BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021613
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X1Q|A Chain A, Crystal Structure Of Tryptophan Synthase Beta Chain From
Thermus Thermophilus Hb8
pdb|1X1Q|B Chain B, Crystal Structure Of Tryptophan Synthase Beta Chain From
Thermus Thermophilus Hb8
Length = 418
Score = 262 bits (669), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 131/201 (65%), Positives = 155/201 (77%), Gaps = 6/201 (2%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VPETL+ AL ELE+A + D F EEL LR + GR TPLY A+RL+E++ GG
Sbjct: 38 VPETLIPALEELEAAYREAKKDPAFLEELDHYLRQFAGRPTPLYHAKRLSEYW-----GG 92
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
++LKREDL HTGAHKINN +GQALLA+R GK R+IAETGAGQHGV+ ATV A FGL+C
Sbjct: 93 AQVFLKREDLLHTGAHKINNTLGQALLARRXGKRRVIAETGAGQHGVSVATVAALFGLEC 152
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+VY G +D+ RQALNVFR +LLGAEVR V +G+ TLKDAT+EAIRDW+TNV TT YILGS
Sbjct: 153 VVYXGEEDVRRQALNVFRXKLLGAEVRPVAAGSRTLKDATNEAIRDWITNVRTTFYILGS 212
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
V GPHPYP VRDF + IGE
Sbjct: 213 VVGPHPYPXXVRDFQSV-IGE 232
>pdb|1WDW|B Chain B, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|D Chain D, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|F Chain F, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|H Chain H, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|J Chain J, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|L Chain L, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
Length = 385
Score = 250 bits (638), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 156/227 (68%), Gaps = 15/227 (6%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VPETL+ L ELE A + DD +F +L+ L+ + GR TPLY+A+RLTE GG
Sbjct: 11 VPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKI-----GG 65
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
IYLKREDL H GAHK NNA+GQALLAK +GKTR+IAETGAGQHGVATA A G++
Sbjct: 66 AKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKV 125
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ +NVFRM+LLGA V V+SG+ TLKDA +EA+RDWV E THY++GS
Sbjct: 126 DIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGS 185
Query: 264 VAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWFKCHGSLPRIC 310
V GPHPYP +VRDF + +G E + + G LP +
Sbjct: 186 VVGPHPYPTIVRDFQSV----IGREAKAQ------ILEAEGQLPDVI 222
>pdb|1V8Z|A Chain A, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|B Chain B, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|C Chain C, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|D Chain D, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
Length = 388
Score = 250 bits (638), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 156/227 (68%), Gaps = 15/227 (6%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VPETL+ L ELE A + DD +F +L+ L+ + GR TPLY+A+RLTE GG
Sbjct: 11 VPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKI-----GG 65
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
IYLKREDL H GAHK NNA+GQALLAK +GKTR+IAETGAGQHGVATA A G++
Sbjct: 66 AKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKV 125
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ +NVFRM+LLGA V V+SG+ TLKDA +EA+RDWV E THY++GS
Sbjct: 126 DIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGS 185
Query: 264 VAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWFKCHGSLPRIC 310
V GPHPYP +VRDF + +G E + + G LP +
Sbjct: 186 VVGPHPYPTIVRDFQSV----IGREAKAQ------ILEAEGQLPDVI 222
>pdb|2O2E|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta
Subunit Dimer (Apoform)
pdb|2O2E|B Chain B, Mycobacterium Tuberculosis Tryptophan Synthase Beta
Subunit Dimer (Apoform)
pdb|2O2J|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta Chain
Dimer (Apoform)
pdb|2O2J|B Chain B, Mycobacterium Tuberculosis Tryptophan Synthase Beta Chain
Dimer (Apoform)
Length = 422
Score = 244 bits (623), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 117/195 (60%), Positives = 143/195 (73%), Gaps = 5/195 (2%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VPE LM + E+ +A K +DF ++L + +Y GR +PLY A RL++H G
Sbjct: 42 VPEALMAVIEEVTAAYQKERVSQDFLDDLDRLQANYAGRPSPLYEATRLSQH-----AGS 96
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
I+LKREDLNHTG+HKINN +GQALLA+R+GKTR+IAETGAGQHGVATAT CA GL C
Sbjct: 97 ARIFLKREDLNHTGSHKINNVLGQALLARRMGKTRVIAETGAGQHGVATATACALLGLDC 156
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
++YMG D RQALNV RMRLLGAEV AV +G+ TLKDA +EA RDWV N + T+Y G+
Sbjct: 157 VIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKDAINEAFRDWVANADNTYYCFGT 216
