Query 021612
Match_columns 310
No_of_seqs 125 out of 1178
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06604 GH31_glucosidase_II_Ma 100.0 5.6E-81 1.2E-85 585.8 28.8 299 3-305 22-322 (339)
2 PLN02763 hydrolase, hydrolyzin 100.0 6.8E-81 1.5E-85 634.5 30.3 301 3-304 199-500 (978)
3 cd06603 GH31_GANC_GANAB_alpha 100.0 9.7E-80 2.1E-84 577.2 28.8 296 3-305 22-322 (339)
4 cd06600 GH31_MGAM-like This fa 100.0 3E-79 6.5E-84 568.5 27.1 277 3-305 22-300 (317)
5 cd06598 GH31_transferase_CtsZ 100.0 1.2E-77 2.5E-82 558.1 28.3 283 3-303 22-315 (317)
6 cd06602 GH31_MGAM_SI_GAA This 100.0 1.6E-76 3.4E-81 554.5 27.7 275 3-304 22-303 (339)
7 cd06593 GH31_xylosidase_YicI Y 100.0 6.9E-76 1.5E-80 545.0 27.8 280 3-304 22-305 (308)
8 cd06601 GH31_lyase_GLase GLase 100.0 2.2E-75 4.7E-80 543.2 27.5 273 3-303 22-330 (332)
9 cd06591 GH31_xylosidase_XylS X 100.0 7.7E-75 1.7E-79 539.6 28.3 282 3-297 22-318 (319)
10 KOG1066 Glucosidase II catalyt 100.0 1.9E-76 4.1E-81 567.5 16.6 294 3-304 370-669 (915)
11 cd06599 GH31_glycosidase_Aec37 100.0 7.1E-75 1.5E-79 539.4 25.4 281 3-297 27-316 (317)
12 cd06594 GH31_glucosidase_YihQ 100.0 1E-74 2.2E-79 537.6 25.9 276 3-296 21-315 (317)
13 PRK10658 putative alpha-glucos 100.0 5.7E-74 1.2E-78 574.8 27.3 282 3-304 281-565 (665)
14 COG1501 Alpha-glucosidases, fa 100.0 4.3E-73 9.4E-78 573.0 25.4 285 3-305 278-567 (772)
15 cd06597 GH31_transferase_CtsY 100.0 9.6E-73 2.1E-77 528.8 25.2 275 3-295 22-332 (340)
16 PF01055 Glyco_hydro_31: Glyco 100.0 1.6E-70 3.4E-75 532.5 24.2 295 3-305 41-338 (441)
17 PRK10426 alpha-glucosidase; Pr 100.0 1.8E-68 4E-73 533.7 27.9 278 4-302 220-518 (635)
18 cd06592 GH31_glucosidase_KIAA1 100.0 4.3E-68 9.3E-73 491.0 23.0 263 2-298 27-303 (303)
19 cd06595 GH31_xylosidase_XylS-l 100.0 1E-67 2.2E-72 486.1 22.9 256 3-297 23-291 (292)
20 cd06589 GH31 The enzymes of gl 100.0 5.6E-65 1.2E-69 462.3 23.9 239 3-298 22-265 (265)
21 KOG1065 Maltase glucoamylase a 100.0 1.7E-60 3.7E-65 470.1 20.0 291 3-303 309-602 (805)
22 cd06596 GH31_CPE1046 CPE1046 i 100.0 3.2E-43 7E-48 310.5 18.4 210 4-304 44-253 (261)
23 PF02065 Melibiase: Melibiase; 99.5 5.1E-13 1.1E-17 127.2 15.8 129 2-141 55-194 (394)
24 PLN03231 putative alpha-galact 98.9 1.4E-07 3E-12 88.6 19.2 198 2-235 15-257 (357)
25 PLN02808 alpha-galactosidase 98.7 4.5E-07 9.8E-12 86.0 15.7 163 2-235 46-225 (386)
26 PLN02692 alpha-galactosidase 98.7 2E-06 4.2E-11 82.1 19.5 164 2-236 70-250 (412)
27 PLN02229 alpha-galactosidase 98.7 1.2E-06 2.5E-11 84.0 17.5 163 2-236 77-256 (427)
28 PLN02899 alpha-galactosidase 98.7 1.9E-06 4.2E-11 85.1 18.5 193 2-234 45-287 (633)
29 COG3345 GalA Alpha-galactosida 98.1 1.3E-05 2.7E-10 77.9 8.2 126 4-140 308-444 (687)
30 COG1649 Uncharacterized protei 97.1 0.0056 1.2E-07 58.7 11.3 130 3-139 62-208 (418)
31 PF14871 GHL6: Hypothetical gl 97.0 0.0028 6.2E-08 51.5 7.5 85 47-138 46-132 (132)
32 KOG2366 Alpha-D-galactosidase 97.0 0.011 2.4E-07 55.4 12.0 192 2-269 57-281 (414)
33 PLN02355 probable galactinol-- 96.8 0.014 3.1E-07 59.5 11.4 128 3-140 218-397 (758)
34 TIGR02456 treS_nterm trehalose 96.8 0.013 2.9E-07 58.7 11.3 130 4-139 27-199 (539)
35 PRK10785 maltodextrin glucosid 96.7 0.018 4E-07 58.4 11.8 128 5-139 179-337 (598)
36 PLN02219 probable galactinol-- 96.7 0.018 4E-07 58.6 11.3 133 3-140 214-389 (775)
37 TIGR01515 branching_enzym alph 96.5 0.032 6.8E-07 56.9 12.4 97 36-139 195-297 (613)
38 PRK10933 trehalose-6-phosphate 96.5 0.043 9.4E-07 55.2 13.0 131 4-140 32-203 (551)
39 PLN02684 Probable galactinol-- 96.5 0.033 7.2E-07 56.7 11.7 127 2-140 216-388 (750)
40 PRK03705 glycogen debranching 96.5 0.014 3.1E-07 59.7 9.3 90 47-139 244-338 (658)
41 PF00128 Alpha-amylase: Alpha 96.2 0.011 2.3E-07 53.9 6.1 132 5-140 4-171 (316)
42 TIGR02104 pulA_typeI pullulana 96.1 0.029 6.2E-07 57.1 9.5 89 46-139 230-321 (605)
43 PLN00196 alpha-amylase; Provis 96.1 0.11 2.4E-06 50.5 13.2 132 5-139 44-205 (428)
44 PLN02711 Probable galactinol-- 96.1 0.079 1.7E-06 54.2 12.3 129 3-140 228-408 (777)
45 PF02638 DUF187: Glycosyl hydr 96.1 0.08 1.7E-06 49.3 11.7 130 4-138 18-162 (311)
46 PF13200 DUF4015: Putative gly 96.1 0.14 3E-06 47.8 12.7 126 5-140 13-147 (316)
47 PF05691 Raffinose_syn: Raffin 95.9 0.098 2.1E-06 53.7 11.9 130 2-140 209-391 (747)
48 TIGR02100 glgX_debranch glycog 95.8 0.052 1.1E-06 56.0 9.9 94 46-140 246-344 (688)
49 TIGR02403 trehalose_treC alpha 95.8 0.11 2.4E-06 52.1 12.1 130 4-139 26-195 (543)
50 PRK14510 putative bifunctional 95.8 0.042 9.1E-07 60.1 9.2 93 46-139 248-344 (1221)
51 COG1523 PulA Type II secretory 95.4 0.1 2.2E-06 53.6 10.1 88 48-139 268-361 (697)
52 PLN02960 alpha-amylase 94.9 0.36 7.7E-06 50.7 12.3 125 9-140 421-559 (897)
53 PRK05402 glycogen branching en 94.9 0.44 9.5E-06 49.6 13.1 95 37-139 305-406 (726)
54 PLN03244 alpha-amylase; Provis 94.9 0.093 2E-06 54.2 7.8 96 37-139 431-533 (872)
55 PRK12313 glycogen branching en 94.8 0.38 8.1E-06 49.3 12.2 120 10-140 176-312 (633)
56 PLN02447 1,4-alpha-glucan-bran 94.8 0.09 2E-06 54.4 7.5 125 9-140 255-393 (758)
57 TIGR02402 trehalose_TreZ malto 94.7 0.28 6.1E-06 49.3 10.8 121 5-139 111-246 (542)
58 TIGR02102 pullulan_Gpos pullul 94.7 0.14 3E-06 55.3 9.0 85 47-139 557-644 (1111)
59 PLN02784 alpha-amylase 94.7 0.6 1.3E-05 48.9 13.1 132 5-140 521-676 (894)
60 PLN02361 alpha-amylase 94.6 0.52 1.1E-05 45.5 12.0 129 5-139 29-181 (401)
61 PRK14706 glycogen branching en 94.4 0.54 1.2E-05 48.2 12.1 125 9-140 172-309 (639)
62 TIGR02103 pullul_strch alpha-1 93.8 0.25 5.5E-06 52.2 8.6 88 47-139 406-498 (898)
63 PRK12568 glycogen branching en 93.6 0.46 9.9E-06 49.2 9.9 98 35-139 307-410 (730)
64 TIGR01370 cysRS possible cyste 93.2 0.18 3.9E-06 47.0 5.6 84 48-141 84-171 (315)
65 PRK09441 cytoplasmic alpha-amy 92.8 0.56 1.2E-05 46.4 8.8 33 108-140 203-236 (479)
66 PRK14705 glycogen branching en 92.7 0.32 6.9E-06 53.1 7.4 99 35-140 803-907 (1224)
67 PLN02877 alpha-amylase/limit d 92.5 0.51 1.1E-05 50.2 8.5 89 47-140 468-562 (970)
68 KOG0470 1,4-alpha-glucan branc 92.5 0.33 7.3E-06 49.4 6.8 89 46-140 312-405 (757)
69 COG0366 AmyA Glycosidases [Car 92.3 0.68 1.5E-05 45.4 8.8 32 108-139 169-200 (505)
70 PRK09505 malS alpha-amylase; R 90.0 2.8 6E-05 43.4 10.7 29 112-140 435-464 (683)
71 KOG0471 Alpha-amylase [Carbohy 89.9 1.4 3E-05 44.4 8.3 106 35-140 75-216 (545)
72 PF13199 Glyco_hydro_66: Glyco 89.8 3.1 6.8E-05 41.9 10.6 129 3-138 116-266 (559)
73 PF01120 Alpha_L_fucos: Alpha- 85.8 6.4 0.00014 37.2 9.7 114 6-141 92-217 (346)
74 COG0296 GlgB 1,4-alpha-glucan 85.2 9.4 0.0002 39.0 10.9 127 6-140 166-306 (628)
75 PF02449 Glyco_hydro_42: Beta- 85.1 4.1 8.8E-05 38.8 8.1 122 5-143 10-140 (374)
76 PF14885 GHL15: Hypothetical g 84.6 2.2 4.8E-05 31.4 4.6 56 82-139 17-76 (79)
77 COG2342 Predicted extracellula 84.0 7.4 0.00016 35.5 8.5 42 100-142 110-151 (300)
78 COG4868 Uncharacterized protei 80.3 7.5 0.00016 36.3 7.3 76 4-91 91-167 (493)
79 smart00812 Alpha_L_fucos Alpha 77.1 24 0.00052 33.9 10.2 105 7-140 83-203 (384)
80 cd04883 ACT_AcuB C-terminal AC 76.1 11 0.00024 26.1 5.9 57 6-63 14-70 (72)
81 PF10566 Glyco_hydro_97: Glyco 76.0 8 0.00017 35.4 6.3 60 3-66 30-94 (273)
82 PRK13663 hypothetical protein; 74.3 24 0.00052 34.2 9.0 49 4-64 91-139 (493)
83 PF08903 DUF1846: Domain of un 71.3 15 0.00032 35.7 6.9 49 4-64 90-138 (491)
84 smart00642 Aamy Alpha-amylase 70.4 14 0.00031 31.0 6.1 59 5-67 19-92 (166)
85 cd06570 GH20_chitobiase-like_1 68.1 45 0.00099 31.0 9.5 111 2-128 15-144 (311)
86 COG1242 Predicted Fe-S oxidore 66.6 27 0.00058 32.1 7.3 58 3-65 127-188 (312)
87 PRK14582 pgaB outer membrane N 62.5 1.1E+02 0.0023 31.9 11.6 120 4-138 333-466 (671)
88 PLN02982 galactinol-raffinose 62.0 1.1E+02 0.0024 32.2 11.5 29 4-33 238-266 (865)
89 cd02742 GH20_hexosaminidase Be 61.3 38 0.00083 31.2 7.7 110 3-128 14-145 (303)
90 PRK13840 sucrose phosphorylase 59.6 12 0.00026 37.3 4.1 34 106-139 162-195 (495)
91 cd04882 ACT_Bt0572_2 C-termina 57.7 34 0.00073 22.9 5.2 53 6-61 12-64 (65)
92 cd06542 GH18_EndoS-like Endo-b 56.8 43 0.00093 29.8 7.0 60 47-139 53-113 (255)
93 cd06569 GH20_Sm-chitobiase-lik 56.4 87 0.0019 30.8 9.5 125 3-128 20-191 (445)
94 smart00633 Glyco_10 Glycosyl h 55.8 42 0.00091 30.0 6.8 50 4-63 135-187 (254)
95 PF10096 DUF2334: Uncharacteri 55.0 36 0.00078 30.4 6.2 60 3-64 14-74 (243)
96 PF00331 Glyco_hydro_10: Glyco 54.3 16 0.00034 34.1 3.9 52 4-63 187-238 (320)
97 PF00728 Glyco_hydro_20: Glyco 53.5 39 0.00085 31.5 6.5 121 2-128 15-153 (351)
98 PF07485 DUF1529: Domain of Un 52.6 35 0.00076 27.3 5.0 52 2-56 65-118 (123)
99 cd04908 ACT_Bt0572_1 N-termina 52.5 71 0.0015 21.8 6.2 52 6-62 14-65 (66)
100 cd04909 ACT_PDH-BS C-terminal 49.6 36 0.00077 23.4 4.3 54 6-61 14-69 (69)
101 TIGR03852 sucrose_gtfA sucrose 49.5 23 0.0005 35.0 4.3 34 106-139 158-191 (470)
102 cd06568 GH20_SpHex_like A subg 48.4 1.2E+02 0.0026 28.4 8.8 116 3-128 16-151 (329)
103 PF03537 Glyco_hydro_114: Glyc 47.9 19 0.0004 26.0 2.6 23 46-68 37-59 (74)
104 TIGR00262 trpA tryptophan synt 46.9 46 0.001 30.0 5.6 68 4-71 71-153 (256)
105 cd06564 GH20_DspB_LnbB-like Gl 46.4 77 0.0017 29.5 7.2 109 3-128 15-152 (326)
106 TIGR02455 TreS_stutzeri trehal 45.8 70 0.0015 33.0 7.0 32 108-139 262-296 (688)
107 PF13653 GDPD_2: Glycerophosph 45.6 21 0.00046 21.0 2.1 17 122-138 12-28 (30)
108 cd06563 GH20_chitobiase-like T 45.1 1.8E+02 0.004 27.4 9.6 116 3-128 16-162 (357)
109 cd02871 GH18_chitinase_D-like 44.2 96 0.0021 28.7 7.4 58 47-140 62-120 (312)
110 cd03113 CTGs CTP synthetase (C 43.3 48 0.001 29.9 4.9 26 49-74 21-47 (255)
111 PF01301 Glyco_hydro_35: Glyco 42.7 41 0.00089 31.4 4.7 65 6-73 25-91 (319)
112 KOG3111 D-ribulose-5-phosphate 41.7 29 0.00062 30.1 3.1 39 35-73 89-127 (224)
113 PF06418 CTP_synth_N: CTP synt 40.6 39 0.00085 30.8 4.0 40 49-91 22-63 (276)
114 PF08924 DUF1906: Domain of un 40.4 64 0.0014 26.1 5.0 58 5-63 77-134 (136)
115 PRK09454 ugpQ cytoplasmic glyc 39.3 63 0.0014 28.7 5.2 19 122-140 222-240 (249)
116 PRK08883 ribulose-phosphate 3- 39.2 68 0.0015 28.2 5.3 62 10-72 48-120 (220)
117 PRK15063 isocitrate lyase; Pro 36.1 73 0.0016 31.1 5.3 58 3-67 289-348 (428)
118 cd08613 GDPD_GDE4_like_1 Glyce 35.0 91 0.002 29.1 5.6 20 121-140 286-305 (309)
119 PRK06769 hypothetical protein; 34.9 48 0.001 27.7 3.5 23 42-64 28-50 (173)
120 TIGR00559 pdxJ pyridoxine 5'-p 34.4 68 0.0015 28.7 4.4 63 1-70 69-135 (237)
121 TIGR01261 hisB_Nterm histidino 34.4 50 0.0011 27.4 3.5 24 42-65 29-52 (161)
122 cd02877 GH18_hevamine_XipI_cla 34.3 1.8E+02 0.0039 26.6 7.4 23 43-65 57-79 (280)
123 PRK13745 anaerobic sulfatase-m 34.1 95 0.0021 29.9 5.9 54 4-70 152-205 (412)
124 PRK08745 ribulose-phosphate 3- 33.8 95 0.0021 27.4 5.3 62 10-72 52-124 (223)
125 cd02874 GH18_CFLE_spore_hydrol 32.9 1.1E+02 0.0024 28.1 5.9 65 47-139 47-112 (313)
126 cd02875 GH18_chitobiase Chitob 32.5 1.3E+02 0.0028 28.5 6.4 60 44-141 62-123 (358)
127 PRK09722 allulose-6-phosphate 32.3 2.4E+02 0.0051 25.1 7.6 37 36-72 85-122 (229)
128 PRK05380 pyrG CTP synthetase; 32.2 53 0.0011 33.0 3.8 26 49-74 23-49 (533)
129 TIGR00213 GmhB_yaeD D,D-heptos 32.0 57 0.0012 27.2 3.5 22 43-64 27-48 (176)
130 cd04886 ACT_ThrD-II-like C-ter 31.9 1.1E+02 0.0025 20.3 4.6 55 7-62 12-72 (73)
131 TIGR01664 DNA-3'-Pase DNA 3'-p 31.7 58 0.0012 27.2 3.5 22 44-65 44-65 (166)
132 cd07381 MPP_CapA CapA and rela 31.1 1.8E+02 0.0039 25.5 6.8 58 4-71 161-220 (239)
133 TIGR01656 Histidinol-ppas hist 31.0 59 0.0013 26.2 3.4 23 43-65 28-50 (147)
134 COG0036 Rpe Pentose-5-phosphat 30.9 1E+02 0.0023 27.2 5.0 62 10-72 52-123 (220)
135 COG3661 AguA Alpha-glucuronida 30.8 2.9E+02 0.0063 27.3 8.2 102 4-136 182-285 (684)
136 PRK08392 hypothetical protein; 30.3 1.7E+02 0.0037 25.3 6.4 20 49-68 165-184 (215)
137 PLN02327 CTP synthase 30.0 57 0.0012 32.9 3.6 26 49-74 22-48 (557)
138 cd06545 GH18_3CO4_chitinase Th 29.2 1.7E+02 0.0037 26.0 6.3 62 46-140 47-109 (253)
139 cd07372 2A5CPDO_B The beta sub 28.9 2.8E+02 0.006 25.6 7.7 67 4-72 36-126 (294)
140 TIGR00337 PyrG CTP synthase. C 28.5 91 0.002 31.3 4.7 26 49-74 22-48 (525)
141 COG0504 PyrG CTP synthase (UTP 28.4 95 0.0021 30.9 4.7 26 49-74 22-48 (533)
142 PF13204 DUF4038: Protein of u 28.1 74 0.0016 29.2 3.8 61 3-64 28-107 (289)
143 TIGR03356 BGL beta-galactosida 27.9 2.4E+02 0.0051 27.5 7.5 106 5-144 54-165 (427)
144 TIGR01691 enolase-ppase 2,3-di 27.8 52 0.0011 28.9 2.7 30 36-65 89-118 (220)
145 PF07488 Glyco_hydro_67M: Glyc 27.5 2.9E+02 0.0064 25.8 7.4 99 4-136 56-156 (328)
146 PF07555 NAGidase: beta-N-acet 27.3 1.6E+02 0.0035 27.4 5.9 93 4-137 14-111 (306)
147 PF13709 DUF4159: Domain of un 27.2 1.1E+02 0.0024 26.7 4.5 71 213-303 11-81 (207)
148 cd00858 GlyRS_anticodon GlyRS 27.2 2.3E+02 0.0049 22.0 6.0 45 4-66 41-85 (121)
149 PHA02119 hypothetical protein 26.6 62 0.0013 23.0 2.3 46 13-60 20-69 (87)
150 cd06562 GH20_HexA_HexB-like Be 26.5 2E+02 0.0044 27.0 6.6 116 3-128 16-146 (348)
151 cd08564 GDPD_GsGDE_like Glycer 26.4 1.3E+02 0.0029 26.9 5.1 18 121-138 239-256 (265)
152 COG3510 CmcI Cephalosporin hyd 26.4 78 0.0017 27.6 3.3 49 257-305 163-211 (237)
153 smart00812 Alpha_L_fucos Alpha 26.4 62 0.0013 31.1 3.1 27 38-65 75-101 (384)
154 TIGR01856 hisJ_fam histidinol 26.3 1.9E+02 0.0042 25.7 6.1 58 4-70 184-241 (253)
155 TIGR01662 HAD-SF-IIIA HAD-supe 26.0 88 0.0019 24.4 3.5 25 41-65 24-48 (132)
156 PRK14057 epimerase; Provisiona 25.9 3.1E+02 0.0068 24.8 7.3 34 38-71 103-145 (254)
157 PRK13758 anaerobic sulfatase-m 25.5 1.7E+02 0.0036 27.5 5.9 47 4-62 143-189 (370)
158 PRK08091 ribulose-phosphate 3- 25.5 4E+02 0.0088 23.6 7.8 36 37-72 95-132 (228)
159 PF07611 DUF1574: Protein of u 25.4 33 0.00072 32.5 1.0 37 34-71 241-277 (345)
160 PF09587 PGA_cap: Bacterial ca 24.5 2.5E+02 0.0055 24.8 6.6 57 5-71 171-229 (250)
161 smart00854 PGA_cap Bacterial c 24.4 2.7E+02 0.0058 24.4 6.7 58 4-71 159-218 (239)
162 PF05762 VWA_CoxE: VWA domain 24.1 2.1E+02 0.0045 25.0 5.8 55 5-68 134-188 (222)
163 PF13344 Hydrolase_6: Haloacid 24.1 1.1E+02 0.0024 23.1 3.6 30 36-65 8-37 (101)
164 PF00834 Ribul_P_3_epim: Ribul 23.3 1E+02 0.0022 26.8 3.6 36 37-72 84-119 (201)
165 PF01120 Alpha_L_fucos: Alpha- 23.1 74 0.0016 30.0 2.9 27 38-65 85-111 (346)
166 cd03409 Chelatase_Class_II Cla 22.7 3.1E+02 0.0067 20.0 7.3 56 3-70 15-70 (101)
167 TIGR03470 HpnH hopanoid biosyn 22.6 1.7E+02 0.0038 27.1 5.3 21 44-64 148-168 (318)
168 PLN02635 disproportionating en 22.5 1.5E+02 0.0033 29.9 5.1 74 50-127 229-314 (538)
169 TIGR01675 plant-AP plant acid 22.4 1.5E+02 0.0032 26.4 4.5 61 3-64 59-142 (229)
170 PRK14511 maltooligosyl trehalo 22.3 2.2E+02 0.0048 30.6 6.4 60 4-67 19-91 (879)
171 PF13986 DUF4224: Domain of un 22.1 1.2E+02 0.0027 19.7 2.9 21 43-63 13-33 (47)
172 KOG1615 Phosphoserine phosphat 22.0 97 0.0021 27.1 3.1 25 42-66 88-112 (227)
173 KOG2387 CTP synthase (UTP-ammo 21.9 1.2E+02 0.0026 29.9 3.9 23 52-74 25-48 (585)
174 KOG0674 Calreticulin [Posttran 21.9 39 0.00084 31.5 0.7 11 242-252 131-141 (406)
175 cd00598 GH18_chitinase-like Th 21.7 4.1E+02 0.0088 22.2 7.1 31 111-141 84-115 (210)
176 cd03413 CbiK_C Anaerobic cobal 21.3 3.7E+02 0.0081 20.4 6.5 53 4-71 15-67 (103)
177 cd00419 Ferrochelatase_C Ferro 21.1 1.3E+02 0.0027 24.3 3.5 60 4-69 40-101 (135)
178 TIGR02109 PQQ_syn_pqqE coenzym 21.0 1.6E+02 0.0034 27.6 4.7 45 5-61 132-176 (358)
179 PRK11440 putative hydrolase; P 21.0 3.4E+02 0.0075 22.7 6.4 20 3-22 33-52 (188)
180 COG0826 Collagenase and relate 21.0 2.3E+02 0.0049 26.9 5.7 24 46-69 50-73 (347)
181 TIGR01681 HAD-SF-IIIC HAD-supe 20.9 74 0.0016 25.1 2.1 22 43-64 30-51 (128)
182 PHA02103 hypothetical protein 20.7 83 0.0018 24.4 2.2 40 102-141 67-110 (135)
183 PRK08057 cobalt-precorrin-6x r 20.7 3.8E+02 0.0082 24.0 6.8 64 5-70 12-78 (248)
184 PRK05301 pyrroloquinoline quin 20.3 1.6E+02 0.0034 27.9 4.6 46 5-62 141-186 (378)
185 COG3693 XynA Beta-1,4-xylanase 20.2 2.2E+02 0.0048 26.8 5.2 21 5-25 204-224 (345)
186 TIGR01428 HAD_type_II 2-haloal 20.2 1.2E+02 0.0027 25.4 3.5 25 42-66 92-116 (198)
187 cd02064 FAD_synthetase_N FAD s 20.2 3.3E+02 0.0071 22.8 6.1 28 36-63 108-135 (180)
188 PRK07328 histidinol-phosphatas 20.1 3.5E+02 0.0076 24.2 6.6 19 48-66 180-198 (269)
189 PF00150 Cellulase: Cellulase 20.1 92 0.002 27.5 2.8 59 6-67 22-84 (281)
190 PRK06740 histidinol-phosphatas 20.0 3.8E+02 0.0081 25.1 7.0 17 50-66 276-292 (331)
No 1
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=100.00 E-value=5.6e-81 Score=585.75 Aligned_cols=299 Identities=52% Similarity=0.953 Sum_probs=279.2
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSG 81 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~ 81 (310)
.+++|+++++++|+++||||+|+ +|.+|++ +++|+||+++||||++|+++||++|+|+++|++|+|..+++|.+|+++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~-lD~~~~~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~ 100 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIY-LDIDYMDGYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEG 100 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEE-ECchhhCCCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHH
Confidence 57899999999999999999975 6999998 899999999999999999999999999999999999988778899999
Q ss_pred cccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCCCCcccCCCCC-CCCCCCcCCCC
Q 021612 82 SKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTK-TMPESNIHRGD 160 (310)
Q Consensus 82 ~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~e~~~~~~~~~-~lp~~~~~~g~ 160 (310)
+++|+||++++|+++++.+|+|.+++||||||+|++||.++++++++.||||||+|+|||+.++.... ++|.+..|.+.
T Consensus 101 ~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~p~~~~~~~~ 180 (339)
T cd06604 101 LENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDLGVDGIWNDMNEPAVFNTPGKTTMPRDAVHRLD 180 (339)
T ss_pred HHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhhCCCceEeecCCCccccCCcccccCCccceeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999998876543 47887777643
Q ss_pred CCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHHhhhcC
Q 021612 161 DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSG 240 (310)
Q Consensus 161 ~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~~~l~G 240 (310)
. +...+.++||+|++++++|+++++++..+++|||+++||+++|+|||+++|+||+.++|++|+.+|+++|++|++|
T Consensus 181 ~---~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~ssW~~L~~~i~~~l~~~l~G 257 (339)
T cd06604 181 G---GGGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYAGIQRYAAVWTGDNRSSWEHLRLSIPMLLNLGLSG 257 (339)
T ss_pred C---CCCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEecccccccccccccCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 2 1236889999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHHHHHHHHh
Q 021612 241 QPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 305 (310)
Q Consensus 241 ~p~~g~DIgGf~g~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~ 305 (310)
+|++|+|||||.+++++|||+||+|+|||+|+||+|+..+..++|||.|++++.+++|++++-+.
T Consensus 258 ~~~~g~DIGGf~~~~~~EL~~RW~Q~g~f~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~~lRy 322 (339)
T cd06604 258 VPFVGADIGGFGGDPSPELLVRWMQLGAFFPFFRNHSAKGTRDQEPWAFGEEVEEIAREAIKLRY 322 (339)
T ss_pred CcccccccCCCCCCCCHHHHHHHHHHHhccchhhccCCCCCCCCCCeecChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998777899999999999999999998653
No 2
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=100.00 E-value=6.8e-81 Score=634.52 Aligned_cols=301 Identities=72% Similarity=1.291 Sum_probs=287.3
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSG 81 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~ 81 (310)
.+++|++++++||+++||||+| |+|.+|++ +++||||+++||||++|+++||++|+|++++++|+|..+++|..|+++
T Consensus 199 sq~eV~eva~~fre~~IP~DvI-wlDidYm~g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~eg 277 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVV-WMDIDYMDGFRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAEEGYFVYDSG 277 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEE-EEehhhhcCCCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccCCCCHHHHhH
Confidence 4789999999999999999996 57999998 899999999999999999999999999999999999998889999999
Q ss_pred cccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCCCCcccCCCCCCCCCCCcCCCCC
Q 021612 82 SKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDD 161 (310)
Q Consensus 82 ~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~e~~~~~~~~~~lp~~~~~~g~~ 161 (310)
.++++||++++|+++++.+|||.+++||||||+|++||.++++.+++.||||||+|||||+.|+...+++|.++.|.|+.
T Consensus 278 ~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnEPa~f~~~~~t~P~~~~h~g~~ 357 (978)
T PLN02763 278 CENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNEPAVFKTVTKTMPETNIHRGDE 357 (978)
T ss_pred hhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCCCccccCCcCCCCccccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999988778899988888766
Q ss_pred CCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHHhhhcCC
Q 021612 162 EIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQ 241 (310)
Q Consensus 162 ~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~~~l~G~ 241 (310)
..|+..+|.++||+|+++++||+|+++++..+++|||++|||+|+|+|||+++|+||+.++|++|+.+|+++|++||||+
T Consensus 358 ~~gG~~~h~~~HNlYgll~akatyEgl~~~~~~kRPFilTRSgfaGsQRYaa~WtGDn~SsWe~L~~sI~~~LnlgLSGi 437 (978)
T PLN02763 358 ELGGVQNHSHYHNVYGMLMARSTYEGMLLANKNKRPFVLTRAGFIGSQRYAATWTGDNLSNWEHLHMSIPMVLQLGLSGQ 437 (978)
T ss_pred ccCCccCHHHHhhhhHHHHHHHHHHHHHHhCCCCCcEEEEccccCcCCCCceEECCCccCCHHHHHHHHHHHHHHHhcCC
Confidence 56666789999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHHHHHHHH
Q 021612 242 PFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 304 (310)
Q Consensus 242 p~~g~DIgGf~g~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~ 304 (310)
||||+|||||.|++++|||+||+|+|||+|+||+|+..++..+|||+|++++++++|++|+.-
T Consensus 438 pf~G~DIGGF~G~~~~ELy~RW~Q~GaF~P~fR~Hs~~gt~~qEPW~fgeev~~i~R~ai~LR 500 (978)
T PLN02763 438 PLSGPDIGGFAGDATPKLFGRWMGVGAMFPFARGHSEQGTIDHEPWSFGEECEEVCRLALKRR 500 (978)
T ss_pred cccccccCCCCCCCCHHHHHHHHHHhhhhHHhhhccCCCCCCcCCeecChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888789999999999999999999753
No 3
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=100.00 E-value=9.7e-80 Score=577.16 Aligned_cols=296 Identities=40% Similarity=0.730 Sum_probs=276.8
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSG 81 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~ 81 (310)
+++||+++|++|++++||||+|+ +|.+|++ +++|+||+++||||++|+++||++|+|+++|++|+|..++++.+|+++
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~-lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~ 100 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIW-LDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEA 100 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEE-EChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHH
Confidence 57999999999999999999975 6988877 899999999999999999999999999999999999988778899999
Q ss_pred cccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh---CCccEEEecCCCCcccCCCCCCCCCCCcCC
Q 021612 82 SKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY---NGVDGIWNDMNEPAVFKSVTKTMPESNIHR 158 (310)
Q Consensus 82 ~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~---~Gvdg~w~D~~e~~~~~~~~~~lp~~~~~~ 158 (310)
+++|+||++++|+++++.+|||.+++||||||+|++||.+++++++. .|++|+|+|++||+.|+..+.++|.+..+.
T Consensus 101 ~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~~~~~~~p~d~~~~ 180 (339)
T cd06603 101 KDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFNGPELTMPKDAIHY 180 (339)
T ss_pred HHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccCCCCCcCCCcceec
Confidence 99999999999999999999999999999999999999999998874 689999999999999987777888877665
Q ss_pred CCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcC-CCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHHhh
Q 021612 159 GDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADK-DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLG 237 (310)
Q Consensus 159 g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~-~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~~~ 237 (310)
+. ..+.++||+|++++++++++++++..+ ++|||++|||+++|+|||+++|+||+.++|+.|+.+|+++|++|
T Consensus 181 ~~------~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~i~~~L~~~ 254 (339)
T cd06603 181 GG------IEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFAGSQRYAAIWTGDNTATWEHLKISIPMLLSLN 254 (339)
T ss_pred CC------CcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEecccccccceeeeeCCCccCCHHHHHHHHHHHHHHh
Confidence 31 268899999999999999999997754 78999999999999999999999999999999999999999999
Q ss_pred hcCCCccccCCCCCCCCCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHHHHHHHHh
Q 021612 238 LSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 305 (310)
Q Consensus 238 l~G~p~~g~DIgGf~g~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~ 305 (310)
++|+|+||+|||||.+++++|||+||+|+|||+|+||+|+..++..+|||.|++++.+++|++|+-+.
T Consensus 255 l~G~~~~g~DiGGf~~~~~~EL~~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~~lRy 322 (339)
T cd06603 255 ICGIPFCGADVGGFFGNPDEELLVRWYQAGAFYPFFRAHAHIDTKRREPWLFGEEYTSIIREAIRLRY 322 (339)
T ss_pred hcCccccCCccCCcCCCCCHHHHHHHHHHhhcCceeecCCCCCCCCCCCeecChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998777789999999999999999998764
No 4
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=100.00 E-value=3e-79 Score=568.51 Aligned_cols=277 Identities=38% Similarity=0.747 Sum_probs=263.0
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSG 81 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~ 81 (310)
.++||++++++|++++||||+|+ +|.+|++ +++|+||+++||||++|+++||++|+|+++|++|+|..++.+..|.++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~-lD~~~~~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~ 100 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVF-LDIHYMDSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSG 100 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEE-EChhhhCCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHH
Confidence 57899999999999999999975 6999998 899999999999999999999999999999999999988777889999
Q ss_pred cccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHH-hCCccEEEecCCCCcccCCCCCCCCCCCcCCCC
Q 021612 82 SKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGD 160 (310)
Q Consensus 82 ~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~e~~~~~~~~~~lp~~~~~~g~ 160 (310)
.++++||++.+|+++++.+|||.+++||||||+|++||.+++++++ +.||||||+|+|||+.+
T Consensus 101 ~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~~~---------------- 164 (317)
T cd06600 101 MDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPSDF---------------- 164 (317)
T ss_pred HHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCccH----------------
Confidence 9999999999999999999999999999999999999999999987 89999999999998642
Q ss_pred CCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHHhhhcC
Q 021612 161 DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSG 240 (310)
Q Consensus 161 ~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~~~l~G 240 (310)
.++||+|++++++++++++++..+++|||++|||+++|+|||+++|+||+.|+|++|+.+|+++|++|++|
T Consensus 165 ---------~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~i~~~l~~gl~G 235 (317)
T cd06600 165 ---------EKVHNLYGLYEAMATAEGFRTSHPRNRIFILTRSGFAGSQKYAAIWTGDNTASWDDLKLSIPLVLGLSISG 235 (317)
T ss_pred ---------HHhcchhhHHHHHHHHHHHHHhcCCCCceEEEeccccccCCccceECCcccccHHHHHHHHHHHHHHHhcC
Confidence 36899999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHHHHHHHHh
Q 021612 241 QPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 305 (310)
Q Consensus 241 ~p~~g~DIgGf~g~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~ 305 (310)
+||+|+|||||.+++++|||+||+|+|||+|+||+|+......+|||+|++++.+++|++|+-..
T Consensus 236 ~p~~g~DiGGf~~~~~~EL~~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~~lRy 300 (317)
T cd06600 236 IPFVGCDIGGFQGDNSMELLVRWYQLGAFFPFYRSHKATDGKDTEPVFFPDYYKEKVREIVELRY 300 (317)
T ss_pred CCccCcccCCCCCCCCHHHHHHHHHHhhcCceeeccCCCCCCCCCCeecCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998777789999999999999999998653
No 5
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=1.2e-77 Score=558.09 Aligned_cols=283 Identities=30% Similarity=0.535 Sum_probs=258.7
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-------CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-------FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGY 75 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-------~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~ 75 (310)
.+++|++++++|++++||||+|+ +|.+|++ +++|+||+++||||++|+++||++|+|+++|++|+|..++.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~-lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~- 99 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAI-LDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSK- 99 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEE-EechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCch-
Confidence 57899999999999999999975 6999975 56999999999999999999999999999999999998764
Q ss_pred cccccccccceeE-ecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCCCCcccCCCCCCCCCC
Q 021612 76 FVYDSGSKIDVWI-QKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPES 154 (310)
Q Consensus 76 ~~y~~~~~~~~~v-~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~e~~~~~~~~~~lp~~ 154 (310)
.|++++++|+++ +..+|+++++.+|+|.+++||||||+|++||.++++++.+.||||||+|+|||+.++ .+
T Consensus 100 -~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gvdg~w~D~~Ep~~~~-------~~ 171 (317)
T cd06598 100 -NWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLIDQGVTGWWGDLGEPEVHP-------PD 171 (317)
T ss_pred -hHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhhCCccEEEecCCCccccC-------Cc
Confidence 799999999955 555788999999999999999999999999999999999999999999999998753 23
Q ss_pred CcCCCCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcc-eeeCCCCCCCchHHHHHHHHH
Q 021612 155 NIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYA-ATWTGDNVSNWEHLHMSISMV 233 (310)
Q Consensus 155 ~~~~g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~-~~w~GD~~ssW~~L~~~i~~~ 233 (310)
..+.+ + .+.++||+|++++++++|+++++..+++|||+++||+++|+|||+ ++|+||+.++|++|+.+|+++
T Consensus 172 ~~~~~-----g--~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~Gsqry~~~~WsGD~~s~W~~L~~~i~~~ 244 (317)
T cd06598 172 MCHHK-----G--KAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAGSQRYGVIPWSGDVGRTWDGLKSQPNAA 244 (317)
T ss_pred cccCC-----C--cHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCccccCcCCccCCCCcCCHHHHHHHHHHH
Confidence 33321 1 467899999999999999999988888999999999999999998 589999999999999999999
Q ss_pred HHhhhcCCCccccCCCCCCCC--CChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHHHHHHH
Q 021612 234 LQLGLSGQPFSGPDIGGFDGN--ATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIA 303 (310)
Q Consensus 234 l~~~l~G~p~~g~DIgGf~g~--~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~i~~ 303 (310)
|++|++|+||||+|||||.++ +++|||+||+|+|+|+|+||+|+..+ ..+|||.|++++++++|++|+-
T Consensus 245 l~~~l~G~~~~g~DIGGf~~~~~~~~EL~~RW~q~g~f~P~~R~H~~~~-~~~ePw~~~~~~~~~~r~~~~l 315 (317)
T cd06598 245 LQMSMSGIDYYHSDIGGFAGGDELDPELYTRWFQYGAFDPPFRPHAQNA-IPPEPVFYSIGTKNINRENIRL 315 (317)
T ss_pred HhhhccCCcccCCCcCCcCCCCCCCHHHHHHHHHhccCCcccccCCCCC-CCCCCCcCChHHHHHHHHHHHh
Confidence 999999999999999999997 89999999999999999999999975 4689999999999999999973
No 6
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=100.00 E-value=1.6e-76 Score=554.50 Aligned_cols=275 Identities=39% Similarity=0.736 Sum_probs=260.3
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-CcceeeCCCCCCCh--HHHHHHHHhCCCeEEEEeCCccccC---CCcc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-FVVSLLTRHRFPDP--KSLAADLHLNGFKAIWMLDPGIKHE---DGYF 76 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~~ft~d~~~Fpdp--~~mi~~L~~~G~k~~~~v~P~i~~~---~~~~ 76 (310)
.+++|++++++||+++||||+| |+|.+|++ +++|+||+++|||| ++|+++||++|+|+++|++|+|..+ +.|.
