 185 (310)
..|+++.|.+..++. ++..-|..+|..-...|+++-|..+|.++-
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 346666666655433 345566667777777777777777766653
No 237
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=82.78 E-value=1.3 Score=37.95 Aligned_cols=109 Identities=14% Similarity=0.137 Sum_probs=65.2
Q ss_pred CcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhc-----CCChhhHHH
Q 021611 154 DPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVG-----RDPRPVMRE 228 (310)
Q Consensus 154 ~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~-----~d~~~~~~~ 228 (310)
-|..++.-.-++++++..|+|..++-.+. .+|. ....++..+|.-+++++..|+..+.++. .||... ..
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~---~lNT--~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d-~~ 102 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLH---KLNT--CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD-AR 102 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHH---TCCB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC-HH
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHH---hcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc-cc
Confidence 35555667778888888888887776643 2332 3344556677778888888888776643 222211 11
Q ss_pred HHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 229 AYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 229 a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
.-.+|. .+.|.......+|.+..+.|+.++|+.+|...-.
T Consensus 103 ~~~ffv---------------d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 103 IQEMFV---------------DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHTTSC---------------CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cceeee---------------ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 111222 1233344444688999999999999999987443
No 238
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=82.72 E-value=0.35 Score=47.59 Aligned_cols=68 Identities=9% Similarity=-0.059 Sum_probs=60.6
Q ss_pred HHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCC
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDT 192 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~ 192 (310)
..+..+|.+......++.|...|.+|+.+.|+...+|+++|.+....|+.-+|+-.|-+++....-++
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~ 220 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP 220 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh
Confidence 35677888888888899999999999999999999999999999999999999999999998765343
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.53 E-value=0.38 Score=39.52 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=40.0
Q ss_pred Cch-hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhc
Q 021611 119 NNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRG 165 (310)
Q Consensus 119 ~~P-~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G 165 (310)
.+| ..-+..|.++..+.++|+|++|....+..++++|++.++.--+.
T Consensus 71 ~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 71 EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 344 45688999999999999999999999999999999988765443
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.66 E-value=1.4 Score=41.55 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=51.3
Q ss_pred HHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeee--hhhhhcChHHHHHhHHH--------hcCCChhhHHHH
Q 021611 160 YLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFL--CEAQLYGVDEARNRFLE--------VGRDPRPVMREA 229 (310)
Q Consensus 160 a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l--~~a~l~~~~eA~~~l~~--------~~~d~~~~~~~a 229 (310)
+...++.++...|++++|+..+++.+..+|-+-. +|..+ ++.+.|+..+|++.+.+ .+-+|.+.+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~--~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREP--LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3445677788899999999999999999997654 44443 44478999999887654 355677766666
Q ss_pred HH
Q 021611 230 YN 231 (310)
Q Consensus 230 ~~ 231 (310)
+.
T Consensus 251 ~~ 252 (388)
T 2ff4_A 251 NE 252 (388)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 241
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.50 E-value=2.1 Score=43.11 Aligned_cols=152 Identities=7% Similarity=-0.150 Sum_probs=89.3
Q ss_pred HHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhh
Q 021611 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL 205 (310)
Q Consensus 126 a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l 205 (310)
.+...+..+...+...++...++++....+++...-+..+.+ ++.|+++.|...|++.-.-.+..+...+|.+.+...+
T Consensus 254 ~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~A-lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~ 332 (618)
T 1qsa_A 254 LRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA-LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLER 332 (618)
T ss_dssp HHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHH-HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHc
Confidence 333444455555556788888888766555554444445554 4679999999999876654444455668888777788
Q ss_pred cChHHHHHhHHHhcCCChhhHHHHH-HhhcCCCChHHHHHHhcCCC-Ccc--hhHhhhhhhhhhhhccchhhHHHHHHHh
Q 021611 206 YGVDEARNRFLEVGRDPRPVMREAY-NMFKGGGDPEKLVAAFSSGR-ENE--YFYASLYAGLFYESQKKADAAKLHILAA 281 (310)
Q Consensus 206 ~~~~eA~~~l~~~~~d~~~~~~~a~-~l~~~~~~~e~al~~~~~~~-~~d--~~~a~~~lG~~~~~~G~~d~A~~~~~kA 281 (310)
|+.++|...+.++... ...++.+. ..++...... ...... ... .....+-.+..+...|+...|...+...