Query: 264 VAGPHPYPMMVRDFH 278
AGPHP+P MVRDF
Sbjct: 217 AAGPHPFPTMVRDFQ 231
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate
pdb|2WSY|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
pdb|2CLE|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6)-
Lowf6 Complex
pdb|2CLH|B Chain B, Tryptophan Synthase In Complex With (Naphthalene-2'-
Sulfonyl)-2-Amino-1-Ethylphosphate (F19)
pdb|2CLM|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzoyl)-2-Amino-1-
Ethylphosphate (F6f)
pdb|2CLO|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With (Naphthalene-2'-Sulfonyl)-2-Amino-1-Ethylphosphate
(F19)
pdb|2CLF|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzoyl)-2-Amino-1-Ethylphosphate (F6) -
Highf6 Complex
Length = 396
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 145/201 (72%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL++LE A + D +FQ + + +L++Y GR T L + +T R
Sbjct: 16 VPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTT---- 71
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAHK N +GQALLAKR+GK+ IIAETGAGQHGVA+A A GL+C
Sbjct: 72 --LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKC 129
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW + ET HY+LG+
Sbjct: 130 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGT 189
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 190 AAGPHPYPTIVREFQRM-IGE 209
>pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|1TTQ|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1A5S|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5- Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1C9D|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxy-4- Fluorophenylthio)-Butylphosphonic Acid
pdb|1CW2|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylsulfinyl)- Butylphosphonic Acid
pdb|1CX9|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Aminophenylthio)- Butylphosphonic Acid
pdb|1C29|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)-1- Butenylphosphonic Acid
pdb|1C8V|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2-Hydroxyphenylthio)- Butylphosphonic Acid
Length = 397
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 145/201 (72%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL++LE A + D +FQ + + +L++Y GR T L + +T R
Sbjct: 17 VPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTT---- 72
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAHK N +GQALLAKR+GK+ IIAETGAGQHGVA+A A GL+C
Sbjct: 73 --LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKC 130
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW + ET HY+LG+
Sbjct: 131 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGT 190
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 191 AAGPHPYPTIVREFQRM-IGE 210
>pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant
(Alphad60n) Tryptophan Synthase Alpha2beta2 Complex
Reveals The Correct Orientation Of Active Site Alpha Glu
49
pdb|1A5B|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant (Alpha
D60n) Tryptophan Synthase Alpha2beta2 Complex Reveals
The Correct Orientation Of Active Site Alpha Glu 49
pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+
Length = 397
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 145/201 (72%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL++LE A + D +FQ + + +L++Y GR T L + +T R
Sbjct: 17 VPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTT---- 72
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAHK N +GQALLAKR+GK+ IIAETGAGQHGVA+A A GL+C
Sbjct: 73 --LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKC 130
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW + ET HY+LG+
Sbjct: 131 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGT 190
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 191 AAGPHPYPTIVREFQRM-IGE 210
>pdb|1KFE|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With L-ser Bound To
The Beta Site
Length = 394
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 144/201 (71%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL++LE A D +FQ + + +L++Y GR T L + +T R
Sbjct: 16 VPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTT---- 71
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAHK N +GQALLAKR+GK+ IIAETGAGQHGVA+A A GL+C
Sbjct: 72 --LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKC 129
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW + ET HY+LG+
Sbjct: 130 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGT 189
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 190 AAGPHPYPTIVREFQRM-IGE 209