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i-~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~ 100 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQ-WNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYP 100 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceE-EECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCH
Confidence 4789999999999999999997 46999997 89999999999999 9999999999999999999999986 4688
Q ss_pred ccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh-CCccEEEecCCCCcccCCCCCCCCCCC
Q 021612 77 VYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNEPAVFKSVTKTMPESN 155 (310)
Q Consensus 77 ~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~-~Gvdg~w~D~~e~~~~~~~~~~lp~~~ 155 (310)
+|++++++++||++.+|+++++.+|||.++++|||||+|++||.++++++++ .||||||+|++||+.+
T Consensus 101 ~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~~~----------- 169 (339)
T cd06602 101 PYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPSNF----------- 169 (339)
T ss_pred HHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCchH-----------
Confidence 8999999999999999999999999999999999999999999999999775 7999999999998542
Q ss_pred cCCCCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHH
Q 021612 156 IHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQ 235 (310)
Q Consensus 156 ~~~g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~ 235 (310)
.++||+|++++++++++++++. +++|+|++|||+++|+|||+++|+||+.++|++|+.+|+++|+
T Consensus 170 --------------~~~hN~y~~~~~~~~~~~~~~~-~~~r~~~~sRs~~~G~qry~~~w~GD~~s~W~~L~~~i~~~l~ 234 (339)
T cd06602 170 --------------YDVHNLYGLSEAIATYKALQSI-PGKRPFVISRSTFPGSGRYAGHWLGDNASTWEDLRYSIIGMLE 234 (339)
T ss_pred --------------hhhcchhhHHHHHHHHHHHHhc-CCCCCEEEEecCcccccccceeECCCccCCHHHHHHHHHHHHH
Confidence 3579999999999999999876 7899999999999999999999999999999999999999999
Q ss_pred hhhcCCCccccCCCCCCCCCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHHHHHHHH
Q 021612 236 LGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 304 (310)
Q Consensus 236 ~~l~G~p~~g~DIgGf~g~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~ 304 (310)
+|+||+||||+|||||.+++++|||+||+|+|+|+|+||+|+..+...+|||.|++++++++|++|+-.
T Consensus 235 ~~~sG~~~~~~DigGf~g~~~~EL~~RW~Q~~~f~P~~r~H~~~~~~~~ePw~~~~~~~~~~r~~~~lR 303 (339)
T cd06602 235 FNLFGIPMVGADICGFNGDTTEELCARWMQLGAFYPFSRNHNDIGAIPQEPYVWGPSVADAARKALNIR 303 (339)
T ss_pred HHhcCCCcccCCCCCCCCCCCHHHHHHHHHHHhhCceeeccCCCCCCCcCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987778999999999999999999865
No 7
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=6.9e-76 Score=544.97 Aligned_cols=280 Identities=28% Similarity=0.512 Sum_probs=260.2
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-Cc--ceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-FV--VSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYD 79 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~--~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~ 79 (310)
.+++|+++|+++++++||||+++ +|++|++ ++ +|+||+++||||++|+++||++|+|+++|++|+|..++. +|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~-lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~--~~~ 98 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIH-LDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSP--LFK 98 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEE-EecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCch--hHH
Confidence 57899999999999999999974 6999997 44 999999999999999999999999999999999988764 799
Q ss_pred cccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCCCCcccCCCCCCCCCCCc-CC
Q 021612 80 SGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNI-HR 158 (310)
Q Consensus 80 ~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~e~~~~~~~~~~lp~~~~-~~ 158 (310)
+++++++||++.+|+++.+.+|+|.+++||||||+|++||.++++++.+.||||||+|++|+ +|.+.. +.
T Consensus 99 e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gid~~~~D~~e~---------~p~~~~~~~ 169 (308)
T cd06593 99 EAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDMGVDCFKTDFGER---------IPTDVVYYD 169 (308)
T ss_pred HHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHhCCcEEecCCCCC---------CCccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999997 344433 22
Q ss_pred CCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHHhhh
Q 021612 159 GDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGL 238 (310)
Q Consensus 159 g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~~~l 238 (310)
|. .+.++||+|+++++++++|++++..+++|||++|||+++|+|||+++|+||+.++|++|+.+|+++|++|+
T Consensus 170 g~-------~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~Gsqry~~~w~GD~~s~w~~L~~~i~~~l~~~l 242 (308)
T cd06593 170 GS-------DGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWAGSQKYPVHWGGDCESTFEGMAESLRGGLSLGL 242 (308)
T ss_pred CC-------CcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCccccccCCCEECCCcccCHHHHHHHHHHHHhccc
Confidence 21 46789999999999999999998888889999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCCCCCCCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHHHHHHHH
Q 021612 239 SGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 304 (310)
Q Consensus 239 ~G~p~~g~DIgGf~g~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~ 304 (310)
+|+|++|+|||||.+++++|||+||+|+|||+|+||+|+.. .+|||.|++++++++|++|+-.
T Consensus 243 ~G~~~~g~DigGf~~~~~~EL~~RW~q~gaf~P~~r~h~~~---~~~Pw~~~~~~~~~~r~~~~lR 305 (308)
T cd06593 243 SGFGFWSHDIGGFEGTPPPDLYKRWAQFGLLSSHSRLHGSG---YREPWEYGEEAVDVVRKFAKLK 305 (308)
T ss_pred cCCceecCccCCcCCCCCHHHHHHHHHhCcCCcccccCCCC---CCCCcccChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999874 7999999999999999999754
No 8
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=2.2e-75 Score=543.24 Aligned_cols=273 Identities=29% Similarity=0.557 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSG 81 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~ 81 (310)
.++||+++|++||+++||||+|+ +|.+|++ +++||||+++||||++|+++||++|+|++++++|+|..
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~-lDidy~~~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~---------- 90 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLH-VDVDFQDNYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISY---------- 90 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEE-EcCchhcCCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCceec----------
Confidence 57899999999999999999975 6999998 99999999999999999999999999999999999881
Q ss_pred cccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCCCCcccCCC--CCCCCCCCcCCC
Q 021612 82 SKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSV--TKTMPESNIHRG 159 (310)
Q Consensus 82 ~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~e~~~~~~~--~~~lp~~~~~~g 159 (310)
+..|++.+++|||+||+|++||.++++.+.+.||||||+|||||+.|+.. ..++|.+..+..
T Consensus 91 ----------------g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~~Gv~~~W~DmnEp~~~~~~~~~~~~p~~~~~~~ 154 (332)
T cd06601 91 ----------------GGGLGSPGLYPDLGRPDVREWWGNQYKYLFDIGLEFVWQDMTTPAIMPSYGDMKGFPPRLLVTD 154 (332)
T ss_pred ----------------CccCCCCceeeCCCCHHHHHHHHHHHHHHHhCCCceeecCCCCcccccCCCccCCCCCcccccC
Confidence 24567788999999999999999999999999999999999999988653 245665544321
Q ss_pred CC-C-CCCccccchhhhhhHHHHHHHHHHHhhhhc--CCCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHH
Q 021612 160 DD-E-IGGCQNHSYYHNVYGMLMARSTYEGMKLAD--KDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQ 235 (310)
Q Consensus 160 ~~-~-~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~--~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~ 235 (310)
.. . ......|.++||+|++++++|+++++++.. +++||||+|||+++|+|||+++|+||+.|+|+.|+.+|+++|+
T Consensus 155 ~~~~~~~~~~~~~~~hN~Y~~~~~~a~~e~~~~~~~~~~~RpfiltRS~~aGsqrY~~~WsGDn~stW~~L~~si~~~L~ 234 (332)
T cd06601 155 DSYENNVKRKPAIELWNLYSYNLHKATWHGLNNLNARKNKRNFIIGRGSYAGMQRFAGLWTGDNSSSWDFLQINIAQVLN 234 (332)
T ss_pred CccccccCCchHHHHhhhhHHHHHHHHHHHHHHhhcCCCCCcEEEEecCcCccCCcCceeCCCcccCHHHHHHHHHHHHH
Confidence 11 0 001125789999999999999999998764 7899999999999999999999999999999999999999999
Q ss_pred hhhcCCCccccCCCCCCCC----------CChhHHHHHHHhhhhccccccCCCCC--CCCCCC-----------------
Q 021612 236 LGLSGQPFSGPDIGGFDGN----------ATPRLFGRWMGIGAMFPFCRGHTESD--AIDHEP----------------- 286 (310)
Q Consensus 236 ~~l~G~p~~g~DIgGf~g~----------~~~EL~~RW~Q~g~f~P~~r~h~~~~--~~~~eP----------------- 286 (310)
+||||+||||+|||||.++ +++|||+||+|+|||+|+||+|+... +..+||
T Consensus 235 ~~lsGip~~g~DIGGF~g~~~~~~~~~~~~~~EL~~RW~Q~GaF~P~~R~H~~~~~~~~~~ep~~~~~~~~~~~~~~~~~ 314 (332)
T cd06601 235 LGMSGLPIAGSDIGGFTSYDGENSIQRTWCNPELLIRWYQAGFLLPWFRNHYDRKIRQKFQEPAKYFQEPYAHLIDYEQL 314 (332)
T ss_pred hhhcCCCccCCccCCcCCCCcccccccCCCCHHHHHHHHHHhcCCceeccCCCCccCcccCCcccccccccccccccccc
Confidence 9999999999999999986 57999999999999999999999754 467888
Q ss_pred cccChhhHHHHHHHHHH
Q 021612 287 WSFGEEVLFCSSIVIIA 303 (310)
Q Consensus 287 w~~~~~~~~~~r~~i~~ 303 (310)
|.+ +++++++|++|+.
T Consensus 315 ~~~-~~~~~~~r~~i~~ 330 (332)
T cd06601 315 YLY-ENVPEICRKYVEL 330 (332)
T ss_pred ccc-HHHHHHHHHHHHh
Confidence 555 8999999999973
No 9
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=7.7e-75 Score=539.59 Aligned_cols=282 Identities=29% Similarity=0.442 Sum_probs=249.3
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-Cc--ceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-FV--VSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYD 79 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~--~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~ 79 (310)
.+++|++++++|++++||||+|+ +|.+|++ ++ +|+||+++||||++|+++||++|+|++++++|+|..++ ..|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~-lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~--~~y~ 98 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIV-QDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPET--ENYK 98 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEE-EechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCC--hhHH
Confidence 57899999999999999999974 6888876 56 99999999999999999999999999999999998754 4799
Q ss_pred cccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHh-HHhCCccEEEecCCCCcccCCCCCCCCCCCcCC
Q 021612 80 SGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHR 158 (310)
Q Consensus 80 ~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~-~~~~Gvdg~w~D~~e~~~~~~~~~~lp~~~~~~ 158 (310)
+++++++||++++|.++. .+|+|.+++||||||+|++||.+++++ +.++||||||+|+|||+.++.... .+.
T Consensus 99 e~~~~g~~v~~~~g~~~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~------~~~ 171 (319)
T cd06591 99 EMDEKGYLIKTDRGPRVT-MQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPEYSVYDFG------LDN 171 (319)
T ss_pred HHHHCCEEEEcCCCCeee-eeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCccCCccc------ccC
Confidence 999999999999988876 899999999999999999999888765 558999999999999987642210 000
Q ss_pred CCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcc-eeeCCCCCCCchHHHHHHHHHHHhh
Q 021612 159 GDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYA-ATWTGDNVSNWEHLHMSISMVLQLG 237 (310)
Q Consensus 159 g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~-~~w~GD~~ssW~~L~~~i~~~l~~~ 237 (310)
.....+ .+.++||+|+++++|++++++++..+++|||++|||+++|+|||+ .+|+||+.|+|++||.+|+++|++|
T Consensus 172 ~~~~~~---~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~Gsqry~~~~W~GD~~s~w~~L~~~i~~~l~~g 248 (319)
T cd06591 172 YRYHLG---PGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWAGSQRYGALVWSGDIDSSWETLRRQIAAGLNMG 248 (319)
T ss_pred cccCCC---CchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEeccccccccccCceeCCCccccHHHHHHHHHHHHHHh
Confidence 011111 467899999999999999999987778999999999999999998 4999999999999999999999999
Q ss_pred hcCCCccccCCCCCCCCCC---------hhHHHHHHHhhhhccccccCCCCCC-CCCCCcccChhhHHHH
Q 021612 238 LSGQPFSGPDIGGFDGNAT---------PRLFGRWMGIGAMFPFCRGHTESDA-IDHEPWSFGEEVLFCS 297 (310)
Q Consensus 238 l~G~p~~g~DIgGf~g~~~---------~EL~~RW~Q~g~f~P~~r~h~~~~~-~~~ePw~~~~~~~~~~ 297 (310)
|||+||+|+|||||.++++ +|||+||+|+|||+|+||+|+.+.. ..+|||.|++++++++
T Consensus 249 lsG~~~~g~DiGGF~~~~~~~~~~~~~~~EL~~RW~q~gaf~P~~R~H~~~~~~~~~ePw~~g~e~~~~~ 318 (319)
T cd06591 249 LSGIPWWTTDIGGFFVGNPPAGLDDPEYRELYVRWFQFGAFCPVMRSHGTREPREINEFWSYGEEVYDIL 318 (319)
T ss_pred hcCCccccCCcCCcCCCCccccccCCccHHHHHHHHHHhcCccccccCCCCCCCCCCcCcCCChHHHHhh
Confidence 9999999999999998755 8999999999999999999998754 3579999999999875
No 10
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-76 Score=567.53 Aligned_cols=294 Identities=38% Similarity=0.723 Sum_probs=277.7
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSG 81 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~ 81 (310)
..++|+++-+.|-+++||+|+| |+|.-+.+ .+.||||+.+||+|++|+++|.++|.|+|++|+|+|+.+++|..++++
T Consensus 370 DE~DV~~Vd~~FDehdiP~Dvi-WLDIEhtdgKrYFTWDk~~FP~P~~Ml~kLa~kgRklV~IvDPHIKkD~~Y~v~ke~ 448 (915)
T KOG1066|consen 370 DEEDVLTVDQGFDEHDIPYDVI-WLDIEHTDGKRYFTWDKHKFPNPKDMLKKLASKGRKLVTIVDPHIKKDDGYFVHKEA 448 (915)
T ss_pred chhhhhhhhcCccccCCccceE-EEeeeecCCceeEeeccccCCCHHHHHHHHHhcCCceEEEeCcccccCCCeEEhHHh
Confidence 3689999999999999999996 88998887 899999999999999999999999999999999999999999999999
Q ss_pred cccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh-CCc---cEEEecCCCCcccCCCCCCCCCCCcC
Q 021612 82 SKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGV---DGIWNDMNEPAVFKSVTKTMPESNIH 157 (310)
Q Consensus 82 ~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~-~Gv---dg~w~D~~e~~~~~~~~~~lp~~~~~ 157 (310)
+..+|+||+.+|+.|.|.||||.+.+|||.||++|+||+++.. +-+ .|. =.+|+|||||+.|..++.|||.+++|
T Consensus 449 ~~~gy~VKd~~G~DyeG~CWPG~S~yiDf~nP~~r~wW~~~fa-fd~y~g~t~nl~iWNDMNEPSVFnGPEiTm~kDaiH 527 (915)
T KOG1066|consen 449 KDKGYYVKDRDGSDYEGWCWPGSSSYIDFINPEARKWWKSQFA-FDRYEGSTPNLFIWNDMNEPSVFNGPEITMPKDAIH 527 (915)
T ss_pred hhCCeEEEecCCCcccccccCCCcccccccCHHHHHHHhhhcc-cccccCCCCceEEeccCCCccccCCCccccchhhhh
Confidence 9999999999999999999999999999999999999999975 222 333 36999999999999999999999999
Q ss_pred CCCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcC-CCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHHh
Q 021612 158 RGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADK-DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQL 236 (310)
Q Consensus 158 ~g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~-~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~~ 236 (310)
.|. ..|+++||+||+++..||++||+++.+ ..|||++|||.|+|+||+++.|+|||.++|++||.+|+++|++
T Consensus 528 yGg------~EHRdVHNiYG~~~h~aT~dGl~~R~~g~~RPFvLsRafFaGsQR~aAiWTGDN~A~W~HLkiSiPM~Lsl 601 (915)
T KOG1066|consen 528 YGG------WEHRDVHNIYGLMVHMATFDGLIARSGGKERPFVLSRAFFAGSQRTAAIWTGDNTADWDHLKISIPMVLSL 601 (915)
T ss_pred cCC------eeechhhhhhceeeeehhhhhhhhhcCCCcCceEEEeccccCccceeeeeccCCccchhhheeecceeEec
Confidence 863 369999999999999999999997754 6899999999999999999999999999999999999999999
Q ss_pred hhcCCCccccCCCCCCCCCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHHHHHHHH
Q 021612 237 GLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 304 (310)
Q Consensus 237 ~l~G~p~~g~DIgGf~g~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~ 304 (310)
|++|+||.|.|||||+|||++||++||+|.|+|.|+||.|+..++..||||.|++...+++|++|+.-
T Consensus 602 ~iaG~~F~GADVgGFFgNPd~ELlvRWYQ~gaf~PFFRaHAHiDTkRREPWLf~e~~~~iiRdal~~R 669 (915)
T KOG1066|consen 602 GIAGMPFVGADVGGFFGNPDPELLVRWYQTGAFQPFFRAHAHIDTKRREPWLFPEQTTQIIRDALRTR 669 (915)
T ss_pred ccccceecccccccccCCCCHHHHHHHHHhcccchhhhhhccccccccCccccCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999864
No 11
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=7.1e-75 Score=539.41 Aligned_cols=281 Identities=31% Similarity=0.567 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-----CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-----FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFV 77 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-----~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~ 77 (310)
+++||+++++++|+++||||+|+ +|.+|++ +.+|+||+++||||++|+++||++|+|++++++|+|..++ ++
T Consensus 27 ~q~~v~~~~~~~r~~~iP~d~i~-ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~--~~ 103 (317)
T cd06599 27 AQEALLEFIDKCREHDIPCDSFH-LSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDH--PR 103 (317)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEE-EeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCC--HH
Confidence 58899999999999999999975 6889985 4579999999999999999999999999999999998865 47
Q ss_pred cccccccceeEecCCCC-ceeEeecCCCccCCCCCCHHHHHHHHHHH-HhHHhCCccEEEecCCCCcccCCCCCCCCCCC
Q 021612 78 YDSGSKIDVWIQKADGT-PFIGEVWPGPCVFPDYTQSKVRSWWGSLV-KDFIYNGVDGIWNDMNEPAVFKSVTKTMPESN 155 (310)
Q Consensus 78 y~~~~~~~~~v~~~~g~-~~~~~~w~G~~~~~Dft~p~a~~ww~~~~-~~~~~~Gvdg~w~D~~e~~~~~~~~~~lp~~~ 155 (310)
|++++++++||++.+|. ++++.+|+|.+++||||||+|++||.+++ +.+.+.||||||+|++||+.+. .+.
T Consensus 104 y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~~~~-------~~~ 176 (317)
T cd06599 104 YKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEYEIWD-------DDA 176 (317)
T ss_pred HHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCCccCC-------Ccc
Confidence 99999999999998765 67899999999999999999999999999 4566899999999999997532 222
Q ss_pred cCCCCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHH
Q 021612 156 IHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQ 235 (310)
Q Consensus 156 ~~~g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~ 235 (310)
.+...+ .+ ..+..+||+|++++++|+|+++++..+++|||+++||+++|+|||+++|+||+.++|++|+.+|+++|+
T Consensus 177 ~~~~~g-~~--~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~G~qry~~~WsGD~~s~W~~L~~~i~~~L~ 253 (317)
T cd06599 177 VCDGFG-KP--GTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFAGIQRYAQTWSGDNRTSWKTLRYNIAMGLG 253 (317)
T ss_pred eecCCC-Cc--cchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCcccccCCcCeeCCCcccCHHHHHHHHHHHHh
Confidence 222111 01 134468999999999999999998888999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccccCCCCCCCC-CChhHHHHHHHhhhhccccccCCCCCC-CCCCCcccChhhHHHH
Q 021612 236 LGLSGQPFSGPDIGGFDGN-ATPRLFGRWMGIGAMFPFCRGHTESDA-IDHEPWSFGEEVLFCS 297 (310)
Q Consensus 236 ~~l~G~p~~g~DIgGf~g~-~~~EL~~RW~Q~g~f~P~~r~h~~~~~-~~~ePw~~~~~~~~~~ 297 (310)
+|+||+||||+|||||.++ +++|||+||+|+|||+|+||+|+..+. ..||||.|+ ++++++
T Consensus 254 ~glsG~~~~g~DIGGF~~~~~~~ELy~RW~Q~g~F~P~~R~H~~~~~~~~~ePw~f~-~~~~~~ 316 (317)
T cd06599 254 MGLSGVANIGHDIGGFAGPAPEPELFVRWVQNGIFQPRFCIHSWNTDNTVTEPWMYP-EVTDYI 316 (317)
T ss_pred hhccCCcccccccCccCCCCCCHHHHHHHHHHccCCHhhhcccCCCCCCCcCCeecc-cchhhc
Confidence 9999999999999999986 799999999999999999999997643 579999996 455544
No 12
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=100.00 E-value=1e-74 Score=537.60 Aligned_cols=276 Identities=24% Similarity=0.423 Sum_probs=248.6
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC----------CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccC
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD----------FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHE 72 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~----------~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~ 72 (310)
++++|+++++++++++||||+|+ +| +|++ +.+|+||+++||||++|+++||++|+|+++|++|+|+.+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~-ld-dw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~ 98 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLW-LQ-DWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLADD 98 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEE-Ec-cccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 57999999999999999999974 56 7865 136999999999999999999999999999999999987
Q ss_pred CCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhH-HhCCccEEEecCCCCcccCCCCCCC
Q 021612 73 DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF-IYNGVDGIWNDMNEPAVFKSVTKTM 151 (310)
Q Consensus 73 ~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~-~~~Gvdg~w~D~~e~~~~~~~~~~l 151 (310)
+.. .|+++.++++||++++|+++++.+|||.+++||||||+|++||.++++++ .++||||||+|+||+ +
T Consensus 99 ~~~-~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~---------~ 168 (317)
T cd06594 99 GPL-YYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEY---------L 168 (317)
T ss_pred Cch-hHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCC---------C
Confidence 542 27999999999999999999999999999999999999999999999887 589999999999996 3
Q ss_pred CCCCcCCCCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcc-eeeCCCCCCCch---HHH
Q 021612 152 PESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYA-ATWTGDNVSNWE---HLH 227 (310)
Q Consensus 152 p~~~~~~g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~-~~w~GD~~ssW~---~L~ 227 (310)
|.+..+.. | ..+.++||+|++++++++++++++..+++|||++|||+|+|+|||+ ++|+||+.++|+ +|+
T Consensus 169 p~d~~~~~-----g-~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~Gsqry~~~~WsGD~~s~W~~~~~L~ 242 (317)
T cd06594 169 PFDAVLHS-----G-EDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGFTGSQKYSTLFWAGDQMVSWDAHDGLK 242 (317)
T ss_pred CCcceecC-----C-CCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEcccccccccccccccCCCCCCCCcCcccHH
Confidence 33333321 1 1478899999999999999999988788999999999999999998 589999999998 799
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCC----CCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHH
Q 021612 228 MSISMVLQLGLSGQPFSGPDIGGFDG----NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFC 296 (310)
Q Consensus 228 ~~i~~~l~~~l~G~p~~g~DIgGf~g----~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~ 296 (310)
.+|+++|++||||+||+|+|||||.+ ++++|||+||+|+|||+|+||+|+.+.+..++||.+++++.++
T Consensus 243 ~~i~~~L~~~lsG~~~~g~DIGGF~~~~~~~~~~EL~~RW~Q~gaF~P~~R~H~~~~~~~~~~~~~~~~~~~~ 315 (317)
T cd06594 243 SVVPGALSSGLSGYALHHSDIGGYTSLNGYVRTEELLLRWAEMAAFTPVMRTHEGNRPDDNWQFYSDDETLRH 315 (317)
T ss_pred HHHHHHhhccccCCCcccCccCCCcCCCCCCCCHHHHHHHHHHhccccceecCCCCCCCCCcccccChHHHHh
Confidence 99999999999999999999999975 4899999999999999999999999887889999999887664
No 13
>PRK10658 putative alpha-glucosidase; Provisional
Probab=100.00 E-value=5.7e-74 Score=574.78 Aligned_cols=282 Identities=23% Similarity=0.459 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC---CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD---FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYD 79 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~---~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~ 79 (310)
.+++|+++|++|++++||||+|+ +|.+|++ +++|+||+++||||++|+++||++|+|+++|++|+|..++ ++|+
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~-lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s--~~f~ 357 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFH-FDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKS--PLFK 357 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEE-EchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCc--hHHH
Confidence 36789999999999999999976 5999997 5799999999999999999999999999999999998754 5899
Q ss_pred cccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCCCCcccCCCCCCCCCCCcCCC
Q 021612 80 SGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRG 159 (310)
Q Consensus 80 ~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~e~~~~~~~~~~lp~~~~~~g 159 (310)
+++++||||++++|+++.+..|+|.++++|||||+|++||.++++++++.||||||+|++|+ +|.+..+..
T Consensus 358 e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~---------~p~d~~~~~ 428 (665)
T PRK10658 358 EGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGER---------IPTDVVWFD 428 (665)
T ss_pred HHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCce---------eeccceecC
Confidence 99999999999999999999999999999999999999999999999999999999999996 454444331
Q ss_pred CCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHHhhhc
Q 021612 160 DDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLS 239 (310)
Q Consensus 160 ~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~~~l~ 239 (310)
| ..+.++||+|+++++||+|+++++..+++|+|+++||+++|+|||+++|+||+.++|++|+.+|+++|++|||
T Consensus 429 -----G-~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~~i~tRs~~aGsQry~~~WsGD~~stw~~l~~si~~~Ls~gls 502 (665)
T PRK10658 429 -----G-SDPQKMHNYYTYLYNKTVFDVLKETRGEGEAVLFARSATVGGQQFPVHWGGDCYSNYESMAESLRGGLSLGLS 502 (665)
T ss_pred -----C-CcHHHhcchhHHHHHHHHHHHHHHhcCCCceEEEEecccCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence 1 1577899999999999999999988788999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHHHHHHHH
Q 021612 240 GQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 304 (310)
Q Consensus 240 G~p~~g~DIgGf~g~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~ 304 (310)
|+||||+|||||.|.+++|||+||+|+|+|+|+||+|+.. ..++||.|++++.+++|++|+-.
T Consensus 503 G~~~~g~DIGGF~g~~~~ELy~RW~Q~g~f~P~~R~Hg~~--~~~ePW~fg~e~~~i~r~~i~lR 565 (665)
T PRK10658 503 GFGFWSHDIGGFENTATADVYKRWCAFGLLSSHSRLHGSK--SYRVPWAYDEEAVDVVRFFTKLK 565 (665)
T ss_pred CCccccCccCCCCCCCCHHHHHHHHHhcccChhhcccCCC--CCcCCcccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875 46999999999999999999854
No 14
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-73 Score=572.99 Aligned_cols=285 Identities=39% Similarity=0.760 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecc-cCC-CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCcccccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTT-WMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDS 80 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~-w~~-~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~ 80 (310)
++++|+++++.+++++||+|+|+ +|.+ |++ +++|+||+.+||||++|+++||++|+|+++|++|+|..++ +.|++
T Consensus 278 ~e~~v~~~i~~~~~~~IP~d~~~-lD~~~~~~~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~--~~~~e 354 (772)
T COG1501 278 DEDEVLEFIDEMRERDIPLDVFV-LDIDFWMDNWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDS--PLFKE 354 (772)
T ss_pred cHHHHHHHHhhcccccCcceEEE-EeehhhhccccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCC--chHHH
Confidence 47899999999999999999976 5997 996 9999999999999999999999999999999999999987 47999
Q ss_pred ccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHH-HHHhHHhCCccEEEecCCCCcccCCCCCCCCCCCcCCC
Q 021612 81 GSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS-LVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRG 159 (310)
Q Consensus 81 ~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~-~~~~~~~~Gvdg~w~D~~e~~~~~~~~~~lp~~~~~~g 159 (310)
++++|||||+++|+++.+..||+.++++|||||+|++||.+ ..+.+.++||||||+|+|||..++.. ..+.|
T Consensus 355 ~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~-------~~~~g 427 (772)
T COG1501 355 AIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGD-------GFGNG 427 (772)
T ss_pred HHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCcccccc-------ccccc
Confidence 99999999999999999999999999999999999999994 55678899999999999999877531 01111
Q ss_pred CCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHHhhhc
Q 021612 160 DDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLS 239 (310)
Q Consensus 160 ~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~~~l~ 239 (310)
..+.++||+|++++++|+|+++++..+++|||++|||+++|+|||+++|+||+.++|++|+.+|+++|++|||
T Consensus 428 -------~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~aG~Q~~~~~WsGD~~s~wd~l~~si~~~Ls~~~s 500 (772)
T COG1501 428 -------IDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGYAGSQRYAAHWSGDNRSSWDSLRESIPAGLSLSLS 500 (772)
T ss_pred -------cCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEecccccceeccceeCCccccchHHHHhhHHhhhchhcc
Confidence 2678999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCC--CCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHHHHHHHHh
Q 021612 240 GQPFSGPDIGGFDG--NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 305 (310)
Q Consensus 240 G~p~~g~DIgGf~g--~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~ 305 (310)
|+||||+|||||.| ++++|||+||+|+|+|+|+||+|+. ....|+||.|++++.+++|++|+--.
T Consensus 501 Gi~~wg~DiGGF~g~~~~~~EL~~RW~q~g~F~P~~R~H~~-d~~~rePW~~~e~~~~i~r~~~~lR~ 567 (772)
T COG1501 501 GIPFWGHDIGGFTGGDDPTAELYIRWYQFGAFSPIFRLHGN-DNIPREPWAFGEETEEIVREYIQLRY 567 (772)
T ss_pred CCccccccccccCCCCCCCHHHHHHHHHHHhcCchhhhhCC-CCCCCCCccCChhHHHHHHHHHHHHH
Confidence 99999999999999 6899999999999999999999998 45789999999999999999997543
No 15
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=9.6e-73 Score=528.82 Aligned_cols=275 Identities=25% Similarity=0.383 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC----------------------CcceeeCC-CCCCChHHHHHHHHhCCC
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD----------------------FVVSLLTR-HRFPDPKSLAADLHLNGF 59 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~----------------------~~~ft~d~-~~Fpdp~~mi~~L~~~G~ 59 (310)
.++||+++|++|++++||||+|++ | +|++ +.+++|++ ++||||++||++||++|+
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~l-D-~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~ 99 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVI-E-QWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGV 99 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEE-e-cccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCC
Confidence 579999999999999999999754 5 3442 34667774 799999999999999999
Q ss_pred eEEEEeCCccccCCC-----ccccccccccceeEecCCCCceeE-eecCCCccCCCCCCHHHHHHHHHHHHhHH-hCCcc
Q 021612 60 KAIWMLDPGIKHEDG-----YFVYDSGSKIDVWIQKADGTPFIG-EVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVD 132 (310)
Q Consensus 60 k~~~~v~P~i~~~~~-----~~~y~~~~~~~~~v~~~~g~~~~~-~~w~G~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvd 132 (310)
|+++|++|+|..+.. +..|.++.+++|||++.+|+++.+ .+|||.+++||||||+|++||.+++++++ +.|||
T Consensus 100 kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~~Gid 179 (340)
T cd06597 100 KVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDELGID 179 (340)
T ss_pred EEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999976421 224678999999999999998875 68999999999999999999999999988 59999
Q ss_pred EEEecCCCCcccCCCCCCCCCCCcCCCCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcc
Q 021612 133 GIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYA 212 (310)
Q Consensus 133 g~w~D~~e~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~ 212 (310)
|||+|++|+.. +.+..+.. | ..+.++||+|++++++++++++++. ++|||++|||+++|+|||+
T Consensus 180 g~w~D~~E~~~--------~~~~~~~~-----g-~~~~~~hN~y~~~~~~~~~e~~~~~--~~r~filtRs~~~Gsqry~ 243 (340)
T cd06597 180 GFKTDGGEHVW--------GRDLHFRD-----G-RRGDEMRNTYPNHYVRAYNDFLRRA--KKDGVTFSRAGYTGAQAHG 243 (340)
T ss_pred EEEecCCCccC--------CCCceecC-----C-CcHHHhhcccHHHHHHHHHHHHHhc--cCCcEEEEecccCccCCCc
Confidence 99999999742 11222221 1 1467899999999999999998764 7899999999999999999
Q ss_pred eeeCCCCCCCchHHHHHHHHHHHhhhcCCCccccCCCCCCCC-CChhHHHHHHHhhhhccccccCCCCCC-----CCCCC
Q 021612 213 ATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGN-ATPRLFGRWMGIGAMFPFCRGHTESDA-----IDHEP 286 (310)
Q Consensus 213 ~~w~GD~~ssW~~L~~~i~~~l~~~l~G~p~~g~DIgGf~g~-~~~EL~~RW~Q~g~f~P~~r~h~~~~~-----~~~eP 286 (310)
++|+||+.|+|++||.+|+++|++||+|+||+|+|||||.++ +++|||+||+|+|||+|+||+|+..+. ..|||
T Consensus 244 ~~WsGD~~s~W~~L~~~i~~~L~~glsG~~~~g~DIgGF~g~~~~~EL~~RW~Q~g~F~P~~R~H~~~~~~~~~~~~~ep 323 (340)
T cd06597 244 IFWAGDENSTFGAFRWSVFAGLSASASGIPYWGWDLAGFTGDVPTAELYVRSTAMAAFVPIMQYHSEFNGHSSPNEDRTP 323 (340)
T ss_pred ceecCCCCCCHHHHHHHHHHHHHHhhcCCCcCCCccCCcCCCCCCHHHHHHHHHHhhcchhhhhccCCCCCCcCcCCccC
Confidence 999999999999999999999999999999999999999998 899999999999999999999998653 48999
Q ss_pred cccChhhHH
Q 021612 287 WSFGEEVLF 295 (310)
Q Consensus 287 w~~~~~~~~ 295 (310)
|.|++++.+
T Consensus 324 w~~~~~~~~ 332 (340)
T cd06597 324 WNIAERTGE 332 (340)
T ss_pred CcccCcCCC
Confidence 999987654
No 16
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=100.00 E-value=1.6e-70 Score=532.50 Aligned_cols=295 Identities=36% Similarity=0.729 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCC-cccccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDG-YFVYDS 80 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~-~~~y~~ 80 (310)
..++|+++++++++++||+|+++ +|.+|++ +++|+||+++||||++|++.||++|+|++++++|+|..++. |..|++
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~-iD~~~~~~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~ 119 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIW-IDDDYQDGYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDE 119 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEE-E-GGGSBTTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHH
T ss_pred CHHHHHHHHHHHHHcCCCcccee-ccccccccccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhh
Confidence 36899999999999999999975 6999987 89999999999999999999999999999999999999876 778999
Q ss_pred ccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhC-CccEEEecCCCCcccCCCCCCCCCCCcCCC
Q 021612 81 GSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYN-GVDGIWNDMNEPAVFKSVTKTMPESNIHRG 159 (310)
Q Consensus 81 ~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~-Gvdg~w~D~~e~~~~~~~~~~lp~~~~~~g 159 (310)
++++++++++++|+++++.+|+|.+++|||+||++++||.++++++++. ||||||+|++||..+. ...++|.+..+.+
T Consensus 120 ~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~-~~~~~~~~~~~~~ 198 (441)
T PF01055_consen 120 AKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFD-SNNTLPEDAVHHD 198 (441)
T ss_dssp HHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSST-TTBSBCTTEECTT
T ss_pred HhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCccccc-ccccCcccceecC
Confidence 9999999999999999999999999999999999999999999999976 9999999999999864 3344566555443
Q ss_pred CCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHHhhhc
Q 021612 160 DDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLS 239 (310)
Q Consensus 160 ~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~~~l~ 239 (310)
. ..+.++||+|++++++++++++++..+++||+++|||+++|+|||+++|+||+.++|++|+.+|+++|++|+|
T Consensus 199 ~------~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~w~~L~~~i~~~l~~~~~ 272 (441)
T PF01055_consen 199 G------YSGYEMHNLYGLLYAKATYEALREIDPNKRPFIFSRSGWAGSQRYGGHWSGDNSSSWDGLRSSIPAMLNMGLS 272 (441)
T ss_dssp E------CEHHHHGGGHHHHHHHHHHHHHHHHSTTSC-EEEESSEETTGGGTCEEEECSSBSSHHHHHHHHHHHHHHHCT
T ss_pred C------CCchheeccccccchhhhhhhhhhccCCCCcceeecccCCCCCccceeecccccccHHHHHHHHHHHHHHhhh
Confidence 1 2578899999999999999999987789999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHHHHHHHHh
Q 021612 240 GQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 305 (310)
Q Consensus 240 G~p~~g~DIgGf~g~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~ 305 (310)
|+|++|+|||||.+.+++|||+||+|+|||+|+||+|+..+...++||.|++++++++|++|+.+.
T Consensus 273 G~~~~g~DigG~~~~~~~eL~~RW~q~~~f~p~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~~lRy 338 (441)
T PF01055_consen 273 GYPFWGSDIGGFSGDPDEELYIRWYQFGAFSPLFRNHGNKPSNPREPWSFGDEAEDIFRRAIRLRY 338 (441)
T ss_dssp T-SSEEEEET-SBSTSSHHHHHHHHHHHTTSSSEEEEESTTSSB-SGGGSSCTHHHHHHHHHHHHH
T ss_pred hcceecCcccccCCCCCHHHHHHHHHhhcCCcceeecCCcccccccccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999977666678999999999999999998764
No 17
>PRK10426 alpha-glucosidase; Provisional
Probab=100.00 E-value=1.8e-68 Score=533.74 Aligned_cols=278 Identities=23% Similarity=0.394 Sum_probs=245.7
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCC----------cceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCC
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDF----------VVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHED 73 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~----------~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~ 73 (310)
+++|+++++++|+++||||+| |+| +|++. .+|+||+++||||++|+++||++|+|+++|++|+|..+
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i-~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~- 296 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGI-WAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASD- 296 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEE-EEe-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCC-
Confidence 678999999999999999996 456 78752 25899999999999999999999999999999999984
Q ss_pred CccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHH-hHHhCCccEEEecCCCCcccCCCCCCCC
Q 021612 74 GYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVK-DFIYNGVDGIWNDMNEPAVFKSVTKTMP 152 (310)
Q Consensus 74 ~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~-~~~~~Gvdg~w~D~~e~~~~~~~~~~lp 152 (310)
+.+|++++++|||+++++|+++++.+|++.+++||||||+|++||+++++ .+.+.||||||+|+||+ +|
T Consensus 297 -~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~---------~p 366 (635)
T PRK10426 297 -GDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEY---------LP 366 (635)
T ss_pred -CHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCC---------CC
Confidence 46899999999999999999999999999999999999999999999886 56689999999999995 45
Q ss_pred CCCcCCCCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcce-eeCCCCCCCch---HHHH
Q 021612 153 ESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA-TWTGDNVSNWE---HLHM 228 (310)
Q Consensus 153 ~~~~~~g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~-~w~GD~~ssW~---~L~~ 228 (310)
.+..+.. | ..+.++||+|+++++++++|++++..+.+|||++|||+++|+|||++ +|+||+.++|+ +|+.