T Consensus 333 g~~~~a~~~~~~~a~~-~~fYg~lAa~~Lg~~~~~~----~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~ 407 (618)
T 1qsa_A 333 GREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELK----IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL 407 (618)
T ss_dssp TCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCC----CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-CChHHHHHHHHcCCCCCCC----CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHH
Confidence 9999998888876542 33333221 1111100000 000000 000 1112234566777889999998888888
Q ss_pred hc
Q 021611 282 CE 283 (310)
Q Consensus 282 l~ 283 (310)
++
T Consensus 408 ~~ 409 (618)
T 1qsa_A 408 VK 409 (618)
T ss_dssp HT
T ss_pred Hh
Confidence 76
No 242
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.78 E-value=0.61 Score=46.11 Aligned_cols=137 Identities=14% Similarity=0.028 Sum_probs=45.4
Q ss_pred hheeccccccchhhhhhcc-----------ccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611 133 LLFRQGDVVGSVAEFDKAI-----------ELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC 201 (310)
Q Consensus 133 ~~~~~g~~~eAl~~f~kAl-----------~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~ 201 (310)
.++..+++++|.+.-+..+ .+|+-....|+..+.++...|+..+.........++.|.-.. .++..+
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~--~~rta~ 222 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMK--FLKIAS 222 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHH--HHHHCC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHH--HHHHHh
Confidence 4667889998888776655 235556778888888888888888776655555554442100 011100
Q ss_pred hhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCC-------CCcchhHhhhhhhhhhhhccchhhH
Q 021611 202 EAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSG-------RENEYFYASLYAGLFYESQKKADAA 274 (310)
Q Consensus 202 ~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~-------~~~d~~~a~~~lG~~~~~~G~~d~A 274 (310)
+ +.....+| ..+......|-..+.+++|....... .+.....-.||+|.++..+++|.+|
T Consensus 223 l-r~D~~~qa------------~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA 289 (523)
T 4b4t_S 223 L-KHDNETKA------------MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTA 289 (523)
T ss_dssp S-CSSSCHHH------------HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred c-ccCcchhH------------HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 1 00111111 01112222233344566665555321 1223345577899999999999999
Q ss_pred HHHHHHhhcC
Q 021611 275 KLHILAACES 284 (310)
Q Consensus 275 ~~~~~kAl~~ 284 (310)
.+++..|+..
T Consensus 290 ~~~L~~A~rk 299 (523)
T 4b4t_S 290 NEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHHHHHh
Confidence 9999999984
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=76.81 E-value=1.8 Score=43.16 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=54.3
Q ss_pred hhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhh--hhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHH
Q 021611 168 LYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA--QLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAA 245 (310)
Q Consensus 168 ~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a--~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~ 245 (310)
...+|++++|.+..+. ++ ++ ..|..++.. +.++++.|..++.++..- ..+..++...++.+...+.
T Consensus 662 ~l~~~~~~~A~~~~~~---~~--~~--~~W~~la~~al~~~~~~~A~~~y~~~~d~-----~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD---ES--AE--MKWRALGDASLQRFNFKLAIEAFTNAHDL-----ESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHTCHHHHHHHHTT---CC--CH--HHHHHHHHHHHHTTCHHHHHHHHHHHTCH-----HHHHHHHHHTTCHHHHHHH
T ss_pred hhhcCCHHHHHHHHHh---hC--cH--hHHHHHHHHHHHcCCHHHHHHHHHHccCh-----hhhHHHHHHcCCHHHHHHH
Confidence 3567777777776332 22 23 367777765 678899999998876441 1222222224444443333
Q ss_pred hcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 246 FSSGRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 246 ~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
........... -...++...|++++|++.|.+.-.
T Consensus 730 ~~~a~~~~~~~---~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 730 AKDAETTGKFN---LAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHTTCHH---HHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHcCchH---HHHHHHHHcCCHHHHHHHHHHcCC
Confidence 22111011111 122356668888888888876554
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.58 E-value=1.4 Score=47.37 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=68.2
Q ss_pred hhHHHHHHHhhhhheeccccccchhhhhhccc-cCcc----------------------hhhHHHhhccchhhhhhhhhh
Q 021611 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE-LDPR----------------------QKAYLWQRGLSLYYLDRFEEG 177 (310)
Q Consensus 121 P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~-l~P~----------------------~~~a~~~~G~a~~~lg~~~eA 177 (310)
|.++..-|.+|.+++..|++++|.+.|.+|-. +.++ .+.+|+....++.+.|.++.+
T Consensus 839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v 918 (1139)
T 4fhn_B 839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA 918 (1139)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH
T ss_pred cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH
Confidence 34555669999999999999999999999732 1110 123455555667777999999
Q ss_pred hhhhhhhhccCCCCCc---cceeee--ehhhhhcChHHHHHhHHHh
Q 021611 178 AEQFRIDVAQNPNDTE---ESIWCF--LCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 178 ~~~f~~Al~l~P~d~~---~~~~~~--l~~a~l~~~~eA~~~l~~~ 218 (310)
++.-+.|++..+.+.. ...|.. .+...++++++|...+...