>pdb|1QOP|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Propanol Phosphate
pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]aspartic Acid
pdb|1K7E|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7F|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N- [1h-Indol-3-Yl-Acetyl]valine Acid
pdb|1KFB|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Glycerol Phosphate
pdb|1TJP|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 1-
[(2-Hydroxylphenyl)amino]3-Glycerolphosphate
pdb|1WBJ|B Chain B, Wildtype Tryptophan Synthase Complexed With Glycerol
Phosphate
pdb|2CLI|B Chain B, Tryptophan Synthase In Complex With N-(4'-
Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2CLK|B Chain B, Tryptophan Synthase In Complex With D-Glyceraldehyde 3-
Phosphate (G3p)
pdb|2CLL|B Chain B, Tryptophan Synthase (External Aldimine State) In Complex
With N-(4'-Trifluoromethoxybenzenesulfonyl)-2-Amino-1-
Ethylphosphate (F9)
pdb|2J9X|B Chain B, Tryptophan Synthase In Complex With Gp,
Alpha-D,L-Glycerol- Phosphate, Cs, Ph6.5 - Alpha
Aminoacrylate Form - (Gp)e(A- A)
pdb|3CEP|B Chain B, Structure Of A Tryptophan Synthase Quinonoid Intermediate
Length = 396
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 144/201 (71%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL++LE A D +FQ + + +L++Y GR T L + +T R
Sbjct: 16 VPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTT---- 71
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAHK N +GQALLAKR+GK+ IIAETGAGQHGVA+A A GL+C
Sbjct: 72 --LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKC 129
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW + ET HY+LG+
Sbjct: 130 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGT 189
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 190 AAGPHPYPTIVREFQRM-IGE 209
>pdb|3PR2|B Chain B, Tryptophan Synthase Indoline Quinonoid Structure With F9
Inhibitor In Alpha Site
Length = 391
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 144/201 (71%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL++LE A D +FQ + + +L++Y GR T L + +T R
Sbjct: 15 VPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTT---- 70
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAHK N +GQALLAKR+GK+ IIAETGAGQHGVA+A A GL+C
Sbjct: 71 --LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKC 128
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW + ET HY+LG+
Sbjct: 129 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGT 188
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 189 AAGPHPYPTIVREFQRM-IGE 208
>pdb|1K8X|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium
pdb|1KFC|B Chain B, Crystal Structure Of Alphat183v Mutant Of Tryptophan
Synthase From Salmonella Typhimurium With Indole
Propanol Phosphate
pdb|1KFJ|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With L-Serine
pdb|1KFK|B Chain B, Crystal Structure Of Tryptophan Synthase From Salmonella
Typhimurium
pdb|2RH9|B Chain B, Tryptophan Synthase Complexed With Igp, Internal Aldimine,
Ph 9.0
pdb|2RHG|B Chain B, Tryptophan Synthase Complexed With Igp, Ph 7.0, Internal
Aldimine
Length = 397
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 144/201 (71%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL++LE A D +FQ + + +L++Y GR T L + +T R
Sbjct: 17 VPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTT---- 72
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAHK N +GQALLAKR+GK+ IIAETGAGQHGVA+A A GL+C
Sbjct: 73 --LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKC 130
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW + ET HY+LG+
Sbjct: 131 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGT 190
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 191 AAGPHPYPTIVREFQRM-IGE 210
>pdb|2DH5|A Chain A, Crystal Structure Of E. Coli Holo-Trpb
pdb|2DH6|A Chain A, Crystal Structure Of E. Coli Apo-trpb
Length = 397
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/201 (57%), Positives = 143/201 (71%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL +LE A D +FQ + + +L++Y GR T L + +T G
Sbjct: 17 VPQILMPALRQLEEAFVSAQKDPEFQAQFNDLLKNYAGRPTALTKCQNITA------GTN 70
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAHK N +GQALLAKR+GKT IIAETGAGQHGVA+A A GL+C
Sbjct: 71 TTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKTEIIAETGAGQHGVASALASALLGLKC 130
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW + ET HY+LG+
Sbjct: 131 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGT 190
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 191 AAGPHPYPTIVREFQRM-IGE 210