T Consensus 367 ~d~~~~~-----g-~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~ltRsg~aGsQry~~~~WsGD~~ssW~~~d~L~~ 440 (635)
T PRK10426 367 TDAYLHN-----G-VSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGYTGSQKYSTLFWAGDQNVDWSLDDGLAS 440 (635)
T ss_pred CcceeeC-----C-CCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEEEEccccCCcCCccccccCCCCCCcCcChhHHHH
Confidence 4444321 1 25678999999999999999999876677999999999999999985 89999999995 8999
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCC----CCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccCh--hhHHHHHHHHH
Q 021612 229 SISMVLQLGLSGQPFSGPDIGGFDG----NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGE--EVLFCSSIVII 302 (310)
Q Consensus 229 ~i~~~l~~~l~G~p~~g~DIgGf~g----~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~--~~~~~~r~~i~ 302 (310)
+|+++|++||||+||||+|||||.+ .+++|||+||+|+|||+|+||+|+.. .++|||.|.. ++.+.++++++
T Consensus 441 ~I~~~Ls~glsG~~~~g~DIGGF~~~~~~~~~~EL~~RW~Q~gaF~P~~R~H~~~--~~~epw~f~~~~~~~~~~~~~~~ 518 (635)
T PRK10426 441 VVPAALSLGMSGHGLHHSDIGGYTTLFGMKRTKELLLRWCEFSAFTPVMRTHEGN--RPGDNWQFDSDAETIAHFARMTR 518 (635)
T ss_pred HHHHHHHHHhcCcCccccccCCCcCcCCCCCCHHHHHHHHHHhcCCceeecCCCC--CCCCCCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999974 48999999999999999999999865 4789999954 44455555554
No 18
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=4.3e-68 Score=491.02 Aligned_cols=263 Identities=23% Similarity=0.397 Sum_probs=237.6
Q ss_pred hHHHHHHHHHHHhHHhCCcceEEEeeecccCC-CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCcccccc
Q 021612 2 ILIREFVRFAGHFVRKVYPVMLYGWILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDS 80 (310)
Q Consensus 2 ~~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~ 80 (310)
+.+++|+++++++++++||+|+|+ +|.+|++ +++|+||+++||||++|+++||++|+|+++|++|+|..++ ..|++
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~-iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s--~~~~e 103 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIE-IDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDS--ENFRE 103 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEE-eCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCC--HHHHh
Confidence 468999999999999999999975 5999998 8999999999999999999999999999999999999865 47899
Q ss_pred ccccceeEecCCC-CceeEeecCCCccCCCCCCHHHHHHHHHHHHhHH-hCCccEEEecCCCCcccCCCCCCCCCCCcCC
Q 021612 81 GSKIDVWIQKADG-TPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHR 158 (310)
Q Consensus 81 ~~~~~~~v~~~~g-~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~e~~~~~~~~~~lp~~~~~~ 158 (310)
+.++++||++++| .++.+.+|+|.++++|||||+|++||.+++++++ +.||||||+|++||+. +|.+..+.
T Consensus 104 ~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~-------~p~~~~~~ 176 (303)
T cd06592 104 AVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEASY-------LPQDYVTE 176 (303)
T ss_pred hhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCccc-------CCcccccC
Confidence 9999999999988 7888999999999999999999999999999988 8999999999999974 44443332
Q ss_pred CCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcceeeCCCCCCCchHH---HHHHHHHHH
Q 021612 159 GDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHL---HMSISMVLQ 235 (310)
Q Consensus 159 g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L---~~~i~~~l~ 235 (310)
.+..+||.|..++++++++. ++++++||+|+|+|+++.+|+||+.++|+++ +.+|+++|+
T Consensus 177 ---------~~~~~~n~y~~~~~~~~~~~--------~~~~~~Rsg~~g~~~~~~~w~GD~~s~W~~~~gl~~~i~~~L~ 239 (303)
T cd06592 177 ---------DPLLNPDEYTRLYAEMVAEF--------GDLIEVRAGWRSQGLPLFVRMMDKDSSWGGDNGLKSLIPTALT 239 (303)
T ss_pred ---------CcccCHHHHHHHHHHHHHhh--------ccceEEEeeeecCCCCeeEEcCCCCCCCCCCcCHHHHHHHHHH
Confidence 13457999999998887541 3899999999999888899999999999877 999999999
Q ss_pred hhhcCCCccccC-CCCCCC-------CCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHH
Q 021612 236 LGLSGQPFSGPD-IGGFDG-------NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSS 298 (310)
Q Consensus 236 ~~l~G~p~~g~D-IgGf~g-------~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r 298 (310)
+||||+|||++| ||||.+ .+++|||+||+|+|+|+|+||+| ++||.|++++++++|
T Consensus 240 ~~lsG~~~w~~D~iGGf~~~~~~~~~~~~~EL~~RW~q~g~f~P~~R~h-------~~PW~~~~e~~~~~~ 303 (303)
T cd06592 240 MGLLGYPFVLPDMIGGNAYGGNSDDELPDKELYIRWLQLSAFLPVMQFS-------IAPWQYDDEVVEIAK 303 (303)
T ss_pred hhccCCcccCCCccCCccccccccCCCCCHHHHHHHHHHHHhChhhhcc-------cCCccCCHHHHHhhC
Confidence 999999999999 899864 37999999999999999999999 699999999998875
No 19
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=1e-67 Score=486.11 Aligned_cols=256 Identities=25% Similarity=0.399 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC----------CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccC
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD----------FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHE 72 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~----------~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~ 72 (310)
.++||+++|++||+++||||+|+ +|.+|+. +++||||+++||||++|+++||++|+|+++|++|+|..+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~-lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~ 101 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLV-IDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIR 101 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEE-EecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccC
Confidence 57899999999999999999975 5999964 578999999999999999999999999999999998776
Q ss_pred CCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHH-HhHHhCCccEEEecCCCCcccCCCCCCC
Q 021612 73 DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV-KDFIYNGVDGIWNDMNEPAVFKSVTKTM 151 (310)
Q Consensus 73 ~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~-~~~~~~Gvdg~w~D~~e~~~~~~~~~~l 151 (310)
..+..|++.++ +..++..+ +...++|||||+|++||.+.+ +.+.++||||||+|+|||+.+..
T Consensus 102 ~~~~~y~~~~~-~~~~~~~~----------~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~~~~~----- 165 (292)
T cd06595 102 AHEDQYPEMAK-ALGVDPAT----------EGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGNRTRT----- 165 (292)
T ss_pred CCcHHHHHHHH-hcCCCccc----------CCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCccccc-----
Confidence 54455664221 11111111 123578999999999876665 55668999999999999875410
Q ss_pred CCCCcCCCCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHH
Q 021612 152 PESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSIS 231 (310)
Q Consensus 152 p~~~~~~g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~ 231 (310)
+ + +.+...||.+ .|++.++ +++|||++|||+++|+|||+++|+||+.|+|++|+.+|+
T Consensus 166 ~------~-------~~~~~~~~~~-------~y~~~~~--~~~r~f~lsRs~~~G~qry~~~WsGD~~s~W~~l~~~i~ 223 (292)
T cd06595 166 P------G-------LDPLWWLNHV-------HYLDSAR--NGRRPLIFSRWAGLGSHRYPIGFSGDTIISWASLAFQPY 223 (292)
T ss_pred C------C-------cchHHHHHHH-------HHHHhhc--cCCCcEEEEeecccCCCcCCCccCCCcccCHHHHHHHHH
Confidence 0 0 0122334443 3444433 679999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCccccCCCCCCC-CCChhHHHHHHHhhhhccccccCCCCCC-CCCCCcccChhhHHHH
Q 021612 232 MVLQLGLSGQPFSGPDIGGFDG-NATPRLFGRWMGIGAMFPFCRGHTESDA-IDHEPWSFGEEVLFCS 297 (310)
Q Consensus 232 ~~l~~~l~G~p~~g~DIgGf~g-~~~~EL~~RW~Q~g~f~P~~r~h~~~~~-~~~ePw~~~~~~~~~~ 297 (310)
.+|++|++|+||||+|||||.+ ++++|||+||+|+|+|+|+||+|+...+ .+||||.|++++++++
T Consensus 224 ~~l~~~~sG~p~~g~DiGGF~~~~~~~ELy~RW~Q~gaf~P~~R~H~~~~~~~~~ePW~~g~~~~~~~ 291 (292)
T cd06595 224 FTATASNIGYGYWSHDIGGHMLGVTDPELYTRWIQFGVFSPILRLHSTKNPFNEKEPWLYEEEASKIM 291 (292)
T ss_pred HHHHHHhcCCCcCCCccCCCCCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCccCcccCcHHHHhh
Confidence 9999999999999999999999 6999999999999999999999998765 5899999999998876
No 20
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=100.00 E-value=5.6e-65 Score=462.27 Aligned_cols=239 Identities=38% Similarity=0.700 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-Ccce--eeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-FVVS--LLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYD 79 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~~f--t~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~ 79 (310)
.+++|+++++++++++||+|+++ +|.+|+. +++| +||+++||||++|+++||++|+|+++|++|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~-lD~~~~~~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v---------- 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFV-LDDDYTDGYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI---------- 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEE-ECcccccCCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH----------
Confidence 57899999999999999999975 6999998 8888 99999999999999999999999999999998
Q ss_pred cccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhH-HhCCccEEEecCCCCcccCCCCCCCCCCCcCC
Q 021612 80 SGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF-IYNGVDGIWNDMNEPAVFKSVTKTMPESNIHR 158 (310)
Q Consensus 80 ~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~-~~~Gvdg~w~D~~e~~~~~~~~~~lp~~~~~~ 158 (310)
++||.++++++ .+.||||||+|+|||..++... ...
T Consensus 91 ------------------------------------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~-------~~~ 127 (265)
T cd06589 91 ------------------------------------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNI-------FTG 127 (265)
T ss_pred ------------------------------------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCcc-------ccC
Confidence 89999999987 6899999999999998764321 111
Q ss_pred CCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHHhhh
Q 021612 159 GDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGL 238 (310)
Q Consensus 159 g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~~~l 238 (310)
+. .+...+.++||+|+++++|++++++++..+++|||++|||+++|+|||+++|+||+.++|+.||.+|+++|++||
T Consensus 128 ~~---~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~Gsqry~~~W~GD~~stW~~l~~~i~~~l~~~l 204 (265)
T cd06589 128 GV---VGRVKHEEMHNAYPLLYAEATYEALRKNSKNKRPFILSRSGYAGSQRYAGMWSGDNTSTWGYLRSQIPAGLTMSM 204 (265)
T ss_pred Cc---CCCccHHHHcchhHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccccCcCceeCCcccCCHHHHHHHHHHHHhhhc
Confidence 10 012357899999999999999999998878999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCCCCC-CCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHH
Q 021612 239 SGQPFSGPDIGGFDG-NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSS 298 (310)
Q Consensus 239 ~G~p~~g~DIgGf~g-~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r 298 (310)
+|+||+|+|||||.+ ++++|||+||+|+|+|+|+||+|+......+|||.|++++.+++|
T Consensus 205 ~G~~~~g~DigGf~~~~~~~EL~~RW~Q~g~F~P~~R~H~~~~~~~~epw~~~~~~~~~~r 265 (265)
T cd06589 205 SGIPFVGSDIGGFTGGDPSAELYVRWFQFGAFTPIMRFHSWNSPKDTEPWAFDEEVTAIIR 265 (265)
T ss_pred cCCcccCCCcCCCCCCCCCHHHHHHHHHHhcCCcceecCCCCCCCCcCCCCcCHHHHHhhC
Confidence 999999999999999 799999999999999999999999987778999999999988875
No 21
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-60 Score=470.06 Aligned_cols=291 Identities=35% Similarity=0.649 Sum_probs=263.6
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSG 81 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~ 81 (310)
.+.++++++++++++|||+|++ |.|.|||+ +++||.|+.+||+.+++++.||++|+|++++++|+|+.+..|..|+++
T Consensus 309 nls~~~dvv~~~~~agiPld~~-~~DiDyMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g 387 (805)
T KOG1065|consen 309 NLSVVRDVVENYRAAGIPLDVI-VIDIDYMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRG 387 (805)
T ss_pred cHHHHHHHHHHHHHcCCCccee-eeehhhhhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhh
Confidence 3678999999999999999996 57999999 999999999999999999999999999999999999999888899999
Q ss_pred cccceeEecCCCCc-eeEeecCCCccCCCCCCHHHHHHHHHHHHhHH-hCCccEEEecCCCCcccCCCCCCCCCCCcCCC
Q 021612 82 SKIDVWIQKADGTP-FIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHRG 159 (310)
Q Consensus 82 ~~~~~~v~~~~g~~-~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~e~~~~~~~~~~lp~~~~~~g 159 (310)
.+++++|++.+|++ ++|++|||..+||||+||++..||.++++.+. .+++||+|+||||+++|+.+. +- .....+
T Consensus 388 ~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmnE~snf~~pp-~~--~~~~~~ 464 (805)
T KOG1065|consen 388 VAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMNEPSNFPSPP-IN--PTLDNG 464 (805)
T ss_pred hhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEECCCcccCCCCC-cc--cccccc
Confidence 99999999999988 89999999999999999999999999999988 489999999999999987421 10 111122
Q ss_pred CCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHHhhhc
Q 021612 160 DDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLS 239 (310)
Q Consensus 160 ~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~~~l~ 239 (310)
+ +.. ...+.||+|++..+.|++.++.+.. ++|+++++||+|+|+.||+++|.||+.++|+.|+.+|+.||.++|+
T Consensus 465 ~--~~~--~tyd~~~lyg~~~aiat~~a~~~v~-~kr~~i~srsTf~g~g~y~~hwlgdn~~~w~~L~~sI~gml~fnl~ 539 (805)
T KOG1065|consen 465 D--LYA--KTYDTHNLYGYSEAIATHQALVDVP-GKRSFILSRSTFVGSGRYAGHWLGDNTARWEDLQTSISGMLEFNLF 539 (805)
T ss_pred c--ccc--cchhhhhhHhHHHhhhhhccceecc-ccccccccccceecccccceeecccccceehhccccchhhhccccc
Confidence 1 110 1157899999999999999988775 9999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHHHHHHH
Q 021612 240 GQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIA 303 (310)
Q Consensus 240 G~p~~g~DIgGf~g~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~i~~ 303 (310)
|+|+.|+|||||.+.+++|||.||+|+|||+|+||+|+......+||..++. +.+++|+++-.
T Consensus 540 Gip~Vg~Dicgf~~~~~eELc~RW~q~gaF~Pf~R~hn~~~~~~qe~~~~~s-v~~a~r~~~~~ 602 (805)
T KOG1065|consen 540 GIPMVGSDICGFLGPPTEELCLRWLQLGAFYPFSRNHNSPGEPRQEPYTWSS-VAEAARNALTL 602 (805)
T ss_pred CCCccchhhhcCCCCCCHHHHHHHHHhccCCchhhccCCCCCcccChhhHHH-HHHHHHHhhhh
Confidence 9999999999999999999999999999999999999998888999999986 78888877654
No 22
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=3.2e-43 Score=310.53 Aligned_cols=210 Identities=24% Similarity=0.393 Sum_probs=176.7
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccccccc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSK 83 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~~~ 83 (310)
+..+.++|+.|+++++|++-|+ -++++.. -|.|.+++++.++++|++..+|.. ++
T Consensus 44 ~~~a~~~~~~y~~~~~plgw~l-pndgyg~---------~y~~l~~~~~~~~~~g~~~glwt~------~~--------- 98 (261)
T cd06596 44 TDDARKVADKYKENDMPLGWML-PNDGYGC---------GYENLKEVVDYLHANGVETGLWTQ------SG--------- 98 (261)
T ss_pred hhhHHHHHHHHHhcCCCceeec-cCCCCcc---------hHHHHHHHHHHHHHcCCccccccc------cc---------
Confidence 4568899999999999999863 4555543 126799999999999999888722 10
Q ss_pred cceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCCCCcccCCCCCCCCCCCcCCCCCCC
Q 021612 84 IDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEI 163 (310)
Q Consensus 84 ~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~e~~~~~~~~~~lp~~~~~~g~~~~ 163 (310)
+ .+.-+.....|+...++|-.= .|
T Consensus 99 --l---------------------------------~~~~~ev~~~g~~~~k~Dv~w-----------------~g---- 122 (261)
T cd06596 99 --L---------------------------------RDIAKEVGAAGVRARKTDVAW-----------------VG---- 122 (261)
T ss_pred --h---------------------------------hhhhhhhccCCceEEeccchh-----------------hc----
Confidence 0 122233445688888888421 11
Q ss_pred CCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCCCcceeeCCCCCCCchHHHHHHHHHHHhhhcCCCc
Q 021612 164 GGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPF 243 (310)
Q Consensus 164 ~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~r~~~~w~GD~~ssW~~L~~~i~~~l~~~l~G~p~ 243 (310)
.+-.|++.++|++|+++++. +++|||++|||+|+|+|||+++|+||+.++|++|+.+|+++|++||||+||
T Consensus 123 --------~gy~~~l~~~ka~yeg~~~~-~~~RpfiltRsg~aGsQRy~~~WsGD~~stWe~Lr~sI~~~L~~gLsG~p~ 193 (261)
T cd06596 123 --------AGYSFALNGVKAAADGIESN-SNARPFIVTVDGWAGTQRYAGIWTGDQSGSWEYIRFHIPTYIGSGLSGQPN 193 (261)
T ss_pred --------cchhHHHHHHHHHHHHHHhC-CCCCCEEEEecCccccCCCCCccCCCCcCcHHHHHHHHHHHHHHHhcCCCc
Confidence 13467889999999999875 889999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHHHHHHHH
Q 021612 244 SGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 304 (310)
Q Consensus 244 ~g~DIgGf~g~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~ 304 (310)
||+|||||.|+ ++|||+||+|+|+|+|+||+|+..++..||||.|++++++++|++|+.-
T Consensus 194 ~G~DIGGF~g~-~~EL~vRW~Q~gaF~P~~R~h~~~~~~~rEPW~fge~~~~i~R~~l~LR 253 (261)
T cd06596 194 TTSDVDGIFGG-SPETYTRDLQWKAFTPVLMTMSGWAANDKQPWVFGEPYTSINRDYLKLK 253 (261)
T ss_pred CccccCcCCCC-CHHHHHHHHHHHHhhhhhhhccCCCCCCCCCeeCCHHHHHHHHHHHHHH
Confidence 99999999998 9999999999999999999999877789999999999999999999754
No 23
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=99.50 E-value=5.1e-13 Score=127.25 Aligned_cols=129 Identities=20% Similarity=0.291 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHhHHhCCcceEEEeeecccCC--------CcceeeCCCCCCC-hHHHHHHHHhCCCeEEEEeCCcc-cc
Q 021612 2 ILIREFVRFAGHFVRKVYPVMLYGWILTTWMD--------FVVSLLTRHRFPD-PKSLAADLHLNGFKAIWMLDPGI-KH 71 (310)
Q Consensus 2 ~~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~--------~~~ft~d~~~Fpd-p~~mi~~L~~~G~k~~~~v~P~i-~~ 71 (310)
+..++|++.|+...+.|+. .++ +|++|.. .++++.|+++||+ .+.+++.+|++|+|+.+|+.|.+ +.
T Consensus 55 ~~e~~i~~~a~~~~~~G~e--~fv-iDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~ 131 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYE--YFV-IDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSP 131 (394)
T ss_dssp --HHHHHHHHHHHHHHT-S--EEE-E-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEES
T ss_pred CCHHHHHHHHHHHHHhCCE--EEE-EcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccc
Confidence 4578999999999998875 444 5999974 4889999999999 89999999999999999999975 44
Q ss_pred CCCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHH-hCCccEEEecCCCC
Q 021612 72 EDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEP 141 (310)
Q Consensus 72 ~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~e~ 141 (310)
++. +|++- .++.++.++.....+ ....++|+++|++++|..+.+.+++ +.|||++|+|+|..
T Consensus 132 ~S~--l~~~h--Pdw~l~~~~~~~~~~----r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~ 194 (394)
T PF02065_consen 132 DSD--LYREH--PDWVLRDPGRPPTLG----RNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRD 194 (394)
T ss_dssp SSC--HCCSS--BGGBTCCTTSE-ECB----TTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-
T ss_pred hhH--HHHhC--ccceeecCCCCCcCc----ccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccC
Confidence 443 45432 345555443222111 2345799999999999999998876 79999999999974
No 24
>PLN03231 putative alpha-galactosidase; Provisional
Probab=98.92 E-value=1.4e-07 Score=88.57 Aligned_cols=198 Identities=17% Similarity=0.155 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHHhHHhCCc---ceEEEeeecccCC---------------------CcceeeCCCCCCC------hHHHH
Q 021612 2 ILIREFVRFAGHFVRKVYP---VMLYGWILTTWMD---------------------FVVSLLTRHRFPD------PKSLA 51 (310)
Q Consensus 2 ~~~~~v~~~~~~~~~~~iP---~d~~~~~d~~w~~---------------------~~~ft~d~~~Fpd------p~~mi 51 (310)
|..++|++.|+ +.+.|+- ..- +.+|+.|+. ++.+.-|++|||+ .+.+.
T Consensus 15 i~E~~i~~~Ad-~v~~gL~~~GY~Y-v~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lA 92 (357)
T PLN03231 15 ISEEQFLENAK-IVSETLKPHGYEY-VVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIA 92 (357)
T ss_pred cCHHHHHHHHH-HHHcchHHhCCEE-EEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHH
Confidence 56778888887 5555543 222 335888852 5678999999997 89999
Q ss_pred HHHHhCCCeEEEEeCCccccCC---CccccccccccceeEecCC-CCceeEeecCCC-ccCCCCCCHHHHHHHHHHHHhH
Q 021612 52 ADLHLNGFKAIWMLDPGIKHED---GYFVYDSGSKIDVWIQKAD-GTPFIGEVWPGP-CVFPDYTQSKVRSWWGSLVKDF 126 (310)
Q Consensus 52 ~~L~~~G~k~~~~v~P~i~~~~---~~~~y~~~~~~~~~v~~~~-g~~~~~~~w~G~-~~~~Dft~p~a~~ww~~~~~~~ 126 (310)
+.+|++|+|+.+.++|.+.... .++..-.--..++-....| ..+.....|... -.-+|..++.|++|+....+.+
T Consensus 93 DyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~gaq~y~~~~a~~f 172 (357)
T PLN03231 93 AKVHALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSEGGKLFIQSLYDQY 172 (357)
T ss_pred HHHHhCCcceEEEecCCccchhcccCCccCCCCcccccccchhhhccccccccccccccccccccchhHHHHHHHHHHHH
Confidence 9999999999999999887532 1111100000011000000 000011223322 2368999999999999988888
Q ss_pred HhCCccEEEecCCCCcccCCCCCCCCCCCcCCCCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCC
Q 021612 127 IYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFI 206 (310)
Q Consensus 127 ~~~Gvdg~w~D~~e~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~ 206 (310)
-+-|||.+|.|.+.+.. . .+ ...|. ++.++|++ ..||+++|=+-..
T Consensus 173 A~WGVDylK~D~c~~~~----------------~-------~~---~~~y~-----~m~~AL~~---tGRpIv~Slc~g~ 218 (357)
T PLN03231 173 ASWGIDFIKHDCVFGAE----------------N-------PQ---LDEIL-----TVSKAIRN---SGRPMIYSLSPGD 218 (357)
T ss_pred HHhCCCEEeecccCCCC----------------c-------cc---HHHHH-----HHHHHHHH---hCCCeEEEecCCC
Confidence 89999999999653210 0 00 11232 44566664 4689998876321
Q ss_pred CC--------CCcceee--CCCCCCCchHHHHHHHHHHH
Q 021612 207 GS--------QRYAATW--TGDNVSNWEHLHMSISMVLQ 235 (310)
Q Consensus 207 G~--------~r~~~~w--~GD~~ssW~~L~~~i~~~l~ 235 (310)
+. ..++..| ++|...+|+.+...+...-.
T Consensus 219 ~~~~~~~~~i~~~an~WR~s~DI~d~W~~v~~~~~~~~~ 257 (357)
T PLN03231 219 GATPGLAARVAQLVNMYRVTGDDWDDWKYLVKHFDVARD 257 (357)
T ss_pred CCCchhhhhhhhhcCcccccCCcccchhhHHHHHHHHHH
Confidence 11 1223344 59999999998877766533
No 25
>PLN02808 alpha-galactosidase
Probab=98.72 E-value=4.5e-07 Score=86.02 Aligned_cols=163 Identities=18% Similarity=0.173 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHhHHhCCc---ceEEEeeecccCC-----CcceeeCCCCCCC-hHHHHHHHHhCCCeEEEEeCCccccC
Q 021612 2 ILIREFVRFAGHFVRKVYP---VMLYGWILTTWMD-----FVVSLLTRHRFPD-PKSLAADLHLNGFKAIWMLDPGIKHE 72 (310)
Q Consensus 2 ~~~~~v~~~~~~~~~~~iP---~d~~~~~d~~w~~-----~~~ft~d~~~Fpd-p~~mi~~L~~~G~k~~~~v~P~i~~~ 72 (310)
|..+.|++.|+.+.+.|+. ..-++ +|+.|+. .+.+..|+++||+ .+.+.+.+|++|+|+.++.++.....
T Consensus 46 i~e~~i~~~a~~mv~~Gl~~~Gy~yv~-iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGiy~~~G~~tC 124 (386)
T PLN02808 46 INETLIKQTADAMVSSGLAALGYKYIN-LDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGIYSDAGTLTC 124 (386)
T ss_pred CCHHHHHHHHHHHHHcchHHhCCEEEE-EcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEEEecCCcccc
Confidence 5678999999998776655 55554 5999975 6789999999998 79999999999999999988763332
Q ss_pred CCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCCCCcccCCCCCCCC
Q 021612 73 DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMP 152 (310)
Q Consensus 73 ~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~e~~~~~~~~~~lp 152 (310)
.. ..|.+..+...-.+.+.+-|||.+|.|.+-...
T Consensus 125 ~~------------------------------------~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~--------- 159 (386)
T PLN02808 125 SK------------------------------------TMPGSLGHEEQDAKTFASWGIDYLKYDNCENTG--------- 159 (386)
T ss_pred CC------------------------------------CCCcchHHHHHHHHHHHHhCCCEEeecCcCCCC---------
Confidence 21 112234444444556668999999999863210
Q ss_pred CCCcCCCCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCC------CCcceee--CCCCCCCch
Q 021612 153 ESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGS------QRYAATW--TGDNVSNWE 224 (310)
Q Consensus 153 ~~~~~~g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~------~r~~~~w--~GD~~ssW~ 224 (310)
...+..|. ++.++|++ ..||+++|=+.|... ..++..| ++|...+|+
T Consensus 160 -----------------~~~~~~y~-----~m~~AL~~---tGRpi~~slc~wg~~~p~~w~~~~~n~WR~s~Di~d~W~ 214 (386)
T PLN02808 160 -----------------TSPQERYP-----KMSKALLN---SGRPIFFSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWD 214 (386)
T ss_pred -----------------ccHHHHHH-----HHHHHHHH---hCCCeEEEecCCCCCCHHHHHHhhcCcccccCCcccchh
Confidence 01123343 23455553 368998885543311 1112333 589999999
Q ss_pred HHHHHHHHHHH
Q 021612 225 HLHMSISMVLQ 235 (310)
Q Consensus 225 ~L~~~i~~~l~ 235 (310)
.+...+...-.
T Consensus 215 ~v~~~~~~~~~ 225 (386)
T PLN02808 215 SMTSRADQNDR 225 (386)
T ss_pred hHHHHHHhhhh
Confidence 88887765543
No 26
>PLN02692 alpha-galactosidase
Probab=98.70 E-value=2e-06 Score=82.09 Aligned_cols=164 Identities=18% Similarity=0.155 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHhHHhCCc---ceEEEeeecccCC-----CcceeeCCCCCCC-hHHHHHHHHhCCCeEEEEeCCccccC
Q 021612 2 ILIREFVRFAGHFVRKVYP---VMLYGWILTTWMD-----FVVSLLTRHRFPD-PKSLAADLHLNGFKAIWMLDPGIKHE 72 (310)
Q Consensus 2 ~~~~~v~~~~~~~~~~~iP---~d~~~~~d~~w~~-----~~~ft~d~~~Fpd-p~~mi~~L~~~G~k~~~~v~P~i~~~ 72 (310)
+..+.|++.|+.+.+.|+. ..-++ +|+.|+. .+.+..|+++||+ .+.+.+.+|++|+|+.++.++.....
T Consensus 70 i~E~~i~~~ad~~~~~gl~~~Gy~yv~-iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKfGIy~d~G~~tC 148 (412)
T PLN02692 70 IDEKMIKETADALVSTGLSKLGYTYVN-IDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKLGIYSDAGYFTC 148 (412)
T ss_pred cCHHHHHHHHHHHHhccchhcCcEEEE-EcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCceEEEecCCcccc
Confidence 4678899999988777765 45544 5999974 6789999999999 89999999999999999988764332
Q ss_pred CCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCCCCcccCCCCCCCC
Q 021612 73 DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMP 152 (310)
Q Consensus 73 ~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~e~~~~~~~~~~lp 152 (310)
.. ..|.+..+...-.+.+.+-|||.+|.|.+-...
T Consensus 149 ~~------------------------------------~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~--------- 183 (412)
T PLN02692 149 SK------------------------------------TMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDG--------- 183 (412)
T ss_pred CC------------------------------------CCCCchHHHHHHHHHHHhcCCCEEeccccCCCC---------
Confidence 11 112234445555556668999999999863210
Q ss_pred CCCcCCCCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCCC------Ccceee--CCCCCCCch
Q 021612 153 ESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQ------RYAATW--TGDNVSNWE 224 (310)
Q Consensus 153 ~~~~~~g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~~------r~~~~w--~GD~~ssW~ 224 (310)
. .....|. ++.+++++ ..||+++|=+.|.-.. .++..| ++|...+|+
T Consensus 184 -------~----------~~~~~y~-----~m~~AL~~---tGRpI~~SlC~wg~~~p~~w~~~~~n~WR~s~DI~d~W~ 238 (412)
T PLN02692 184 -------S----------KPTVRYP-----VMTRALMK---AGRPIFFSLCEWGDMHPALWGSKVGNSWRTTNDISDTWD 238 (412)
T ss_pred -------c----------chhHHHH-----HHHHHHHH---hCCCeEEEecCCCcCChhhhhhhcCCccccccccccchH
Confidence 0 0112333 23455654 3589998855443222 223344 599999999
Q ss_pred HHHHHHHHHHHh
Q 021612 225 HLHMSISMVLQL 236 (310)
Q Consensus 225 ~L~~~i~~~l~~ 236 (310)
.+...+......
T Consensus 239 sv~~~~~~~~~~ 250 (412)
T PLN02692 239 SMISRADMNEVY 250 (412)
T ss_pred hHHHHHHHHHHH
Confidence 888777554433
No 27
>PLN02229 alpha-galactosidase
Probab=98.69 E-value=1.2e-06 Score=83.99 Aligned_cols=163 Identities=17% Similarity=0.134 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHhHHhCCc---ceEEEeeecccCC-----CcceeeCCCCCCC-hHHHHHHHHhCCCeEEEEeCCccccC
Q 021612 2 ILIREFVRFAGHFVRKVYP---VMLYGWILTTWMD-----FVVSLLTRHRFPD-PKSLAADLHLNGFKAIWMLDPGIKHE 72 (310)
Q Consensus 2 ~~~~~v~~~~~~~~~~~iP---~d~~~~~d~~w~~-----~~~ft~d~~~Fpd-p~~mi~~L~~~G~k~~~~v~P~i~~~ 72 (310)
|..+.|++.|+.+.+.|+. .+-++ +|+.|+. .+.+..|+++||+ .+.+.+.+|++|+|+.++.++++...
T Consensus 77 i~E~~i~~~ad~~v~~Gl~~~Gy~yv~-iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC 155 (427)
T PLN02229 77 INETVIKETADALVSTGLADLGYIHVN-IDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTC 155 (427)
T ss_pred cCHHHHHHHHHHHHHhHHHhCCCEEEE-EcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCccc
Confidence 4678899999987665544 44444 5999974 5789999999998 89999999999999999999887765
Q ss_pred CCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCCCCcccCCCCCCCC
Q 021612 73 DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMP 152 (310)
Q Consensus 73 ~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~e~~~~~~~~~~lp 152 (310)
.+| ||. .++...+ .+.+-+-|||.+|.|.+....
T Consensus 156 ~~~--------------------------pGS---~g~e~~D--------A~~fA~WGVDylK~D~C~~~~--------- 189 (427)
T PLN02229 156 QVR--------------------------PGS---LFHEVDD--------ADIFASWGVDYLKYDNCYNLG--------- 189 (427)
T ss_pred CCC--------------------------CCC---ccHHHHH--------HHHHHHcCCCEEEecCCCCCC---------
Confidence 431 111 1111111 234557999999999874210
Q ss_pred CCCcCCCCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcccCCCC------CCcceee--CCCCCCCch
Q 021612 153 ESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGS------QRYAATW--TGDNVSNWE 224 (310)
Q Consensus 153 ~~~~~~g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~------~r~~~~w--~GD~~ssW~ 224 (310)
......|+ ++.+++++ ..||+++|=+.|.-. ..++..| +||...+|+
T Consensus 190 -----------------~~~~~~y~-----~m~~AL~~---tGRpI~~SlC~WG~~~p~~w~~~~~n~WR~s~DI~d~W~ 244 (427)
T PLN02229 190 -----------------IKPIERYP-----PMRDALNA---TGRSIFYSLCEWGVDDPALWAGKVGNSWRTTDDINDTWA 244 (427)
T ss_pred -----------------cchhHHHH-----HHHHHHHh---hCCCcEEEecCCCCCCHHHHHHhhcCeeeccCCcccccc
Confidence 00122343 23455654 468998885443221 1234445 599999999
Q ss_pred HHHHHHHHHHHh
Q 021612 225 HLHMSISMVLQL 236 (310)
Q Consensus 225 ~L~~~i~~~l~~ 236 (310)
++...+...-..
T Consensus 245 sv~~i~~~~~~~ 256 (427)
T PLN02229 245 SMTTIADLNNKW 256 (427)
T ss_pred cHHHHHHHHHHH
Confidence 988877654443
No 28
>PLN02899 alpha-galactosidase
Probab=98.66 E-value=1.9e-06 Score=85.06 Aligned_cols=193 Identities=17% Similarity=0.170 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHHhHHhCCc---ceEEEeeecccCC------------------CcceeeCCCCCCC------hHHHHHHH
Q 021612 2 ILIREFVRFAGHFVRKVYP---VMLYGWILTTWMD------------------FVVSLLTRHRFPD------PKSLAADL 54 (310)
Q Consensus 2 ~~~~~v~~~~~~~~~~~iP---~d~~~~~d~~w~~------------------~~~ft~d~~~Fpd------p~~mi~~L 54 (310)
|..++|++.|+ +.+.|+- ..- |.+|+.|+. ++.+..|++|||+ .+.+.+.+
T Consensus 45 I~E~~i~~~Ad-~vs~GLk~~GY~Y-VnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLvPDp~RFPSs~~g~GmK~LADYV 122 (633)
T PLN02899 45 VSEEEFLQNAE-IVSQRLLPFGYEY-VVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIPDPGRWPSSRGGKGFTEVAEKV 122 (633)
T ss_pred CCHHHHHHHHH-HHHcchHhhCCeE-EEEccccccccccccccccccccccCCCCCCccCcccCCCCccCCCcHHHHHHH
Confidence 45667777776 3444432 122 335889963 3568899999996 79999999
Q ss_pred HhCCCeEEEEeCCccccCC---Ccccccc-------ccccceeEecCCCCceeEeecCCCc-cCCCCCCHHHHHHHHHHH
Q 021612 55 HLNGFKAIWMLDPGIKHED---GYFVYDS-------GSKIDVWIQKADGTPFIGEVWPGPC-VFPDYTQSKVRSWWGSLV 123 (310)
Q Consensus 55 ~~~G~k~~~~v~P~i~~~~---~~~~y~~-------~~~~~~~v~~~~g~~~~~~~w~G~~-~~~Dft~p~a~~ww~~~~ 123 (310)
|++|+|+.+.+++.+.... ..+.... +...++-.++- +.+-....|...+ --+|.+.+.+++++....
T Consensus 123 HskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DI-a~~~~tC~w~~~g~~~vDa~~~~g~a~~~Sla 201 (633)
T PLN02899 123 HAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDI-ALKERACAWMSHGFMSVNTKLGAGKAFLRSLY 201 (633)
T ss_pred HhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhc-cccccccccCCCCcccccccccchhhhhHHHH
Confidence 9999999999999876421 1111000 00011111110 1111112232211 136888899999999888
Q ss_pred HhHHhCCccEEEecCCCCcccCCCCCCCCCCCcCCCCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEEcc
Q 021612 124 KDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRA 203 (310)
Q Consensus 124 ~~~~~~Gvdg~w~D~~e~~~~~~~~~~lp~~~~~~g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs 203 (310)
+.+-+-|||.+|.|..-+.. . .. ..| +++.++|++ ..||+++|=|
T Consensus 202 ~tfAsWGVDyLKyD~c~~~~------------~-----------~~----~ey-----~~ms~AL~a---TGRPIvySLs 246 (633)
T PLN02899 202 DQYAEWGVDFVKHDCVFGDD------------F-----------DL----EEI-----TYVSEVLKE---LDRPIVYSLS 246 (633)
T ss_pred HHHHHhCCCEEEEcCCCCCC------------C-----------Ch----HHH-----HHHHHHHHH---hCCCeEEEec
Confidence 88889999999999642210 0 00 112 345666764 4699999876
Q ss_pred cCCCCC----------Ccceee--CCCCCCCchHHHHHHHHHH
Q 021612 204 GFIGSQ----------RYAATW--TGDNVSNWEHLHMSISMVL 234 (310)
Q Consensus 204 ~~~G~~----------r~~~~w--~GD~~ssW~~L~~~i~~~l 234 (310)
- |.. .++..| +||...+|..+...+..+-
T Consensus 247 p--G~~~~p~wa~~v~~~aNmWRitgDI~D~W~sV~~~~d~~~ 287 (633)
T PLN02899 247 P--GTSATPTMAKEVSGLVNMYRITGDDWDTWGDVAAHFDVSR 287 (633)
T ss_pred C--CcccchhhhhhhhccCccceecCCcccchHHHHHHHHHHH
Confidence 3 322 223344 4899999998887765543
No 29
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=98.07 E-value=1.3e-05 Score=77.87 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCC--------CcceeeCCCCCCC-hHHHHHHHHhCCCeEEEEeCCccc-cCC
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMD--------FVVSLLTRHRFPD-PKSLAADLHLNGFKAIWMLDPGIK-HED 73 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~--------~~~ft~d~~~Fpd-p~~mi~~L~~~G~k~~~~v~P~i~-~~~ 73 (310)
.+++++.++...+-+ +..++ +|++|.. -+||-.|.++||. .++|++.++++|+++.+|+.|.+- .++
T Consensus 308 ~e~ile~vk~akk~g--vE~Fv-lDDGwfg~rndd~~slGDWlv~seKfPsgiE~li~~I~e~Gl~fGIWlePemvs~dS 384 (687)
T COG3345 308 EEEILENVKEAKKFG--VELFV-LDDGWFGGRNDDLKSLGDWLVNSEKFPSGIEELIEAIAENGLIFGIWLEPEMVSEDS 384 (687)
T ss_pred HHHHHHHHHHHhhcC--eEEEE-EccccccccCcchhhhhceecchhhccccHHHHHHHHHHcCCccceeecchhcccch
Confidence 478888888776655 66655 5999983 5899999999999 899999999999999999999764 454
Q ss_pred CccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHH-hCCccEEEecCCC
Q 021612 74 GYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 140 (310)
Q Consensus 74 ~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~e 140 (310)
+ +|+ ...+++|| .+|.|.... -+.-.+|++||..+....+.+..+. ..-||.++-|||-
T Consensus 385 d--lfr--qHPDWvvk-~~G~p~~~~---Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdmnr 444 (687)
T COG3345 385 D--LFR--QHPDWVVK-VNGYPLMAG---RNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDMNR 444 (687)
T ss_pred H--HHh--hCCCeEEe-cCCcccccc---ccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHhCc
Confidence 3 666 35678887 567664421 1345567777777766555543333 4456666666663
No 30
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.0056 Score=58.73 Aligned_cols=130 Identities=18% Similarity=0.130 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhHHhCCcceE-EEeeecccC----------CCcceeeCCCCCCC-hHHHHHHHHhCCCeEEEEeCCccc
Q 021612 3 LIREFVRFAGHFVRKVYPVML-YGWILTTWM----------DFVVSLLTRHRFPD-PKSLAADLHLNGFKAIWMLDPGIK 70 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~-~~~~d~~w~----------~~~~ft~d~~~Fpd-p~~mi~~L~~~G~k~~~~v~P~i~ 70 (310)
..+|+.+..+++++.||--=. .|| ..++. ++..+..-....-| .+.+|++.|++|+++..|+.|+..
