Query 021613
Match_columns 310
No_of_seqs 277 out of 2611
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:20:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0133 TrpB Tryptophan syntha 100.0 1.9E-59 4E-64 437.5 18.5 221 69-300 2-222 (396)
2 PRK04346 tryptophan synthase s 100.0 5.6E-53 1.2E-57 412.9 25.8 236 68-308 3-261 (397)
3 PLN02618 tryptophan synthase, 100.0 2.1E-52 4.6E-57 410.0 26.8 249 60-308 3-274 (410)
4 PRK13028 tryptophan synthase s 100.0 1.6E-51 3.5E-56 403.2 26.1 238 65-307 4-264 (402)
5 KOG1395 Tryptophan synthase be 100.0 9.3E-50 2E-54 375.9 17.4 280 3-300 8-290 (477)
6 PRK13803 bifunctional phosphor 100.0 7.3E-48 1.6E-52 395.2 24.5 234 69-308 217-473 (610)
7 PRK13802 bifunctional indole-3 100.0 1.5E-47 3.4E-52 394.7 24.9 233 72-308 275-535 (695)
8 TIGR00263 trpB tryptophan synt 100.0 1.1E-44 2.4E-49 353.9 24.0 229 74-307 1-252 (385)
9 COG1171 IlvA Threonine dehydra 100.0 4.8E-35 1.1E-39 279.8 18.2 191 87-309 4-212 (347)
10 cd06446 Trp-synth_B Tryptophan 100.0 8.4E-34 1.8E-38 275.4 22.3 214 90-308 1-237 (365)
11 PRK08526 threonine dehydratase 100.0 4.7E-33 1E-37 273.5 19.6 190 90-309 2-205 (403)
12 PRK07476 eutB threonine dehydr 100.0 2.3E-32 4.9E-37 261.1 19.9 187 91-307 2-202 (322)
13 PRK06382 threonine dehydratase 100.0 2.8E-32 6E-37 268.2 21.1 190 89-308 6-209 (406)
14 PRK08198 threonine dehydratase 100.0 2.7E-32 5.7E-37 267.7 20.5 189 90-308 4-206 (404)
15 PLN02970 serine racemase 100.0 5.4E-32 1.2E-36 259.2 20.7 190 89-308 8-211 (328)
16 PRK06110 hypothetical protein; 100.0 6.2E-32 1.3E-36 258.1 20.2 189 89-308 2-205 (322)
17 PRK08639 threonine dehydratase 100.0 3.6E-32 7.7E-37 268.5 18.1 194 90-309 7-216 (420)
18 PRK12483 threonine dehydratase 100.0 1.2E-31 2.6E-36 270.5 19.6 183 110-308 25-222 (521)
19 PRK08638 threonine dehydratase 100.0 2.5E-31 5.3E-36 255.4 20.1 189 91-308 10-211 (333)
20 PRK07048 serine/threonine dehy 100.0 2.5E-31 5.4E-36 253.5 20.0 191 89-308 5-208 (321)
21 TIGR02079 THD1 threonine dehyd 100.0 1.2E-31 2.6E-36 264.0 18.3 183 115-309 9-205 (409)
22 PRK08813 threonine dehydratase 100.0 3E-31 6.5E-36 256.1 20.3 181 91-309 22-214 (349)
23 TIGR02991 ectoine_eutB ectoine 100.0 5.5E-31 1.2E-35 251.3 20.6 188 91-308 2-203 (317)
24 PRK06608 threonine dehydratase 100.0 3.9E-31 8.4E-36 254.5 19.0 190 88-309 3-208 (338)
25 PRK07334 threonine dehydratase 100.0 6.6E-31 1.4E-35 258.1 19.1 190 89-308 4-207 (403)
26 cd01562 Thr-dehyd Threonine de 100.0 1.2E-30 2.6E-35 245.7 19.1 185 93-307 2-200 (304)
27 cd06447 D-Ser-dehyd D-Serine d 100.0 1.5E-30 3.3E-35 255.4 20.5 209 91-307 19-280 (404)
28 PRK06815 hypothetical protein; 100.0 2.1E-30 4.5E-35 247.1 20.2 189 91-308 3-204 (317)
29 PLN02550 threonine dehydratase 100.0 9.3E-31 2E-35 266.4 18.7 181 110-308 97-294 (591)
30 PRK11761 cysM cysteine synthas 100.0 1.6E-30 3.5E-35 245.9 18.9 181 115-308 5-203 (296)
31 TIGR01138 cysM cysteine syntha 100.0 2.7E-30 5.9E-35 243.6 20.1 180 116-308 2-199 (290)
32 PRK08246 threonine dehydratase 100.0 2.7E-30 5.8E-35 245.8 19.6 187 89-308 4-201 (310)
33 TIGR01127 ilvA_1Cterm threonin 100.0 1.6E-30 3.5E-35 253.1 18.4 171 124-309 1-185 (380)
34 TIGR01124 ilvA_2Cterm threonin 100.0 2.9E-30 6.4E-35 259.7 20.3 183 110-308 5-202 (499)
35 KOG1250 Threonine/serine dehyd 100.0 1E-30 2.2E-35 250.5 15.3 178 115-310 59-253 (457)
36 PRK09224 threonine dehydratase 100.0 4.2E-30 9.1E-35 259.0 20.5 181 110-308 8-205 (504)
37 TIGR01136 cysKM cysteine synth 100.0 4.9E-30 1.1E-34 242.3 19.7 178 118-308 3-199 (299)
38 PLN02565 cysteine synthase 100.0 4.8E-30 1.1E-34 245.4 19.5 180 116-308 9-208 (322)
39 PRK06381 threonine synthase; V 100.0 5.4E-30 1.2E-34 243.9 18.8 171 113-298 6-190 (319)
40 PLN03013 cysteine synthase 100.0 8.1E-30 1.8E-34 251.2 20.2 182 115-308 116-316 (429)
41 TIGR01415 trpB_rel pyridoxal-p 100.0 9.6E-30 2.1E-34 251.1 20.7 199 91-295 29-265 (419)
42 cd01561 CBS_like CBS_like: Thi 100.0 2.1E-29 4.5E-34 236.9 20.2 173 123-308 2-196 (291)
43 PLN00011 cysteine synthase 100.0 2.8E-29 6.1E-34 240.0 20.3 181 116-308 11-210 (323)
44 TIGR01139 cysK cysteine syntha 100.0 2.3E-29 4.9E-34 237.5 19.3 178 118-308 3-199 (298)
45 PRK07591 threonine synthase; V 100.0 5.9E-30 1.3E-34 252.9 16.0 174 120-309 87-277 (421)
46 PRK08197 threonine synthase; V 100.0 5.4E-30 1.2E-34 251.0 15.3 177 120-309 77-266 (394)
47 cd06448 L-Ser-dehyd Serine deh 100.0 2.1E-29 4.6E-34 240.3 18.7 175 123-309 1-194 (316)
48 PRK02991 D-serine dehydratase; 100.0 3.1E-29 6.7E-34 248.7 20.4 198 90-309 41-305 (441)
49 TIGR02035 D_Ser_am_lyase D-ser 100.0 1.7E-29 3.7E-34 249.9 18.1 210 88-308 34-299 (431)
50 PRK10717 cysteine synthase A; 100.0 4.3E-29 9.3E-34 239.0 20.3 184 115-308 6-212 (330)
51 PRK06352 threonine synthase; V 100.0 2.5E-29 5.4E-34 243.0 18.7 175 119-308 25-210 (351)
52 PLN02556 cysteine synthase/L-3 100.0 3.3E-29 7.1E-34 243.7 19.4 182 115-308 52-252 (368)
53 COG0031 CysK Cysteine synthase 100.0 2.1E-29 4.5E-34 237.2 16.5 182 116-308 5-205 (300)
54 PLN02356 phosphateglycerate ki 100.0 1.3E-29 2.8E-34 249.6 15.7 184 115-308 46-286 (423)
55 PRK06450 threonine synthase; V 100.0 6.1E-30 1.3E-34 246.3 13.0 160 119-309 55-231 (338)
56 PRK05638 threonine synthase; V 100.0 4.5E-29 9.7E-34 247.9 19.3 173 117-309 61-247 (442)
57 PRK12391 tryptophan synthase s 100.0 5.2E-29 1.1E-33 246.3 19.5 210 91-308 39-293 (427)
58 PRK06260 threonine synthase; V 100.0 5.4E-29 1.2E-33 244.1 18.6 174 119-309 64-253 (397)
59 PLN02569 threonine synthase 100.0 1.1E-28 2.4E-33 247.3 18.7 174 120-309 131-325 (484)
60 PRK08329 threonine synthase; V 100.0 1.6E-28 3.4E-33 237.1 19.0 166 120-309 62-240 (347)
61 TIGR01137 cysta_beta cystathio 100.0 3E-28 6.5E-33 241.5 19.5 181 116-308 5-206 (454)
62 PRK07409 threonine synthase; V 100.0 3.3E-28 7.1E-33 235.1 19.2 166 119-299 28-204 (353)
63 KOG1251 Serine racemase [Signa 100.0 1.3E-28 2.7E-33 224.0 14.1 183 89-307 6-208 (323)
64 cd01563 Thr-synth_1 Threonine 100.0 1.9E-28 4.2E-33 233.4 16.1 165 119-299 19-196 (324)
65 PRK06721 threonine synthase; R 100.0 8.4E-28 1.8E-32 232.4 19.6 173 119-308 25-217 (352)
66 PRK08206 diaminopropionate amm 100.0 9.1E-28 2E-32 235.9 19.6 198 79-308 16-265 (399)
67 cd00640 Trp-synth-beta_II Tryp 100.0 1.3E-27 2.7E-32 218.8 18.9 163 124-300 1-179 (244)
68 TIGR01275 ACC_deam_rel pyridox 100.0 3.2E-27 7E-32 223.9 17.6 170 118-300 2-195 (311)
69 TIGR00260 thrC threonine synth 99.9 1.9E-27 4.2E-32 226.9 15.2 162 122-298 22-199 (328)
70 TIGR01747 diampropi_NH3ly diam 99.9 3E-26 6.5E-31 223.5 19.8 180 112-308 13-244 (376)
71 TIGR03528 2_3_DAP_am_ly diamin 99.9 3.2E-26 7E-31 224.7 19.3 181 112-308 32-263 (396)
72 PRK12390 1-aminocyclopropane-1 99.9 1.3E-25 2.9E-30 215.6 18.3 180 119-307 12-224 (337)
73 PF00291 PALP: Pyridoxal-phosp 99.9 2.3E-26 4.9E-31 215.5 11.6 177 117-307 2-200 (306)
74 cd06449 ACCD Aminocyclopropane 99.9 1.6E-25 3.5E-30 212.2 16.9 180 124-308 1-210 (307)
75 PRK03910 D-cysteine desulfhydr 99.9 1.9E-25 4.1E-30 214.0 17.4 181 116-307 9-218 (331)
76 TIGR01274 ACC_deam 1-aminocycl 99.9 3.8E-25 8.2E-30 212.5 18.5 180 122-307 13-223 (337)
77 TIGR03844 cysteate_syn cysteat 99.9 4.6E-26 9.9E-31 223.7 12.1 169 123-309 62-255 (398)
78 KOG1252 Cystathionine beta-syn 99.9 9.8E-26 2.1E-30 213.0 13.7 180 116-307 46-247 (362)
79 PRK14045 1-aminocyclopropane-1 99.9 2.9E-25 6.2E-30 212.8 16.5 181 115-307 14-219 (329)
80 COG1350 Predicted alternative 99.9 2.9E-25 6.3E-30 208.8 12.3 192 91-300 39-253 (432)
81 COG0498 ThrC Threonine synthas 99.9 9.1E-24 2E-28 207.3 17.7 216 74-309 21-265 (411)
82 KOG1481 Cysteine synthase [Ami 99.9 1.3E-23 2.9E-28 194.3 10.6 199 92-301 16-240 (391)
83 PRK09225 threonine synthase; V 99.9 6.9E-21 1.5E-25 190.1 16.2 205 74-299 21-269 (462)
84 cd01560 Thr-synth_2 Threonine 99.8 2.8E-20 6E-25 185.7 17.8 204 74-299 20-271 (460)
85 COG2515 Acd 1-aminocyclopropan 99.7 2.1E-16 4.6E-21 148.2 13.6 173 118-300 10-206 (323)
86 COG3048 DsdA D-serine dehydrat 99.0 7.5E-10 1.6E-14 104.5 7.5 132 123-261 78-237 (443)
87 PF14821 Thr_synth_N: Threonin 89.7 0.34 7.4E-06 37.2 3.0 42 75-120 21-62 (79)
88 PF05368 NmrA: NmrA-like famil 84.9 4.8 0.00011 35.9 8.1 52 179-234 1-52 (233)
89 PF00106 adh_short: short chai 84.9 10 0.00023 31.3 9.7 75 178-253 2-77 (167)
90 PRK06128 oxidoreductase; Provi 79.5 26 0.00056 32.6 11.1 75 177-252 56-130 (300)
91 PRK12937 short chain dehydroge 78.4 34 0.00073 30.1 11.1 76 177-254 6-81 (245)
92 PRK07523 gluconate 5-dehydroge 78.3 30 0.00064 31.0 10.8 74 177-253 11-84 (255)
93 PRK12743 oxidoreductase; Provi 77.8 33 0.00072 30.8 11.0 74 178-253 4-77 (256)
94 PRK13394 3-hydroxybutyrate deh 76.9 38 0.00081 30.2 11.0 57 177-235 8-64 (262)
95 PRK08277 D-mannonate oxidoredu 76.8 34 0.00074 31.1 10.9 74 177-253 11-84 (278)
96 COG1751 Uncharacterized conser 76.7 18 0.00039 31.7 8.2 77 156-233 8-90 (186)
97 PRK12823 benD 1,6-dihydroxycyc 76.2 35 0.00076 30.5 10.7 73 177-253 9-81 (260)
98 PF00070 Pyr_redox: Pyridine n 75.4 18 0.00039 26.9 7.2 31 181-211 3-33 (80)
99 PRK12481 2-deoxy-D-gluconate 3 74.7 37 0.0008 30.5 10.4 72 177-253 9-80 (251)
100 PRK07109 short chain dehydroge 74.3 34 0.00074 32.7 10.6 74 177-253 9-82 (334)
101 PRK06194 hypothetical protein; 74.2 46 0.001 30.3 11.1 74 177-253 7-80 (287)
102 TIGR01832 kduD 2-deoxy-D-gluco 74.1 38 0.00082 30.0 10.2 72 177-253 6-77 (248)
103 PRK08226 short chain dehydroge 73.9 40 0.00087 30.2 10.5 73 177-253 7-79 (263)
104 TIGR02825 B4_12hDH leukotriene 73.5 27 0.00059 32.6 9.5 50 177-232 140-189 (325)
105 PRK07035 short chain dehydroge 73.2 50 0.0011 29.3 10.9 75 177-254 9-83 (252)
106 TIGR02415 23BDH acetoin reduct 72.4 50 0.0011 29.3 10.6 74 178-254 2-75 (254)
107 cd08295 double_bond_reductase_ 72.3 30 0.00065 32.5 9.6 50 177-232 153-203 (338)
108 PRK12938 acetyacetyl-CoA reduc 72.0 58 0.0013 28.8 10.9 73 178-252 5-77 (246)
109 PRK12826 3-ketoacyl-(acyl-carr 71.9 47 0.001 29.2 10.2 74 177-253 7-80 (251)
110 PRK06935 2-deoxy-D-gluconate 3 71.8 50 0.0011 29.6 10.6 74 177-254 16-89 (258)
111 PRK07666 fabG 3-ketoacyl-(acyl 71.8 60 0.0013 28.6 10.9 73 177-252 8-80 (239)
112 cd08294 leukotriene_B4_DH_like 71.6 36 0.00078 31.5 9.8 51 177-233 145-195 (329)
113 PRK08063 enoyl-(acyl carrier p 71.5 58 0.0013 28.8 10.8 74 178-253 6-79 (250)
114 PRK06077 fabG 3-ketoacyl-(acyl 71.5 55 0.0012 28.9 10.6 75 177-253 7-81 (252)
115 PRK05653 fabG 3-ketoacyl-(acyl 71.2 52 0.0011 28.7 10.3 57 177-235 6-62 (246)
116 PRK05557 fabG 3-ketoacyl-(acyl 71.0 60 0.0013 28.3 10.7 74 177-252 6-79 (248)
117 TIGR03206 benzo_BadH 2-hydroxy 70.9 49 0.0011 29.2 10.2 74 178-254 5-78 (250)
118 PRK07454 short chain dehydroge 70.7 48 0.001 29.2 10.1 74 177-253 7-80 (241)
119 PRK06181 short chain dehydroge 70.6 50 0.0011 29.6 10.3 73 178-253 3-75 (263)
120 PRK08993 2-deoxy-D-gluconate 3 70.5 45 0.00097 29.9 9.9 72 177-253 11-82 (253)
121 PRK07478 short chain dehydroge 70.4 57 0.0012 29.1 10.6 73 178-253 8-80 (254)
122 PRK06947 glucose-1-dehydrogena 70.3 65 0.0014 28.4 10.9 73 178-252 4-76 (248)
123 TIGR00670 asp_carb_tr aspartat 70.2 26 0.00057 33.5 8.7 47 186-233 162-208 (301)
124 PRK12429 3-hydroxybutyrate deh 70.1 78 0.0017 28.0 11.4 74 177-253 5-78 (258)
125 PRK12745 3-ketoacyl-(acyl-carr 70.0 69 0.0015 28.4 11.0 76 178-255 4-79 (256)
126 PRK05866 short chain dehydroge 70.0 53 0.0012 30.6 10.6 74 178-254 42-115 (293)
127 PRK08213 gluconate 5-dehydroge 69.9 56 0.0012 29.2 10.4 73 177-252 13-85 (259)
128 PRK07890 short chain dehydroge 69.9 50 0.0011 29.4 10.0 75 177-254 6-80 (258)
129 PRK08217 fabG 3-ketoacyl-(acyl 69.7 56 0.0012 28.7 10.3 72 178-252 7-78 (253)
130 PRK06182 short chain dehydroge 69.3 58 0.0013 29.5 10.5 68 177-253 4-71 (273)
131 PRK12939 short chain dehydroge 69.2 60 0.0013 28.6 10.3 74 177-253 8-81 (250)
132 PRK08628 short chain dehydroge 69.1 61 0.0013 28.9 10.5 72 178-253 9-80 (258)
133 PF00107 ADH_zinc_N: Zinc-bind 69.0 19 0.00041 28.7 6.5 41 189-235 3-43 (130)
134 cd08291 ETR_like_1 2-enoyl thi 68.8 46 0.00099 31.0 9.9 49 179-233 146-195 (324)
135 PRK12744 short chain dehydroge 68.8 63 0.0014 28.9 10.5 75 178-253 10-86 (257)
136 PRK12825 fabG 3-ketoacyl-(acyl 68.7 79 0.0017 27.5 11.0 72 177-250 7-78 (249)
137 PRK07985 oxidoreductase; Provi 68.2 62 0.0013 30.1 10.6 75 178-253 51-125 (294)
138 PRK08936 glucose-1-dehydrogena 68.2 84 0.0018 28.2 11.2 74 178-253 9-82 (261)
139 PF01210 NAD_Gly3P_dh_N: NAD-d 67.8 6.8 0.00015 33.4 3.7 30 181-210 3-32 (157)
140 PRK08862 short chain dehydroge 67.7 62 0.0013 28.9 10.2 73 178-253 7-79 (227)
141 PRK07097 gluconate 5-dehydroge 67.5 64 0.0014 29.1 10.3 74 177-253 11-84 (265)
142 PRK08643 acetoin reductase; Va 67.4 71 0.0015 28.4 10.5 73 178-253 4-76 (256)
143 PRK12935 acetoacetyl-CoA reduc 67.3 79 0.0017 27.9 10.8 75 177-253 7-81 (247)
144 PRK08589 short chain dehydroge 67.1 68 0.0015 29.2 10.5 72 178-253 8-79 (272)
145 PRK06172 short chain dehydroge 66.8 66 0.0014 28.6 10.2 71 177-250 8-78 (253)
146 PRK06139 short chain dehydroge 66.8 50 0.0011 31.6 9.9 73 177-252 8-80 (330)
147 PRK08416 7-alpha-hydroxysteroi 66.5 79 0.0017 28.4 10.7 75 177-253 9-84 (260)
148 PRK06949 short chain dehydroge 66.5 73 0.0016 28.2 10.4 33 177-209 10-42 (258)
149 PRK05693 short chain dehydroge 66.3 69 0.0015 29.0 10.4 66 178-252 3-68 (274)
150 PRK08085 gluconate 5-dehydroge 65.9 89 0.0019 27.8 10.9 74 177-253 10-83 (254)
151 PRK05876 short chain dehydroge 65.7 82 0.0018 28.9 10.8 73 178-253 8-80 (275)
152 PRK05867 short chain dehydroge 65.4 82 0.0018 28.1 10.6 74 177-253 10-83 (253)
153 PRK06114 short chain dehydroge 65.3 1E+02 0.0022 27.5 11.2 74 178-253 10-83 (254)
154 PRK12828 short chain dehydroge 64.8 88 0.0019 27.1 10.4 56 177-234 8-63 (239)
155 PRK05993 short chain dehydroge 64.0 59 0.0013 29.7 9.5 64 178-250 6-69 (277)
156 cd08293 PTGR2 Prostaglandin re 63.9 66 0.0014 30.1 10.0 51 177-233 156-208 (345)
157 PLN03154 putative allyl alcoho 63.9 53 0.0011 31.4 9.4 50 177-232 160-210 (348)
158 PRK05650 short chain dehydroge 63.6 91 0.002 28.2 10.6 56 178-235 2-57 (270)
159 PRK07832 short chain dehydroge 63.6 54 0.0012 29.7 9.1 50 178-229 2-51 (272)
160 PF03853 YjeF_N: YjeF-related 63.5 71 0.0015 27.6 9.4 58 176-233 25-88 (169)
161 PRK05565 fabG 3-ketoacyl-(acyl 63.5 1E+02 0.0022 27.0 10.6 74 177-252 6-79 (247)
162 PRK06138 short chain dehydroge 63.4 96 0.0021 27.3 10.5 73 177-253 6-78 (252)
163 PRK06701 short chain dehydroge 63.4 98 0.0021 28.7 11.0 73 178-252 48-120 (290)
164 PRK07806 short chain dehydroge 63.4 1.1E+02 0.0023 27.1 11.0 72 177-250 7-78 (248)
165 PRK07677 short chain dehydroge 63.4 80 0.0017 28.1 10.1 73 178-253 3-75 (252)
166 PRK06113 7-alpha-hydroxysteroi 62.6 99 0.0022 27.6 10.6 74 177-253 12-85 (255)
167 cd08230 glucose_DH Glucose deh 62.5 46 0.00099 31.6 8.7 49 178-230 175-223 (355)
168 KOG0025 Zn2+-binding dehydroge 62.2 43 0.00094 32.5 8.2 87 145-234 124-217 (354)
169 PRK06124 gluconate 5-dehydroge 61.9 1.1E+02 0.0023 27.3 10.6 73 177-252 12-84 (256)
170 PRK07774 short chain dehydroge 61.2 1.1E+02 0.0023 27.0 10.4 73 178-253 8-80 (250)
171 TIGR03366 HpnZ_proposed putati 61.2 38 0.00083 31.1 7.7 48 178-231 123-170 (280)
172 PRK09730 putative NAD(P)-bindi 60.8 1.2E+02 0.0025 26.6 11.2 72 178-251 3-74 (247)
173 PRK08303 short chain dehydroge 60.6 1.2E+02 0.0026 28.5 11.2 76 177-253 9-92 (305)
174 PF08659 KR: KR domain; Inter 60.5 81 0.0018 27.2 9.2 74 179-253 3-78 (181)
175 PRK09135 pteridine reductase; 60.3 1.2E+02 0.0025 26.6 10.4 33 177-209 7-39 (249)
176 cd08296 CAD_like Cinnamyl alco 60.1 67 0.0015 30.1 9.3 48 177-231 165-212 (333)
177 PF04127 DFP: DNA / pantothena 60.1 44 0.00095 29.7 7.5 48 178-234 21-68 (185)
178 TIGR02822 adh_fam_2 zinc-bindi 59.9 39 0.00085 32.0 7.7 47 178-231 168-214 (329)
179 PRK07231 fabG 3-ketoacyl-(acyl 59.6 1.2E+02 0.0026 26.6 10.4 70 177-250 6-75 (251)
180 cd08256 Zn_ADH2 Alcohol dehydr 59.6 77 0.0017 29.9 9.7 49 177-231 176-224 (350)
181 PRK09242 tropinone reductase; 59.5 1.2E+02 0.0025 27.1 10.4 74 178-254 11-86 (257)
182 PRK07791 short chain dehydroge 59.5 1.4E+02 0.0029 27.6 11.1 76 178-254 8-90 (286)
183 PRK07814 short chain dehydroge 59.3 1E+02 0.0023 27.7 10.2 74 177-253 11-84 (263)
184 TIGR02819 fdhA_non_GSH formald 59.3 82 0.0018 30.9 10.1 48 177-230 187-234 (393)
185 PRK05717 oxidoreductase; Valid 59.0 1.3E+02 0.0028 26.8 10.6 71 178-254 12-82 (255)
186 PRK09134 short chain dehydroge 59.0 1.3E+02 0.0029 26.8 11.2 73 178-252 11-83 (258)
187 TIGR01831 fabG_rel 3-oxoacyl-( 58.8 1.3E+02 0.0027 26.4 10.4 72 180-253 2-73 (239)
188 cd08281 liver_ADH_like1 Zinc-d 58.6 64 0.0014 30.9 9.0 49 177-231 193-241 (371)
189 TIGR00561 pntA NAD(P) transhyd 58.5 1E+02 0.0022 32.0 10.8 49 180-234 167-215 (511)
190 TIGR01963 PHB_DH 3-hydroxybuty 58.4 1.3E+02 0.0028 26.4 11.1 70 178-250 3-72 (255)
191 PRK08340 glucose-1-dehydrogena 58.2 1.1E+02 0.0023 27.5 10.0 72 178-253 2-73 (259)
192 cd01011 nicotinamidase Nicotin 58.2 43 0.00094 29.5 7.2 62 169-230 131-196 (196)
193 cd08300 alcohol_DH_class_III c 58.2 73 0.0016 30.5 9.4 49 177-231 188-236 (368)
194 PLN03050 pyridoxine (pyridoxam 58.1 74 0.0016 29.6 9.0 53 177-229 61-117 (246)
195 PRK08251 short chain dehydroge 58.1 1.3E+02 0.0029 26.4 10.7 73 178-253 4-78 (248)
196 TIGR03325 BphB_TodD cis-2,3-di 57.9 88 0.0019 28.1 9.4 71 177-254 6-77 (262)
197 PRK07576 short chain dehydroge 57.6 1.3E+02 0.0027 27.2 10.4 74 177-253 10-83 (264)
198 cd08301 alcohol_DH_plants Plan 57.2 51 0.0011 31.5 8.1 49 177-231 189-237 (369)
199 PRK08017 oxidoreductase; Provi 56.9 1E+02 0.0023 27.2 9.6 51 178-234 4-54 (256)
200 PRK07792 fabG 3-ketoacyl-(acyl 56.4 1.5E+02 0.0033 27.6 11.0 70 178-249 14-83 (306)
201 cd08297 CAD3 Cinnamyl alcohol 56.3 93 0.002 29.0 9.6 49 177-231 167-215 (341)
202 COG0604 Qor NADPH:quinone redu 56.3 54 0.0012 31.5 8.0 50 177-232 144-193 (326)
203 TIGR01830 3oxo_ACP_reduc 3-oxo 56.0 1.2E+02 0.0027 26.2 9.8 69 180-250 2-70 (239)
204 PRK09880 L-idonate 5-dehydroge 55.5 59 0.0013 30.8 8.1 50 177-232 171-220 (343)
205 PRK07775 short chain dehydroge 55.5 1.6E+02 0.0035 26.7 10.9 71 177-250 11-81 (274)
206 PRK06198 short chain dehydroge 55.5 1.3E+02 0.0028 26.7 10.0 74 177-252 7-80 (260)
207 cd08239 THR_DH_like L-threonin 55.5 45 0.00097 31.3 7.2 49 177-231 165-213 (339)
208 PRK06483 dihydromonapterin red 54.9 1.5E+02 0.0032 26.0 10.6 67 178-252 4-70 (236)
209 PRK06463 fabG 3-ketoacyl-(acyl 54.6 1.6E+02 0.0034 26.2 10.8 69 177-253 8-76 (255)
210 PRK07063 short chain dehydroge 54.5 1.6E+02 0.0034 26.3 10.9 74 177-253 8-83 (260)
211 PRK07370 enoyl-(acyl carrier p 54.5 1.5E+02 0.0032 26.8 10.3 75 178-253 8-84 (258)
212 TIGR02818 adh_III_F_hyde S-(hy 54.2 92 0.002 29.9 9.3 49 177-231 187-235 (368)
213 PF13460 NAD_binding_10: NADH( 54.0 56 0.0012 27.5 7.0 33 179-211 1-33 (183)
214 cd08292 ETR_like_2 2-enoyl thi 53.9 1.1E+02 0.0023 28.1 9.5 32 177-208 141-172 (324)
215 PRK07326 short chain dehydroge 53.9 1.5E+02 0.0032 25.8 10.0 32 177-208 7-38 (237)
216 cd08270 MDR4 Medium chain dehy 53.8 74 0.0016 28.9 8.3 47 177-229 134-180 (305)
217 cd08284 FDH_like_2 Glutathione 53.8 1.2E+02 0.0025 28.3 9.8 47 177-229 169-215 (344)
218 TIGR01829 AcAcCoA_reduct aceto 53.6 1.5E+02 0.0033 25.8 10.5 73 178-252 2-74 (242)
219 PRK06123 short chain dehydroge 53.5 1.6E+02 0.0034 25.9 10.4 74 178-253 4-77 (248)
220 PRK08227 autoinducer 2 aldolas 53.1 91 0.002 29.4 8.8 72 164-235 96-180 (264)
221 COG0078 ArgF Ornithine carbamo 53.0 48 0.0011 32.1 6.9 56 178-234 155-214 (310)
222 cd08276 MDR7 Medium chain dehy 52.9 1.1E+02 0.0024 27.9 9.4 46 178-230 163-208 (336)
223 TIGR03451 mycoS_dep_FDH mycoth 52.9 1.1E+02 0.0023 29.2 9.5 49 177-231 178-226 (358)
224 cd08240 6_hydroxyhexanoate_dh_ 52.9 1.1E+02 0.0024 28.7 9.5 48 177-230 177-224 (350)
225 cd08233 butanediol_DH_like (2R 52.8 1.1E+02 0.0025 28.7 9.6 49 178-232 175-223 (351)
226 PLN02586 probable cinnamyl alc 52.8 68 0.0015 30.8 8.2 48 178-231 186-233 (360)
227 PLN02253 xanthoxin dehydrogena 52.7 1.4E+02 0.0031 26.9 10.0 32 177-208 19-50 (280)
228 KOG0023 Alcohol dehydrogenase, 52.6 57 0.0012 32.0 7.4 48 183-235 188-235 (360)
229 cd08287 FDH_like_ADH3 formalde 52.2 1.2E+02 0.0025 28.4 9.5 49 177-231 170-218 (345)
230 COG0300 DltE Short-chain dehyd 52.2 2.1E+02 0.0046 27.0 12.7 58 177-235 7-64 (265)
231 PRK08278 short chain dehydroge 52.0 1.7E+02 0.0036 26.6 10.3 74 178-252 8-86 (273)
232 PRK12859 3-ketoacyl-(acyl-carr 51.9 1.8E+02 0.0039 26.1 10.9 77 178-255 8-95 (256)
233 PRK07201 short chain dehydroge 51.8 1.3E+02 0.0028 31.2 10.5 75 178-255 373-447 (657)
234 PRK06500 short chain dehydroge 51.7 1.6E+02 0.0036 25.7 10.0 53 177-235 7-60 (249)
235 PRK12824 acetoacetyl-CoA reduc 51.6 1.7E+02 0.0036 25.6 10.5 73 178-252 4-76 (245)
236 PTZ00323 NAD+ synthase; Provis 51.5 2.2E+02 0.0047 27.3 11.2 64 172-235 42-114 (294)
237 PRK08265 short chain dehydroge 51.4 1.6E+02 0.0035 26.4 10.0 71 177-253 7-77 (261)
238 PF02887 PK_C: Pyruvate kinase 51.4 66 0.0014 25.9 6.7 82 164-253 5-87 (117)
239 cd08242 MDR_like Medium chain 51.3 62 0.0013 29.9 7.4 48 177-231 157-204 (319)
240 PRK06197 short chain dehydroge 51.1 1.6E+02 0.0035 27.2 10.2 74 177-253 17-92 (306)
241 PRK12827 short chain dehydroge 51.0 1.7E+02 0.0037 25.5 10.7 75 177-252 7-83 (249)
242 PRK10538 malonic semialdehyde 50.8 1.8E+02 0.0039 25.8 10.6 68 178-252 2-70 (248)
243 PF00185 OTCace: Aspartate/orn 50.0 72 0.0016 27.3 7.1 48 186-233 13-65 (158)
244 cd08231 MDR_TM0436_like Hypoth 50.0 62 0.0013 30.7 7.3 47 177-230 179-226 (361)
245 TIGR01316 gltA glutamate synth 49.9 57 0.0012 32.6 7.3 52 180-231 275-328 (449)
246 PRK08261 fabG 3-ketoacyl-(acyl 49.7 2E+02 0.0044 28.3 11.2 71 177-253 211-281 (450)
247 PF01041 DegT_DnrJ_EryC1: DegT 48.7 41 0.00089 32.4 5.9 60 173-236 37-96 (363)
248 cd05188 MDR Medium chain reduc 48.6 71 0.0015 28.1 7.1 48 177-231 136-183 (271)
249 PRK10309 galactitol-1-phosphat 48.6 93 0.002 29.3 8.3 48 177-230 162-209 (347)
250 cd05280 MDR_yhdh_yhfp Yhdh and 48.6 1E+02 0.0022 28.2 8.3 48 177-230 148-195 (325)
251 cd08243 quinone_oxidoreductase 48.5 1.4E+02 0.0031 26.9 9.3 49 177-231 144-192 (320)
252 PLN02740 Alcohol dehydrogenase 48.4 78 0.0017 30.5 7.9 48 178-231 201-248 (381)
253 PRK05854 short chain dehydroge 48.3 1.9E+02 0.0041 27.1 10.3 73 178-253 16-90 (313)
254 PF01262 AlaDh_PNT_C: Alanine 48.1 64 0.0014 27.6 6.5 49 179-233 22-70 (168)
255 TIGR01751 crot-CoA-red crotony 47.9 74 0.0016 30.9 7.6 50 177-232 191-240 (398)
256 PRK07062 short chain dehydroge 47.7 2.1E+02 0.0045 25.6 10.7 74 177-253 9-84 (265)
257 PRK07067 sorbitol dehydrogenas 47.5 1.9E+02 0.0041 25.7 9.8 71 177-253 7-77 (257)
258 PRK09291 short chain dehydroge 47.5 1.1E+02 0.0025 26.9 8.3 32 178-209 4-35 (257)
259 TIGR03201 dearomat_had 6-hydro 47.4 76 0.0016 30.1 7.5 48 178-232 169-216 (349)
260 cd08289 MDR_yhfp_like Yhfp put 47.3 61 0.0013 29.9 6.7 48 177-230 148-195 (326)
261 PRK07024 short chain dehydroge 47.3 1.6E+02 0.0034 26.3 9.2 73 178-254 4-76 (257)
262 CHL00194 ycf39 Ycf39; Provisio 47.1 92 0.002 29.2 7.9 32 178-209 2-33 (317)
263 PRK12384 sorbitol-6-phosphate 46.6 2.1E+02 0.0046 25.4 10.6 31 178-208 4-34 (259)
264 cd08246 crotonyl_coA_red croto 46.6 83 0.0018 30.3 7.7 49 177-231 195-243 (393)
265 PTZ00354 alcohol dehydrogenase 46.3 1E+02 0.0022 28.3 8.0 50 177-232 142-191 (334)
266 KOG1014 17 beta-hydroxysteroid 46.0 1.7E+02 0.0037 28.4 9.5 85 174-261 48-132 (312)
267 PRK06924 short chain dehydroge 45.9 1.9E+02 0.004 25.5 9.4 31 178-208 3-33 (251)
268 PRK05786 fabG 3-ketoacyl-(acyl 45.7 2E+02 0.0044 25.0 9.9 33 177-209 6-38 (238)
269 cd08285 NADP_ADH NADP(H)-depen 45.6 92 0.002 29.3 7.7 48 177-230 168-215 (351)
270 PF00857 Isochorismatase: Isoc 45.2 85 0.0018 26.4 6.8 61 171-231 107-171 (174)
271 cd01012 YcaC_related YcaC rela 44.9 1.7E+02 0.0036 24.6 8.5 60 172-231 84-147 (157)
272 cd08277 liver_alcohol_DH_like 44.8 92 0.002 29.8 7.7 49 177-231 186-234 (365)
273 cd08254 hydroxyacyl_CoA_DH 6-h 44.2 86 0.0019 28.9 7.2 49 177-232 167-215 (338)
274 cd05284 arabinose_DH_like D-ar 44.1 1.6E+02 0.0036 27.2 9.1 47 177-230 169-216 (340)
275 PRK13656 trans-2-enoyl-CoA red 44.1 3.5E+02 0.0076 27.2 12.5 99 152-254 14-129 (398)
276 PRK06482 short chain dehydroge 44.0 2E+02 0.0044 25.8 9.5 69 178-253 4-73 (276)
277 PRK09422 ethanol-active dehydr 43.9 1.8E+02 0.0039 27.0 9.3 49 177-232 164-213 (338)
278 cd08288 MDR_yhdh Yhdh putative 43.7 78 0.0017 29.1 6.8 49 177-231 148-196 (324)
279 cd05283 CAD1 Cinnamyl alcohol 43.6 96 0.0021 29.1 7.5 48 177-231 171-218 (337)
280 COG1064 AdhP Zn-dependent alco 43.6 1.2E+02 0.0027 29.7 8.3 52 177-234 167-218 (339)
281 cd08258 Zn_ADH4 Alcohol dehydr 43.4 2E+02 0.0044 26.6 9.6 47 177-228 166-212 (306)
282 PRK12771 putative glutamate sy 43.4 58 0.0013 33.6 6.4 53 180-232 140-207 (564)
283 cd08245 CAD Cinnamyl alcohol d 43.3 1.1E+02 0.0025 28.2 7.9 47 178-231 165-211 (330)
284 PRK11706 TDP-4-oxo-6-deoxy-D-g 43.3 1.8E+02 0.0038 28.1 9.4 58 174-235 44-101 (375)
285 cd08278 benzyl_alcohol_DH Benz 43.3 1.8E+02 0.004 27.7 9.5 50 177-232 188-237 (365)
286 PRK06079 enoyl-(acyl carrier p 43.1 1.9E+02 0.0042 25.8 9.2 31 178-208 9-41 (252)
287 PRK08264 short chain dehydroge 43.1 1.4E+02 0.003 26.2 8.0 32 177-208 7-39 (238)
288 cd08298 CAD2 Cinnamyl alcohol 42.9 1.1E+02 0.0024 28.3 7.7 46 177-229 169-214 (329)
289 PF01884 PcrB: PcrB family; I 42.8 1.7E+02 0.0037 27.1 8.7 74 159-234 137-212 (230)
290 PRK06180 short chain dehydroge 42.7 2.2E+02 0.0048 25.8 9.6 32 177-208 5-36 (277)
291 PRK07453 protochlorophyllide o 42.6 2.5E+02 0.0054 26.2 10.1 32 177-208 7-38 (322)
292 PLN02918 pyridoxine (pyridoxam 42.5 1.4E+02 0.0031 31.1 8.9 52 177-228 136-191 (544)
293 cd08244 MDR_enoyl_red Possible 42.5 2.2E+02 0.0047 26.0 9.6 47 177-229 144-190 (324)
294 PRK07856 short chain dehydroge 42.4 2.3E+02 0.005 25.1 9.5 32 177-208 7-38 (252)
295 PRK07831 short chain dehydroge 42.3 2.5E+02 0.0054 25.0 10.5 74 177-253 18-94 (262)
296 PTZ00331 alpha/beta hydrolase; 42.0 1.7E+02 0.0036 26.2 8.5 60 171-230 141-204 (212)
297 PRK12831 putative oxidoreducta 42.0 90 0.0019 31.5 7.4 52 180-231 284-337 (464)
298 cd08269 Zn_ADH9 Alcohol dehydr 41.9 1.8E+02 0.004 26.3 8.9 48 177-231 131-179 (312)
299 PRK00779 ornithine carbamoyltr 41.9 91 0.002 29.9 7.0 53 179-232 155-208 (304)
