BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021612
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 159/310 (51%), Gaps = 42/310 (13%)
Query: 2 ILIREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKA 61
I+ +E R AG F+ Y + + L TW + RFP+PK L +LH K
Sbjct: 198 IMQKEGFRVAGVFLDIHY---MDSYKLFTWHPY--------RFPEPKKLIDELHKRNVKL 246
Query: 62 IWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 121
I ++D GI+ + Y + SG + + + G F+G++WPG V+PD+ + R WW
Sbjct: 247 ITIVDHGIRVDQNYSPFLSG--MGKFCEIESGELFVGKMWPGTTVYPDFFREDTREWWAG 304
Query: 122 LVKDFIYNGVDGIWNDMNEPAVF------KSVTKTMPESNIHRGDDEI------------ 163
L+ +++ GVDGIW DMNEP F + V ++P + DD +
Sbjct: 305 LISEWLSQGVDGIWLDMNEPTDFSRAIEIRDVLSSLP---VQFRDDRLVTTFPDNVVHYL 361
Query: 164 -GGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSN 222
G H N Y + A +T++G + + +++ F+L+RAG+ G QRYA WTGDN +
Sbjct: 362 RGKRVKHEKVRNAYPLYEAMATFKGFRTSHRNE-IFILSRAGYAGIQRYAFIWTGDNTPS 420
Query: 223 WEHLHMSISMVLQLGLSGQPFSGPDIGGFDG------NATPRLFGRWMGIGAMFPFCRGH 276
W+ L + + +VL L +SG PF G DIGGF G + + L ++ + FPF R H
Sbjct: 421 WDDLKLQLQLVLGLSISGVPFVGCDIGGFQGRNFAEIDNSMDLLVKYYALALFFPFYRSH 480
Query: 277 TESDAIDHEP 286
+D ID EP
Sbjct: 481 KATDGIDTEP 490
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 143/291 (49%), Gaps = 29/291 (9%)
Query: 33 DFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDG----YFVYDSGSKIDVWI 88
DF + FP+ +LH NG K + ++DP I + Y YD GS + +W+
Sbjct: 336 DFTYDSVDFKGFPE---FVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWV 392
Query: 89 QKADG-TPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGV--DGIWNDMNEPAVFK 145
+DG TP IGEVWPG VFPDYT WW + F +N V DGIW DMNE + F
Sbjct: 393 NSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWWTKEFELF-HNQVEFDGIWIDMNEVSNFV 451
Query: 146 SVTKTMPESN-------IHRGDDEIGGCQNHSY-----------YHNVYGMLMARSTYEG 187
+ + +N R D C+ HN+YG MA +T E
Sbjct: 452 DGSVSGCSTNNLNNPPFTPRILDGYLFCKTLCMDAVQHWGKQYDIHNLYGYSMAVATAEA 511
Query: 188 MKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPD 247
K +KR F+LTR+ F GS ++AA W GDN + W+ L SI VL+ L G P GPD
Sbjct: 512 AKTVFPNKRSFILTRSTFAGSGKFAAHWLGDNTATWDDLRWSIPGVLEFNLFGIPMVGPD 571
Query: 248 IGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSS 298
I GF + L RWM +GA +PF R H D +P SFG + L +S
Sbjct: 572 ICGFALDTPEELCRRWMQLGAFYPFSRNHNGQGYKDQDPASFGADSLLLNS 622
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 141/291 (48%), Gaps = 29/291 (9%)
Query: 33 DFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDG----YFVYDSGSKIDVWI 88
DF + FP+ +LH NG K + ++DP I + Y YD GS + +W+
Sbjct: 336 DFTYDSVDFKGFPE---FVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWV 392
Query: 89 QKADG-TPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGV--DGIWNDMNEPAVFK 145
+DG TP IGEVWPG VFPDYT WW + F +N V DGIW DMNE + F
Sbjct: 393 NSSDGVTPLIGEVWPGQTVFPDYTNPNCAVWWTKEFELF-HNQVEFDGIWIDMNEVSNFV 451
Query: 146 SVTKTMPESNIHRGD------------------DEIGGCQNHSYYHNVYGMLMARSTYEG 187
+ + +N D + HN+YG MA +T E
Sbjct: 452 DGSVSGCSTNNLNNPPFTPRILDGYLFCKTLCMDAVQHWGKQYDIHNLYGYSMAVATAEA 511
Query: 188 MKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPD 247
K +KR F+LTR+ F GS ++AA W GDN + W+ L SI VL+ L G P GPD
Sbjct: 512 AKTVFPNKRSFILTRSTFAGSGKFAAHWLGDNTATWDDLRWSIPGVLEFNLFGIPMVGPD 571
Query: 248 IGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSS 298
I GF + L RWM +GA +PF R H D +P SFG + L +S
Sbjct: 572 ICGFALDTPEELCRRWMQLGAFYPFSRNHNGQGYKDQDPASFGADSLLLNS 622