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~-~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~ 140 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVW-NDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRM 140 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEe-cCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhccc
Confidence 467899999999999987322 233 32332 22222222333334 489999999999999999999875
Q ss_pred cCC--CccccccccccceeEecCCCCceeEeecCC--CccCCCCCCHHHHHHHHHHHHhHH-hCCccEEEecCC
Q 021612 71 HED--GYFVYDSGSKIDVWIQKADGTPFIGEVWPG--PCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMN 139 (310)
Q Consensus 71 ~~~--~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G--~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~ 139 (310)
... .+.. ...........|..+.- -.| ...++|=.+|++++|..+.+..++ ++.|||+-+|.-
T Consensus 141 a~~~s~~~~----~~p~~~~~~~~~~~~~~--~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~ 208 (418)
T COG1649 141 APPTSPLTK----RHPHWLTTKRPGWVYVR--HQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDY 208 (418)
T ss_pred CCCCChhHh----hCCCCcccCCCCeEEEe--cCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceeccee
Confidence 432 1111 11111222222322221 112 567899999999999999998877 699999999954
No 31
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=97.04 E-value=0.0028 Score=51.48 Aligned_cols=85 Identities=21% Similarity=0.301 Sum_probs=57.1
Q ss_pred hHHHHHHHHhCCCeEEEEeCCccccCCCccccccccccceeEecCCCCceeEeecCCC-ccCCCCCCHHHHHHHHHHHHh
Q 021612 47 PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGP-CVFPDYTQSKVRSWWGSLVKD 125 (310)
Q Consensus 47 p~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~-~~~~Dft~p~a~~ww~~~~~~ 125 (310)
..++|+.+|++|+|++.-++..... . .++ ...++++++++|++..+...... -...-++ ..-++....+++.
T Consensus 46 lge~v~a~h~~Girv~ay~~~~~d~-~---~~~--~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~n-s~Y~e~~~~~i~E 118 (132)
T PF14871_consen 46 LGEQVEACHERGIRVPAYFDFSWDE-D---AAE--RHPEWFVRDADGRPMRGERFGYPGWYTCCLN-SPYREFLLEQIRE 118 (132)
T ss_pred HHHHHHHHHHCCCEEEEEEeeecCh-H---HHH--hCCceeeECCCCCCcCCCCcCCCCceecCCC-ccHHHHHHHHHHH
Confidence 3899999999999999988876222 1 222 45678899999986322221111 1123333 3455777788888
Q ss_pred HHh-CCccEEEecC
Q 021612 126 FIY-NGVDGIWNDM 138 (310)
Q Consensus 126 ~~~-~Gvdg~w~D~ 138 (310)
+++ +.+||+++|+
T Consensus 119 i~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 119 ILDRYDVDGIFFDI 132 (132)
T ss_pred HHHcCCCCEEEecC
Confidence 874 9999999996
No 32
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.011 Score=55.45 Aligned_cols=192 Identities=23% Similarity=0.287 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHhHHhCCc---ceEEEeeecccCC-----CcceeeCCCCCCC-hHHHHHHHHhCCCeEEEEeCCccccC
Q 021612 2 ILIREFVRFAGHFVRKVYP---VMLYGWILTTWMD-----FVVSLLTRHRFPD-PKSLAADLHLNGFKAIWMLDPGIKHE 72 (310)
Q Consensus 2 ~~~~~v~~~~~~~~~~~iP---~d~~~~~d~~w~~-----~~~ft~d~~~Fpd-p~~mi~~L~~~G~k~~~~v~P~i~~~ 72 (310)
|+.+-+.+.|+.+.+.|.- ..-| .+|+-|.+ .+-..-|+++||+ .+.+.+.+|.+|+|+.+..+-+-...
T Consensus 57 IsE~l~~~~ad~mvseG~~~vGY~yi-~iDDCW~e~~Rd~~grLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~TC 135 (414)
T KOG2366|consen 57 ISEQLFKEMADAMVSEGLADVGYEYI-NIDDCWSEVTRDSDGRLVADPSRFPSGIKALADYVHSKGLKLGIYSDAGNFTC 135 (414)
T ss_pred hhHHHHHHHHHHHHHhHHHhcCcEEE-echhhhhhhccCCccccccChhhcccchhhhhhchhhcCCceeeeeccCchhh
Confidence 5666778888888888843 3333 35888987 2346778999999 58999999999999987655442221
Q ss_pred CCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCCCCcccCCCCCCCC
Q 021612 73 DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMP 152 (310)
Q Consensus 73 ~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~e~~~~~~~~~~lp 152 (310)
.+| ||. +..- ..--+.+.+-|||..++|.+.....
T Consensus 136 ~g~--------------------------PGS---~~~e--------~~DA~tFA~WgvDylKlD~C~~~~~-------- 170 (414)
T KOG2366|consen 136 AGY--------------------------PGS---LGHE--------ESDAKTFADWGVDYLKLDGCFNNLI-------- 170 (414)
T ss_pred ccC--------------------------Ccc---cchh--------hhhhhhhHhhCCcEEeccccccccc--------
Confidence 111 121 0000 0111356689999999998763211
Q ss_pred CCCcCCCCCCCCCccccchhhhhhHHHHHHHHHHHhhhhcCCCCcEEEE-ccc---CCC---------CCCcceee--CC
Q 021612 153 ESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLT-RAG---FIG---------SQRYAATW--TG 217 (310)
Q Consensus 153 ~~~~~~g~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~s-Rs~---~~G---------~~r~~~~w--~G 217 (310)
...-.|+.+ . .+++ ...||++.| ++- ..+ .+.+...| .+
T Consensus 171 ------------------~~~~~Yp~m-s----~aLN---~tGrpi~ySlC~W~~~~~~~~~~pny~~i~~~~N~WR~~d 224 (414)
T KOG2366|consen 171 ------------------TMPEGYPIM-S----RALN---NTGRPIFYSLCSWPAYHPGLPHHPNYKNISTICNSWRTTD 224 (414)
T ss_pred ------------------cccccchhH-H----HHHh---ccCCceEEEeccCcccccCccCCCcchhhhhhhccccchh
Confidence 011233332 1 2333 357999999 542 112 22233344 48
Q ss_pred CCCCCchHHHHHHHHHHHhhhcCCCccccCCCCCC-------CC--CChhHHHHHHHhhhh
Q 021612 218 DNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFD-------GN--ATPRLFGRWMGIGAM 269 (310)
Q Consensus 218 D~~ssW~~L~~~i~~~l~~~l~G~p~~g~DIgGf~-------g~--~~~EL~~RW~Q~g~f 269 (310)
|+..+|..+.+.+...-...-.=.|.-|+ ||+. |+ -+-|+|. .|++..
T Consensus 225 DI~dtW~Sv~~I~d~~~~nqd~~~~~agP--g~WNDpDmL~iGN~G~s~e~y~--~qf~lW 281 (414)
T KOG2366|consen 225 DIQDTWKSVDSIIDYICWNQDRIAPLAGP--GGWNDPDMLEIGNGGMSYEEYK--GQFALW 281 (414)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhhccccCC--CCCCChhHhhcCCCCccHHHHH--HHHHHH
Confidence 88899987777666555566666777887 7765 22 3667776 455544
No 33
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=96.76 E-value=0.014 Score=59.45 Aligned_cols=128 Identities=13% Similarity=0.140 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCCC---------------------cceeeCCCCCC--------------Ch
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMDF---------------------VVSLLTRHRFP--------------DP 47 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~---------------------~~ft~d~~~Fp--------------dp 47 (310)
..+.|++-++.+.+.++|+.-+ ++|++|++. ..|+=|+ +|| ..
T Consensus 218 t~~~I~~~l~~l~~~g~p~~~v-iIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~f~~n~-KF~~~~~~~~~~~~~~~Gl 295 (758)
T PLN02355 218 TAEGVKQGLESLEKGGVTPKFV-IIDDGWQSVGMDPTGIECLADNSANFANRLTHIKENH-KFQKNGKEGHRVDDPALGL 295 (758)
T ss_pred CHHHHHHHHHHHHhCCCCccEE-EEeccccccccccccccccccccchhhhhhccccccc-cccccccccccccCCCCcH
Confidence 5688999999999999999995 579999872 1233343 666 34
Q ss_pred HHHHHHHHh-CCCeEE-EEe---------CCccccCCCccccccccc-----cceeEecCCCCceeEeecCCCccCCCCC
Q 021612 48 KSLAADLHL-NGFKAI-WML---------DPGIKHEDGYFVYDSGSK-----IDVWIQKADGTPFIGEVWPGPCVFPDYT 111 (310)
Q Consensus 48 ~~mi~~L~~-~G~k~~-~~v---------~P~i~~~~~~~~y~~~~~-----~~~~v~~~~g~~~~~~~w~G~~~~~Dft 111 (310)
+..++.+|+ .|+|.| +|. .|....-+ .|+.... .|+....++... -..-++....+
T Consensus 296 k~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~---~Y~~~~~~p~~spGv~~~~~~~a~--d~i~~~G~glv--- 367 (758)
T PLN02355 296 GHIVTEIKEKHSLKYVYVWHAITGYWGGVKPGVAGME---HYESKMSYPVSSPGVQSNEPCDAL--ESITTNGLGLV--- 367 (758)
T ss_pred HHHHHHHHhhcCCcEEEEeeeecceecCcCCCCcccc---cccccccccccCCcccccCcchhh--hhcccCceecc---
Confidence 778888886 588864 552 23322111 1322211 111111111000 00001112233
Q ss_pred CHH-HHHHHHHHHHhHHhCCccEEEecCCC
Q 021612 112 QSK-VRSWWGSLVKDFIYNGVDGIWNDMNE 140 (310)
Q Consensus 112 ~p~-a~~ww~~~~~~~~~~Gvdg~w~D~~e 140 (310)
+|+ +..+|.+.+..|.+.||||.|.|...
T Consensus 368 ~Pe~~~~FY~~~hsyL~s~GVDgVKVD~Q~ 397 (758)
T PLN02355 368 NPEKVFSFYNELHSYLASAGIDGVKVDVQN 397 (758)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEchhh
Confidence 455 56789888888889999999999764
No 34
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=96.76 E-value=0.013 Score=58.68 Aligned_cols=130 Identities=14% Similarity=0.190 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCC------C--cc-eeeCCCCCCC---hHHHHHHHHhCCCeEEEEeCC-ccc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMD------F--VV-SLLTRHRFPD---PKSLAADLHLNGFKAIWMLDP-GIK 70 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~------~--~~-ft~d~~~Fpd---p~~mi~~L~~~G~k~~~~v~P-~i~ 70 (310)
++.|.+-++.+++.||-. +|+-.-+.. | .+ +..|+ +|-+ .++||+++|++|+||++=+.+ ++.
T Consensus 27 l~gi~~~Ldyl~~LGv~~---i~L~Pi~~~~~~~~gY~~~dy~~vd~-~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~s 102 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDA---LWLLPFFQSPLRDDGYDVSDYRAILP-EFGTIDDFKDFVDEAHARGMRVIIDLVLNHTS 102 (539)
T ss_pred HHHHHHhHHHHHHCCCCE---EEECCCcCCCCCCCCCCcccccccCh-hhCCHHHHHHHHHHHHHCCCEEEEEeccCcCC
Confidence 345666677777777654 343322211 1 22 45653 5654 478999999999999887654 333
Q ss_pred cCCCccccc------cccccceeEecCCCCcee----------EeecC--------------CCccCCCCCCHHHHHHHH
Q 021612 71 HEDGYFVYD------SGSKIDVWIQKADGTPFI----------GEVWP--------------GPCVFPDYTQSKVRSWWG 120 (310)
Q Consensus 71 ~~~~~~~y~------~~~~~~~~v~~~~g~~~~----------~~~w~--------------G~~~~~Dft~p~a~~ww~ 120 (310)
.+.. .|. +..-.++|+....++.+. ...|. ....-+|+.||++++...
T Consensus 103 ~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~ 180 (539)
T TIGR02456 103 DQHP--WFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVH 180 (539)
T ss_pred CCCH--HHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHH
Confidence 3221 111 112234555332221111 01121 012347888999999999
Q ss_pred HHHHhHHhCCccEEEecCC
Q 021612 121 SLVKDFIYNGVDGIWNDMN 139 (310)
Q Consensus 121 ~~~~~~~~~Gvdg~w~D~~ 139 (310)
+.++.+++.|||||=+|.-
T Consensus 181 ~~~~~w~~~GvDGfRlDav 199 (539)
T TIGR02456 181 DVMRFWLDLGVDGFRLDAV 199 (539)
T ss_pred HHHHHHHHcCCCEEEEecH
Confidence 9999888999999999974
No 35
>PRK10785 maltodextrin glucosidase; Provisional
Probab=96.69 E-value=0.018 Score=58.39 Aligned_cols=128 Identities=11% Similarity=0.090 Sum_probs=75.1
Q ss_pred HHHHHHHHHhHHhCCcceEEEeeecccCC-----C---cceeeCCCCCCC---hHHHHHHHHhCCCeEEEEeCC-ccccC
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWILTTWMD-----F---VVSLLTRHRFPD---PKSLAADLHLNGFKAIWMLDP-GIKHE 72 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-----~---~~ft~d~~~Fpd---p~~mi~~L~~~G~k~~~~v~P-~i~~~ 72 (310)
+-|.+=++.+++.||-. +|+-.-... | .-+..|+ +|-+ .++|++++|++|+||++=+.+ +...+
T Consensus 179 ~GI~~kLdYL~~LGv~~---I~L~Pif~s~s~hgYd~~Dy~~iDp-~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~ 254 (598)
T PRK10785 179 DGISEKLPYLKKLGVTA---LYLNPIFTAPSVHKYDTEDYRHVDP-QLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDS 254 (598)
T ss_pred HHHHHHHHHHHHcCCCE---EEeCCcccCCCCCCcCcccccccCc-ccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCC
Confidence 45666667777877654 344332222 1 1245553 5544 579999999999999887654 33332
Q ss_pred CCcc-ccc----------cccccceeEecCCCCceeEeecCCCccC--CCCCCHHHHHHHHH----HHHhHHh--CCccE
Q 021612 73 DGYF-VYD----------SGSKIDVWIQKADGTPFIGEVWPGPCVF--PDYTQSKVRSWWGS----LVKDFIY--NGVDG 133 (310)
Q Consensus 73 ~~~~-~y~----------~~~~~~~~v~~~~g~~~~~~~w~G~~~~--~Dft~p~a~~ww~~----~~~~~~~--~Gvdg 133 (310)
..++ .+. +..-.++|.-+.+|. + ..|.|.... +|+.||++++...+ .++..++ .||||
T Consensus 255 ~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~-~--~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG 331 (598)
T PRK10785 255 HPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGR-A--LDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDG 331 (598)
T ss_pred CHHHHHhhccccccccCCCCCcceeeEECCCCC-c--CCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcE
Confidence 2110 010 112234554443332 1 346555444 46779999998764 5666665 49999
Q ss_pred EEecCC
Q 021612 134 IWNDMN 139 (310)
Q Consensus 134 ~w~D~~ 139 (310)
|=+|..
T Consensus 332 ~RlDva 337 (598)
T PRK10785 332 WRLDVV 337 (598)
T ss_pred EEEecH
Confidence 999976
No 36
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=96.66 E-value=0.018 Score=58.65 Aligned_cols=133 Identities=17% Similarity=0.126 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCCC---------------------cceeeCCC--------CCCC-hHHHHH
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMDF---------------------VVSLLTRH--------RFPD-PKSLAA 52 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~---------------------~~ft~d~~--------~Fpd-p~~mi~ 52 (310)
..+.|++-++.+.+.++|+..+ ++|++|++. ..|+=|++ .||. .+.+++
T Consensus 214 t~~~I~~~l~~l~e~gip~~~v-iIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~f~en~KF~~~~~~~~fp~Glk~~V~ 292 (775)
T PLN02219 214 TAEGVDEGLKSLSEGGTPPKFL-IIDDGWQQIENKEKDENCVVQEGAQFATRLTGIKENAKFQKNDQKNEQVSGLKHVVD 292 (775)
T ss_pred CHHHHHHHHHHHHhCCCCceEE-EEccCccccccccccccccccccchhhhhhccccccccccccccccCCCCcHHHHHH
Confidence 4678999999999999999995 579999861 12332221 3565 588999
Q ss_pred HHHh-CCCeEE-EEeC-----CccccCC-CccccccccccceeEecCC---CCceeE--eecCCCccCCCCCCHHHHHHH
Q 021612 53 DLHL-NGFKAI-WMLD-----PGIKHED-GYFVYDSGSKIDVWIQKAD---GTPFIG--EVWPGPCVFPDYTQSKVRSWW 119 (310)
Q Consensus 53 ~L~~-~G~k~~-~~v~-----P~i~~~~-~~~~y~~~~~~~~~v~~~~---g~~~~~--~~w~G~~~~~Dft~p~a~~ww 119 (310)
.+++ .|+|.| +|.. =.|..+. ....|+.... |-+..++ ..+-+. ..-.+....+| .+++.++|
T Consensus 293 ~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~--~p~~spg~~~~~pd~a~d~l~~~G~glV~--P~~~~~FY 368 (775)
T PLN02219 293 DAKQRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSALA--YPVQSPGVLGNQPDIVMDSLSVHGLGLVN--PKKVFNFY 368 (775)
T ss_pred HHHhccCCcEEEEeeeccceecCcCCCCccccccccccc--ccccCCCccccCcchhhhhhhhCCccccC--HHHHHHHH
Confidence 9986 588854 5521 1122221 1112332211 1111111 011000 00011123332 24567899
Q ss_pred HHHHHhHHhCCccEEEecCCC
Q 021612 120 GSLVKDFIYNGVDGIWNDMNE 140 (310)
Q Consensus 120 ~~~~~~~~~~Gvdg~w~D~~e 140 (310)
.+.+..|.+.||||.|.|...
T Consensus 369 d~~hsyLas~GVDgVKVDvQ~ 389 (775)
T PLN02219 369 NELHAYLASCGVDGVKVDVQN 389 (775)
T ss_pred HHHHHHHHHcCCCEEEEchhh
Confidence 999888889999999999754
No 37
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.54 E-value=0.032 Score=56.89 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=60.7
Q ss_pred ceeeCCCCCCC---hHHHHHHHHhCCCeEEEEeCC-ccccCCC-ccccccccccceeEecCCCCceeEeecCCCccCCCC
Q 021612 36 VSLLTRHRFPD---PKSLAADLHLNGFKAIWMLDP-GIKHEDG-YFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDY 110 (310)
Q Consensus 36 ~ft~d~~~Fpd---p~~mi~~L~~~G~k~~~~v~P-~i~~~~~-~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Df 110 (310)
.|..+ .+|.. .++||+.+|++|++|++-+.+ +...+.. ...|+. ..-|+..++.. .. ...| | ..-+|+
T Consensus 195 y~~~~-~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~--~~~y~~~~~~~-~~-~~~w-~-~~~~~~ 267 (613)
T TIGR01515 195 YYAPT-SRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAEFDG--TPLYEHKDPRD-GE-HWDW-G-TLIFDY 267 (613)
T ss_pred Ccccc-cccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccchhhccCC--CcceeccCCcc-Cc-CCCC-C-CceecC
Confidence 35554 47775 478999999999999988665 4443321 111110 01122221110 00 1123 2 235799
Q ss_pred CCHHHHHHHHHHHHhHH-hCCccEEEecCC
Q 021612 111 TQSKVRSWWGSLVKDFI-YNGVDGIWNDMN 139 (310)
Q Consensus 111 t~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~ 139 (310)
.+|+++++..+.++.++ +.|||||-+|..
T Consensus 268 ~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v 297 (613)
T TIGR01515 268 GRPEVRNFLVANALYWAEFYHIDGLRVDAV 297 (613)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEcCH
Confidence 99999999999999888 589999999974
No 38
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=96.50 E-value=0.043 Score=55.15 Aligned_cols=131 Identities=13% Similarity=0.210 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCC------C---cceeeCCCCCCC---hHHHHHHHHhCCCeEEEEeCC-ccc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMD------F---VVSLLTRHRFPD---PKSLAADLHLNGFKAIWMLDP-GIK 70 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~------~---~~ft~d~~~Fpd---p~~mi~~L~~~G~k~~~~v~P-~i~ 70 (310)
++.|.+-++.+++.||-. +|+-.-+.. | .-+..| .+|-. .++||+++|++|+||++=+.+ +.+
T Consensus 32 l~gi~~~ldyl~~lGv~~---i~l~P~~~~~~~~~gY~~~d~~~id-~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s 107 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDA---IWLTPFYVSPQVDNGYDVANYTAID-PTYGTLDDFDELVAQAKSRGIRIILDMVFNHTS 107 (551)
T ss_pred HHHHHHhhHHHHhCCCCE---EEECCCCCCCCCCCCCCcccCCCcC-cccCCHHHHHHHHHHHHHCCCEEEEEECCCCcc
Confidence 456677778888888754 343322211 1 123444 34544 579999999999999887654 233
Q ss_pred cCCCccccccc-----cccceeEecC--CCC---cee----Eee--cCC------------CccCCCCCCHHHHHHHHHH
Q 021612 71 HEDGYFVYDSG-----SKIDVWIQKA--DGT---PFI----GEV--WPG------------PCVFPDYTQSKVRSWWGSL 122 (310)
Q Consensus 71 ~~~~~~~y~~~-----~~~~~~v~~~--~g~---~~~----~~~--w~G------------~~~~~Dft~p~a~~ww~~~ 122 (310)
.+.. -|.++ .-.++|+-.. .+. .+. +.. |.. ...-+|+.||++++...+.
T Consensus 108 ~~~~--wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~ 185 (551)
T PRK10933 108 TQHA--WFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKV 185 (551)
T ss_pred Cchh--HHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHH
Confidence 2211 11111 1123333211 000 000 011 111 1235678899999999999
Q ss_pred HHhHHhCCccEEEecCCC
Q 021612 123 VKDFIYNGVDGIWNDMNE 140 (310)
Q Consensus 123 ~~~~~~~Gvdg~w~D~~e 140 (310)
++.+++.|||||=+|.-.
T Consensus 186 ~~~W~~~GvDGfRlDa~~ 203 (551)
T PRK10933 186 CEFWADRGVDGLRLDVVN 203 (551)
T ss_pred HHHHHHCCCcEEEEcchh
Confidence 999889999999999653
No 39
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=96.46 E-value=0.033 Score=56.71 Aligned_cols=127 Identities=17% Similarity=0.155 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHhHHhCCcceEEEeeecccCCCc--------------------ceeeCCCCCC-------ChHHHHHHH
Q 021612 2 ILIREFVRFAGHFVRKVYPVMLYGWILTTWMDFV--------------------VSLLTRHRFP-------DPKSLAADL 54 (310)
Q Consensus 2 ~~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~--------------------~ft~d~~~Fp-------dp~~mi~~L 54 (310)
+..+.|++-++.+.+.++|+.-+ ++|++|++.. .|+=| ++|| ..+.+++.|
T Consensus 216 Vt~~~I~~~l~~l~~~g~p~~~v-IIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~~~p~~Glk~~V~~i 293 (750)
T PLN02684 216 VTQEGVEAGLKSLAAGGTPPKFV-IIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKKDDPNVGIKNIVNIA 293 (750)
T ss_pred CCHHHHHHHHHHHHhCCCCceEE-EEecccccccccccccccccccchhhhhhccCccc-cccccccCCCccHHHHHHHH
Confidence 34688999999999999999995 5799999721 13333 4665 357889998
Q ss_pred H-hCCCeEE-EEe---------CCccccCCCcccccccc-----ccceeEecCC--CCceeEeecCCCccCCCCCCH-HH
Q 021612 55 H-LNGFKAI-WML---------DPGIKHEDGYFVYDSGS-----KIDVWIQKAD--GTPFIGEVWPGPCVFPDYTQS-KV 115 (310)
Q Consensus 55 ~-~~G~k~~-~~v---------~P~i~~~~~~~~y~~~~-----~~~~~v~~~~--g~~~~~~~w~G~~~~~Dft~p-~a 115 (310)
+ +.|+|.| +|. .|....-+ .|+... ..++....++ ++... -+|. + .-+| ++
T Consensus 294 K~~~~vk~V~VWHAL~GYWGGv~P~~~~~~---~Y~s~~~~p~~s~gv~~~~p~~~~d~l~---~~g~-g---lv~P~~~ 363 (750)
T PLN02684 294 KEKHGLKYVYVWHAITGYWGGVRPGVKEME---EYGSVMKYPNVSKGVVENDPTWKTDVMT---LQGL-G---LVNPKKV 363 (750)
T ss_pred HhhcCCcEEEEEeeecccccccCCCCcchh---hccccccccccCccccccCccccccccc---cCcc-c---ccCHHHH
Confidence 7 4588854 552 23322111 122111 1122211111 11000 0111 1 2233 46
Q ss_pred HHHHHHHHHhHHhCCccEEEecCCC
Q 021612 116 RSWWGSLVKDFIYNGVDGIWNDMNE 140 (310)
Q Consensus 116 ~~ww~~~~~~~~~~Gvdg~w~D~~e 140 (310)
.++|.+.+..|.+.||||.|.|.+.
T Consensus 364 ~~FYd~~hsyL~s~GVDgVKVD~Q~ 388 (750)
T PLN02684 364 YKFYNELHSYLADAGIDGVKVDVQC 388 (750)
T ss_pred HHHHHHHHHHHHHcCCCeEEEChhh
Confidence 7889999888889999999999764
No 40
>PRK03705 glycogen debranching enzyme; Provisional
Probab=96.46 E-value=0.014 Score=59.66 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=59.0
Q ss_pred hHHHHHHHHhCCCeEEEEeCC-cccc---CCCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHH
Q 021612 47 PKSLAADLHLNGFKAIWMLDP-GIKH---EDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSL 122 (310)
Q Consensus 47 p~~mi~~L~~~G~k~~~~v~P-~i~~---~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~ 122 (310)
.++||+++|++|+||++=+.. +... +..+..++......||..+.+|.. ..|.|-+.-+++.+|+++++..+.
T Consensus 244 fk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~---~~~~g~g~~ln~~~p~Vr~~iid~ 320 (658)
T PRK03705 244 FRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDY---HNWTGCGNTLNLSHPAVVDWAIDC 320 (658)
T ss_pred HHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCc---CCCCCccCcccCCCHHHHHHHHHH
Confidence 688999999999999887543 2221 111112222222344444444421 234454456788999999999999
Q ss_pred HHhHHh-CCccEEEecCC
Q 021612 123 VKDFIY-NGVDGIWNDMN 139 (310)
Q Consensus 123 ~~~~~~-~Gvdg~w~D~~ 139 (310)
++..++ .|||||=+|..
T Consensus 321 l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 321 LRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHhCCCEEEEEcH
Confidence 998885 79999999953
No 41
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=96.17 E-value=0.011 Score=53.87 Aligned_cols=132 Identities=19% Similarity=0.274 Sum_probs=76.5
Q ss_pred HHHHHHHHHhHHhCCcceEEEeee----cc--cCCC--cc-eeeCCCCCCC---hHHHHHHHHhCCCeEEEEeCC-cccc
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWIL----TT--WMDF--VV-SLLTRHRFPD---PKSLAADLHLNGFKAIWMLDP-GIKH 71 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d----~~--w~~~--~~-ft~d~~~Fpd---p~~mi~~L~~~G~k~~~~v~P-~i~~ 71 (310)
+.|.+=++.+++.||-. +|+- .+ +..| .+ +..|+ +|-. .++||+++|++|+||++=+.+ +...
T Consensus 4 ~gi~~kLdyl~~lGv~~---I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~ 79 (316)
T PF00128_consen 4 RGIIDKLDYLKDLGVNA---IWLSPIFESPNGYHGYDPSDYYAVDP-RFGTMEDFKELVDAAHKRGIKVILDVVPNHTSD 79 (316)
T ss_dssp HHHHHTHHHHHHHTESE---EEESS-EESSSSTTTTSESEEEEEST-TTBHHHHHHHHHHHHHHTTCEEEEEEETSEEET
T ss_pred HHHHHhhHHHHHcCCCc---eecccccccccccccccceeeecccc-ccchhhhhhhhhhccccccceEEEeeecccccc
Confidence 34555566777777653 2322 22 2223 23 46664 6665 479999999999999987765 3443
Q ss_pred CCCcc----ccccccccceeEecC-------------CCCceeEeecC----C--CccCCCCCCHHHHHHHHHHHHhHHh
Q 021612 72 EDGYF----VYDSGSKIDVWIQKA-------------DGTPFIGEVWP----G--PCVFPDYTQSKVRSWWGSLVKDFIY 128 (310)
Q Consensus 72 ~~~~~----~y~~~~~~~~~v~~~-------------~g~~~~~~~w~----G--~~~~~Dft~p~a~~ww~~~~~~~~~ 128 (310)
+.... .+......++++..+ ++..+....|. . ...-+|+.||++++...+.++...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~~ 159 (316)
T PF00128_consen 80 DHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWIE 159 (316)
T ss_dssp TSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchhh
Confidence 32210 001111233443210 11122211121 1 1234678899999999998888889
Q ss_pred CCccEEEecCCC
Q 021612 129 NGVDGIWNDMNE 140 (310)
Q Consensus 129 ~Gvdg~w~D~~e 140 (310)
.|||||=+|...
T Consensus 160 ~giDGfR~D~~~ 171 (316)
T PF00128_consen 160 EGIDGFRLDAAK 171 (316)
T ss_dssp TTESEEEETTGG
T ss_pred ceEeEEEEcccc
Confidence 999999999753
No 42
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=96.14 E-value=0.029 Score=57.11 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=57.8
Q ss_pred ChHHHHHHHHhCCCeEEEEeCC-ccccCCCccccccccccceeEe-cCCCCceeEeecCCCccCCCCCCHHHHHHHHHHH
Q 021612 46 DPKSLAADLHLNGFKAIWMLDP-GIKHEDGYFVYDSGSKIDVWIQ-KADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV 123 (310)
Q Consensus 46 dp~~mi~~L~~~G~k~~~~v~P-~i~~~~~~~~y~~~~~~~~~v~-~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~ 123 (310)
+.++||+++|++|++|++=+.+ +...... ..|+.. ..++|.+ +.+|... .+.|-+.-++..+|+++++..+.+
T Consensus 230 efk~lV~~~H~~Gi~VilDvV~NH~~~~~~-~~f~~~-~~~~~~~~~~~g~~~---~~~g~~~~~~~~~~~v~~~i~~~~ 304 (605)
T TIGR02104 230 ELKQMIQALHENGIRVIMDVVYNHTYSREE-SPFEKT-VPGYYYRYNEDGTLS---NGTGVGNDTASEREMMRKFIVDSV 304 (605)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCccCCCC-CcccCC-CCCeeEEECCCCCcc---CCCcccCCcccCCHHHHHHHHHHH
Confidence 3689999999999999887654 3322111 123322 2345544 3333221 112223346788999999999999
Q ss_pred HhHH-hCCccEEEecCC
Q 021612 124 KDFI-YNGVDGIWNDMN 139 (310)
Q Consensus 124 ~~~~-~~Gvdg~w~D~~ 139 (310)
+..+ +.|||||=+|..
T Consensus 305 ~~W~~e~~iDGfR~D~~ 321 (605)
T TIGR02104 305 LYWVKEYNIDGFRFDLM 321 (605)
T ss_pred HHHHHHcCCCEEEEech
Confidence 8887 489999999965
No 43
>PLN00196 alpha-amylase; Provisional
Probab=96.14 E-value=0.11 Score=50.55 Aligned_cols=132 Identities=15% Similarity=0.119 Sum_probs=75.0
Q ss_pred HHHHHHHHHhHHhCCcceEEEeeecccC-----CC---cceeeCCCCCCC---hHHHHHHHHhCCCeEEEEeCC-ccccC
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWILTTWM-----DF---VVSLLTRHRFPD---PKSLAADLHLNGFKAIWMLDP-GIKHE 72 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d~~w~-----~~---~~ft~d~~~Fpd---p~~mi~~L~~~G~k~~~~v~P-~i~~~ 72 (310)
+.|.+-++.+++.||-. +|+-.... .| ..|..|+++|-+ .++||+++|++|+|+++=+.+ +...+
T Consensus 44 ~~i~~kldyL~~LGvta---IWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~~~ 120 (428)
T PLN00196 44 NFLMGKVDDIAAAGITH---VWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAE 120 (428)
T ss_pred HHHHHHHHHHHHcCCCE---EEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcccc
Confidence 45667777888888754 45443332 12 347777778875 578999999999999876543 22221
Q ss_pred C-----Cccccccccc---cceeEe--cCCCCce---eE--eecCCCccC--CCCCCHHHHHHHHHHHHhHH-hCCccEE
Q 021612 73 D-----GYFVYDSGSK---IDVWIQ--KADGTPF---IG--EVWPGPCVF--PDYTQSKVRSWWGSLVKDFI-YNGVDGI 134 (310)
Q Consensus 73 ~-----~~~~y~~~~~---~~~~v~--~~~g~~~---~~--~~w~G~~~~--~Dft~p~a~~ww~~~~~~~~-~~Gvdg~ 134 (310)
. .|..|..+.. .+++-. ..+.+.+ .+ ..|.+.... +|..||++++...+.++-+. +.|||||
T Consensus 121 ~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~ 200 (428)
T PLN00196 121 HKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDAW 200 (428)
T ss_pred cccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCCCCEE
Confidence 1 0111211111 111100 0000000 00 112222233 56678999999888877665 6999999
Q ss_pred EecCC
Q 021612 135 WNDMN 139 (310)
Q Consensus 135 w~D~~ 139 (310)
=+|..
T Consensus 201 RlD~a 205 (428)
T PLN00196 201 RLDFA 205 (428)
T ss_pred Eeehh
Confidence 99965
No 44
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=96.14 E-value=0.079 Score=54.21 Aligned_cols=129 Identities=13% Similarity=0.065 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCCC-c-------------------------ceeeCCCCCCC----------
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMDF-V-------------------------VSLLTRHRFPD---------- 46 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~-~-------------------------~ft~d~~~Fpd---------- 46 (310)
..+.|++-++.+++.|+|..-+ |+|++|++. . .|+=| .+|++
T Consensus 228 t~egI~~gl~~L~~~Gip~~~v-IIDDGWQsi~~d~~~~~~~~~~~~~~~g~q~~~rL~~f~en-~KF~~~~~~~~~~p~ 305 (777)
T PLN02711 228 HPQGVWEGVKGLVDGGCPPGLV-LIDDGWQSICHDEDPISDQEGMNRTVAGEQMPCRLLKFEEN-YKFRDYVSPKSLSNK 305 (777)
T ss_pred CHHHHHHHHHHHHhCCCCccEE-EEcCCcccccccCcccccccccccccccchhhhhhcccccc-ccccccccccCCCCC
Confidence 4688999999999999999995 579999971 1 12233 24533
Q ss_pred -hHHHHHHHHhC--CCeEE-EEeC-----CccccCCCccccccccccceeEecCCCC----ceeE--eecCCCccCCCCC
Q 021612 47 -PKSLAADLHLN--GFKAI-WMLD-----PGIKHEDGYFVYDSGSKIDVWIQKADGT----PFIG--EVWPGPCVFPDYT 111 (310)
Q Consensus 47 -p~~mi~~L~~~--G~k~~-~~v~-----P~i~~~~~~~~y~~~~~~~~~v~~~~g~----~~~~--~~w~G~~~~~Dft 111 (310)
.+..++.|+.+ |+|.| +|.. =.|..+.. ...+. +-++.+.+.|. +-+. ..-.+...+ -
T Consensus 306 Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~--~~~~~--~~~~p~~spg~~~~~~d~~~d~~~~~g~gl---v 378 (777)
T PLN02711 306 GMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVP--GLPES--KVVAPKLSPGLKMTMEDLAVDKIVNNGVGL---V 378 (777)
T ss_pred cHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCC--CCccc--eeeccccCcccccccccccccccccCcccc---c
Confidence 45669999995 68864 5521 11222211 00111 11111111110 0000 000011112 3
Q ss_pred CHH-HHHHHHHHHHhHHhCCccEEEecCCC
Q 021612 112 QSK-VRSWWGSLVKDFIYNGVDGIWNDMNE 140 (310)
Q Consensus 112 ~p~-a~~ww~~~~~~~~~~Gvdg~w~D~~e 140 (310)
+|+ +.++|.+.+..|.+.||||.|.|...
T Consensus 379 ~Pe~~~~FY~~~hs~Las~GVDgVKVDvQ~ 408 (777)
T PLN02711 379 PPELAYQMYEGLHSHLQSVGIDGVKVDVIH 408 (777)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEchhh
Confidence 344 56788888888889999999999653
No 45
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=96.13 E-value=0.08 Score=49.34 Aligned_cols=130 Identities=13% Similarity=0.121 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCC---C-------c-ceeeCCC---CCCChHHHHHHHHhCCCeEEEEeCCcc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMD---F-------V-VSLLTRH---RFPDPKSLAADLHLNGFKAIWMLDPGI 69 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~---~-------~-~ft~d~~---~Fpdp~~mi~~L~~~G~k~~~~v~P~i 69 (310)
.+++.++++.+.+.||-.=. +...... | . ..+-.+. -|.-++.||++.|++|+++-.|+...+
T Consensus 18 ~~~~~~~l~~l~~~~~N~V~---~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 18 KEQIDEMLDDLKSAGFNAVF---VQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEE---EEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 57888999999999965311 1221221 1 0 0111111 122348999999999999998883333
Q ss_pred ccCCCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHH-hCCccEEEecC
Q 021612 70 KHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDM 138 (310)
Q Consensus 70 ~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~ 138 (310)
...+.....+. ....+..+..|....-..-.|...++|-.+|+++++..+.++.++ ++.|||+=+|-
T Consensus 95 ~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDd 162 (311)
T PF02638_consen 95 NAPDVSHILKK--HPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDD 162 (311)
T ss_pred CCCchhhhhhc--CchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 22211111111 111122122221111101124567899999999999999999987 68999999993
No 46
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.06 E-value=0.14 Score=47.79 Aligned_cols=126 Identities=12% Similarity=0.037 Sum_probs=80.2
Q ss_pred HHHHHHHHHhHHhCCcceEEEeeecccCC--C-------cceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCc
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWILTTWMD--F-------VVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGY 75 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d~~w~~--~-------~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~ 75 (310)
+.+.++++.+.+.++---+|.+- .++.. | ....-.+....|++++++.||++|+.++..|.-+= |..
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDvK-dd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk--D~~- 88 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDVK-DDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK--DPV- 88 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEEe-cCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec--ChH-
Confidence 45666777777888876665432 12211 1 11111222347899999999999999887664331 111
Q ss_pred cccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCCC
Q 021612 76 FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 140 (310)
Q Consensus 76 ~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~e 140 (310)
.-+ +..++-+++.+|+++.. .....++|-++++++++--+.-+...+.|||.+-+|.-.