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of
Tryptophan Synthase
pdb|1K8Y|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
D,L-Alpha-Glycerol-3-Phosphate
pdb|1K8Z|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
N-[1h-Indol-3-Yl-Acetyl]glycine Acid
Length = 396
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 144/201 (71%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL++LE A D +FQ + + +L++Y GR T L + +T R
Sbjct: 16 VPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTT---- 71
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAHK N +GQALLAKR+GK+ IIAETGAGQHGVA+A A GL+C
Sbjct: 72 --LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKC 129
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW + ET HY+LG+
Sbjct: 130 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWPGSYETAHYMLGT 189
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 190 AAGPHPYPTIVREFQRM-IGE 209
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys
87->thr In The B Subunit And In The Presence Of Ligand
L-Serine
pdb|2TRS|B Chain B, Crystal Structures Of Mutant (betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-induced Conformational Changes
pdb|2TSY|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 113/201 (56%), Positives = 144/201 (71%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL++LE A + D +FQ + + +L++Y GR T L + +T R
Sbjct: 17 VPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTT---- 72
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAH N +GQALLAKR+GK+ IIAETGAGQHGVA+A A GL+C
Sbjct: 73 --LYLKREDLLHGGAHTTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKC 130
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW + ET HY+LG+
Sbjct: 131 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGT 190
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 191 AAGPHPYPTIVREFQRM-IGE 210
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 224 bits (570), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 113/201 (56%), Positives = 144/201 (71%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL++LE A + D +FQ + + +L++Y GR T L + +T R
Sbjct: 17 VPQILMPALNQLEEAFVRAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTT---- 72
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAH N +GQALLAKR+GK+ IIAETGAGQHGVA+A A GL+C
Sbjct: 73 --LYLKREDLLHGGAHTTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKC 130
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW + ET HY+LG+
Sbjct: 131 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGT 190
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 191 AAGPHPYPTIVREFQRM-IGE 210
>pdb|2J9Y|B Chain B, Tryptophan Synthase Q114n Mutant In Complex With Compound
Ii
Length = 397
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 113/201 (56%), Positives = 143/201 (71%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL++LE A D +FQ + + +L++Y GR T L + +T R
Sbjct: 17 VPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTT---- 72
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAHK N +GQALLAKR+GK+ IIAETGAG HGVA+A A GL+C
Sbjct: 73 --LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGNHGVASALASALLGLKC 130
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW + ET HY+LG+
Sbjct: 131 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGT 190
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 191 AAGPHPYPTIVREFQRM-IGE 210
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
Length = 396
Score = 223 bits (568), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 113/201 (56%), Positives = 143/201 (71%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL++LE A D +FQ + + +L++Y GR T L + +T R
Sbjct: 16 VPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTT---- 71
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAHK N +GQALLAKR+GK+ IIAETGAGQHGVA+A A GL+C
Sbjct: 72 --LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKC 129
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+ DW + ET HY+LG+
Sbjct: 130 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALADWSGSYETAHYMLGT 189
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 190 AAGPHPYPTIVREFQRM-IGE 209
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF
TRYPTOPHAN Synthase Complexed With
5-Fluoro-Indole-Propanol Phosphate
Length = 396
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/201 (56%), Positives = 143/201 (71%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL++LE A D +FQ + + +L++Y GR T L + +T R