300 PRK07102 short chain dehydroge 41.8 2.4E+02 0.0051 24.8 9.4 56 178-235 3-59 (243)
301 PRK08642 fabG 3-ketoacyl-(acyl 41.7 2.4E+02 0.0053 24.7 10.6 32 177-208 6-37 (253)
302 PRK08220 2,3-dihydroxybenzoate 41.7 2.2E+02 0.0047 25.0 9.2 65 177-253 9-73 (252)
303 PLN02178 cinnamyl-alcohol dehy 41.4 1.3E+02 0.0027 29.3 8.1 49 177-231 180-228 (375)
304 COG0026 PurK Phosphoribosylami 41.3 41 0.00089 33.4 4.6 30 182-211 6-35 (375)
305 PRK11891 aspartate carbamoyltr 41.3 95 0.0021 31.5 7.3 47 186-233 253-300 (429)
306 cd08274 MDR9 Medium chain dehy 40.9 1.3E+02 0.0028 28.1 7.9 48 177-231 179-226 (350)
307 TIGR02817 adh_fam_1 zinc-bindi 40.7 1.3E+02 0.0027 27.9 7.8 49 177-231 150-199 (336)
308 KOG1205 Predicted dehydrogenas 40.7 3.3E+02 0.0072 26.0 10.9 75 177-255 13-90 (282)
309 cd00401 AdoHcyase S-adenosyl-L 40.4 83 0.0018 31.6 6.7 45 179-229 204-248 (413)
310 PRK11609 nicotinamidase/pyrazi 40.4 1.7E+02 0.0036 25.9 8.1 61 172-232 138-204 (212)
311 PRK05875 short chain dehydroge 40.1 2.8E+02 0.006 24.9 10.6 32 177-208 8-39 (276)
312 cd08259 Zn_ADH5 Alcohol dehydr 40.0 1.5E+02 0.0033 27.1 8.1 32 177-208 164-195 (332)
313 cd01075 NAD_bind_Leu_Phe_Val_D 39.6 1.8E+02 0.0038 25.9 8.1 45 162-206 7-57 (200)
314 PRK13376 pyrB bifunctional asp 39.3 1.8E+02 0.004 30.2 9.1 54 180-234 177-234 (525)
315 PRK07074 short chain dehydroge 39.3 2.7E+02 0.0059 24.6 9.9 31 178-208 4-34 (257)
316 PLN02342 ornithine carbamoyltr 38.9 1.7E+02 0.0036 28.8 8.4 28 184-211 201-229 (348)
317 PRK04284 ornithine carbamoyltr 38.8 91 0.002 30.3 6.6 29 183-211 161-191 (332)
318 PF02737 3HCDH_N: 3-hydroxyacy 38.7 46 0.001 29.1 4.2 29 182-210 4-32 (180)
319 smart00822 PKS_KR This enzymat 38.4 2.1E+02 0.0045 22.9 10.2 58 178-235 2-61 (180)
320 PRK06200 2,3-dihydroxy-2,3-dih 38.3 2.9E+02 0.0063 24.6 10.6 70 177-253 7-77 (263)
321 PLN02514 cinnamyl-alcohol dehy 38.0 1.5E+02 0.0032 28.4 7.9 48 178-231 183-230 (357)
322 PRK07904 short chain dehydroge 38.0 3E+02 0.0065 24.7 10.0 56 178-234 10-67 (253)
323 cd08260 Zn_ADH6 Alcohol dehydr 37.7 1.4E+02 0.003 27.9 7.6 44 178-228 168-211 (345)
324 cd08251 polyketide_synthase po 37.5 2.9E+02 0.0062 24.6 9.4 46 177-228 122-167 (303)
325 PRK05872 short chain dehydroge 37.3 3.4E+02 0.0073 25.0 10.1 31 177-207 10-40 (296)
326 PLN02827 Alcohol dehydrogenase 37.1 1.6E+02 0.0035 28.4 8.1 47 178-230 196-242 (378)
327 PRK10754 quinone oxidoreductas 37.0 2E+02 0.0044 26.5 8.5 48 177-230 142-189 (327)
328 PRK09424 pntA NAD(P) transhydr 36.9 1.9E+02 0.0041 30.0 8.8 50 179-234 167-216 (509)
329 PLN02702 L-idonate 5-dehydroge 36.8 1.8E+02 0.004 27.5 8.3 48 178-231 184-231 (364)
330 PRK04523 N-acetylornithine car 36.6 1.1E+02 0.0024 29.8 6.7 25 186-210 185-210 (335)
331 PRK08945 putative oxoacyl-(acy 36.6 3E+02 0.0064 24.2 10.5 32 178-209 14-45 (247)
332 cd01015 CSHase N-carbamoylsarc 36.6 1.7E+02 0.0036 25.2 7.4 59 172-230 110-172 (179)
333 PRK08339 short chain dehydroge 36.4 2.9E+02 0.0063 24.9 9.3 31 178-208 10-40 (263)
334 PRK06953 short chain dehydroge 36.3 2.7E+02 0.0058 24.2 8.8 51 178-234 3-53 (222)
335 PF13738 Pyr_redox_3: Pyridine 36.1 49 0.0011 28.3 3.9 27 183-209 3-30 (203)
336 PF01494 FAD_binding_3: FAD bi 36.0 49 0.0011 30.5 4.1 29 181-209 5-33 (356)
337 COG1648 CysG Siroheme synthase 35.9 3.3E+02 0.0073 24.6 9.6 31 180-210 15-45 (210)
338 PF09094 DUF1925: Domain of un 35.8 24 0.00051 27.5 1.6 25 74-98 51-76 (80)
339 TIGR01292 TRX_reduct thioredox 35.5 1.4E+02 0.003 27.0 7.1 51 180-230 144-195 (300)
340 PF07279 DUF1442: Protein of u 35.5 1.7E+02 0.0038 26.9 7.4 56 170-227 34-94 (218)
341 PRK06841 short chain dehydroge 35.4 3.1E+02 0.0068 24.1 10.0 32 177-208 16-47 (255)
342 cd05288 PGDH Prostaglandin deh 35.3 2.6E+02 0.0057 25.6 9.0 47 177-229 147-194 (329)
343 PRK08267 short chain dehydroge 35.2 3.2E+02 0.007 24.2 9.9 31 178-208 3-33 (260)
344 PRK12746 short chain dehydroge 35.0 3.2E+02 0.0068 24.1 10.7 58 177-235 7-64 (254)
345 PF12831 FAD_oxidored: FAD dep 35.0 45 0.00098 33.1 3.9 30 181-210 3-32 (428)
346 PRK06101 short chain dehydroge 34.8 2.1E+02 0.0046 25.2 8.0 31 178-208 3-33 (240)
347 PRK09754 phenylpropionate diox 34.8 2.6E+02 0.0055 27.2 9.1 30 181-210 148-177 (396)
348 TIGR00658 orni_carb_tr ornithi 34.7 1.4E+02 0.0031 28.5 7.1 26 186-211 158-183 (304)
349 PF13450 NAD_binding_8: NAD(P) 34.7 58 0.0013 23.7 3.5 26 184-209 3-28 (68)
350 PRK05562 precorrin-2 dehydroge 34.7 2.6E+02 0.0055 25.7 8.5 32 180-211 28-59 (223)
351 TIGR03845 sulfopyru_alph sulfo 34.7 2.9E+02 0.0064 23.6 10.8 94 161-260 44-150 (157)
352 COG1063 Tdh Threonine dehydrog 34.3 1.8E+02 0.0039 28.1 7.9 51 179-234 171-222 (350)
353 PRK12858 tagatose 1,6-diphosph 34.3 4.5E+02 0.0098 25.7 11.6 63 143-205 83-161 (340)
354 PRK08594 enoyl-(acyl carrier p 34.2 3.5E+02 0.0076 24.3 9.4 72 178-253 9-84 (257)
355 cd05282 ETR_like 2-enoyl thioe 33.8 1.3E+02 0.0028 27.4 6.6 33 177-209 140-172 (323)
356 PRK05855 short chain dehydroge 33.6 4E+02 0.0087 26.6 10.6 74 177-253 316-389 (582)
357 PRK06718 precorrin-2 dehydroge 33.5 2.3E+02 0.0049 25.3 7.9 29 182-210 15-43 (202)
358 PRK09126 hypothetical protein; 33.5 51 0.0011 31.7 3.9 27 181-207 7-33 (392)
359 PRK06179 short chain dehydroge 33.5 3.1E+02 0.0067 24.5 8.9 32 178-209 6-37 (270)
360 PRK05396 tdh L-threonine 3-deh 33.4 1.4E+02 0.003 27.9 6.8 49 177-231 165-213 (341)
361 TIGR01289 LPOR light-dependent 33.4 4.1E+02 0.0088 24.8 10.2 71 178-251 5-76 (314)
362 TIGR02823 oxido_YhdH putative 33.2 1.9E+02 0.004 26.6 7.6 45 178-228 148-192 (323)
363 PRK08192 aspartate carbamoyltr 33.2 1.7E+02 0.0037 28.5 7.5 51 181-232 163-217 (338)
364 PRK00768 nadE NAD synthetase; 33.1 3.3E+02 0.0073 25.7 9.2 66 169-234 31-109 (268)
365 PF00890 FAD_binding_2: FAD bi 32.9 53 0.0012 31.9 4.0 28 182-209 4-31 (417)
366 cd08250 Mgc45594_like Mgc45594 32.9 1.4E+02 0.003 27.6 6.6 48 177-230 141-188 (329)
367 PRK04965 NADH:flavorubredoxin 32.8 2.9E+02 0.0063 26.5 9.1 50 181-230 145-201 (377)
368 cd08299 alcohol_DH_class_I_II_ 32.8 2E+02 0.0043 27.7 7.9 47 177-229 192-238 (373)
369 cd05285 sorbitol_DH Sorbitol d 32.6 2.3E+02 0.0049 26.5 8.1 49 177-231 164-212 (343)
370 PF01134 GIDA: Glucose inhibit 32.5 55 0.0012 32.7 4.0 26 182-207 4-29 (392)
371 KOG0785 Isocitrate dehydrogena 32.5 1.6E+02 0.0034 28.9 6.8 114 60-179 60-199 (365)
372 PRK12562 ornithine carbamoyltr 32.0 1.7E+02 0.0038 28.5 7.3 31 181-211 160-192 (334)
373 cd08262 Zn_ADH8 Alcohol dehydr 31.9 2.5E+02 0.0054 26.1 8.2 47 177-229 163-209 (341)
374 cd08253 zeta_crystallin Zeta-c 31.9 3.7E+02 0.0081 24.0 9.9 48 177-230 146-193 (325)
375 COG0399 WecE Predicted pyridox 31.9 1.8E+02 0.0039 28.9 7.4 64 171-238 44-107 (374)
376 PRK06847 hypothetical protein; 31.8 68 0.0015 30.5 4.5 27 181-207 8-34 (375)
377 cd08290 ETR 2-enoyl thioester 31.7 2.8E+02 0.0061 25.7 8.6 53 177-231 148-200 (341)
378 PTZ00317 NADP-dependent malic 31.7 2.3E+02 0.0051 29.7 8.5 87 107-201 227-325 (559)
379 PRK13982 bifunctional SbtC-lik 31.5 87 0.0019 32.1 5.3 42 184-234 280-321 (475)
380 PRK05476 S-adenosyl-L-homocyst 31.4 1.9E+02 0.0041 29.2 7.7 28 179-206 214-241 (425)
381 PRK12742 oxidoreductase; Provi 31.3 3.5E+02 0.0076 23.4 9.4 53 177-234 7-60 (237)
382 PRK03515 ornithine carbamoyltr 31.2 1.5E+02 0.0033 28.9 6.8 32 180-211 159-192 (336)
383 PRK12748 3-ketoacyl-(acyl-carr 31.2 3.7E+02 0.0081 23.8 10.6 75 178-253 7-92 (256)
384 PLN02263 serine decarboxylase 31.1 4.9E+02 0.011 26.7 10.6 53 179-235 155-208 (470)
385 PF13478 XdhC_C: XdhC Rossmann 30.9 54 0.0012 27.6 3.2 29 182-210 3-31 (136)
386 TIGR00692 tdh L-threonine 3-de 30.9 3.1E+02 0.0067 25.6 8.8 48 177-230 163-210 (340)
387 TIGR00715 precor6x_red precorr 30.8 2.1E+02 0.0045 26.8 7.4 32 178-210 2-33 (256)
388 TIGR01377 soxA_mon sarcosine o 30.8 64 0.0014 30.7 4.1 27 182-208 5-31 (380)
389 cd08282 PFDH_like Pseudomonas 30.6 2.3E+02 0.005 27.1 8.0 47 177-229 178-224 (375)
390 PRK02102 ornithine carbamoyltr 30.5 1.8E+02 0.004 28.3 7.2 30 182-211 160-191 (331)
391 PRK06914 short chain dehydroge 30.5 4E+02 0.0087 23.9 10.5 32 178-209 5-36 (280)
392 cd08267 MDR1 Medium chain dehy 30.4 2.2E+02 0.0049 25.6 7.5 45 177-228 145-189 (319)
393 TIGR03385 CoA_CoA_reduc CoA-di 30.4 2.9E+02 0.0062 27.0 8.7 53 177-230 138-197 (427)
394 PRK01438 murD UDP-N-acetylmura 30.2 2.1E+02 0.0046 28.6 7.9 49 181-230 20-68 (480)
395 PLN02527 aspartate carbamoyltr 30.2 1.9E+02 0.0041 27.8 7.1 25 187-211 164-189 (306)
396 PLN02583 cinnamoyl-CoA reducta 30.1 3.9E+02 0.0084 24.7 9.2 33 177-209 7-39 (297)
397 PLN03049 pyridoxine (pyridoxam 30.1 2.9E+02 0.0062 28.2 8.7 53 177-229 60-116 (462)
398 PRK12747 short chain dehydroge 29.8 3.9E+02 0.0085 23.5 10.1 56 178-234 6-61 (252)
399 PRK11658 UDP-4-amino-4-deoxy-L 29.8 2.2E+02 0.0047 27.6 7.7 12 222-233 90-101 (379)
400 TIGR01064 pyruv_kin pyruvate k 29.6 6.2E+02 0.014 25.8 11.3 85 159-251 357-442 (473)
401 cd08261 Zn_ADH7 Alcohol dehydr 29.4 3.7E+02 0.0081 24.9 9.0 45 177-228 161-205 (337)
402 PRK06719 precorrin-2 dehydroge 29.4 2.2E+02 0.0048 24.3 6.8 31 181-211 17-47 (157)
403 PF02540 NAD_synthase: NAD syn 29.2 4E+02 0.0087 24.5 9.0 65 171-235 13-82 (242)
404 PRK02255 putrescine carbamoylt 29.1 2.1E+02 0.0045 28.0 7.3 29 183-211 160-189 (338)
405 PRK07818 dihydrolipoamide dehy 29.0 1.8E+02 0.004 28.9 7.2 53 177-230 173-231 (466)
406 cd08235 iditol_2_DH_like L-idi 29.0 4.7E+02 0.01 24.2 9.7 47 177-229 167-213 (343)
407 PRK06057 short chain dehydroge 29.0 4.1E+02 0.0089 23.5 10.3 32 177-208 8-39 (255)
408 PRK08849 2-octaprenyl-3-methyl 28.9 69 0.0015 30.9 4.0 28 181-208 7-34 (384)
409 TIGR02032 GG-red-SF geranylger 28.9 77 0.0017 28.5 4.1 28 182-209 5-32 (295)
410 PRK06753 hypothetical protein; 28.7 71 0.0015 30.4 4.0 27 181-207 4-30 (373)
411 TIGR01988 Ubi-OHases Ubiquinon 28.6 69 0.0015 30.3 3.9 28 182-209 4-31 (385)
412 cd08232 idonate-5-DH L-idonate 28.6 2.2E+02 0.0048 26.4 7.3 46 177-228 167-212 (339)
413 cd01013 isochorismatase Isocho 28.6 2.7E+02 0.0059 24.6 7.5 61 171-231 137-201 (203)
414 cd00288 Pyruvate_Kinase Pyruva 28.5 5.6E+02 0.012 26.3 10.5 86 159-252 359-449 (480)
415 PF09338 Gly_reductase: Glycin 28.4 1.8E+02 0.0039 29.5 6.8 58 152-209 280-341 (428)
416 PRK10669 putative cation:proto 28.4 1.8E+02 0.004 29.9 7.2 50 180-235 420-469 (558)
417 cd05279 Zn_ADH1 Liver alcohol 28.3 2.2E+02 0.0048 27.1 7.4 46 177-228 185-230 (365)
418 PRK06125 short chain dehydroge 28.2 4.2E+02 0.0092 23.5 9.4 32 177-208 8-39 (259)
419 cd05286 QOR2 Quinone oxidoredu 28.2 2.7E+02 0.0059 24.8 7.6 48 178-231 139-186 (320)
420 cd08236 sugar_DH NAD(P)-depend 28.2 2.3E+02 0.0051 26.3 7.4 45 177-228 161-206 (343)
421 TIGR03128 RuMP_HxlA 3-hexulose 28.1 4E+02 0.0087 23.2 9.3 67 167-235 68-135 (206)
422 TIGR02379 ECA_wecE TDP-4-keto- 28.1 1.6E+02 0.0035 28.7 6.4 58 174-235 44-101 (376)
423 COG1433 Uncharacterized conser 28.0 2.8E+02 0.0061 23.1 6.9 51 189-246 54-104 (121)
424 PRK13529 malate dehydrogenase; 28.0 2.7E+02 0.0058 29.3 8.2 87 107-201 225-323 (563)
425 PRK10083 putative oxidoreducta 27.8 2.8E+02 0.006 25.7 7.8 48 178-231 163-211 (339)
426 PTZ00222 60S ribosomal protein 27.8 5.3E+02 0.012 24.5 9.6 43 165-207 137-182 (263)
427 PRK07494 2-octaprenyl-6-methox 27.7 69 0.0015 30.7 3.8 29 181-209 11-39 (388)
428 PF02254 TrkA_N: TrkA-N domain 27.5 2.3E+02 0.0049 22.0 6.2 56 174-233 61-116 (116)
429 PRK07825 short chain dehydroge 27.5 4.5E+02 0.0097 23.5 10.7 32 177-208 6-37 (273)
430 cd06353 PBP1_BmpA_Med_like Per 27.5 4.8E+02 0.01 23.8 9.5 66 190-261 21-86 (258)
431 PRK11749 dihydropyrimidine deh 27.4 2.2E+02 0.0048 28.3 7.4 52 180-231 276-330 (457)
432 PRK09072 short chain dehydroge 27.3 4.5E+02 0.0097 23.4 10.3 56 177-235 6-61 (263)
433 cd08234 threonine_DH_like L-th 27.2 3.4E+02 0.0074 25.0 8.3 46 177-228 161-206 (334)
434 COG2130 Putative NADP-dependen 27.1 3.8E+02 0.0082 26.3 8.4 61 177-244 152-213 (340)
435 cd08286 FDH_like_ADH2 formalde 27.0 2.7E+02 0.0059 25.9 7.6 46 177-229 168-214 (345)
436 PRK06720 hypothetical protein; 26.9 4.1E+02 0.0088 22.8 10.7 56 178-235 18-73 (169)
437 PRK01713 ornithine carbamoyltr 26.8 1.8E+02 0.0039 28.3 6.4 31 181-211 160-192 (334)
438 cd08279 Zn_ADH_class_III Class 26.6 5.3E+02 0.011 24.4 9.6 47 177-229 184-230 (363)
439 cd08255 2-desacetyl-2-hydroxye 26.6 2.2E+02 0.0048 25.5 6.7 43 177-226 99-142 (277)
440 PRK06019 phosphoribosylaminoim 26.6 1.1E+02 0.0024 29.8 4.9 29 182-210 7-35 (372)
441 PRK06484 short chain dehydroge 26.5 5.3E+02 0.011 25.7 10.0 71 177-253 6-76 (520)
442 PRK12266 glpD glycerol-3-phosp 26.5 80 0.0017 32.2 4.1 27 182-208 11-37 (508)
443 PRK08690 enoyl-(acyl carrier p 26.4 4.8E+02 0.01 23.4 9.7 30 178-207 8-39 (261)
444 PLN00141 Tic62-NAD(P)-related 26.3 3.1E+02 0.0067 24.5 7.6 33 176-208 17-49 (251)
445 PRK07538 hypothetical protein; 26.3 80 0.0017 30.8 3.9 27 181-207 4-30 (413)
446 COG2205 KdpD Osmosensitive K+ 26.3 4.4E+02 0.0095 29.2 9.5 82 177-264 249-343 (890)
447 PRK11914 diacylglycerol kinase 26.2 5.4E+02 0.012 24.0 9.5 59 152-210 14-74 (306)
448 PRK08703 short chain dehydroge 26.0 4.4E+02 0.0096 22.9 10.0 33 177-209 7-39 (239)
449 PF00702 Hydrolase: haloacid d 26.0 1.2E+02 0.0026 25.8 4.7 66 164-235 132-204 (215)
450 cd03786 GT1_UDP-GlcNAc_2-Epime 25.9 2.8E+02 0.0061 25.9 7.5 61 145-206 57-118 (363)
451 cd05281 TDH Threonine dehydrog 25.9 2.3E+02 0.005 26.4 6.9 48 177-230 165-212 (341)
452 PRK07577 short chain dehydroge 25.9 4.3E+02 0.0094 22.8 10.0 33 178-210 5-37 (234)
453 cd08263 Zn_ADH10 Alcohol dehyd 25.8 4.5E+02 0.0097 24.9 9.0 46 177-228 189-234 (367)
454 PF02826 2-Hacid_dh_C: D-isome 25.8 1.4E+02 0.003 25.8 5.0 33 179-211 38-70 (178)
455 PRK08535 translation initiatio 25.5 2.3E+02 0.0051 27.1 6.9 48 162-209 131-180 (310)
456 PRK06115 dihydrolipoamide dehy 25.5 2.3E+02 0.0051 28.3 7.2 50 181-230 178-233 (466)
457 cd08241 QOR1 Quinone oxidoredu 25.5 4.8E+02 0.011 23.2 9.3 31 178-208 142-172 (323)
458 PRK08306 dipicolinate synthase 25.5 2.2E+02 0.0047 27.0 6.6 45 180-230 155-199 (296)
459 PRK08850 2-octaprenyl-6-methox 25.5 87 0.0019 30.4 4.0 28 181-208 8-35 (405)
460 PHA02554 13 neck protein; Prov 25.4 88 0.0019 30.2 3.8 38 215-252 9-46 (311)
461 PRK08013 oxidoreductase; Provi 25.3 86 0.0019 30.5 4.0 28 181-208 7-34 (400)
462 PRK07533 enoyl-(acyl carrier p 25.1 5E+02 0.011 23.2 10.0 31 178-208 12-44 (258)
463 PF00764 Arginosuc_synth: Argi 25.0 1.4E+02 0.0031 29.8 5.4 56 180-235 1-60 (388)
464 PRK12778 putative bifunctional 25.0 2E+02 0.0044 30.8 7.0 52 180-231 573-627 (752)
465 PRK05868 hypothetical protein; 25.0 89 0.0019 30.2 4.0 26 182-207 6-31 (372)
466 PLN02686 cinnamoyl-CoA reducta 24.9 4.9E+02 0.011 25.0 9.1 32 177-208 54-85 (367)
467 PRK14805 ornithine carbamoyltr 24.7 2.5E+02 0.0054 26.9 6.9 29 183-211 153-182 (302)
468 TIGR00936 ahcY adenosylhomocys 24.6 2E+02 0.0043 28.9 6.4 28 179-206 197-224 (406)
469 PRK12770 putative glutamate sy 24.5 2.3E+02 0.005 27.0 6.7 52 180-231 175-229 (352)
470 TIGR01292 TRX_reduct thioredox 24.5 98 0.0021 28.0 4.0 27 182-208 5-31 (300)
471 PRK00861 putative lipid kinase 24.4 4.9E+02 0.011 24.2 8.8 82 153-236 9-91 (300)
472 COG0132 BioD Dethiobiotin synt 24.3 3.7E+02 0.0079 24.8 7.6 71 159-230 91-168 (223)
473 PRK07060 short chain dehydroge 24.3 4.7E+02 0.01 22.7 9.9 52 177-234 10-62 (245)
474 PRK06196 oxidoreductase; Provi 24.3 5.7E+02 0.012 23.7 10.2 32 177-208 27-58 (315)
475 PRK08274 tricarballylate dehyd 24.3 94 0.002 30.9 4.1 26 182-207 9-34 (466)
476 PRK06617 2-octaprenyl-6-methox 24.1 90 0.0019 30.0 3.8 27 181-207 5-31 (374)
477 PRK07069 short chain dehydroge 24.1 4.8E+02 0.01 22.7 9.5 31 179-209 2-32 (251)
478 PRK05192 tRNA uridine 5-carbox 24.1 89 0.0019 33.2 4.0 29 181-209 8-36 (618)
479 COG1184 GCD2 Translation initi 24.0 1.9E+02 0.0041 28.0 5.8 22 186-207 156-177 (301)
480 PF01266 DAO: FAD dependent ox 24.0 1.1E+02 0.0024 28.1 4.3 28 182-209 4-31 (358)
481 PLN00015 protochlorophyllide r 24.0 5.2E+02 0.011 23.9 8.9 27 181-207 2-29 (308)
482 PRK06940 short chain dehydroge 24.0 5.5E+02 0.012 23.3 10.1 67 178-249 4-70 (275)
483 PF03162 Y_phosphatase2: Tyros 24.0 4.7E+02 0.01 22.5 8.7 61 190-253 23-89 (164)
484 COG1107 Archaea-specific RecJ- 23.9 1.8E+02 0.0038 31.0 5.9 40 196-235 411-452 (715)
485 PRK07236 hypothetical protein; 23.9 95 0.0021 29.9 3.9 29 181-209 10-38 (386)
486 PRK06484 short chain dehydroge 23.9 7.3E+02 0.016 24.7 10.8 69 178-253 271-340 (520)
487 PRK12809 putative oxidoreducta 23.9 2.3E+02 0.005 29.8 7.1 53 180-232 313-380 (639)
488 PLN03129 NADP-dependent malic 23.8 3.5E+02 0.0076 28.6 8.1 87 108-201 251-350 (581)
489 cd08248 RTN4I1 Human Reticulon 23.8 4.3E+02 0.0093 24.4 8.3 45 177-228 164-208 (350)
490 TIGR02824 quinone_pig3 putativ 23.7 2.7E+02 0.0058 25.0 6.7 32 177-208 141-172 (325)
491 PRK11101 glpA sn-glycerol-3-ph 23.7 95 0.0021 32.0 4.1 27 182-208 11-37 (546)
492 KOG1201 Hydroxysteroid 17-beta 23.7 6.7E+02 0.015 24.3 11.6 74 177-255 39-113 (300)
493 PRK08163 salicylate hydroxylas 23.7 98 0.0021 29.7 4.0 28 181-208 8-35 (396)
494 COG0654 UbiH 2-polyprenyl-6-me 23.6 96 0.0021 30.1 3.9 48 180-227 5-60 (387)
495 TIGR00215 lpxB lipid-A-disacch 23.5 1.9E+02 0.0042 28.2 6.0 36 173-209 87-122 (385)
496 cd08249 enoyl_reductase_like e 23.4 4.5E+02 0.0097 24.6 8.4 47 177-230 156-202 (339)
497 PRK12898 secA preprotein trans 23.4 3.4E+02 0.0075 29.1 8.2 75 155-235 124-201 (656)
498 TIGR02853 spore_dpaA dipicolin 23.3 2.5E+02 0.0054 26.5 6.6 29 180-208 154-182 (287)
499 PRK07023 short chain dehydroge 23.2 5.1E+02 0.011 22.6 9.2 51 178-235 3-53 (243)
500 PLN02464 glycerol-3-phosphate 23.2 97 0.0021 32.7 4.1 26 182-207 76-101 (627)
No 1
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-59 Score=437.49 Aligned_cols=221 Identities=70% Similarity=1.091 Sum_probs=216.8
Q ss_pred CCCCCCCccCCCccccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEE
Q 021613 69 RPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYL 148 (310)
Q Consensus 69 ~~~~~~~~g~~GG~~vPe~l~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~l 148 (310)
.||.+|+||.|||+||||+||+++++|+++|.+...|++|++|+...+++|+||||||+.+++|++.+ +++|||
T Consensus 2 ~~~~~g~fG~fGG~yVpE~Lmpal~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRptpLy~a~~Lt~~~------gakiyL 75 (396)
T COG0133 2 YPDEKGYFGEFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFAERLTEHL------GAKIYL 75 (396)
T ss_pred CCccCCcccccCCEechHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhh------CceEEE
Confidence 58899999999999999999999999999999999999999999999999999999999999999998 799999
Q ss_pred EecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCE
Q 021613 149 KREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (310)
Q Consensus 149 K~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~ 228 (310)
||||+||||+||+++++.+++.|+++|++++|.++++|+||+|.|.+|+++|++|+|||...+++|+..|+.+|+.+||+
T Consensus 76 KREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~ 155 (396)
T COG0133 76 KREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAE 155 (396)
T ss_pred ehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCChhhhhcccceeccchHHHHHHHHHHHHHhCC
Q 021613 229 VRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWF 300 (310)
Q Consensus 229 Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~~~iv~d~~~v~vGT~G~e~gi~q~l~~~~~ 300 (310)
|+.|..++.+++||+++|+++|+.+++++||++|++.+|||||+||+|||.| +|.|+. .|.++..+.
T Consensus 156 V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~v----IG~E~k-~Qile~egr 222 (396)
T COG0133 156 VVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSV----IGEEAK-AQILEKEGR 222 (396)
T ss_pred EEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHH----HhHHHH-HHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999 999999 999988774
No 2
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=5.6e-53 Score=412.94 Aligned_cols=236 Identities=64% Similarity=0.965 Sum_probs=214.9
Q ss_pred CCCCCCCCccCCCccccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEE
Q 021613 68 QRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIY 147 (310)
Q Consensus 68 ~~~~~~~~~g~~GG~~vPe~l~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~ 147 (310)
+.||++|+||.|||+||||+|++.++||+++|.+.+.|++|++|++..+++|+|+||||+++++|++.+ ++.+||
T Consensus 3 ~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~grpTPL~~~~~Ls~~~-----gg~~Iy 77 (397)
T PRK04346 3 TLPDENGYFGEFGGRFVPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNYVGRPTPLYFAERLSEHL-----GGAKIY 77 (397)
T ss_pred CCCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCceEhHHHHHHc-----CCCeEE
Confidence 478999999999999999999999999999999999999999999999999999999999999999988 378999
Q ss_pred EEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCC
Q 021613 148 LKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (310)
Q Consensus 148 lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA 227 (310)
+|+|++|||||||+|+++.+++.|+++|++++|+++|+||||+|+|++|+++|++|+||||+.+.+++..|+.+|+.+||
T Consensus 78 lK~EdlnptGS~K~r~al~~~l~A~~~Gk~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA 157 (397)
T PRK04346 78 LKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGA 157 (397)
T ss_pred EEECCCCCccchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCC
Confidence 99999999999999999999999999999988888999999999999999999999999999876667789999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCChhhhh----------------------cccceeccchH
Q 021613 228 EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMV----------------------RDFHATSIGEM 285 (310)
Q Consensus 228 ~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~~~iv----------------------~d~~~v~vGT~ 285 (310)
+|+.|+.+..+++++++++.++|+++.++++|++++..++||||.+| +|++++++|+|
T Consensus 158 ~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgG 237 (397)
T PRK04346 158 EVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGG 237 (397)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCcc
Confidence 99999976678999999999999988788899999999999998542 46677889999
Q ss_pred HHHHHHHHHHHHhCC-ccccccCc
Q 021613 286 GWETRCADCMRWWWF-KCHGSLPR 308 (310)
Q Consensus 286 G~e~gi~q~l~~~~~-~~~~~~Pr 308 (310)
|+.+|+...|.+... .++++.|.
T Consensus 238 g~~~Gi~~~f~~~~~v~iigVE~~ 261 (397)
T PRK04346 238 SNAIGIFHPFIDDESVRLIGVEAA 261 (397)
T ss_pred HhHHHHHHHHhhCCCCeEEEEecC
Confidence 999999888866322 66666553
No 3
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=2.1e-52 Score=409.95 Aligned_cols=249 Identities=76% Similarity=1.134 Sum_probs=222.2
Q ss_pred cCCCCCCCCCCCCCCCccCCCccccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCC
Q 021613 60 KESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRP 139 (310)
Q Consensus 60 ~~~~~~~~~~~~~~~~~g~~GG~~vPe~l~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~ 139 (310)
...+|+....||.+|+||.|||+||||+|++.++||+++|.+.+.|++|++|+++++++++|+||||+++++|++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~vGr~TPL~~~~~Ls~~~g~~ 82 (410)
T PLN02618 3 PGSDPTGFQRPDSFGRFGKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYVGRETPLYFAERLTEHYKRA 82 (410)
T ss_pred CCCCchhccCCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHhcCCCCceeEhhhHHHHhccc
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999987311
Q ss_pred CCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHH
Q 021613 140 NGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNV 219 (310)
Q Consensus 140 ~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv 219 (310)
+++|.+||+|+|++|||||||+|+++++++.|+++|++++|+++|+||||+|+|++|+++|++|+||||+.+.+++..|+
T Consensus 83 ~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~~~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv 162 (410)
T PLN02618 83 DGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNV 162 (410)
T ss_pred cCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhH
Confidence 22368999999999999999999999999999999998888888999999999999999999999999998766678899
Q ss_pred HHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCChhhh----------------------hccc
Q 021613 220 FRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMM----------------------VRDF 277 (310)
Q Consensus 220 ~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~~~i----------------------v~d~ 277 (310)
.+|+.|||+|+.++.+.++++++.+++.++|++++++++|++++..++|||+.+ .+|.
T Consensus 163 ~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~ 242 (410)
T PLN02618 163 FRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDV 242 (410)
T ss_pred HHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCE
Confidence 999999999999987557899998889999999888899999999999998742 2566
Q ss_pred ceeccchHHHHHHHHHHHHHhC-CccccccCc
Q 021613 278 HATSIGEMGWETRCADCMRWWW-FKCHGSLPR 308 (310)
Q Consensus 278 ~~v~vGT~G~e~gi~q~l~~~~-~~~~~~~Pr 308 (310)
+++++|+||+.+|+...|++.. ..++++.|.
T Consensus 243 VV~~VGgGg~~~Gi~~~f~~~~~v~ligVEa~ 274 (410)
T PLN02618 243 LVACVGGGSNAMGLFHEFIDDEDVRLIGVEAA 274 (410)
T ss_pred EEEEeCchHHHHHHHHHHHhCCCceEEEEEeC
Confidence 7788999999999999997532 266666553
No 4
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.6e-51 Score=403.25 Aligned_cols=238 Identities=55% Similarity=0.838 Sum_probs=215.7
Q ss_pred CCCCCCCCCCCccCCCccccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCC
Q 021613 65 APWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGP 144 (310)
Q Consensus 65 ~~~~~~~~~~~~g~~GG~~vPe~l~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~ 144 (310)
+....||++|+||.|||+||||+|++.++||+++|.+.+.|++|++|++..+++|+|+||||+++++|++.+ ++.
T Consensus 4 ~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~g~pTPL~~~~~Ls~~~-----Gg~ 78 (402)
T PRK13028 4 YLKSMPDADGFFGEYGGQFVPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHYVGRPTPLYHAKRLSEEL-----GGA 78 (402)
T ss_pred ccccCCCCCCCcCCcCCEeCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCCeeehHHhHhhc-----CCC
Confidence 445679999999999999999999999999999999999999999999999999999999999999999987 368
Q ss_pred eEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHH
Q 021613 145 HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL 224 (310)
Q Consensus 145 ~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~ 224 (310)
+||+|+|++|||||||+|+++++++.|+++|++++|+++|+||||+|+|++|+++|++|+||||+.+.+++..|+.+|+.