T Consensus 919 i~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 919 LEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 9999999987654432 113332 2333789999999887664
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=63.81 E-value=7.1 Score=32.94 Aligned_cols=86 Identities=12% Similarity=0.031 Sum_probs=50.7
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC 201 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~ 201 (310)
++...|..+|...+..|+++-|+.+|.++=..+- +-.+|.-.|+-+.-.+.-+.|...+..+ ....+
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~--------L~~Ly~~tg~~e~L~kla~iA~~~g~~n-----~af~~ 98 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQHSFDK--------LSFLYLVTGDVNKLSKMQNIAQTREDFG-----SMLLN 98 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH--------HHHHHHHHTCHHHHHHHHHHHHHTTCHH-----HHHHH
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHH--------HHHHHHHhCCHHHHHHHHHHHHHCccHH-----HHHHH
Confidence 4577899999999999999999999888633221 2233344455444333333333322211 11223
Q ss_pred hhhhcChHHHHHhHHHhcC
Q 021611 202 EAQLYGVDEARNRFLEVGR 220 (310)
Q Consensus 202 ~a~l~~~~eA~~~l~~~~~ 220 (310)
...+|+++++++.+.+.+.
T Consensus 99 ~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 99 TFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHTCHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHCCC
Confidence 3367888888887776544
No 246
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.85 E-value=7.7 Score=38.26 Aligned_cols=70 Identities=10% Similarity=0.049 Sum_probs=56.0
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCc-----chhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCc
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP-----RQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTE 193 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P-----~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~ 193 (310)
+..+..+=..|+..+.|+.|....+|+.-..+ ....++|..|.++...++|.+|.++|..|++..|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 34555556678888999999999999863322 12567888999999999999999999999999987653
No 247
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=55.72 E-value=0.23 Score=49.11 Aligned_cols=163 Identities=9% Similarity=-0.039 Sum_probs=90.9
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC 201 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~ 201 (310)
+.|..|..+|.+++..|+..+||+.|=|| -||. .|..--.+-.+.|.|++=+..+.-|-+.-. ++....-...+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHH
Confidence 44788999999999999999999999775 3444 444444445677888888887776665422 22211112234
Q ss_pred hhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcCCCCcchhHhhhhhhhhhhhccchhhHHHHHHHh
Q 021611 202 EAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSSGRENEYFYASLYAGLFYESQKKADAAKLHILAA 281 (310)
Q Consensus 202 ~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kA 281 (310)
.++.++..+-.+.+.. +.....-...-..|. .+.+++|.-.+....+ +--|+.++..+|++..|.+.=+||
T Consensus 126 yAk~~rL~elEefl~~--~N~A~iq~VGDrcf~-e~lYeAAKilys~isN------~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 126 LAKTNRLAELEEFING--PNNAHIQQVGDRCYD-EKMYDAAKLLYNNVSN------FGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHTSCSSSTTTSTTSC--CSSSCTHHHHHHHHH-SCCSTTSSTTGGGSCC------CTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHhhCcHHHHHHHHcC--CCcccHHHHHHHHHH-ccCHHHHHHHHHhCcc------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555554332111111 111111111112233 3344444433332221 113778889999999998877776
Q ss_pred hcCCCCCCChHHHHHHHHHhhcccC
Q 021611 282 CESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 282 l~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
.. ..-|..+..++...+.
T Consensus 197 ns-------~ktWKeV~~ACvd~~E 214 (624)
T 3lvg_A 197 NS-------TRTWKEVCFACVDGKE 214 (624)
T ss_dssp CS-------SCSHHHHTHHHHHSCT
T ss_pred CC-------hhHHHHHHHHHhCchH
Confidence 55 2345666666555443
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=55.39 E-value=4.6 Score=36.52 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=48.0
Q ss_pred hhcccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchh
Q 021611 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (310)
Q Consensus 101 ~~~~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~ 158 (310)
.+-..++.......+. .+|.|+.....+-..+.-.|+++.|+..++.+.+++|...