>pdb|3LPO|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPP|A Chain A, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|B Chain B, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|C Chain C, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|D Chain D, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
Length = 898
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 140/278 (50%), Gaps = 31/278 (11%)
Query: 49 SLAADLHLNGFKAIWMLDPGI---KHEDG--YFVYDSGSKIDVWIQKADG-TPFIGEVWP 102
DLH +G K + +LDP I + +G Y Y+ G+ VWI ++DG TP IGEVWP
Sbjct: 377 QFVQDLHDHGQKYVIILDPAISIGRRANGTTYATYERGNTQHVWINESDGSTPIIGEVWP 436
Query: 103 GPCVFPDYTQSKVRSWWGSLVKDFIYN-GVDGIWNDMNEPAVFKSVTKTMPESNIHRGD- 160
G V+PD+T WW + F DG+W DMNE + F + + N+++ +
Sbjct: 437 GLTVYPDFTNPNCIDWWANECSIFHQEVQYDGLWIDMNEVSSF--IQGSTKGCNVNKLNY 494
Query: 161 -------------------DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLT 201
D + H++YG MA +T + ++ +KR F+LT
Sbjct: 495 PPFTPDILDKLMYSKTICMDAVQNWGKQYDVHSLYGYSMAIATEQAVQKVFPNKRSFILT 554
Query: 202 RAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFG 261
R+ F GS R+AA W GDN ++WE + SI+ +L+ L G P G DI GF T L
Sbjct: 555 RSTFAGSGRHAAHWLGDNTASWEQMEWSITGMLEFSLFGIPLVGADICGFVAETTEELCR 614
Query: 262 RWMGIGAMFPFCRGHTESDAIDHE-PWSFGEEVLFCSS 298
RWM +GA +PF R H SD +H+ P FG+ L S
Sbjct: 615 RWMQLGAFYPFSRNH-NSDGYEHQDPAFFGQNSLLVKS 651
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 153 bits (387), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 20 PVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYD 79
P+ + + DF + FPD ++ + I ++D G+K E GY VY+
Sbjct: 193 PIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYE 252
Query: 80 SGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 139
G K + + ++ DG+ F+ VWPG FPD + R W+G + I G++G WNDMN
Sbjct: 253 EGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLIDQGIEGFWNDMN 312
Query: 140 EPAVFKSVTKTMP------------ESNIH------RGDDEIGGCQN------------- 168
EPA+F S E IH + D + ++
Sbjct: 313 EPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKI 372
Query: 169 -HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLH 227
H HN++G M R+ E + D +KR + +R+ +IG RY W GDN S W H+
Sbjct: 373 RHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHIL 432
Query: 228 MSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPW 287
+++ M+ L + G ++G D+GGF + T L R++ +G P R H + E +
Sbjct: 433 LNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECY 492
Query: 288 SF 289
F
Sbjct: 493 QF 494
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 153 bits (387), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 20 PVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYD 79
P+ + + DF + FPD ++ + I ++D G+K E GY VY+
Sbjct: 193 PIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYE 252
Query: 80 SGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 139
G K + + ++ DG+ F+ VWPG FPD + R W+G + I G++G WNDMN
Sbjct: 253 EGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLIDQGIEGFWNDMN 312
Query: 140 EPAVFKSVTKTMP------------ESNIH------RGDDEIGGCQN------------- 168
EPA+F S E IH + D + ++
Sbjct: 313 EPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKI 372
Query: 169 -HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLH 227
H HN++G M R+ E + D +KR + +R+ +IG RY W GDN S W H+
Sbjct: 373 RHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHIL 432
Query: 228 MSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPW 287
+++ M+ L + G ++G D+GGF + T L R++ +G P R H + E +
Sbjct: 433 LNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECY 492