T Consensus 79 ~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~ 158 (402)
T PRK13028 79 QIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKL 158 (402)
T ss_pred eEEEEECCCCCCcchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999876666789999999
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCChhhhh----------------------cccceecc
Q 021613 225 LGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMV----------------------RDFHATSI 282 (310)
Q Consensus 225 ~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~~~iv----------------------~d~~~v~v 282 (310)
+||+|+.++.+.+++++++++++++|.++.++.+|++++..++||||.++ +|++++++
T Consensus 159 ~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~V 238 (402)
T PRK13028 159 LGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACV 238 (402)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEc
Confidence 99999999976568999999999999988778899999999999997542 46677889
Q ss_pred chHHHHHHHHHHHHHhC-CccccccC
Q 021613 283 GEMGWETRCADCMRWWW-FKCHGSLP 307 (310)
Q Consensus 283 GT~G~e~gi~q~l~~~~-~~~~~~~P 307 (310)
|+||+.+|+..+|++.. ..++++.|
T Consensus 239 GgGg~~~Gi~~~f~~~~~v~iigVE~ 264 (402)
T PRK13028 239 GGGSNAIGLFSAFLDDESVRLVGVEP 264 (402)
T ss_pred CchHHHHHHHHHHHhCCCceEEEEec
Confidence 99999999999998642 26666665
No 5
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-50 Score=375.92 Aligned_cols=280 Identities=54% Similarity=0.796 Sum_probs=244.4
Q ss_pred cccCCcccccccCcccccccCCCCCCccccccccC---ccccccceeeeecCCccccCcCcCCCCCCCCCCCCCCCccCC
Q 021613 3 VATGSSSCCKLAKPCAFTTSNSSQSPFKLKKFTAS---PAKSTSIRCTIARDPVVPMEAKKESDPAPWQRPDVFGRFGRF 79 (310)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (310)
|+-+.++|-++ |-.|....+..-.|...-+.. .++..+..|++++.+...|. -+.++..++.| .+||.|
T Consensus 8 v~~~v~~~~~~---s~lt~~rk~~~~~k~~~~~slr~~~~~~~t~~~sva~~p~~~~~--l~~d~~~~~~P---~r~gkf 79 (477)
T KOG1395|consen 8 VSPQVGDCQGF---SDLTLKRKSNQATKYSNGSSLRVKAALRFTHNKSVAEIPPQWYN--LVADLSVKPPP---PRFGKF 79 (477)
T ss_pred cccCCcccccc---CCcccccChhhhcccccCCccccccccccccCceeeeCCHHHHh--ccCchhhcCCC---cccccc
Confidence 55566666543 444554443333332222222 23347889999999998773 45566656664 899999
Q ss_pred CccccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCCh
Q 021613 80 GGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAH 159 (310)
Q Consensus 80 GG~~vPe~l~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSf 159 (310)
||.|+||.|+..+.||+..|.....|++||+|+.++.+ |+||||||+++++|.+++++ |++||+|+||+||||||
T Consensus 80 gg~yvPE~L~h~l~ELek~f~~~~~d~df~ee~~eiy~-y~gRpspL~~AkRLte~~q~----ga~IylKrEdlnh~GsH 154 (477)
T KOG1395|consen 80 GGPYVPEALAHCLPELEKQFYTAERDEDFWEEFLEIYK-YLGRPSPLIRAKRLTEHCQT----GARIYLKREDLNHTGSH 154 (477)
T ss_pred CCccChHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HcCCCchhHHHHHHHHHhCC----CCEEEEEecCCCccccC
Confidence 99999999999999999999999999999999999876 99999999999999999953 89999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCH
Q 021613 160 KINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATL 239 (310)
Q Consensus 160 K~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~ 239 (310)
|+++++.+++.|+++|++++|.++++|+||+|+|.+|+++|++|+|+|..++.+++..|+.+||.+||+|+.+.++..++
T Consensus 155 KiNnav~QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tL 234 (477)
T KOG1395|consen 155 KINNAVAQALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTL 234 (477)
T ss_pred CcccHHHHHHHHHHhcccceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHccCCceeecCCCCCCCChhhhhcccceeccchHHHHHHHHHHHHHhCC
Q 021613 240 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWF 300 (310)
Q Consensus 240 ~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~~~iv~d~~~v~vGT~G~e~gi~q~l~~~~~ 300 (310)
+|+.+++.+.|+.+.+.++|++|+..++||||.+|++|+.+ +|.|.. .|.++.++.
T Consensus 235 rda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsv----Ig~Et~-~Q~me~~g~ 290 (477)
T KOG1395|consen 235 RDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSV----IGKETK-IQQMEKFGK 290 (477)
T ss_pred hcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHH----HhHHHH-HHHHHHhCC
Confidence 99999999999999999999999999999999999999988 999999 777888775
No 6
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=7.3e-48 Score=395.18 Aligned_cols=234 Identities=56% Similarity=0.870 Sum_probs=211.2
Q ss_pred CCCCCCCccCCCccccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEE
Q 021613 69 RPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYL 148 (310)
Q Consensus 69 ~~~~~~~~g~~GG~~vPe~l~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~l 148 (310)
.||.+|+||.|||+|+||+|+++++||+++|.+.+.|++|++|++..+++|+|+||||+++++|++.+ |.+||+
T Consensus 217 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grpTPL~~~~~Ls~~~------G~~Iyl 290 (610)
T PRK13803 217 LSDPAGRYGTFGGAYVPETLMANLQELQESYTKIIKSNEFQKTFKRLLQNYAGRPTPLTEAKRLSDIY------GARIYL 290 (610)
T ss_pred CCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCcceeHHHHHHhh------CCEEEE
Confidence 56889999999999999999999999999999999999999999999999999999999999999887 789999
Q ss_pred EecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCE
Q 021613 149 KREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (310)
Q Consensus 149 K~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~ 228 (310)
|+|++|||||||+|+++++++.|+++|++++|+++|+||||+|+|++|+++|++|+||||..+.+++..|+.+|+.|||+
T Consensus 291 K~E~lnptGS~K~r~al~~~~~a~~~g~~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~ 370 (610)
T PRK13803 291 KREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGAN 370 (610)
T ss_pred EeCCCCCcccHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCE
Confidence 99999999999999999999999999998888889999999999999999999999999998766677899999999999
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCChhhhh----------------------cccceeccchHH
Q 021613 229 VRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMV----------------------RDFHATSIGEMG 286 (310)
Q Consensus 229 Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~~~iv----------------------~d~~~v~vGT~G 286 (310)
|+.++.+..+++++++++.++|..+.++.+|++++..++||||.++ +|.+++++|+||
T Consensus 371 Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg 450 (610)
T PRK13803 371 VIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGS 450 (610)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCH
Confidence 9999976678999989999999777677899999988889987542 466778899999
Q ss_pred HHHHHHHHHHHhC-CccccccCc
Q 021613 287 WETRCADCMRWWW-FKCHGSLPR 308 (310)
Q Consensus 287 ~e~gi~q~l~~~~-~~~~~~~Pr 308 (310)
+.+|+..+|++.. ..+++..|.
T Consensus 451 ~~~Gi~~~f~~~~~v~iigVE~~ 473 (610)
T PRK13803 451 NAIGIFYHFLDDPSVKLIGVEAG 473 (610)
T ss_pred hHHHHHHHHhhCCCceEEEEecC
Confidence 9999999996532 266665553
No 7
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.5e-47 Score=394.67 Aligned_cols=233 Identities=53% Similarity=0.805 Sum_probs=207.2
Q ss_pred CCCCccCCCccccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchh----hcCCCCCCCeEE
Q 021613 72 VFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEH----YRRPNGGGPHIY 147 (310)
Q Consensus 72 ~~~~~g~~GG~~vPe~l~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~----~~~~~~~g~~I~ 147 (310)
.+||||.|||+||||+|++.++||+++|.+.+.|++|++|++..+++|+|+||||+++++|++. +| ++.+||
T Consensus 275 ~~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~iGrpTPL~~~~~Ls~~l~~~~G----~g~~Iy 350 (695)
T PRK13802 275 QGPYWGQFGGRYVPEALITALDELERVYTQAKADPEFHKELATLNQRYVGRPSPLTEAPRFAERVKEKTG----LDARVF 350 (695)
T ss_pred CCCCcCCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCceeEchhhhhhhHhhcC----CCceEE
Confidence 4699999999999999999999999999999999999999999999999999999999998753 41 247999
Q ss_pred EEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCC
Q 021613 148 LKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (310)
Q Consensus 148 lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA 227 (310)
+|+|++|||||||+|+++++++.++++|++++|+++|+||||+|+|++|+++|++|+||||+.+..++..|+.+|+.|||
T Consensus 351 lK~E~lNpTGS~KdR~Al~~i~~A~~~G~~~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGA 430 (695)
T PRK13802 351 LKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGA 430 (695)
T ss_pred EEEccCCCcCCcHHHHHHHHHHHHHHcCCCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCC
Confidence 99999999999999999999999999999989999999999999999999999999999999765567889999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCChhhh-----------------------hcccceeccch
Q 021613 228 EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMM-----------------------VRDFHATSIGE 284 (310)
Q Consensus 228 ~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~~~i-----------------------v~d~~~v~vGT 284 (310)
+|+.++.+..+++++++++.++|.++.++.+|.+++..++||||.+ .+|++++++|+
T Consensus 431 eVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGg 510 (695)
T PRK13802 431 EVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGG 510 (695)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCc
Confidence 9999996555889998888899998777778888888888998643 24677888999
Q ss_pred HHHHHHHHHHHHHhC-CccccccCc
Q 021613 285 MGWETRCADCMRWWW-FKCHGSLPR 308 (310)
Q Consensus 285 ~G~e~gi~q~l~~~~-~~~~~~~Pr 308 (310)
||+.+|+.++|++.. ..++++.|.
T Consensus 511 Gg~~~Gi~~~f~~~~~vkligVE~~ 535 (695)
T PRK13802 511 GSNAIGVMNAFLDDERVNLYGYEAG 535 (695)
T ss_pred hHHHHHHHHHHHhCCCceEEEEEec
Confidence 999999999997632 266666554
No 8
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.1e-44 Score=353.85 Aligned_cols=229 Identities=59% Similarity=0.880 Sum_probs=198.3
Q ss_pred CCccCCCccccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCC
Q 021613 74 GRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDL 153 (310)
Q Consensus 74 ~~~g~~GG~~vPe~l~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~l 153 (310)
|+||+|||+|+||+++..+++|++.|.+.+.|++|++|+++++..|++++|||+++++|++.+ ++.+||+|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~-----g~~~iy~K~E~~ 75 (385)
T TIGR00263 1 GYFGDFGGQYVPETLMPALEELEAAFEDAKADPAFWAELNELLRNYAGRPTPLTFAPNLTEAL-----GGAKIYLKREDL 75 (385)
T ss_pred CCCCCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCceehHHHHHHh-----CCCeEEEEeCCC
Confidence 789999999999999999999999999999999999999999999999999999999999887 248999999999
Q ss_pred CCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEc
Q 021613 154 NHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (310)
Q Consensus 154 npTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~ 233 (310)
|||||||+|++++++..+++.|++.+|+++|+||||+|+|++|+++|++|+||||+.+.++...|+.+|+.|||+|+.++
T Consensus 76 nptGS~K~R~a~~~~~~a~~~g~~~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~ 155 (385)
T TIGR00263 76 NHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVT 155 (385)
T ss_pred CCCccchHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEEC
Confidence 99999999999999999998898878878999999999999999999999999998643333468899999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCChh------------hh----------hcccceeccchHHHHHHH
Q 021613 234 SGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYP------------MM----------VRDFHATSIGEMGWETRC 291 (310)
Q Consensus 234 ~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~~------------~i----------v~d~~~v~vGT~G~e~gi 291 (310)
...+.++++++++.+.+.+++++.+|+.++..++|||+ |+ .+|++++++|+||+.+|+
T Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv 235 (385)
T TIGR00263 156 SGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGI 235 (385)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHH
Confidence 65456888877777888877677789988877777775 22 246778899999999999
Q ss_pred HHHHHHhCC-ccccccC
Q 021613 292 ADCMRWWWF-KCHGSLP 307 (310)
Q Consensus 292 ~q~l~~~~~-~~~~~~P 307 (310)
.+++.+... .+++..|
T Consensus 236 ~~~~~~~~~~~iigVe~ 252 (385)
T TIGR00263 236 FYAFIDDPSVQLIGVEA 252 (385)
T ss_pred HHHHhhCCCCeEEEEEe
Confidence 987755322 5555544
No 9
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-35 Score=279.82 Aligned_cols=191 Identities=24% Similarity=0.257 Sum_probs=161.4
Q ss_pred chhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHH
Q 021613 87 TLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVG 166 (310)
Q Consensus 87 ~l~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~ 166 (310)
.++.++++|..++. ++++++ ++|||++++.|++++ |.+||+|+|++|++||||.|||+|
T Consensus 4 ~~~~~~~~i~~A~~--------------ri~~~~-~~TPL~~s~~Ls~~~------g~~v~lK~E~lQ~~gSFK~RGA~n 62 (347)
T COG1171 4 LLPVSLADILAAAA--------------RLKGVV-NPTPLQRSPSLSERL------GAEIYLKRENLQPVGSFKIRGAYN 62 (347)
T ss_pred cccccHHHHHHHHH--------------HHhCcc-cCCCcccchhhHHhh------CceEEEeeccCcccccchhhhHHH
Confidence 34568899999888 889988 689999999999998 899999999999999999999999
Q ss_pred HHHHhhhc-CCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHH
Q 021613 167 QALLAKRL-GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSE 245 (310)
Q Consensus 167 ~l~~a~~~-g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~ 245 (310)
.+..+.++ .+.++|+++|+||||+++|++|+++|++++||||.++ +..|++.+|.|||+|+.++. +|+|+...
T Consensus 63 ~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~t---p~~Kv~a~r~~GaeVil~g~---~~dda~~~ 136 (347)
T COG1171 63 KLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETT---PKIKVDATRGYGAEVILHGD---NFDDAYAA 136 (347)
T ss_pred HHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCC---cHHHHHHHHhcCCEEEEECC---CHHHHHHH
Confidence 99988744 5777899999999999999999999999999999998 78999999999999999985 68998888
Q ss_pred HHHHHHHccCCceeecCCCCCCCCh---------hhh------hcccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 246 AIRDWVTNVETTHYILGSVAGPHPY---------PMM------VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 246 a~~~~~~~~~~~~Yi~gs~~~~hp~---------~~i------v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
+.+...++ +..|+.+.+ ||. -|+ .+|.+.+|+|.||+.+|+..+++...+ .+|++.|.
T Consensus 137 a~~~a~~~--G~~~i~pfD---~p~viAGQGTi~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~ 211 (347)
T COG1171 137 AEELAEEE--GLTFVPPFD---DPDVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPE 211 (347)
T ss_pred HHHHHHHc--CCEEeCCCC---CcceeecccHHHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeC
Confidence 77765554 445553322 211 111 147788999999999999999999997 77888886
Q ss_pred c
Q 021613 309 I 309 (310)
Q Consensus 309 ~ 309 (310)
-
T Consensus 212 ~ 212 (347)
T COG1171 212 G 212 (347)
T ss_pred C
Confidence 3
No 10
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=8.4e-34 Score=275.42 Aligned_cols=214 Identities=63% Similarity=0.904 Sum_probs=174.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHH
Q 021613 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (310)
Q Consensus 90 ~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~ 169 (310)
+.+++|++.+.+..-|++|+..++..++++++++|||+++++|++.+ ++.+||+|+|++|||||||+|++++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~l~~l~~~~-----g~~~l~~K~E~~nptgS~K~R~a~~~~~ 75 (365)
T cd06446 1 PALEELEQEFSKERYDPDFPEELRELYKDYVGRPTPLYRAKRLSEYL-----GGAKIYLKREDLNHTGAHKINNALGQAL 75 (365)
T ss_pred ChHHHHHHHHHHhhcCcccHHHHHHHhhccCCCCCCceehHHHHHhh-----CCceEEEEeccCCCccchhHHHHHHHHH
Confidence 36899999999999999999999999999988899999999999877 3689999999999999999999999999
Q ss_pred HhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHH
Q 021613 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (310)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (310)
.+.+.|.+.+|+++|+||||+|+|++|+++|++|+||||....++...|+.+|+.+||+|+.++...++++++..++.+.
T Consensus 76 ~a~~~g~~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~ 155 (365)
T cd06446 76 LAKRMGKKRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRD 155 (365)
T ss_pred HHHHcCCCeEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHH
Confidence 99999988777668999999999999999999999999987543345788899999999999986544567766666666
Q ss_pred HHHccCCceeecCCCCCCCChh------------hh----------hcccceeccchHHHHHHHHHHHHHhC-Ccccccc
Q 021613 250 WVTNVETTHYILGSVAGPHPYP------------MM----------VRDFHATSIGEMGWETRCADCMRWWW-FKCHGSL 306 (310)
Q Consensus 250 ~~~~~~~~~Yi~gs~~~~hp~~------------~i----------v~d~~~v~vGT~G~e~gi~q~l~~~~-~~~~~~~ 306 (310)
+.++.++.+|.+++..++|||+ || .+|++++++||||+.+|+..++++.. ..+|+..
T Consensus 156 ~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~~~~~~vigVe 235 (365)
T cd06446 156 WVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFINDKDVKLIGVE 235 (365)
T ss_pred HHhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHhCCCceEEEEc
Confidence 6665434556555543334443 33 24778889999999999998776533 3666666
Q ss_pred Cc
Q 021613 307 PR 308 (310)
Q Consensus 307 Pr 308 (310)
|.
T Consensus 236 p~ 237 (365)
T cd06446 236 AG 237 (365)
T ss_pred CC
Confidence 54
No 11
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=4.7e-33 Score=273.54 Aligned_cols=190 Identities=24% Similarity=0.265 Sum_probs=155.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHH
Q 021613 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (310)
Q Consensus 90 ~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~ 169 (310)
.++++|.+|+. ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+.+.
T Consensus 2 ~~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~Ls~~~------g~~iylK~E~lqptGSfK~RgA~n~i~ 60 (403)
T PRK08526 2 LELNKIYQAKQ--------------RISGFVN-KTPFAYAPFLSKIS------GAEVYLKKENLQITGAYKIRGAYNKIA 60 (403)
T ss_pred CCHHHHHHHHH--------------HHhCcCC-CCCccchHHHHHHh------CCeEEEEecCCCCCCCCHHHHHHHHHH
Confidence 36788988888 8889995 79999999999887 789999999999999999999999999
Q ss_pred HhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHH
Q 021613 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (310)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (310)
.+.+.++.++|+++|+||||+++|++|+++|++|+||||+.. +..|+++++.|||+|+.++. +++++...+.+.
T Consensus 61 ~l~~~~~~~gVV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~---p~~k~~~~r~~GA~Vv~~g~---~~~~a~~~a~~~ 134 (403)
T PRK08526 61 NLSEEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEAT---PLLKVSGTKALGAEVILKGD---NYDEAYAFALEY 134 (403)
T ss_pred hccHhhcCCEEEEECccHHHHHHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHhCCCEEEEECC---CHHHHHHHHHHH
Confidence 887765556788999999999999999999999999999988 67899999999999999974 688887777664
Q ss_pred HHHccCCceeecCCCCCCC-------Chhhhh-----cccceeccchHHHHHHHHHHHHHhCC--ccccccCcc
Q 021613 250 WVTNVETTHYILGSVAGPH-------PYPMMV-----RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPRI 309 (310)
Q Consensus 250 ~~~~~~~~~Yi~gs~~~~h-------p~~~iv-----~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr~ 309 (310)
..++ +.+|+.+.+ .++ ...|++ +|++++|+|+||+.+|+..++++.++ .+++..|.-
T Consensus 135 a~~~--g~~~v~p~~-~~~~i~G~gtia~EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~ 205 (403)
T PRK08526 135 AKEN--NLTFIHPFE-DEEVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKG 205 (403)
T ss_pred HHhc--CCEeeCCCC-CHHHHhhhHHHHHHHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 3332 345654332 000 112222 46788999999999999999999887 666766643
No 12
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=2.3e-32 Score=261.07 Aligned_cols=187 Identities=24% Similarity=0.251 Sum_probs=152.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHH
Q 021613 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (310)
Q Consensus 91 ~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~ 170 (310)
++++|.+|+. ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++..
T Consensus 2 ~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~i~~ 60 (322)
T PRK07476 2 SLADIYRARR--------------RIAGRVR-RTPLVASASLSARA------GVPVWLKLETLQPTGSFKLRGATNALLS 60 (322)
T ss_pred CHHHHHHHHH--------------HHhCCCC-CCCceechhhHHhh------CCeEEEEEccCCCCCCchHHHHHHHHHh
Confidence 3678888888 8899996 69999999999887 7899999999999999999999999999
Q ss_pred hhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHH
Q 021613 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (310)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (310)
+.+.+++++|+++|+||||+|+|++|+++|++|+||||+.. ++.|+.+|+.|||+|+.++. +++++.+.+.+..
T Consensus 61 a~~~~~~~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~~~ 134 (322)
T PRK07476 61 LSAQERARGVVTASTGNHGRALAYAARALGIRATICMSRLV---PANKVDAIRALGAEVRIVGR---SQDDAQAEVERLV 134 (322)
T ss_pred hhhhhhCCeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHHHH
Confidence 99888877688999999999999999999999999999987 57899999999999999985 4667666655443
Q ss_pred HHccCCceeecCCCCCCC-------Chhhhhc-----ccceeccchHHHHHHHHHHHHHhCC--ccccccC
Q 021613 251 VTNVETTHYILGSVAGPH-------PYPMMVR-----DFHATSIGEMGWETRCADCMRWWWF--KCHGSLP 307 (310)
Q Consensus 251 ~~~~~~~~Yi~gs~~~~h-------p~~~iv~-----d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~P 307 (310)
++ .+.+|++... +++ ...|+++ |++++++||||+.+|+..+|+++++ .+++..|
T Consensus 135 -~~-~g~~~~~~~~-n~~~~~g~~t~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~ 202 (322)
T PRK07476 135 -RE-EGLTMVPPFD-DPRIIAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSM 202 (322)
T ss_pred -Hh-cCCEEeCCCC-CcceeechhHHHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 33 2345664332 111 2234432 4578899999999999999999886 5566555
No 13
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=2.8e-32 Score=268.17 Aligned_cols=190 Identities=19% Similarity=0.173 Sum_probs=154.3
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHH
Q 021613 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (310)
Q Consensus 89 ~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l 168 (310)
++++++|.+|+. +++++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++
T Consensus 6 ~~~~~~i~~a~~--------------~~~~~i~-~TPl~~~~~ls~~~------g~~v~~K~E~~nptGSfK~Rga~~~i 64 (406)
T PRK06382 6 IPSFDDILYAKS--------------YLEGYLN-RTPLIHSTTFGDEY------GGDIYFKLENFQKTGSFKSRGAVFKF 64 (406)
T ss_pred CCCHHHHHHHHH--------------HHhCcCC-CCCeeEhhhhHHHh------CCEEEEEecCCCCCCCCHHHHHHHHH
Confidence 347889988888 8899996 69999999999887 68999999999999999999999999
Q ss_pred HHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHH
Q 021613 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (310)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~ 248 (310)
..+.+.+...+|+++|+||||+|+|++|+++|++|+||||... +..|+++++.|||+|+.++. +++++...+.+
T Consensus 65 ~~~~~~~~~~gvv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~---~~~k~~~~~~~GA~Vv~~~~---~~~~a~~~a~~ 138 (406)
T PRK06382 65 SKLSEDELRNGVITASAGNHAQGVAYAASINGIDAKIVMPEYT---IPQKVNAVEAYGAHVILTGR---DYDEAHRYADK 138 (406)
T ss_pred HhcchhccCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC---HHHHHHHHHHcCCEEEEECC---CHHHHHHHHHH
Confidence 8887766555688999999999999999999999999999987 67899999999999999975 56777665554
Q ss_pred HHHHccCCceeecCCCCCCC-------Chhhhh-----cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 249 DWVTNVETTHYILGSVAGPH-------PYPMMV-----RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 249 ~~~~~~~~~~Yi~gs~~~~h-------p~~~iv-----~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
... + .+.+|+.+.+ .++ ...|++ +|++++|+|+||+.+|+..+++++++ .+++..|.
T Consensus 139 la~-~-~~~~~v~~~~-~~~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~ 209 (406)
T PRK06382 139 IAM-D-ENRTFIEAFN-DRWVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESE 209 (406)
T ss_pred HHH-h-cCCEecCccC-ChHHHHHHHHHHHHHHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 433 3 2445664332 101 122332 46788999999999999999999887 55666664
No 14
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=2.7e-32 Score=267.71 Aligned_cols=189 Identities=23% Similarity=0.266 Sum_probs=155.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHH
Q 021613 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (310)
Q Consensus 90 ~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~ 169 (310)
..+++|.+|++ ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++.
T Consensus 4 ~~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~ls~~~------g~~i~~K~E~~nptGS~K~R~a~~~i~ 62 (404)
T PRK08198 4 LTLDDIEEARE--------------RLKGVVR-RTPLEYSRTLSELT------GAEVYLKCENLQRTGSFKIRGAYNKIA 62 (404)
T ss_pred CCHHHHHHHHH--------------HHhccCC-CCCceehhhHHHHh------CCEEEEEECCCCCCCCCHHHHHHHHHH
Confidence 46889988888 8888885 79999999999887 789999999999999999999999999
Q ss_pred HhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHH
Q 021613 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (310)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (310)
.+.+.+..++|+++|+||||+++|++|+++|++|+||||... +..|+++++.|||+|+.++. +++++.+.+.+.
T Consensus 63 ~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~Vi~~~~---~~~~~~~~a~~~ 136 (404)
T PRK08198 63 SLSEEERARGVVAASAGNHAQGVAYAASLLGIKATIVMPETA---PLSKVKATRSYGAEVVLHGD---VYDEALAKAQEL 136 (404)
T ss_pred hccHhhcCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC---CHHHHHHHHHHH
Confidence 888666666789999999999999999999999999999987 67899999999999999974 578887776665
Q ss_pred HHHccCCceeecCCCCCCC-------Chhhhh-----cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 250 WVTNVETTHYILGSVAGPH-------PYPMMV-----RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 250 ~~~~~~~~~Yi~gs~~~~h-------p~~~iv-----~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
..++ +.+|+.+.+ +++ ...||+ .|.+++|+||||+.+|+..+|+++++ .++++.|.
T Consensus 137 ~~~~--g~~~~~~~~-~~~~~~g~~t~a~EI~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~ 206 (404)
T PRK08198 137 AEET--GATFVHPFD-DPDVIAGQGTIGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAE 206 (404)
T ss_pred HHhc--CCEecCCCC-CccHHHHHHHHHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 4432 456664432 111 122333 35578899999999999999999987 66776664
No 15
>PLN02970 serine racemase
Probab=100.00 E-value=5.4e-32 Score=259.22 Aligned_cols=190 Identities=16% Similarity=0.122 Sum_probs=151.7
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHH
Q 021613 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (310)
Q Consensus 89 ~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l 168 (310)
...+++|++++. .+.++++ +|||+++++|++.+ |.+||+|+|++|||||||||++.+++
T Consensus 8 ~~~~~~i~~a~~--------------~i~~~i~-~TPL~~~~~l~~~~------g~~i~~K~E~~nptGSfKdRga~~~i 66 (328)
T PLN02970 8 AADLSSIREARK--------------RIAPFIH-RTPVLTSSSLDALA------GRSLFFKCECFQKGGAFKFRGACNAI 66 (328)
T ss_pred CcCHHHHHHHHH--------------HHhCcCC-CCCeeechhhHHhh------CCeEEEEecCCCCCCCcHHHHHHHHH
Confidence 346788888888 7888896 69999999999887 67999999999999999999999999
Q ss_pred HHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHH
Q 021613 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (310)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~ 248 (310)
..+.+.+..+.|+++|+||||+|+|++|+++|++|+||||... ++.|+.+|+.|||+|+.++. +++++.+.+.+
T Consensus 67 ~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~---~~~k~~~~~~~GA~Vi~~~~---~~~~~~~~a~~ 140 (328)
T PLN02970 67 FSLSDDQAEKGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNA---PACKVDAVIRYGGIITWCEP---TVESREAVAAR 140 (328)
T ss_pred HHhhHhhcCCeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhcCCEEEEeCC---CHHHHHHHHHH
Confidence 9887555555688999999999999999999999999999987 57899999999999999985 45665444433
Q ss_pred HHHHccCCceeecCCCCCCC-------Chhhh-----hcccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 249 DWVTNVETTHYILGSVAGPH-------PYPMM-----VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 249 ~~~~~~~~~~Yi~gs~~~~h-------p~~~i-----v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
. .++ .+.+|+...+ +++ ...|+ .+|++++++||||+.+|+..+|+++++ .+++..|.
T Consensus 141 l-a~~-~g~~~~~~~~-n~~~~~g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~ 211 (328)
T PLN02970 141 V-QQE-TGAVLIHPYN-DGRVISGQGTIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPK 211 (328)
T ss_pred H-HHh-cCCEEeCCCC-CcchhhehHHHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEEC
Confidence 3 333 3456654432 111 12333 356788899999999999999999887 66666554
No 16
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-32 Score=258.06 Aligned_cols=189 Identities=23% Similarity=0.240 Sum_probs=152.0
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHH
Q 021613 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (310)
Q Consensus 89 ~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l 168 (310)
|.++++|.+++. ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++
T Consensus 2 ~~~~~~i~~a~~--------------~i~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~Rga~~~l 60 (322)
T PRK06110 2 MFTLAELEAAAA--------------VVYAAMP-PTPQYRWPLLAERL------GCEVWVKHENHTPTGAFKVRGGLVYF 60 (322)
T ss_pred CCCHHHHHHHHH--------------HHhCcCc-CCCcccchhHHHHh------CCeEEEEeccCCCcCCcHHHHHHHHH
Confidence 346788888887 8888895 79999999999887 68999999999999999999999999
Q ss_pred HHhhhcCC-CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHH
Q 021613 169 LLAKRLGK-TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAI 247 (310)
Q Consensus 169 ~~a~~~g~-~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~ 247 (310)
..+.+++. ...|+++|+||||+|+|++|+++|++|+||||... ++.|+++++.|||+|+.++. +++++.+.+.
T Consensus 61 ~~a~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~---~~~k~~~i~~~GA~V~~~~~---~~~~~~~~a~ 134 (322)
T PRK06110 61 DRLARRGPRVRGVISATRGNHGQSVAFAARRHGLAATIVVPHGN---SVEKNAAMRALGAELIEHGE---DFQAAREEAA 134 (322)
T ss_pred HHhhhhcCCCceEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHH
Confidence 98887653 34588999999999999999999999999999987 56789999999999999863 5778777665
Q ss_pred HHHHHccCCceeecCCCCCCC-------Chhhhh-----cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 248 RDWVTNVETTHYILGSVAGPH-------PYPMMV-----RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 248 ~~~~~~~~~~~Yi~gs~~~~h-------p~~~iv-----~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
+.. ++ ++.+|+.+.+ ++ ...|++ .|++++|+|+||+.+|+..+++++++ .+++..|.
T Consensus 135 ~~~-~~-~~~~~~~~~~--~~~~~G~~t~~~Ei~~q~~~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~ 205 (322)
T PRK06110 135 RLA-AE-RGLHMVPSFH--PDLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSA 205 (322)
T ss_pred HHH-Hh-cCCEEcCCCC--ChHHhccchHHHHHHhhCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeC
Confidence 543 33 2455654321 11 123332 36788999999999999999999876 56666664
No 17
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=3.6e-32 Score=268.52 Aligned_cols=194 Identities=21% Similarity=0.267 Sum_probs=153.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHH
Q 021613 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (310)
Q Consensus 90 ~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~ 169 (310)
.++++|.+++. ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|+|.+++.
T Consensus 7 ~~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~ls~~~------g~~l~~K~E~~~ptGSfK~RgA~~~i~ 65 (420)
T PRK08639 7 VSAKDIDKAAK--------------RLKDVVP-ETPLQRNDYLSEKY------GANVYLKREDLQPVRSYKLRGAYNAIS 65 (420)
T ss_pred CCHHHHHHHHH--------------HHhCcCc-CCCccchHHHHHHh------CCEEEEEecCCCCCCCcHHHHHHHHHH
Confidence 47899999988 8888885 79999999999887 789999999999999999999999998
Q ss_pred HhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHH
Q 021613 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (310)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (310)
.+.+....++|+++|+||||+++|++|+++|++|+||||+.. +..|+.+++.|||+|+.+....++++++.+.+.+.
T Consensus 66 ~l~~~~~~~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~---~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~ 142 (420)
T PRK08639 66 QLSDEELAAGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTT---PQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEY 142 (420)
T ss_pred hCCHHhhCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---hHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHH
Confidence 865443456789999999999999999999999999999987 67899999999998654432224788888777665
Q ss_pred HHHccCCceeecCCC----CCCC--Chhhh------h--cccceeccchHHHHHHHHHHHHHhCC--ccccccCcc
Q 021613 250 WVTNVETTHYILGSV----AGPH--PYPMM------V--RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPRI 309 (310)
Q Consensus 250 ~~~~~~~~~Yi~gs~----~~~h--p~~~i------v--~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr~ 309 (310)
..++ +.+|+.+.+ ...| ...|+ . +|++++|+|+||+.+|+..++++.++ .+++..|.-
T Consensus 143 a~~~--g~~~~~~~~~~~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~ 216 (420)
T PRK08639 143 AEET--GATFIPPFDDPDVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAG 216 (420)
T ss_pred HHhc--CCcccCCCCChhHhcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 4432 445654332 0001 11222 1 57788999999999999999999887 667766653
No 18
>PRK12483 threonine dehydratase; Reviewed
Probab=99.98 E-value=1.2e-31 Score=270.47 Aligned_cols=183 Identities=24% Similarity=0.251 Sum_probs=149.0
Q ss_pred HHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHH
Q 021613 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189 (310)
Q Consensus 110 ~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg 189 (310)
..+..++++.++ +|||+++++|++.+ |.+||+|+|++|||||||+|+|++++..+.+..+.++|+++|+||||
T Consensus 25 ~~~~~~i~~~v~-~TPL~~~~~Ls~~~------g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~aSaGNha 97 (521)
T PRK12483 25 KILAARVYDVAR-ETPLQRAPNLSARL------GNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITASAGNHA 97 (521)
T ss_pred HHHHHHHhhhcC-CCCeeEchhhhHhh------CCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEECCCHHH
Confidence 467778888885 79999999999988 78999999999999999999999999877654445568899999999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCC-
Q 021613 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH- 268 (310)
Q Consensus 190 ~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~h- 268 (310)
+++|++|+++|++|+||||..+ +..|+.+++.|||+|+.++. +++++.+.+.+...++ +.+|+.+.+ .++
T Consensus 98 ~gvA~aA~~lGi~~~IvmP~~t---p~~Kv~~~r~~GAeVil~g~---~~d~a~~~A~~la~e~--g~~~v~pfd-d~~v 168 (521)
T PRK12483 98 QGVALAAARLGVKAVIVMPRTT---PQLKVDGVRAHGGEVVLHGE---SFPDALAHALKLAEEE--GLTFVPPFD-DPDV 168 (521)
T ss_pred HHHHHHHHHhCCCEEEEECCCC---CHHHHHHHHHCCCEEEEECC---CHHHHHHHHHHHHHhc--CCeeeCCCC-ChHH
Confidence 9999999999999999999998 67899999999999999974 6888887777654433 345654332 011
Q ss_pred ------Chhhh------hcccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 269 ------PYPMM------VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 269 ------p~~~i------v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
...|| .+|++++|+|+||+.+|+..++++.++ .++++.|.
T Consensus 169 iaGqgTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~ 222 (521)
T PRK12483 169 IAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPD 222 (521)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 01122 256788999999999999999999887 66777664
No 19
>PRK08638 threonine dehydratase; Validated
Probab=99.98 E-value=2.5e-31 Score=255.43 Aligned_cols=189 Identities=21% Similarity=0.183 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHH
Q 021613 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (310)
Q Consensus 91 ~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~ 170 (310)
.+++|.++++ ++.++++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..
T Consensus 10 ~~~~i~~a~~--------------~i~~~i~-~TPlv~~~~l~~~~------g~~i~~K~E~~nptGS~KdR~a~~~i~~ 68 (333)
T PRK08638 10 AIDDIIEAKQ--------------RLAGRIR-KTPLPRSNYLSERC------KGEIFLKLENMQRTGSFKIRGAFNKLSS 68 (333)
T ss_pred CHHHHHHHHH--------------HhhCcCc-CCCceechhhHHhh------CCeEEEEeccCCccCCcHHHHHHHHHHh
Confidence 5788888888 8888895 69999999999887 6799999999999999999999999988
Q ss_pred hhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHH
Q 021613 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (310)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (310)
+.+..+.++|+++|+||||+|+|++|+.+|++|+||||+.. ++.|+.+++.|||+|+.++. +++++.+.+.+..
T Consensus 69 ~~~~~~~~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~~a 142 (333)
T PRK08638 69 LTDAEKRKGVVACSAGNHAQGVALSCALLGIDGKVVMPKGA---PKSKVAATCGYGAEVVLHGD---NFNDTIAKVEEIV 142 (333)
T ss_pred ccHHhcCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCC---cHHHHHHHHHcCCEEEEECc---CHHHHHHHHHHHH
Confidence 76643345688999999999999999999999999999987 57899999999999999974 5677766554433
Q ss_pred HHccCCceeecCCC----CCCC--Chhhhh-----cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 251 VTNVETTHYILGSV----AGPH--PYPMMV-----RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 251 ~~~~~~~~Yi~gs~----~~~h--p~~~iv-----~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
++. +.+|+.... ...+ ...|++ +|++++|+||||+.+|+..+|+++++ .+++..|.
T Consensus 143 -~~~-g~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~ 211 (333)
T PRK08638 143 -EEE-GRTFIPPYDDPKVIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSE 211 (333)
T ss_pred -Hhc-CCEEcCcCCCcchhccccHHHHHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 332 345554321 0001 123332 46678899999999999999999886 56666664
No 20
>PRK07048 serine/threonine dehydratase; Validated
Probab=99.98 E-value=2.5e-31 Score=253.53 Aligned_cols=191 Identities=18% Similarity=0.180 Sum_probs=149.9
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHH
Q 021613 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (310)
Q Consensus 89 ~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l 168 (310)
++++++|.+|++ ++.++++ +|||+++++|++.. +.+||+|+|++|||||||||++.+++
T Consensus 5 ~~~~~~i~~a~~--------------~i~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~i 63 (321)
T PRK07048 5 LPTYDDVAAAAA--------------RLAGVAH-RTPVLTSRTADART------GAQVFFKCENFQRMGAFKFRGAYNAL 63 (321)
T ss_pred cCCHHHHHHHHH--------------HhhCCCC-CCCCccchhhHHhc------CCeEEEEeccCCCCCCeeHHHHHHHH
Confidence 456888988888 8899996 69999999998876 78999999999999999999999999
Q ss_pred HHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHH
Q 021613 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (310)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~ 248 (310)
..+.+.+...+|+++|+||||+|+|++|+.+|++|+||||... ++.|+++|+.|||+|+.++. +++++...+ +
T Consensus 64 ~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~---~~~k~~~~~~~GAeV~~~~~---~~~~~~~~a-~ 136 (321)
T PRK07048 64 SQFSPEQRRAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDA---PAAKVAATRGYGGEVVTYDR---YTEDREEIG-R 136 (321)
T ss_pred HhhhHhhcCCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHCCCEEEEECC---CHHHHHHHH-H
Confidence 9877544444678999999999999999999999999999987 57899999999999999985 355554333 3
Q ss_pred HHHHccCCceeecCCC----CCCC--Chhhhh-----cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 249 DWVTNVETTHYILGSV----AGPH--PYPMMV-----RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 249 ~~~~~~~~~~Yi~gs~----~~~h--p~~~iv-----~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
.+.++ .+.+|+.+.. ...+ ...|++ +|++++++||||+.+|+..+++++++ .+++..|.