Sbjct: 16 VPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTT---- 71
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAHK N +GQALLAKR+GK+ IIAETGAGQHGVA+A A GL+C
Sbjct: 72 --LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKC 129
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKD +EA+RDW + ET HY+LG+
Sbjct: 130 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDLWNEALRDWSGSYETAHYMLGT 189
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 190 AAGPHPYPTIVREFQRM-IGE 209
>pdb|2J9Z|B Chain B, Tryptophan Synthase T110 Mutant Complex
Length = 397
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/201 (55%), Positives = 142/201 (70%), Gaps = 7/201 (3%)
Query: 84 VPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGG 143
VP+ LM AL++LE A D +FQ + + +L++Y GR T L + +T R
Sbjct: 17 VPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTT---- 72
Query: 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203
+YLKREDL H GAHK N +GQALLAKR+GK+ IIAE GAG HGVA+A A GL+C
Sbjct: 73 --LYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAEVGAGNHGVASALASALLGLKC 130
Query: 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS 263
+YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW + ET HY+LG+
Sbjct: 131 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGT 190
Query: 264 VAGPHPYPMMVRDFHATSIGE 284
AGPHPYP +VR+F IGE
Sbjct: 191 AAGPHPYPTIVREFQRM-IGE 210
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 19/117 (16%)
Query: 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL--AKRLGK 176
+GR TPL R+T +G I K E N A+ + + +G A+L A++ G
Sbjct: 13 LIGR-TPLVRLRRVT------DGAVADIVAKLEFFNP--ANSVKDRIGVAMLQAAEQAGL 63
Query: 177 TR---IIAETGAGQHGVATATVCARFGLQCIVYM-GAQDMERQALNVFRMRLLGAEV 229
+ II E +G G+A A VCA G +C++ M +ER+ L +R GAE+
Sbjct: 64 IKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRML----LRAYGAEL 116
>pdb|4D96|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D96|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With 1- Amino-1-Carboxycyclopropane (Acc)
pdb|4D9B|A Chain A, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|B Chain B, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|C Chain C, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9B|D Chain D, Pyridoxamine 5' Phosphate (Pmp) Bound Form Of Salmonella
Typhimurium D-Cysteine Desulfhydrase Obtained After
Co-Crystallization With D- Cycloserine
pdb|4D9C|A Chain A, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|B Chain B, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|C Chain C, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9C|D Chain D, Pmp Bound Form Of Salmonella Typhimurium D-Cysteine
Desulfhydrase Obtained After Co-Crystallization With
L-Cycloserine
pdb|4D9E|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9E|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With L- Cycloserine (Lcs)
pdb|4D9F|A Chain A, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|B Chain B, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|C Chain C, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
pdb|4D9F|D Chain D, D-Cysteine Desulfhydrase From Salmonella Typhimurium
Complexed With D- Cycloserine (Dcs)
Length = 342
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLN--HTGAHKINNAVGQALLAKRL- 174
+++G TPL + RL+++ R IY+KR+D+ G +K+ + L+A L
Sbjct: 27 EFIGAPTPLEYLPRLSDYLGR------EIYIKRDDVTPIAMGGNKLRKL--EFLVADALR 78
Query: 175 --GKTRIIAETGAGQHGVATATVCARFGLQCIVYM 207
T I A H TA V A+ GL C+ +
Sbjct: 79 EGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALL 113
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 19/117 (16%)
Query: 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL--AKRLGK 176
+GR TPL R+T +G I K E N A+ + + +G A+L A++ G
Sbjct: 13 LIGR-TPLVRLRRVT------DGAVADIVAKLEFFNP--ANSVXDRIGVAMLQAAEQAGL 63
Query: 177 TR---IIAETGAGQHGVATATVCARFGLQCIVYM-GAQDMERQALNVFRMRLLGAEV 229
+ II E +G G+A A VCA G +C++ M +ER+ L +R GAE+
Sbjct: 64 IKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRML----LRAYGAEL 116
>pdb|4D8T|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8T|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 2.2 A Resolution
pdb|4D8U|A Chain A, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|B Chain B, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|C Chain C, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|D Chain D, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|E Chain E, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|F Chain F, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|G Chain G, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8U|H Chain H, Crystal Structure Of D-Cysteine Desulfhydrase From