Query: 288 SF 289
F
Sbjct: 493 QF 494
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 137/302 (45%), Gaps = 32/302 (10%)
Query: 20 PVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYD 79
P+ + + DF + FPD ++ + I ++D G+K E GY VY+
Sbjct: 193 PIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYE 252
Query: 80 SGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 139
G K + + ++ DG+ F+ VWPG FPD + R W+G + I G++G WNDMN
Sbjct: 253 EGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLIDQGIEGFWNDMN 312
Query: 140 EPAVFKSVTKTMP------------ESNIH------RGDDEIGGCQN------------- 168
EPA+F S E IH + D + ++
Sbjct: 313 EPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKI 372
Query: 169 -HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLH 227
H HN++G M R+ E + D +KR + +R+ +IG RY W GDN S W H+
Sbjct: 373 RHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHIL 432
Query: 228 MSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPW 287
+++ M+ L + G ++G D+GGF + T L R++ +G P R H + E +
Sbjct: 433 LNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECY 492
Query: 288 SF 289
F
Sbjct: 493 QF 494
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 150 bits (379), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 136/302 (45%), Gaps = 32/302 (10%)
Query: 20 PVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYD 79
P+ + + DF + FPD ++ + I ++D G+K E GY VY+
Sbjct: 193 PIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYE 252
Query: 80 SGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 139
G K + + ++ DG+ F+ VWPG FPD + R W+G + I G++G WNDMN
Sbjct: 253 EGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLIDQGIEGFWNDMN 312
Query: 140 EPAVFKSVTKTMP------------ESNIH------RGDDEIGGCQN------------- 168
EPA+F S E IH + D + ++
Sbjct: 313 EPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKI 372
Query: 169 -HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLH 227
H HN++G M R+ E + D +KR + +R+ +IG RY W G N S W H+
Sbjct: 373 RHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGANKSWWSHIL 432
Query: 228 MSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPW 287
+++ M+ L + G ++G D+GGF + T L R++ +G P R H + E +
Sbjct: 433 LNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECY 492
Query: 288 SF 289
F
Sbjct: 493 QF 494
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 150 bits (379), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 136/302 (45%), Gaps = 32/302 (10%)
Query: 20 PVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYD 79
P+ + + DF + FPD ++ + I ++D G+K E GY VY+
Sbjct: 193 PIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDAGVKVEKGYEVYE 252
Query: 80 SGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 139
G K + + ++ DG+ F+ VWPG FPD + R W+G + I G++G WN MN
Sbjct: 253 EGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLIDQGIEGFWNAMN 312
Query: 140 EPAVFKSVTKTMP------------ESNIH------RGDDEIGGCQN------------- 168
EPA+F S E IH + D + ++
Sbjct: 313 EPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDYKRFYHNVNGKKI 372
Query: 169 -HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLH 227
H HN++G M R+ E + D +KR + +R+ +IG RY W GDN S W H+
Sbjct: 373 RHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIWMGDNKSWWSHIL 432
Query: 228 MSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPW 287
+++ M+ L + G ++G D+GGF + T L R++ +G P R H + E +
Sbjct: 433 LNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRDHAAEGTREQECY 492
Query: 288 SF 289
F
Sbjct: 493 QF 494