T Consensus 89 --la~-~~pe~av~~~~G~~w~d---~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIR 147 (316)
T PF13200_consen 89 --LAE-AHPEWAVKTKDGSVWRD---NEGEAWVNPYSKEVWDYNIDIAKEAAKLGFDEIQFDYIR 147 (316)
T ss_pred --Hhh-hChhhEEECCCCCcccC---CCCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEeeeee
Confidence 111 12344556666644321 112579999999999999988888889999999999754
No 47
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=95.91 E-value=0.098 Score=53.73 Aligned_cols=130 Identities=15% Similarity=0.206 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHhHHhCCcceEEEeeecccCC---Ccc-------------eee-------C--------C-----CCCC
Q 021612 2 ILIREFVRFAGHFVRKVYPVMLYGWILTTWMD---FVV-------------SLL-------T--------R-----HRFP 45 (310)
Q Consensus 2 ~~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~---~~~-------------ft~-------d--------~-----~~Fp 45 (310)
+..+.|++-++.+++.|+|...+ |+|++|++ ... .++ . . +.||
T Consensus 209 v~~~~i~~~l~~L~~~gi~~~~v-iIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~kF~~~~~~~~~~~~~ 287 (747)
T PF05691_consen 209 VTEEGILEGLKSLEEGGIPPRFV-IIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSKFRAYKSGKSPEAFP 287 (747)
T ss_pred cCHHHHHHHHHHHHhCCCCceEE-EEecchhcccccCcccccccccccccccccchhhhhhhhhhhhhhccCCCcccCCc
Confidence 35678999999999999999985 57999986 111 111 1 0 2355
Q ss_pred C-hHHHHHHHHhC--CCeEE-EEeC-----CccccCCCccccccccccceeEecCCCCceeEeecCC-------CccCCC
Q 021612 46 D-PKSLAADLHLN--GFKAI-WMLD-----PGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPG-------PCVFPD 109 (310)
Q Consensus 46 d-p~~mi~~L~~~--G~k~~-~~v~-----P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G-------~~~~~D 109 (310)
+ .+.+++.++++ |+|.| +|.. -.|..+.. ..|+.- -.+.+.+.| +....|. ..+ +=
T Consensus 288 ~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~-~~~~~k---~~~~~~spg---~~~~~~d~~~d~~~~~g-~g 359 (747)
T PF05691_consen 288 SGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGM-LAYNYK---LVYPKLSPG---LQGNMPDLAVDSIVKGG-LG 359 (747)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCc-cccccc---eeecccCCc---ccccCccccccccccCc-cc
Confidence 4 68899999998 78854 5521 12222211 001100 000111111 0000110 000 01
Q ss_pred CCCH-HHHHHHHHHHHhHHhCCccEEEecCCC
Q 021612 110 YTQS-KVRSWWGSLVKDFIYNGVDGIWNDMNE 140 (310)
Q Consensus 110 ft~p-~a~~ww~~~~~~~~~~Gvdg~w~D~~e 140 (310)
.-+| ++.+.|.+.+..|.+.||||+|.|..-
T Consensus 360 lv~p~~~~~FYd~~hsyL~s~GVDgVKVD~Q~ 391 (747)
T PF05691_consen 360 LVDPEDAFRFYDDFHSYLASAGVDGVKVDVQA 391 (747)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCEEEEchhh
Confidence 2344 467789999988889999999999764
No 48
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=95.84 E-value=0.052 Score=55.98 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=58.4
Q ss_pred ChHHHHHHHHhCCCeEEEEeCC-ccccCCC---ccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHH
Q 021612 46 DPKSLAADLHLNGFKAIWMLDP-GIKHEDG---YFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 121 (310)
Q Consensus 46 dp~~mi~~L~~~G~k~~~~v~P-~i~~~~~---~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~ 121 (310)
+.++||+.+|++|++|++=+.+ +...... ...|+......||-.+++..... ..|.|-+.-+|+.+|+++++..+
T Consensus 246 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~-~~~~g~gn~ln~~~p~vr~~i~d 324 (688)
T TIGR02100 246 EFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYY-INDTGTGNTLNLSHPRVLQMVMD 324 (688)
T ss_pred HHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCcee-cCCCCccccccCCCHHHHHHHHH
Confidence 4689999999999999887654 2222111 01122111123333333211111 22334445689999999999999
Q ss_pred HHHhHH-hCCccEEEecCCC
Q 021612 122 LVKDFI-YNGVDGIWNDMNE 140 (310)
Q Consensus 122 ~~~~~~-~~Gvdg~w~D~~e 140 (310)
.++.++ ++|||||=+|...
T Consensus 325 ~l~~W~~e~gIDGfR~D~a~ 344 (688)
T TIGR02100 325 SLRYWVTEMHVDGFRFDLAT 344 (688)
T ss_pred HHHHHHHHcCCcEEEEechh
Confidence 998887 5999999999653
No 49
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=95.84 E-value=0.11 Score=52.14 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCC---------CcceeeCCCCCCC---hHHHHHHHHhCCCeEEEEeCC-ccc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMD---------FVVSLLTRHRFPD---PKSLAADLHLNGFKAIWMLDP-GIK 70 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~---------~~~ft~d~~~Fpd---p~~mi~~L~~~G~k~~~~v~P-~i~ 70 (310)
++.|.+-++.+++.||-. +|+-.-+.. ..-+.+|+ +|-. .++||+++|++|+||++=+.| +..
T Consensus 26 ~~gi~~~l~yl~~lG~~~---i~l~Pi~~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~ 101 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDY---IWLNPFYVSPQKDNGYDVSDYYAINP-LFGTMADFEELVSEAKKRNIKIMLDMVFNHTS 101 (543)
T ss_pred HHHHHHhHHHHHHcCCCE---EEECCcccCCCCCCCCCccccCccCc-ccCCHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 455666677778877654 333322221 12245664 3554 578999999999999887655 333
Q ss_pred cCCCcccccc-----ccccceeEe-cCCCCc---e----eEeecCCC--------------ccCCCCCCHHHHHHHHHHH
Q 021612 71 HEDGYFVYDS-----GSKIDVWIQ-KADGTP---F----IGEVWPGP--------------CVFPDYTQSKVRSWWGSLV 123 (310)
Q Consensus 71 ~~~~~~~y~~-----~~~~~~~v~-~~~g~~---~----~~~~w~G~--------------~~~~Dft~p~a~~ww~~~~ 123 (310)
.+..+ +.+ ..-.++|+- +..|.+ + -+..|.+. ..-+|+.||++++...+.+
T Consensus 102 ~~~~~--f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~ 179 (543)
T TIGR02403 102 TEHEW--FKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVV 179 (543)
T ss_pred cchHH--HHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHH
Confidence 32211 111 111234432 111111 0 01123211 2347888999999999988
Q ss_pred HhHHhCCccEEEecCC
Q 021612 124 KDFIYNGVDGIWNDMN 139 (310)
Q Consensus 124 ~~~~~~Gvdg~w~D~~ 139 (310)
+..++.|||||=+|..
T Consensus 180 ~~W~~~giDGfRlDa~ 195 (543)
T TIGR02403 180 NFWRDKGVDGFRLDVI 195 (543)
T ss_pred HHHHHcCCCEEEEeee
Confidence 8888899999999965
No 50
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=95.76 E-value=0.042 Score=60.11 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=59.8
Q ss_pred ChHHHHHHHHhCCCeEEEEeCC-ccccCCCcc---ccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHH
Q 021612 46 DPKSLAADLHLNGFKAIWMLDP-GIKHEDGYF---VYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 121 (310)
Q Consensus 46 dp~~mi~~L~~~G~k~~~~v~P-~i~~~~~~~---~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~ 121 (310)
+.++||+.+|++|++||+=+.+ +...+..+. .++......||..++ +.+..-..|.|.+..+|+.+|.++++..+
T Consensus 248 efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~-~~~~~y~~~~G~gn~~n~~~p~v~~~i~d 326 (1221)
T PRK14510 248 EFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEP-GNPKEYENWWGCGNLPNLERPFILRLPMD 326 (1221)
T ss_pred HHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecC-CCCCcccCCCCCCCccccCCHHHHHHHHH
Confidence 4689999999999999887654 333222110 111111222332221 11111133556666789999999999999
Q ss_pred HHHhHHhCCccEEEecCC
Q 021612 122 LVKDFIYNGVDGIWNDMN 139 (310)
Q Consensus 122 ~~~~~~~~Gvdg~w~D~~ 139 (310)
.++..++.|||||=+|..
T Consensus 327 ~lr~Wv~~gVDGfRfDla 344 (1221)
T PRK14510 327 VLRSWAKRGVDGFRLDLA 344 (1221)
T ss_pred HHHHHHHhCCCEEEEech
Confidence 999888899999999954
No 51
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=95.44 E-value=0.1 Score=53.56 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=60.5
Q ss_pred HHHHHHHHhCCCeEEEEeC-CccccC---CCcccccccccccee-EecCCCCceeEeecCCCccCCCCCCHHHHHHHHHH
Q 021612 48 KSLAADLHLNGFKAIWMLD-PGIKHE---DGYFVYDSGSKIDVW-IQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSL 122 (310)
Q Consensus 48 ~~mi~~L~~~G~k~~~~v~-P~i~~~---~~~~~y~~~~~~~~~-v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~ 122 (310)
+.||++||+.|+.||+=|. .+.... ..-..|+ +...++| -.+++|.. .-+.|.+--++-++|-+++|.-+.
T Consensus 268 K~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~-~id~~~Yyr~~~dg~~---~N~TGcGNtln~~hpmvrk~ivDs 343 (697)
T COG1523 268 KDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFR-GIDPNYYYRLDPDGYY---SNGTGCGNTLNTEHPMVRKLIVDS 343 (697)
T ss_pred HHHHHHHHHcCCEEEEEEeccCcccccCcCcccccc-cCCcCceEEECCCCCe---ecCCccCcccccCChHHHHHHHHH
Confidence 6899999999999987653 232110 0011243 3344444 44555432 234566667888999999999999
Q ss_pred HHhHH-hCCccEEEecCC
Q 021612 123 VKDFI-YNGVDGIWNDMN 139 (310)
Q Consensus 123 ~~~~~-~~Gvdg~w~D~~ 139 (310)
|+.++ .++||||=+|..
T Consensus 344 LrYWv~e~hVDGFRFDLa 361 (697)
T COG1523 344 LRYWVEEYHVDGFRFDLA 361 (697)
T ss_pred HHHHHHHhCCCceeecch
Confidence 99988 599999999986
No 52
>PLN02960 alpha-amylase
Probab=94.93 E-value=0.36 Score=50.66 Aligned_cols=125 Identities=17% Similarity=0.165 Sum_probs=74.4
Q ss_pred HHHHHhHHhCCcceEEEeee-----ccc--CCCcceeeCCCCCCCh---HHHHHHHHhCCCeEEEEeCC-ccccCCC--c
Q 021612 9 RFAGHFVRKVYPVMLYGWIL-----TTW--MDFVVSLLTRHRFPDP---KSLAADLHLNGFKAIWMLDP-GIKHEDG--Y 75 (310)
Q Consensus 9 ~~~~~~~~~~iP~d~~~~~d-----~~w--~~~~~ft~d~~~Fpdp---~~mi~~L~~~G~k~~~~v~P-~i~~~~~--~ 75 (310)
++++.+++.||-.=.+.=+. ..| ..-.-|..+ .+|-.| +.||+.+|++|++|++=+.| +...+.. .
T Consensus 421 ~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~-~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L 499 (897)
T PLN02960 421 KVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVS-SRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGL 499 (897)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcc-cccCCHHHHHHHHHHHHHCCCEEEEEecccccCCccccch
Confidence 45677788887642211000 001 111234444 355554 68999999999999987655 4444421 1
Q ss_pred cccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHH-hCCccEEEecCCC
Q 021612 76 FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 140 (310)
Q Consensus 76 ~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~e 140 (310)
..|+ +....||-....|. ...| |. ..+||.+|+++++..+.++..+ +.+||||=+|.-.
T Consensus 500 ~~FD-G~~~~Yf~~~~~g~---~~~W-G~-~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~ 559 (897)
T PLN02960 500 SLFD-GSNDCYFHSGKRGH---HKRW-GT-RMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLG 559 (897)
T ss_pred hhcC-CCccceeecCCCCc---cCCC-CC-cccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccc
Confidence 1233 22222333222221 1235 33 4579999999999999998887 6899999999664
No 53
>PRK05402 glycogen branching enzyme; Provisional
Probab=94.90 E-value=0.44 Score=49.65 Aligned_cols=95 Identities=19% Similarity=0.262 Sum_probs=58.2
Q ss_pred eeeCCCCCCCh---HHHHHHHHhCCCeEEEEeCC-ccccCCC-ccccccccccceeEecCC-CCceeEeecCCCccCCCC
Q 021612 37 SLLTRHRFPDP---KSLAADLHLNGFKAIWMLDP-GIKHEDG-YFVYDSGSKIDVWIQKAD-GTPFIGEVWPGPCVFPDY 110 (310)
Q Consensus 37 ft~d~~~Fpdp---~~mi~~L~~~G~k~~~~v~P-~i~~~~~-~~~y~~~~~~~~~v~~~~-g~~~~~~~w~G~~~~~Df 110 (310)
|..+ .+|-.+ +.||+++|++|++|++=+.| +...+.. ...|+ +. .-|..+++. |. ...|. +..+|+
T Consensus 305 ~ai~-~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~-~~-~~y~~~~~~~~~---~~~w~--~~~~n~ 376 (726)
T PRK05402 305 YAPT-SRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGLARFD-GT-ALYEHADPREGE---HPDWG--TLIFNY 376 (726)
T ss_pred CCcC-cccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccchhccC-CC-cceeccCCcCCc---cCCCC--CccccC
Confidence 5555 356654 68999999999999987655 3333221 11111 10 011111110 10 01232 235799
Q ss_pred CCHHHHHHHHHHHHhHHh-CCccEEEecCC
Q 021612 111 TQSKVRSWWGSLVKDFIY-NGVDGIWNDMN 139 (310)
Q Consensus 111 t~p~a~~ww~~~~~~~~~-~Gvdg~w~D~~ 139 (310)
.+|++++...+.++..++ .|||||=+|..
T Consensus 377 ~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v 406 (726)
T PRK05402 377 GRNEVRNFLVANALYWLEEFHIDGLRVDAV 406 (726)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEECCH
Confidence 999999999998888874 89999999964
No 54
>PLN03244 alpha-amylase; Provisional
Probab=94.88 E-value=0.093 Score=54.17 Aligned_cols=96 Identities=19% Similarity=0.226 Sum_probs=63.2
Q ss_pred eeeCCCCCCCh---HHHHHHHHhCCCeEEEEeCC-ccccCC--CccccccccccceeEecCCCCceeEeecCCCccCCCC
Q 021612 37 SLLTRHRFPDP---KSLAADLHLNGFKAIWMLDP-GIKHED--GYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDY 110 (310)
Q Consensus 37 ft~d~~~Fpdp---~~mi~~L~~~G~k~~~~v~P-~i~~~~--~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Df 110 (310)
|..+ .+|-.| +.||+++|++|++|++=+.+ +...+. +...| ++....||-..+.|. -..| |. ...|+
T Consensus 431 FAps-sRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~f-DGt~~~Yf~~~~~g~---~~~W-Gs-~~fny 503 (872)
T PLN03244 431 FAAS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLF-DGSNDCYFHTGKRGH---HKHW-GT-RMFKY 503 (872)
T ss_pred cccC-cccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhc-CCCccceeccCCCCc---cCCC-CC-ceecC
Confidence 4443 466655 68999999999999987665 444432 11122 232223443322221 1245 44 46799
Q ss_pred CCHHHHHHHHHHHHhHH-hCCccEEEecCC
Q 021612 111 TQSKVRSWWGSLVKDFI-YNGVDGIWNDMN 139 (310)
Q Consensus 111 t~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~ 139 (310)
.+++++++..+.++..+ ..+||||-+|.-
T Consensus 504 g~~EVr~FLLsna~yWleEyhIDGFRfDaV 533 (872)
T PLN03244 504 GDLDVLHFLISNLNWWITEYQIDGFQFHSL 533 (872)
T ss_pred CCHHHHHHHHHHHHHHHHHhCcCcceeecc
Confidence 99999999999998887 699999999965
No 55
>PRK12313 glycogen branching enzyme; Provisional
Probab=94.81 E-value=0.38 Score=49.32 Aligned_cols=120 Identities=20% Similarity=0.194 Sum_probs=69.8
Q ss_pred HHHHhHHhCCcceEEEeeec----------ccCCCcceeeCCCCCCCh---HHHHHHHHhCCCeEEEEeCC-ccccCCCc
Q 021612 10 FAGHFVRKVYPVMLYGWILT----------TWMDFVVSLLTRHRFPDP---KSLAADLHLNGFKAIWMLDP-GIKHEDGY 75 (310)
Q Consensus 10 ~~~~~~~~~iP~d~~~~~d~----------~w~~~~~ft~d~~~Fpdp---~~mi~~L~~~G~k~~~~v~P-~i~~~~~~ 75 (310)
+++.+++.||-. +|+-. +|....-|..+ .+|-.+ ++||+++|++|++|++=+.| +...+...
T Consensus 176 ll~yl~~LGv~~---i~L~Pi~~~~~~~~~GY~~~~y~~i~-~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~ 251 (633)
T PRK12313 176 LIPYVKEMGYTH---VEFMPLMEHPLDGSWGYQLTGYFAPT-SRYGTPEDFMYLVDALHQNGIGVILDWVPGHFPKDDDG 251 (633)
T ss_pred HHHHHHHcCCCE---EEeCchhcCCCCCCCCCCCcCcCcCC-CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc
Confidence 456777888654 22211 11111235554 356554 78999999999999987665 33333211
Q ss_pred -ccccccccccee-EecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh-CCccEEEecCCC
Q 021612 76 -FVYDSGSKIDVW-IQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 140 (310)
Q Consensus 76 -~~y~~~~~~~~~-v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~-~Gvdg~w~D~~e 140 (310)
..|+ + ..++ ..++. ..+ ...|. +.-+|+.||++++...+.++..++ .|||||=+|...
T Consensus 252 ~~~~~-~--~~~~~~~~~~-~~~-~~~w~--~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~ 312 (633)
T PRK12313 252 LAYFD-G--TPLYEYQDPR-RAE-NPDWG--ALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVS 312 (633)
T ss_pred ccccC-C--CcceeecCCC-CCc-CCCCC--CcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChh
Confidence 1121 1 0111 11111 011 11243 235799999999999998888875 799999999754
No 56
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=94.76 E-value=0.09 Score=54.45 Aligned_cols=125 Identities=14% Similarity=0.108 Sum_probs=76.4
Q ss_pred HHHHHhHHhCCcceEEE-eeec------ccCCCcceeeCCCCCCCh---HHHHHHHHhCCCeEEEEeCC-ccccCC--Cc
Q 021612 9 RFAGHFVRKVYPVMLYG-WILT------TWMDFVVSLLTRHRFPDP---KSLAADLHLNGFKAIWMLDP-GIKHED--GY 75 (310)
Q Consensus 9 ~~~~~~~~~~iP~d~~~-~~d~------~w~~~~~ft~d~~~Fpdp---~~mi~~L~~~G~k~~~~v~P-~i~~~~--~~ 75 (310)
+.++.+++.||-.=.+. +.+. +|....-|..+ .+|-.| +.||+.+|++|++|++=+.+ ++..+. +.
T Consensus 255 ~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~-~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl 333 (758)
T PLN02447 255 DVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS-SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGL 333 (758)
T ss_pred HHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccc
Confidence 45667788887642211 0011 11112335554 577665 78999999999999887655 343321 22
Q ss_pred cccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh-CCccEEEecCCC
Q 021612 76 FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 140 (310)
Q Consensus 76 ~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~-~Gvdg~w~D~~e 140 (310)
..|+ +....||..+..|. ...| | +..+|+.+++++++..+.++..++ .+||||-+|.-.
T Consensus 334 ~~fD-g~~~~Yf~~~~~g~---~~~w-~-~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~ 393 (758)
T PLN02447 334 NGFD-GTDGSYFHSGPRGY---HWLW-D-SRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVT 393 (758)
T ss_pred cccC-CCCccccccCCCCC---cCcC-C-CceecCCCHHHHHHHHHHHHHHHHHhCcccccccchh
Confidence 2232 33334554332221 1224 3 335899999999999999988884 899999999765
No 57
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=94.73 E-value=0.28 Score=49.26 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=71.4
Q ss_pred HHHHHHHHHhHHhCCcceEEEe-ee----ccc--CCCcceeeCCCCCCC---hHHHHHHHHhCCCeEEEEeCC-ccccCC
Q 021612 5 REFVRFAGHFVRKVYPVMLYGW-IL----TTW--MDFVVSLLTRHRFPD---PKSLAADLHLNGFKAIWMLDP-GIKHED 73 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~-~d----~~w--~~~~~ft~d~~~Fpd---p~~mi~~L~~~G~k~~~~v~P-~i~~~~ 73 (310)
+.|.+-++.+.+.||-.=.+.= .+ ..| .....|..+ .+|-. .++||+.+|++|++|++=+.+ +...+.
T Consensus 111 ~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~-~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~ 189 (542)
T TIGR02402 111 DAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPH-NAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEG 189 (542)
T ss_pred HHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccc-cccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcc
Confidence 3455556777888865422110 00 111 112234554 35655 478999999999999887654 343333
Q ss_pred CccccccccccceeEecCCCCceeEeecCCCccCCCCCCH---HHHHHHHHHHHhHH-hCCccEEEecCC
Q 021612 74 GYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQS---KVRSWWGSLVKDFI-YNGVDGIWNDMN 139 (310)
Q Consensus 74 ~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p---~a~~ww~~~~~~~~-~~Gvdg~w~D~~ 139 (310)
.|.. -.. .||-.. . ...| |. -+|+.+| +++++..+.++..+ +.|||||=+|..
T Consensus 190 ~~~~---~~~-~y~~~~-~-----~~~w-g~--~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~ 246 (542)
T TIGR02402 190 NYLP---RYA-PYFTDR-Y-----STPW-GA--AINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAV 246 (542)
T ss_pred cccc---ccC-ccccCC-C-----CCCC-CC--ccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCH
Confidence 2211 001 133211 1 1223 22 4799999 99999999888887 589999999965
No 58
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=94.72 E-value=0.14 Score=55.34 Aligned_cols=85 Identities=21% Similarity=0.170 Sum_probs=57.8
Q ss_pred hHHHHHHHHhCCCeEEEEeCC-ccccCCCccccccccccceeEe-cCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHH
Q 021612 47 PKSLAADLHLNGFKAIWMLDP-GIKHEDGYFVYDSGSKIDVWIQ-KADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVK 124 (310)
Q Consensus 47 p~~mi~~L~~~G~k~~~~v~P-~i~~~~~~~~y~~~~~~~~~v~-~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~ 124 (310)
.++||+.||++|++||+=+.+ +....+ .|+.. ..+||.+ +.+|.+.. .|. +.-++..+|.++++..+.++
T Consensus 557 fK~LV~alH~~GI~VILDVVyNHt~~~~---~f~~~-~p~Yy~~~~~~G~~~~--~~~--g~~l~~e~~~vrk~iiDsl~ 628 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDVVYNHTAKVY---IFEDL-EPNYYHFMDADGTPRT--SFG--GGRLGTTHEMSRRILVDSIK 628 (1111)
T ss_pred HHHHHHHHHHCCCEEEEecccccccccc---ccccc-CCCceEeeCCCCCccc--ccC--CCCCCcCCHHHHHHHHHHHH
Confidence 679999999999999887554 332222 24332 2345543 34554432 222 23467889999999999998
Q ss_pred hHH-hCCccEEEecCC
Q 021612 125 DFI-YNGVDGIWNDMN 139 (310)
Q Consensus 125 ~~~-~~Gvdg~w~D~~ 139 (310)
.+. ++|||||=+|..
T Consensus 629 yWv~ey~VDGFRfDl~ 644 (1111)
T TIGR02102 629 YLVDEFKVDGFRFDMM 644 (1111)
T ss_pred HHHHhcCCcEEEEecc
Confidence 887 589999999954
No 59
>PLN02784 alpha-amylase
Probab=94.66 E-value=0.6 Score=48.90 Aligned_cols=132 Identities=20% Similarity=0.131 Sum_probs=73.0
Q ss_pred HHHHHHHHHhHHhCCcceEEEeeecc--------cCCCcceeeCCCCCCC---hHHHHHHHHhCCCeEEEEeCCc-ccc-
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWILTT--------WMDFVVSLLTRHRFPD---PKSLAADLHLNGFKAIWMLDPG-IKH- 71 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d~~--------w~~~~~ft~d~~~Fpd---p~~mi~~L~~~G~k~~~~v~P~-i~~- 71 (310)
+.|.+-++.+++.||-. +|+-.. |..+.-|..| .+|-. .+.||+.+|++|+++++=+.+. ...
T Consensus 521 ~~I~ekldyL~~LG~ta---IWLpP~~~s~s~~GY~p~D~y~ld-s~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~ 596 (894)
T PLN02784 521 MELGEKAAELSSLGFTV---VWLPPPTESVSPEGYMPKDLYNLN-SRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAH 596 (894)
T ss_pred HHHHHHHHHHHHhCCCE---EEeCCCCCCCCCCCcCcccccccC-cCcCCHHHHHHHHHHHHHCCCEEEEEECccccccc
Confidence 56677788888888754 344332 2223346666 57765 5789999999999998765432 111
Q ss_pred ----CCCccccccccccceeEecCCCCceeE--eecCCC----ccCCCCCCHHHHHHHHHHHHhHH-hCCccEEEecCCC
Q 021612 72 ----EDGYFVYDSGSKIDVWIQKADGTPFIG--EVWPGP----CVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 140 (310)
Q Consensus 72 ----~~~~~~y~~~~~~~~~v~~~~g~~~~~--~~w~G~----~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~e 140 (310)
+..+..|.....-+-.-...+...|.+ ..+.|. ..-+|.+||++++-..+.++-+. ++|||||=+|+.-
T Consensus 597 f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVK 676 (894)
T PLN02784 597 FQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVR 676 (894)
T ss_pred ccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccC
Confidence 111111111000000000000001111 112221 23467789999988777777666 6899999999874
No 60
>PLN02361 alpha-amylase
Probab=94.62 E-value=0.52 Score=45.49 Aligned_cols=129 Identities=16% Similarity=0.092 Sum_probs=71.2
Q ss_pred HHHHHHHHHhHHhCCcceEEEeeecccCC--------CcceeeCCCCCCC---hHHHHHHHHhCCCeEEEEeCCc-c-cc
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWILTTWMD--------FVVSLLTRHRFPD---PKSLAADLHLNGFKAIWMLDPG-I-KH 71 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d~~w~~--------~~~ft~d~~~Fpd---p~~mi~~L~~~G~k~~~~v~P~-i-~~ 71 (310)
+.|.+-++.+++.||-. +|+-..... ..-+..| ++|-. .+.||+.+|++|+|+++=+.+. . ..
T Consensus 29 ~~i~~kl~~l~~lG~t~---iwl~P~~~~~~~~GY~~~d~y~~~-~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g~ 104 (401)
T PLN02361 29 RNLEGKVPDLAKSGFTS---AWLPPPSQSLAPEGYLPQNLYSLN-SAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVGT 104 (401)
T ss_pred HHHHHHHHHHHHcCCCE---EEeCCCCcCCCCCCCCcccccccC-cccCCHHHHHHHHHHHHHcCCEEEEEEccccccCC
Confidence 45666777888888754 344433221 2235666 57775 5789999999999998754432 1 11
Q ss_pred C----CCcccccccccccee---E-ecCCCC--ceeEeecCCCccCCCCCCHHHHHHHHHHHHhHH-hCCccEEEecCC
Q 021612 72 E----DGYFVYDSGSKIDVW---I-QKADGT--PFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMN 139 (310)
Q Consensus 72 ~----~~~~~y~~~~~~~~~---v-~~~~g~--~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~ 139 (310)
. ..|..|+. ...++- + ....|. .-.+..+++ ..=+|.+||++++...+.++-+. +.|||||=+|..
T Consensus 105 ~~~~~~~y~~~~g-~~~~wd~~~~~~~~~g~~~~~~~~~~~~-lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDav 181 (401)
T PLN02361 105 TQGHGGMYNRYDG-IPLPWDEHAVTSCTGGLGNRSTGDNFNG-VPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFA 181 (401)
T ss_pred CCCCCCCcccCCC-CcCCCCccccccccCCCCCccCCCCCcc-CCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 1 11222221 000000 0 000010 000111111 23456778999998888887666 489999999965
No 61
>PRK14706 glycogen branching enzyme; Provisional
Probab=94.38 E-value=0.54 Score=48.17 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=70.2
Q ss_pred HHHHHhHHhCCcceEEEee-e----ccc--CCCcceeeCCCCCCCh---HHHHHHHHhCCCeEEEEeCC-ccccCCCccc
Q 021612 9 RFAGHFVRKVYPVMLYGWI-L----TTW--MDFVVSLLTRHRFPDP---KSLAADLHLNGFKAIWMLDP-GIKHEDGYFV 77 (310)
Q Consensus 9 ~~~~~~~~~~iP~d~~~~~-d----~~w--~~~~~ft~d~~~Fpdp---~~mi~~L~~~G~k~~~~v~P-~i~~~~~~~~ 77 (310)
++++-+++.||-.=.+.-+ . ..| ....-|..+ .+|-.+ +.||+++|++|++|++=+.| +...+.....
T Consensus 172 ~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~-~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~ 250 (639)
T PRK14706 172 RLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPT-SRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLA 250 (639)
T ss_pred HHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccc-cccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhh
Confidence 3445677888664222110 1 112 111335554 467554 78999999999999987655 3333221110
Q ss_pred cccccccceeEecCC-CCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHH-hCCccEEEecCCC
Q 021612 78 YDSGSKIDVWIQKAD-GTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 140 (310)
Q Consensus 78 y~~~~~~~~~v~~~~-g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~e 140 (310)
+-++.. -|...++. |. -..| | +..+|+.+|+++++..+.++..+ +.+||||=+|...
T Consensus 251 ~~dg~~-~y~~~~~~~g~---~~~w-~-~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~ 309 (639)
T PRK14706 251 HFDGGP-LYEYADPRKGY---HYDW-N-TYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVA 309 (639)
T ss_pred ccCCCc-ceeccCCcCCc---CCCC-C-CcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeeh
Confidence 001100 01111111 10 1123 2 23479999999999999988887 6999999999743
No 62
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=93.83 E-value=0.25 Score=52.24 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=55.3
Q ss_pred hHHHHHHHHhCCCeEEEEeCC-ccccCCC--ccccccccccceeEecC-CCCceeEeecCCCccCCCCCCHHHHHHHHHH
Q 021612 47 PKSLAADLHLNGFKAIWMLDP-GIKHEDG--YFVYDSGSKIDVWIQKA-DGTPFIGEVWPGPCVFPDYTQSKVRSWWGSL 122 (310)
Q Consensus 47 p~~mi~~L~~~G~k~~~~v~P-~i~~~~~--~~~y~~~~~~~~~v~~~-~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~ 122 (310)
.++||+.||++|++||+=+.. +...+.. ...++. ...+||.+.. +|......+ +.-.+..||.++++..+.
T Consensus 406 fk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~-~~P~YY~r~~~~G~~~n~~~----~~d~a~e~~~Vrk~iiDs 480 (898)
T TIGR02103 406 FREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDK-IVPGYYHRLNEDGGVENSTC----CSNTATEHRMMAKLIVDS 480 (898)
T ss_pred HHHHHHHHHHCCCEEEEEeecccccccCccCcccccc-cCcHhhEeeCCCCCeecCCC----CcCCCCCCHHHHHHHHHH
Confidence 578999999999999876543 2222110 012222 1235666542 332211111 122467789999999999
Q ss_pred HHhHH-hCCccEEEecCC
Q 021612 123 VKDFI-YNGVDGIWNDMN 139 (310)
Q Consensus 123 ~~~~~-~~Gvdg~w~D~~ 139 (310)
++... ++|||||=+|.-
T Consensus 481 l~~W~~ey~VDGFRfDlm 498 (898)
T TIGR02103 481 LVVWAKDYKVDGFRFDLM 498 (898)
T ss_pred HHHHHHHcCCCEEEEech
Confidence 98877 699999999954
No 63
>PRK12568 glycogen branching enzyme; Provisional
Probab=93.64 E-value=0.46 Score=49.21 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=60.6
Q ss_pred cceeeCCCCCCCh---HHHHHHHHhCCCeEEEEeCC-ccccCC-CccccccccccceeEecCCCCceeEeecCCCccCCC
Q 021612 35 VVSLLTRHRFPDP---KSLAADLHLNGFKAIWMLDP-GIKHED-GYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPD 109 (310)
Q Consensus 35 ~~ft~d~~~Fpdp---~~mi~~L~~~G~k~~~~v~P-~i~~~~-~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~D 109 (310)
..|..+ .+|..+ +.||+.+|++|++|++=+.| +...+. +...|+. ..+|- ..+...-....|. ...+|
T Consensus 307 ~~~a~~-~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l~~fdg---~~~Ye-~~d~~~g~~~~W~--~~~~N 379 (730)
T PRK12568 307 GLYAPT-ARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAHGLAQFDG---AALYE-HADPREGMHRDWN--TLIYN 379 (730)
T ss_pred cCCccC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCccccccccCCC---ccccc-cCCCcCCccCCCC--Ceecc
Confidence 345665 477765 68999999999999987665 333321 1111221 01111 1111000112342 22479
Q ss_pred CCCHHHHHHHHHHHHhHH-hCCccEEEecCC
Q 021612 110 YTQSKVRSWWGSLVKDFI-YNGVDGIWNDMN 139 (310)
Q Consensus 110 ft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~ 139 (310)
+.+|+++++..+.++..+ ..|||||=+|.-
T Consensus 380 ~~~peVr~~li~~a~~Wl~eyhIDG~R~DAv 410 (730)
T PRK12568 380 YGRPEVTAYLLGSALEWIEHYHLDGLRVDAV 410 (730)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCceEEEEcCH
Confidence 999999999999888877 589999999964
No 64
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=93.18 E-value=0.18 Score=47.00 Aligned_cols=84 Identities=20% Similarity=0.270 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCccccCCCccc-ccccc---ccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHH
Q 021612 48 KSLAADLHLNGFKAIWMLDPGIKHEDGYFV-YDSGS---KIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLV 123 (310)
Q Consensus 48 ~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~-y~~~~---~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~ 123 (310)
++-|+.||+.|.+++..+.-+ .-+.|.. |++.. ...++ |.. -..|||. .++|+.+|+-++...+++
T Consensus 84 ~~~i~~Lk~~g~~viaYlSvG--e~E~~R~y~~~~~~~~~~~~l-----~~~--n~~W~g~-~~vd~~~~~W~~il~~rl 153 (315)
T TIGR01370 84 PEEIVRAAAAGRWPIAYLSIG--AAEDYRFYWQKGWKVNAPAWL-----GNE--DPDWPGN-YDVKYWDPEWKAIAFSYL 153 (315)
T ss_pred HHHHHHHHhCCcEEEEEEEch--hccccchhhhhhhhcCCHHHh-----CCC--CCCCCCc-eeEecccHHHHHHHHHHH
Confidence 466788999999987665522 1112211 11100 01111 111 1358885 678999999888888888
Q ss_pred HhHHhCCccEEEecCCCC
Q 021612 124 KDFIYNGVDGIWNDMNEP 141 (310)
Q Consensus 124 ~~~~~~Gvdg~w~D~~e~ 141 (310)
+.+.+.|+||+-+|.-+.
T Consensus 154 ~~l~~kGfDGvfLD~lDs 171 (315)
T TIGR01370 154 DRVIAQGFDGVYLDLIDA 171 (315)
T ss_pred HHHHHcCCCeEeeccchh
Confidence 888899999999997664
No 65
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=92.79 E-value=0.56 Score=46.36 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHHHHHhHHh-CCccEEEecCCC
Q 021612 108 PDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 140 (310)
Q Consensus 108 ~Dft~p~a~~ww~~~~~~~~~-~Gvdg~w~D~~e 140 (310)
+|..||++++...+.++.+++ .|||||=+|...
T Consensus 203 Ln~~np~V~~~l~~~~~~w~~~~giDGfRlDavk 236 (479)
T PRK09441 203 IDFRHPEVREELKYWAKWYMETTGFDGFRLDAVK 236 (479)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhc
Confidence 455689999999988888886 999999999653
No 66
>PRK14705 glycogen branching enzyme; Provisional
Probab=92.70 E-value=0.32 Score=53.09 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=60.7
Q ss_pred cceeeCCCCCCCh---HHHHHHHHhCCCeEEEEeCC-ccccCCC-ccccccccccceeEecCCCCceeEeecCCCccCCC
Q 021612 35 VVSLLTRHRFPDP---KSLAADLHLNGFKAIWMLDP-GIKHEDG-YFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPD 109 (310)
Q Consensus 35 ~~ft~d~~~Fpdp---~~mi~~L~~~G~k~~~~v~P-~i~~~~~-~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~D 109 (310)
.-|..+ .+|-.| +.||+.+|++|++||+=+.| +...+.- ...|+. . .+| ...+...-....|.. ..+|
T Consensus 803 ~y~ap~-~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~fdg-~--~~y-~~~d~~~g~~~~Wg~--~~fn 875 (1224)
T PRK14705 803 SYFAPT-SRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQFDG-Q--PLY-EHADPALGEHPDWGT--LIFD 875 (1224)
T ss_pred ccCCcC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhcCC-C--ccc-ccCCcccCCCCCCCC--ceec
Confidence 345554 577665 68999999999999987666 3333211 011111 0 011 111111001123432 3479
Q ss_pred CCCHHHHHHHHHHHHhHH-hCCccEEEecCCC
Q 021612 110 YTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 140 (310)
Q Consensus 110 ft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~e 140 (310)
|.+++++++..+.+...+ .++||||=+|.-.
T Consensus 876 ~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~ 907 (1224)
T PRK14705 876 FGRTEVRNFLVANALYWLDEFHIDGLRVDAVA 907 (1224)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCcEEEeehh
Confidence 999999999999988887 4799999999853
No 67
>PLN02877 alpha-amylase/limit dextrinase
Probab=92.54 E-value=0.51 Score=50.22 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=54.9
Q ss_pred hHHHHHHHHhCCCeEEEEeCC-ccccCCC---ccccccccccceeEec-CCCCceeEeecCCCccCCCCCCHHHHHHHHH
Q 021612 47 PKSLAADLHLNGFKAIWMLDP-GIKHEDG---YFVYDSGSKIDVWIQK-ADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 121 (310)
Q Consensus 47 p~~mi~~L~~~G~k~~~~v~P-~i~~~~~---~~~y~~~~~~~~~v~~-~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~ 121 (310)
.++||+.||++|++|++-+.. +...... ...++ ....+||.+. ++|......+ +.-..-.++.++++..+
T Consensus 468 fk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld-~~vP~YY~r~~~~G~~~ns~c----~n~~Ase~~mvrklIlD 542 (970)
T PLN02877 468 FRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLD-KIVPGYYLRRNSDGFIENSTC----VNNTASEHYMVDRLIVD 542 (970)
T ss_pred HHHHHHHHHHCCCEEEEEECCccccCCCCcchhhccc-CCCCCceEEECCCCCcccCCc----cCCCccCCHHHHHHHHH
Confidence 689999999999999887543 2221100 01222 2234677653 3443211111 11123456888899988
Q ss_pred HHHhHH-hCCccEEEecCCC
Q 021612 122 LVKDFI-YNGVDGIWNDMNE 140 (310)
Q Consensus 122 ~~~~~~-~~Gvdg~w~D~~e 140 (310)
.++... ++|||||=+|...