Salmonella Typhimurium At 3.3 A In Monoclinic Space
Group With 8 Subunits In The Asymmetric Unit
pdb|4D8W|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D8W|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With D-Cys Shows Pyruvate Bound 4 A Away From Active
Site
pdb|4D92|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D92|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase Soaked
With Beta- Chloro-D-Alanine Shows Pyruvate Bound 4 A
Away From Active Site
pdb|4D99|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
pdb|4D99|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With L-Ser
Bound Non- Covalently At The Active Site
Length = 342
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKRED-----LNHTGAHKINNAVGQALLAK 172
+++G TPL + RL+++ R IY+KR+D + K+ V AL +
Sbjct: 27 EFIGAPTPLEYLPRLSDYLGR------EIYIKRDDVTPIAMGGNXLRKLEFLVADAL--R 78
Query: 173 RLGKTRIIAETGAGQHGVATATVCARFGLQCIVYM 207
T I A H TA V A+ GL C+ +
Sbjct: 79 EGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALL 113
>pdb|4D97|A Chain A, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|B Chain B, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|C Chain C, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
pdb|4D97|D Chain D, Salmonella Typhimurium D-Cysteine Desulfhydrase With D-Ser
Bound At Active Site
Length = 346
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKRED-----LNHTGAHKINNAVGQALLAK 172
+++G TPL + RL+++ R IY+KR+D + K+ V AL +
Sbjct: 27 EFIGAPTPLEYLPRLSDYLGR------EIYIKRDDVTPIAMGGNXLRKLEFLVADAL--R 78
Query: 173 RLGKTRIIAETGAGQHGVATATVCARFGLQCIVYM 207
T I A H TA V A+ GL C+ +
Sbjct: 79 EGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALL 113
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 18/112 (16%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL--AKRLGKTR--- 178
TPL R+T +G + K E N G+ I + +G A++ A++ G +
Sbjct: 18 TPLVRLRRVT------DGAAADVVAKLESFNPAGS--IKDRIGVAMIDAAEKAGLIKPDT 69
Query: 179 IIAETGAGQHGVATATVCARFGLQCIVYM-GAQDMERQALNVFRMRLLGAEV 229
II E +G G+A A V A G +C++ M +ER+ L +R GAE+
Sbjct: 70 IILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRML----LRAYGAEL 117
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 18/112 (16%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL--AKRLGKTR--- 178
TPL R+T +G + K E N G+ I + +G A++ A++ G +
Sbjct: 18 TPLVRLRRVT------DGAAADVVAKLESFNPAGS--IKDRIGVAMIDAAEKAGLIKPDT 69
Query: 179 IIAETGAGQHGVATATVCARFGLQCIVYM-GAQDMERQALNVFRMRLLGAEV 229
II E +G G+A A V A G +C++ M +ER+ L +R GAE+
Sbjct: 70 IILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRML----LRAYGAEL 117
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKIN---NAVGQALLAKRLGKTRII 180
TPL +TEH R G I +K E N + K N V QA+ RL I
Sbjct: 24 TPLVELHGVTEHPRIKKG--TRILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEI 81
Query: 181 AETGAGQHGVATATVCARFGLQCIVYM-GAQDMERQALNVFRMRLLGAEV 229
E+ +G G+A A FG + + M +ERQ + M+ GAE+
Sbjct: 82 IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMI----MKAFGAEL 127
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKIN---NAVGQALLAKRLGKTRII 180
TPL +TEH R G I +K E N + K N V QA+ RL I
Sbjct: 23 TPLVELHGVTEHPRIKKG--TRILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEI 80
Query: 181 AETGAGQHGVATATVCARFGLQCIVYM-GAQDMERQALNVFRMRLLGAEV 229
E+ +G G+A A FG + + M +ERQ + M+ GAE+
Sbjct: 81 IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMI----MKAFGAEL 126
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 145 HIYLKREDLNHTGAHK-------INNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCA 197
+Y K E LN G+ K + +A Q LL + G T I E +G G+ A CA
Sbjct: 78 EMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLL--KPGYT--IIEPTSGNTGIGLAMACA 133
Query: 198 RFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229
G +CI+ M + M + V +R LGA++
Sbjct: 134 VKGYKCIIVM-PEKMSNE--KVSALRTLGAKI 162
>pdb|1RQX|A Chain A, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|B Chain B, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|C Chain C, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1RQX|D Chain D, Crystal Structure Of Acc Deaminase Complexed With
Inhibitor
pdb|1TYZ|A Chain A, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|B Chain B, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|C Chain C, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TYZ|D Chain D, Crystal Structure Of 1-aminocyclopropane-1-carboyxlate
Deaminase From Pseudomonas