T Consensus 137 ~l~~~-~g~~~~~~~~~~~~~~g~~t~~~EI~~q~~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~ 208 (321)
T PRK07048 137 RLAEE-RGLTLIPPYDHPHVIAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPE 208 (321)
T ss_pred HHHHh-cCCEEECCCCCcchhhccchHHHHHHhhcCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeC
Confidence 33333 2445654322 1001 123332 57788999999999999999999876 55555553
No 21
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=99.98 E-value=1.2e-31 Score=263.96 Aligned_cols=183 Identities=23% Similarity=0.279 Sum_probs=144.5
Q ss_pred HHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHH
Q 021613 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (310)
Q Consensus 115 ~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~ 194 (310)
++.+.++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+.+..+.+.+..++|+++|+||||+++|+
T Consensus 9 ~i~~~i~-~TPl~~~~~ls~~~------g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~gvv~aSsGN~g~a~A~ 81 (409)
T TIGR02079 9 RLKEVVP-HTPLQLNERLSEKY------GANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKGVVCASAGNHAQGFAY 81 (409)
T ss_pred HHhCcCC-CCCccccHHHHHHh------CCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCEEEEECccHHHHHHHH
Confidence 8888885 69999999999887 7899999999999999999999999987654444456889999999999999
Q ss_pred HHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCC----CCC--
Q 021613 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVA----GPH-- 268 (310)
Q Consensus 195 aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~----~~h-- 268 (310)
+|+++|++|+||||+.. +..|+.+++.|||+|+.+....++++++.+.+.+...++ +.+|+.+..- ..|
T Consensus 82 ~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~~~~--g~~~~~~~~~~~~~~g~~t 156 (409)
T TIGR02079 82 ACRHLGVHGTVFMPATT---PKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDH--GGTFIPPFDDPRIIEGQGT 156 (409)
T ss_pred HHHHcCCCEEEEECCCC---CHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhc--CCEEeCCCCCHhHhhhhHH
Confidence 99999999999999987 678999999999985433322247888887777655443 4456644320 001
Q ss_pred Chhhh------hcccceeccchHHHHHHHHHHHHHhCC--ccccccCcc
Q 021613 269 PYPMM------VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPRI 309 (310)
Q Consensus 269 p~~~i------v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr~ 309 (310)
...|+ .+|++++|+|+||+.+|+..+|+++++ .+++..|.-
T Consensus 157 i~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~ 205 (409)
T TIGR02079 157 VAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEG 205 (409)
T ss_pred HHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 11122 257788999999999999999999887 667777654
No 22
>PRK08813 threonine dehydratase; Provisional
Probab=99.98 E-value=3e-31 Score=256.11 Aligned_cols=181 Identities=24% Similarity=0.285 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHH
Q 021613 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (310)
Q Consensus 91 ~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~ 170 (310)
++++|.+|+. +|+++++ +|||++++.| +||+|+|++|||||||+|++.+++..
T Consensus 22 ~~~~i~~A~~--------------~i~~~i~-~TPL~~~~~l------------~v~lK~E~~nptGSfK~RgA~~~l~~ 74 (349)
T PRK08813 22 SVADVLAAQA--------------RLRRYLS-PTPLHYAERF------------GVWLKLENLQRTGSYKVRGALNALLA 74 (349)
T ss_pred CHHHHHHHHH--------------HHhCcCC-CCCeEECCCC------------cEEEEecCCCCcCCCHHHHHHHHHHH
Confidence 5789999998 8999994 7999998542 49999999999999999999999999
Q ss_pred hhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHH
Q 021613 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (310)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (310)
+.+.+..+.|+++|+||||+|+|++|+.+|++|+||||... ++.|+++++.|||+|+.++. +++++...+.+..
T Consensus 75 a~~~~~~~~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~---~~~K~~~i~~~GAeVv~~g~---~~~~a~~~a~~la 148 (349)
T PRK08813 75 GLERGDERPVICASAGNHAQGVAWSAYRLGVQAITVMPHGA---PQTKIAGVAHWGATVRQHGN---SYDEAYAFARELA 148 (349)
T ss_pred HHHcCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHHHH
Confidence 99998876789999999999999999999999999999987 67999999999999999964 6788766655543
Q ss_pred HHccCCceeecCCCCCCCCh---------hhh---hcccceeccchHHHHHHHHHHHHHhCCccccccCcc
Q 021613 251 VTNVETTHYILGSVAGPHPY---------PMM---VRDFHATSIGEMGWETRCADCMRWWWFKCHGSLPRI 309 (310)
Q Consensus 251 ~~~~~~~~Yi~gs~~~~hp~---------~~i---v~d~~~v~vGT~G~e~gi~q~l~~~~~~~~~~~Pr~ 309 (310)
++ .+.+|+.... ||+ .|+ .+|++++|+|+||+.+|+..+|++.+..+++..|.-
T Consensus 149 -~~-~g~~~v~~~~---np~~i~G~~Tig~EI~e~~pD~VvvpvGgGGliaGia~~lk~~~~rVigVqpeg 214 (349)
T PRK08813 149 -DQ-NGYRFLSAFD---DPDVIAGQGTVGIELAAHAPDVVIVPIGGGGLASGVALALKSQGVRVVGAQVEG 214 (349)
T ss_pred -Hh-cCCEEcCccC---ChHHHHHHHHHHHHHHcCCCCEEEEEeCccHHHHHHHHHHhcCCCEEEEEEECC
Confidence 33 2445553322 221 222 468889999999999999999998766777666653
No 23
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=99.97 E-value=5.5e-31 Score=251.29 Aligned_cols=188 Identities=24% Similarity=0.218 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHH
Q 021613 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (310)
Q Consensus 91 ~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~ 170 (310)
++++|.+|+. ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++..
T Consensus 2 ~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~i~~ 60 (317)
T TIGR02991 2 TLQDIERAAA--------------RISGRVE-ETPLVESPSLSELC------GVPVHLKLEHRQTTGSFKLRGATNAVLS 60 (317)
T ss_pred CHHHHHHHHH--------------HHhCcCC-CCCceechhhHHhh------CCeEEEEeccCCCCCCcHHHHHHHHHHh
Confidence 4678888888 8899996 69999999999877 6799999999999999999999999987
Q ss_pred hhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHH
Q 021613 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (310)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (310)
+.+......|+++|+||||+|+|++|+++|++|+||||... ++.|+++|+.|||+|+.++. +++++.+.+.+..
T Consensus 61 ~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~~~ 134 (317)
T TIGR02991 61 LSDTQRAAGVVAASTGNHGRALAYAAAEEGVRATICMSELV---PQNKVDEIRRLGAEVRIVGR---SQDDAQEEVERLV 134 (317)
T ss_pred hhHhccCCeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCC---CHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHHHH
Confidence 76443334578999999999999999999999999999987 57899999999999999985 4667655544433
Q ss_pred HHccCCceeecCCCCCCC-------Chhhhhc-----ccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 251 VTNVETTHYILGSVAGPH-------PYPMMVR-----DFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 251 ~~~~~~~~Yi~gs~~~~h-------p~~~iv~-----d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
++ .+.+|+.+.. +++ ...|++. |++++++|+||+..|+..+|+++++ .+++..|.
T Consensus 135 -~~-~g~~~~~~~~-n~~~~~g~~t~a~Ei~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~ 203 (317)
T TIGR02991 135 -AD-RGLTMLPPFD-HPDIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSME 203 (317)
T ss_pred -Hh-cCCEeeCCCC-ChHHHhhHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 33 2445654332 111 1234433 3468899999999999999999887 55665553
No 24
>PRK06608 threonine dehydratase; Provisional
Probab=99.97 E-value=3.9e-31 Score=254.51 Aligned_cols=190 Identities=24% Similarity=0.256 Sum_probs=152.3
Q ss_pred hhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHH
Q 021613 88 LMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ 167 (310)
Q Consensus 88 l~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~ 167 (310)
+.+.+++|.+|+. .+.+.++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.++
T Consensus 3 ~~~~~~~i~~A~~--------------~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~ 61 (338)
T PRK06608 3 LLQNPQNIAAAHN--------------RIKQYLH-LTPIVHSESLNEML------GHEIFFKVESLQKTGAFKVRGVLNH 61 (338)
T ss_pred CCCCHHHHHHHHH--------------HHhCcCc-CCCccchHhHHHHh------CCEEEEEeCCCCCCCCcHHHHHHHH
Confidence 3456899999988 7888896 69999999999987 7899999999999999999999999
Q ss_pred HHHhhhcCC-CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHH
Q 021613 168 ALLAKRLGK-TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEA 246 (310)
Q Consensus 168 l~~a~~~g~-~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a 246 (310)
+..+.+.|+ .++|+++|+||||+|+|++|+++|++|+||||... ++.|+++++.|||+|+.++. .+++.+.+
T Consensus 62 v~~a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~---~~~k~~~l~~~GA~V~~~~~----~~~~~~~a 134 (338)
T PRK06608 62 LLELKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNT---SKVKQQAALYYGGEVILTNT----RQEAEEKA 134 (338)
T ss_pred HHHhhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC----HHHHHHHH
Confidence 999999887 24678999999999999999999999999999987 57899999999999999964 24554444
Q ss_pred HHHHHHccCCceeecCCCCCCC-------Chhhh------hcccceeccchHHHHHHHHHHHHHhCC--ccccccCcc
Q 021613 247 IRDWVTNVETTHYILGSVAGPH-------PYPMM------VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPRI 309 (310)
Q Consensus 247 ~~~~~~~~~~~~Yi~gs~~~~h-------p~~~i------v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr~ 309 (310)
.+ .++ .+.+|+...+ +++ ...|+ -+|++++++||||+.+|+..+++++++ .+++..|.-
T Consensus 135 ~~--~~~-~~~~~~~~~~-~~~~~~g~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~ 208 (338)
T PRK06608 135 KE--DEE-QGFYYIHPSD-SDSTIAGAGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLN 208 (338)
T ss_pred HH--HHh-CCCEEcCCCC-CHHHhccHHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCC
Confidence 44 222 3456665442 111 11222 246778899999999999999998876 566666643
No 25
>PRK07334 threonine dehydratase; Provisional
Probab=99.97 E-value=6.6e-31 Score=258.15 Aligned_cols=190 Identities=24% Similarity=0.248 Sum_probs=151.6
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHH
Q 021613 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (310)
Q Consensus 89 ~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l 168 (310)
+..+++|.+|+. ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||||++.+++
T Consensus 4 ~~~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~KdR~a~~~i 62 (403)
T PRK07334 4 MVTLADIRAAAA--------------RLAGQVL-RTPCVHSRTLSQIT------GAEVWLKFENLQFTASFKERGALNKL 62 (403)
T ss_pred CcCHHHHHHHHH--------------HHhCCCC-CCCccchHHHHHhh------CCeEEEEeccCCCCCCchHHHHHHHH
Confidence 346889988888 8889996 69999999999887 68999999999999999999999999
Q ss_pred HHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHH
Q 021613 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (310)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~ 248 (310)
..+.+....+.|+++|+||||+|+|++|+++|++|+||||... ++.|+++|+.|||+|+.++. +++++.+.+.+
T Consensus 63 ~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~v~~~~~---~~~~~~~~a~~ 136 (403)
T PRK07334 63 LLLTEEERARGVIAMSAGNHAQGVAYHAQRLGIPATIVMPRFT---PTVKVERTRGFGAEVVLHGE---TLDEARAHARE 136 (403)
T ss_pred HhcCHHHhCCcEEEECCcHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEECc---CHHHHHHHHHH
Confidence 9876443334578999999999999999999999999999987 57899999999999999874 57776665544
Q ss_pred HHHHccCCceeecCCCCCCC-------Chhhh-----hcccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 249 DWVTNVETTHYILGSVAGPH-------PYPMM-----VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 249 ~~~~~~~~~~Yi~gs~~~~h-------p~~~i-----v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
. .++ .+.+|+.+.. +++ ...|+ .+|++++++||||+.+|+.++|+++++ .+++..|.
T Consensus 137 l-~~~-~~~~~~~~~~-~~~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~ 207 (403)
T PRK07334 137 L-AEE-EGLTFVHPYD-DPAVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTE 207 (403)
T ss_pred H-HHh-cCCEecCCCC-CHHHHHhHHHHHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 3 333 3456654332 111 12233 246778899999999999999999887 55666654
No 26
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=99.97 E-value=1.2e-30 Score=245.73 Aligned_cols=185 Identities=24% Similarity=0.260 Sum_probs=148.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhh
Q 021613 93 SELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAK 172 (310)
Q Consensus 93 ~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~ 172 (310)
++|.+++. .+.+++| +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+.
T Consensus 2 ~~~~~~~~--------------~i~~~ig-~TPl~~~~~l~~~~------g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~ 60 (304)
T cd01562 2 EDILAAAA--------------RIKPVVR-RTPLLTSPTLSELL------GAEVYLKCENLQKTGSFKIRGAYNKLLSLS 60 (304)
T ss_pred hHHHHHHH--------------HHhCcCC-CCCcccchhhHHHh------CCeEEEEeccCCCcCCcHHHhHHHHHHhcC
Confidence 56777777 7888996 79999999999887 689999999999999999999999999998
Q ss_pred hcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 173 RLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 173 ~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
+.+....|+++|+||||.|+|++|+++|++|+||||... +..|+++|+.+||+|+.++. +++++.+.+.+. .+
T Consensus 61 ~~~~~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~---~~~k~~~l~~~Ga~vi~~~~---~~~~~~~~a~~l-a~ 133 (304)
T cd01562 61 EEERAKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETA---PAAKVDATRAYGAEVVLYGE---DFDEAEAKAREL-AE 133 (304)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHHH-HH
Confidence 877545678999999999999999999999999999987 57899999999999999986 467776555444 33
Q ss_pred ccCCceeecCCCCCCC-------Chhhh-----hcccceeccchHHHHHHHHHHHHHhCC--ccccccC
Q 021613 253 NVETTHYILGSVAGPH-------PYPMM-----VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLP 307 (310)
Q Consensus 253 ~~~~~~Yi~gs~~~~h-------p~~~i-----v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~P 307 (310)
+ .+.+|++..+ ++. ...++ .+|++++++||||+.+|+..+|+++++ .+++.-|
T Consensus 134 ~-~~~~~~~~~~-n~~~~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~ 200 (304)
T cd01562 134 E-EGLTFIHPFD-DPDVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEP 200 (304)
T ss_pred h-cCCEEeCCCC-CcchhccHHHHHHHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 3 2456664332 111 12333 256788899999999999999999875 5555444
No 27
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=99.97 E-value=1.5e-30 Score=255.44 Aligned_cols=209 Identities=16% Similarity=0.122 Sum_probs=147.2
Q ss_pred hHHHHHHHHHHhcCChhHH-HHHHHHHhhh-cCCCCCEEEccccchhhcC--CCCCCCeEEEEecCCCC-CCChHHHHHH
Q 021613 91 ALSELESALHKLADDRDFQ-EELSGILRDY-VGRETPLYFAERLTEHYRR--PNGGGPHIYLKREDLNH-TGAHKINNAV 165 (310)
Q Consensus 91 ~~~~i~~a~~~~~~d~~f~-~el~~~l~~~-vg~~TPL~~~~~Ls~~~~~--~~~~g~~I~lK~E~lnp-TGSfK~Rga~ 165 (310)
++++|.+|...+..-+.|. +.+.+....+ ++ +|||+++++|++.++. .++.+.+||+|+|++|| |||||||+++
T Consensus 19 ~~~~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~-~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~ 97 (404)
T cd06447 19 SREDIFDAEARLKRFAPYIAKVFPETAASHGII-ESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGI 97 (404)
T ss_pred CHHHHHHHHHHHhhcchhhhhhCccccccCCcc-CCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHH
Confidence 6899999998332222222 1111111110 65 6999999999987610 00013799999999999 9999999999
Q ss_pred HHHHH-----hhhcCC--------------------CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHH
Q 021613 166 GQALL-----AKRLGK--------------------TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVF 220 (310)
Q Consensus 166 ~~l~~-----a~~~g~--------------------~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~ 220 (310)
+++.. +.+.|. .++|+++|+||||+|+|++|+.+|++|+||||.+. ++.|++
T Consensus 98 ~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~---~~~K~~ 174 (404)
T cd06447 98 YEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADA---KQWKKD 174 (404)
T ss_pred HHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---cHHHHH
Confidence 99864 444444 24789999999999999999999999999999998 689999
Q ss_pred HHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCC---CCCC---Chhhhh--------------ccccee
Q 021613 221 RMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSV---AGPH---PYPMMV--------------RDFHAT 280 (310)
Q Consensus 221 ~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~---~~~h---p~~~iv--------------~d~~~v 280 (310)
+|+.|||+|+.++. +++++.+.+.+.. ++..+.+|+...+ ...| ...||+ +|++++
T Consensus 175 ~ira~GAeVv~v~~---~~~~a~~~a~~la-~~~~~~~~v~~~n~~~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~Vvv 250 (404)
T cd06447 175 KLRSKGVTVVEYET---DYSKAVEEGRKQA-AADPMCYFVDDENSRDLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYL 250 (404)
T ss_pred HHHHCCCEEEEECC---CHHHHHHHHHHHH-HHCCCeEeCCCCCchhHHhhHHHHHHHHHHHhhhccCccccCCCCEEEE
Confidence 99999999999985 5777766655543 3323344543321 1111 122333 235678
Q ss_pred ccchHHHHHHHHHHHHHh-CC--ccccccC
Q 021613 281 SIGEMGWETRCADCMRWW-WF--KCHGSLP 307 (310)
Q Consensus 281 ~vGT~G~e~gi~q~l~~~-~~--~~~~~~P 307 (310)
++|+||+.+|+..+|++. ++ .+++..|
T Consensus 251 pvG~GGli~GIa~~lK~~~~p~~kVigVeP 280 (404)
T cd06447 251 PCGVGGAPGGVAFGLKLIFGDNVHCFFAEP 280 (404)
T ss_pred ecCccHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 999999999999999997 55 4455555
No 28
>PRK06815 hypothetical protein; Provisional
Probab=99.97 E-value=2.1e-30 Score=247.06 Aligned_cols=189 Identities=26% Similarity=0.274 Sum_probs=147.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHH
Q 021613 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (310)
Q Consensus 91 ~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~ 170 (310)
.+++|.++++ ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||||++.+++..
T Consensus 3 ~~~~i~~a~~--------------~~~~~i~-~TPLv~~~~l~~~~------g~~i~~K~E~~nptgS~KdR~a~~~~~~ 61 (317)
T PRK06815 3 LFDAILEAHQ--------------RLRPQVR-VTPLEHSPLLSQHT------GCEVYLKCEHLQHTGSFKFRGASNKLRL 61 (317)
T ss_pred HHHHHHHHHH--------------HhhCCCC-CCCccccHhHHHhh------CCeEEEEecCCCCCCCcHHHHHHHHHHh
Confidence 3578888888 8888895 79999999999877 7899999999999999999999999987
Q ss_pred hhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHH
Q 021613 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (310)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (310)
+.+..+...|+++|+||||+|+|++|+++|++|+||||... ++.|+.+|+.+||+|+.++. +++++...+.+ +
T Consensus 62 l~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~-~ 134 (317)
T PRK06815 62 LNEAQRQQGVITASSGNHGQGVALAAKLAGIPVTVYAPEQA---SAIKLDAIRALGAEVRLYGG---DALNAELAARR-A 134 (317)
T ss_pred cchhhcCceEEEECCChHHHHHHHHHHHhCCCEEEEECCCC---CHHHHHHHHHCCCEEEEECC---CHHHHHHHHHH-H
Confidence 65443444578899999999999999999999999999987 57899999999999999986 35665544433 3
Q ss_pred HHccCCceeecCCCC---CCC---Chhhhh-----cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 251 VTNVETTHYILGSVA---GPH---PYPMMV-----RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 251 ~~~~~~~~Yi~gs~~---~~h---p~~~iv-----~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
.++ .+.+|+.+.+- ..+ ...|+. +|.+++++|+||+..|+..+|+++++ .+++.-|.
T Consensus 135 ~~~-~~~~~~~~~~~~~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~ 204 (317)
T PRK06815 135 AEQ-QGKVYISPYNDPQVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPA 204 (317)
T ss_pred HHh-cCCEEecCCCChhhhcchhHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 333 23456543320 001 123332 46678899999999999999999876 55665554
No 29
>PLN02550 threonine dehydratase
Probab=99.97 E-value=9.3e-31 Score=266.35 Aligned_cols=181 Identities=23% Similarity=0.244 Sum_probs=148.0
Q ss_pred HHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHH
Q 021613 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189 (310)
Q Consensus 110 ~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg 189 (310)
..+..++.+.++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+.+..+.+....++|+++|+||||
T Consensus 97 ~il~~~v~~~i~-~TPL~~s~~LS~~~------g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~~~GVV~aSaGNhA 169 (591)
T PLN02550 97 NILSAKVYDVAI-ESPLQLAKKLSERL------GVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICSSAGNHA 169 (591)
T ss_pred HHHhhhhhcccc-CChhhhhHHhhHhh------CCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcCCCCEEEECCCHHH
Confidence 356667788885 79999999999988 78999999999999999999999999988655555568899999999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCC
Q 021613 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP 269 (310)
Q Consensus 190 ~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp 269 (310)
+++|++|+++|++|+||||..+ +..|+++++.|||+|+.++. +++++.+.+.+...++ +..|+.+.+ +|
T Consensus 170 qgvA~aA~~lGika~IvmP~~t---p~~Kv~~~r~~GAeVvl~g~---~~dea~~~A~~la~e~--g~~fi~pfd---dp 238 (591)
T PLN02550 170 QGVALSAQRLGCDAVIAMPVTT---PEIKWQSVERLGATVVLVGD---SYDEAQAYAKQRALEE--GRTFIPPFD---HP 238 (591)
T ss_pred HHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHHHHHhc--CCEEECCCC---Ch
Confidence 9999999999999999999988 67899999999999999974 6788777766544332 345664332 22
Q ss_pred h---------hhhh------cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 270 Y---------PMMV------RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 270 ~---------~~iv------~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
+ .||+ .|++++|+|+||+.+|+..+++++++ .++++.|.
T Consensus 239 ~viaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~ 294 (591)
T PLN02550 239 DVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPS 294 (591)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 1 1222 46678999999999999999999987 66777664
No 30
>PRK11761 cysM cysteine synthase B; Provisional
Probab=99.97 E-value=1.6e-30 Score=245.87 Aligned_cols=181 Identities=23% Similarity=0.227 Sum_probs=141.0
Q ss_pred HHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC---CeEEEecCcchHHHH
Q 021613 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVA 191 (310)
Q Consensus 115 ~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhg~A 191 (310)
.+.+.+| +|||+++++|+... +.+||+|+|++|||||||+|++.+++..+.+.|. ...|+++|+||||+|
T Consensus 5 ~i~~~~g-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~a 77 (296)
T PRK11761 5 TLEDTIG-NTPLVKLQRLPPDR------GNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIA 77 (296)
T ss_pred cHHHhcC-CCceEeccccccCC------CCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHH
Confidence 5667786 59999999998765 6899999999999999999999999999998875 135789999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCC----CCC
Q 021613 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSV----AGP 267 (310)
Q Consensus 192 lA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~----~~~ 267 (310)
+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++.. ++++++.+.+.+. .++ .+.+|++... ...
T Consensus 78 lA~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a~~l-~~~-~~~~~~~~~~n~~~~~~ 151 (296)
T PRK11761 78 LAMIAAIKGYRMKLIMPENM---SQERRAAMRAYGAELILVPKE-QGMEGARDLALQM-QAE-GEGKVLDQFANPDNPLA 151 (296)
T ss_pred HHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHH-Hhc-cCCEecCCCCChhhHHH
Confidence 99999999999999999987 578999999999999999964 3566664444333 222 2334442221 111
Q ss_pred C---Chhhhh------cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 268 H---PYPMMV------RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 268 h---p~~~iv------~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
| ...|++ .|++++++||||+.+|+.++|+++++ .+++..|.
T Consensus 152 ~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~ 203 (296)
T PRK11761 152 HYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPE 203 (296)
T ss_pred HhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 2 123343 35577889999999999999999876 66666653
No 31
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=99.97 E-value=2.7e-30 Score=243.63 Aligned_cols=180 Identities=22% Similarity=0.255 Sum_probs=139.6
Q ss_pred HhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC---CeEEEecCcchHHHHH
Q 021613 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVAT 192 (310)
Q Consensus 116 l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhg~Al 192 (310)
+.+++| +|||+++++|+... |.+||+|+|++|||||||+|++.+++..+.+.|+ ...|+++|+||||+|+
T Consensus 2 i~~~ig-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~al 74 (290)
T TIGR01138 2 IEQTVG-NTPLVRLQRMGPEN------GSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIAL 74 (290)
T ss_pred hHHhCC-CCceEEccccccCC------CCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHH
Confidence 345676 69999999998776 6899999999999999999999999999998886 2468899999999999
Q ss_pred HHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCC---
Q 021613 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP--- 269 (310)
Q Consensus 193 A~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp--- 269 (310)
|++|+++|++|+||||+.. +..|+++|+.|||+|+.++.. ++++++.+.+.+ ..++... +|+....-..+|
T Consensus 75 A~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~v~~v~~~-~~~~~~~~~a~~-l~~~~~~-~~~~~~~~~~~~~~~ 148 (290)
T TIGR01138 75 AMIAALKGYRMKLLMPDNM---SQERKAAMRAYGAELILVTKE-EGMEGARDLALE-LANRGEG-KLLDQFNNPDNPYAH 148 (290)
T ss_pred HHHHHHcCCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHH-HHHhCCC-CCCCccCCcccHHHH
Confidence 9999999999999999987 578999999999999999864 346665444333 3333222 343322111122
Q ss_pred ----hhhhh------cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 270 ----YPMMV------RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 270 ----~~~iv------~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
..|++ .|++++++||||+.+|+..+|+++++ .+++..|.
T Consensus 149 ~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~ 199 (290)
T TIGR01138 149 YTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPE 199 (290)
T ss_pred hHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 22332 36678899999999999999999886 56666554
No 32
>PRK08246 threonine dehydratase; Provisional
Probab=99.97 E-value=2.7e-30 Score=245.77 Aligned_cols=187 Identities=22% Similarity=0.194 Sum_probs=144.4
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHH
Q 021613 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (310)
Q Consensus 89 ~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l 168 (310)
+++++||.+|+. ++.++++ +|||++++.|+.. +.+||+|+|++|||||||+|++.+++
T Consensus 4 ~~~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~l~~~-------~~~i~~K~E~~nptGS~K~R~a~~~~ 61 (310)
T PRK08246 4 MITRSDVRAAAQ--------------RIAPHIR-RTPVLEADGAGFG-------PAPVWLKLEHLQHTGSFKARGAFNRL 61 (310)
T ss_pred CCCHHHHHHHHH--------------HHhCcCC-CCCeeeccccccC-------CCEEEEEECCCCCCCCCHHHHHHHHH
Confidence 467899999999 8888996 6999999988742 57999999999999999999999999
Q ss_pred HHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHH
Q 021613 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (310)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~ 248 (310)
..+.+ + .+.|+++|+||||+|+|++|+++|++|+||||... ++.|+.+|+.|||+|+.++. +++++.+.+.+
T Consensus 62 ~~~~~-~-~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~ 133 (310)
T PRK08246 62 LAAPV-P-AAGVVAASGGNAGLAVAYAAAALGVPATVFVPETA---PPAKVARLRALGAEVVVVGA---EYADALEAAQA 133 (310)
T ss_pred Hhhcc-c-CCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCC---cHHHHHHHHHCCCEEEEeCC---CHHHHHHHHHH
Confidence 88766 3 34678999999999999999999999999999986 57899999999999999985 46666655544
Q ss_pred HHHHccCCceeecCCC---CCCC---Chhhh-----hcccceeccchHHHHHHHHHHHHHhCCccccccCc
Q 021613 249 DWVTNVETTHYILGSV---AGPH---PYPMM-----VRDFHATSIGEMGWETRCADCMRWWWFKCHGSLPR 308 (310)
Q Consensus 249 ~~~~~~~~~~Yi~gs~---~~~h---p~~~i-----v~d~~~v~vGT~G~e~gi~q~l~~~~~~~~~~~Pr 308 (310)
...+. +.+|+.+.. ...+ ...|+ .+|++++++|+||+.+|+..+|+.. +.+++.-|.
T Consensus 134 ~~~~~--g~~~~~~~~n~~~i~g~~t~~~Ei~eq~~~~D~iv~~vG~GG~~~Gi~~~~~~~-~~vi~ve~~ 201 (310)
T PRK08246 134 FAAET--GALLCHAYDQPEVLAGAGTLGLEIEEQAPGVDTVLVAVGGGGLIAGIAAWFEGR-ARVVAVEPE 201 (310)
T ss_pred HHHhc--CCEeCCCCCChhhhcchHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHhcCC-CEEEEEeeC
Confidence 33322 334442221 0001 12333 3566788999999999999999763 455555443
No 33
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=99.97 E-value=1.6e-30 Score=253.08 Aligned_cols=171 Identities=22% Similarity=0.220 Sum_probs=140.8
Q ss_pred CCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeE
Q 021613 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203 (310)
Q Consensus 124 TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~ 203 (310)
|||+++++|++.+ |.+||+|+|++|||||||+|++.+++..+.+.++.++|+++|+||||+++|++|+++|++|
T Consensus 1 TPl~~~~~ls~~~------g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~ 74 (380)
T TIGR01127 1 TPLIYSTTLSDIT------GSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKA 74 (380)
T ss_pred CCceehHHHHHHh------CCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 8999999999987 7899999999999999999999999999988887677899999999999999999999999
Q ss_pred EEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCC-------Chhhh---
Q 021613 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH-------PYPMM--- 273 (310)
Q Consensus 204 ~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~h-------p~~~i--- 273 (310)
+||||+.. +..|+++++.|||+|+.++. +++++.+.+.+...+ .+.+|+...+ .++ ...|+
T Consensus 75 ~iv~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~a~~~a~~~~~~--~~~~~~~~~~-~~~~~~g~~t~~~Ei~~q 145 (380)
T TIGR01127 75 VIVMPESA---PPSKVKATKSYGAEVILHGD---DYDEAYAFATSLAEE--EGRVFVHPFD-DEFVMAGQGTIGLEIMED 145 (380)
T ss_pred EEEEcCCC---cHHHHHHHHHCCCEEEEECC---CHHHHHHHHHHHHHh--cCCEecCCCC-ChhhhhhhHHHHHHHHHh
Confidence 99999987 67899999999999999874 578877666554333 2445654332 111 11223
Q ss_pred --hcccceeccchHHHHHHHHHHHHHhCC--ccccccCcc
Q 021613 274 --VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPRI 309 (310)
Q Consensus 274 --v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr~ 309 (310)
.+|++++|+||||+.+|+..+|++.++ .+++..|.-
T Consensus 146 ~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~ 185 (380)
T TIGR01127 146 IPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEG 185 (380)
T ss_pred CCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 246678899999999999999999887 667776643
No 34
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=99.97 E-value=2.9e-30 Score=259.73 Aligned_cols=183 Identities=25% Similarity=0.266 Sum_probs=147.5
Q ss_pred HHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHH
Q 021613 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189 (310)
Q Consensus 110 ~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg 189 (310)
+.+..++.+.++ +|||+++++|++.+ +.+||+|+|++|||||||+|+|.+++..+.+..+.++|+++|+||||
T Consensus 5 ~~~~~~v~~~i~-~TPL~~~~~Ls~~~------g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gVV~aSaGNha 77 (499)
T TIGR01124 5 AILTARVYEAAQ-ETPLQKAAKLSERL------GNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIAASAGNHA 77 (499)
T ss_pred HHHHhHhhCccC-CCCeeehHHHHHHh------CCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCEEEEECCCHHH
Confidence 456678888884 79999999999988 78999999999999999999999999887554445578899999999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCC-
Q 021613 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH- 268 (310)
Q Consensus 190 ~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~h- 268 (310)
+++|++|+++|++|+||||..+ +..|+..++.|||+|+.++. +++++...+.+...+ .+.+|+.+.+ .++
T Consensus 78 ~~vA~aa~~~Gi~~~IvmP~~t---p~~Kv~~~r~~GA~Vvl~g~---~~d~a~~~a~~la~~--~g~~~i~p~~-~~~~ 148 (499)
T TIGR01124 78 QGVAFSAARLGLKALIVMPETT---PDIKVDAVRGFGGEVVLHGA---NFDDAKAKAIELSQE--KGLTFIHPFD-DPLV 148 (499)
T ss_pred HHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEeCc---CHHHHHHHHHHHHHh--cCCEeeCCCC-ChHH
Confidence 9999999999999999999988 67899999999999999974 688887776654433 2445654332 111
Q ss_pred ------Chhhh------hcccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 269 ------PYPMM------VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 269 ------p~~~i------v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
...|+ ..|++++|+|+||+.+|+..++++.++ .++++.|.
T Consensus 149 i~G~gtig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~ 202 (499)
T TIGR01124 149 IAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPT 202 (499)
T ss_pred HHhhHHHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 01122 246788999999999999999999887 66776664
No 35
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=99.97 E-value=1e-30 Score=250.47 Aligned_cols=178 Identities=25% Similarity=0.245 Sum_probs=151.4
Q ss_pred HHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHH
Q 021613 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (310)
Q Consensus 115 ~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~ 194 (310)
.+++.+ ..|||.++-.|++.+ |.++|||+|++||+||||.||+.+++....++++..+|+++|+||||+|+|+
T Consensus 59 ~i~~~~-~~TPl~~s~~lS~~~------g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~~gViasSaGNha~a~Ay 131 (457)
T KOG1250|consen 59 KIYPVI-VETPLLKSVALSKKA------GMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKKAGVIASSAGNHAQAAAY 131 (457)
T ss_pred ccccce-ecccchhhhhhhhhc------CCceEEEehhcccccceehhhHHHHHHHHHHhhhcCceEEecCccHHHHHHH
Confidence 566766 469999999999988 8999999999999999999999999998888887778899999999999999
Q ss_pred HHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCCh----
Q 021613 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY---- 270 (310)
Q Consensus 195 aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~---- 270 (310)
+|+++|++++||||..+ +..|+++++.+||+|+..+. ++++|...|.+...++ +..||.+.+ ||+
T Consensus 132 aa~~LgipaTIVmP~~t---p~~kiq~~~nlGA~Vil~G~---~~deAk~~a~~lAke~--gl~yI~pfD---hP~I~aG 200 (457)
T KOG1250|consen 132 AARKLGIPATIVMPVAT---PLMKIQRCRNLGATVILSGE---DWDEAKAFAKRLAKEN--GLTYIPPFD---HPDIWAG 200 (457)
T ss_pred HHHhcCCceEEEecCCC---hHHHHHHHhccCCEEEEecc---cHHHHHHHHHHHHHhc--CceecCCCC---CchhhcC
Confidence 99999999999999998 68899999999999999984 6899988887776555 677887665 543
Q ss_pred -----hhhhcc------cceeccchHHHHHHHHHHHHHhCC--ccccccCccC
Q 021613 271 -----PMMVRD------FHATSIGEMGWETRCADCMRWWWF--KCHGSLPRIC 310 (310)
Q Consensus 271 -----~~iv~d------~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr~~ 310 (310)
-+|.++ .+.+|||.||+++||.+++++.++ .+||..+.-|
T Consensus 201 qgTig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a 253 (457)
T KOG1250|consen 201 QGTIGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGA 253 (457)
T ss_pred cchHHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCc
Confidence 122222 357889999999999999999998 6677665433
No 36
>PRK09224 threonine dehydratase; Reviewed
Probab=99.97 E-value=4.2e-30 Score=259.05 Aligned_cols=181 Identities=24% Similarity=0.266 Sum_probs=148.2
Q ss_pred HHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHH
Q 021613 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189 (310)
Q Consensus 110 ~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg 189 (310)
+.+..++.+.++ +|||+++++|++.+ |.+||+|+|++|||||||+|+|.+.+..+.+....++|+++|+||||
T Consensus 8 ~~~~~~v~~~~~-~TPL~~~~~Ls~~~------g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gvV~aSaGNha 80 (504)
T PRK09224 8 KILTARVYDVAQ-ETPLEKAPKLSARL------GNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVITASAGNHA 80 (504)
T ss_pred HHHHHHhcCcCC-CCCceehhHhHHHh------CCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcCCEEEEECcCHHH
Confidence 467778888885 79999999999988 78999999999999999999999999887654444578899999999
Q ss_pred HHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCC
Q 021613 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP 269 (310)
Q Consensus 190 ~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp 269 (310)
+++|++|+++|++|+||||..+ +..|++.++.|||+|+.++. +++++.+.+.+...+ .+.+|+.+.+ +|
T Consensus 81 ~avA~aa~~lGi~~~IvmP~~t---p~~K~~~~r~~GA~Vi~~g~---~~~~a~~~a~~l~~~--~g~~~v~~f~---~~ 149 (504)
T PRK09224 81 QGVALSAARLGIKAVIVMPVTT---PDIKVDAVRAFGGEVVLHGD---SFDEAYAHAIELAEE--EGLTFIHPFD---DP 149 (504)
T ss_pred HHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC---CHHHHHHHHHHHHHh--cCCEEeCCCC---Cc
Confidence 9999999999999999999987 67899999999999999974 688888777655433 3456664332 21
Q ss_pred h---------hhh------hcccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 270 Y---------PMM------VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 270 ~---------~~i------v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
+ .++ .+|++++|+|+||+.+|+..++++.++ .+++..|.
T Consensus 150 ~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~ 205 (504)
T PRK09224 150 DVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPE 205 (504)
T ss_pred HHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 1 122 157788999999999999999999887 66666553
No 37
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=99.97 E-value=4.9e-30 Score=242.26 Aligned_cols=178 Identities=23% Similarity=0.207 Sum_probs=139.6
Q ss_pred hhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC---CeEEEecCcchHHHHHHH
Q 021613 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVATAT 194 (310)
Q Consensus 118 ~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhg~AlA~ 194 (310)
+++| +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+.|. ...|+++|+||||+|+|+
T Consensus 3 ~~vg-~TPL~~~~~l~~~~------g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~ 75 (299)
T TIGR01136 3 ELIG-NTPLVRLNRLAPGC------DARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAM 75 (299)
T ss_pred cccC-CCceEEccccCCCC------CceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHH
Confidence 4676 59999999999876 6899999999999999999999999999988876 235789999999999999
Q ss_pred HHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCC-----CC-
Q 021613 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAG-----PH- 268 (310)
Q Consensus 195 aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~-----~h- 268 (310)
+|+++|++|+||||+.. +..|+++|+.+||+|+.++.. .+++++.+.+.+...++ ..+|+.....+ .|
T Consensus 76 ~a~~~G~~~~i~vp~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~g~ 149 (299)
T TIGR01136 76 VAAAKGYKLILTMPETM---SLERRKLLRAYGAELILTPAE-EGMKGAIDKAEELAAET--NKYVMLDQFENPANPEAHY 149 (299)
T ss_pred HHHHcCCcEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHhhC--CCeEecCCCCCchhHHHHH
Confidence 99999999999999987 578999999999999999864 35677766665544332 23333222111 11
Q ss_pred --Chhhh------hcccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 269 --PYPMM------VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 269 --p~~~i------v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
...|+ .+|.+++++|+||+.+|+..+|+++++ .+++..|.