T Consensus 543 sl~yW~~ey~VDGFRFDlmg 562 (970)
T PLN02877 543 DLLNWAVNYKVDGFRFDLMG 562 (970)
T ss_pred HHHHHHHHhCCCEEEEEccc
Confidence 888877 6999999999763
No 68
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=92.54 E-value=0.33 Score=49.43 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=62.1
Q ss_pred ChHHHHHHHHhCCCeEEEEe-CCccccC--CCccccccccc-cceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHH
Q 021612 46 DPKSLAADLHLNGFKAIWML-DPGIKHE--DGYFVYDSGSK-IDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGS 121 (310)
Q Consensus 46 dp~~mi~~L~~~G~k~~~~v-~P~i~~~--~~~~~y~~~~~-~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~ 121 (310)
+.++||+++|..|+-|++=| +-+...+ .++..|+ |.. ..||-+.+. +.-+-+.+...+..+|++....-+
T Consensus 312 efK~lVd~aHs~GI~VlLDVV~sHaa~n~~d~l~~fd-Gid~~~Yf~~~~r-----~~h~~~~~r~fn~~~~~V~rflL~ 385 (757)
T KOG0470|consen 312 EFKELVDKAHSLGIEVLLDVVHSHAAKNSKDGLNMFD-GIDNSVYFHSGPR-----GYHNSWCSRLFNYNHPVVLRFLLS 385 (757)
T ss_pred HHHHHHHHHhhCCcEEehhhhhhhcccCcCCcchhcc-CcCCceEEEeCCc-----ccccccccccccCCCHHHHHHHHH
Confidence 46799999999999887653 3343332 2344454 444 555555542 333445566789999999998888
Q ss_pred HHHhHH-hCCccEEEecCCC
Q 021612 122 LVKDFI-YNGVDGIWNDMNE 140 (310)
Q Consensus 122 ~~~~~~-~~Gvdg~w~D~~e 140 (310)
.+...+ .+.||||-+|...
T Consensus 386 nLr~WVtEY~vDGFRFD~~s 405 (757)
T KOG0470|consen 386 NLRWWVTEYHVDGFRFDLVS 405 (757)
T ss_pred HHHHHHHheeccceEEcchh
Confidence 887766 6999999999753
No 69
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=92.29 E-value=0.68 Score=45.37 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHhHHhCCccEEEecCC
Q 021612 108 PDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 139 (310)
Q Consensus 108 ~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~ 139 (310)
+++.||+++++..+.++...+.|||||=+|.-
T Consensus 169 ln~~n~~v~~~~~~~~~~W~~~gvDGfRlDa~ 200 (505)
T COG0366 169 LNWENPEVREELLDVVKFWLDKGVDGFRLDAA 200 (505)
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCCeEEeccH
Confidence 78999999999888888888999999999965
No 70
>PRK09505 malS alpha-amylase; Reviewed
Probab=89.99 E-value=2.8 Score=43.38 Aligned_cols=29 Identities=17% Similarity=0.364 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhHHh-CCccEEEecCCC
Q 021612 112 QSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 140 (310)
Q Consensus 112 ~p~a~~ww~~~~~~~~~-~Gvdg~w~D~~e 140 (310)
||++++...+.++..++ .|||||=+|...
T Consensus 435 n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaak 464 (683)
T PRK09505 435 GYTPRDYLTHWLSQWVRDYGIDGFRVDTAK 464 (683)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEechH
Confidence 45788888888888774 899999999653
No 71
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=89.90 E-value=1.4 Score=44.40 Aligned_cols=106 Identities=24% Similarity=0.268 Sum_probs=61.8
Q ss_pred cceeeCCCCCCC---hHHHHHHHHhCCCeEEEEeCCccccCC-Ccc---ccccccccceeEecCCC--------------
Q 021612 35 VVSLLTRHRFPD---PKSLAADLHLNGFKAIWMLDPGIKHED-GYF---VYDSGSKIDVWIQKADG-------------- 93 (310)
Q Consensus 35 ~~ft~d~~~Fpd---p~~mi~~L~~~G~k~~~~v~P~i~~~~-~~~---~y~~~~~~~~~v~~~~g-------------- 93 (310)
++++.=..+|.. .+++++++|..|+++++-+-|.-..++ .++ ...+..-.+++.....+
T Consensus 75 ~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~ 154 (545)
T KOG0471|consen 75 SDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWL 154 (545)
T ss_pred cchhhhcccccHHHHHHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchH
Confidence 444444468875 578999999999998876554333210 000 00011111122222111
Q ss_pred CceeEeecC----------C----CccCCCCCCHHHHHHHHHHHH-hHHhCCccEEEecCCC
Q 021612 94 TPFIGEVWP----------G----PCVFPDYTQSKVRSWWGSLVK-DFIYNGVDGIWNDMNE 140 (310)
Q Consensus 94 ~~~~~~~w~----------G----~~~~~Dft~p~a~~ww~~~~~-~~~~~Gvdg~w~D~~e 140 (310)
+...+..|+ | ...-+|+.||+.++-+.+.++ ...++|||||-+|...
T Consensus 155 ~~~~~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~~gvdGfRiD~v~ 216 (545)
T KOG0471|consen 155 SVFGGSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWLEKGVDGFRIDAVK 216 (545)
T ss_pred hhhccccCcccccccceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEccc
Confidence 011222333 1 234478889999999999998 5558999999999875
No 72
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=89.81 E-value=3.1 Score=41.89 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC--CcceeeCC----CCCCC----------hHHHHHHHHhCCCeEEEEeC
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD--FVVSLLTR----HRFPD----------PKSLAADLHLNGFKAIWMLD 66 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~--~~~ft~d~----~~Fpd----------p~~mi~~L~~~G~k~~~~v~ 66 (310)
+.++..+.++++.+..|-.=. --||+- ...+.=+. ..|+| .++.|+.+|+.|++.+...-
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~Q----FYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynm 191 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQ----FYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNM 191 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEE----ETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CchhHHHHHHHHHhhCcCeEE----EEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHh
Confidence 457788888888886665433 234543 11111111 34444 36899999999999887633
Q ss_pred CccccCCCcccccccccccee-EecCCCCc---e-eEeecCCCccCCCCCCHHHHHHHHHHHHhHH-hCCccEEEecC
Q 021612 67 PGIKHEDGYFVYDSGSKIDVW-IQKADGTP---F-IGEVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDM 138 (310)
Q Consensus 67 P~i~~~~~~~~y~~~~~~~~~-v~~~~g~~---~-~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~ 138 (310)
-+-. .+.|. ..++....+ .++..+.. + ++..|+-.-.+.|-.||+=++++.+++++.+ ..|+|||=+|.
T Consensus 192 iyaa-~~~~~--~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq 266 (559)
T PF13199_consen 192 IYAA-NNNYE--EDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQ 266 (559)
T ss_dssp SSEE-ETT----S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-
T ss_pred hhcc-ccCcc--cccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeec
Confidence 2211 12221 223333232 33333321 1 2234555567889999998888888888777 49999999996
No 73
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=85.78 E-value=6.4 Score=37.19 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=59.5
Q ss_pred HHHHHHHHhHHhCCcceEEEeeecccCC--------CcceeeCCCCCC-C-hHHHHHHHHhCCCeEEEEeCCccccCCCc
Q 021612 6 EFVRFAGHFVRKVYPVMLYGWILTTWMD--------FVVSLLTRHRFP-D-PKSLAADLHLNGFKAIWMLDPGIKHEDGY 75 (310)
Q Consensus 6 ~v~~~~~~~~~~~iP~d~~~~~d~~w~~--------~~~ft~d~~~Fp-d-p~~mi~~L~~~G~k~~~~v~P~i~~~~~~ 75 (310)
+..++|+.+++.|.-.-+++ ...++ +.+++.-...+. | .+++++.+++.|+|+.+..+|. .-...
T Consensus 92 D~dqW~~~ak~aGakY~VlT---akHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~-dw~~~- 166 (346)
T PF01120_consen 92 DADQWAKLAKDAGAKYVVLT---AKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPW-DWHHP- 166 (346)
T ss_dssp -HHHHHHHHHHTT-SEEEEE---EE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESS-SCCCT-
T ss_pred CHHHHHHHHHHcCCCEEEee---hhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecch-HhcCc-
Confidence 34578899999999876643 22222 222222111111 3 3799999999999999988776 21111
Q ss_pred cccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHH-HHHHHHHHhHH-hCCccEEEecCCCC
Q 021612 76 FVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVR-SWWGSLVKDFI-YNGVDGIWNDMNEP 141 (310)
Q Consensus 76 ~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~-~ww~~~~~~~~-~~Gvdg~w~D~~e~ 141 (310)
.|........ .+ + -+... ..++-. ++|..+++.|. ++.+|.+|+|++-+
T Consensus 167 -~~~~~~~~~~-----~~-~-----~~~~~-----~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~ 217 (346)
T PF01120_consen 167 -DYPPDEEGDE-----NG-P-----ADGPG-----NWQRYYNEYWLAQLRELLTRYKPDILWFDGGWP 217 (346)
T ss_dssp -TTTSSCHCHH-----CC--------HCCH-----HHHHHHHHHHHHHHHHHHHCSTESEEEEESTTS
T ss_pred -ccCCCccCCc-----cc-c-----cccch-----hhHhHhhhhhHHHHHHHHhCCCcceEEecCCCC
Confidence 1111000000 00 0 00000 001223 48888998888 58999999998754
No 74
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=85.23 E-value=9.4 Score=38.98 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=70.5
Q ss_pred HHHHHHHHhHHhCCcceEEE-----eeeccc--CCCcceeeCCCCCCCh---HHHHHHHHhCCCeEEEEeCC-ccccCCC
Q 021612 6 EFVRFAGHFVRKVYPVMLYG-----WILTTW--MDFVVSLLTRHRFPDP---KSLAADLHLNGFKAIWMLDP-GIKHEDG 74 (310)
Q Consensus 6 ~v~~~~~~~~~~~iP~d~~~-----~~d~~w--~~~~~ft~d~~~Fpdp---~~mi~~L~~~G~k~~~~v~P-~i~~~~~ 74 (310)
-+.+.+..+++.||-+=-++ =.+-.| +.-+-|.- +.+|-.| +++|+.+|++|+-|++=+.| +...+..
T Consensus 166 ~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp-~sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~~ 244 (628)
T COG0296 166 LAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAP-TSRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDGN 244 (628)
T ss_pred HHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccc-cccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCcc
Confidence 34556666778886432211 011122 22233544 4688877 57999999999999887655 5555443
Q ss_pred cc-ccccccccceeEecCCCCceeEeecCCCccCCCCC-CHHHHHHHHHHHHhHH-hCCccEEEecCCC
Q 021612 75 YF-VYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYT-QSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 140 (310)
Q Consensus 75 ~~-~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft-~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~e 140 (310)
|. .|+.. .+-...+ +..+.. +.-+..+++. .+++|.+.-+.....+ +..|||+-+|.-.
T Consensus 245 ~L~~fdg~----~~~e~~~--~~~~~~-~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~ 306 (628)
T COG0296 245 YLARFDGT----FLYEHED--PRRGEH-TDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVA 306 (628)
T ss_pred hhhhcCCc----cccccCC--cccccC-CCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhh
Confidence 21 12100 0111111 111111 1113445555 9999998776665555 6999999999764
No 75
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=85.07 E-value=4.1 Score=38.81 Aligned_cols=122 Identities=16% Similarity=0.075 Sum_probs=69.2
Q ss_pred HHHHHHHHHhHHhCCcceEEEeeecccCC----CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCcccccc
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWILTTWMD----FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDS 80 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d~~w~~----~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~ 80 (310)
+++.+.++.+++.||-+=.|. ...|.. .+.|.|+ -.+.+++.+++.|+||++.+...-... -+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~--~~~W~~lEP~eG~ydF~-----~lD~~l~~a~~~Gi~viL~~~~~~~P~---Wl~~- 78 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIG--EFSWSWLEPEEGQYDFS-----WLDRVLDLAAKHGIKVILGTPTAAPPA---WLYD- 78 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE---CCEHHHH-SBTTB---H-----HHHHHHHHHHCTT-EEEEEECTTTS-H---HHHC-
T ss_pred HHHHHHHHHHHHcCCCEEEEE--EechhhccCCCCeeecH-----HHHHHHHHHHhccCeEEEEeccccccc---chhh-
Confidence 467888899999999876542 345532 3445443 389999999999999998764221110 0111
Q ss_pred ccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh-----CCccEEEecCCCCcc
Q 021612 81 GSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-----NGVDGIWNDMNEPAV 143 (310)
Q Consensus 81 ~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~-----~Gvdg~w~D~~e~~~ 143 (310)
+-.+....+.+|.... .|.....++.+|..++.....++.+.+ -.|-||-+| ||+..
T Consensus 79 -~~Pe~~~~~~~g~~~~----~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~-NE~~~ 140 (374)
T PF02449_consen 79 -KYPEILPVDADGRRRG----FGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID-NEPGY 140 (374)
T ss_dssp -CSGCCC-B-TTTSBEE----CCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC-CSTTC
T ss_pred -hcccccccCCCCCcCc----cCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec-cccCc
Confidence 0112223344443321 234445688899988887777766542 236788887 78755
No 76
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=84.59 E-value=2.2 Score=31.36 Aligned_cols=56 Identities=21% Similarity=0.471 Sum_probs=39.3
Q ss_pred cccceeEecCCCCceeEeecCCCc---cCCCCCCHHHHHHHHHHHHhHH-hCCccEEEecCC
Q 021612 82 SKIDVWIQKADGTPFIGEVWPGPC---VFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMN 139 (310)
Q Consensus 82 ~~~~~~v~~~~g~~~~~~~w~G~~---~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~ 139 (310)
.....|.++.+|+.. .-|+|.. -..+..+|..+.||.+.+.+.+ ..++||+.+|..
T Consensus 17 ~~~~w~a~~~~g~~i--~~W~~~~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn~ 76 (79)
T PF14885_consen 17 PRADWFAKTANGSRI--SEWPGYPGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADND 76 (79)
T ss_pred cCchhhccccCccce--eecCCCCceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeecc
Confidence 445667777776543 4566643 2256666999999999986544 679999999964
No 77
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=83.99 E-value=7.4 Score=35.53 Aligned_cols=42 Identities=24% Similarity=0.480 Sum_probs=34.4
Q ss_pred ecCCCccCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCCCCc
Q 021612 100 VWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPA 142 (310)
Q Consensus 100 ~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~e~~ 142 (310)
-|||+- .+-|-.|+=++-+...++++.+.|+||+-+|--++.
T Consensus 110 ~W~Gny-~VkYW~~eWkdii~~~l~rL~d~GfdGvyLD~VD~y 151 (300)
T COG2342 110 EWPGNY-AVKYWEPEWKDIIRSYLDRLIDQGFDGVYLDVVDAY 151 (300)
T ss_pred CCCCCc-eeeccCHHHHHHHHHHHHHHHHccCceEEEeeechH
Confidence 388873 346778887777888899999999999999988764
No 78
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.32 E-value=7.5 Score=36.27 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEEEe-CCccccCCCcccccccc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWML-DPGIKHEDGYFVYDSGS 82 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v-~P~i~~~~~~~~y~~~~ 82 (310)
-+||+++++.||+.+|-+.++|+ . . +. .+ |....+.++|..+|+++-+.. .++-..+-.--.-++|.
T Consensus 91 d~dV~RLID~frel~~~v~sVVi-T-q--------ye-d~-p~a~aF~~rLEr~Gikvy~H~~ikGYPtD~~~IvS~EG~ 158 (493)
T COG4868 91 DQDVFRLIDKFRELDIKVGSVVI-T-Q--------YE-DQ-PAADAFRTRLERNGIKVYLHYPIKGYPTDVDHIVSDEGM 158 (493)
T ss_pred hHHHHHHHHHHHhcCeeeeeEEE-E-e--------cC-CC-hhHHHHHHHHHhcCcceEEecccCCCCCchhheeCcccC
Confidence 47899999999999999999765 2 1 22 22 666789999999999986642 22222221111234565
Q ss_pred ccceeEecC
Q 021612 83 KIDVWIQKA 91 (310)
Q Consensus 83 ~~~~~v~~~ 91 (310)
.++-||++.
T Consensus 159 GkN~YieTt 167 (493)
T COG4868 159 GKNAYIETT 167 (493)
T ss_pred Cccchhhcc
Confidence 666677654
No 79
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=77.10 E-value=24 Score=33.92 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=58.5
Q ss_pred HHHHHHHhHHhCCcceEEEeeecccCC--------CcceeeCCCCCC---C-hHHHHHHHHhCCCeEEEEeCCccccCCC
Q 021612 7 FVRFAGHFVRKVYPVMLYGWILTTWMD--------FVVSLLTRHRFP---D-PKSLAADLHLNGFKAIWMLDPGIKHEDG 74 (310)
Q Consensus 7 v~~~~~~~~~~~iP~d~~~~~d~~w~~--------~~~ft~d~~~Fp---d-p~~mi~~L~~~G~k~~~~v~P~i~~~~~ 74 (310)
-.++|+.++++|.-.-++. ...++ ++ .||..+-| | .+++++..+++|+|+.+...+. .-..
T Consensus 83 ~~~Wa~~~k~AGakY~vlT---aKHHDGF~lw~S~~t--~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~~-DW~~- 155 (384)
T smart00812 83 PEEWADLFKKAGAKYVVLT---AKHHDGFCLWDSKYS--NWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSLF-DWFN- 155 (384)
T ss_pred HHHHHHHHHHcCCCeEEee---eeecCCccccCCCCC--CCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCHH-HhCC-
Confidence 3578889999998865542 11111 22 22322222 3 4789999999999999876551 1111
Q ss_pred ccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHH---HHHHHHhHH-hCCccEEEecCCC
Q 021612 75 YFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSW---WGSLVKDFI-YNGVDGIWNDMNE 140 (310)
Q Consensus 75 ~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~w---w~~~~~~~~-~~Gvdg~w~D~~e 140 (310)
+.|... .+.+.. ....+...++ |..+++.|+ ++|-|.+|+|+.=
T Consensus 156 -p~y~~~-------~~~~~~--------------~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 156 -PLYAGP-------TSSDED--------------PDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred -Cccccc-------cccccc--------------cccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 112110 000000 0112223344 478888888 5888999999853
No 80
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.11 E-value=11 Score=26.14 Aligned_cols=57 Identities=14% Similarity=0.278 Sum_probs=37.8
Q ss_pred HHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEE
Q 021612 6 EFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIW 63 (310)
Q Consensus 6 ~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~ 63 (310)
.+.++++.+.++++.+..+......-.......+.-+. ++++..++.|.++|+++..
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-MNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-CCHHHHHHHHHHCCCeeeC
Confidence 45678888999999998853212111223334443333 6778999999999998753
No 81
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=76.03 E-value=8 Score=35.37 Aligned_cols=60 Identities=10% Similarity=-0.029 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC---CcceeeCCCCC--CChHHHHHHHHhCCCeEEEEeC
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD---FVVSLLTRHRF--PDPKSLAADLHLNGFKAIWMLD 66 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~---~~~ft~d~~~F--pdp~~mi~~L~~~G~k~~~~v~ 66 (310)
..+...++++-..++||+-- ++|.+|.. -..+.+. +.. .|.+++++.-+++|+++.+|.+
T Consensus 30 ~t~~~k~yIDfAa~~G~eYv---lvD~GW~~~~~~~~~d~~-~~~~~~dl~elv~Ya~~KgVgi~lw~~ 94 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYV---LVDAGWYGWEKDDDFDFT-KPIPDFDLPELVDYAKEKGVGIWLWYH 94 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEE---EEBTTCCGS--TTT--TT--B-TT--HHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEE---Eecccccccccccccccc-ccCCccCHHHHHHHHHHcCCCEEEEEe
Confidence 46788899999999999984 45999974 1122221 122 4579999999999999999875
No 82
>PRK13663 hypothetical protein; Provisional
Probab=74.32 E-value=24 Score=34.19 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEEE
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWM 64 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~ 64 (310)
-+||+++++.||+.|+=+.++|+ . .++ .=|....+.++|..+|+|+-..
T Consensus 91 d~dVLRLiD~fr~~gl~V~sVVI-T---------qy~--~qp~a~~F~~rLe~~GIkvy~H 139 (493)
T PRK13663 91 DQDVLRLIDDFRELGLYVGSVVI-T---------QYD--GQPAADAFRNRLERLGIKVYRH 139 (493)
T ss_pred hHHHHHHHHHHHhcCceeeeEEE-E---------ecC--CChHHHHHHHHHHHCCCceEEe
Confidence 36899999999999999999765 2 121 1134468999999999998653
No 83
>PF08903 DUF1846: Domain of unknown function (DUF1846); InterPro: IPR014999 This group of proteins are functionally uncharacterised. ; PDB: 3BH1_B.
Probab=71.32 E-value=15 Score=35.66 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEEE
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWM 64 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~ 64 (310)
-+||+++++.||+.|+-+.++|+ . . +.. =|....+.++|..+|+|+-..
T Consensus 90 d~dVLRLid~fr~~gl~V~sVVI-T-~--------y~~--q~~a~~F~~kLe~~gIkvy~H 138 (491)
T PF08903_consen 90 DQDVLRLIDDFRSRGLYVGSVVI-T-Q--------YEG--QPAADAFKNKLERLGIKVYRH 138 (491)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE-E-C--------E-T---HHHHHHHHHHHTTT-EEEEE
T ss_pred hHHHHHHHHHHHhcCceeeeEEE-E-e--------cCC--CHHHHHHHHHHHHCCCcEEEe
Confidence 47999999999999999999765 2 1 221 123467999999999998654
No 84
>smart00642 Aamy Alpha-amylase domain.
Probab=70.35 E-value=14 Score=30.97 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=34.8
Q ss_pred HHHHHHHHHhHHhCCcceEEEeeeccc---------CCC--cc-eeeCCCCCCC---hHHHHHHHHhCCCeEEEEeCC
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWILTTW---------MDF--VV-SLLTRHRFPD---PKSLAADLHLNGFKAIWMLDP 67 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d~~w---------~~~--~~-ft~d~~~Fpd---p~~mi~~L~~~G~k~~~~v~P 67 (310)
+.|.+-++.+++.||-. +|+-.-+ ..| .+ +..++ +|-. .++|++++|++|+++++=+.|
T Consensus 19 ~gi~~~l~yl~~lG~~~---I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~-~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 19 QGIIEKLDYLKDLGVTA---IWLSPIFESPQGYPSYHGYDISDYKQIDP-RFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHHHCCCCE---EEECcceeCCCCCCCCCCcCccccCCCCc-ccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 45555566777877543 2332211 112 12 23332 4544 578999999999999876654
No 85
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=68.13 E-value=45 Score=31.02 Aligned_cols=111 Identities=15% Similarity=0.181 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHhHHhCCcceEEEeeec-ccCCCcceeeCCCCCC---------------ChHHHHHHHHhCCCeEEEEe
Q 021612 2 ILIREFVRFAGHFVRKVYPVMLYGWILT-TWMDFVVSLLTRHRFP---------------DPKSLAADLHLNGFKAIWML 65 (310)
Q Consensus 2 ~~~~~v~~~~~~~~~~~iP~d~~~~~d~-~w~~~~~ft~d~~~Fp---------------dp~~mi~~L~~~G~k~~~~v 65 (310)
.+.+.|+++++.+...++.+=.+.+.|. .| .+.-+.|| +.+++++..+++|+++|+-+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~------rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGF------RIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCc------eeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEee
Confidence 3578999999999999999877665442 34 22222333 35689999999999999887
Q ss_pred C-CccccC--CCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh
Q 021612 66 D-PGIKHE--DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 128 (310)
Q Consensus 66 ~-P~i~~~--~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~ 128 (310)
+ |+=... ..|+.+... .+... ....|.-....+|.++|++.+..++.++.+.+
T Consensus 89 d~PGH~~a~~~~ypel~~~---------~~~~~-~~~~~~~~~~~l~~~~p~t~~f~~~l~~E~~~ 144 (311)
T cd06570 89 DVPGHASAIAVAYPELASG---------PGPYV-IERGWGVFEPLLDPTNEETYTFLDNLFGEMAE 144 (311)
T ss_pred cCccchHHHHHhCHHhccC---------CCccc-cccccccCCCccCCCChhHHHHHHHHHHHHHH
Confidence 6 431110 112211110 00000 01122222346899999999998888877764
No 86
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=66.58 E-value=27 Score=32.07 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCCCc--c--eeeCCCCCCChHHHHHHHHhCCCeEEEEe
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMDFV--V--SLLTRHRFPDPKSLAADLHLNGFKAIWML 65 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~--~--ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v 65 (310)
+-++|+++.++|.+. .+ +|++-+=++.. + ..-..+.|....+-+++|+.+|+|++..+
T Consensus 127 lpd~VldlL~e~~~r---~~--vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgIkvc~Hi 188 (312)
T COG1242 127 LPDDVLDLLAEYNKR---YE--VWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTHL 188 (312)
T ss_pred CcHHHHHHHHHHhhh---eE--EEEEeccchhhHHHHHHHhcccchHHHHHHHHHHHHcCCeEEEEE
Confidence 568999999999988 44 36665555521 1 11223456667888999999999998754
No 87
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=62.54 E-value=1.1e+02 Score=31.88 Aligned_cols=120 Identities=13% Similarity=0.034 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCC-CcceeeCCCCCCCh---------HHHH-HHHHhCCCeEEEEeCCc-ccc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMD-FVVSLLTRHRFPDP---------KSLA-ADLHLNGFKAIWMLDPG-IKH 71 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~~ft~d~~~Fpdp---------~~mi-~~L~~~G~k~~~~v~P~-i~~ 71 (310)
.+++.++++++++.|+-.=.+. -+.+ -++=.++...||+- .-+. +--|..|+||-.|+.|. +..
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lq----afadp~gd~~~~s~yfP~~~lp~r~d~f~~~aw~l~~r~~v~v~AWmp~~~~~~ 408 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQ----AFADPDGDGLVKELYFPNRLLPMRADLFNRVAWQLRTRAGVNVYAWMPVLSFDL 408 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEE----eccCCCCCccccccccCccccccccCCcCHHHHHHHHhhCCEEEEeccceeecc
Confidence 5788899999999998753322 2222 23344555566651 1111 22566799999999987 444
Q ss_pred CCCccccccccccceeEecCCCCc-eeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh-CCccEEEecC
Q 021612 72 EDGYFVYDSGSKIDVWIQKADGTP-FIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDM 138 (310)
Q Consensus 72 ~~~~~~y~~~~~~~~~v~~~~g~~-~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~-~Gvdg~w~D~ 138 (310)
..+... ..+. +.++.+ -+...|.+. +|-++|++++|..+.+..+.. ..|||+-+|-
T Consensus 409 ~~~~~~---~~~~-----~~~~~~~~~~~~~~~r---l~P~~pe~r~~i~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 409 DPTLPR---VKRL-----DTGEGKAQIHPEQYRR---LSPFDDRVRAQVGMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred CCCcch---hhhc-----cccCCccccCCCCCcC---CCCCCHHHHHHHHHHHHHHHHhCCCceEEecc
Confidence 332111 1111 111111 111223223 899999999999999999986 6899998874
No 88
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=62.04 E-value=1.1e+02 Score=32.25 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCC
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMD 33 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~ 33 (310)
.+-|.+=++.|++.|+|-..+ |+|++|++
T Consensus 238 p~GV~~Gv~~l~~gG~pprfv-IIDDGWQs 266 (865)
T PLN02982 238 PVGVWHGVKEFAEGGVPPRFL-IIDDGWQS 266 (865)
T ss_pred HHHHHHHHHHHhcCCCCccEE-EEecchhh
Confidence 466788889999999999984 57999997
No 89
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=61.34 E-value=38 Score=31.25 Aligned_cols=110 Identities=14% Similarity=0.042 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCC---------------------ChHHHHHHHHhCCCeE
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFP---------------------DPKSLAADLHLNGFKA 61 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fp---------------------dp~~mi~~L~~~G~k~ 61 (310)
..+.|+++++.+...++-+=.+.+.|. ..|.+.-+.|| +.+++++..+++|+++
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~-----~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~v 88 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDD-----QAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEV 88 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecC-----CCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEE
Confidence 568899999999999999877665432 12222222222 3468999999999999
Q ss_pred EEEeC-CccccCCCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh
Q 021612 62 IWMLD-PGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 128 (310)
Q Consensus 62 ~~~v~-P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~ 128 (310)
|+-++ |+=... -...|.+.... ..+ +..+......+|.++|++.+..++.++.+.+
T Consensus 89 iPEiD~PGH~~a-~~~~~p~l~~~-----~~~-----~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~ 145 (303)
T cd02742 89 IPEIDMPGHSTA-FVKSFPKLLTE-----CYA-----GLKLRDVFDPLDPTLPKGYDFLDDLFGEIAE 145 (303)
T ss_pred EEeccchHHHHH-HHHhCHHhccC-----ccc-----cCCCCCCCCccCCCCccHHHHHHHHHHHHHH
Confidence 98876 431110 00001111000 001 1122233456899999999988888887764
No 90
>PRK13840 sucrose phosphorylase; Provisional
Probab=59.60 E-value=12 Score=37.27 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=30.2
Q ss_pred cCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCC
Q 021612 106 VFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 139 (310)
Q Consensus 106 ~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~ 139 (310)
.-+|+.||++++...+.++.+.+.|||||=+|.-
T Consensus 162 pDLN~~NP~V~~~i~~il~fwl~~GVDgfRLDAv 195 (495)
T PRK13840 162 IDIDVHSAAGWEYLMSILDRFAASHVTLIRLDAA 195 (495)
T ss_pred ceeCCCCHHHHHHHHHHHHHHHHCCCCEEEEech
Confidence 3468889999999999999888999999999975
No 91
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.74 E-value=34 Score=22.90 Aligned_cols=53 Identities=4% Similarity=-0.077 Sum_probs=34.4
Q ss_pred HHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeE
Q 021612 6 EFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKA 61 (310)
Q Consensus 6 ~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~ 61 (310)
.+.++++.+.++|+.+..+.-......+.....+.-+. ++...+.|+++|+++
T Consensus 12 ~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~---~~~~~~~L~~~G~~v 64 (65)
T cd04882 12 GLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED---IEKAIEVLQERGVEL 64 (65)
T ss_pred HHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC---HHHHHHHHHHCCceE
Confidence 35677788999999987643222222233334443332 789999999999975
No 92
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=56.77 E-value=43 Score=29.77 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=37.6
Q ss_pred hHHHHHHHHhCCCeEEEEeCCccccCCCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhH
Q 021612 47 PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 126 (310)
Q Consensus 47 p~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~ 126 (310)
.++.++.||++|+||++.+.-.-.. .+ + --..++++++=+.+.+..+
T Consensus 53 ~~~~i~~l~~kG~KVl~sigg~~~~-~~---~-----------------------------~~~~~~~~~~~fa~~l~~~ 99 (255)
T cd06542 53 KETYIRPLQAKGTKVLLSILGNHLG-AG---F-----------------------------ANNLSDAAAKAYAKAIVDT 99 (255)
T ss_pred HHHHHHHHhhCCCEEEEEECCCCCC-CC---c-----------------------------cccCCHHHHHHHHHHHHHH
Confidence 4689999999999998876421000 00 0 0113455555455555555
Q ss_pred H-hCCccEEEecCC
Q 021612 127 I-YNGVDGIWNDMN 139 (310)
Q Consensus 127 ~-~~Gvdg~w~D~~ 139 (310)
+ ++|+||+=+|.-
T Consensus 100 v~~yglDGiDiD~E 113 (255)
T cd06542 100 VDKYGLDGVDFDDE 113 (255)
T ss_pred HHHhCCCceEEeee
Confidence 4 799999999973
No 93
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=56.39 E-value=87 Score=30.77 Aligned_cols=125 Identities=8% Similarity=0.041 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeee-cccCC-------------CcceeeCC-------------------CCCC--Ch
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWIL-TTWMD-------------FVVSLLTR-------------------HRFP--DP 47 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d-~~w~~-------------~~~ft~d~-------------------~~Fp--dp 47 (310)
..++|+++++.+...++-.=.+.+.| ..|.= ++.++... ..|. +.
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di 99 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADY 99 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHH
Confidence 57899999999999999988877654 34531 11111110 1122 35
Q ss_pred HHHHHHHHhCCCeEEEEeC-Ccccc------CCCccccccc-c---ccceeEecCCC-CceeEeecCCCccCCCCCCHHH
Q 021612 48 KSLAADLHLNGFKAIWMLD-PGIKH------EDGYFVYDSG-S---KIDVWIQKADG-TPFIGEVWPGPCVFPDYTQSKV 115 (310)
Q Consensus 48 ~~mi~~L~~~G~k~~~~v~-P~i~~------~~~~~~y~~~-~---~~~~~v~~~~g-~~~~~~~w~G~~~~~Dft~p~a 115 (310)
+++++..+++|++||+-|+ |+=.. ...|+.+... . +..+.+.++.. ..+. ..+.-....+|-++|++
T Consensus 100 ~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~g~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~L~p~~~~t 178 (445)
T cd06569 100 IEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAAGKPAEAEEYRLSDPADTSQYL-SVQFYTDNVINPCMPST 178 (445)
T ss_pred HHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhccCCccccccccccCcccccccc-cccccccccccCCchhH
Confidence 7899999999999998876 43111 1123222111 0 11122222211 1111 11111235689999999
Q ss_pred HHHHHHHHHhHHh
Q 021612 116 RSWWGSLVKDFIY 128 (310)
Q Consensus 116 ~~ww~~~~~~~~~ 128 (310)
.+...+.++.+.+
T Consensus 179 y~fl~~vl~Ev~~ 191 (445)
T cd06569 179 YRFVDKVIDEIAR 191 (445)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888877654
No 94
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=55.83 E-value=42 Score=30.00 Aligned_cols=50 Identities=10% Similarity=0.035 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCCh---HHHHHHHHhCCCeEEE
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDP---KSLAADLHLNGFKAIW 63 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp---~~mi~~L~~~G~k~~~ 63 (310)
.+.++++++.+++.|+|+|.|.+ - ++ + . ..+|++ ++.++.|.+.|..+.+
T Consensus 135 ~~~~~~~v~~l~~~g~~iDgiGl-Q--~H----~--~-~~~~~~~~~~~~l~~~~~~g~pi~i 187 (254)
T smart00633 135 RQAIYELVKKLKAKGVPIDGIGL-Q--SH----L--S-LGSPNIAEIRAALDRFASLGLEIQI 187 (254)
T ss_pred HHHHHHHHHHHHHCCCccceeee-e--ee----e--c-CCCCCHHHHHHHHHHHHHcCCceEE
Confidence 35778899999999999998753 1 11 1 1 122554 5667777777877654
No 95
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=55.05 E-value=36 Score=30.44 Aligned_cols=60 Identities=10% Similarity=0.016 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC-CcceeeCCCCCCChHHHHHHHHhCCCeEEEE
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWM 64 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~-~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~ 64 (310)
..+++.++++-+.+++||..+.++ ..+.+ ...-+++-...|+..+.++.+.++|-.+++.
T Consensus 14 ~~~~l~~i~d~l~~~~ipf~v~vI--P~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lH 74 (243)
T PF10096_consen 14 DLEKLKEIADYLYKYGIPFSVAVI--PVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLH 74 (243)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEE--ecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEE
Confidence 367889999999999999887653 34443 2222333334555667778888899987763
No 96
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=54.32 E-value=16 Score=34.12 Aligned_cols=52 Identities=6% Similarity=-0.076 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEE
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIW 63 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~ 63 (310)
.+.++++++.+++.|+|+|.|.+ -.+ |.-+.. -....++++++.+.|+.+.+
T Consensus 187 ~~~~~~lv~~l~~~gvpIdgIG~-Q~H------~~~~~~-~~~i~~~l~~~~~~Gl~i~I 238 (320)
T PF00331_consen 187 RDAYLNLVKDLKARGVPIDGIGL-QSH------FDAGYP-PEQIWNALDRFASLGLPIHI 238 (320)
T ss_dssp HHHHHHHHHHHHHTTHCS-EEEE-EEE------EETTSS-HHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHhCCCccceech-hhc------cCCCCC-HHHHHHHHHHHHHcCCceEE
Confidence 46799999999999999999753 211 111111 12357888999999988754
No 97
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=53.51 E-value=39 Score=31.46 Aligned_cols=121 Identities=13% Similarity=0.162 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHhHHhCCcceEEEeeec-ccC----CCcc----eeeCCC----CC--CChHHHHHHHHhCCCeEEEEeC
Q 021612 2 ILIREFVRFAGHFVRKVYPVMLYGWILT-TWM----DFVV----SLLTRH----RF--PDPKSLAADLHLNGFKAIWMLD 66 (310)
Q Consensus 2 ~~~~~v~~~~~~~~~~~iP~d~~~~~d~-~w~----~~~~----ft~d~~----~F--pdp~~mi~~L~~~G~k~~~~v~ 66 (310)
...+.|+++++.+...++-.=.+.+.|. .|. .+.. ..+... .| -+.+++++..+++|++||+-|+
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPeid 94 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEID 94 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeecc
Confidence 3578999999999999999766665442 222 0111 111111 12 2467899999999999998876
Q ss_pred -CccccC--CCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh
Q 021612 67 -PGIKHE--DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 128 (310)
Q Consensus 67 -P~i~~~--~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~ 128 (310)
|+=... ..|+.+... . + ..+.+......+......+|.++|++.+...+.++.+.+
T Consensus 95 ~PGH~~~~l~~~p~~~~~---~-~--~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~ 153 (351)
T PF00728_consen 95 TPGHAEAWLKAYPELGCS---A-W--PEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVAD 153 (351)
T ss_dssp ESSS-HHHHHHHHHHCCC---H-T--TCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHhCchhhcc---c-c--ccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHh
Confidence 431110 111111110 0 0 001111112222233457899999999999988887764
No 98
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=52.63 E-value=35 Score=27.30 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhHHhCCcceEEEeeecccCC--CcceeeCCCCCCChHHHHHHHHh
Q 021612 2 ILIREFVRFAGHFVRKVYPVMLYGWILTTWMD--FVVSLLTRHRFPDPKSLAADLHL 56 (310)
Q Consensus 2 ~~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~--~~~ft~d~~~Fpdp~~mi~~L~~ 56 (310)
.+++||..+++.+|++||.+..| +.+|.. -+.|-.-=..--||.++.+.+++
T Consensus 65 ll~~EV~pvi~aL~~~GI~vtAl---HNH~l~e~Prl~ymH~~~~gdp~~lA~~vr~ 118 (123)
T PF07485_consen 65 LLEDEVNPVISALRKNGIEVTAL---HNHWLFEQPRLFYMHIWGVGDPAKLARKVRA 118 (123)
T ss_pred ecHHHHHHHHHHHHHCCceEEEE---ecccccCCCCEEEEEEEecCCHHHHHHHHHH
Confidence 47899999999999999999985 556643 22221211233478888877765
No 99
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=52.50 E-value=71 Score=21.79 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=36.5
Q ss_pred HHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEE
Q 021612 6 EFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAI 62 (310)
Q Consensus 6 ~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~ 62 (310)
.+.++++.+.++|+.+..+..... .+...+.++. .|++...+.|.++|+++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~--~~~~~~rl~~---~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADT--SEFGILRLIV---SDPDKAKEALKEAGFAVK 65 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEec--CCCCEEEEEE---CCHHHHHHHHHHCCCEEE
Confidence 356788899999999988653221 2234444432 568899999999999874
No 100
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.57 E-value=36 Score=23.36 Aligned_cols=54 Identities=6% Similarity=-0.038 Sum_probs=36.3
Q ss_pred HHHHHHHHhHHhCCcceEEEeeec--ccCCCcceeeCCCCCCChHHHHHHHHhCCCeE
Q 021612 6 EFVRFAGHFVRKVYPVMLYGWILT--TWMDFVVSLLTRHRFPDPKSLAADLHLNGFKA 61 (310)
Q Consensus 6 ~v~~~~~~~~~~~iP~d~~~~~d~--~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~ 61 (310)
.+.++++.+.++|+.+..+..... +......++++-. .+.++.++.|+++|+++
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ--EDRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH--HHHHHHHHHHHHcCCcC
Confidence 466788899999999987532221 1222334666422 36789999999999864
No 101
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=49.54 E-value=23 Score=35.03 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=30.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhHHhCCccEEEecCC
Q 021612 106 VFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 139 (310)
Q Consensus 106 ~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~ 139 (310)
.-+||.||++++...+.++.+.+.|||||=+|.-
T Consensus 158 pDLN~~np~v~e~i~~il~fwl~~GvdgfRLDAv 191 (470)
T TIGR03852 158 IDLDVTSETTKRFIRDNLENLAEHGASIIRLDAF 191 (470)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 4478889999999999999888999999999987
No 102
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=48.40 E-value=1.2e+02 Score=28.38 Aligned_cols=116 Identities=10% Similarity=0.059 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeee-cccCC----CcceeeC----------CCCCC--ChHHHHHHHHhCCCeEEEEe
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWIL-TTWMD----FVVSLLT----------RHRFP--DPKSLAADLHLNGFKAIWML 65 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d-~~w~~----~~~ft~d----------~~~Fp--dp~~mi~~L~~~G~k~~~~v 65 (310)
..+.|+++++.+...++-.=.+.+.| ..|.- +-.+|-. ...|. +.+++++..+++|+++|+-+
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEec
Confidence 56889999999999999988776654 34431 2222210 01122 35789999999999999887
Q ss_pred C-CccccC--CCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh
Q 021612 66 D-PGIKHE--DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 128 (310)
Q Consensus 66 ~-P~i~~~--~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~ 128 (310)
+ |+=... ..|+.+.. .+. ....+. .+.-....+|.++|++.+..++.++.+.+
T Consensus 96 D~PGH~~a~~~~~p~l~~---~~~-----~~~~~~--~~~~~~~~l~~~~~~t~~fl~~v~~E~~~ 151 (329)
T cd06568 96 DMPGHTNAALAAYPELNC---DGK-----AKPLYT--GIEVGFSSLDVDKPTTYEFVDDVFRELAA 151 (329)
T ss_pred CCcHHHHHHHHhChhhcc---CCC-----CCcccc--ccCCCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 6 431110 11221111 000 000110 01011245799999999988888887764
No 103
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=47.86 E-value=19 Score=25.95 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=16.8
Q ss_pred ChHHHHHHHHhCCCeEEEEeCCc
Q 021612 46 DPKSLAADLHLNGFKAIWMLDPG 68 (310)
Q Consensus 46 dp~~mi~~L~~~G~k~~~~v~P~ 68 (310)
.+++.|+.||++|.+++..++-+
T Consensus 37 ~~~~~I~~L~~~G~~vicY~s~G 59 (74)
T PF03537_consen 37 FSKEEIARLKAQGKKVICYFSIG 59 (74)
T ss_dssp --HHHHHHHHHTT-EEEEEEESS
T ss_pred CCHHHHHHHHHCCCEEEEEEeCc
Confidence 56899999999999988776543
No 104
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=46.89 E-value=46 Score=30.02 Aligned_cols=68 Identities=13% Similarity=0.221 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhHHh--CCcceEEEeeecccC----C---------CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCc
Q 021612 4 IREFVRFAGHFVRK--VYPVMLYGWILTTWM----D---------FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPG 68 (310)
Q Consensus 4 ~~~v~~~~~~~~~~--~iP~d~~~~~d~~w~----~---------~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~ 68 (310)
.++++++++++|+. ++|+..+.....-+. . .....+--.-+....++++.+++.|++.++.+.|.