pdb|1TZ2|A Chain A, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|B Chain B, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|C Chain C, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZ2|D Chain D, Crystal Structure Of 1-Aminocyclopropane-1-Carboyxlate
Deaminase Complexed With Acc
pdb|1TZJ|A Chain A, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|B Chain B, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|C Chain C, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZJ|D Chain D, Crystal Structure Of 1-Aminocyclopropane-1-Carboxylate
Deaminase Complexed With D-Vinyl Glycine
pdb|1TZK|A Chain A, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|B Chain B, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|C Chain C, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZK|D Chain D, Crystal Structure Of
1-Aminocyclopropane-1-Carboxylate-Deaminase Complexed
With Alpha-Keto-Butyrate
pdb|1TZM|A Chain A, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|B Chain B, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|C Chain C, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
pdb|1TZM|D Chain D, Crystal Structure Of Acc Deaminase Complexed With
Substrate Analog B- Chloro-d-alanine
Length = 338
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVG-QALLAKRLGKT-RIIA 181
TP+ RL++H GG H+Y KRED N A N + L+ + L + +
Sbjct: 16 TPIQPLARLSKHL----GGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLV 71
Query: 182 ETGAGQHGVA--TATVCARFGLQCIV----YMGAQDMERQALNVFRM-RLLGAEVRAVHS 234
G Q A V A G++C++ ++ D + +M R+LGA+VR V
Sbjct: 72 SIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPD 131
Query: 235 G 235
G
Sbjct: 132 G 132
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 124 TPLYFAER------LTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL--LAKRLG 175
+PL F ER + + PNG ++LK E N + + + L++R+
Sbjct: 86 SPLDFFERGKPTPLVRSRLQLPNG--VRVWLKLEWYNPFSLSVADRPAVEIISRLSRRVE 143
Query: 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYM-GAQDMERQALNVFRMRLLGAEV----- 229
K ++A+ + GVA + V +G + VY+ GA + + L RLLGA+V
Sbjct: 144 KGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLP----RLLGAQVIVDPE 199
Query: 230 --RAVHSGTATLKDATSEAI 247
VH +KD+ +E
Sbjct: 200 APSTVHLLPRVMKDSKNEGF 219
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 124 TPLYFAER------LTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL--LAKRLG 175
+PL F ER + + PNG ++LK E N + + + L++R+
Sbjct: 86 SPLDFFERGKPTPLVRSRLQLPNG--VRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVE 143
Query: 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYM-GAQDMERQALNVFRMRLLGAEV----- 229
K ++A+ + GVA + V +G + VY+ GA + + L RLLGA+V
Sbjct: 144 KGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLP----RLLGAQVIVDPE 199
Query: 230 --RAVHSGTATLKDATSEAI 247
VH +KD+ +E
Sbjct: 200 APSTVHLLPRVMKDSKNEGF 219
>pdb|1J0E|A Chain A, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|B Chain B, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|C Chain C, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|D Chain D, Acc Deaminase Mutant Reacton Intermediate
Length = 341
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 29/162 (17%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRL--GKTRIIA 181
+P+ RL++H G ++Y KRED N A N + + G +
Sbjct: 16 SPISNLNRLSQHL----GSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLV 71
Query: 182 ETGAGQHGVA--TATVCARFGLQCIVYM--------GAQDMERQALNVFRMRLLGAEVRA 231
G Q A + A+ G +C++ +D+ + N+ R++GA+VR
Sbjct: 72 SIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRV 131
Query: 232 VHSG-TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM 272
+ G ++ + + A+++ AG PYP+
Sbjct: 132 IEDGFDIGMRKSFANALQEL------------EDAGHKPYPI 161
>pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|B Chain B, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|C Chain C, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|D Chain D, 1-Aminocyclopropane-1-Carboxylate Deaminase
Length = 341
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 16/124 (12%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRL--GKTRIIA 181
+P+ RL++H G ++Y KRED N A N + + G +
Sbjct: 16 SPISNLNRLSQHL----GSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLV 71
Query: 182 ETGAGQHGVA--TATVCARFGLQCIVYM--------GAQDMERQALNVFRMRLLGAEVRA 231
G Q A + A+ G +C++ +D+ + N+ R++GA+VR
Sbjct: 72 SIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRV 131
Query: 232 VHSG 235
+ G
Sbjct: 132 IEDG 135