>pdb|3N04|A Chain A, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
pdb|3N04|B Chain B, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 127/290 (43%), Gaps = 32/290 (11%)
Query: 32 MDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKA 91
DF + FPD + + I ++D G+K E GY VY+ G K + + ++
Sbjct: 205 QDFKDFTVNEKNFPDFPEFVKEXKDQELRLIPIIDAGVKVEKGYEVYEEGVKNNYFCKRE 264
Query: 92 DGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTM 151
DG+ F+ VWPG FPD + R W+G + I G++G WND NEPA+F S
Sbjct: 265 DGSDFVAAVWPGDTHFPDXLNPEARKWFGDKYRFLIDQGIEGFWNDXNEPAIFYSSEGLA 324
Query: 152 P------------ESNIH------RGDDEIGGCQN--------------HSYYHNVYGML 179
E IH + D + ++ H HN++G
Sbjct: 325 EAKEFAGEFAKDTEGKIHPWAXQAKXKDIVNSPEDYKRFYHNVNGKKIRHDKVHNLFGYN 384
Query: 180 MARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLS 239
R+ E + D +KR +R+ +IG RY W GDN S W H+ +++ + L
Sbjct: 385 XTRAAGEAFERIDPEKRFLXFSRSSYIGXHRYGGIWXGDNKSWWSHILLNLKXLPSLNXC 444
Query: 240 GQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSF 289
G ++G D+GGF + T L R++ +G P R H + E + F
Sbjct: 445 GFXYTGADLGGFGDDTTRDLLLRFLALGVFTPLXRDHAAEGTREQECYQF 494
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 135/328 (41%), Gaps = 63/328 (19%)
Query: 32 MDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDG--YFVYDSGSKIDVWIQ 89
+DF +S +F +L + +G + I +LDP I + Y + G + DV+I+
Sbjct: 336 LDFTLS----PKFAGFPALINRMKADGMRVILILDPAISGNETQPYPAFTRGVEDDVFIK 391
Query: 90 -KADGTPFIGEVWP---------------------GPCVFPDYTQSKVRSWWGSLVKDFI 127
DG G+VWP FPD+ ++ WW +++
Sbjct: 392 YPNDGDIVWGKVWPDFPDVVVNGSLDWDSQVELYRAYVAFPDFFRNSTAKWWKREIEELY 451
Query: 128 YN--------GVDGIWNDMNEPAVF-----------------------KSVTKTMPESNI 156
N DG+W DMNEP+ F +S + + +
Sbjct: 452 NNPQNPERSLKFDGMWIDMNEPSSFVNGAVSPGCRDASLNHPPYMPHLESRDRGLSSKTL 511
Query: 157 HRGDDEI---GGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA 213
+I G H HN+YG R TYE ++ +R V+TR+ F S R+A
Sbjct: 512 CMESQQILPDGSLVQHYNVHNLYGWSQTRPTYEAVQEV-TGQRGVVITRSTFPSSGRWAG 570
Query: 214 TWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFC 273
W GDN + W+ L SI +++ L G ++G DI GF +A + RWM +GA +PF
Sbjct: 571 HWLGDNTAAWDQLKKSIIGMMEFSLFGISYTGADICGFFQDAEYEMCVRWMQLGAFYPFS 630
Query: 274 RGHTESDAIDHEPWSFGEEVLFCSSIVI 301
R H +P S+ + S V+
Sbjct: 631 RNHNTIGTRRQDPVSWDVAFVNISRTVL 658
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 107/256 (41%), Gaps = 20/256 (7%)
Query: 41 RHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEV 100
+ FP P + AD G K + + +P + +D K + G P E+
Sbjct: 318 KENFPTPLDMMADFKQQGVKTVLITEPFVLTSSKR--WDDAVKAKALAKDPQGQPKAFEL 375
Query: 101 WPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGD 160
+ G D + W+ S+ KD GV G W D+ EP + PE H
Sbjct: 376 YFGNGGIIDVFSKEGSRWFSSIYKDLSKQGVAGWWGDLGEPEMH-------PEDTQH--- 425
Query: 161 DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAAT-WTGDN 219
IG HN YG A Y+ + RPF++ RAGF+GSQRY WTGD
Sbjct: 426 -AIGDADT---VHNAYGHRWAEMLYQQQLDQFPELRPFIMMRAGFVGSQRYGMIPWTGDV 481
Query: 220 VSNWEHLHMSISMVLQLGLSGQPFSGPDIGGF-DGNATPR-LFGRWMGIGAMFPFCRGHT 277
W L + + LQ+ L G + D+GGF DG + ++ RW+ G P R H
Sbjct: 482 SRTWGGLASQVELALQMSLLGFGYIHSDLGGFADGETLDKEMYIRWLQYGVFQPVYRPHG 541
Query: 278 ESDAIDHEPWSFGEEV 293
+ D I EP EE
Sbjct: 542 Q-DHIPSEPVFQDEET 556
>pdb|2X2H|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2I|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2J|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
Length = 1027
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 87/211 (41%), Gaps = 39/211 (18%)