T Consensus 10 ~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 10 EGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp TTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred CCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 3345556666666676 8999999999999999999999999999999999999873
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.64 E-value=41 Score=35.93 Aligned_cols=155 Identities=8% Similarity=-0.054 Sum_probs=80.0
Q ss_pred hhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhcc-CCCCCccceeeeehhhhhcChHH
Q 021611 132 MLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQ-NPNDTEESIWCFLCEAQLYGVDE 210 (310)
Q Consensus 132 ~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l-~P~d~~~~~~~~l~~a~l~~~~e 210 (310)
..++..|.++-+.+ +..- -|.++..-|.+|.++...|++++|.++|+++..- .+++.. .. ...+
T Consensus 820 ~~l~~~~~~~~~~~-l~~~---~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l--~~---------~~~~ 884 (1139)
T 4fhn_B 820 EKLFLFKQYNACMQ-LIGW---LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ--FA---------VLRE 884 (1139)
T ss_dssp HHHHHHSCTTHHHH-HHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS--CS---------SHHH
T ss_pred HHHHHhhhHHHHHH-Hhhh---ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh--hh---------hhcc
Confidence 34555666655433 3333 3445556688999999999999999999998653 222211 00 0001
Q ss_pred HHHhHHHhcC--C-ChhhHHHHHHhhcCCCChHHHHHHhc-----CCCCcchhH--hhhhhhhhhhhccchhhHHHHHHH
Q 021611 211 ARNRFLEVGR--D-PRPVMREAYNMFKGGGDPEKLVAAFS-----SGRENEYFY--ASLYAGLFYESQKKADAAKLHILA 280 (310)
Q Consensus 211 A~~~l~~~~~--d-~~~~~~~a~~l~~~~~~~e~al~~~~-----~~~~~d~~~--a~~~lG~~~~~~G~~d~A~~~~~k 280 (310)
...+..... . ....+..+..+|...+.++.+++... .....+... .+..+=..+.+.|++++|-..+..
T Consensus 885 -~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 885 -FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp -HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred -cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 111111111 1 11122334446666666665543332 112222212 233355578889999999888865
Q ss_pred hhcCCCCCCChHHHHHHHHHhhccc
Q 021611 281 ACESPYGQRSDDYMAALAKVHSLCR 305 (310)
Q Consensus 281 Al~~~~~~~s~~~~~~la~~~~~~~ 305 (310)
.-... . .-+.+-.|=...|.+|
T Consensus 964 ~pd~~-~--r~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 964 LSTTP-L--KKSCLLDFVNQLTKQG 985 (1139)
T ss_dssp HHHSS-S--CHHHHHHHHHHHHHHC
T ss_pred CCCHH-H--HHHHHHHHHHHHHhCC
Confidence 43311 1 1255555544445444
No 250
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=47.70 E-value=3.6 Score=29.73 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=22.0
Q ss_pred HHhhhhheeccccccchhhhhhccccCcc
Q 021611 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (310)
Q Consensus 128 ~~rG~~~~~~g~~~eAl~~f~kAl~l~P~ 156 (310)
..+|..++..|++++|+.+|-+||..-|.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 56777777778888888888888777664
No 251
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=47.57 E-value=6.8 Score=33.47 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=47.1
Q ss_pred HHHHHHhhhhheeccccccchhhhhhcc--cc---------------CcchhhHHH-hhccchhhhhhhhhhhhhhhhhh
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAI--EL---------------DPRQKAYLW-QRGLSLYYLDRFEEGAEQFRIDV 185 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl--~l---------------~P~~~~a~~-~~G~a~~~lg~~~eA~~~f~~Al 185 (310)
..+.+....+|-.+++|..|+...++.| +. ||.+.+.++ .+|.++-..|+-+||+..|....
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 4555667777778888888888777776 22 244444444 47788888888888888888877
Q ss_pred ccCCCC
Q 021611 186 AQNPND 191 (310)
Q Consensus 186 ~l~P~d 191 (310)
...|=+
T Consensus 142 ~~~~lf 147 (242)
T 3kae_A 142 GKSFLF 147 (242)
T ss_dssp HHCCCH
T ss_pred CCcccc
Confidence 777644
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=44.26 E-value=31 Score=36.48 Aligned_cols=177 Identities=15% Similarity=0.078 Sum_probs=88.3
Q ss_pred HHHHHhhhhheeccccccchhhhhhcccc----Ccc-hhhHHHhhccchhhhhhhhhhhhhhhhhhccCC---CC---C-
Q 021611 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIEL----DPR-QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP---ND---T- 192 (310)
Q Consensus 125 ~a~~~rG~~~~~~g~~~eAl~~f~kAl~l----~P~-~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P---~d---~- 192 (310)
.+...+|+++ .|+.++++..+++-+-- +|. -..+.+.+|+++...++ ++++.+...+.-+. ++ .