>pdb|1J0C|A Chain A, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|B Chain B, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|C Chain C, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|D Chain D, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0D|A Chain A, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|B Chain B, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|C Chain C, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|D Chain D, Acc Deaminase Mutant Complexed With Acc
Length = 341
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 16/124 (12%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRL--GKTRIIA 181
+P+ RL++H G ++Y KRED N A N + + G +
Sbjct: 16 SPISNLNRLSQHL----GSKVNVYAKREDCNSGLAFGGNTLRKLEYIVPDIVEGDYTHLV 71
Query: 182 ETGAGQHGVA--TATVCARFGLQCIVYM--------GAQDMERQALNVFRMRLLGAEVRA 231
G Q A + A+ G +C++ +D+ + N+ R++GA+VR
Sbjct: 72 SIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRV 131
Query: 232 VHSG 235
+ G
Sbjct: 132 IEDG 135
>pdb|2GN0|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|C Chain C, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|D Chain D, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN1|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN1|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN2|A Chain A, Crystal Structure Of Tetrameric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium In Complex
With Cmp At 2.5a Resolution (Hexagonal Form)
Length = 342
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 127 YFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAG 186
YF+ER I+LK E++ TG+ I A + K + + AG
Sbjct: 48 YFSERCK----------GEIFLKFENMQRTGSFXIRGAFNKLSSLTEAEKRKGVVACSAG 97
Query: 187 QHGVATATVCARFGLQCIVYM 207
H + CA G+ V M
Sbjct: 98 NHAQGVSLSCAMLGIDGKVVM 118
>pdb|1J0A|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0A|B Chain B, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0A|C Chain C, Crystal Structure Analysis Of The Acc Deaminase Homologue
pdb|1J0B|A Chain A, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|B Chain B, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|C Chain C, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|D Chain D, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|E Chain E, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|F Chain F, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|G Chain G, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|H Chain H, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|I Chain I, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|J Chain J, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|K Chain K, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|L Chain L, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|M Chain M, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|N Chain N, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|O Chain O, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|P Chain P, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|Q Chain Q, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|R Chain R, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|S Chain S, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|T Chain T, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|U Chain U, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|V Chain V, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|W Chain W, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
pdb|1J0B|X Chain X, Crystal Structure Analysis Of The Acc Deaminase Homologue
Complexed With Inhiitor
Length = 325
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 15/114 (13%)
Query: 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLN--HTGAHKINNAVGQALLAKRLGK-TRI 179
ETP+ + ++ G +Y+KR+DL G +KI + LL L K +
Sbjct: 21 ETPIQYLPNISREI------GADVYIKRDDLTGLGIGGNKIRKL--EYLLGDALSKGADV 72
Query: 180 IAETGA--GQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231
+ GA H T + GL I+ + + E N +++G E R
Sbjct: 73 VITVGAVHSNHAFVTGLAAKKLGLDAILVL--RGKEELKGNYLLDKIMGIETRV 124
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 120 VGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA--LLAKRLGKT 177
V E+PL AE+L++ G + Y+KRED + + A L + L K
Sbjct: 57 VAIESPLELAEKLSDRL------GVNFYIKREDKQRVFSFXLRGAYNMMSNLSREELDKG 110
Query: 178 RIIAETGAGQHGVATA 193
I A G GVA A
Sbjct: 111 VITASAGNHAQGVALA 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,698,362
Number of Sequences: 62578
Number of extensions: 328433
Number of successful extensions: 720
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 46
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)