Query: 105 CVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFK----SVTKTMPESNIHRGD 160
+FPD+ + V WWG+ K G+D +W DM PA+ P+ N D
Sbjct: 510 ALFPDWGRPDVAEWWGNNYKKLFSIGLDFVWQDMTVPAMMPHKIGDDINVKPDGNWPNAD 569
Query: 161 DEIGGCQNHSYYH----------------------NVYGMLMARST-----YEGMKLADK 193
D G N YH N++ + ST E K
Sbjct: 570 DPSNGQYNWKTYHPQVLVTDMRYENHGREPMVTQRNIHAYTLCESTRKEGIVENADTLTK 629
Query: 194 DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGF-- 251
+R ++++R G+IG+Q + W GDN + ++ M I+ + + +S P G DIGGF
Sbjct: 630 FRRSYIISRGGYIGNQHFGGMWVGDNSTTSNYIQMMIANNINMNMSCLPLVGSDIGGFTS 689
Query: 252 ---DGNATP---RLFGRWMGIGAMFPFCRGH 276
+ TP L R++ G + P+ R H
Sbjct: 690 YDNENQRTPCTGDLMVRYVQAGCLLPWFRNH 720
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 33/278 (11%)
Query: 31 WMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQK 90
W DF LT FPDP+ + L G K ++P I + V+ + +++
Sbjct: 315 WCDFEWDPLT---FPDPEGMIRRLKAKGLKICVWINPYIGQKSP--VFKELQEKGYLLKR 369
Query: 91 ADGTPFIGEVW-PGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE--PAVFKSV 147
DG+ + + W PG ++ D+T W+ +K + GVD D E P +
Sbjct: 370 PDGSLWQWDKWQPGLAIY-DFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWF 428
Query: 148 TKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIG 207
+ P+ + H++Y +Y L+ + +K ++ + R+ +G
Sbjct: 429 DGSDPQ-------------KMHNHYAYIYNELV----WNVLKDTVGEEEAVLFARSASVG 471
Query: 208 SQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIG 267
+Q++ W GD +N+E + S+ L +GLSG F DIGGF+ A ++ RW G
Sbjct: 472 AQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFG 531
Query: 268 AMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 305
+ R H PW++ +E S ++ FF
Sbjct: 532 LLSSHSRLHGSKSY--RVPWAYDDE-----SCDVVRFF 562
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 33/278 (11%)
Query: 31 WMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQK 90
W DF LT FPDP+ + L G K ++P I + V+ + +++
Sbjct: 315 WCDFEWDPLT---FPDPEGMIRRLKAKGLKICVWINPYIGQKSP--VFKELQEKGYLLKR 369
Query: 91 ADGTPFIGEVW-PGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE--PAVFKSV 147
DG+ + + W PG ++ D+T W+ +K + GVD D E P +
Sbjct: 370 PDGSLWQWDKWQPGLAIY-DFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWF 428
Query: 148 TKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIG 207
+ P+ + H++Y +Y L+ + +K ++ + R+ +G
Sbjct: 429 DGSDPQ-------------KMHNHYAYIYNELV----WNVLKDTVGEEEAVLFARSASVG 471
Query: 208 SQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIG 267
+Q++ W GD +N+E + S+ L +GLSG F DIGGF+ A ++ RW G
Sbjct: 472 AQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFG 531
Query: 268 AMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 305
+ R H PW++ +E S ++ FF
Sbjct: 532 LLSSHSRLHGSKSY--RVPWAYDDE-----SCDVVRFF 562
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 117/278 (42%), Gaps = 33/278 (11%)
Query: 31 WMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQK 90
W DF LT FPDP+ L G K ++P I + V+ + +++
Sbjct: 315 WCDFEWDPLT---FPDPEGXIRRLKAKGLKICVWINPYIGQKSP--VFKELQEKGYLLKR 369
Query: 91 ADGTPFIGEVW-PGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE--PAVFKSV 147
DG+ + + W PG ++ D+T W+ +K + GVD D E P +
Sbjct: 370 PDGSLWQWDKWQPGLAIY-DFTNPDACKWYADKLKGLVAXGVDCFKTDFGERIPTDVQWF 428
Query: 148 TKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIG 207
+ P+ + H++Y +Y L+ + +K ++ + R+ +G
Sbjct: 429 DGSDPQ-------------KXHNHYAYIYNELV----WNVLKDTVGEEEAVLFARSASVG 471
Query: 208 SQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIG 267