T Consensus 377 sA~aSLGlIh--~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ 452 (963)
T 4ady_A 377 TATASLGVIH--KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDV 452 (963)
T ss_dssp HHHHHHHHHT--SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHH
T ss_pred HHHHHhhhhc--cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHH
Confidence 4444555554 47888999999998862 222 25678888888777765 67877777765432 00 1
Q ss_pred -ccceeeeehhhhhcC-hHHHHHhHHHhcCCChhhHH--HHH---HhhcCCCChHHHHHHh---cCCCCcchhHhhhhhh
Q 021611 193 -EESIWCFLCEAQLYG-VDEARNRFLEVGRDPRPVMR--EAY---NMFKGGGDPEKLVAAF---SSGRENEYFYASLYAG 262 (310)
Q Consensus 193 -~~~~~~~l~~a~l~~-~~eA~~~l~~~~~d~~~~~~--~a~---~l~~~~~~~e~al~~~---~~~~~~d~~~a~~~lG 262 (310)
..-+-.+++.+..|. -+++.+.+..+..+.....+ .++ ..+.+.|+.+.+...+ ... ..+.......+|
T Consensus 453 ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalg 531 (963)
T 4ady_A 453 LLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-QHGNITRGLAVG 531 (963)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHH
Confidence 001223455555554 35666666654332222211 112 2244556544433222 211 122322223344
Q ss_pred hhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHHHHHhhcccC
Q 021611 263 LFYESQKKADAAKLHILAACESPYGQRSDDYMAALAKVHSLCRN 306 (310)
Q Consensus 263 ~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~la~~~~~~~~ 306 (310)
+.....|+.+.+....+.......+.-.-.....++.++++-||
T Consensus 532 LGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred HHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 44445677777666666555422111111222344555555554
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=43.18 E-value=58 Score=30.69 Aligned_cols=79 Identities=11% Similarity=0.059 Sum_probs=49.8
Q ss_pred HHhhcCCCChHHHHHHhc-------CCCCc-chhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCC-CChHHHHHH---
Q 021611 230 YNMFKGGGDPEKLVAAFS-------SGREN-EYFYASLYAGLFYESQKKADAAKLHILAACESPYGQ-RSDDYMAAL--- 297 (310)
Q Consensus 230 ~~l~~~~~~~e~al~~~~-------~~~~~-d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~-~s~~~~~~l--- 297 (310)
..++...|++.++++.+. ...++ -....+..-..+|..+|++.++...|.+|....... ..+..+..+
T Consensus 106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~ 185 (394)
T 3txn_A 106 IALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQ 185 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Confidence 345556778877755543 11111 123344456668899999999999999998743211 223344433
Q ss_pred -HHHhh-cccCCc
Q 021611 298 -AKVHS-LCRNWS 308 (310)
Q Consensus 298 -a~~~~-~~~~~~ 308 (310)
|.+|+ ..|+|.