T Consensus 71 ~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~ 150 (256)
T TIGR00262 71 PEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPN 150 (256)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCC
Confidence 47899999999975 789875433221111 0 01122221222335678888888888888888877
Q ss_pred ccc
Q 021612 69 IKH 71 (310)
Q Consensus 69 i~~ 71 (310)
...
T Consensus 151 T~~ 153 (256)
T TIGR00262 151 ADD 153 (256)
T ss_pred CCH
Confidence 543
No 105
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=46.44 E-value=77 Score=29.53 Aligned_cols=109 Identities=9% Similarity=-0.019 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC----Cccee--------------------eCCCCCC--ChHHHHHHHHh
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD----FVVSL--------------------LTRHRFP--DPKSLAADLHL 56 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~----~~~ft--------------------~d~~~Fp--dp~~mi~~L~~ 56 (310)
+.+.|+++++.+...++-.=.+.+.| .|.= +...+ -....|. +.+++++..++
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD-~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~ 93 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLND-NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKD 93 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecC-CcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHH
Confidence 57889999999999999987766544 4431 10000 0111222 35789999999
Q ss_pred CCCeEEEEeC-Ccccc--CCCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh
Q 021612 57 NGFKAIWMLD-PGIKH--EDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 128 (310)
Q Consensus 57 ~G~k~~~~v~-P~i~~--~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~ 128 (310)
+|+++|+-++ |+=.. -..|+.+. ..+ . ..+ +....+|.++|++.+..++.++.+.+
T Consensus 94 rgI~vIPEID~PGH~~a~~~~~pel~---~~~-----~-------~~~-~~~~~l~~~~~~t~~f~~~l~~E~~~ 152 (326)
T cd06564 94 RGVNIIPEIDSPGHSLAFTKAMPELG---LKN-----P-------FSK-YDKDTLDISNPEAVKFVKALFDEYLD 152 (326)
T ss_pred cCCeEeccCCCcHHHHHHHHhhHHhc---CCC-----c-------ccC-CCcccccCCCHHHHHHHHHHHHHHHH
Confidence 9999998776 43111 01111110 000 0 011 23456799999999988888887763
No 106
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=45.76 E-value=70 Score=33.01 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=26.3
Q ss_pred CCCCCHH--HHHHHH-HHHHhHHhCCccEEEecCC
Q 021612 108 PDYTQSK--VRSWWG-SLVKDFIYNGVDGIWNDMN 139 (310)
Q Consensus 108 ~Dft~p~--a~~ww~-~~~~~~~~~Gvdg~w~D~~ 139 (310)
++|.||. +++=.. +-+..+.+.|++||-+|.+
T Consensus 262 LNw~dPs~av~~~~~gdal~~w~~lG~~GfRLDAv 296 (688)
T TIGR02455 262 LNWLDPTFAAQQLIIGDALHAIDCLGARGLRLDAN 296 (688)
T ss_pred cCccCccHHHHHHHHHHHHHHHHHhccccceeccc
Confidence 6888999 776555 6777788999999999975
No 107
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=45.64 E-value=21 Score=21.04 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=12.3
Q ss_pred HHHhHHhCCccEEEecC
Q 021612 122 LVKDFIYNGVDGIWNDM 138 (310)
Q Consensus 122 ~~~~~~~~Gvdg~w~D~ 138 (310)
..+.+++.||||+..|.
T Consensus 12 ~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 12 SWRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHHT-SEEEES-
T ss_pred HHHHHHHcCCCEeeCCC
Confidence 44677899999998874
No 108
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=45.15 E-value=1.8e+02 Score=27.43 Aligned_cols=116 Identities=12% Similarity=0.094 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeec-ccCC----Cccee----eC-----------------CCCC--CChHHHHHHH
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILT-TWMD----FVVSL----LT-----------------RHRF--PDPKSLAADL 54 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~-~w~~----~~~ft----~d-----------------~~~F--pdp~~mi~~L 54 (310)
+.+.|+++++.+...++-.=.+.+.|. .|.= +..++ +. ...| .+.+++++..
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA 95 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYA 95 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHH
Confidence 568899999999999999877665442 3420 11111 00 0112 1357899999
Q ss_pred HhCCCeEEEEeC-Ccccc--CCCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh
Q 021612 55 HLNGFKAIWMLD-PGIKH--EDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 128 (310)
Q Consensus 55 ~~~G~k~~~~v~-P~i~~--~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~ 128 (310)
+++|+++|+-|+ |+=.. -..|+.+... .....+ . .........+|.++|++.+..++.++.+.+
T Consensus 96 ~~rgI~VIPEID~PGH~~a~l~~~pel~~~--------~~~~~~-~-~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~ 162 (357)
T cd06563 96 AERGITVIPEIDMPGHALAALAAYPELGCT--------GGPGSV-V-SVQGVVSNVLCPGKPETYTFLEDVLDEVAE 162 (357)
T ss_pred HHcCCEEEEecCCchhHHHHHHhCccccCC--------CCCCcc-c-cccCcCCCccCCCChhHHHHHHHHHHHHHH
Confidence 999999998876 43111 0012111110 000000 0 001112456899999999999888887764
No 109
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=44.17 E-value=96 Score=28.70 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=38.4
Q ss_pred hHHHHHHHHhCCCeEEEEeCCccccCCCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhH
Q 021612 47 PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 126 (310)
Q Consensus 47 p~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~ 126 (310)
..+-|+.+|++|+||++.+--. . + . ..+.+++.++-+.+.+.++
T Consensus 62 ~~~~i~~~q~~G~KVllSiGG~----~-------------------~----------~---~~~~~~~~~~~fa~sl~~~ 105 (312)
T cd02871 62 FKADIKALQAKGKKVLISIGGA----N-------------------G----------H---VDLNHTAQEDNFVDSIVAI 105 (312)
T ss_pred HHHHHHHHHHCCCEEEEEEeCC----C-------------------C----------c---cccCCHHHHHHHHHHHHHH
Confidence 3566788999999999875210 0 0 0 0134566666666666665
Q ss_pred H-hCCccEEEecCCC
Q 021612 127 I-YNGVDGIWNDMNE 140 (310)
Q Consensus 127 ~-~~Gvdg~w~D~~e 140 (310)
+ +.|+||+=+|.=.
T Consensus 106 ~~~~g~DGiDiD~E~ 120 (312)
T cd02871 106 IKEYGFDGLDIDLES 120 (312)
T ss_pred HHHhCCCeEEEeccc
Confidence 5 6999999999743
No 110
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=43.28 E-value=48 Score=29.89 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCeEEEE-eCCccccCCC
Q 021612 49 SLAADLHLNGFKAIWM-LDPGIKHEDG 74 (310)
Q Consensus 49 ~mi~~L~~~G~k~~~~-v~P~i~~~~~ 74 (310)
.+-..|+++|+|+... +||+++.+.+
T Consensus 21 s~g~ll~~~g~~v~~~K~DpYlNvd~G 47 (255)
T cd03113 21 SLGRLLKARGLKVTAQKLDPYLNVDPG 47 (255)
T ss_pred HHHHHHHHCCCeEEEEeecccccCCCC
Confidence 3456799999999766 9999998865
No 111
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=42.66 E-value=41 Score=31.41 Aligned_cols=65 Identities=12% Similarity=-0.134 Sum_probs=38.8
Q ss_pred HHHHHHHHhHHhCCcceEEEeeecccCC--CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCC
Q 021612 6 EFVRFAGHFVRKVYPVMLYGWILTTWMD--FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHED 73 (310)
Q Consensus 6 ~v~~~~~~~~~~~iP~d~~~~~d~~w~~--~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~ 73 (310)
.-.+..+++++.|+-+=.+- +...++. .+.|.|. -.-|...+++..+++|++|++..-|+|+.+.
T Consensus 25 ~W~~~l~k~ka~G~n~v~~y-v~W~~he~~~g~~df~--g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~ 91 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTY-VPWNLHEPEEGQFDFT--GNRDLDRFLDLAQENGLYVILRPGPYICAEW 91 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE---HHHHSSBTTB---S--GGG-HHHHHHHHHHTT-EEEEEEES---TTB
T ss_pred HHHHHHHHHHhCCcceEEEe-ccccccCCCCCccccc--chhhHHHHHHHHHHcCcEEEecccceecccc
Confidence 34566778999998854321 1222333 4566664 2368999999999999999999999998864
No 112
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=41.73 E-value=29 Score=30.13 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=34.4
Q ss_pred cceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCC
Q 021612 35 VVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHED 73 (310)
Q Consensus 35 ~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~ 73 (310)
.-|||--+.=.++.++++++|++|+|+.+.+.|.-..+.
T Consensus 89 s~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~ 127 (224)
T KOG3111|consen 89 SLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVED 127 (224)
T ss_pred ceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHH
Confidence 568888888788999999999999999999999977754
No 113
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=40.59 E-value=39 Score=30.77 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=23.0
Q ss_pred HHHHHHHhCCCeEEEE-eCCccccCCC-ccccccccccceeEecC
Q 021612 49 SLAADLHLNGFKAIWM-LDPGIKHEDG-YFVYDSGSKIDVWIQKA 91 (310)
Q Consensus 49 ~mi~~L~~~G~k~~~~-v~P~i~~~~~-~~~y~~~~~~~~~v~~~ 91 (310)
.+-.-|+.+|+||... +||+++.|.+ ...|.. -.+||.+.
T Consensus 22 Sig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qH---GEVfVt~D 63 (276)
T PF06418_consen 22 SIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQH---GEVFVTDD 63 (276)
T ss_dssp HHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTC---S-EEE-TT
T ss_pred HHHHHHHhCCeeeeeeeeccccccCCCCCCCcCc---cceeEecC
Confidence 3446799999999766 9999999865 122333 35677554
No 114
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=40.40 E-value=64 Score=26.08 Aligned_cols=58 Identities=9% Similarity=-0.012 Sum_probs=31.6
Q ss_pred HHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEE
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIW 63 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~ 63 (310)
++-.+-+...++.|+|-.+.+.++.+ .+..+-+++..--|=.++..+.|+..|+|+.+
T Consensus 77 ~dA~~A~~~A~~lG~p~gt~IYfavD-~d~~~~~~~~~i~~Y~~g~~~~l~~~gY~~Gv 134 (136)
T PF08924_consen 77 ADARDAVAAARALGFPAGTPIYFAVD-YDATDAECDSAILPYFRGWNSALGASGYRPGV 134 (136)
T ss_dssp HHHHHHHHHHHHTT--SS-EEEEE---TS-B-HH-------HHHHHHHHHGGGT-EEEE
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEee-cCCCchhhhhHHHHHHHHHHHHHhhCCCccee
Confidence 34455667788999999887777766 33445555554445568999999999998754
No 115
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=39.34 E-value=63 Score=28.75 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=14.7
Q ss_pred HHHhHHhCCccEEEecCCC
Q 021612 122 LVKDFIYNGVDGIWNDMNE 140 (310)
Q Consensus 122 ~~~~~~~~Gvdg~w~D~~e 140 (310)
.++.+.+.||||+..|.-+
T Consensus 222 ~~~~l~~~GVdgIiTD~p~ 240 (249)
T PRK09454 222 RARELLRWGVDCICTDRID 240 (249)
T ss_pred HHHHHHHcCCCEEEeCChH
Confidence 4567788999999998543
No 116
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=39.16 E-value=68 Score=28.24 Aligned_cols=62 Identities=8% Similarity=0.023 Sum_probs=41.0
Q ss_pred HHHHhHHh--CCcceEEEee-ec--ccCC------CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccC
Q 021612 10 FAGHFVRK--VYPVMLYGWI-LT--TWMD------FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHE 72 (310)
Q Consensus 10 ~~~~~~~~--~iP~d~~~~~-d~--~w~~------~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~ 72 (310)
+++.+|+. .+|+|+ .+- .. .|-+ -.-.++--|.=+++..+++.+|+.|+|..+.++|.-..+
T Consensus 48 ~i~~i~~~~~~~~~dv-HLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~ 120 (220)
T PRK08883 48 ICKALRDYGITAPIDV-HLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLH 120 (220)
T ss_pred HHHHHHHhCCCCCEEE-EeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 45566664 688887 321 11 1110 133566666557889999999999999999999986543
No 117
>PRK15063 isocitrate lyase; Provisional
Probab=36.11 E-value=73 Score=31.08 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCC--hHHHHHHHHhCCCeEEEEeCC
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPD--PKSLAADLHLNGFKAIWMLDP 67 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpd--p~~mi~~L~~~G~k~~~~v~P 67 (310)
..+++.++++.++ ..+|.-.+... .--.|+|... |.| .+.++++|.++|++++++--+
T Consensus 289 d~ee~~~fa~~v~-~~~P~~~layn-----~sPsfnW~~~-~~~~~~~~f~~eL~~~Gy~~~~~~la 348 (428)
T PRK15063 289 DLEEARRFAEAIH-AKFPGKLLAYN-----CSPSFNWKKN-LDDATIAKFQRELGAMGYKFQFITLA 348 (428)
T ss_pred CHHHHHHHHHhhc-ccCccceeecC-----CCCCcccccc-cCHHHHHHHHHHHHHcCceEEEechH
Confidence 4577778887764 44675443211 1236899865 776 478999999999998876433
No 118
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=35.03 E-value=91 Score=29.07 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=16.7
Q ss_pred HHHHhHHhCCccEEEecCCC
Q 021612 121 SLVKDFIYNGVDGIWNDMNE 140 (310)
Q Consensus 121 ~~~~~~~~~Gvdg~w~D~~e 140 (310)
+.++++.+.|+||+|.|--|
T Consensus 286 ~~~~~l~~~~~~gi~T~r~~ 305 (309)
T cd08613 286 EDLKRLPEGFTGYIWTNKIE 305 (309)
T ss_pred HHHHHHHhhCCCeEEeCCHh
Confidence 47788899999999999644
No 119
>PRK06769 hypothetical protein; Validated
Probab=34.86 E-value=48 Score=27.69 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHhCCCeEEEE
Q 021612 42 HRFPDPKSLAADLHLNGFKAIWM 64 (310)
Q Consensus 42 ~~Fpdp~~mi~~L~~~G~k~~~~ 64 (310)
+.||+.+++++.||++|+++.+.
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~ 50 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSF 50 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEE
Confidence 46899999999999999998764
No 120
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=34.40 E-value=68 Score=28.69 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHhHHhCCcceEEEeeecccCC----CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccc
Q 021612 1 MILIREFVRFAGHFVRKVYPVMLYGWILTTWMD----FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIK 70 (310)
Q Consensus 1 ~~~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~----~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~ 70 (310)
|+..+|++++|-+++ |-.+ ++...=.+ -+.|.. ...+...+..++.||+.|++|.+-++|-..
T Consensus 69 ~a~~~emi~ia~~vk----P~~v--tLVPEkr~ElTTegGldv-~~~~~~l~~~i~~l~~~gI~VSLFiDP~~~ 135 (237)
T TIGR00559 69 MAPTEEMIRIAEEIK----PEQV--TLVPEARDEVTTEGGLDV-ARLKDKLCELVKRFHAAGIEVSLFIDADKD 135 (237)
T ss_pred cCCCHHHHHHHHHcC----CCEE--EECCCCCCCccCCcCchh-hhCHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 345667777776665 4433 22221111 344555 245666899999999999999999998743
No 121
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=34.37 E-value=50 Score=27.45 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHhCCCeEEEEe
Q 021612 42 HRFPDPKSLAADLHLNGFKAIWML 65 (310)
Q Consensus 42 ~~Fpdp~~mi~~L~~~G~k~~~~v 65 (310)
.-||+..+++++|+++|+++++..
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvS 52 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVT 52 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEe
Confidence 457899999999999999987643
No 122
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=34.29 E-value=1.8e+02 Score=26.59 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.5
Q ss_pred CCCChHHHHHHHHhCCCeEEEEe
Q 021612 43 RFPDPKSLAADLHLNGFKAIWML 65 (310)
Q Consensus 43 ~Fpdp~~mi~~L~~~G~k~~~~v 65 (310)
..|...+-|+.++++|+||++.+
T Consensus 57 ~c~~~~~dI~~cq~~G~KVlLSI 79 (280)
T cd02877 57 NCPQLGADIKHCQSKGKKVLLSI 79 (280)
T ss_pred cchhHHHHHHHHHHCCCEEEEEc
Confidence 34678899999999999999865
No 123
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=34.14 E-value=95 Score=29.95 Aligned_cols=54 Identities=6% Similarity=-0.022 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIK 70 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~ 70 (310)
-++|++=++.++++|+++.++ .+.++.+...++++++.+++.|++.+ .+.|.+.
T Consensus 152 f~~v~~~i~~l~~~gi~~~i~------------~vv~~~n~~~~~e~~~~~~~lg~~~~-~~~p~~~ 205 (412)
T PRK13745 152 FVKVMKGINLLKKHGVEWNAM------------AVVNDFNADYPLDFYHFFKELDCHYI-QFAPIVE 205 (412)
T ss_pred HHHHHHHHHHHHHcCCCEEEE------------EEEcCCccccHHHHHHHHHHcCCCeE-EEEeccC
Confidence 456777778888999988763 45667778889999999999999864 3444443
No 124
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=33.80 E-value=95 Score=27.43 Aligned_cols=62 Identities=8% Similarity=0.066 Sum_probs=40.7
Q ss_pred HHHHhHHh--CCcceEEEee-ec--ccCC------CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccC
Q 021612 10 FAGHFVRK--VYPVMLYGWI-LT--TWMD------FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHE 72 (310)
Q Consensus 10 ~~~~~~~~--~iP~d~~~~~-d~--~w~~------~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~ 72 (310)
+++.+|+. .+|+|+ .+- .. .|-+ -.-.++--+.=+++..+++.+|+.|+|..+.++|.-..+
T Consensus 52 ~i~~lr~~~~~~~~dv-HLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~ 124 (223)
T PRK08745 52 VCQALRKHGITAPIDV-HLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVD 124 (223)
T ss_pred HHHHHHhhCCCCCEEE-EeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHH
Confidence 45566664 688887 321 11 1110 123455555557789999999999999999999986554
No 125
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=32.90 E-value=1.1e+02 Score=28.06 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=39.5
Q ss_pred hHHHHHHHHhCCCeEEEEeCCccccCCCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhH
Q 021612 47 PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDF 126 (310)
Q Consensus 47 p~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~ 126 (310)
.+.+++..|++|+|+++.|.=.-. + .+.. +. .--=+.+|++|+-+-+.+.++
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~---~--~~~~-------------~~----------~~~~l~~~~~r~~fi~~iv~~ 98 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTN---G--NFDS-------------EL----------AHAVLSNPEARQRLINNILAL 98 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCC---C--CCCH-------------HH----------HHHHhcCHHHHHHHHHHHHHH
Confidence 468999999999999876531110 0 0000 00 000124677777665565555
Q ss_pred H-hCCccEEEecCC
Q 021612 127 I-YNGVDGIWNDMN 139 (310)
Q Consensus 127 ~-~~Gvdg~w~D~~ 139 (310)
+ +.|+||+=+|.-
T Consensus 99 l~~~~~DGidiDwE 112 (313)
T cd02874 99 AKKYGYDGVNIDFE 112 (313)
T ss_pred HHHhCCCcEEEecc
Confidence 5 799999999973
No 126
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=32.46 E-value=1.3e+02 Score=28.55 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=40.0
Q ss_pred CCC-hHHHHHHHHhCCCeEEEEeCCccccCCCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHH-HH
Q 021612 44 FPD-PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWW-GS 121 (310)
Q Consensus 44 Fpd-p~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww-~~ 121 (310)
|-+ +++++...|++|+|+++.. .+ . .....+|+.|+=| .+
T Consensus 62 ~~~~~~~~~~~A~~~~v~v~~~~--------~~-~-----------------------------~~~l~~~~~R~~fi~s 103 (358)
T cd02875 62 FGDIDDELLCYAHSKGVRLVLKG--------DV-P-----------------------------LEQISNPTYRTQWIQQ 103 (358)
T ss_pred cCCCCHHHHHHHHHcCCEEEEEC--------cc-C-----------------------------HHHcCCHHHHHHHHHH
Confidence 444 3699999999999987531 00 0 0135678888744 44
Q ss_pred HHHhHHhCCccEEEecCCCC
Q 021612 122 LVKDFIYNGVDGIWNDMNEP 141 (310)
Q Consensus 122 ~~~~~~~~Gvdg~w~D~~e~ 141 (310)
.++-+.+.|+||+=+|.--|
T Consensus 104 iv~~~~~~gfDGIdIDwE~p 123 (358)
T cd02875 104 KVELAKSQFMDGINIDIEQP 123 (358)
T ss_pred HHHHHHHhCCCeEEEcccCC
Confidence 44555579999999998544
No 127
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=32.25 E-value=2.4e+02 Score=25.06 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=30.2
Q ss_pred ceeeCCCC-CCChHHHHHHHHhCCCeEEEEeCCccccC
Q 021612 36 VSLLTRHR-FPDPKSLAADLHLNGFKAIWMLDPGIKHE 72 (310)
Q Consensus 36 ~ft~d~~~-Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~ 72 (310)
-.++-.+. ..++..+++.+|+.|+|..+.++|.-..+
T Consensus 85 ~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~ 122 (229)
T PRK09722 85 FITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVE 122 (229)
T ss_pred EEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHH
Confidence 35777775 46799999999999999999999986554
No 128
>PRK05380 pyrG CTP synthetase; Validated
Probab=32.19 E-value=53 Score=33.00 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCeEEEE-eCCccccCCC
Q 021612 49 SLAADLHLNGFKAIWM-LDPGIKHEDG 74 (310)
Q Consensus 49 ~mi~~L~~~G~k~~~~-v~P~i~~~~~ 74 (310)
.+-.-|+++|+||... +||+++.|.+
T Consensus 23 s~g~ll~~~g~~v~~~K~DpYlNvd~G 49 (533)
T PRK05380 23 SLGRLLKARGLKVTIQKLDPYINVDPG 49 (533)
T ss_pred HHHHHHHhCCCceEEEeeccccccCCC
Confidence 3446799999999766 9999998754
No 129
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=31.95 E-value=57 Score=27.19 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=19.5
Q ss_pred CCCChHHHHHHHHhCCCeEEEE
Q 021612 43 RFPDPKSLAADLHLNGFKAIWM 64 (310)
Q Consensus 43 ~Fpdp~~mi~~L~~~G~k~~~~ 64 (310)
-||...+++++|+++|+++++.
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~ 48 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLV 48 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEE
Confidence 5789999999999999998764
No 130
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.87 E-value=1.1e+02 Score=20.32 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=33.9
Q ss_pred HHHHHHHhHHhCCcceEEEeeeccc----CC--CcceeeCCCCCCChHHHHHHHHhCCCeEE
Q 021612 7 FVRFAGHFVRKVYPVMLYGWILTTW----MD--FVVSLLTRHRFPDPKSLAADLHLNGFKAI 62 (310)
Q Consensus 7 v~~~~~~~~~~~iP~d~~~~~d~~w----~~--~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~ 62 (310)
+.++++.+.++++-+..+.. ...- .. .-.++++-..=.+.+++++.|++.|+++.
T Consensus 12 L~~i~~~i~~~~~nI~~i~~-~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 12 LAKLLAVIAEAGANIIEVSH-DRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred HHHHHHHHHHcCCCEEEEEE-EeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 55677788899998877542 2211 11 23345543222234699999999999863
No 131
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=31.73 E-value=58 Score=27.15 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.4
Q ss_pred CCChHHHHHHHHhCCCeEEEEe
Q 021612 44 FPDPKSLAADLHLNGFKAIWML 65 (310)
Q Consensus 44 Fpdp~~mi~~L~~~G~k~~~~v 65 (310)
||+..++++.|+++|+++++..
T Consensus 44 ~pgv~e~L~~Lk~~G~~l~I~T 65 (166)
T TIGR01664 44 YPEIPAKLQELDDEGYKIVIFT 65 (166)
T ss_pred cCCHHHHHHHHHHCCCEEEEEe
Confidence 6889999999999999987654
No 132
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=31.07 E-value=1.8e+02 Score=25.47 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCCh--HHHHHHHHhCCCeEEEEeCCcccc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDP--KSLAADLHLNGFKAIWMLDPGIKH 71 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp--~~mi~~L~~~G~k~~~~v~P~i~~ 71 (310)
.+.+.+.++++|+. +|.++ ...+|.. ++ +..|.+ +++.++|-+.|+-+|+--+|++..
T Consensus 161 ~~~~~~~i~~lr~~---~D~vI-v~~H~G~----e~--~~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q 220 (239)
T cd07381 161 LERIAADIAEAKKK---ADIVI-VSLHWGV----EY--SYYPTPEQRELARALIDAGADLVIGHHPHVLQ 220 (239)
T ss_pred HHHHHHHHHHHhhc---CCEEE-EEecCcc----cC--CCCCCHHHHHHHHHHHHCCCCEEEcCCCCcCC
Confidence 46788888888886 88865 4667743 22 245666 467778888999999988998764
No 133
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=30.98 E-value=59 Score=26.20 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.0
Q ss_pred CCCChHHHHHHHHhCCCeEEEEe
Q 021612 43 RFPDPKSLAADLHLNGFKAIWML 65 (310)
Q Consensus 43 ~Fpdp~~mi~~L~~~G~k~~~~v 65 (310)
-||+..++++.|+++|+++++..
T Consensus 28 ~~~g~~~~l~~Lk~~g~~~~I~S 50 (147)
T TIGR01656 28 LRPGAVPALLTLRAAGYTVVVVT 50 (147)
T ss_pred EcCChHHHHHHHHHCCCEEEEEe
Confidence 48899999999999999987653
No 134
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=30.95 E-value=1e+02 Score=27.20 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=44.5
Q ss_pred HHHHhHHh-CCcceEEEee-ec--ccCC------CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccC
Q 021612 10 FAGHFVRK-VYPVMLYGWI-LT--TWMD------FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHE 72 (310)
Q Consensus 10 ~~~~~~~~-~iP~d~~~~~-d~--~w~~------~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~ 72 (310)
+++.+|+. .+|+|+ .+- .. .|-+ -.-.|+-.|.-+++...++.+++.|.|..+.++|.-..+
T Consensus 52 ~v~~l~~~t~~p~Dv-HLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~ 123 (220)
T COG0036 52 VVKALRKITDLPLDV-HLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLE 123 (220)
T ss_pred HHHHHhhcCCCceEE-EEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHH
Confidence 45566665 588887 221 21 1211 134677778999999999999999999999999987664
No 135
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=30.76 E-value=2.9e+02 Score=27.26 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccccccc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSK 83 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~~~ 83 (310)
.+.+.++|....+-||.--++ ....=.....+-++....|+.+++.+.++.-|+|+-+.++= .++ .+
T Consensus 182 ~qR~kDYAR~laSiGINg~v~--NNVNvk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsinf----aSP--~~----- 248 (684)
T COG3661 182 DQRMKDYARALASIGINGTVL--NNVNVKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSINF----ASP--ME----- 248 (684)
T ss_pred hHHHHHHHHHHhhcCcceEEe--cccccchhhhheechHhHHHHHHHHHHhhhccceEEEEecc----CCc--cc-----
Confidence 356677777777777766543 22111112233455555667778888888888887765431 111 11
Q ss_pred cceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhC--CccEEEe
Q 021612 84 IDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYN--GVDGIWN 136 (310)
Q Consensus 84 ~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~--Gvdg~w~ 136 (310)
.| | ----|-..+++++||++....++++ .+-||-.
T Consensus 249 lG-------g-----------L~TADPLDe~VrawWkeka~~IY~yIPDFGGFLV 285 (684)
T COG3661 249 LG-------G-----------LKTADPLDEAVRAWWKEKADEIYKYIPDFGGFLV 285 (684)
T ss_pred cC-------C-----------cCcCCcccHHHHHHHHHHHHHHHHhcccccceEE
Confidence 00 0 0012667789999999999888863 3445543
No 136
>PRK08392 hypothetical protein; Provisional
Probab=30.33 E-value=1.7e+02 Score=25.28 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=10.8
Q ss_pred HHHHHHHhCCCeEEEEeCCc
Q 021612 49 SLAADLHLNGFKAIWMLDPG 68 (310)
Q Consensus 49 ~mi~~L~~~G~k~~~~v~P~ 68 (310)
.+++..+++|.++++.-|.+
T Consensus 165 ~~l~~~~~~G~~~~igSDAH 184 (215)
T PRK08392 165 EFIRECIKRGIKLTFASDAH 184 (215)
T ss_pred HHHHHHHHcCCEEEEeCCCC
Confidence 45555566666555544433
No 137
>PLN02327 CTP synthase
Probab=30.03 E-value=57 Score=32.90 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCeEEEE-eCCccccCCC
Q 021612 49 SLAADLHLNGFKAIWM-LDPGIKHEDG 74 (310)
Q Consensus 49 ~mi~~L~~~G~k~~~~-v~P~i~~~~~ 74 (310)
.+-..|+++|+||..+ +||+++.|.+
T Consensus 22 Sig~ll~~~g~~V~~~K~DPYlNvD~G 48 (557)
T PLN02327 22 SIGVLLKACGLRVTSIKIDPYLNTDAG 48 (557)
T ss_pred HHHHHHHHCCCceeeeecccccccCCC
Confidence 3446799999999766 9999998764
No 138
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=29.21 E-value=1.7e+02 Score=25.98 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=39.2
Q ss_pred ChHHHHHHHHhCCCeEEEEeCCccccCCCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHh
Q 021612 46 DPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKD 125 (310)
Q Consensus 46 dp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~ 125 (310)
+...+++.+|++|+|+++.|.-. . ... + .. =..+|+.|+=+.+.+.+
T Consensus 47 ~~~~~~~~~~~~~~kvl~sigg~----~----~~~------~-----------------~~--~~~~~~~r~~fi~~lv~ 93 (253)
T cd06545 47 ELNSVVNAAHAHNVKILISLAGG----S----PPE------F-----------------TA--ALNDPAKRKALVDKIIN 93 (253)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCC----C----CCc------c-----------------hh--hhcCHHHHHHHHHHHHH
Confidence 35688999999999998866311 0 000 0 00 12467777655555544
Q ss_pred HH-hCCccEEEecCCC
Q 021612 126 FI-YNGVDGIWNDMNE 140 (310)
Q Consensus 126 ~~-~~Gvdg~w~D~~e 140 (310)
++ +.|+||+=+|.-.
T Consensus 94 ~~~~~~~DGIdiDwE~ 109 (253)
T cd06545 94 YVVSYNLDGIDVDLEG 109 (253)
T ss_pred HHHHhCCCceeEEeec
Confidence 44 7999999999744
No 139
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=28.86 E-value=2.8e+02 Score=25.60 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCC------------------CCC---Ch---HHHHHHHHhCCC
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRH------------------RFP---DP---KSLAADLHLNGF 59 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~------------------~Fp---dp---~~mi~~L~~~G~ 59 (310)
.+.+.++++++++.+ -|+|+++..+|....++.++.. +|| |+ +.+.+.+++.|+
T Consensus 36 ~~a~~~~~~~i~~~~--Pd~IVViSpHw~~~~~~~~~~~p~~~G~~~~~~~p~~~~~~~~~~gd~eLA~~i~~~~~~~Gi 113 (294)
T cd07372 36 RWAYERARESIEALK--PDVLLVHSPHWITSVGHHFLGVPELSGRSVDPIFPNLFRYDFSMNVDVELAEACCEEGRKAGL 113 (294)
T ss_pred HHHHHHHHHHHHHcC--CCEEEEECCCcccccCeeeecCCcccccccccccccceeeccCCCCCHHHHHHHHHHHHHCCC
Confidence 356677788887776 5666667889986444444321 332 22 356667788888
Q ss_pred eEEEEeCCccccC
Q 021612 60 KAIWMLDPGIKHE 72 (310)
Q Consensus 60 k~~~~v~P~i~~~ 72 (310)
.+.....+....|
T Consensus 114 ~~~~~~~~~~~LD 126 (294)
T cd07372 114 VTKMMRNPRFRVD 126 (294)
T ss_pred CeeeccCCCCCCC
Confidence 8765444433333
No 140
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=28.53 E-value=91 Score=31.31 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCeEEEE-eCCccccCCC
Q 021612 49 SLAADLHLNGFKAIWM-LDPGIKHEDG 74 (310)
Q Consensus 49 ~mi~~L~~~G~k~~~~-v~P~i~~~~~ 74 (310)
.+-..|+++|+||..+ +||+++.|.+
T Consensus 22 s~g~ll~~~g~~v~~~K~DpYlN~d~G 48 (525)
T TIGR00337 22 SIGRLLKARGLKVTIIKIDPYINIDPG 48 (525)
T ss_pred HHHHHHHhCCCceEEEeecccccCCCC
Confidence 3456799999999766 9999998764
No 141
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=28.39 E-value=95 Score=30.87 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCeEEEE-eCCccccCCC
Q 021612 49 SLAADLHLNGFKAIWM-LDPGIKHEDG 74 (310)
Q Consensus 49 ~mi~~L~~~G~k~~~~-v~P~i~~~~~ 74 (310)
.+-.-|+++|+||... +||+++.|.+
T Consensus 22 Slg~lLk~rG~~Vt~~KlDPYlNvDpG 48 (533)
T COG0504 22 SLGRLLKARGLKVTIQKLDPYLNVDPG 48 (533)
T ss_pred HHHHHHHHCCceEEEEecccceecCCC
Confidence 4556799999999765 9999998754
No 142
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=28.11 E-value=74 Score=29.20 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCC------Ccc--e-----------eeCCCCCCChHHHHHHHHhCCCeEEE
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMD------FVV--S-----------LLTRHRFPDPKSLAADLHLNGFKAIW 63 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~------~~~--f-----------t~d~~~Fpdp~~mi~~L~~~G~k~~~ 63 (310)
..+|+..+++..++.||-+=.+++ ...+.. +.. | .+|+..|...+++|+.|.++|+.+.+
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~-l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~l 106 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNV-LPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAAL 106 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES--SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEe-CCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Confidence 457888899999999999877654 333321 111 2 13444555568999999999998765
Q ss_pred E
Q 021612 64 M 64 (310)
Q Consensus 64 ~ 64 (310)
+
T Consensus 107 v 107 (289)
T PF13204_consen 107 V 107 (289)
T ss_dssp E
T ss_pred E
Confidence 4
No 143
>TIGR03356 BGL beta-galactosidase.
Probab=27.91 E-value=2.4e+02 Score=27.49 Aligned_cols=106 Identities=10% Similarity=0.082 Sum_probs=63.3
Q ss_pred HHHHHHHHHhHHhCCcceEEEeeecccCC---CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccccc
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWILTTWMD---FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSG 81 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d~~w~~---~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~ 81 (310)
+.+.+-++.+++.|+..=-+ ...|.. .++=.+|++.+--.+++|+.|+++|++.++.++.+-.. ..
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~---si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P-----~~--- 122 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRF---SIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLP-----QA--- 122 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEc---ccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCcc-----HH---
Confidence 34566777788888776442 345654 11123444333345799999999999998877654111 10
Q ss_pred cccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh---CCccEEEecCCCCccc
Q 021612 82 SKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY---NGVDGIWNDMNEPAVF 144 (310)
Q Consensus 82 ~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~---~Gvdg~w~D~~e~~~~ 144 (310)
+. +.+ -|.+++..+.+.+..+.+++ ..|+ +|.=.|||..+
T Consensus 123 -----l~-~~g----------------Gw~~~~~~~~f~~ya~~~~~~~~d~v~-~w~t~NEp~~~ 165 (427)
T TIGR03356 123 -----LE-DRG----------------GWLNRDTAEWFAEYAAVVAERLGDRVK-HWITLNEPWCS 165 (427)
T ss_pred -----HH-hcC----------------CCCChHHHHHHHHHHHHHHHHhCCcCC-EEEEecCccee
Confidence 00 001 24677777776666655552 3466 56889999754
No 144
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=27.84 E-value=52 Score=28.95 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=24.2
Q ss_pred ceeeCCCCCCChHHHHHHHHhCCCeEEEEe
Q 021612 36 VSLLTRHRFPDPKSLAADLHLNGFKAIWML 65 (310)
Q Consensus 36 ~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v 65 (310)
.-.....-||+..++++.|+++|+++.+..