T Consensus 150 ~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~ 199 (299)
T TIGR01136 150 KTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPA 199 (299)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 11222 246678899999999999999999876 55666554
No 38
>PLN02565 cysteine synthase
Probab=99.97 E-value=4.8e-30 Score=245.43 Aligned_cols=180 Identities=20% Similarity=0.203 Sum_probs=139.3
Q ss_pred HhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC-C---eEEEecCcchHHHH
Q 021613 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK-T---RIIAETGAGQHGVA 191 (310)
Q Consensus 116 l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~-~---~~Vv~aSsGNhg~A 191 (310)
+..++| +|||++++.++..+ +.+||+|+|++|||||||||+|.+++..+.+.|. . ..|+++|+||||+|
T Consensus 9 ~~~~ig-~TPLv~l~~l~~~~------~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~a 81 (322)
T PLN02565 9 VTELIG-KTPLVYLNNVVDGC------VARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIG 81 (322)
T ss_pred HHHHhC-CCceEEccccCCCC------CceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHH
Confidence 456786 59999998876543 5799999999999999999999999999988764 1 34789999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCC-CC-
Q 021613 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGP-HP- 269 (310)
Q Consensus 192 lA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~-hp- 269 (310)
+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++.. .+++++.+.+.+.. ++.++.+|+.... ++ +|
T Consensus 82 lA~~a~~~G~~~~ivvp~~~---~~~k~~~i~~~GA~V~~~~~~-~~~~~~~~~a~~l~-~~~~~~~~~~q~~-n~~n~~ 155 (322)
T PLN02565 82 LAFMAAAKGYKLIITMPASM---SLERRIILLAFGAELVLTDPA-KGMKGAVQKAEEIL-AKTPNSYILQQFE-NPANPK 155 (322)
T ss_pred HHHHHHHcCCeEEEEeCCCC---cHHHHHHHHHcCCEEEEeCCC-CCcHHHHHHHHHHH-HhCCCcEeecccC-CHhHHH
Confidence 99999999999999999987 688999999999999999864 24456665554433 3322444443322 11 11
Q ss_pred ------hhhhh------cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 270 ------YPMMV------RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 270 ------~~~iv------~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
..+++ +|++++++||||+.+|+.++|+++++ .+++..|.
T Consensus 156 ~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~ 208 (322)
T PLN02565 156 IHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPV 208 (322)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 12332 46678899999999999999999987 66666664
No 39
>PRK06381 threonine synthase; Validated
Probab=99.97 E-value=5.4e-30 Score=243.88 Aligned_cols=171 Identities=24% Similarity=0.198 Sum_probs=135.8
Q ss_pred HHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHH
Q 021613 113 SGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVAT 192 (310)
Q Consensus 113 ~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~Al 192 (310)
...-...+|+ |||+++++|++.+ +..+||+|+|++|||||||+|++.+++..|++.|.+ .|+++|+||||+|+
T Consensus 6 ~~~~~~~~g~-TPL~~~~~l~~~~-----G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~-~lv~aSsGN~g~al 78 (319)
T PRK06381 6 SSSEEKPPGG-TPLLRARKLEEEL-----GLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYS-GITVGTCGNYGASI 78 (319)
T ss_pred hccccccCCC-CceeEhHhhHHhc-----CCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCCC-EEEEeCCcHHHHHH
Confidence 3333456874 9999999999887 136999999999999999999999999999999986 46789999999999
Q ss_pred HHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCC----
Q 021613 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH---- 268 (310)
Q Consensus 193 A~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~h---- 268 (310)
|++|+.+|++|+||||... +..|+++|+.|||+|+.++. +++++.+.+.+...+ ++.+|+.....+++
T Consensus 79 A~~aa~~G~~~~ivvp~~~---~~~~~~~l~~~GA~V~~~~~---~~~~~~~~a~~~~~~--~~~~~~~~~~~n~~~~~~ 150 (319)
T PRK06381 79 AYFARLYGLKAVIFIPRSY---SNSRVKEMEKYGAEIIYVDG---KYEEAVERSRKFAKE--NGIYDANPGSVNSVVDIE 150 (319)
T ss_pred HHHHHHcCCcEEEEECCCC---CHHHHHHHHHcCCEEEEcCC---CHHHHHHHHHHHHHH--cCcEecCCCCCCcchHhh
Confidence 9999999999999999986 57899999999999999985 467776666555433 23334322211210
Q ss_pred ----Chhhh------hcccceeccchHHHHHHHHHHHHHh
Q 021613 269 ----PYPMM------VRDFHATSIGEMGWETRCADCMRWW 298 (310)
Q Consensus 269 ----p~~~i------v~d~~~v~vGT~G~e~gi~q~l~~~ 298 (310)
...|+ .+|++++++||||+.+|+..+|+++
T Consensus 151 G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~ 190 (319)
T PRK06381 151 AYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRL 190 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHH
Confidence 11122 3577889999999999999999987
No 40
>PLN03013 cysteine synthase
Probab=99.97 E-value=8.1e-30 Score=251.23 Aligned_cols=182 Identities=18% Similarity=0.171 Sum_probs=142.6
Q ss_pred HHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC---C-eEEEecCcchHHH
Q 021613 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---T-RIIAETGAGQHGV 190 (310)
Q Consensus 115 ~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~-~~Vv~aSsGNhg~ 190 (310)
.+.+.+|+ |||++++.+++.. +.+||+|+|++|||||||||+|.+++..+++.|. . ..||++|+||||+
T Consensus 116 ~i~~~iG~-TPLv~l~~l~~~~------g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ 188 (429)
T PLN03013 116 NVSQLIGK-TPMVYLNSIAKGC------VANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGI 188 (429)
T ss_pred HHHhcCCC-CCeEECccccccc------CCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHH
Confidence 56777874 9999999998765 6899999999999999999999999999988875 1 3588999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCC----CC
Q 021613 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSV----AG 266 (310)
Q Consensus 191 AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~----~~ 266 (310)
|+|++|+.+|++++||||+.. ++.|+++|+.|||+|+.++.. ..++++.+.+.+.. ++..+.+|+.... ..
T Consensus 189 ALA~~a~~~G~~~~VvvP~~~---s~~K~~~ira~GAeVi~v~~~-~~~~~a~~~A~ela-~~~~g~~~~~qy~Np~n~~ 263 (429)
T PLN03013 189 GLAFIAASRGYRLILTMPASM---SMERRVLLKAFGAELVLTDPA-KGMTGAVQKAEEIL-KNTPDAYMLQQFDNPANPK 263 (429)
T ss_pred HHHHHHHHcCCCEEEEECCCC---cHHHHHHHHHcCCEEEEECCC-CChHHHHHHHHHHH-hhcCCeEeCCCCCCHHHHH
Confidence 999999999999999999987 688999999999999999864 24555555555443 3322334432221 00
Q ss_pred CC---Chhhhh------cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 267 PH---PYPMMV------RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 267 ~h---p~~~iv------~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
.| ..+||+ +|+.++++||||+.+|+.++|++.++ .++++.|.
T Consensus 264 ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~ 316 (429)
T PLN03013 264 IHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPT 316 (429)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeC
Confidence 12 124554 35677889999999999999999888 46776664
No 41
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=99.97 E-value=9.6e-30 Score=251.06 Aligned_cols=199 Identities=34% Similarity=0.389 Sum_probs=147.4
Q ss_pred hHHHHHHHHHHhcCChhHH--------HHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHH
Q 021613 91 ALSELESALHKLADDRDFQ--------EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKIN 162 (310)
Q Consensus 91 ~~~~i~~a~~~~~~d~~f~--------~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~R 162 (310)
..++|..-+.+.+.+.|+. +++.+.+ ..+|++|||+++++|++.++ .+.+||+|+|++|||||||+|
T Consensus 29 ~~~~~~~~~~~~~~~~e~~~~r~~~~~~~v~~~~-~l~g~pTPL~r~~~L~~~lg----~~~~Iy~K~E~~nPtGS~K~R 103 (419)
T TIGR01415 29 AIEKLKRIFPEKLLEQEVSGERWIKIPGEVLKRY-AQIGRPTPLIRAKGLEELLG----TPARIYYKYESVSPTGSHKIN 103 (419)
T ss_pred CHHHHhhhCcHHHHhccccHhhHHhhHHHHHHHH-HhcCCCCCeEEccchhhhhC----CCceEEEEECCCCCCCCcHHH
Confidence 4556666666555544443 2333332 23667999999999998872 136999999999999999999
Q ss_pred HHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCC----
Q 021613 163 NAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTAT---- 238 (310)
Q Consensus 163 ga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~---- 238 (310)
++.+++..+++.|.+++|+++|+||||+|+|++|+.+|++|+||||..+...++.|+.+|+.|||+|+.++.+...
T Consensus 104 ~A~~~~~~a~~~G~~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~ 183 (419)
T TIGR01415 104 TAIAQAYYAKIEGAKRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGRE 183 (419)
T ss_pred HHHHHHHHHHHcCCCeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHH
Confidence 9999999999999988777789999999999999999999999999864333467889999999999999874211
Q ss_pred -----------HHHHHHHHHHHHHHccCCceeecCCCCCC---C---Chhhh---------hcccceeccchHHHHHHHH
Q 021613 239 -----------LKDATSEAIRDWVTNVETTHYILGSVAGP---H---PYPMM---------VRDFHATSIGEMGWETRCA 292 (310)
Q Consensus 239 -----------~~da~~~a~~~~~~~~~~~~Yi~gs~~~~---h---p~~~i---------v~d~~~v~vGT~G~e~gi~ 292 (310)
+..+++++.+...++ ++..|+.++..++ | ...|+ .+|++++++|+||+.+|+.
T Consensus 184 ~~~~~p~~~gsl~~ai~~a~e~a~~~-~~~~y~~~~~~n~~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~ 262 (419)
T TIGR01415 184 VLKEDPDHPGSLGIAISEAIEYALSD-EDTKYSLGSVLNHVLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLA 262 (419)
T ss_pred hhhcccccccchHHHHHHHHHHHHhC-CCCEEEeCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHH
Confidence 111345555554443 3456777775431 1 11122 2678889999999999998
Q ss_pred HHH
Q 021613 293 DCM 295 (310)
Q Consensus 293 q~l 295 (310)
..|
T Consensus 263 ~~f 265 (419)
T TIGR01415 263 FPF 265 (419)
T ss_pred HHH
Confidence 776
No 42
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=99.97 E-value=2.1e-29 Score=236.86 Aligned_cols=173 Identities=25% Similarity=0.223 Sum_probs=138.6
Q ss_pred CCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCC---eEEEecCcchHHHHHHHHHHHc
Q 021613 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKT---RIIAETGAGQHGVATATVCARF 199 (310)
Q Consensus 123 ~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~---~~Vv~aSsGNhg~AlA~aaa~~ 199 (310)
+|||+++++|++.. +.+||+|+|++|||||||+|++.+.+..+.+.|+. ..|+++|+||||+|+|++|+++
T Consensus 2 ~TPl~~~~~l~~~~------g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~ 75 (291)
T cd01561 2 NTPLVRLNRLSPGT------GAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAK 75 (291)
T ss_pred CCCEEEccccCCCC------CCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHc
Confidence 59999999999866 78999999999999999999999999999988862 4678999999999999999999
Q ss_pred CCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCC-CCHHHHHHHHHHHHHHccCCceeecCCCCCCCCh--------
Q 021613 200 GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT-ATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY-------- 270 (310)
Q Consensus 200 Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~-~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~-------- 270 (310)
|++|+||||... ++.|+++|+.+||+|+.++... .+++++.+.+.+.. ++.++.+|..+.. +|+
T Consensus 76 G~~~~i~vp~~~---~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~---~p~~~~g~~~t 148 (291)
T cd01561 76 GYRFIIVMPETM---SEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELA-AETPNAFWLNQFE---NPANPEAHYET 148 (291)
T ss_pred CCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHH-hhCCCcEEecCCC---CchHHHHHHHH
Confidence 999999999986 5789999999999999998753 24567666655543 3323445544321 221
Q ss_pred --hhh------hcccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 271 --PMM------VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 271 --~~i------v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
.|+ .+|++++++|+||+.+|+..+|+++++ .++++.|.
T Consensus 149 ~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~ 196 (291)
T cd01561 149 TAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPV 196 (291)
T ss_pred HHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 222 356678899999999999999999876 55665554
No 43
>PLN00011 cysteine synthase
Probab=99.97 E-value=2.8e-29 Score=240.01 Aligned_cols=181 Identities=20% Similarity=0.193 Sum_probs=137.4
Q ss_pred HhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC----CeEEEecCcchHHHH
Q 021613 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGVA 191 (310)
Q Consensus 116 l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~----~~~Vv~aSsGNhg~A 191 (310)
+.+++| +|||+++++++... +.+||+|+|++|||||||+|++.+++..+.+.|. ...|+++|+||||+|
T Consensus 11 ~~~~~g-~TPl~~l~~l~~~~------g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~a 83 (323)
T PLN00011 11 VTELIG-NTPMVYLNNIVDGC------VARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIG 83 (323)
T ss_pred HHHHhC-CCceEEccccCCCC------CceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHH
Confidence 344676 69999999887644 5799999999999999999999999999998873 246789999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCC--
Q 021613 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP-- 269 (310)
Q Consensus 192 lA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp-- 269 (310)
+|++|+.+|++|+||||... ++.|+++|+.+||+|+.++... ..++..+.+.+.. ++..+.+|+.+.....+|
T Consensus 84 lA~~a~~~G~~~~ivvp~~~---~~~k~~~i~~~GA~V~~~~~~~-~~~~~~~~a~~l~-~~~~~~~~~~~~~n~~n~~~ 158 (323)
T PLN00011 84 LACIGAARGYKVILVMPSTM---SLERRIILRALGAEVHLTDQSI-GLKGMLEKAEEIL-SKTPGGYIPQQFENPANPEI 158 (323)
T ss_pred HHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEECCCc-ChHHHHHHHHHHH-HhCCCeEEeccccCCccHHH
Confidence 99999999999999999987 5789999999999999998642 3333344443332 221233333332111111
Q ss_pred -h----hhhh------cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 270 -Y----PMMV------RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 270 -~----~~iv------~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
| .|++ +|++++++||||+.+|+.++|+++++ .+++..|.
T Consensus 159 ~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~ 210 (323)
T PLN00011 159 HYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPV 210 (323)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecC
Confidence 1 3332 46678899999999999999999876 66666664
No 44
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=99.97 E-value=2.3e-29 Score=237.52 Aligned_cols=178 Identities=23% Similarity=0.272 Sum_probs=136.9
Q ss_pred hhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC---CeEEEecCcchHHHHHHH
Q 021613 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVATAT 194 (310)
Q Consensus 118 ~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhg~AlA~ 194 (310)
+++| +|||+++++ ...+ +.+||+|+|++|||||||+|++.+++..+.+.|+ ...|+++|+||||+|+|+
T Consensus 3 ~~~g-~TPl~~~~~-~~~~------g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~ 74 (298)
T TIGR01139 3 ELIG-NTPLVRLNR-IEGC------NANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAM 74 (298)
T ss_pred cccC-CCceEEccc-cCCC------CceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHH
Confidence 4676 599999998 4444 6899999999999999999999999999998876 235789999999999999
Q ss_pred HHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCC-----C-
Q 021613 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGP-----H- 268 (310)
Q Consensus 195 aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~-----h- 268 (310)
+|+++|++|+||||+.. ++.|+++|+.+||+|+.++.. .+++++.+.+.+ ..++..+.+|.+....++ |
T Consensus 75 ~a~~~Gl~~~i~vp~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a~~-~~~~~~~~~~~~~~~~n~~~~~~g~ 149 (298)
T TIGR01139 75 VAAARGYKLILTMPETM---SIERRKLLKAYGAELVLTPGA-EGMKGAIAKAEE-IAASTPNSYFMLQQFENPANPEIHR 149 (298)
T ss_pred HHHHcCCeEEEEeCCcc---CHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHH-HHHhCCCcEEcccccCCcccHHHHH
Confidence 99999999999999987 577999999999999999864 234566665544 344433334333222111 1
Q ss_pred --Chhhhh------cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 269 --PYPMMV------RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 269 --p~~~iv------~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
...|++ +|.+++++|+||+.+|+.++|+++++ .+++..|.
T Consensus 150 ~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~ 199 (298)
T TIGR01139 150 KTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPA 199 (298)
T ss_pred HHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecC
Confidence 113332 45678899999999999999999877 55665553
No 45
>PRK07591 threonine synthase; Validated
Probab=99.97 E-value=5.9e-30 Score=252.87 Aligned_cols=174 Identities=21% Similarity=0.195 Sum_probs=137.3
Q ss_pred cCCCCCEEEccccchhhcCCCCCC-CeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHH
Q 021613 120 VGRETPLYFAERLTEHYRRPNGGG-PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (310)
Q Consensus 120 vg~~TPL~~~~~Ls~~~~~~~~~g-~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~ 198 (310)
.| .|||+++++|++.+ | .+||+|+|++|||||||||++.+++..|.+.|.+. |+++|+||||+|+|++|++
T Consensus 87 eG-~TPLv~~~~l~~~l------G~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~~~-vv~aSsGN~g~alA~~aa~ 158 (421)
T PRK07591 87 PG-FTPLVKADRLAREL------GLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGFTT-VACASTGNLANSVAAHAAR 158 (421)
T ss_pred CC-CCcceEhHHHHHHh------CCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCCCE-EEEeCCCHHHHHHHHHHHH
Confidence 45 49999999999988 5 59999999999999999999999999999999875 5789999999999999999
Q ss_pred cCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCC----------
Q 021613 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH---------- 268 (310)
Q Consensus 199 ~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~h---------- 268 (310)
+|++|+||||... +..|+.+|+.|||+|+.++. +++++.+.+.+. .++.++.+|.+ .+..+|
T Consensus 159 ~Gl~~~I~vP~~~---~~~k~~~~~~~GA~Vi~v~g---~~d~a~~~a~~~-~~~~~~~~~~n-~~~~p~~ieG~~Tia~ 230 (421)
T PRK07591 159 AGLDSCVFIPADL---EAGKIVGTLVYGPTLVAVDG---NYDDVNRLCSEL-ANEHEGWGFVN-INLRPYYAEGSKTLGY 230 (421)
T ss_pred cCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHHH-HHhcCCEEEec-CCCCcccccchHHHHH
Confidence 9999999999986 57899999999999999985 467765554433 33322323332 222222
Q ss_pred ----ChhhhhcccceeccchHHHHHHHHHHHHHhCC-cccc-ccCcc
Q 021613 269 ----PYPMMVRDFHATSIGEMGWETRCADCMRWWWF-KCHG-SLPRI 309 (310)
Q Consensus 269 ----p~~~iv~d~~~v~vGT~G~e~gi~q~l~~~~~-~~~~-~~Pr~ 309 (310)
++++.++|++++|+|+||+.+|+.++|+++.. |+++ ..||+
T Consensus 231 Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~pri 277 (421)
T PRK07591 231 EVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRV 277 (421)
T ss_pred HHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceE
Confidence 11112478889999999999999999998754 6665 44554
No 46
>PRK08197 threonine synthase; Validated
Probab=99.97 E-value=5.4e-30 Score=251.03 Aligned_cols=177 Identities=23% Similarity=0.208 Sum_probs=137.5
Q ss_pred cCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHc
Q 021613 120 VGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARF 199 (310)
Q Consensus 120 vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~ 199 (310)
.| .|||+++++|++.+| ..+||+|+|++|||||||||++.+++..|.+.|.+. |+++|+||||+|+|++|+++
T Consensus 77 eG-~TPL~~~~~l~~~~G-----~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~~-vv~aSsGN~g~alA~~aa~~ 149 (394)
T PRK08197 77 EG-MTPLLPLPRLGKALG-----IGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGVKH-LAMPTNGNAGAAWAAYAARA 149 (394)
T ss_pred cC-CCCceEhHHHHHHhC-----CCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCCCE-EEEeCCcHHHHHHHHHHHHc
Confidence 45 599999999998871 269999999999999999999999999999999864 67899999999999999999
Q ss_pred CCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc-------cCCceeecCCCCCC-C---
Q 021613 200 GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN-------VETTHYILGSVAGP-H--- 268 (310)
Q Consensus 200 Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~-------~~~~~Yi~gs~~~~-h--- 268 (310)
|++|+||||++. ++.|+.+|+.|||+|+.++. +++++.+.+.+...++ +.|++++.|..... .
T Consensus 150 G~~~~v~vp~~~---~~~k~~~~~~~GA~Vi~v~~---~~~~~~~~a~~~~~~~g~~~~~~~~np~~ieG~~t~a~Ei~e 223 (394)
T PRK08197 150 GIRATIFMPADA---PEITRLECALAGAELYLVDG---LISDAGKIVAEAVAEYGWFDVSTLKEPYRIEGKKTMGLELAE 223 (394)
T ss_pred CCcEEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHHHHHhcCcccccCCCCccchhcHHHHHHHHHH
Confidence 999999999987 57899999999999999985 4666655544432221 11222222211100 0
Q ss_pred ChhhhhcccceeccchHHHHHHHHHHHHHhCC-cccc-ccCcc
Q 021613 269 PYPMMVRDFHATSIGEMGWETRCADCMRWWWF-KCHG-SLPRI 309 (310)
Q Consensus 269 p~~~iv~d~~~v~vGT~G~e~gi~q~l~~~~~-~~~~-~~Pr~ 309 (310)
+++..++|++++|+|+||+.+|+.++|+++.. ||++ ..|||
T Consensus 224 Ql~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~i 266 (394)
T PRK08197 224 QLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRL 266 (394)
T ss_pred HcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeE
Confidence 11112478889999999999999999999764 7774 77765
No 47
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=99.97 E-value=2.1e-29 Score=240.29 Aligned_cols=175 Identities=18% Similarity=0.142 Sum_probs=137.7
Q ss_pred CCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC--CeEEEecCcchHHHHHHHHHHHcC
Q 021613 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK--TRIIAETGAGQHGVATATVCARFG 200 (310)
Q Consensus 123 ~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~--~~~Vv~aSsGNhg~AlA~aaa~~G 200 (310)
+|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.++|. .+.|+++|+||||+|+|++|+.+|
T Consensus 1 ~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G 74 (316)
T cd06448 1 KTPLIESTALSKTA------GCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLG 74 (316)
T ss_pred CCCccccchhhHhh------CCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcC
Confidence 49999999999877 6899999999999999999999999999998883 456789999999999999999999
Q ss_pred CeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCC----CCCC--Chhhh-
Q 021613 201 LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSV----AGPH--PYPMM- 273 (310)
Q Consensus 201 i~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~----~~~h--p~~~i- 273 (310)
++|+||||... ++.|+++|+.|||+|+.++.. .++++. +..+...++.++.+|+.... ...| ...|+
T Consensus 75 ~~~~iv~p~~~---~~~k~~~l~~~GA~v~~~~~~--~~~~~~-~~~~~l~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~ 148 (316)
T cd06448 75 VPCTIVVPEST---KPRVVEKLRDEGATVVVHGKV--WWEADN-YLREELAENDPGPVYVHPFDDPLIWEGHSSMVDEIA 148 (316)
T ss_pred CCEEEEECCCC---CHHHHHHHHHcCCEEEEECCc--hHHHHH-HHHHHHHhccCCcEEeCCCCCchhhccccHHHHHHH
Confidence 99999999987 678999999999999999853 144443 32333344432566765431 0001 12222
Q ss_pred -------hcccceeccchHHHHHHHHHHHHHhC-C--ccccccCcc
Q 021613 274 -------VRDFHATSIGEMGWETRCADCMRWWW-F--KCHGSLPRI 309 (310)
Q Consensus 274 -------v~d~~~v~vGT~G~e~gi~q~l~~~~-~--~~~~~~Pr~ 309 (310)
.+|++++++||||+.+|+.++|++.+ + .+++..|.-
T Consensus 149 ~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g 194 (316)
T cd06448 149 QQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEG 194 (316)
T ss_pred HHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 25778899999999999999999986 4 666666643
No 48
>PRK02991 D-serine dehydratase; Provisional
Probab=99.97 E-value=3.1e-29 Score=248.74 Aligned_cols=198 Identities=16% Similarity=0.119 Sum_probs=146.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhhh----------------cCCCCCEEEccccchhhcC--CCCCCCeEEEEec
Q 021613 90 YALSELESALHKLADDRDFQEELSGILRDY----------------VGRETPLYFAERLTEHYRR--PNGGGPHIYLKRE 151 (310)
Q Consensus 90 ~~~~~i~~a~~~~~~d~~f~~el~~~l~~~----------------vg~~TPL~~~~~Ls~~~~~--~~~~g~~I~lK~E 151 (310)
.++++|.+|++ +++++ ++ +|||++++.|++.++. ....+.+||+|+|
T Consensus 41 ~~~~di~~A~~--------------~i~~~~~~~~~~~~~~~~~~~~~-~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E 105 (441)
T PRK02991 41 LTEADVQDAEA--------------RLKRFAPYLAKAFPETAATGGII-ESPLVAIPAMQKALEKEYGQPISGRLLLKKD 105 (441)
T ss_pred CCHHHHHHHHH--------------HHHhhhhhhhhhCccccccCCcc-CCCceehHHHHHHhcccccCCcCceEEEEEc
Confidence 46889999988 55554 64 6999999999987610 0000269999999
Q ss_pred CCCC-CCChHHHHHHHHHHHh-----hhcCC--------------------CeEEEecCcchHHHHHHHHHHHcCCeEEE
Q 021613 152 DLNH-TGAHKINNAVGQALLA-----KRLGK--------------------TRIIAETGAGQHGVATATVCARFGLQCIV 205 (310)
Q Consensus 152 ~lnp-TGSfK~Rga~~~l~~a-----~~~g~--------------------~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~I 205 (310)
++|| |||||+|++.+++..+ ++.|. .++|+++|+||||+|+|++|+++|++|+|
T Consensus 106 ~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tI 185 (441)
T PRK02991 106 SHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTV 185 (441)
T ss_pred CCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEE
Confidence 9999 9999999999998753 34442 13688999999999999999999999999
Q ss_pred EeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCC---CCCC---Chhhhh-----
Q 021613 206 YMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSV---AGPH---PYPMMV----- 274 (310)
Q Consensus 206 vmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~---~~~h---p~~~iv----- 274 (310)
|||++. ++.|+++|+.|||+|+.++. +++++.+.+.+... +..+.+|+...+ ...+ ...|++
T Consensus 186 vvP~~a---~~~K~~~ir~~GAeVi~~~~---~~~~a~~~A~~la~-~~~~~~~~~~~~~~~~iaG~~Tig~EI~eQl~~ 258 (441)
T PRK02991 186 HMSADA---RQWKKDKLRSHGVTVVEYEG---DYGVAVEEGRKAAE-SDPNCYFIDDENSRTLFLGYAVAGLRLKAQLAE 258 (441)
T ss_pred EECCCC---CHHHHHHHHhCCCEEEEECC---CHHHHHHHHHHHHH-hcCCeEeCCCCCchhHHHhHHHHHHHHHHHhhh
Confidence 999987 68999999999999999985 57777666655433 322344443221 0000 012222
Q ss_pred ---------cccceeccchHHHHHHHHHHHHHh-CC--ccccccCcc
Q 021613 275 ---------RDFHATSIGEMGWETRCADCMRWW-WF--KCHGSLPRI 309 (310)
Q Consensus 275 ---------~d~~~v~vGT~G~e~gi~q~l~~~-~~--~~~~~~Pr~ 309 (310)
+|++++++|+||+.+|+.++|+++ ++ .+++..|.-
T Consensus 259 ~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~g 305 (441)
T PRK02991 259 QGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTH 305 (441)
T ss_pred ccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCC
Confidence 335678999999999999999987 44 566666653
No 49
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=99.97 E-value=1.7e-29 Score=249.88 Aligned_cols=210 Identities=18% Similarity=0.123 Sum_probs=149.6
Q ss_pred hhhhHHHHHHHHHHhcC-----ChhHHHHHHHHHhhhcCCCCCEEEccccchhhcC--CCCCCCeEEEEecCCCC-CCCh
Q 021613 88 LMYALSELESALHKLAD-----DRDFQEELSGILRDYVGRETPLYFAERLTEHYRR--PNGGGPHIYLKREDLNH-TGAH 159 (310)
Q Consensus 88 l~~~~~~i~~a~~~~~~-----d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~--~~~~g~~I~lK~E~lnp-TGSf 159 (310)
+..+++||.+|..+... ...|++.-.. ..++ +|||+++++|++.++. ....+.+||+|+|++|| ||||
T Consensus 34 ~~~~~~~i~~a~~~~~~~~~~~~~~fp~~~~~---~~~~-~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSf 109 (431)
T TIGR02035 34 VGLKAQEVAEAEARLQRFAPYIAKVFPETAAT---GGII-ESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSI 109 (431)
T ss_pred CCCCHHHHHHHHHHHHhhhhhHHHhCcccccc---CCcc-CCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCc
Confidence 34688999888873321 1122211110 1454 6999999999885510 00014699999999999 9999
Q ss_pred HHHHHHHHHHH-----hhhcCC--------------------CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhc
Q 021613 160 KINNAVGQALL-----AKRLGK--------------------TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMER 214 (310)
Q Consensus 160 K~Rga~~~l~~-----a~~~g~--------------------~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~ 214 (310)
|+|++.+++.. +.+.|. +++|+++|+||||+++|++|+.+|++|+||||++.
T Consensus 110 KdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a--- 186 (431)
T TIGR02035 110 KARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADA--- 186 (431)
T ss_pred HHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---
Confidence 99999998864 445554 25788999999999999999999999999999998
Q ss_pred hHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCC---CCC---Chhhhh--------------
Q 021613 215 QALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVA---GPH---PYPMMV-------------- 274 (310)
Q Consensus 215 ~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~---~~h---p~~~iv-------------- 274 (310)
++.|+++|+.|||+|+.++. +++++...+.+...+ ..+.+|+...+. ..| ...+|+
T Consensus 187 ~~~K~~~ir~~GAeVv~~~~---~~~~a~~~A~~la~~-~~~~~~~d~~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~ 262 (431)
T TIGR02035 187 KQWKKDKLRSKGVTVVEYES---DYGVAVEEGRKNADA-DPMCYFVDDENSRNLFLGYAVAASRLKKQFDKKGIVVDKEH 262 (431)
T ss_pred CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHHHHHh-cCCeEECCCCCcccHHhhHHHHHHHHHHhhhccccccccCC
Confidence 78999999999999999985 578887776664433 233444432211 111 122332
Q ss_pred cccceeccchHHHHHHHHHHHHHh-CC--ccccccCc
Q 021613 275 RDFHATSIGEMGWETRCADCMRWW-WF--KCHGSLPR 308 (310)
Q Consensus 275 ~d~~~v~vGT~G~e~gi~q~l~~~-~~--~~~~~~Pr 308 (310)
+|++.+++|.||+..|+.++|+++ ++ .+++..|.
T Consensus 263 pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~ 299 (431)
T TIGR02035 263 PLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPT 299 (431)
T ss_pred CCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeC
Confidence 234578899999999999999997 54 56666664
No 50
>PRK10717 cysteine synthase A; Provisional
Probab=99.97 E-value=4.3e-29 Score=239.01 Aligned_cols=184 Identities=24% Similarity=0.210 Sum_probs=136.4
Q ss_pred HHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC---CeEEEecCcchHHHH
Q 021613 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVA 191 (310)
Q Consensus 115 ~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhg~A 191 (310)
.+...+| +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++..+.+.|+ ...|+++|+||||+|
T Consensus 6 ~~~~~~g-~TPL~~~~~l~~~~------g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~a 78 (330)
T PRK10717 6 DVSDTIG-NTPLIRLNRASEAT------GCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIG 78 (330)
T ss_pred hHHHHhC-CCceEEccccCCCC------CCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHH
Confidence 3456676 69999999999877 6899999999999999999999999999988875 245889999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC-CC---CHHHHHHHHHHHHHHccCCceeecCCCCCC
Q 021613 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG-TA---TLKDATSEAIRDWVTNVETTHYILGSVAGP 267 (310)
Q Consensus 192 lA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~-~~---~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~ 267 (310)
+|++|+++|++|+||||... ++.|+++|+.+||+|+.++.. .+ ++.+...+..+....+..+.+|..+...++
T Consensus 79 lA~~a~~~G~~~~vv~p~~~---~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 155 (330)
T PRK10717 79 LALVAAARGYKTVIVMPETQ---SQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNP 155 (330)
T ss_pred HHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCCh
Confidence 99999999999999999987 578999999999999999863 11 122211111122222222223332221111
Q ss_pred -----C---Chhhhh------cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 268 -----H---PYPMMV------RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 268 -----h---p~~~iv------~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
| ...||+ .|++++++||||+.+|+.++|+++++ .+++..|.
T Consensus 156 ~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~ 212 (330)
T PRK10717 156 ANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPT 212 (330)
T ss_pred hhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 1 122332 46678899999999999999999876 45666554
No 51
>PRK06352 threonine synthase; Validated
Probab=99.97 E-value=2.5e-29 Score=243.03 Aligned_cols=175 Identities=21% Similarity=0.238 Sum_probs=135.0
Q ss_pred hcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHH
Q 021613 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (310)
Q Consensus 119 ~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~ 198 (310)
.+| +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+.++|.+ .|+++|+||||+|+|++|+.
T Consensus 25 ~~G-~TPL~~~~~l~~~~------g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~-~vV~aSsGN~G~AlA~~aa~ 96 (351)
T PRK06352 25 AEG-NTPLIPLPNLSKEL------GVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAE-AVICASTGNTSAAAAAYATR 96 (351)
T ss_pred CCC-CCCeeEcHhhHHHh------CCeEEEEecCCCCccChHHHHHHHHHHHHHHCCCC-EEEEECCcHHHHHHHHHHHH
Confidence 356 69999999999877 68999999999999999999999999999998876 57899999999999999999
Q ss_pred cCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCC---CCCCC--Chhhh
Q 021613 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS---VAGPH--PYPMM 273 (310)
Q Consensus 199 ~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs---~~~~h--p~~~i 273 (310)
+|++|+||||+... +..|+.+|+.|||+|+.++. +++++.+.+.+.. ++ ...+++... +...| ...|+
T Consensus 97 ~G~~~~ivvp~~~~--~~~k~~~~~a~GA~V~~~~~---~~~~~~~~a~~~~-~~-~~~~~~~~~n~~~~~G~~t~~~EI 169 (351)
T PRK06352 97 AGLKAYIVIPEGKV--ALGKLAQAVMYGADIISIQG---NFDEALKSVRELA-ET-EAVTLVNSVNPYRLEGQKTAAFEI 169 (351)
T ss_pred cCCcEEEEEeCCCC--cHHHHHHHHhcCCEEEEECC---CHHHHHHHHHHHH-Hh-cCcccccCCCccceeeHHHHHHHH
Confidence 99999999999732 47799999999999999985 4667655544433 22 111222111 10001 12233
Q ss_pred ------hcccceeccchHHHHHHHHHHHHHhCCccccccCc
Q 021613 274 ------VRDFHATSIGEMGWETRCADCMRWWWFKCHGSLPR 308 (310)
Q Consensus 274 ------v~d~~~v~vGT~G~e~gi~q~l~~~~~~~~~~~Pr 308 (310)
.+|++++++|+||+.+|+.++|+++++..+++.||
T Consensus 170 ~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~ 210 (351)
T PRK06352 170 CEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPR 210 (351)
T ss_pred HHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCE
Confidence 35778899999999999999999987632444444
No 52
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=99.97 E-value=3.3e-29 Score=243.72 Aligned_cols=182 Identities=20% Similarity=0.199 Sum_probs=138.7
Q ss_pred HHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC----CeEEEecCcchHHH
Q 021613 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGV 190 (310)
Q Consensus 115 ~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~----~~~Vv~aSsGNhg~ 190 (310)
.+...+| +|||+++++++... +.+||+|+|++|||||||||++.+++..+.+.|. ...|+++|+||||+
T Consensus 52 ~v~~~ig-~TPl~~l~~l~~~~------g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~ 124 (368)
T PLN02556 52 DASQLIG-KTPLVYLNKVTEGC------GAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGI 124 (368)
T ss_pred hHHHhcC-CCccEEcccccccc------CCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHH
Confidence 4566787 59999999998765 6899999999999999999999999999998863 23578999999999
Q ss_pred HHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCC-C---CC
Q 021613 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGS-V---AG 266 (310)
Q Consensus 191 AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs-~---~~ 266 (310)
|+|++|+.+|++|+||||+.. +..|+.+|+.|||+|+.++... .....++++.+...++ ++.+|+... + ..
T Consensus 125 alA~~a~~~G~~~~ivvp~~~---~~~k~~~lr~~GA~Vi~~~~~~-~~~~~~~~a~~l~~~~-~~~~~~~q~~np~~~~ 199 (368)
T PLN02556 125 SLAFMAAMKGYKMILTMPSYT---SLERRVTMRAFGAELVLTDPTK-GMGGTVKKAYELLEST-PDAFMLQQFSNPANTQ 199 (368)
T ss_pred HHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEECCCC-CccHHHHHHHHHHHhc-CCCCccCCCCCHHHHH
Confidence 999999999999999999987 6889999999999999997532 2234444444433322 233333211 1 00
Q ss_pred CC---Chhhhh------cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 267 PH---PYPMMV------RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 267 ~h---p~~~iv------~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
.| ..+||+ .|++++++||||+.+|+.++|++.++ .+++..|.
T Consensus 200 ~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~ 252 (368)
T PLN02556 200 VHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPA 252 (368)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeC
Confidence 12 223443 35567889999999999999999877 55666654
No 53
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.1e-29 Score=237.21 Aligned_cols=182 Identities=25% Similarity=0.235 Sum_probs=144.7
Q ss_pred HhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC---CeEEEecCcchHHHHH
Q 021613 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVAT 192 (310)
Q Consensus 116 l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhg~Al 192 (310)
+.+.+|+ |||+++.+++... +++||+|+|++||+||.|||-|++++..|++.|. ..+||++||||+|+++
T Consensus 5 ~~~~iG~-TPlvrL~~~~~~~------~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~L 77 (300)
T COG0031 5 ILDLIGN-TPLVRLNRLSPGT------GVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIAL 77 (300)
T ss_pred hHHHhCC-CCcEeecccCCCC------CceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHH
Confidence 4556775 9999999988754 6899999999999999999999999999998873 5688999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCce-----eecCCCCCC
Q 021613 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTH-----YILGSVAGP 267 (310)
Q Consensus 193 A~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~-----Yi~gs~~~~ 267 (310)
|++|+.+|+++++|||+.. +..|.++|++|||+|+.++...+.+..+.+.+.+... +.++.. |-+..+...