T Consensus 186 ~Gi~~l~~~rdyk 198 (394)
T 3txn_A 186 SGILHAADERDFK 198 (394)
T ss_dssp HHHHHHHTTSCHH
T ss_pred hhHHHHHhccCHH
Confidence 89999 899985
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.74 E-value=5.9 Score=37.62 Aligned_cols=95 Identities=12% Similarity=0.012 Sum_probs=68.2
Q ss_pred HHHHHHhhhhheeccccccchhhhhhccccCcc---hhhHHHhhccchhhhhhhhhhhhhhhhhhccCC--CCCccc--e
Q 021611 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR---QKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNP--NDTEES--I 196 (310)
Q Consensus 124 ~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~---~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P--~d~~~~--~ 196 (310)
..++..+|..+...|++++|++.|.++...-.. -...++..-.+....++|..+.....++-.+-. .|+... +
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 357789999999999999999999998775432 256777777888889999999999999866532 233211 1
Q ss_pred e--eeehhhhhcChHHHHHhHHHh
Q 021611 197 W--CFLCEAQLYGVDEARNRFLEV 218 (310)
Q Consensus 197 ~--~~l~~a~l~~~~eA~~~l~~~ 218 (310)
. .++.....+++.+|...|.++
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHH
Confidence 1 112222457789998887764
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.78 E-value=7.6 Score=36.85 Aligned_cols=77 Identities=9% Similarity=-0.096 Sum_probs=37.9
Q ss_pred hhcCCCChHHHHHHhcC-----CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhcCCCCCCChHHHHHH----HHHhh
Q 021611 232 MFKGGGDPEKLVAAFSS-----GRENEYFYASLYAGLFYESQKKADAAKLHILAACESPYGQRSDDYMAAL----AKVHS 302 (310)
Q Consensus 232 l~~~~~~~e~al~~~~~-----~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~~~~~~l----a~~~~ 302 (310)
++...|+.++|.+.+.. ..........+..-.++...|++..+..++.++........+.+....+ |.+|+
T Consensus 140 ~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l 219 (429)
T 4b4t_R 140 YYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCL 219 (429)
T ss_dssp HHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGG
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHH
Confidence 34445666666555531 1112223333333345556677777777777776533222233333222 66666
Q ss_pred cccCCc
Q 021611 303 LCRNWS 308 (310)
Q Consensus 303 ~~~~~~ 308 (310)
..|+|.
T Consensus 220 ~~r~f~ 225 (429)
T 4b4t_R 220 AVRNFK 225 (429)
T ss_dssp GTSCHH
T ss_pred HhChHH
Confidence 666653
No 256
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.64 E-value=5.5 Score=39.00 Aligned_cols=65 Identities=9% Similarity=-0.008 Sum_probs=57.6
Q ss_pred ccchhhhhhhhcCCCCchhHHHHHHHhhhhheeccccccchhhhhhccccCcchhhHHHhhccchhh
Q 021611 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYY 170 (310)
Q Consensus 104 ~~~a~~~~~~ai~~~~~P~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~ 170 (310)
...|...|.+|+. ++|++-..|.++|.+....|+.-+|+=.|-|++.-..-++.+.-++...+-+
T Consensus 168 ~~~A~~~Y~~A~~--~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 168 TSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 3567788889998 9999999999999999999999999999999999888789998888776544
No 257
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=39.06 E-value=11 Score=27.01 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=26.5
Q ss_pred HhhccchhhhhhhhhhhhhhhhhhccCCC
Q 021611 162 WQRGLSLYYLDRFEEGAEQFRIDVAQNPN 190 (310)
Q Consensus 162 ~~~G~a~~~lg~~~eA~~~f~~Al~l~P~ 190 (310)
..+|..+...|++++|+.+|-+|+..-|+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 36899999999999999999999999885
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=37.53 E-value=14 Score=37.13 Aligned_cols=55 Identities=15% Similarity=0.057 Sum_probs=45.8
Q ss_pred hhhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 131 G~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
+.+ ++.|++++|..+|++.-.-.+......|-+|.++..+|+-++|...|+++.+
T Consensus 293 r~A-lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 293 RMA-LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHH-HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHH-HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 444 4679999999999887664445577778899999999999999999999875
No 259
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=35.58 E-value=14 Score=27.94 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=19.7
Q ss_pred HHhhccchhhhhhhhhhhhhhhhhhc
Q 021611 161 LWQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 161 ~~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
+-.++..+.+.|+|++||++.++|..