+Q++ W GD +N+E S+ L +GLSG F DIGGF+ A ++ RW G
Sbjct: 472 AQKFPVHWGGDCYANYESXAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFG 531
Query: 268 AMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 305
+ R H PW++ +E S ++ FF
Sbjct: 532 LLSSHSRLHGSKSY--RVPWAYDDE-----SCDVVRFF 562
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 73/190 (38%), Gaps = 37/190 (19%)
Query: 118 WWGSLVKDFIYNGVDGIWNDMNEPAVFKSVT----KTMPESNIHRGDDEIGGCQNHSYYH 173
+W + +G D W D EP + ++T K + N EI
Sbjct: 563 FWKQIRDKINVHGFDAWWLDAVEPDIHSNLTFEKRKWLMTPNARGNGAEI---------F 613
Query: 174 NVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRY-AATWTGDNVSNWEHLHMSISM 232
N Y + A Y+G D DKR F+LTR+GF G QR +A W+GD VS W + I+
Sbjct: 614 NAYAVPHAEGVYQGELATDGDKRSFILTRSGFGGIQRTGSAIWSGDIVSRWSDMKDQIAA 673
Query: 233 VLQLGLSGQPFSGPDIGGFDGNATPR-----------------------LFGRWMGIGAM 269
+ L+G DIGGF R L RW GA
Sbjct: 674 GIGTNLAGVTNWTFDIGGFTPEDRFRHGKKGFVGSWTALDAEQVDEWQELNTRWYQFGAF 733
Query: 270 FPFCRGHTES 279
P R H ++
Sbjct: 734 VPLYRSHGQN 743
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 83 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEP 141
+++ W+ AD + +GE+W GP +P++ S W ++KD W+D +
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKD---------WSDRAKC 251
Query: 142 AVFKSVTK 149
VF K
Sbjct: 252 PVFDFALK 259
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 83 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 126
+++ W+ AD + +GE+W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKDW 245
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 83 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 126
+++ W+ AD + +GE+W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKDW 245
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 83 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 126
+++ W+ AD + +GE+W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKDW 245
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 83 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEP 141
+++ W+ AD + +GE+W GP +P++ S W ++KD W+D +
Sbjct: 202 RVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTAS-WQQIIKD---------WSDRAKC 251
Query: 142 AVFKSVTK 149
VF K
Sbjct: 252 PVFDFALK 259
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Query: 43 RFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVW--IQKADGTPFIGEV 100
+ P SL + L A + P + Y Y +G W +Q +P I +
Sbjct: 98 KLASPVSLTDKIQLGCLPAAGTILP-----NNYVCYVTG-----WGRLQTNGASPDI--L 145
Query: 101 WPGPCVFPDYTQSKVRSWWGSLVK-DFIYNGVDGIWNDMN 139
G + DY WWGS VK + I G DGI + N
Sbjct: 146 QQGQLLVVDYATCSKPGWWGSTVKTNMICAGGDGIISSCN 185
>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
Length = 251
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 95 PFIGEVWPGPCVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMN 139
P E+ G DY R WWG+ VK+ + G DG+ + N
Sbjct: 152 PIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGDGVISACN 197
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 83 KIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 126
+++ W+ AD + +G++W GP +P++ S W ++KD+
Sbjct: 202 RVNSWMTDSADNSFCVGQLWKGPSEYPNWDWRNTAS-WQQIIKDW 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.142 0.479
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,921,178
Number of Sequences: 62578
Number of extensions: 498882
Number of successful extensions: 1277
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1210
Number of HSP's gapped (non-prelim): 39
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)