T Consensus 78 A~vaa~~Gy~~iivmP~~~---S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~-~~p~~~~~~~Qf~NpaN~~a 153 (300)
T COG0031 78 AMVAAAKGYRLIIVMPETM---SQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAA-EIPGYAVWLNQFENPANPEA 153 (300)
T ss_pred HHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHH-hCCCceEchhhcCCCccHHH
Confidence 9999999999999999987 6789999999999999999854446666666544433 323312 222344433
Q ss_pred C---Chhhhhc------ccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 268 H---PYPMMVR------DFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 268 h---p~~~iv~------d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
| +.++|++ |+.+.++||||+++|+.++||+.++ .++++-|.
T Consensus 154 H~~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~ 205 (300)
T COG0031 154 HYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPE 205 (300)
T ss_pred HHhhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCC
Confidence 4 4567764 4456789999999999999999988 55565554
No 54
>PLN02356 phosphateglycerate kinase
Probab=99.96 E-value=1.3e-29 Score=249.57 Aligned_cols=184 Identities=24% Similarity=0.179 Sum_probs=135.4
Q ss_pred HHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC---CeEEEecCcchHHHH
Q 021613 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVA 191 (310)
Q Consensus 115 ~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhg~A 191 (310)
.+.+++| +|||+++++|+... +.+||+|+|++|||||||||++.+++..|.+.|. +.+|+++|+||||+|
T Consensus 46 ~~~~~ig-~TPLv~~~~l~~~~------g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~a 118 (423)
T PLN02356 46 GLIDAIG-NTPLIRINSLSEAT------GCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAIS 118 (423)
T ss_pred hHHhhcC-CCceEECccccccc------CCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHH
Confidence 4566787 59999999998876 7899999999999999999999999999988663 457778999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC----CCCH-HHHH---HHHHHHHHHc----------
Q 021613 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG----TATL-KDAT---SEAIRDWVTN---------- 253 (310)
Q Consensus 192 lA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~----~~~~-~da~---~~a~~~~~~~---------- 253 (310)
+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++.. .+++ ..+. .++.+...+.
T Consensus 119 lA~~aa~~G~~~~ivvP~~~---s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~ 195 (423)
T PLN02356 119 LATVAPAYGCKCHVVIPDDV---AIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIH 195 (423)
T ss_pred HHHHHHHcCCcEEEEECCCC---cHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 99999999999999999987 688999999999999999642 1122 1111 1111111110
Q ss_pred ---------------------cCCceeecCCCC----CCC---Chhhhh------cccceeccchHHHHHHHHHHHHHhC
Q 021613 254 ---------------------VETTHYILGSVA----GPH---PYPMMV------RDFHATSIGEMGWETRCADCMRWWW 299 (310)
Q Consensus 254 ---------------------~~~~~Yi~gs~~----~~h---p~~~iv------~d~~~v~vGT~G~e~gi~q~l~~~~ 299 (310)
..+.+|+....- ..| +.+||+ .|+.++++||||+.+|+.++||+.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~ 275 (423)
T PLN02356 196 LEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKN 275 (423)
T ss_pred ccccccccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhC
Confidence 012233321110 011 234443 3557789999999999999999998
Q ss_pred C--ccccccCc
Q 021613 300 F--KCHGSLPR 308 (310)
Q Consensus 300 ~--~~~~~~Pr 308 (310)
+ .+++.-|.
T Consensus 276 P~vkVigVep~ 286 (423)
T PLN02356 276 PNIKCFLIDPP 286 (423)
T ss_pred CCCEEEEEecC
Confidence 7 55555554
No 55
>PRK06450 threonine synthase; Validated
Probab=99.96 E-value=6.1e-30 Score=246.26 Aligned_cols=160 Identities=21% Similarity=0.236 Sum_probs=130.4
Q ss_pred hcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHH
Q 021613 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (310)
Q Consensus 119 ~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~ 198 (310)
..|+ |||++. .+||+|+|++|||||||||++.+++..|.+.|.+ .|+++|+||||.|+|++|++
T Consensus 55 geG~-TPLv~~--------------~~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~~-~vv~aSsGN~g~slA~~aa~ 118 (338)
T PRK06450 55 GEGR-TPLIKK--------------GNIWFKLDFLNPTGSYKDRGSVTLISYLAEKGIK-QISEDSSGNAGASIAAYGAA 118 (338)
T ss_pred CCCC-CCceec--------------CCEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC-EEEEECCcHHHHHHHHHHHH
Confidence 4664 999985 3699999999999999999999999999998876 57899999999999999999
Q ss_pred cCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCCh--------
Q 021613 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY-------- 270 (310)
Q Consensus 199 ~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~-------- 270 (310)
+|++|+||||++. ++.|+.+|+.|||+|+.++. +++++.+.+ ++ .+.+|.... . +|+
T Consensus 119 ~G~~~~i~vP~~~---~~~k~~~i~~~GA~vi~v~~---~~~~~~~~a-----~~-~g~~~~~~~-~--np~~ieG~kTi 183 (338)
T PRK06450 119 AGIEVKIFVPETA---SGGKLKQIESYGAEVVRVRG---SREDVAKAA-----EN-SGYYYASHV-L--QPQFRDGIRTL 183 (338)
T ss_pred cCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHH-----Hh-cCeEeccCC-C--CccHHHHHHHH
Confidence 9999999999987 68899999999999999985 466653321 12 123444222 1 222
Q ss_pred -hhh-------hcccceeccchHHHHHHHHHHHHHhCC-ccccccCcc
Q 021613 271 -PMM-------VRDFHATSIGEMGWETRCADCMRWWWF-KCHGSLPRI 309 (310)
Q Consensus 271 -~~i-------v~d~~~v~vGT~G~e~gi~q~l~~~~~-~~~~~~Pr~ 309 (310)
.|+ ++|++++|+|+||+.+|+.++|+++.+ |+++++|||
T Consensus 184 a~EI~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~pri 231 (338)
T PRK06450 184 AYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKI 231 (338)
T ss_pred HHHHHHHcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeE
Confidence 122 467889999999999999999999886 888888886
No 56
>PRK05638 threonine synthase; Validated
Probab=99.96 E-value=4.5e-29 Score=247.88 Aligned_cols=173 Identities=16% Similarity=0.127 Sum_probs=140.7
Q ss_pred hhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHH
Q 021613 117 RDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVC 196 (310)
Q Consensus 117 ~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aa 196 (310)
.-.+| .|||+++ ++++.+ |.+||+|+|++|||||||||++.+++..|.+.|.+. |+++|+||||+|+|++|
T Consensus 61 ~l~~G-~TPLv~~-~~~~~~------g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~~~-vv~aSsGN~g~alA~~a 131 (442)
T PRK05638 61 SLGEG-GTPLIRA-RISEKL------GENVYIKDETRNPTGSFRDRLATVAVSYGLPYAANG-FIVASDGNAAASVAAYS 131 (442)
T ss_pred ccCCC-CCcEEcc-cchHHh------CCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCCCE-EEEeCCChHHHHHHHHH
Confidence 33466 5999999 477766 679999999999999999999999999998888764 67899999999999999
Q ss_pred HHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCCh------
Q 021613 197 ARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY------ 270 (310)
Q Consensus 197 a~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~------ 270 (310)
+++|++|+||||... +..|+.+|+.|||+|+.++. +++++.+.+.+.. ++ .+.+|+. ... ||+
T Consensus 132 a~~G~~~~i~vp~~~---~~~k~~~~~~~GA~vi~v~~---~~~~~~~~a~~~~-~~-~~~~~~~-~~~--np~~~eG~~ 200 (442)
T PRK05638 132 ARAGKEAFVVVPRKV---DKGKLIQMIAFGAKIIRYGE---SVDEAIEYAEELA-RL-NGLYNVT-PEY--NIIGLEGQK 200 (442)
T ss_pred HHcCCCEEEEEeCCC---CHHHHHHHHhcCcEEEEECC---CHHHHHHHHHHHH-Hh-CCeEecC-CCC--ChhHhhhHH
Confidence 999999999999987 68899999999999999974 5778766655433 32 2333332 221 222
Q ss_pred ---hhhh----cccceeccchHHHHHHHHHHHHHhCC-ccccccCcc
Q 021613 271 ---PMMV----RDFHATSIGEMGWETRCADCMRWWWF-KCHGSLPRI 309 (310)
Q Consensus 271 ---~~iv----~d~~~v~vGT~G~e~gi~q~l~~~~~-~~~~~~Pr~ 309 (310)
.|++ +|++++|+|+||+.+|+.++|+++.+ |+++++|||
T Consensus 201 t~a~Ei~eq~~pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~pri 247 (442)
T PRK05638 201 TIAFELWEEINPTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKL 247 (442)
T ss_pred HHHHHHHHHHCcCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeE
Confidence 2333 68899999999999999999999886 888888885
No 57
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=99.96 E-value=5.2e-29 Score=246.32 Aligned_cols=210 Identities=32% Similarity=0.338 Sum_probs=154.7
Q ss_pred hHHHHHHHHHHhcCChhHH--------HHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHH
Q 021613 91 ALSELESALHKLADDRDFQ--------EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKIN 162 (310)
Q Consensus 91 ~~~~i~~a~~~~~~d~~f~--------~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~R 162 (310)
+.+++...|...+.++|+. +++.+.. .. +++|||+++++|++.++ .+.+||+|+|++|||||||+|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~~-~~-~~~TPL~~~~~L~~~lg----~~~~Iy~K~E~~nPtGS~K~R 112 (427)
T PRK12391 39 TPEDLAPIFPMELIEQEVSTERYIDIPEEVREIY-RL-WRPTPLIRARRLEKALG----TPAKIYYKYEGVSPTGSHKPN 112 (427)
T ss_pred CHHHhhhcChHHHhhccCCcccccCChHHHHHHH-cc-cCCCCeeEchhhHhhhC----CCceEEEEEcCCCCCCChHHH
Confidence 4566666666555444433 3444444 33 37899999999998872 137999999999999999999
Q ss_pred HHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCC-----
Q 021613 163 NAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTA----- 237 (310)
Q Consensus 163 ga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~----- 237 (310)
++..++..+++.|.+++|+++|+||||+|+|++|+.+|++|+||||..+...++.|+.+|+.|||+|+.++....
T Consensus 113 ~A~~~a~~a~~~G~~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~ 192 (427)
T PRK12391 113 TAVAQAYYNKKEGIKRLTTETGAGQWGSALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRK 192 (427)
T ss_pred HHHHHHHHHHHCCCCEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhh
Confidence 999999999999988777778899999999999999999999999985433356788999999999999986421
Q ss_pred ----------CHHHHHHHHHHHHHHccCCceeecCCCCCCCC-------hhhh---------hcccceeccchHHHHHHH
Q 021613 238 ----------TLKDATSEAIRDWVTNVETTHYILGSVAGPHP-------YPMM---------VRDFHATSIGEMGWETRC 291 (310)
Q Consensus 238 ----------~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp-------~~~i---------v~d~~~v~vGT~G~e~gi 291 (310)
.+..+++++.+.+.++ ++.+|.++++.+ |. ..|+ .+|++++++|+||+.+|+
T Consensus 193 ~~~~~~~~~gsl~~ai~~A~e~a~~~-~~~~y~~~s~~~-~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi 270 (427)
T PRK12391 193 ILAEDPDHPGSLGIAISEAVEDAAKR-PDTKYALGSVLN-HVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGL 270 (427)
T ss_pred hhhcCccccccHHHHHHHHHHHHHhC-CCcEEEcCCCCc-HHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHH
Confidence 2233566666665543 456788777643 21 1222 357788899999999999
Q ss_pred HHHH-HH--hC-C--ccccccCc
Q 021613 292 ADCM-RW--WW-F--KCHGSLPR 308 (310)
Q Consensus 292 ~q~l-~~--~~-~--~~~~~~Pr 308 (310)
...+ ++ .+ + .+++..|.
T Consensus 271 ~~~f~~~~~~g~~~~riiaVEp~ 293 (427)
T PRK12391 271 AFPFLGDKLEGKKDTRFIAVEPA 293 (427)
T ss_pred HHHHHHHHhcCCCCceEEEEeec
Confidence 9865 32 23 2 55666554
No 58
>PRK06260 threonine synthase; Validated
Probab=99.96 E-value=5.4e-29 Score=244.15 Aligned_cols=174 Identities=25% Similarity=0.308 Sum_probs=139.7
Q ss_pred hcCCCCCEEEccccchhhcCCCCCCC-eEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHH
Q 021613 119 YVGRETPLYFAERLTEHYRRPNGGGP-HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCA 197 (310)
Q Consensus 119 ~vg~~TPL~~~~~Ls~~~~~~~~~g~-~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa 197 (310)
.+| +|||+++++|++.+ |. +||+|+|++|||||||||++.+++..+.+.|.+ .|+++|+||||+|+|++|+
T Consensus 64 ~~G-~TPLv~~~~l~~~~------g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~~-~vv~aSsGN~g~alA~~aa 135 (397)
T PRK06260 64 NEG-GTPLYRCPNLEKEL------GVKELYVKHEGANPTGSFKDRGMTVGVTKALELGVK-TVACASTGNTSASLAAYAA 135 (397)
T ss_pred CCC-CCCeEEchhhHHHh------CCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCCC-EEEEeCCcHHHHHHHHHHH
Confidence 355 59999999999887 55 999999999999999999999999999999986 5678999999999999999
Q ss_pred HcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCC-------Ch
Q 021613 198 RFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH-------PY 270 (310)
Q Consensus 198 ~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~h-------p~ 270 (310)
++|++|+||||.... +..|+.+++.|||+|+.++. +++++.+.+.+. .++ .+ +|...+. ++. ..
T Consensus 136 ~~G~~~~i~vP~~~~--~~~k~~~~~~~GA~vi~v~~---~~~~~~~~a~~~-~~~-~g-~y~~~~~-np~~~~G~~t~a 206 (397)
T PRK06260 136 RAGLKCYVLLPAGKV--ALGKLAQALLHGAKVLEVDG---NFDDALDMVVEL-AKE-GK-IYLLNSI-NPFRLEGQKTIG 206 (397)
T ss_pred HcCCcEEEEEeCCCc--cHHHHHHHHhcCCEEEEECC---cHHHHHHHHHHH-Hhh-CC-EEeecCC-CchhhcchhhHH
Confidence 999999999998722 57899999999999999985 567765554443 333 12 3443321 211 11
Q ss_pred hhh-------hcccceeccchHHHHHHHHHHHHHhCC-ccccccCcc
Q 021613 271 PMM-------VRDFHATSIGEMGWETRCADCMRWWWF-KCHGSLPRI 309 (310)
Q Consensus 271 ~~i-------v~d~~~v~vGT~G~e~gi~q~l~~~~~-~~~~~~Pr~ 309 (310)
.|+ .+|++++|+|+||+.+|+..+|+++.+ |+++++|||
T Consensus 207 ~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~pri 253 (397)
T PRK06260 207 FEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKM 253 (397)
T ss_pred HHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeE
Confidence 122 367889999999999999999999875 888888875
No 59
>PLN02569 threonine synthase
Probab=99.96 E-value=1.1e-28 Score=247.26 Aligned_cols=174 Identities=20% Similarity=0.266 Sum_probs=139.3
Q ss_pred cCCCCCEEEccccchh-hcCCCCCC-CeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC----CeEEEecCcchHHHHHH
Q 021613 120 VGRETPLYFAERLTEH-YRRPNGGG-PHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGVATA 193 (310)
Q Consensus 120 vg~~TPL~~~~~Ls~~-~~~~~~~g-~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~----~~~Vv~aSsGNhg~AlA 193 (310)
.| .|||+++++|++. + | .+||+|+|++|||||||||++...+..+.+.|. ...|+++|+||||.|+|
T Consensus 131 eG-~TPLv~~~~l~~~~~------G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlA 203 (484)
T PLN02569 131 EG-NSNLFWAERLGKEFL------GMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALS 203 (484)
T ss_pred CC-CCceeEhhhhhHhhc------CCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHH
Confidence 45 5999999999887 6 4 589999999999999999999999998887664 24688999999999999
Q ss_pred HHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCC-----
Q 021613 194 TVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH----- 268 (310)
Q Consensus 194 ~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~h----- 268 (310)
++|+++|++|+||||++.. +..|+.+|+.|||+|+.++. +++++.+.+.+.. ++. . +|...+. ++.
T Consensus 204 ayaa~~Gl~~~I~vP~~~~--~~~k~~qi~a~GA~Vi~v~g---~~d~a~~~a~e~~-~~~-~-~~~~n~~-Np~~ieG~ 274 (484)
T PLN02569 204 AYCAAAGIPSIVFLPADKI--SIAQLVQPIANGALVLSIDT---DFDGCMRLIREVT-AEL-P-IYLANSL-NSLRLEGQ 274 (484)
T ss_pred HHHHhcCCeEEEEEcCCCC--CHHHHHHHHhcCCEEEEECC---CHHHHHHHHHHHH-HHc-C-CEecCCC-CcchhHhH
Confidence 9999999999999999732 56899999999999999986 5777765555433 221 2 3332222 211
Q ss_pred --Chhhh-------hcccceeccchHHHHHHHHHHHHHhCC-ccccccCcc
Q 021613 269 --PYPMM-------VRDFHATSIGEMGWETRCADCMRWWWF-KCHGSLPRI 309 (310)
Q Consensus 269 --p~~~i-------v~d~~~v~vGT~G~e~gi~q~l~~~~~-~~~~~~Pr~ 309 (310)
...|+ ++|++++|+|+||+.+|+.++|+++.. |+++++|||
T Consensus 275 kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Pri 325 (484)
T PLN02569 275 KTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRL 325 (484)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeE
Confidence 01112 478889999999999999999999886 999999986
No 60
>PRK08329 threonine synthase; Validated
Probab=99.96 E-value=1.6e-28 Score=237.06 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=130.6
Q ss_pred cCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHc
Q 021613 120 VGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARF 199 (310)
Q Consensus 120 vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~ 199 (310)
.|. |||+++ +.+||+|+|++|||||||||++.+++..|.+.|.+ .|+++|+||||+|+|++|+++
T Consensus 62 eg~-Tpl~~~-------------~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~-~vv~aSsGN~g~alA~~aa~~ 126 (347)
T PRK08329 62 PPI-TPTVKR-------------SIKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGIN-EVVIDSSGNAALSLALYSLSE 126 (347)
T ss_pred CCC-CccccC-------------CCeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCCC-EEEEECCCcHHHHHHHHHHHc
Confidence 353 999986 45899999999999999999999999999999986 567899999999999999999
Q ss_pred CCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCC-------Chhh
Q 021613 200 GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH-------PYPM 272 (310)
Q Consensus 200 Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~h-------p~~~ 272 (310)
|++|+||||.+. ++.|+.+++.|||+|+.++. +++++...+.+. .++ .+.+|+... .++. ...|
T Consensus 127 G~~~~v~vp~~~---~~~k~~~~~~~GA~v~~v~~---~~~~~~~~a~~l-~~~-~~~~~~~~~-~np~~~eG~~t~~~E 197 (347)
T PRK08329 127 GIKVHVFVSYNA---SKEKISLLSRLGAELHFVEG---DRMEVHEEAVKF-SKR-NNIPYVSHW-LNPYFLEGTKTIAYE 197 (347)
T ss_pred CCcEEEEECCCC---hHHHHHHHHHcCCEEEEECC---CHHHHHHHHHHH-HHh-cCCeeccCC-CCchhhccchhHHHH
Confidence 999999999987 67899999999999999986 345554444333 222 223443321 1111 1122
Q ss_pred h-----hcccceeccchHHHHHHHHHHHHHhCC-ccccccCcc
Q 021613 273 M-----VRDFHATSIGEMGWETRCADCMRWWWF-KCHGSLPRI 309 (310)
Q Consensus 273 i-----v~d~~~v~vGT~G~e~gi~q~l~~~~~-~~~~~~Pr~ 309 (310)
+ .+|++++|+|+||+.+|+.++|+++.. |++++.||+
T Consensus 198 i~eql~~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~i 240 (347)
T PRK08329 198 IYEQIGVPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKL 240 (347)
T ss_pred HHHHcCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEE
Confidence 2 467889999999999999999999875 777777765
No 61
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.96 E-value=3e-28 Score=241.52 Aligned_cols=181 Identities=22% Similarity=0.240 Sum_probs=137.1
Q ss_pred HhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC---CeEEEecCcchHHHHH
Q 021613 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVAT 192 (310)
Q Consensus 116 l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~---~~~Vv~aSsGNhg~Al 192 (310)
+.+++| +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+.|+ ...|+++|+||||+|+
T Consensus 5 ~~~~~~-~TPl~~~~~l~~~~------~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~al 77 (454)
T TIGR01137 5 IIDLIG-NTPLVRLNKVSKGI------KCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGL 77 (454)
T ss_pred hHHhcC-CCceEEccccCCCC------CceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHH
Confidence 556786 69999999998765 6799999999999999999999999999998876 2458899999999999
Q ss_pred HHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHH---HHHHHHHHHHHccCCceeecCC----CC
Q 021613 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKD---ATSEAIRDWVTNVETTHYILGS----VA 265 (310)
Q Consensus 193 A~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~d---a~~~a~~~~~~~~~~~~Yi~gs----~~ 265 (310)
|++|+++|++|+||||+.. ++.|+.+++.|||+|+.++... .+++ ..+.+. ...++..+.+|+.+. +.
T Consensus 78 A~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~v~~~~~~~-~~~~~~~~~~~a~-~l~~~~~~~~~~~~~~~~~~~ 152 (454)
T TIGR01137 78 ALVAAIKGYKCIIVLPEKM---SNEKVDVLKALGAEIVRTPTAA-AFDSPESHIGVAK-RLVREIPGAHILDQYNNPSNP 152 (454)
T ss_pred HHHHHHcCCeEEEEeCCCc---CHHHHHHHHHCCCEEEEcCCcc-CCCchHHHHHHHH-HHHHhCCCcEecccCCChhhH
Confidence 9999999999999999987 5789999999999999998531 1221 122222 233332333443332 11
Q ss_pred CCC---Chhhhh------cccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 266 GPH---PYPMMV------RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 266 ~~h---p~~~iv------~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
..| ...|++ +|++++++||||+.+|+..+|++.++ .+++..|.
T Consensus 153 ~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~ 206 (454)
T TIGR01137 153 LAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPE 206 (454)
T ss_pred HHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecC
Confidence 112 123332 46778899999999999999999876 55666553
No 62
>PRK07409 threonine synthase; Validated
Probab=99.96 E-value=3.3e-28 Score=235.12 Aligned_cols=166 Identities=22% Similarity=0.258 Sum_probs=130.6
Q ss_pred hcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHH
Q 021613 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (310)
Q Consensus 119 ~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~ 198 (310)
.+| +|||+++++|++.+ |.+||+|+|++|||||||||++.+++..+.+.|.+ .|+++|+||||+|+|++|+.
T Consensus 28 ~~g-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~-~iv~aSsGN~g~alA~~a~~ 99 (353)
T PRK07409 28 GEG-NTPLIPAPNLSELL------GVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGAK-AVICASTGNTSASAAAYAAR 99 (353)
T ss_pred CCC-CCCEEEchhhHHHh------CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCC-EEEEECCcHHHHHHHHHHHH
Confidence 466 59999999998876 68999999999999999999999999999988876 57889999999999999999
Q ss_pred cCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCC---CCCC--Chhhh
Q 021613 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSV---AGPH--PYPMM 273 (310)
Q Consensus 199 ~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~---~~~h--p~~~i 273 (310)
+|++|+||||+... +..|+++|+.|||+|+.++. +++++.+.+.+ ..++.. .+++...+ ...| ...|+
T Consensus 100 ~G~~~~ivvP~~~~--~~~k~~~~~~~GA~Vi~~~~---~~~~~~~~a~~-l~~~~~-~~~~~~~n~~~~~g~~t~~~EI 172 (353)
T PRK07409 100 AGLKAFVLIPEGKI--ALGKLAQAVMYGAEIIQIDG---NFDDALEIVRE-LAEKYP-VTLVNSVNPYRIEGQKTAAFEI 172 (353)
T ss_pred cCCCEEEEEcCCCC--chhhHHHHHhcCCEEEEECC---CHHHHHHHHHH-HHHhcC-ceecCCCCchhhhhHHHHHHHH
Confidence 99999999999732 46799999999999999985 57776555443 333322 23322111 0011 12333
Q ss_pred ------hcccceeccchHHHHHHHHHHHHHhC
Q 021613 274 ------VRDFHATSIGEMGWETRCADCMRWWW 299 (310)
Q Consensus 274 ------v~d~~~v~vGT~G~e~gi~q~l~~~~ 299 (310)
.+|.+++++||||+.+|+.++|+++.
T Consensus 173 ~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~ 204 (353)
T PRK07409 173 VDALGDAPDYHCIPVGNAGNITAYWKGYKEYH 204 (353)
T ss_pred HHHhCCCCCEEEEeCCChHHHHHHHHHHHHHH
Confidence 24667889999999999999998874
No 63
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=99.96 E-value=1.3e-28 Score=223.98 Aligned_cols=183 Identities=20% Similarity=0.308 Sum_probs=146.9
Q ss_pred hhhHHHHHHHHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHH
Q 021613 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (310)
Q Consensus 89 ~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l 168 (310)
.++++|+++|+. ++++++ +.||++.++.|.+.. |.+||+|+|++|.||+||.|||++.+
T Consensus 6 ~~t~~dv~~A~~--------------rik~~i-hkTpVlTS~~ln~~~------g~~vfFKcE~fQKtGaFKfRGAlNav 64 (323)
T KOG1251|consen 6 KITYEDVRAAHQ--------------RIKPFI-HKTPVLTSENLNEKV------GRHVFFKCENFQKTGAFKFRGALNAV 64 (323)
T ss_pred cCCHHHHHHHHH--------------HHHhhh-ccCceechhhHHHHh------hhheEeehhhhhhccceehhhhHHHH
Confidence 457899999999 999999 579999999999998 78999999999999999999999999
Q ss_pred HHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHH
Q 021613 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (310)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~ 248 (310)
..+..+.+.++|++.||||||+|+|++|+.+||+|+||||.++ +..|+..++.|||+|++.+... +..+...+
T Consensus 65 ~~l~~ek~~kgvithSSGNHaqAlalaAk~~giPa~IVvP~~A---P~~Kv~a~~~Yga~ii~~e~~~----~sRE~va~ 137 (323)
T KOG1251|consen 65 SSLKAEKRAKGVITHSSGNHAQALALAAKILGIPATIVVPKDA---PICKVAATRGYGANIIFCEPTV----ESRESVAK 137 (323)
T ss_pred HHhhHhhhcCceEeecCCcHHHHHHHHHHhcCCCeEEEecCCC---hHHHHHHHHhcCceEEEecCcc----chHHHHHH
Confidence 9998777767889999999999999999999999999999999 6889999999999999998753 22223233
Q ss_pred HHHHccCCceeecCCCCCCCChh-------------hh---h--cccceeccchHHHHHHHHHHHHHhCCcc--ccccC
Q 021613 249 DWVTNVETTHYILGSVAGPHPYP-------------MM---V--RDFHATSIGEMGWETRCADCMRWWWFKC--HGSLP 307 (310)
Q Consensus 249 ~~~~~~~~~~Yi~gs~~~~hp~~-------------~i---v--~d~~~v~vGT~G~e~gi~q~l~~~~~~~--~~~~P 307 (310)
+..++ ..+|++ |||. ++ | -|...+|+|.||+.+|+.-..+.+.|.| .+..|
T Consensus 138 ~ltee--~g~~~i------~Py~~p~vIaGqgTiA~ElleqVg~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP 208 (323)
T KOG1251|consen 138 DLTEE--TGYYLI------HPYNHPSVIAGQGTIALELLEQVGEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEP 208 (323)
T ss_pred HHHHh--cCcEEe------CCCCCcceeeccchHHHHHHHhhCccceEEEeecCcchhhHHHHHHhccCCCcEEEEecC
Confidence 33333 223332 2221 11 1 2445788999999999887778887743 45555
No 64
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=99.96 E-value=1.9e-28 Score=233.35 Aligned_cols=165 Identities=27% Similarity=0.298 Sum_probs=131.0
Q ss_pred hcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHH
Q 021613 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (310)
Q Consensus 119 ~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~ 198 (310)
.+| +|||+++++|++.+ ++.+||+|+|++|||||||+|++.+++..+.+.|.+ .|+++|+||||+|+|++|+.
T Consensus 19 ~~g-~TPl~~~~~l~~~~-----g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~-~vv~~SsGN~g~alA~~a~~ 91 (324)
T cd01563 19 GEG-NTPLVRAPRLGERL-----GGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGVK-AVACASTGNTSASLAAYAAR 91 (324)
T ss_pred CCC-CCceeechhhHhhc-----CCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCCC-EEEEeCCCHHHHHHHHHHHH
Confidence 455 69999999999876 248999999999999999999999999999988865 56789999999999999999
Q ss_pred cCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCC----CCCC--Chhh
Q 021613 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSV----AGPH--PYPM 272 (310)
Q Consensus 199 ~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~----~~~h--p~~~ 272 (310)
+|++|+||||... ++.|+++|+.+||+|+.++. +++++.+.+.+. .++. .+|..+.. ...| ...|
T Consensus 92 ~G~~~~ivvp~~~---~~~k~~~l~~~GA~Vi~~~~---~~~~~~~~a~~~-~~~~--~~~~~~~~n~~~~~g~~t~~~E 162 (324)
T cd01563 92 AGIKCVVFLPAGK---ALGKLAQALAYGATVLAVEG---NFDDALRLVREL-AEEN--WIYLSNSLNPYRLEGQKTIAFE 162 (324)
T ss_pred cCCceEEEEeCCC---CHHHHHHHHHcCCEEEEECC---cHHHHHHHHHHH-HHhc--CeeccCCCCcceecchhhhHHH
Confidence 9999999999987 67899999999999999985 466665544333 3321 34443221 1101 2233
Q ss_pred hh-------cccceeccchHHHHHHHHHHHHHhC
Q 021613 273 MV-------RDFHATSIGEMGWETRCADCMRWWW 299 (310)
Q Consensus 273 iv-------~d~~~v~vGT~G~e~gi~q~l~~~~ 299 (310)
+. +|.+++++||||+.+|+..+|+++.
T Consensus 163 i~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~ 196 (324)
T cd01563 163 IAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELK 196 (324)
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHH
Confidence 32 4667889999999999999999875
No 65
>PRK06721 threonine synthase; Reviewed
Probab=99.96 E-value=8.4e-28 Score=232.40 Aligned_cols=173 Identities=23% Similarity=0.269 Sum_probs=133.1
Q ss_pred hcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHH
Q 021613 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (310)
Q Consensus 119 ~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~ 198 (310)
.+| +|||+++++|++.+ |.+||+|+|++|||||||||++.+++..+.++|.+ .|+++|+||||+|+|++|++
T Consensus 25 ~~G-~TPl~~l~~l~~~~------g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~-~vV~aSsGN~G~alA~~aa~ 96 (352)
T PRK06721 25 MEG-NTPLIPLLNISKQL------GIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGSE-AIICASTGNTSASAAAYAAR 96 (352)
T ss_pred CcC-CCCeeEchhhHHHh------CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCC-EEEEECCcHHHHHHHHHHHH
Confidence 366 69999999999877 68999999999999999999999999999998875 56789999999999999999
Q ss_pred cCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCC-------Chh
Q 021613 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH-------PYP 271 (310)
Q Consensus 199 ~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~h-------p~~ 271 (310)
+|++|+||||+... ++.|+++|+.+||+|+.++. +++++.+.+.+. .++. . +|..++. +++ ...
T Consensus 97 ~G~~~~vvvp~~~~--~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~~-~~~~-~-~~~~~~~-n~~~~~G~~t~~~ 167 (352)
T PRK06721 97 LGMKCIIVIPEGKI--AHGKLAQAVAYGAEIISIEG---NFDDALKAVRNI-AAEE-P-ITLVNSV-NPYRIEGQKTAAF 167 (352)
T ss_pred CCCcEEEEECCCCC--CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHHH-HHhC-C-ceeccCC-CchhhhhhhhHHH
Confidence 99999999998642 46799999999999999985 466665554443 3331 2 2332221 111 123
Q ss_pred hh------hcccceeccchHHHHHH----HHHHHHHhC-C--ccccccCc
Q 021613 272 MM------VRDFHATSIGEMGWETR----CADCMRWWW-F--KCHGSLPR 308 (310)
Q Consensus 272 ~i------v~d~~~v~vGT~G~e~g----i~q~l~~~~-~--~~~~~~Pr 308 (310)
|+ .+|++++++||||+.+| +.+++++.+ + .++++.|.
T Consensus 168 Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~ 217 (352)
T PRK06721 168 EICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAE 217 (352)
T ss_pred HHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecC
Confidence 33 24667889999999997 556666664 3 66666664
No 66
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=99.96 E-value=9.1e-28 Score=235.87 Aligned_cols=198 Identities=18% Similarity=0.123 Sum_probs=148.5
Q ss_pred CCccccccchhhhHHHHHHHHHHhcCChhHHHHHHHHH--hhhcCCCCCEEEccccchhhcCCCCCC-CeEEEEecCC-C
Q 021613 79 FGGKFVPETLMYALSELESALHKLADDRDFQEELSGIL--RDYVGRETPLYFAERLTEHYRRPNGGG-PHIYLKREDL-N 154 (310)
Q Consensus 79 ~GG~~vPe~l~~~~~~i~~a~~~~~~d~~f~~el~~~l--~~~vg~~TPL~~~~~Ls~~~~~~~~~g-~~I~lK~E~l-n 154 (310)
|-|.-.|. .++++|+++.. ++ .+.+ .+|||+++++|++.+ | .+||+|+|++ |
T Consensus 16 ~~~~~~~~---~~~~~~~~a~~--------------~~~~~~~~-~~TPL~~~~~l~~~~------G~~~v~~K~E~~q~ 71 (399)
T PRK08206 16 YDGADLPL---LSQEEAKKARA--------------FHQSFPGY-APTPLVALPDLAAEL------GVGSILVKDESYRF 71 (399)
T ss_pred Ccchhhcc---CCHHHHHHHHH--------------HHhcCCCC-CCCCCcchHHHHHHh------CCCcEEEecccCcC
Confidence 44444444 36688888888 67 4466 479999999999988 5 6999999998 5
Q ss_pred CCCChHHHHHHHHHHHhhh--cCCC--------------------eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCch
Q 021613 155 HTGAHKINNAVGQALLAKR--LGKT--------------------RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDM 212 (310)
Q Consensus 155 pTGSfK~Rga~~~l~~a~~--~g~~--------------------~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~ 212 (310)
||||||+||+.+.+..+.. .+.+ .+|+++|+||||+|+|++|+.+|++|+||||...
T Consensus 72 ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~- 150 (399)
T PRK08206 72 GLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVREKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGS- 150 (399)
T ss_pred CCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCC-
Confidence 9999999999988877653 2321 1478999999999999999999999999999987
Q ss_pred hchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCC---CCC-CCh---------hhh------
Q 021613 213 ERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSV---AGP-HPY---------PMM------ 273 (310)
Q Consensus 213 ~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~---~~~-hp~---------~~i------ 273 (310)
++.|+.+|+.|||+|+.++. +++++...+.+...++ +.+|+.... +.. +|+ .||
T Consensus 151 --~~~k~~~i~~~GA~Vi~v~~---~~~~~~~~a~~~~~~~--g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~ 223 (399)
T PRK08206 151 --SEERVDAIRALGAECIITDG---NYDDSVRLAAQEAQEN--GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKE 223 (399)
T ss_pred --CHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHHHHHHc--CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHh
Confidence 57899999999999999995 5777766666544332 334442110 100 011 111
Q ss_pred ---hcccceeccchHHHHHHHHHHHHHhC----CccccccCc
Q 021613 274 ---VRDFHATSIGEMGWETRCADCMRWWW----FKCHGSLPR 308 (310)
Q Consensus 274 ---v~d~~~v~vGT~G~e~gi~q~l~~~~----~~~~~~~Pr 308 (310)
.+|++++++|+||+.+|+..+|+++. +.++++.|.