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33477788888888888888887763
No 260
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.31 E-value=18 Score=38.06 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=27.1
Q ss_pred hhheeccccccchhhhhhccccCcchhhHHHhhccchhhhhhhhhhhhhhhhh
Q 021611 132 MLLFRQGDVVGSVAEFDKAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRID 184 (310)
Q Consensus 132 ~~~~~~g~~~eAl~~f~kAl~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~A 184 (310)
..+...|.++-| ..+..-+.-+|- .-|-+|.++...|++++|.++|++|
T Consensus 818 ~~L~~~~~~~~a-~eL~~~~~~t~~---~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 818 EKLFLFKQYNAC-MQLIGWLNSDPI---AVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHTTCHHHH-HHHGGGCCSSHH---HHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHhcHHHHH-HHHHhhcCCChH---HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444544433 345566665553 2255666666666666666666665
No 261
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=33.35 E-value=9.6 Score=39.30 Aligned_cols=52 Identities=12% Similarity=0.010 Sum_probs=40.7
Q ss_pred hhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeeh--hhhhcChHHHHHhHH
Q 021611 163 QRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFL 216 (310)
Q Consensus 163 ~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~--~a~l~~~~eA~~~l~ 216 (310)
-.+..+...|+|+-|++.-++|+...|.+-.. |..|+ ...+|+++.|+-.+-
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~t--W~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELALDSFES--WYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH--HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCchhhHH--HHHHHHHHHHhccHHHHHHHHh
Confidence 34555667799999999999999999987764 55554 458999999987543
No 262
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=32.26 E-value=22 Score=30.27 Aligned_cols=32 Identities=16% Similarity=-0.003 Sum_probs=28.0
Q ss_pred chhHhhhhhhhhhhhccchhhHHHHHHHhhcC
Q 021611 253 EYFYASLYAGLFYESQKKADAAKLHILAACES 284 (310)
Q Consensus 253 d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~~ 284 (310)
+...-+||+|.++..++++.+|..++..|.+.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 43 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEH 43 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34455789999999999999999999999983
No 263
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=32.03 E-value=18 Score=30.76 Aligned_cols=38 Identities=13% Similarity=-0.023 Sum_probs=28.4
Q ss_pred HHHHHHHhhhhheeccccccchhhhhhccccCcchhhH
Q 021611 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKAY 160 (310)
Q Consensus 123 ~~~a~~~rG~~~~~~g~~~eAl~~f~kAl~l~P~~~~a 160 (310)
-..-.|.+|..++..++|.+|.++|..|++.-|.....
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~ 50 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQK 50 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHH
Confidence 34667778888888888888888888888887765433
No 264
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.40 E-value=14 Score=27.90 Aligned_cols=30 Identities=23% Similarity=0.163 Sum_probs=24.0
Q ss_pred hHHHHHHHhhhhheeccccccchhhhhhcc
Q 021611 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAI 151 (310)
Q Consensus 122 ~~~~a~~~rG~~~~~~g~~~eAl~~f~kAl 151 (310)
+.+-.+-.++..++..|+|++||+...+|.
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 456677788999999999999998766543
No 265
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=31.28 E-value=1.4e+02 Score=24.57 Aligned_cols=76 Identities=11% Similarity=0.014 Sum_probs=45.9
Q ss_pred ChHHHHHhHHHhcCCChhhHHHHHHhhcCCCChHHHHHHhcC--CCCcchhHhhhhhhhhhhhccchhhHHHHHHHhhc
Q 021611 207 GVDEARNRFLEVGRDPRPVMREAYNMFKGGGDPEKLVAAFSS--GRENEYFYASLYAGLFYESQKKADAAKLHILAACE 283 (310)
Q Consensus 207 ~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~e~al~~~~~--~~~~d~~~a~~~lG~~~~~~G~~d~A~~~~~kAl~ 283 (310)
+...-..++.+.+.+...+ ..+...+..+|+.++....... ..++......+-++..|...|+..+|.+.+++|++
T Consensus 76 NlKrVi~C~~~~n~~se~v-d~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 76 NLKSVVECGVINNTLNEHV-NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp CTHHHHHHHHHTTCCCHHH-HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcchHHHH-HHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3444445555555444332 3444445556666655444432 11222233455699999999999999999999999
No 266
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.80 E-value=81 Score=33.04 Aligned_cols=128 Identities=9% Similarity=-0.080 Sum_probs=68.5
Q ss_pred hccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCCChhhHHHHHHhhcCCCCh-HHH
Q 021611 164 RGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRDPRPVMREAYNMFKGGGDP-EKL 242 (310)
Q Consensus 164 ~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d~~~~~~~a~~l~~~~~~~-e~a 242 (310)
....+...|.++-|.+ .+..-|.++-..+..+.+....|++++|...|.++....... ...... +..