T Consensus 89 ~~~~~~~lypgv~e~L~~Lk~~G~~l~I~S 118 (220)
T TIGR01691 89 SGELTSHLYPDVPPALEAWLQLGLRLAVYS 118 (220)
T ss_pred cCCcccCcCcCHHHHHHHHHHCCCEEEEEe
Confidence 335556789999999999999999987643
No 145
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=27.45 E-value=2.9e+02 Score=25.80 Aligned_cols=99 Identities=16% Similarity=0.200 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccCCCccccccccc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSK 83 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~~~ 83 (310)
.+.+.++|..+.+-||---+| ..-.-. ..-..++.-++.+++.+.++.-|+|+-+.++=. .-.+
T Consensus 56 ~~R~~~YARllASiGINgvvl--NNVNa~---~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFa-----------sP~~ 119 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVL--NNVNAN---PKLLTPEYLDKVARLADVFRPYGIKVYLSVNFA-----------SPIE 119 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE---S-SS-----CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TT-----------HHHH
T ss_pred hhHHHHHHHHHhhcCCceEEe--cccccC---hhhcCHHHHHHHHHHHHHHhhcCCEEEEEeecc-----------CCcc
Confidence 457788888888888876542 221111 122334455566788888999999988866411 1111
Q ss_pred cceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhC--CccEEEe
Q 021612 84 IDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYN--GVDGIWN 136 (310)
Q Consensus 84 ~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~--Gvdg~w~ 136 (310)
.| |- .--|=.+|++++||++..+.+++. .+-||-.
T Consensus 120 lg-------gL-----------~TaDPld~~V~~WW~~k~~eIY~~IPDfgGflV 156 (328)
T PF07488_consen 120 LG-------GL-----------PTADPLDPEVRQWWKDKADEIYSAIPDFGGFLV 156 (328)
T ss_dssp TT-------S------------S---TTSHHHHHHHHHHHHHHHHH-TT--EEEE
T ss_pred cC-------Cc-----------CcCCCCCHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 11 10 112678899999999999999863 3556544
No 146
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=27.34 E-value=1.6e+02 Score=27.36 Aligned_cols=93 Identities=15% Similarity=0.169 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCC-----hHHHHHHHHhCCCeEEEEeCCccccCCCcccc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPD-----PKSLAADLHLNGFKAIWMLDPGIKHEDGYFVY 78 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpd-----p~~mi~~L~~~G~k~~~~v~P~i~~~~~~~~y 78 (310)
-++=+++++-+.+.++-.=.+-=-|+.+.. -.|. +.||. .+++++.-++.|++++.-++|+....
T Consensus 14 ~e~R~~l~~f~~~~kmN~YiYAPKdDpyhr---~~Wr-e~Yp~~el~~l~~L~~~a~~~~V~Fv~aisPg~~~~------ 83 (306)
T PF07555_consen 14 HEDRLDLIRFLGRYKMNTYIYAPKDDPYHR---SKWR-EPYPEEELAELKELADAAKANGVDFVYAISPGLDIC------ 83 (306)
T ss_dssp HHHHHHHHHHHHHTT--EEEE--TT-TTTT---TTTT-S---HHHHHHHHHHHHHHHHTT-EEEEEEBGTTT--------
T ss_pred HHHHHHHHHHHHHcCCceEEECCCCChHHH---hhhc-ccCCHHHHHHHHHHHHHHHHcCCEEEEEECcccccc------
Confidence 456677777888888765332100222221 2453 56665 57899999999999999999985442
Q ss_pred ccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHhCCccEEEec
Q 021612 79 DSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWND 137 (310)
Q Consensus 79 ~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D 137 (310)
|+.++..+=...+++++.+.||+.|=+-
T Consensus 84 -------------------------------~s~~~d~~~L~~K~~ql~~lGvr~Fail 111 (306)
T PF07555_consen 84 -------------------------------YSSEEDFEALKAKFDQLYDLGVRSFAIL 111 (306)
T ss_dssp -------------------------------TSHHHHHHHHHHHHHHHHCTT--EEEEE
T ss_pred -------------------------------cCcHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2233334556678888889999976554
No 147
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=27.23 E-value=1.1e+02 Score=26.66 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=44.8
Q ss_pred eeeCCCCCCCchHHHHHHHHHHHhhhcCCCccccCCCCCCCCCChhHHHHHHHhhhhccccccCCCCCCCCCCCcccChh
Q 021612 213 ATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEE 292 (310)
Q Consensus 213 ~~w~GD~~ssW~~L~~~i~~~l~~~l~G~p~~g~DIgGf~g~~~~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~ 292 (310)
+-|..|......+|-..+..-.++-...-+-.+.|+. ++||+ ++|+.-.++. .-+.++++
T Consensus 11 gdw~~d~p~~l~~L~~~l~~~t~~~~~~~~~~~v~~~------~~~L~--------~yP~ly~~g~------~~~~~s~~ 70 (207)
T PF13709_consen 11 GDWNVDSPAGLRNLSRFLNQRTSLEVGPEEPQAVDLD------DDELF--------FYPFLYWPGH------GDFPLSDE 70 (207)
T ss_pred CCccccchhHHHHHHHHHHHHhCCCccCCCCcccCCC------chhHH--------hCCEEEEeCC------CCCCCCHH
Confidence 5666665555666666666655554443222333333 67886 7898877753 34478888
Q ss_pred hHHHHHHHHHH
Q 021612 293 VLFCSSIVIIA 303 (310)
Q Consensus 293 ~~~~~r~~i~~ 303 (310)
..+..|++|++
T Consensus 71 e~~~Lr~Yl~~ 81 (207)
T PF13709_consen 71 EIANLRRYLEN 81 (207)
T ss_pred HHHHHHHHHHc
Confidence 88888888864
No 148
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.17 E-value=2.3e+02 Score=22.00 Aligned_cols=45 Identities=9% Similarity=-0.091 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEEEeC
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLD 66 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~ 66 (310)
....++++..+|+.|+.+.. + + + ..+++-++.....|+++++++.
T Consensus 41 ~~~a~~la~~LR~~gi~v~~----d--------~-----~-~sl~kqlk~A~k~g~~~~iiiG 85 (121)
T cd00858 41 VEIAKEISEELRELGFSVKY----D--------D-----S-GSIGRRYARQDEIGTPFCVTVD 85 (121)
T ss_pred HHHHHHHHHHHHHCCCEEEE----e--------C-----C-CCHHHHHHHhHhcCCCEEEEEC
Confidence 45677888888888877754 2 1 2 3677777888888888887765
No 149
>PHA02119 hypothetical protein
Probab=26.65 E-value=62 Score=23.04 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=31.1
Q ss_pred HhHHhCCcceEEEeeecccCCCcc--eeeCCCCCCC--hHHHHHHHHhCCCe
Q 021612 13 HFVRKVYPVMLYGWILTTWMDFVV--SLLTRHRFPD--PKSLAADLHLNGFK 60 (310)
Q Consensus 13 ~~~~~~iP~d~~~~~d~~w~~~~~--ft~d~~~Fpd--p~~mi~~L~~~G~k 60 (310)
++.++=-|+.-++- | ..-..+. .+|+-.+||. |+++++.|++.|+.
T Consensus 20 elkrklapvgkfva-d-emi~~r~f~isf~~~kfp~i~~~divdylr~lgy~ 69 (87)
T PHA02119 20 ELKRKLAPVGKFVA-D-EMIRQRSFKISFDVAKFPAIMPKDIVDYLRSLGYD 69 (87)
T ss_pred HHHHhccchhhHHH-H-HHHHhheeEEEeccccCCccccHHHHHHHHHccch
Confidence 34455568877542 2 1111333 4788899998 69999999999985
No 150
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=26.51 E-value=2e+02 Score=27.05 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeec-ccCC----Cccee----eCCC-CC--CChHHHHHHHHhCCCeEEEEeC-Ccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILT-TWMD----FVVSL----LTRH-RF--PDPKSLAADLHLNGFKAIWMLD-PGI 69 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~-~w~~----~~~ft----~d~~-~F--pdp~~mi~~L~~~G~k~~~~v~-P~i 69 (310)
..++|+++++.+...++-.=.+.+.|+ .|.= +-..+ +.+. .| .+.+++++..+++|+.+|+-++ |+=
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH 95 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTPGH 95 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCchh
Confidence 568999999999999999877766542 3321 11111 1111 12 1357899999999999998886 431
Q ss_pred ccC--CCccccccccccceeEecCCCCceeEeecCCCccCCCCCCHHHHHHHHHHHHhHHh
Q 021612 70 KHE--DGYFVYDSGSKIDVWIQKADGTPFIGEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 128 (310)
Q Consensus 70 ~~~--~~~~~y~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dft~p~a~~ww~~~~~~~~~ 128 (310)
... ..|+ +. .+...+. .....-......+|.++|++.+..++.++.+.+
T Consensus 96 ~~a~~~~~p---~l-----~~~~~~~--~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~ 146 (348)
T cd06562 96 TGSWGQGYP---EL-----LTGCYAV--WRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSE 146 (348)
T ss_pred hHHHHHhCh---hh-----hCCCCcc--ccccccCCCCccccCCChhHHHHHHHHHHHHHH
Confidence 110 1111 10 0000000 000000112345899999999998888887764
No 151
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=26.45 E-value=1.3e+02 Score=26.89 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=13.5
Q ss_pred HHHHhHHhCCccEEEecC
Q 021612 121 SLVKDFIYNGVDGIWNDM 138 (310)
Q Consensus 121 ~~~~~~~~~Gvdg~w~D~ 138 (310)
+.++.+.+.||||+-.|.
T Consensus 239 ~~~~~l~~~GvdgiiTD~ 256 (265)
T cd08564 239 EDYKVYLELGVDCICPND 256 (265)
T ss_pred HHHHHHHHcCCCEEEcCC
Confidence 355667788999998884
No 152
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=26.44 E-value=78 Score=27.63 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=38.5
Q ss_pred hhHHHHHHHhhhhccccccCCCCCCCCCCCcccChhhHHHHHHHHHHHh
Q 021612 257 PRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 305 (310)
Q Consensus 257 ~EL~~RW~Q~g~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~i~~~~ 305 (310)
-|+|.+|+-.|.++-++-..-..-..+-.||.++.--.+++.++++.|-
T Consensus 163 l~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p 211 (237)
T COG3510 163 LKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREFP 211 (237)
T ss_pred HHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHHHhCC
Confidence 4899999999999988754433333468899998888888888888775
No 153
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=26.37 E-value=62 Score=31.13 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.7
Q ss_pred eeCCCCCCChHHHHHHHHhCCCeEEEEe
Q 021612 38 LLTRHRFPDPKSLAADLHLNGFKAIWML 65 (310)
Q Consensus 38 t~d~~~Fpdp~~mi~~L~~~G~k~~~~v 65 (310)
.|++++| ||++.++.+++.|+|.++.+
T Consensus 75 ~F~p~~f-D~~~Wa~~~k~AGakY~vlT 101 (384)
T smart00812 75 QFTAEKF-DPEEWADLFKKAGAKYVVLT 101 (384)
T ss_pred cCCchhC-CHHHHHHHHHHcCCCeEEee
Confidence 4677776 89999999999999987754
No 154
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=26.26 E-value=1.9e+02 Score=25.70 Aligned_cols=58 Identities=9% Similarity=-0.031 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIK 70 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~ 70 (310)
.+.+.++++.+.++|+++.+ .-..+.. --.+.+|.+ .+++..++.|+++++.-+.+..
T Consensus 184 ~~~~~~il~~~~~~g~~lEi---Nt~g~r~-----~~~~~yP~~-~il~~~~~~g~~itlgSDAH~~ 241 (253)
T TIGR01856 184 YELLQRILKLVASQGKALEF---NTSGLRK-----PLEEAYPSK-ELLNLAKELGIPLVLGSDAHGP 241 (253)
T ss_pred HHHHHHHHHHHHHcCCEEEE---EcHhhcC-----CCCCCCCCH-HHHHHHHHcCCCEEecCCCCCH
Confidence 34578888888999988864 3322211 011355554 5889999999999887776543
No 155
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=25.95 E-value=88 Score=24.35 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.3
Q ss_pred CCCCCChHHHHHHHHhCCCeEEEEe
Q 021612 41 RHRFPDPKSLAADLHLNGFKAIWML 65 (310)
Q Consensus 41 ~~~Fpdp~~mi~~L~~~G~k~~~~v 65 (310)
...||+..+.++.|+++|+++++..
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~S 48 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVT 48 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEE
Confidence 3578999999999999999987653
No 156
>PRK14057 epimerase; Provisional
Probab=25.94 E-value=3.1e+02 Score=24.78 Aligned_cols=34 Identities=12% Similarity=-0.169 Sum_probs=21.2
Q ss_pred eeCCCCCCChHHHHHHHHhCCC---------eEEEEeCCcccc
Q 021612 38 LLTRHRFPDPKSLAADLHLNGF---------KAIWMLDPGIKH 71 (310)
Q Consensus 38 t~d~~~Fpdp~~mi~~L~~~G~---------k~~~~v~P~i~~ 71 (310)
++--|.=+++..+++.+++.|. |..+.++|.-..
T Consensus 103 t~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~ 145 (254)
T PRK14057 103 TLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPL 145 (254)
T ss_pred EEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCH
Confidence 3433433567777777777776 466777776544
No 157
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=25.52 E-value=1.7e+02 Score=27.54 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEE
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAI 62 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~ 62 (310)
-+.|++-++.+++.++++.+. ++.++....+.++|++.+++.|++.+
T Consensus 143 f~~v~~~i~~l~~~~~~~~i~------------~~v~~~n~~~l~~i~~~~~~~g~~~~ 189 (370)
T PRK13758 143 FSKVERAAELFKKYKVEFNIL------------CVVTSNTARHVNKIYKYFKEKDFKFL 189 (370)
T ss_pred HHHHHHHHHHHHHhCCCceEE------------EEeccccccCHHHHHHHHHHcCCCeE
Confidence 356666677777777777652 34555666677888888888888754
No 158
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=25.46 E-value=4e+02 Score=23.62 Aligned_cols=36 Identities=14% Similarity=-0.138 Sum_probs=27.8
Q ss_pred eeeCCCCCCChHHHHHHHHhCCC--eEEEEeCCccccC
Q 021612 37 SLLTRHRFPDPKSLAADLHLNGF--KAIWMLDPGIKHE 72 (310)
Q Consensus 37 ft~d~~~Fpdp~~mi~~L~~~G~--k~~~~v~P~i~~~ 72 (310)
.++--|.=+++.++++.+|+.|. |..+.++|....+
T Consensus 95 It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~ 132 (228)
T PRK08091 95 VTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPIS 132 (228)
T ss_pred EEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHH
Confidence 45555555778899999999998 9988888886554
No 159
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=25.44 E-value=33 Score=32.45 Aligned_cols=37 Identities=11% Similarity=0.069 Sum_probs=31.4
Q ss_pred CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCcccc
Q 021612 34 FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKH 71 (310)
Q Consensus 34 ~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~ 71 (310)
++.|+.++..+.-.+++++.++++|+++++| .|-|..
T Consensus 241 l~~f~~s~~q~~F~e~~L~~ake~~I~~vl~-~P~V~~ 277 (345)
T PF07611_consen 241 LSSFTFSETQFFFLEKFLKLAKENGIPVVLW-WPKVSP 277 (345)
T ss_pred hcCCCCChhHHHHHHHHHHHHHHcCCcEEEE-EeccCH
Confidence 5789999999999999999999999999875 455443
No 160
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=24.48 E-value=2.5e+02 Score=24.77 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=39.8
Q ss_pred HHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCCh--HHHHHHHHhCCCeEEEEeCCcccc
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDP--KSLAADLHLNGFKAIWMLDPGIKH 71 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp--~~mi~~L~~~G~k~~~~v~P~i~~ 71 (310)
+++++.+++.+ =++|.++ .-.+|.. + -+.+|.+ +++...|-+.|.-+|+--+|++-.
T Consensus 171 ~~i~~~i~~~r---~~~D~vI-v~~HwG~----e--~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q 229 (250)
T PF09587_consen 171 ERIKEDIREAR---KKADVVI-VSLHWGI----E--YENYPTPEQRELARALIDAGADIIIGHHPHVIQ 229 (250)
T ss_pred HHHHHHHHHHh---cCCCEEE-EEeccCC----C--CCCCCCHHHHHHHHHHHHcCCCEEEeCCCCccc
Confidence 44555555544 4678754 4667742 2 2566776 689999999999999999999865
No 161
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=24.38 E-value=2.7e+02 Score=24.42 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCCh--HHHHHHHHhCCCeEEEEeCCcccc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDP--KSLAADLHLNGFKAIWMLDPGIKH 71 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp--~~mi~~L~~~G~k~~~~v~P~i~~ 71 (310)
.+++.+.++++|+ .+|.+++ ..+|.. +. ...|.+ +++.++|-+.|+-+|+--+|++..
T Consensus 159 ~~~i~~~i~~lr~---~~D~vIv-~~H~G~----e~--~~~p~~~~~~~A~~l~~~G~DvIiG~H~H~~~ 218 (239)
T smart00854 159 REKILADIARARK---KADVVIV-SLHWGV----EY--QYEPTDEQRELAHALIDAGADVVIGHHPHVLQ 218 (239)
T ss_pred HHHHHHHHHHHhc---cCCEEEE-EecCcc----cc--CCCCCHHHHHHHHHHHHcCCCEEEcCCCCcCC
Confidence 4677888888876 3788653 566753 11 245665 568888888999999988998764
No 162
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=24.12 E-value=2.1e+02 Score=24.98 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=34.3
Q ss_pred HHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCc
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPG 68 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~ 68 (310)
+-+.++++.+....++-..++++- |+ ++...-+...+.+++|+.+|.|++ |++|-
T Consensus 134 ~aL~~~~~~~~~~~~~~t~vvIiS-------Dg-~~~~~~~~~~~~l~~l~~r~~rvi-wLnP~ 188 (222)
T PF05762_consen 134 QALREFLRQYARPDLRRTTVVIIS-------DG-WDTNDPEPLAEELRRLRRRGRRVI-WLNPL 188 (222)
T ss_pred HHHHHHHHHhhcccccCcEEEEEe-------cc-cccCChHHHHHHHHHHHHhCCEEE-EECCc
Confidence 445566666666666544444432 33 343333445788899999999974 67776
No 163
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.10 E-value=1.1e+02 Score=23.12 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=22.3
Q ss_pred ceeeCCCCCCChHHHHHHHHhCCCeEEEEe
Q 021612 36 VSLLTRHRFPDPKSLAADLHLNGFKAIWML 65 (310)
Q Consensus 36 ~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v 65 (310)
++--..+-+|...+.++.|+++|.++++..
T Consensus 8 vl~~g~~~ipga~e~l~~L~~~g~~~~~lT 37 (101)
T PF13344_consen 8 VLYNGNEPIPGAVEALDALRERGKPVVFLT 37 (101)
T ss_dssp TSEETTEE-TTHHHHHHHHHHTTSEEEEEE
T ss_pred EeEeCCCcCcCHHHHHHHHHHcCCCEEEEe
Confidence 333355678999999999999999887643
No 164
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=23.27 E-value=1e+02 Score=26.75 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=29.0
Q ss_pred eeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccccC
Q 021612 37 SLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKHE 72 (310)
Q Consensus 37 ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~~ 72 (310)
.++-.+..+++.++++.+++.|+|..+.++|.-..+
T Consensus 84 i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~ 119 (201)
T PF00834_consen 84 ITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVE 119 (201)
T ss_dssp EEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GG
T ss_pred EEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCch
Confidence 466666778999999999999999999999986554
No 165
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=23.09 E-value=74 Score=29.97 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=18.2
Q ss_pred eeCCCCCCChHHHHHHHHhCCCeEEEEe
Q 021612 38 LLTRHRFPDPKSLAADLHLNGFKAIWML 65 (310)
Q Consensus 38 t~d~~~Fpdp~~mi~~L~~~G~k~~~~v 65 (310)
+|+++.| ||++.++..++.|.|.++.+
T Consensus 85 ~F~p~~f-D~dqW~~~ak~aGakY~VlT 111 (346)
T PF01120_consen 85 QFNPTKF-DADQWAKLAKDAGAKYVVLT 111 (346)
T ss_dssp G---TT---HHHHHHHHHHTT-SEEEEE
T ss_pred hCCcccC-CHHHHHHHHHHcCCCEEEee
Confidence 5667766 79999999999999987764
No 166
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=22.72 E-value=3.1e+02 Score=19.98 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCccc
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIK 70 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~ 70 (310)
..+.+.++++.+++.. |...+.+ .|-....|+.++.+++|.++|++-++.+..++.
T Consensus 15 ~~~~~~~~~~~l~~~~-~~~~v~~-----------a~~~~~~P~i~~~l~~l~~~g~~~vvvvPl~~~ 70 (101)
T cd03409 15 YKKDIEAQAHNLAESL-PDFPYYV-----------GFQSGLGPDTEEAIRELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred HHHHHHHHHHHHHHHC-CCCCEEE-----------EEECCCCCCHHHHHHHHHHcCCCeEEEEeCccc
Confidence 3467777888887653 3211111 111114899999999999999987665544433
No 167
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=22.59 E-value=1.7e+02 Score=27.10 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=11.0
Q ss_pred CCChHHHHHHHHhCCCeEEEE
Q 021612 44 FPDPKSLAADLHLNGFKAIWM 64 (310)
Q Consensus 44 Fpdp~~mi~~L~~~G~k~~~~ 64 (310)
|...-+-++.|++.|+++.+.
T Consensus 148 f~~~l~~I~~l~~~G~~v~v~ 168 (318)
T TIGR03470 148 FDRAVEAIREAKARGFRVTTN 168 (318)
T ss_pred HHHHHHHHHHHHHCCCcEEEE
Confidence 333445555666666665443
No 168
>PLN02635 disproportionating enzyme
Probab=22.45 E-value=1.5e+02 Score=29.86 Aligned_cols=74 Identities=15% Similarity=0.292 Sum_probs=35.2
Q ss_pred HHHHHHhCCCeEEEEeCCccccCCCccccccccccceeEecCCCCce------------eEeecCCCccCCCCCCHHHHH
Q 021612 50 LAADLHLNGFKAIWMLDPGIKHEDGYFVYDSGSKIDVWIQKADGTPF------------IGEVWPGPCVFPDYTQSKVRS 117 (310)
Q Consensus 50 mi~~L~~~G~k~~~~v~P~i~~~~~~~~y~~~~~~~~~v~~~~g~~~------------~~~~w~G~~~~~Dft~p~a~~ 117 (310)
+.+..+++|++++-=+-=+|..++. +.-....+|..+.+|.|. .|..|.-..--++--..+..+
T Consensus 229 l~~yA~~~Gi~L~gDlpi~Va~dSa----DvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ 304 (538)
T PLN02635 229 VRSYANEKGISIIGDMPIYVGGHSA----DVWANRKLFLLNKTGFPLLVSGVPPDAFSETGQLWGSPLYDWKAMAKDGYS 304 (538)
T ss_pred HHHHHHHCCCEEEEEeecccCCCcH----HHhcCHHhhcCCCCCCcceeeeCCCCcCCcccccCCCcCcCHHHHHhcCcH
Confidence 4456778899864433334554431 122334445444433332 123343222111212233467
Q ss_pred HHHHHHHhHH
Q 021612 118 WWGSLVKDFI 127 (310)
Q Consensus 118 ww~~~~~~~~ 127 (310)
||.+.++...
T Consensus 305 ww~~Rlr~~~ 314 (538)
T PLN02635 305 WWAGRMRRAL 314 (538)
T ss_pred HHHHHHHHHH
Confidence 9999997655
No 169
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=22.39 E-value=1.5e+02 Score=26.40 Aligned_cols=61 Identities=11% Similarity=0.106 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhHHhCCcceEEEeeecc--------cCC---CcceeeCCCCC------------CChHHHHHHHHhCCC
Q 021612 3 LIREFVRFAGHFVRKVYPVMLYGWILTT--------WMD---FVVSLLTRHRF------------PDPKSLAADLHLNGF 59 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d~~~~~d~~--------w~~---~~~ft~d~~~F------------pdp~~mi~~L~~~G~ 59 (310)
.+++++.+++.+...+=.-+++| +|.| |.. ++.-.+|++.| |.-.++++.|+++|+
T Consensus 59 v~~~a~~y~~~~~~~~dg~~A~V-~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~ 137 (229)
T TIGR01675 59 VVDEAYFYAKSLALSGDGMDAWI-FDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGI 137 (229)
T ss_pred HHHHHHHHHHHhhccCCCCcEEE-EccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCC
Confidence 35677778887766654455544 3433 111 22212333322 223578999999999
Q ss_pred eEEEE
Q 021612 60 KAIWM 64 (310)
Q Consensus 60 k~~~~ 64 (310)
++++.
T Consensus 138 ~Vf~l 142 (229)
T TIGR01675 138 KIFLL 142 (229)
T ss_pred EEEEE
Confidence 97764
No 170
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=22.31 E-value=2.2e+02 Score=30.59 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccC-------CC--cc-eeeCCCCCCC---hHHHHHHHHhCCCeEEEEeCC
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWM-------DF--VV-SLLTRHRFPD---PKSLAADLHLNGFKAIWMLDP 67 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~-------~~--~~-ft~d~~~Fpd---p~~mi~~L~~~G~k~~~~v~P 67 (310)
.+++.+.++.+++.||-. +|+-.-+. .| .+ .+.|+ .|.. .+.|++.+|++|+++++=+.|
T Consensus 19 f~~~~~~l~YL~~LGis~---IyLsPi~~a~~gs~hGYdv~D~~~idp-~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 19 FDDAAELVPYFADLGVSH---LYLSPILAARPGSTHGYDVVDHTRINP-ELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred HHHHHHHhHHHHHcCCCE---EEECcCccCCCCCCCCCCcCCCCCcCC-CCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 467888899999998754 23322221 12 12 23443 4444 478999999999999887665
No 171
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=22.07 E-value=1.2e+02 Score=19.71 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=17.6
Q ss_pred CCCChHHHHHHHHhCCCeEEE
Q 021612 43 RFPDPKSLAADLHLNGFKAIW 63 (310)
Q Consensus 43 ~Fpdp~~mi~~L~~~G~k~~~ 63 (310)
.++.+++.++.|+.+|+.+++
T Consensus 13 G~k~~~~Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 13 GYKRPSKQIRWLRRNGIPFVV 33 (47)
T ss_pred CCCCHHHHHHHHHHCCCeeEE
Confidence 466788999999999998765
No 172
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=21.99 E-value=97 Score=27.06 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCCCChHHHHHHHHhCCCeEEEEeC
Q 021612 42 HRFPDPKSLAADLHLNGFKAIWMLD 66 (310)
Q Consensus 42 ~~Fpdp~~mi~~L~~~G~k~~~~v~ 66 (310)
+.=|..+++++.||++|.++.++--
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liSG 112 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLISG 112 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEcC
Confidence 3446789999999999999988743
No 173
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=21.95 E-value=1.2e+02 Score=29.86 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=18.9
Q ss_pred HHHHhCCCeEEEE-eCCccccCCC
Q 021612 52 ADLHLNGFKAIWM-LDPGIKHEDG 74 (310)
Q Consensus 52 ~~L~~~G~k~~~~-v~P~i~~~~~ 74 (310)
--|+..|+||+-+ ++|+++.+.+
T Consensus 25 ~lLKs~Gl~VTsIKIDPYlN~DAG 48 (585)
T KOG2387|consen 25 VLLKSCGLRVTSIKIDPYLNIDAG 48 (585)
T ss_pred HHHHhcCceeEEEEeccceeccCc
Confidence 4589999999866 9999998753
No 174
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=21.91 E-value=39 Score=31.55 Aligned_cols=11 Identities=55% Similarity=0.933 Sum_probs=9.7
Q ss_pred CccccCCCCCC
Q 021612 242 PFSGPDIGGFD 252 (310)
Q Consensus 242 p~~g~DIgGf~ 252 (310)
+++|+|||||.
T Consensus 131 iMfGPDICG~~ 141 (406)
T KOG0674|consen 131 IMFGPDICGFG 141 (406)
T ss_pred cccCCcccCCC
Confidence 67999999994
No 175
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=21.70 E-value=4.1e+02 Score=22.25 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHhHH-hCCccEEEecCCCC
Q 021612 111 TQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEP 141 (310)
Q Consensus 111 t~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~e~ 141 (310)
.+++.++=+.+.+.++. +.|+||+=+|.-.|
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~ 115 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEYP 115 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeCC
Confidence 45666665555555555 79999999998543
No 176
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=21.34 E-value=3.7e+02 Score=20.40 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCcccc
Q 021612 4 IREFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGIKH 71 (310)
Q Consensus 4 ~~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i~~ 71 (310)
.+.+.++++.++++.- ..+.+. +-. ..|+.++.+++|.++|.+-+. +-|.+-.
T Consensus 15 ~~~~~~l~~~l~~~~~-~~v~~~------------~lE-~~P~i~~~l~~l~~~G~~~i~-lvPl~L~ 67 (103)
T cd03413 15 NAVYAALEYVLREEDP-ANVFVG------------TVE-GYPGLDDVLAKLKKAGIKKVT-LMPLMLV 67 (103)
T ss_pred hhHHHHHHHHHHhcCC-CcEEEE------------EEc-CCCCHHHHHHHHHHcCCCEEE-EEehhhe
Confidence 3567778888877653 233221 113 689999999999999998654 4565544
No 177
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=21.09 E-value=1.3e+02 Score=24.28 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhH-HhCCcceEEEeeecccCC-CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCCcc
Q 021612 4 IREFVRFAGHFV-RKVYPVMLYGWILTTWMD-FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDPGI 69 (310)
Q Consensus 4 ~~~v~~~~~~~~-~~~iP~d~~~~~d~~w~~-~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P~i 69 (310)
.+++.+.++.++ +.++|...+ ...|+. .+.-.|- =|+.++.+++|.++|+|-++.+.|..
T Consensus 40 ~~~~~~~~~~v~~~l~~~~~~~---~~~fqS~~g~~~Wl---~P~~~~~l~~l~~~G~~~i~v~p~gF 101 (135)
T cd00419 40 PDQCEETARLVAERLGLPFDEY---ELAYQSRFGPGEWL---EPSTDDALEELAKEGVKNVVVVPIGF 101 (135)
T ss_pred HHHHHHHHHHHHHHhCCCCCCE---EEEecCCCCCCCCC---CCCHHHHHHHHHHcCCCeEEEECCcc
Confidence 456666666664 334444332 234444 2222222 16779999999999999888888843
No 178
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=21.00 E-value=1.6e+02 Score=27.63 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=24.2
Q ss_pred HHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeE
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKA 61 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~ 61 (310)
+++++-++.+++.|+++.+. ++..+.+..+.++|++.+++.|++.
T Consensus 132 ~~v~~~i~~l~~~g~~v~v~------------~vv~~~N~~~l~~~~~~~~~lg~~~ 176 (358)
T TIGR02109 132 EQKLAMARAVKAAGLPLTLN------------FVIHRHNIDQIPEIIELAIELGADR 176 (358)
T ss_pred HHHHHHHHHHHhCCCceEEE------------EEeccCCHHHHHHHHHHHHHcCCCE
Confidence 44555555566666665431 2333444555566666666666553
No 179
>PRK11440 putative hydrolase; Provisional
Probab=20.97 E-value=3.4e+02 Score=22.68 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhHHhCCcce
Q 021612 3 LIREFVRFAGHFVRKVYPVM 22 (310)
Q Consensus 3 ~~~~v~~~~~~~~~~~iP~d 22 (310)
++..+.++++.+|+.|+|+=
T Consensus 33 ~i~~i~~l~~~ar~~g~pVi 52 (188)
T PRK11440 33 VVARAARLAAKFRASGSPVV 52 (188)
T ss_pred HHHHHHHHHHHHHHcCCcEE
Confidence 56788999999999999973
No 180
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=20.95 E-value=2.3e+02 Score=26.92 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=19.3
Q ss_pred ChHHHHHHHHhCCCeEEEEeCCcc
Q 021612 46 DPKSLAADLHLNGFKAIWMLDPGI 69 (310)
Q Consensus 46 dp~~mi~~L~~~G~k~~~~v~P~i 69 (310)
+.++.++.+|+.|.|+.+.++...
T Consensus 50 ~l~e~i~~ah~~gkk~~V~~N~~~ 73 (347)
T COG0826 50 DLAEAVELAHSAGKKVYVAVNTLL 73 (347)
T ss_pred HHHHHHHHHHHcCCeEEEEecccc
Confidence 368999999999999877666443
No 181
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=20.87 E-value=74 Score=25.11 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.2
Q ss_pred CCCChHHHHHHHHhCCCeEEEE
Q 021612 43 RFPDPKSLAADLHLNGFKAIWM 64 (310)
Q Consensus 43 ~Fpdp~~mi~~L~~~G~k~~~~ 64 (310)
-||...++++.|+++|+++++.
T Consensus 30 ~~~gv~e~L~~Lk~~g~~l~i~ 51 (128)
T TIGR01681 30 TIKEIRDKLQTLKKNGFLLALA 51 (128)
T ss_pred HHHHHHHHHHHHHHCCeEEEEE
Confidence 4888899999999999998764
No 182
>PHA02103 hypothetical protein
Probab=20.74 E-value=83 Score=24.42 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=28.9
Q ss_pred CCCccCCCCCC-HHHHHHHHHHHHh---HHhCCccEEEecCCCC
Q 021612 102 PGPCVFPDYTQ-SKVRSWWGSLVKD---FIYNGVDGIWNDMNEP 141 (310)
Q Consensus 102 ~G~~~~~Dft~-p~a~~ww~~~~~~---~~~~Gvdg~w~D~~e~ 141 (310)
.|.++.-||++ |+-..++.++-.. ..++||.|.|---.|.
T Consensus 67 ~gkgg~~df~~ipdyyryf~ee~e~ie~we~ygve~l~~p~he~ 110 (135)
T PHA02103 67 RGKGGQADFNHIPDYYRYFGEEAEGVELWEEYGVEGLCWPCHEC 110 (135)
T ss_pred CCCCCccccccChHHHHHhcccchhhhHHHHhCcceeeeccccc
Confidence 46778889998 7777777766543 3369999988765553
No 183
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=20.70 E-value=3.8e+02 Score=24.02 Aligned_cols=64 Identities=16% Similarity=0.059 Sum_probs=45.1
Q ss_pred HHHHHHHHHhHHhCCcceEEEeeecccCC--CcceeeCCCCCCChHHHHHHHHhCCCeEEEE-eCCccc
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWILTTWMD--FVVSLLTRHRFPDPKSLAADLHLNGFKAIWM-LDPGIK 70 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d~~w~~--~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~-v~P~i~ 70 (310)
.|=.++++.+.+.|+|+-+- .-..+.. ...-..-..+|-+.++|.+.|++++++.|+- .|||..
T Consensus 12 ~egr~la~~L~~~g~~v~~S--vat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~ 78 (248)
T PRK08057 12 SEARALARALAAAGVDIVLS--LAGRTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAA 78 (248)
T ss_pred HHHHHHHHHHHhCCCeEEEE--EccCCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHH
Confidence 46678888998899887653 3334433 1122344567889999999999999998776 578854
No 184
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=20.29 E-value=1.6e+02 Score=27.89 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=25.0
Q ss_pred HHHHHHHHHhHHhCCcceEEEeeecccCCCcceeeCCCCCCChHHHHHHHHhCCCeEE
Q 021612 5 REFVRFAGHFVRKVYPVMLYGWILTTWMDFVVSLLTRHRFPDPKSLAADLHLNGFKAI 62 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~~~d~~w~~~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~ 62 (310)
+++++-++.+++.++++.+. ++..+.+..+..++++.+++.|++.+
T Consensus 141 ~~~~~~i~~l~~~g~~v~i~------------~vv~~~N~~~i~~~~~~~~~lgv~~i 186 (378)
T PRK05301 141 AKKLAVARLVKAHGYPLTLN------------AVIHRHNIDQIPRIIELAVELGADRL 186 (378)
T ss_pred HHHHHHHHHHHHCCCceEEE------------EEeecCCHHHHHHHHHHHHHcCCCEE
Confidence 44555556666666665331 23334444555666666666666543
No 185
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=20.24 E-value=2.2e+02 Score=26.82 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=12.5
Q ss_pred HHHHHHHHHhHHhCCcceEEE
Q 021612 5 REFVRFAGHFVRKVYPVMLYG 25 (310)
Q Consensus 5 ~~v~~~~~~~~~~~iP~d~~~ 25 (310)
+-|+++++.++++|.|+|.|.
T Consensus 204 ~~~~nlI~~LkekG~pIDgiG 224 (345)
T COG3693 204 NYVLNLIEELKEKGAPIDGIG 224 (345)
T ss_pred HHHHHHHHHHHHCCCCcccee
Confidence 345566666666666666653
No 186
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=20.22 E-value=1.2e+02 Score=25.37 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.1
Q ss_pred CCCCChHHHHHHHHhCCCeEEEEeC
Q 021612 42 HRFPDPKSLAADLHLNGFKAIWMLD 66 (310)
Q Consensus 42 ~~Fpdp~~mi~~L~~~G~k~~~~v~ 66 (310)
.-||+..++++.|+++|+++.+..+
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn 116 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSN 116 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeC
Confidence 4689999999999999999876543
No 187
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=20.20 E-value=3.3e+02 Score=22.80 Aligned_cols=28 Identities=18% Similarity=0.035 Sum_probs=17.7
Q ss_pred ceeeCCCCCCChHHHHHHHHhCCCeEEE
Q 021612 36 VSLLTRHRFPDPKSLAADLHLNGFKAIW 63 (310)
Q Consensus 36 ~ft~d~~~Fpdp~~mi~~L~~~G~k~~~ 63 (310)
||.|-..+=.|.+.+.+.....|++++.
T Consensus 108 Df~FG~~~~g~~~~L~~~~~~~g~~v~~ 135 (180)
T cd02064 108 DFRFGKGRSGDAELLKELGKKYGFEVTV 135 (180)
T ss_pred CCCCCCCCCCCHHHHHHhhhhcCcEEEE
Confidence 4666666666666666666666766543
No 188
>PRK07328 histidinol-phosphatase; Provisional
Probab=20.11 E-value=3.5e+02 Score=24.24 Aligned_cols=19 Identities=5% Similarity=-0.099 Sum_probs=11.3
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 021612 48 KSLAADLHLNGFKAIWMLD 66 (310)
Q Consensus 48 ~~mi~~L~~~G~k~~~~v~ 66 (310)
+++++.+.++|+-+=++..
T Consensus 180 ~~il~~~~~~g~~lEiNt~ 198 (269)
T PRK07328 180 EEALDVIAAAGLALEVNTA 198 (269)
T ss_pred HHHHHHHHHcCCEEEEEch
Confidence 5666666666665544443
No 189
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=20.08 E-value=92 Score=27.50 Aligned_cols=59 Identities=7% Similarity=-0.066 Sum_probs=38.0
Q ss_pred HHHHHHHHhHHhCCcceEEEeeecccCC----CcceeeCCCCCCChHHHHHHHHhCCCeEEEEeCC
Q 021612 6 EFVRFAGHFVRKVYPVMLYGWILTTWMD----FVVSLLTRHRFPDPKSLAADLHLNGFKAIWMLDP 67 (310)
Q Consensus 6 ~v~~~~~~~~~~~iP~d~~~~~d~~w~~----~~~ft~d~~~Fpdp~~mi~~L~~~G~k~~~~v~P 67 (310)
.+.+..+.+++.|+-+=-|. ..|.. ..+++.+...+...+++++.++++|++|++-++.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~---v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIP---VGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEE---EESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeC---CCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 34567778889998764432 23422 1223455555566789999999999999876553
No 190
>PRK06740 histidinol-phosphatase; Validated
Probab=20.04 E-value=3.8e+02 Score=25.12 Aligned_cols=17 Identities=12% Similarity=-0.040 Sum_probs=7.9
Q ss_pred HHHHHHhCCCeEEEEeC
Q 021612 50 LAADLHLNGFKAIWMLD 66 (310)
Q Consensus 50 mi~~L~~~G~k~~~~v~ 66 (310)
+++.+++.|+++++.-|
T Consensus 276 il~~~~e~Gv~~tlgSD 292 (331)
T PRK06740 276 FLQVLAKHEVPITLSSD 292 (331)
T ss_pred HHHHHHHCCCeEEEeeC
Confidence 44444444555444433
Done!