T Consensus 224 ~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~ 265 (399)
T PRK08206 224 MGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPD 265 (399)
T ss_pred cCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCC
Confidence 26788899999999999999999873 256666664
No 67
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=99.96 E-value=1.3e-27 Score=218.76 Aligned_cols=163 Identities=32% Similarity=0.351 Sum_probs=133.2
Q ss_pred CCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC--CeEEEecCcchHHHHHHHHHHHcCC
Q 021613 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK--TRIIAETGAGQHGVATATVCARFGL 201 (310)
Q Consensus 124 TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~--~~~Vv~aSsGNhg~AlA~aaa~~Gi 201 (310)
|||+++++|++.. +.+||+|+|++|||||||||++.+++..+.+.|. ..+|+++|+||||.|+|++|+++|+
T Consensus 1 TPl~~~~~l~~~~------~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~ 74 (244)
T cd00640 1 TPLVRLKRLSKLG------GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGL 74 (244)
T ss_pred CCeeEcccccccc------CCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence 8999999998754 7899999999999999999999999999998884 5678899999999999999999999
Q ss_pred eEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCC-----C--Chhhh-
Q 021613 202 QCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGP-----H--PYPMM- 273 (310)
Q Consensus 202 ~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~-----h--p~~~i- 273 (310)
+|+||||... +..|+++|+.+||+|+.++.. ++++.+.+.+.. ++..+.+|++... ++ | ...++
T Consensus 75 ~~~v~~p~~~---~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~-~~~~~~~~~~~~~-n~~~~~g~~~~~~Ei~ 146 (244)
T cd00640 75 KCTIVMPEGA---SPEKVAQMRALGAEVVLVPGD---FDDAIALAKELA-EEDPGAYYVNQFD-NPANIAGQGTIGLEIL 146 (244)
T ss_pred CEEEEECCCC---CHHHHHHHHHCCCEEEEECCC---HHHHHHHHHHHH-HhCCCCEecCCCC-CHHHHHHHHHHHHHHH
Confidence 9999999987 678999999999999999863 677665554443 3324556654421 11 1 11222
Q ss_pred ------hcccceeccchHHHHHHHHHHHHHhCC
Q 021613 274 ------VRDFHATSIGEMGWETRCADCMRWWWF 300 (310)
Q Consensus 274 ------v~d~~~v~vGT~G~e~gi~q~l~~~~~ 300 (310)
.+|++++|+||||+.+|+..++++.++
T Consensus 147 ~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~ 179 (244)
T cd00640 147 EQLGGQKPDAVVVPVGGGGNIAGIARALKELLP 179 (244)
T ss_pred HHcCCCCCCEEEEecCccHHHHHHHHHHHHhCC
Confidence 267888999999999999999999876
No 68
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=99.95 E-value=3.2e-27 Score=223.95 Aligned_cols=170 Identities=19% Similarity=0.197 Sum_probs=127.3
Q ss_pred hhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCC--CChHHHHHHHHHHHhhhcCCCeEEEec--CcchHHHHHH
Q 021613 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT--GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVATA 193 (310)
Q Consensus 118 ~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpT--GSfK~Rga~~~l~~a~~~g~~~~Vv~a--SsGNhg~AlA 193 (310)
++++++|||+++++|++.. +.+||+|+|++||| ||||+|++.+++..++++|.+. |+++ |+||||+|+|
T Consensus 2 ~~~~~~TPl~~~~~l~~~~------g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~~-vv~~g~ssGN~g~alA 74 (311)
T TIGR01275 2 ELIPWPTPIQYLPRISREI------GAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGADT-VITVGAIQSNHARATA 74 (311)
T ss_pred CCCCCCCcceechhhhhhc------CCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCCE-EEEcCCchhHHHHHHH
Confidence 3566899999999998876 68999999999997 9999999999999999888864 5677 5599999999
Q ss_pred HHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHH---HHHHHHccCCceeecCCCCCCCCh
Q 021613 194 TVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEA---IRDWVTNVETTHYILGSVAGPHPY 270 (310)
Q Consensus 194 ~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a---~~~~~~~~~~~~Yi~gs~~~~hp~ 270 (310)
++|+++|++++||||.... +..|..+++.|||+|+.++.. ++++..+.+ .+...++..+.+|+..... +|+
T Consensus 75 ~~a~~~G~~~~ivvp~~~~--~~~~~~~~~~~Ga~v~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~ 148 (311)
T TIGR01275 75 LAAKKLGLDAVLVLREKEE--LNGNLLLDKLMGAETRVYSAE--EYFEIMKYAEELAEELEKEGRKPYVIPVGGS--NSL 148 (311)
T ss_pred HHHHHhCCceEEEecCCcc--CCCCHHHHHHcCCEEEEECch--hhhhhHHHHHHHHHHHHhcCCCeEEECCCCC--cHH
Confidence 9999999999999998642 245667789999999999853 233322221 1222222223333322222 322
Q ss_pred ---------hhh--------hcccceeccchHHHHHHHHHHHHHhCC
Q 021613 271 ---------PMM--------VRDFHATSIGEMGWETRCADCMRWWWF 300 (310)
Q Consensus 271 ---------~~i--------v~d~~~v~vGT~G~e~gi~q~l~~~~~ 300 (310)
.|+ .+|.+++++||||+.+|+..+|+++++
T Consensus 149 ~~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~ 195 (311)
T TIGR01275 149 GTLGYVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNE 195 (311)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCC
Confidence 222 256778999999999999999999887
No 69
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=99.95 E-value=1.9e-27 Score=226.85 Aligned_cols=162 Identities=16% Similarity=0.072 Sum_probs=127.4
Q ss_pred CCCCEEEccccchhhcCCCCCCC-eEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcC
Q 021613 122 RETPLYFAERLTEHYRRPNGGGP-HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFG 200 (310)
Q Consensus 122 ~~TPL~~~~~Ls~~~~~~~~~g~-~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~G 200 (310)
.+|||+++++|++.+ +. +||+|+|++|||||||||++.+++..+.+.|.. +|+++|+||||+|+|++|+.+|
T Consensus 22 g~TPl~~~~~l~~~~------g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~-~vv~aSsGN~g~a~A~~a~~~g 94 (328)
T TIGR00260 22 GVTPLFRSPALVANV------GIKNLYVLELFHNPTLSFKDRGMAVALTKALELGND-TVLCASTGNTGAAAAAYAGKAG 94 (328)
T ss_pred CCccCccchHHHHhc------CCccEEehhhccCCchhhHhhhHHHHHHHHHHcCCC-EEEEeCCcHHHHHHHHHhccCC
Confidence 479999999998877 55 999999999999999999999999999888865 6788999999999999999999
Q ss_pred CeEEEEeCCC-chhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCC-----CCCC--Chhh
Q 021613 201 LQCIVYMGAQ-DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSV-----AGPH--PYPM 272 (310)
Q Consensus 201 i~~~Ivmp~~-~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~-----~~~h--p~~~ 272 (310)
++|+||||+. . ++.|+.+++.+||+|+.++. +++++.+.+.+. .++. ..++....+ ...| .+.+
T Consensus 95 ~~~~v~~p~~~~---s~~k~~~~~~~GA~Vi~~~~---~~~~~~~~~~~~-~~~~-~~~~~~~~n~~~~~~~g~~t~~~E 166 (328)
T TIGR00260 95 VKVVILYPAGKI---SLGKLAQALGYNAEVVAIDG---NFDDAQRLVKQL-FGDK-EALGLNSVNSIPYRLEGQKTYAFE 166 (328)
T ss_pred CcEEEEECCCCC---CHHHHHHHHhcCcEEEEecC---CHHHHHHHHHHH-Hhhc-CeeecccCCCCCeEeeeehhHHHH
Confidence 9999999998 5 57899999999999999985 567765544433 3321 112221111 0001 1222
Q ss_pred h-------hcccceeccchHHHHHHHHHHHHHh
Q 021613 273 M-------VRDFHATSIGEMGWETRCADCMRWW 298 (310)
Q Consensus 273 i-------v~d~~~v~vGT~G~e~gi~q~l~~~ 298 (310)
+ .+|++++++|+||+.+|+..+|+++
T Consensus 167 i~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~ 199 (328)
T TIGR00260 167 AVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEK 199 (328)
T ss_pred HHHHhCCCCCCEEEEECCCcchHHHHHHHHHHH
Confidence 2 2466788999999999999999985
No 70
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=99.94 E-value=3e-26 Score=223.53 Aligned_cols=180 Identities=17% Similarity=0.127 Sum_probs=135.7
Q ss_pred HHHHHhhhcCCCCCEEEccccchhhcCCCCCC-CeEEEEecCCCC-CCChHHHHHHHHHHHhhhcC--------------
Q 021613 112 LSGILRDYVGRETPLYFAERLTEHYRRPNGGG-PHIYLKREDLNH-TGAHKINNAVGQALLAKRLG-------------- 175 (310)
Q Consensus 112 l~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g-~~I~lK~E~lnp-TGSfK~Rga~~~l~~a~~~g-------------- 175 (310)
+++++..+ ++|||+++++|++.+ | .+||+|+|++|+ |||||+||+.+.+..+.+..
T Consensus 13 ~~~~~~~~--~~TPL~~~~~l~~~~------g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~ 84 (376)
T TIGR01747 13 FHKKIPGY--RPTPLCALDHLANLL------GLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLK 84 (376)
T ss_pred HHHhCCCC--CCCCCcchHHHHHHh------CCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHh
Confidence 44488887 479999999999988 6 599999999986 89999999999888764421
Q ss_pred --------CCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHH
Q 021613 176 --------KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAI 247 (310)
Q Consensus 176 --------~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~ 247 (310)
..++|+++|+||||+|+|++|+.+|++|+||||+.. ++.|+.+|+.|||+|+.++. +++++.+.+.
T Consensus 85 ~~~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~---~~~k~~~i~~~GAeVi~v~~---~~~~a~~~a~ 158 (376)
T TIGR01747 85 NDAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGS---AQERVENILNLGAECTITDM---NYDDTVRLAM 158 (376)
T ss_pred hhHHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC---CHHHHHHHHH
Confidence 034688999999999999999999999999999987 67899999999999999985 5777766655
Q ss_pred HHHHHccCCceeec-----CCCCCCCCh---------hhh----------hcccceeccchHHHHHHHHHHHHHhCC---
Q 021613 248 RDWVTNVETTHYIL-----GSVAGPHPY---------PMM----------VRDFHATSIGEMGWETRCADCMRWWWF--- 300 (310)
Q Consensus 248 ~~~~~~~~~~~Yi~-----gs~~~~hp~---------~~i----------v~d~~~v~vGT~G~e~gi~q~l~~~~~--- 300 (310)
+.. ++ .+.+++. +.. ..+|+ .|+ .+|++++|+|+||+..|+..++++...
T Consensus 159 ~~~-~~-~g~~~~~~~~~~~~~-~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~ 235 (376)
T TIGR01747 159 QMA-QQ-HGWVVVQDTAWEGYE-KIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENN 235 (376)
T ss_pred HHH-Hh-cCcEEeccccccccc-cCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCC
Confidence 433 32 1233332 111 11232 111 356788999999999999998876532
Q ss_pred -ccccccCc
Q 021613 301 -KCHGSLPR 308 (310)
Q Consensus 301 -~~~~~~Pr 308 (310)
.+++..|.
T Consensus 236 p~vi~Vep~ 244 (376)
T TIGR01747 236 PHSIVVEPD 244 (376)
T ss_pred CEEEEEeeC
Confidence 34444443
No 71
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=99.94 E-value=3.2e-26 Score=224.71 Aligned_cols=181 Identities=18% Similarity=0.127 Sum_probs=133.3
Q ss_pred HHHHHhhhcCCCCCEEEccccchhhcCCCCCC-CeEEEEecCCCC-CCChHHHHHHHHHHHhhh--cC------------
Q 021613 112 LSGILRDYVGRETPLYFAERLTEHYRRPNGGG-PHIYLKREDLNH-TGAHKINNAVGQALLAKR--LG------------ 175 (310)
Q Consensus 112 l~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g-~~I~lK~E~lnp-TGSfK~Rga~~~l~~a~~--~g------------ 175 (310)
.++++..+ ++|||++++.|++.+ | .+||+|+|++|+ |||||+||+.+.+..+.+ .|
T Consensus 32 ~~~~~~~~--~~TPL~~~~~L~~~~------g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~ 103 (396)
T TIGR03528 32 FHQSFPGY--QPTPLAELDNLAKHL------GVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLK 103 (396)
T ss_pred HHhcCCCC--cCCCCcchHHHHHHh------CCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhh
Confidence 33467655 579999999999988 5 699999999985 999999999999887522 22
Q ss_pred ----C----CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHH
Q 021613 176 ----K----TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAI 247 (310)
Q Consensus 176 ----~----~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~ 247 (310)
+ ..+|+++|+||||+|+|++|+++|++|+||||.+. ++.|+.+|+.|||+|+.++. +++++.+.+.
T Consensus 104 ~~~~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~---~~~K~~~ir~~GAeVi~~~~---~~~~a~~~a~ 177 (396)
T TIGR03528 104 SNEIREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGS---AQIRLENIRAEGAECTITDL---NYDDAVRLAW 177 (396)
T ss_pred hHHHHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCC---cHHHHHHHHhcCCEEEEECC---CHHHHHHHHH
Confidence 1 22789999999999999999999999999999987 57899999999999999985 5677766655
Q ss_pred HHHHHccCCceeecC---CCCC-CCCh---------hhh----------hcccceeccchHHHHHHHHHHHHHh-C---C
Q 021613 248 RDWVTNVETTHYILG---SVAG-PHPY---------PMM----------VRDFHATSIGEMGWETRCADCMRWW-W---F 300 (310)
Q Consensus 248 ~~~~~~~~~~~Yi~g---s~~~-~hp~---------~~i----------v~d~~~v~vGT~G~e~gi~q~l~~~-~---~ 300 (310)
+...++ +.+|+.. ..+. .+|+ .|+ .+|++++|+|+||+..++..++++. + +
T Consensus 178 ~~a~~~--g~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p 255 (396)
T TIGR03528 178 KMAQEN--GWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERP 255 (396)
T ss_pred HHHHhc--CcEeeccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCC
Confidence 543322 3333321 0110 0111 111 2567888999999999988888553 2 2
Q ss_pred ccccccCc
Q 021613 301 KCHGSLPR 308 (310)
Q Consensus 301 ~~~~~~Pr 308 (310)
.+++..|.
T Consensus 256 ~vi~Vep~ 263 (396)
T TIGR03528 256 ITVIVEPD 263 (396)
T ss_pred EEEEEccC
Confidence 45565554
No 72
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.94 E-value=1.3e-25 Score=215.58 Aligned_cols=180 Identities=22% Similarity=0.231 Sum_probs=137.1
Q ss_pred hcCCCCCEEEccccchhhcCCCCCC--CeEEEEecCCCCC---CChHHHHHHHHHHHhhhcCCCeEEEec--CcchHHHH
Q 021613 119 YVGRETPLYFAERLTEHYRRPNGGG--PHIYLKREDLNHT---GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVA 191 (310)
Q Consensus 119 ~vg~~TPL~~~~~Ls~~~~~~~~~g--~~I~lK~E~lnpT---GSfK~Rga~~~l~~a~~~g~~~~Vv~a--SsGNhg~A 191 (310)
.+| +|||+++++|++.+ | .+||+|+|++||+ ||||+|++.+++..+.+.|...+ +++ ++||||+|
T Consensus 12 ~~g-~TPL~~~~~l~~~~------g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~v-vs~G~s~GN~g~a 83 (337)
T PRK12390 12 TFG-PTPIHPLKRLSAHL------GGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGADTL-VSIGGVQSNHTRQ 83 (337)
T ss_pred CCC-CCcceeHHHHHHHh------CCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCCEE-EEeCCCccHHHHH
Confidence 355 69999999998877 5 7999999999997 78899999999999999998754 555 77999999
Q ss_pred HHHHHHHcCCeEEEEeCCCchh-----chHHHHHHHHHCCCEEEEEcCCC-CCHHHHHHHHHHHHHHccCCceeecCCCC
Q 021613 192 TATVCARFGLQCIVYMGAQDME-----RQALNVFRMRLLGAEVRAVHSGT-ATLKDATSEAIRDWVTNVETTHYILGSVA 265 (310)
Q Consensus 192 lA~aaa~~Gi~~~Ivmp~~~~~-----~~~~kv~~~~~~GA~Vv~v~~~~-~~~~da~~~a~~~~~~~~~~~~Yi~gs~~ 265 (310)
+|++|+++|++|+|||+...+. .+..|+.+++.|||+|+.++.+. ..++++...+.+.+.++. +..|.+..+.
T Consensus 84 lA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 162 (337)
T PRK12390 84 VAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAG-GKPYAIPAGA 162 (337)
T ss_pred HHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCC-CceEEeCCcC
Confidence 9999999999999998764321 12347889999999999998742 124455555555554432 3456555554
Q ss_pred CCCC---------hhhhh---------cccceeccchHHHHHHHHHHHHHhCC--ccccccC
Q 021613 266 GPHP---------YPMMV---------RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLP 307 (310)
Q Consensus 266 ~~hp---------~~~iv---------~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~P 307 (310)
..|| ..|++ +|++++++||||+.+|+..+|++.++ .+++..|
T Consensus 163 ~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~ 224 (337)
T PRK12390 163 SDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDA 224 (337)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEe
Confidence 4565 23443 46678999999999999999999876 5555544
No 73
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.93 E-value=2.3e-26 Score=215.46 Aligned_cols=177 Identities=29% Similarity=0.338 Sum_probs=126.4
Q ss_pred hhhcCCCCCEEEcc--ccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHH
Q 021613 117 RDYVGRETPLYFAE--RLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (310)
Q Consensus 117 ~~~vg~~TPL~~~~--~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~ 194 (310)
...++ +|||++++ .+++. .+.+||+|+|++|||||||+|++.+++..+++.+.+. |+++|+||||.|+|+
T Consensus 2 ~~~~~-~TPl~~~~~~~~~~~------~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~~~-vv~assGN~g~a~A~ 73 (306)
T PF00291_consen 2 SLGIG-PTPLVRLPSRLLSEL------GGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGGRT-VVGASSGNHGRALAY 73 (306)
T ss_dssp GGGSS-SS-EEEEHEHHHHHC------TTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTTSE-EEEESSSHHHHHHHH
T ss_pred cCCCc-CCCEEECccccchhc------cCCeEEEEECCCCCcCCcccccchhhhhhccccccce-eeeeccCCceehhhh
Confidence 45675 79999975 33433 3899999999999999999999999999998887765 578999999999999
Q ss_pred HHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCC-CCHHHHHHHHHHH--HHHccCCceeecCCCCCCC---
Q 021613 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT-ATLKDATSEAIRD--WVTNVETTHYILGSVAGPH--- 268 (310)
Q Consensus 195 aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~-~~~~da~~~a~~~--~~~~~~~~~Yi~gs~~~~h--- 268 (310)
+|+++|++|+||||.+. +..|+++|+.+||+|+.++... +.++++.+.+.+. ....++. . +.+. ..++
T Consensus 74 ~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~ 147 (306)
T PF00291_consen 74 AAARLGLKCTIVVPEDV---SPEKLKQMRALGAEVILVPGDVEGAFDDAQELAKERAELLSPFNG-E-LNQY-NNPNVIA 147 (306)
T ss_dssp HHHHHTCEEEEEEETTS---HHHHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHHHHHHHHSTT-E-ESTT-TSHHHHH
T ss_pred hhhhccccceeeecccc---ccccccceeeecceEEEcccccccccccccccccccccccccccc-c-cCcc-cchhhhh
Confidence 99999999999999996 6789999999999999998631 1233332222221 1122111 1 1111 0000
Q ss_pred ----Chhhhh-----ccc--ceeccchHHHHHHHHHHHHH--h-CCccccccC
Q 021613 269 ----PYPMMV-----RDF--HATSIGEMGWETRCADCMRW--W-WFKCHGSLP 307 (310)
Q Consensus 269 ----p~~~iv-----~d~--~~v~vGT~G~e~gi~q~l~~--~-~~~~~~~~P 307 (310)
.+.++. +|+ +++|+||||+.+|+.+++++ . ...+++..|
T Consensus 148 g~~~~~~Ei~~q~~~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~~~~~vigv~~ 200 (306)
T PF00291_consen 148 GYATIGLEIYEQLGKPDPDYVVVPVGTGGTAAGIAAGLKELILPPVRVIGVEP 200 (306)
T ss_dssp HHHHHHHHHHHHHTTESESEEEEEESSSHHHHHHHHHHHHHCHTTSEEEEEEE
T ss_pred hhhhcchhcccccccccceEEEecCCchhHHHHHHhhhhhhhcccccceeeec
Confidence 122332 343 78899999999999999999 4 225555444
No 74
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=99.93 E-value=1.6e-25 Score=212.20 Aligned_cols=180 Identities=22% Similarity=0.203 Sum_probs=131.9
Q ss_pred CCEEEccccchhhcCCCCCCCeEEEEecCCCCC---CChHHHHHHHHHHHhhhcCCCeEEEec--CcchHHHHHHHHHHH
Q 021613 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT---GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVATATVCAR 198 (310)
Q Consensus 124 TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpT---GSfK~Rga~~~l~~a~~~g~~~~Vv~a--SsGNhg~AlA~aaa~ 198 (310)
|||+++++|++.++ .+.+||+|+|++||+ ||||+|++.+++..+.+.|.+. |+++ |+||||+|+|++|++
T Consensus 1 TPl~~~~~l~~~~g----~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~~-vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLG----GKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGADT-LVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhC----CCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCCE-EEECCCchhHHHHHHHHHHHH
Confidence 89999999988762 147999999999998 5679999999999999888865 5566 579999999999999
Q ss_pred cCCeEEEEeCCCchh-----chHHHHHHHHHCCCEEEEEcCCCC-CHHHHHHHHHHHHHHccCCceeecCCCC-CCC---
Q 021613 199 FGLQCIVYMGAQDME-----RQALNVFRMRLLGAEVRAVHSGTA-TLKDATSEAIRDWVTNVETTHYILGSVA-GPH--- 268 (310)
Q Consensus 199 ~Gi~~~Ivmp~~~~~-----~~~~kv~~~~~~GA~Vv~v~~~~~-~~~da~~~a~~~~~~~~~~~~Yi~gs~~-~~h--- 268 (310)
+|++|+||||..... .+..|+.+|+.|||+|+.++.... ...++..++.+.+.++....+++..... ++.
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGL 155 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHH
Confidence 999999999987531 124688999999999999986421 2223333444444444222333332221 221
Q ss_pred ----Chhhh---------hcccceeccchHHHHHHHHHHHHHhCC--ccccccCc
Q 021613 269 ----PYPMM---------VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLPR 308 (310)
Q Consensus 269 ----p~~~i---------v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~Pr 308 (310)
...|+ .+|.+++++||||+.+|+..+|+++++ .+++..|.
T Consensus 156 G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~ 210 (307)
T cd06449 156 GYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDAS 210 (307)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 11222 257788999999999999999999887 55665553
No 75
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=99.93 E-value=1.9e-25 Score=214.03 Aligned_cols=181 Identities=23% Similarity=0.243 Sum_probs=132.0
Q ss_pred HhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCC--CChHHHHHHHHHHHhhhcCCCeEEEecC--cchHHHH
Q 021613 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT--GAHKINNAVGQALLAKRLGKTRIIAETG--AGQHGVA 191 (310)
Q Consensus 116 l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpT--GSfK~Rga~~~l~~a~~~g~~~~Vv~aS--sGNhg~A 191 (310)
+...++ +|||++++.|++.+ |.+||+|+|++||+ ||||+|++.+++..+++.|.+.+ +++| +||||+|
T Consensus 9 ~~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~~v-vt~g~s~gN~g~a 80 (331)
T PRK03910 9 LELAGL-PTPLEPLPRLSAAL------GPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGADTL-ITAGAIQSNHARQ 80 (331)
T ss_pred ccccCC-CCCceEhhhhhHhh------CCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCCEE-EEcCcchhHHHHH
Confidence 344564 69999999999877 78999999999996 59999999999999998888754 5664 4899999
Q ss_pred HHHHHHHcCCeEEEEeCCCchhch-----HHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCC
Q 021613 192 TATVCARFGLQCIVYMGAQDMERQ-----ALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAG 266 (310)
Q Consensus 192 lA~aaa~~Gi~~~Ivmp~~~~~~~-----~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~ 266 (310)
+|++|+.+|++|+||||....... ..|+..|+.|||+|+.++.. ++..++..+..+...++... .|+......
T Consensus 81 lA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~-~~~~~~~~~~a~~l~~~~~~-~~~~~~~~~ 158 (331)
T PRK03910 81 TAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAG-TDMDAQLEELAEELRAQGRR-PYVIPVGGS 158 (331)
T ss_pred HHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCcc-chHHHHHHHHHHHHHHcCCc-eEEECCCCC
Confidence 999999999999999999763211 25778999999999999864 23333333333333333222 343322111
Q ss_pred CCC---------hhhh---------hcccceeccchHHHHHHHHHHHHHhCC--ccccccC
Q 021613 267 PHP---------YPMM---------VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLP 307 (310)
Q Consensus 267 ~hp---------~~~i---------v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~P 307 (310)
+| ..|+ .+|++++|+||||+.+|+..+|+++++ .+++..|
T Consensus 159 -~~~~~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~ 218 (331)
T PRK03910 159 -NALGALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTV 218 (331)
T ss_pred -CchhHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 11 1122 257788999999999999999999887 4455444
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=99.93 E-value=3.8e-25 Score=212.55 Aligned_cols=180 Identities=19% Similarity=0.159 Sum_probs=133.8
Q ss_pred CCCCEEEccccchhhcCCCCCCCeEEEEecCCCCC---CChHHHHHHHHHHHhhhcCCCeEEEec--CcchHHHHHHHHH
Q 021613 122 RETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT---GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVATATVC 196 (310)
Q Consensus 122 ~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpT---GSfK~Rga~~~l~~a~~~g~~~~Vv~a--SsGNhg~AlA~aa 196 (310)
.+|||+++++|++.++ .+.+||+|+|++||+ ||||+|++.+++..|+++|... |+++ ++||||+|+|++|
T Consensus 13 g~TPl~~~~~l~~~~g----~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~~-vvs~ggs~gN~g~alA~~a 87 (337)
T TIGR01274 13 GPSPIHPLPRLSQHLG----GKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCTT-LVSIGGIQSNQTRQVAAVA 87 (337)
T ss_pred CCCCceEhHhhHHhcC----CCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCCE-EEECCCCcchHHHHHHHHH
Confidence 4799999999998771 125999999999986 7789999999999999999875 4555 5689999999999
Q ss_pred HHcCCeEEEEeCCCch-h----chHHHHHHHHHCCCEEEEEcCCCC-CHHHHHHHHHHHHHHccCCceeecCCCCCCCCh
Q 021613 197 ARFGLQCIVYMGAQDM-E----RQALNVFRMRLLGAEVRAVHSGTA-TLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (310)
Q Consensus 197 a~~Gi~~~Ivmp~~~~-~----~~~~kv~~~~~~GA~Vv~v~~~~~-~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~ 270 (310)
+++|++|+||||.... . .+..|+.+|+.|||+|+.++...+ ...++...+.+.+.++....+|+ .....+||+
T Consensus 88 ~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i-~~~~~~~~~ 166 (337)
T TIGR01274 88 AHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPI-PAGCSDHPL 166 (337)
T ss_pred HHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEe-CCCCCCCcc
Confidence 9999999999998531 1 125799999999999999986431 23345555555555442232444 333333542
Q ss_pred ---------hhh---------hcccceeccchHHHHHHHHHHHHHhCC--ccccccC
Q 021613 271 ---------PMM---------VRDFHATSIGEMGWETRCADCMRWWWF--KCHGSLP 307 (310)
Q Consensus 271 ---------~~i---------v~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~P 307 (310)
.|+ .+|.+++++||||+.+|+..++++.++ .+++.-|
T Consensus 167 ~~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~ 223 (337)
T TIGR01274 167 GGLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDA 223 (337)
T ss_pred chhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEe
Confidence 222 256678999999999999999999875 5555444
No 77
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=99.93 E-value=4.6e-26 Score=223.74 Aligned_cols=169 Identities=18% Similarity=0.106 Sum_probs=128.0
Q ss_pred CCCEEEccccchhhcCCCCCCC-eEEE-------EecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHH
Q 021613 123 ETPLYFAERLTEHYRRPNGGGP-HIYL-------KREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (310)
Q Consensus 123 ~TPL~~~~~Ls~~~~~~~~~g~-~I~l-------K~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~ 194 (310)
.|||+++++|++.+ |. +||+ |+|++|||||||||++.+++..+.+.|.+ .|+++|+||||+|+|+
T Consensus 62 ~tpl~~~~~L~~~l------G~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~~-~Vv~aSsGN~g~alA~ 134 (398)
T TIGR03844 62 GPVTYKSEGLAREL------GLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGGK-TLVVASAGNTGRAFAE 134 (398)
T ss_pred CCceeehHHHHHHh------CCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHH
Confidence 48999999999988 56 9999 55569999999999999999999998854 6789999999999999
Q ss_pred HHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCCh----
Q 021613 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY---- 270 (310)
Q Consensus 195 aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~---- 270 (310)
+|+++|++|+||||.... ..+...++.+||+|+.++. +++++.+.+.+...++ + +|...... ||+
T Consensus 135 ~aa~~Gi~~~I~vP~~~~---~~~~~~~~~~ga~vv~v~g---~~d~a~~~a~~~a~~~--g-~~~~~~~~--~p~~ieG 203 (398)
T TIGR03844 135 VSAITGQPVILVVPKSSA---DRLWTTEPASSVLLVTVDG---DYTDAIALADRIATLP--G-FVPEGGAR--NVARRDG 203 (398)
T ss_pred HHHHcCCcEEEEECCChH---HHHHHHhhCCcEEEEECCC---CHHHHHHHHHHHHHhC--C-ccccCCCC--CHHHHhh
Confidence 999999999999999852 2222334789999999975 5788766655543222 1 23211111 222
Q ss_pred ---------hhh--hcccceeccchHHHHHHHHHHHHHhCC-ccc-cccCcc
Q 021613 271 ---------PMM--VRDFHATSIGEMGWETRCADCMRWWWF-KCH-GSLPRI 309 (310)
Q Consensus 271 ---------~~i--v~d~~~v~vGT~G~e~gi~q~l~~~~~-~~~-~~~Pr~ 309 (310)
.++ ++|++++|+|.|...+++...+.++.. |++ +++||+
T Consensus 204 ~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l 255 (398)
T TIGR03844 204 MGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRL 255 (398)
T ss_pred HHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCE
Confidence 111 478899999998777777888877654 666 589986
No 78
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=99.93 E-value=9.8e-26 Score=212.96 Aligned_cols=180 Identities=23% Similarity=0.240 Sum_probs=142.2
Q ss_pred HhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCC----CeEEEecCcchHHHH
Q 021613 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGVA 191 (310)
Q Consensus 116 l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~----~~~Vv~aSsGNhg~A 191 (310)
..+.+|. |||+.+.+++..+ .++|++|+|.+||+||.|||-++.++..|++.|. +.++++.+|||+|.+
T Consensus 46 ~~~liG~-TPlv~ln~i~~g~------~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGig 118 (362)
T KOG1252|consen 46 VRDLIGN-TPLVKLNKIAGGC------VARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIG 118 (362)
T ss_pred HHHHhCC-CceEEeccccCCc------cceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHH
Confidence 4567885 9999999886544 7899999999999999999999999999999884 467899999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHH---HHHHHHHHHHHccCCce----eecCCC
Q 021613 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKD---ATSEAIRDWVTNVETTH----YILGSV 264 (310)
Q Consensus 192 lA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~d---a~~~a~~~~~~~~~~~~----Yi~gs~ 264 (310)
+|++|+..|++|+++||+.- +.+|+..+++|||+|+.++... .++- ++..+.+ ..++.+|.+ |.+..+
T Consensus 119 LA~~~a~~Gyk~i~tmP~~m---s~Ek~~~l~a~Gaeii~tp~a~-~~~~~e~ai~~a~~-l~~~~pna~~l~Qf~np~N 193 (362)
T KOG1252|consen 119 LAYMAALRGYKCIITMPEKM---SKEKRILLRALGAEIILTPPAA-GMKGPESAIGKAEE-LLNKTPNAYILDQFHNPGN 193 (362)
T ss_pred HHHHHHHcCceEEEEechhh---hHHHHHHHHHcCCEEEecChHH-ccCChHHHHHHHHH-HHHhCCChHHHHHhcCCCC
Confidence 99999999999999999986 6789999999999999998642 2222 3333332 233333331 233444
Q ss_pred CCCC---Chhhhhccc------ceeccchHHHHHHHHHHHHHhCC--ccccccC
Q 021613 265 AGPH---PYPMMVRDF------HATSIGEMGWETRCADCMRWWWF--KCHGSLP 307 (310)
Q Consensus 265 ~~~h---p~~~iv~d~------~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~P 307 (310)
...| .+++|++|. .+.++||||+.+|+.++++++++ +.+++-|
T Consensus 194 p~~hy~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp 247 (362)
T KOG1252|consen 194 PLAHYETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDP 247 (362)
T ss_pred cccccccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCC
Confidence 4445 678887664 45679999999999999999998 5555555
No 79
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.93 E-value=2.9e-25 Score=212.84 Aligned_cols=181 Identities=18% Similarity=0.201 Sum_probs=132.0
Q ss_pred HHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCC--CChHHHHHHHHHHHhhhcCCCeEEE-ecCcchHHHH
Q 021613 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT--GAHKINNAVGQALLAKRLGKTRIIA-ETGAGQHGVA 191 (310)
Q Consensus 115 ~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpT--GSfK~Rga~~~l~~a~~~g~~~~Vv-~aSsGNhg~A 191 (310)
++.... .+|||+++++|++.. |.+||+|+|++||+ ||||+|++.+++..+.+.|.+.+|+ ++|+||||+|
T Consensus 14 ~~~l~~-~~TPl~~~~~l~~~~------g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~a 86 (329)
T PRK14045 14 RVELIP-WETPIQYLPNISREL------GADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVVITVGAVHSNHAFV 86 (329)
T ss_pred CcccCC-CCCCcccchhhHHHh------CCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHH
Confidence 444445 579999999998876 78999999999996 8999999999999999889876543 6899999999
Q ss_pred HHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCC--CHHHHHHHHHHHHHHccCCceeecCCCCCCCC
Q 021613 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTA--TLKDATSEAIRDWVTNVETTHYILGSVAGPHP 269 (310)
Q Consensus 192 lA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~--~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp 269 (310)
+|++|+++|++|+||||.... ...|...++.+||+++.++.... ..+.+ .+..+...++....+|+..... +|
T Consensus 87 lA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~~~~--n~ 161 (329)
T PRK14045 87 TGLAAKKLGLDAVLVLRGKEE--LKGNYLLDKIMGIETRVYEAKDSFELMKYA-EEVAEELKGEGRKPYIIPPGGA--SP 161 (329)
T ss_pred HHHHHHHcCCeEEEEEeCCCC--CCcCHHHHHHCCCEEEEECCCcccchHHHH-HHHHHHHHhcCCCEEEECCCCC--ch
Confidence 999999999999999997642 23466678999999998875321 12222 2222333333233344433222 23
Q ss_pred hh---------hhh---------cccceeccchHHHHHHHHHHHHHhCC--ccccccC
Q 021613 270 YP---------MMV---------RDFHATSIGEMGWETRCADCMRWWWF--KCHGSLP 307 (310)
Q Consensus 270 ~~---------~iv---------~d~~~v~vGT~G~e~gi~q~l~~~~~--~~~~~~P 307 (310)
.. |++ .|.+++++||||+.+|+..++++.++ .+++..|
T Consensus 162 ~~~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~ 219 (329)
T PRK14045 162 VGTLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAV 219 (329)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 22 332 35678899999999999999999887 5555443
No 80
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.92 E-value=2.9e-25 Score=208.77 Aligned_cols=192 Identities=35% Similarity=0.434 Sum_probs=155.4
Q ss_pred hHHHHHHHHHHhcCChhHHH--------HHHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHH
Q 021613 91 ALSELESALHKLADDRDFQE--------ELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKIN 162 (310)
Q Consensus 91 ~~~~i~~a~~~~~~d~~f~~--------el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~R 162 (310)
.++.|...|.+.+.++||.. |+.+... .+||||||+++.+|.+.++ ..++||+|.|...||||||++
T Consensus 39 ~~e~L~~ifp~~lieqE~s~eR~i~IP~Ev~e~Y~-~~gRPTPL~RA~~LE~~L~----tparIYyK~Eg~tptGSHKiN 113 (432)
T COG1350 39 RPELLKKIFPKKLIEQEFSGERYIKIPEEVREAYL-QIGRPTPLIRAKNLEEALG----TPARIYYKYEGVTPTGSHKIN 113 (432)
T ss_pred CHHHHHHhccHHHHHHHhhhhhcccCcHHHHHHHH-HhCCCCchhhhhhHHHHhC----CCcEEEEEecccCCCCCCCcc
Confidence 45666666666666666653 3444433 3689999999999999985 378999999999999999999
Q ss_pred HHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCC------
Q 021613 163 NAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT------ 236 (310)
Q Consensus 163 ga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~------ 236 (310)
.|+.++..++..|.++++.++++|++|.|++++|+.+|++|+|||-.......+.+..+|+.|||+|+..+++.
T Consensus 114 TAlAqaYyak~eg~~rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk 193 (432)
T COG1350 114 TALAQAYYAKKEGAKRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRK 193 (432)
T ss_pred hHHHHHHHHHhcCceeeecccCCchHHHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999987655445677789999999999887642
Q ss_pred ---------CCHHHHHHHHHHHHHHccCCceeecCCCCCCCChhhhhcccceeccchHHHHHHHHHHHHHhCC
Q 021613 237 ---------ATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWF 300 (310)
Q Consensus 237 ---------~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~~~iv~d~~~v~vGT~G~e~gi~q~l~~~~~ 300 (310)
+++.-|+.+|+++..++ +|..|.+||+.+ | |-=+|+| +|+|+. .| +++.+.
T Consensus 194 ~l~e~p~hPGSLGIAISEAiE~al~~-~~~kY~lGSVln-h-----vllhQTV----iGlEak-kQ-le~~~e 253 (432)
T COG1350 194 ILKEDPDHPGSLGIAISEAIEYALKN-ENTKYSLGSVLN-H-----VLLHQTV----IGLEAK-KQ-LEQAGE 253 (432)
T ss_pred HHhcCCCCCchhHHHHHHHHHHHHhC-CCceecchhHHH-H-----HHHHHHH----HhHHHH-HH-HHhcCC
Confidence 45777899999998877 578999999977 4 2224555 778877 66 555543
No 81
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.91 E-value=9.1e-24 Score=207.31 Aligned_cols=216 Identities=24% Similarity=0.257 Sum_probs=158.8
Q ss_pred CCccCCCccccccchhh-hHHHHHH-----------HHHHhcCChhHHHHHHHHHhhhcCCCCCEEEccccchhhcCCCC
Q 021613 74 GRFGRFGGKFVPETLMY-ALSELES-----------ALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNG 141 (310)
Q Consensus 74 ~~~g~~GG~~vPe~l~~-~~~~i~~-----------a~~~~~~d~~f~~el~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~ 141 (310)
.++..-||.|+|+.+.. .++++.. .|.+.+...+.+.+ .+.. | -||+++++++...++.