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~--------~~~~~~~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSH--------TSQFAVLREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSS--------CCSCGGGHHH
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccC--------cccccchhhh
Confidence 4455666777776544 334444444333445555668899999999999864311000 000000 111
Q ss_pred HHHhcCCCCcchhHhhhh--hhhhhhhccchhhHHHHHHHhhcCCCCCCCh----HHHHHHHHHhhccc
Q 021611 243 VAAFSSGRENEYFYASLY--AGLFYESQKKADAAKLHILAACESPYGQRSD----DYMAALAKVHSLCR 305 (310)
Q Consensus 243 l~~~~~~~~~d~~~a~~~--lG~~~~~~G~~d~A~~~~~kAl~~~~~~~s~----~~~~~la~~~~~~~ 305 (310)
...+.. .+.+.....|| ...+++..|-++.+++.-+.||+.-. ..++ +.+..+=+++++.|
T Consensus 884 ~~ll~~-~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEK-YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHH-TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCc-ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 111110 11122222333 67799999999999999999997321 2222 24445555555544
No 267
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.48 E-value=6.5 Score=29.82 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=20.8
Q ss_pred HHhhhhheeccccccchhhhhhccccCcc
Q 021611 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (310)
Q Consensus 128 ~~rG~~~~~~g~~~eAl~~f~kAl~l~P~ 156 (310)
+.+|..++..|++++|+.+|-+||..-|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45677777777777777777777776654
No 268
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=26.72 E-value=15 Score=26.86 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=8.1
Q ss_pred hhhhhhhhhhhhccCCC
Q 021611 174 FEEGAEQFRIDVAQNPN 190 (310)
Q Consensus 174 ~~eA~~~f~~Al~l~P~ 190 (310)
|.+|++.|..+++..|+
T Consensus 42 Y~~aie~l~~alk~e~d 58 (83)
T 2w2u_A 42 YKKAIEVLAQLVSLYRD 58 (83)
T ss_dssp HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 33444444445555554
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=25.97 E-value=35 Score=26.40 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=42.7
Q ss_pred cccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcCC
Q 021611 151 IELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGRD 221 (310)
Q Consensus 151 l~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~d 221 (310)
++..|+...+-.-|-..+...|+|++|....+..- - |....|..+|.-++|-..++...+.++...
T Consensus 33 L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~---pdlepw~ALce~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 33 LHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA--Y---PDLEPWLALCEYRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC--C---GGGHHHHHHHHHHHTCHHHHHHHHHHHTTC
T ss_pred HHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC--C---chHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 44445543444456667777888888887765544 2 333357788888888877777777665443
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=24.07 E-value=34 Score=26.41 Aligned_cols=65 Identities=22% Similarity=0.129 Sum_probs=41.4
Q ss_pred cccCcchhhHHHhhccchhhhhhhhhhhhhhhhhhccCCCCCccceeeeehhhhhcChHHHHHhHHHhcC
Q 021611 151 IELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEVGR 220 (310)
Q Consensus 151 l~l~P~~~~a~~~~G~a~~~lg~~~eA~~~f~~Al~l~P~d~~~~~~~~l~~a~l~~~~eA~~~l~~~~~ 220 (310)
++..|+...+-.-|-..+...|+|++|....+..- - |....|..+|.-++|-.+++...+.++..
T Consensus 32 L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~---pdlepw~ALce~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 32 LERLGQDEAARLIRISSLANQGRYQEALAFAHGNP--W---PALEPWFALCEWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC--C---GGGHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC--C---chHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 44445533444456667777888888887755443 2 33335777888788887777777755444
No 271
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=23.39 E-value=48 Score=24.92 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=24.8
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHhhcCCCC
Q 021611 257 ASLYAGLFYESQKKADAAKLHILAACESPYG 287 (310)
Q Consensus 257 a~~~lG~~~~~~G~~d~A~~~~~kAl~~~~~ 287 (310)
-...+|..+..+|+++.|..||-+|+. -++
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~-Vc~ 51 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIA-VCG 51 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH-HHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-HcC
Confidence 344589999999999999999999998 344
No 272
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=23.06 E-value=19 Score=26.14 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=10.1
Q ss_pred hhhhhhhhhhhhhccCCCC
Q 021611 173 RFEEGAEQFRIDVAQNPND 191 (310)
Q Consensus 173 ~~~eA~~~f~~Al~l~P~d 191 (310)
-|.+|++.|..+++..|+.
T Consensus 33 lY~~aie~l~~~lk~e~d~ 51 (83)
T 2v6y_A 33 YYKKAIEVLSQIIVLYPES 51 (83)
T ss_dssp HHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHCCCH
Confidence 3445555555555556544
No 273
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=21.87 E-value=31 Score=25.28 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=15.2
Q ss_pred Hhhccchhhhhhhhhhhhhhhhhhc
Q 021611 162 WQRGLSLYYLDRFEEGAEQFRIDVA 186 (310)
Q Consensus 162 ~~~G~a~~~lg~~~eA~~~f~~Al~ 186 (310)
..++.-.-..|+|++|+..|..+++
T Consensus 20 v~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 20 LKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555556677777766666654
Done!