T Consensus 21 ~~~c~~cGl~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~---~l~e--g-~tp~~~~~~~~~~l~~--- 91 (411)
T COG0498 21 QGLCPDCGLFLPAEYPYFSLEEIDKLLGLSYPELAWRYLELLPVGEIPAV---SLGE--G-GTPLYKAPALAAPLGV--- 91 (411)
T ss_pred hCcCCcCCcccccccCccchhhhhhhhcccccchHHHHHHHCCCCCcchh---hhhh--c-cCccccCcccchhhcc---
Confidence 46677899999998753 2223322 33333332222211 1121 2 3999999988887721
Q ss_pred CCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHH
Q 021613 142 GGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFR 221 (310)
Q Consensus 142 ~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~ 221 (310)
.+.++|+|.|++|||||||||++...+..+.+.|. ..|+++|+||+|.|+|+++++.|++|+|++|.+-. +..|+.+
T Consensus 92 ~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~v--s~~k~~q 168 (411)
T COG0498 92 LNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-KTILCASSGNTGASAAAYAARAGLKVFVLYPKGKV--SPGKLAQ 168 (411)
T ss_pred CCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-CEEEEeCCchHHHHHHHHhccCCCeEEEEecCCCC--CHHHHHH
Confidence 12469999999999999999999999999999986 46789999999999999999999999999999833 6789999
Q ss_pred HHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeecCCCCCCCChh----------------hhhcccceeccchH
Q 021613 222 MRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYP----------------MMVRDFHATSIGEM 285 (310)
Q Consensus 222 ~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~~----------------~iv~d~~~v~vGT~ 285 (310)
|..+||+++.+++ ++||+.+.+.+. .++.. ..|...+ .+|+. +..+|+.+||+|.+
T Consensus 169 ~~~~ga~~i~v~G---~fDda~~~vk~~-~~~~~-~~~~~ns---iNp~rlegq~t~~fe~~~ql~~~~p~~v~vPvGn~ 240 (411)
T COG0498 169 MLTLGAHVIAVDG---NFDDAQELVKEA-ANREG-LLSAVNS---INPYRLEGQKTYAFEIAEQLGWKAPDHVVVPVGNG 240 (411)
T ss_pred HHhcCCEEEEEcC---cHHHHHHHHHHH-HhhCC-ceeeccc---cCHHHhhhhhhhHhHHHHHhCCCCCCeEEEeCCch
Confidence 9999999999986 688875554443 33212 1232211 13332 12488889999999
Q ss_pred HHHHHHHHHHHHhCC-ccccccCcc
Q 021613 286 GWETRCADCMRWWWF-KCHGSLPRI 309 (310)
Q Consensus 286 G~e~gi~q~l~~~~~-~~~~~~Pr~ 309 (310)
|.+++++.++++.-+ |.+...|++
T Consensus 241 gni~a~~~g~~~~~~~g~i~~~p~~ 265 (411)
T COG0498 241 GNLLAIYKGFKEGLPIGKIDKAPNM 265 (411)
T ss_pred HHHHHHHHHHHhcccccchhcCchh
Confidence 999999999999887 888888874
No 82
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=194.29 Aligned_cols=199 Identities=22% Similarity=0.216 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhcCChhHHH-H--HHHHHhhhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHH
Q 021613 92 LSELESALHKLADDRDFQE-E--LSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (310)
Q Consensus 92 ~~~i~~a~~~~~~d~~f~~-e--l~~~l~~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l 168 (310)
+.-|..+|........++. + .-+-+.+.+|+ |||+++..|++.. |++|+.|.|++||.||-|||.|++++
T Consensus 16 ~~~L~~~y~s~r~~s~~ktke~~~~~Gv~~~IGn-Tpliri~sLs~aT------GcnIlaK~Ef~NPggS~KDRvAl~ii 88 (391)
T KOG1481|consen 16 ISVLIGAYASYRATSGIKTKEPGIVSGVEGAIGN-TPLIRINSLSNAT------GCNILAKAEFLNPGGSVKDRVALYII 88 (391)
T ss_pred HHHHHHHHHHHHHhhcccccCCCccchhHHhhCC-CceEEeecccccc------ccchhhhhhccCCCCChhhhhHHHHH
Confidence 3445555554444333331 1 11245667885 9999999999987 89999999999999999999999999
Q ss_pred HHhhhcCC---CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCC-CCHHHHHH
Q 021613 169 LLAKRLGK---TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT-ATLKDATS 244 (310)
Q Consensus 169 ~~a~~~g~---~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~-~~~~da~~ 244 (310)
..|++.|+ ..+|++.++|++|+++|..|..+|.+|+|+||++. +..|.+.++.+||+|..|+... -+-..-++
T Consensus 89 r~Aee~GkL~~gg~v~EGtaGsTgIslA~v~~a~Gyk~~I~mPddq---s~eK~~ile~LGA~V~rV~pa~i~dp~~yvn 165 (391)
T KOG1481|consen 89 RTAEEKGKLVRGGTVVEGTAGSTGISLAHVARALGYKCHIYMPDDQ---SQEKSDILEFLGAEVHRVPPAPIVDPNHYVN 165 (391)
T ss_pred HHHHHcCCcccCceEEecCCCccchhHHHhhhhcCcceEEECCChH---HHHHHHHHHHhcceeeecCCcCccChhHHHH
Confidence 99999885 56899999999999999999999999999999987 6889999999999999987642 12223334
Q ss_pred HHHHHHHHccCCce----------eecCCCCCCC---Chhhhhcccc------eeccchHHHHHHHHHHHHHhCCc
Q 021613 245 EAIRDWVTNVETTH----------YILGSVAGPH---PYPMMVRDFH------ATSIGEMGWETRCADCMRWWWFK 301 (310)
Q Consensus 245 ~a~~~~~~~~~~~~----------Yi~gs~~~~h---p~~~iv~d~~------~v~vGT~G~e~gi~q~l~~~~~~ 301 (310)
.|.+. .++..+.. |-+..++-.| +.|+||.+.. +.+.||||+++|+.++|++..++
T Consensus 166 ~Arr~-an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~ 240 (391)
T KOG1481|consen 166 QARRA-ANETPNASNGIRGWFADQFENVANWLAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDG 240 (391)
T ss_pred HHHHH-hhhcccccCCcccchhhhhcCHHHHHHHhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCC
Confidence 44432 22211111 1112333334 5678876642 45699999999999999998774
No 83
>PRK09225 threonine synthase; Validated
Probab=99.86 E-value=6.9e-21 Score=190.08 Aligned_cols=205 Identities=15% Similarity=0.113 Sum_probs=146.2
Q ss_pred CCccCCCccccccchhh------------hHHHHHHHHHHhcCChhHH-HHHHHHHhhhcC-C----CCCEEEccccchh
Q 021613 74 GRFGRFGGKFVPETLMY------------ALSELESALHKLADDRDFQ-EELSGILRDYVG-R----ETPLYFAERLTEH 135 (310)
Q Consensus 74 ~~~g~~GG~~vPe~l~~------------~~~~i~~a~~~~~~d~~f~-~el~~~l~~~vg-~----~TPL~~~~~Ls~~ 135 (310)
..+..-||+|||+.+.. ++.+|....-+.+..++|+ ++|.+++..... + .+||.++
T Consensus 21 ~Gla~DGGLyvP~~~P~l~~~~~~~~~~~sy~~~a~~il~~f~~~~i~~~~l~~~i~~ay~~F~~~~~~pl~~l------ 94 (462)
T PRK09225 21 QGLAPDGGLYVPEELPKLSAEEIDALLGLSYAELAFEILSAFVGDDIPEDDLKAIIARAYTTFDHPAIAPLVQL------ 94 (462)
T ss_pred cCCCCCCceEeCcccCCCCHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCCcCccceEEe------
Confidence 35667899999999764 5567777777777666677 677777776543 3 3788876
Q ss_pred hcCCCCCCCeEEEEecCCCCCCChHHHHHHH---HHHHhhhcCCCeEEEecCcchHHHHH-HHHHHHcCCeEEEEeCCCc
Q 021613 136 YRRPNGGGPHIYLKREDLNHTGAHKINNAVG---QALLAKRLGKTRIIAETGAGQHGVAT-ATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 136 ~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~---~l~~a~~~g~~~~Vv~aSsGNhg~Al-A~aaa~~Gi~~~Ivmp~~~ 211 (310)
+.++|+...+++||||||||++.. .+..+.+ +....|+++||||+|.|+ |.++.+.|++|+|++|.+.
T Consensus 95 -------~~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g~ 166 (462)
T PRK09225 95 -------DDNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GEKITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGK 166 (462)
T ss_pred -------CCCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CCCcEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCCC
Confidence 346899999999999999999877 6666666 545678899999999999 7888899999999999973
Q ss_pred hhchHHHHHHHHHC-CCEEEEEcCCCCCHHHHHHHHHHHHHHc-cC--CceeecCCCCCCCChhhh--------------
Q 021613 212 MERQALNVFRMRLL-GAEVRAVHSGTATLKDATSEAIRDWVTN-VE--TTHYILGSVAGPHPYPMM-------------- 273 (310)
Q Consensus 212 ~~~~~~kv~~~~~~-GA~Vv~v~~~~~~~~da~~~a~~~~~~~-~~--~~~Yi~gs~~~~hp~~~i-------------- 273 (310)
. +..+..+|..+ |++|..+... ++++|+.....+...+. .. ...|...| .+|++.+
T Consensus 167 v--s~~q~~Qm~t~~g~nv~vi~V~-G~fDD~q~~vk~~~~d~~~~~~~~l~saNS---iN~~Ri~gQ~~yyfea~~ql~ 240 (462)
T PRK09225 167 V--SPVQEKQMTTLQGDNIHVVAVE-GNFDDCQALVKAAFNDEELKEKLKLSSANS---INIGRLLAQIVYYFYAYLQLG 240 (462)
T ss_pred C--CHHHHHHHHhhcCCCeEEEEeC-CCHHHHHHHHHHHhhchhhhhcCceEEEec---cCHHHHHHHHHHHHHHHHHhc
Confidence 3 57788999999 9988444333 47888755443333221 00 11232222 1333221
Q ss_pred ----hcccceeccchHHHHHHHHHHHHHhC
Q 021613 274 ----VRDFHATSIGEMGWETRCADCMRWWW 299 (310)
Q Consensus 274 ----v~d~~~v~vGT~G~e~gi~q~l~~~~ 299 (310)
.++..+||+|.+|.+.+...+ +++|
T Consensus 241 ~~~~~p~~~vVPtGnfgni~a~~~A-k~mG 269 (462)
T PRK09225 241 IEAGEKVNFSVPSGNFGNILAGYYA-KKMG 269 (462)
T ss_pred cccCCCCEEEEECCcHHHHHHHHHH-HHcC
Confidence 256788999999999997776 5554
No 84
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.85 E-value=2.8e-20 Score=185.73 Aligned_cols=204 Identities=16% Similarity=0.104 Sum_probs=144.5
Q ss_pred CCccCCCccccccchhh------------hHHHHHHHHHHhcCChhHH-HHHHHHHhhhcC-CC----CCEEEccccchh
Q 021613 74 GRFGRFGGKFVPETLMY------------ALSELESALHKLADDRDFQ-EELSGILRDYVG-RE----TPLYFAERLTEH 135 (310)
Q Consensus 74 ~~~g~~GG~~vPe~l~~------------~~~~i~~a~~~~~~d~~f~-~el~~~l~~~vg-~~----TPL~~~~~Ls~~ 135 (310)
..+..-||+|||+.+.. ++.+|.....+.+.+++|+ ++|++++..... ++ +||.++
T Consensus 20 ~Gla~DGGLyvP~~~P~~~~~~~~~~~~~sy~~~a~~vl~~f~~~~i~~~~L~~~i~~ay~~F~~~~~~pl~~l------ 93 (460)
T cd01560 20 SGLAPDGGLYVPEELPKLSAEEIASWSGLSYQELAFEVLSLFIGDEIPEDDLKSLIDRAYSFFRHPDIAPLVQL------ 93 (460)
T ss_pred cCCCCCCceecCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCccceEEe------
Confidence 45667899999999753 5677777777777767787 678888876542 22 777776
Q ss_pred hcCCCCCCCeEEEEecCCCCCCChHHHHHHHH---HHHhhhc-CCCeEEEecCcchHHHHH-HHHHHHcCCeEEEEeCCC
Q 021613 136 YRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ---ALLAKRL-GKTRIIAETGAGQHGVAT-ATVCARFGLQCIVYMGAQ 210 (310)
Q Consensus 136 ~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~---l~~a~~~-g~~~~Vv~aSsGNhg~Al-A~aaa~~Gi~~~Ivmp~~ 210 (310)
+.++|++.++++||||||||++..+ +..+.+. .....|+++||||+|.|+ |.++.+.|++|+|++|.+
T Consensus 94 -------~~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~g 166 (460)
T cd01560 94 -------GDNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKG 166 (460)
T ss_pred -------CCCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCC
Confidence 4578999999999999999998765 4455443 234567899999999995 888889999999999997
Q ss_pred chhchHHHHHHHHHCCC---EEEEEcCCCCCHHHHHHHHHHHHHHc-c--CCceeecCCCCCCCChhhh-----------
Q 021613 211 DMERQALNVFRMRLLGA---EVRAVHSGTATLKDATSEAIRDWVTN-V--ETTHYILGSVAGPHPYPMM----------- 273 (310)
Q Consensus 211 ~~~~~~~kv~~~~~~GA---~Vv~v~~~~~~~~da~~~a~~~~~~~-~--~~~~Yi~gs~~~~hp~~~i----------- 273 (310)
.. +..+..+|..+|+ +++.|++ +++|+...+.+...+. . ....|...| .+|++.+
T Consensus 167 ~v--s~~Q~~Qm~t~g~~Nv~vi~V~G---~fDd~q~~vk~~~~d~~~~~~~~l~saNS---iN~~Ri~~Q~~yyf~a~~ 238 (460)
T cd01560 167 GV--SPIQELQMTTLPADNVHVVAVEG---DFDDCQSLVKALFADEDFNKKLKLSSANS---INWARILAQIVYYFYAYL 238 (460)
T ss_pred CC--CHHHHHHHHhhCCCceEEEEEcC---CHHHHHHHHHHHhcChhhHhcceEEEEec---cCHHHHHHHHHHHHHHHH
Confidence 33 5788899999996 7777774 6888755443332211 0 011222222 1332211
Q ss_pred --------hcccceeccchHHHHHHHHHHHHHhC
Q 021613 274 --------VRDFHATSIGEMGWETRCADCMRWWW 299 (310)
Q Consensus 274 --------v~d~~~v~vGT~G~e~gi~q~l~~~~ 299 (310)
+++..+||+|.+|.+.+...+. ++|
T Consensus 239 ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak-~mG 271 (460)
T cd01560 239 QLLKRGEGEKVEFSVPTGNFGNILAGYYAK-KMG 271 (460)
T ss_pred HhccccCCCCCEEEEECCcHHHHHHHHHHH-HcC
Confidence 3566789999999999977763 444
No 85
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.70 E-value=2.1e-16 Score=148.16 Aligned_cols=173 Identities=25% Similarity=0.301 Sum_probs=132.1
Q ss_pred hhcCCCCCEEEccccchhhcCCCCCCCeEEEEecCCCC--CCChHHHHHHHHHHHhhhcCCCeEEEecCcc--hHHHHHH
Q 021613 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNH--TGAHKINNAVGQALLAKRLGKTRIIAETGAG--QHGVATA 193 (310)
Q Consensus 118 ~~vg~~TPL~~~~~Ls~~~~~~~~~g~~I~lK~E~lnp--TGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsG--Nhg~AlA 193 (310)
+++..|||+.+++++++.+ |.+||+||||+.+ .|+||+|+..+.+..|.+.|.+.. ++.++- ||..++|
T Consensus 10 ~l~~~pTPiq~L~rls~~l------g~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~dTl-vT~GgiQSNh~r~tA 82 (323)
T COG2515 10 ELIFGPTPIQKLPRLSAHL------GVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGADTL-VTYGGIQSNHVRQTA 82 (323)
T ss_pred ccCCCCChhhhHHHHHHhc------CeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCcEE-EEecccchhHHHHHH
Confidence 4566799999999999998 7999999999966 789999999999999999999854 566664 9999999
Q ss_pred HHHHHcCCeEEEEeCCCc-hhchHHHHHHHHHCCCEEEEEcCCCCCH--HHHHHHHHHHHHHccCCceeecCCCCCCCCh
Q 021613 194 TVCARFGLQCIVYMGAQD-MERQALNVFRMRLLGAEVRAVHSGTATL--KDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (310)
Q Consensus 194 ~aaa~~Gi~~~Ivmp~~~-~~~~~~kv~~~~~~GA~Vv~v~~~~~~~--~da~~~a~~~~~~~~~~~~Yi~gs~~~~hp~ 270 (310)
++|+++|++|+.++.... ......|+...+.+|++++.++.+. +. .....+..++..++. +..|+++..- .||+
T Consensus 83 avA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~-d~~~~~~~~~~~e~~~~~g-~kpyvIp~GG-~~~~ 159 (323)
T COG2515 83 AVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGT-DIGINASAEELAEEVRKQG-GKPYVIPEGG-SSPL 159 (323)
T ss_pred HHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCC-ChhhchhhHHHHHHHHhcC-CCCcEeccCC-cCcc
Confidence 999999999999996543 1224568888999999999999864 33 222334444445554 4456554443 3653
Q ss_pred hhh-----------------hcccceeccchHHHHHHHHHHHHHhCC
Q 021613 271 PMM-----------------VRDFHATSIGEMGWETRCADCMRWWWF 300 (310)
Q Consensus 271 ~~i-----------------v~d~~~v~vGT~G~e~gi~q~l~~~~~ 300 (310)
+.. ..|++++..||+|+.+|+.-++...++
T Consensus 160 g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~ 206 (323)
T COG2515 160 GALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGP 206 (323)
T ss_pred ccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccC
Confidence 321 356677889999999999888887655
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.00 E-value=7.5e-10 Score=104.52 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=100.8
Q ss_pred CCCEEEccccchhhcC--CCCCCCeEEEEecCCCC-CCChHHHHHHHHHH-Hhhh----cCC------------------
Q 021613 123 ETPLYFAERLTEHYRR--PNGGGPHIYLKREDLNH-TGAHKINNAVGQAL-LAKR----LGK------------------ 176 (310)
Q Consensus 123 ~TPL~~~~~Ls~~~~~--~~~~g~~I~lK~E~lnp-TGSfK~Rga~~~l~-~a~~----~g~------------------ 176 (310)
++||++.+.+.+.+.+ ...-..++|+|++++-| +||.|.||-++.++ +|++ .|.
T Consensus 78 ES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~F 157 (443)
T COG3048 78 ESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDF 157 (443)
T ss_pred ccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHH
Confidence 5888887665433210 11223589999999999 89999999877665 3432 231
Q ss_pred --CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 021613 177 --TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (310)
Q Consensus 177 --~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~ 254 (310)
+--|...|+||.|.++....+.+|.+++|.|..++ .++|..++|+.|.+|+..+. +|..|+++-.+....+
T Consensus 158 Fs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADA---r~WKKd~LRs~gV~ViEYe~---DY~~AVeeGRk~a~~D- 230 (443)
T COG3048 158 FSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADA---RAWKKDKLRSHGVTVVEYEQ---DYGVAVEEGRKEAESD- 230 (443)
T ss_pred HHhheEeecccCccceehhhhhhhhcceEEEEecchH---HHHHHHHHHhcCceEEEecc---hhhHHHHHhhhhhccC-
Confidence 12366789999999999999999999999999988 78999999999999999986 5778888876655443
Q ss_pred CCceeec
Q 021613 255 ETTHYIL 261 (310)
Q Consensus 255 ~~~~Yi~ 261 (310)
++.+|+.
T Consensus 231 P~c~FiD 237 (443)
T COG3048 231 PNCFFID 237 (443)
T ss_pred CceEEec
Confidence 5667764
No 87
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=89.69 E-value=0.34 Score=37.24 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=18.5
Q ss_pred CccCCCccccccchhhhHHHHHHHHHHhcCChhHHHHHHHHHhhhc
Q 021613 75 RFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYV 120 (310)
Q Consensus 75 ~~g~~GG~~vPe~l~~~~~~i~~a~~~~~~d~~f~~el~~~l~~~v 120 (310)
....-||+|||+.+.. +...+.+.+.+-.|.+....+++.++
T Consensus 21 GlA~DGGLyvP~~iP~----l~~~~l~~l~~~sy~elA~~il~~f~ 62 (79)
T PF14821_consen 21 GLAPDGGLYVPEEIPK----LSKEELEELKNLSYAELAFEILSPFL 62 (79)
T ss_dssp -SBTTSB-EEESS---------HHHHHHHTTS-HHHHHHHHHHHHC
T ss_pred CCCCCCeeEecCcCCC----CCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3467899999998653 22222223333444444444444444
No 88
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=84.87 E-value=4.8 Score=35.87 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=40.6
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcC
Q 021613 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~ 234 (310)
++|...+|+-|..++.+....+.++++++.... ....+.++..|++++..+-
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~----~~~~~~l~~~g~~vv~~d~ 52 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS----SDRAQQLQALGAEVVEADY 52 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH----HHHHHHHHHTTTEEEES-T
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc----hhhhhhhhcccceEeeccc
Confidence 356788899999999999999999999997763 3345667888999875543
No 89
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=84.86 E-value=10 Score=31.34 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=50.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCC-chhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQ-DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~-~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
..+|+.+++.-|.++|....+.|-..++++... ..+........++..|.++..+..+-.+ .+.++...+...+.
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSD-PESIRALIEEVIKR 77 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTS-HHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 467788889999999999999977766666555 2222233445667889999888865333 34456666655533
No 90
>PRK06128 oxidoreductase; Provisional
Probab=79.48 E-value=26 Score=32.59 Aligned_cols=75 Identities=16% Similarity=0.085 Sum_probs=46.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
+.++|+.++|--|.++|....+.|.++++..............+.++..|.++..+..+-.+. +.+.++++...+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~v~~~~~~~~~ 130 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDE-AFCRQLVERAVK 130 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCH-HHHHHHHHHHHH
Confidence 357788888999999999999999998776533221112233455667788877766543233 334444444443
No 91
>PRK12937 short chain dehydrogenase; Provisional
Probab=78.36 E-value=34 Score=30.14 Aligned_cols=76 Identities=18% Similarity=0.096 Sum_probs=48.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~ 254 (310)
+.++|+.++|.-|.++|....+.|.+++++...... ....-.+.++.+|.++..+..+-.+. +.+.++++...+++
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~~ 81 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAA-AADELVAEIEAAGGRAIAVQADVADA-AAVTRLFDAAETAF 81 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHH-HHHHHHHHHHhcCCeEEEEECCCCCH-HHHHHHHHHHHHHc
Confidence 357788888999999999999999988776543321 11223345566788887776543333 33455555444433
No 92
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=78.27 E-value=30 Score=30.96 Aligned_cols=74 Identities=19% Similarity=0.154 Sum_probs=45.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|.-|.++|......|.+++++..... ........++..|.++..+..+-.+. +.++++.+...++
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~i~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 84 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA--KLAAAAESLKGQGLSAHALAFDVTDH-DAVRAAIDAFEAE 84 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCceEEEEEccCCCH-HHHHHHHHHHHHh
Confidence 35788888899999999999999998766543322 11222345566677777765543333 3345545444333
No 93
>PRK12743 oxidoreductase; Provisional
Probab=77.80 E-value=33 Score=30.78 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=46.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.++|+.++|.-|.++|....+.|.+++++....... ...-...++.+|.++..+..+-.+.+ .++.+++...++
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~ 77 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEG-AKETAEEVRSHGVRAEIRQLDLSDLP-EGAQALDKLIQR 77 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHH-HHHHHHHHHhcCCceEEEEccCCCHH-HHHHHHHHHHHH
Confidence 467788888999999999999999887765433211 12223456678888877665433332 234444444333
No 94
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=76.88 E-value=38 Score=30.17 Aligned_cols=57 Identities=18% Similarity=0.054 Sum_probs=40.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
+.++|+.++|.-|.++|......|.+++++...... ...-.+.++..|.++..+..+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDG--ANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHH--HHHHHHHHHhcCceEEEEECC
Confidence 357788888999999999999999987766544321 222344566678888776654
No 95
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=76.79 E-value=34 Score=31.05 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=46.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|.-|.++|....+.|.+++++-..... .....+.++..|.++..+..+-.+. +.+..+++...++
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~-~~v~~~~~~~~~~ 84 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEK--AEAVVAEIKAAGGEALAVKADVLDK-ESLEQARQQILED 84 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCeEEEEECCCCCH-HHHHHHHHHHHHH
Confidence 456778888999999999999999987776544221 1222344556687877666543232 3344444444443
No 96
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=76.71 E-value=18 Score=31.74 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC------CchhchHHHHHHHHHCCCEE
Q 021613 156 TGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGA------QDMERQALNVFRMRLLGAEV 229 (310)
Q Consensus 156 TGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~------~~~~~~~~kv~~~~~~GA~V 229 (310)
.--|-++.....+.+|.+.|.+.+|+++++|.++.-++-+...- +++++|.-. +..+-...-.+.++..|++|
T Consensus 8 G~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v 86 (186)
T COG1751 8 GKENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKV 86 (186)
T ss_pred cccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHHcCcee
Confidence 33456777777888999999999999999999887765554433 888777621 22222344556788899999
Q ss_pred EEEc
Q 021613 230 RAVH 233 (310)
Q Consensus 230 v~v~ 233 (310)
+.-.
T Consensus 87 ~~~s 90 (186)
T COG1751 87 LTQS 90 (186)
T ss_pred eeeh
Confidence 7643
No 97
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=76.15 E-value=35 Score=30.51 Aligned_cols=73 Identities=16% Similarity=0.117 Sum_probs=45.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|.-|.++|....+.|.+++++-.... .......++..|.++..+..+-.+.+ .+..+++...++
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~ 81 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL---VHEVAAELRAAGGEALALTADLETYA-GAQAAMAAAVEA 81 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH---HHHHHHHHHhcCCeEEEEEEeCCCHH-HHHHHHHHHHHH
Confidence 35778888899999999999999998776644321 12233445566877766554322332 334444444443
No 98
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=75.37 E-value=18 Score=26.88 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.9
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
+--++|..|.-+|.+.+.+|.+++++.....
T Consensus 3 vViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 3 VVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred EEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 3469999999999999999999999987643
No 99
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=74.67 E-value=37 Score=30.54 Aligned_cols=72 Identities=13% Similarity=0.030 Sum_probs=45.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.+++.-|.++|....+.|.+++++-.... ....+.++..|.++..+..+-.+. +.+..+++...++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~ 80 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA----PETQAQVEALGRKFHFITADLIQQ-KDIDSIVSQAVEV 80 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH----HHHHHHHHHcCCeEEEEEeCCCCH-HHHHHHHHHHHHH
Confidence 45678888889999999999999999877643221 222345566788876665443233 3345555544443
No 100
>PRK07109 short chain dehydrogenase; Provisional
Probab=74.31 E-value=34 Score=32.66 Aligned_cols=74 Identities=20% Similarity=0.199 Sum_probs=47.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|--|.++|....+.|.+++++..... ......+.++..|+++..+..+-.+. +.++.+.+...++
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~--~l~~~~~~l~~~g~~~~~v~~Dv~d~-~~v~~~~~~~~~~ 82 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEE--GLEALAAEIRAAGGEALAVVADVADA-EAVQAAADRAEEE 82 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHHcCCcEEEEEecCCCH-HHHHHHHHHHHHH
Confidence 45778888889999999999999998777654322 12223445667888887766543333 3345544444433
No 101
>PRK06194 hypothetical protein; Provisional
Probab=74.25 E-value=46 Score=30.28 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=45.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|.-|.++|....+.|.+++++-.... ........+...|.++..+..+-.+. +.+.++.+...++
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~d~-~~~~~~~~~~~~~ 80 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQD--ALDRAVAELRAQGAEVLGVRTDVSDA-AQVEALADAALER 80 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChH--HHHHHHHHHHhcCCeEEEEECCCCCH-HHHHHHHHHHHHH
Confidence 35788888899999999999999998776643221 11223344555577887776543333 2344444444333
No 102
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=74.09 E-value=38 Score=30.01 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=45.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|.-|.++|......|.+++++-.... ....+.++.++.++..+..+-.+. +.+..+++...++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~----~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 77 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP----SETQQQVEALGRRFLSLTADLSDI-EAIKALVDSAVEE 77 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH----HHHHHHHHhcCCceEEEECCCCCH-HHHHHHHHHHHHH
Confidence 34677888889999999999999998777653221 223345566777776666543333 3344444444433
No 103
>PRK08226 short chain dehydrogenase; Provisional
Probab=73.89 E-value=40 Score=30.19 Aligned_cols=73 Identities=16% Similarity=0.071 Sum_probs=44.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|.-|.++|......|.+++++-.... .......++..|.++..+..+-.+. +.++.+++...++
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~-~~v~~~~~~~~~~ 79 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPE---IEKLADELCGRGHRCTAVVADVRDP-ASVAAAIKRAKEK 79 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH---HHHHHHHHHHhCCceEEEECCCCCH-HHHHHHHHHHHHH
Confidence 45778888899999999999999999776643322 1122334445577776655443232 3345545444443
No 104
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=73.51 E-value=27 Score=32.58 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=35.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v 232 (310)
+.+++...+|--|.+++..|+.+|.+++++... ..|.+.++.+|++.++.
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s------~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS------DEKVAYLKKLGFDVAFN 189 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCCEEEe
Confidence 355565657899999999999999986554432 34667778899865554
No 105
>PRK07035 short chain dehydrogenase; Provisional
Probab=73.23 E-value=50 Score=29.34 Aligned_cols=75 Identities=13% Similarity=0.051 Sum_probs=45.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~ 254 (310)
+.++|+.++|.-|.+++....+.|.+++++-..... .....+.+...|.++..+..+-.+.+ .++.+++...+..
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~~ 83 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDG--CQAVADAIVAAGGKAEALACHIGEME-QIDALFAHIRERH 83 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCeEEEEEcCCCCHH-HHHHHHHHHHHHc
Confidence 357788888999999999999999987776543221 12223344556777666554433333 3455555554443
No 106
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=72.38 E-value=50 Score=29.29 Aligned_cols=74 Identities=18% Similarity=0.112 Sum_probs=46.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~ 254 (310)
..+|+.++|.-|.++|....+.|.+++++-.... +.....+.++..|.++..+..+-.+ .+.+.++++...++.
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~~ 75 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEE--TAKETAKEINQAGGKAVAYKLDVSD-KDQVFSAIDQAAEKF 75 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 3577888899999999999999998766643322 1122334566678777766544222 334555555554443
No 107
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=72.26 E-value=30 Score=32.54 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=35.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHH-CCCEEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGAEVRAV 232 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~-~GA~Vv~v 232 (310)
+.+++.+.+|.-|.+++..|+.+|.++++.... ..|.+.++. +|++-+.-
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~------~~~~~~~~~~lGa~~vi~ 203 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS------DEKVDLLKNKLGFDDAFN 203 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHhcCCceeEE
Confidence 456666666999999999999999985554322 346667776 89865443
No 108
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=72.01 E-value=58 Score=28.76 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=45.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
..+|+.++|.-|.++|....+.|.+.+++...... +.......++..|++++.+..+-.+. +.+.++++...+
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~ 77 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSP-RRVKWLEDQKALGFDFIASEGNVGDW-DSTKAAFDKVKA 77 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChH-HHHHHHHHHHhcCCcEEEEEcCCCCH-HHHHHHHHHHHH
Confidence 46778888999999999999999887665432221 12233455666788887665443333 334444444333
No 109
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=71.86 E-value=47 Score=29.22 Aligned_cols=74 Identities=22% Similarity=0.093 Sum_probs=45.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
++++|+.++|.-|.+++....+.|.+++++...... .......++..+.++..+..+-.+. +.+..+++...++
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~--~~~~~~~l~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~ 80 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDD--AAATAELVEAAGGKARARQVDVRDR-AALKAAVAAGVED 80 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCeEEEEECCCCCH-HHHHHHHHHHHHH
Confidence 357788888999999999999999987776543221 1223344566677776665543232 3345555444433
No 110
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=71.84 E-value=50 Score=29.57 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=46.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~ 254 (310)
+.++|+.++|.-|.++|......|.+++++..... .....+.+...|.++..+..+-.+ .+.+..+++...++.
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTN---WDETRRLIEKEGRKVTFVQVDLTK-PESAEKVVKEALEEF 89 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcH---HHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 45777888889999999999999999888765421 122233445567777666554333 333455555544443
No 111
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.77 E-value=60 Score=28.56 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=45.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
+.++|+.++|..|.++|......|.+++++...... ...-...++..|.++..+..+-.+. +.+..+++...+
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~ 80 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEEN--LKAVAEEVEAYGVKVVIATADVSDY-EEVTAAIEQLKN 80 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHHhCCeEEEEECCCCCH-HHHHHHHHHHHH
Confidence 357788888999999999988999987776543221 1112234456677887766543333 334455554433
No 112
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=71.57 E-value=36 Score=31.46 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=36.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~ 233 (310)
+.+++...+|.-|.++...|+.+|.+++++.. +..|.+.++.+|++-+...
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~------s~~~~~~l~~~Ga~~vi~~ 195 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG------SDDKVAWLKELGFDAVFNY 195 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeC------CHHHHHHHHHcCCCEEEeC
Confidence 35666666799999999999999998554432 2346677888998655443
No 113
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.52 E-value=58 Score=28.76 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=46.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.++|+.++|.-|.++|....+.|.++++++..... ....-.+.++..|.++..+..+-.+. +.+..+++...+.
T Consensus 6 ~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 79 (250)
T PRK08063 6 VALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRK-AAEETAEEIEALGRKALAVKANVGDV-EKIKEMFAQIDEE 79 (250)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHHHHhcCCeEEEEEcCCCCH-HHHHHHHHHHHHH
Confidence 57788888999999999999999987765433321 11222345666788887776543233 2344444444333
No 114
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.49 E-value=55 Score=28.91 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=46.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++++.++|--|.++|......|.++++....... .....+..++..|.++..+..+-.+ .+.+..+.+.+.+.
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 81 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAE-EMNETLKMVKENGGEGIGVLADVST-REGCETLAKATIDR 81 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChH-HHHHHHHHHHHcCCeeEEEEeccCC-HHHHHHHHHHHHHH
Confidence 357778888899999999999999987665533221 1233445667778877666543222 33344555554443
No 115
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=71.17 E-value=52 Score=28.69 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=38.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
++++++.++|.-|..++......|.+++++...... ...-...++..|.++..+..+
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~D 62 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEA--AEALAAELRAAGGEARVLVFD 62 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhH--HHHHHHHHHhcCCceEEEEcc
Confidence 357888889999999999999999996555543221 112234455678888776643
No 116
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=70.97 E-value=60 Score=28.29 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=45.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
+.++++.++|.-|.+++....+.|.+++++...... ........++..+.++..+..+-.+ .+.+.++.+...+
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~ 79 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEA-GAEALVAEIGALGGKALAVQGDVSD-AESVERAVDEAKA 79 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHH
Confidence 357788888999999999999999987666543321 1112223455567888777654323 2334454554443
No 117
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=70.92 E-value=49 Score=29.19 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=45.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~ 254 (310)
.++++.++|.-|.++|....+.|.+++++...... ...-...++..+.++..+..+-.+ .+.++.+++.+.++.
T Consensus 5 ~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 5 TAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREA--AEKVAADIRAKGGNAQAFACDITD-RDSVDTAVAAAEQAL 78 (250)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHH--HHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 46788888999999999999999987776543321 111223345557677666654323 334555555555443
No 118
>PRK07454 short chain dehydrogenase; Provisional
Probab=70.68 E-value=48 Score=29.24 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=44.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|.-|.++|....+.|.+++++...... ...-...++..+.++..+..+-.+. +.+..+++...+.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 80 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDA--LEALAAELRSTGVKAAAYSIDLSNP-EAIAPGIAELLEQ 80 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhCCCcEEEEEccCCCH-HHHHHHHHHHHHH
Confidence 356778888999999999999999987776543221 1112233445566776665432233 3344455544443
No 119
>PRK06181 short chain dehydrogenase; Provisional
Probab=70.59 E-value=50 Score=29.57 Aligned_cols=73 Identities=21% Similarity=0.136 Sum_probs=44.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.++|+.++|.-|.++|......|.+++++...... .....+.++..|.++..+..+-.+ .+.+..+++...++
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~--~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 75 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETR--LASLAQELADHGGEALVVPTDVSD-AEACERLIEAAVAR 75 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 46778888999999999999999987776543221 112233455567777666544223 23345555554444
No 120
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=70.46 E-value=45 Score=29.92 Aligned_cols=72 Identities=11% Similarity=0.067 Sum_probs=45.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+..+|+.++|.-|.++|....+.|.+++++-... .....+.++.+|.++..+..+-.+. +.+..+++...++
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~ 82 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE----PTETIEQVTALGRRFLSLTADLRKI-DGIPALLERAVAE 82 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc----hHHHHHHHHhcCCeEEEEECCCCCH-HHHHHHHHHHHHH
Confidence 3577888899999999999999999876552221 2233455666677776665543232 3344445444443
No 121
>PRK07478 short chain dehydrogenase; Provisional
Probab=70.43 E-value=57 Score=29.08 Aligned_cols=73 Identities=21% Similarity=0.117 Sum_probs=45.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
..+|+.++|.-|.++|..-.+.|.+++++..... ....-...++..|.++..+..+-.+. +.+..+.+...++
T Consensus 8 ~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 80 (254)
T PRK07478 8 VAIITGASSGIGRAAAKLFAREGAKVVVGARRQA--ELDQLVAEIRAEGGEAVALAGDVRDE-AYAKALVALAVER 80 (254)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEcCCCCH-HHHHHHHHHHHHh
Confidence 5677888889999999999999998776643321 11122344566787777665543333 3345555544444
No 122
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=70.33 E-value=65 Score=28.44 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=44.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
.++|+.++|.-|.++|....+.|.++++...... +........++..+.++..+..+-.+. +.+.++++...+
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~ 76 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDA-AAAEETADAVRAAGGRACVVAGDVANE-ADVIAMFDAVQS 76 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhcCCcEEEEEeccCCH-HHHHHHHHHHHH
Confidence 5778888889999999999999988766543321 112223445666788877776543233 234444444333
No 123
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=70.25 E-value=26 Score=33.55 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEc
Q 021613 186 GQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (310)
Q Consensus 186 GNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~ 233 (310)
+|.+.++..+++++|++++++.|....- +..-++.++..|++|...+
T Consensus 162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~~~-~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 162 GRTVHSLAEALTRFGVEVYLISPEELRM-PKEILEELKAKGIKVRETE 208 (301)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCccccC-CHHHHHHHHHcCCEEEEEC
Confidence 4899999999999999999999987411 2333455555677665543
No 124
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=70.09 E-value=78 Score=27.95 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=45.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|.-|.++|..-...|.+++++...... .......++..|.++..+..+-.+. +.+.++++...++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~ 78 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEA--AAAAAEALQKAGGKAIGVAMDVTDE-EAINAGIDYAVET 78 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHH--HHHHHHHHHhcCCcEEEEEcCCCCH-HHHHHHHHHHHHH
Confidence 357788888999999999999999988777554321 1222234555677776665443222 3344444444333
No 125
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.02 E-value=69 Score=28.39 Aligned_cols=76 Identities=21% Similarity=0.178 Sum_probs=46.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVE 255 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~ 255 (310)
.++|+.++|.-|.++|..-...|.+++++....... .....+.++..+.++..+..+-.+. +.+..+++...+++.
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~ 79 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEE-LAATQQELRALGVEVIFFPADVADL-SAHEAMLDAAQAAWG 79 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhH-HHHHHHHHHhcCCceEEEEecCCCH-HHHHHHHHHHHHhcC
Confidence 467888889999999999999999887765432211 1223345556677776665543232 334455554444433
No 126
>PRK05866 short chain dehydrogenase; Provisional
Probab=69.99 E-value=53 Score=30.56 Aligned_cols=74 Identities=23% Similarity=0.237 Sum_probs=44.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~ 254 (310)
.++|+.++|.-|.++|...++.|.+++++..... ....-.+.++..|.++..+..+-.+. +.+.++++...+++
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~--~l~~~~~~l~~~~~~~~~~~~Dl~d~-~~v~~~~~~~~~~~ 115 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARRED--LLDAVADRITRAGGDAMAVPCDLSDL-DAVDALVADVEKRI 115 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEccCCCH-HHHHHHHHHHHHHc
Confidence 5778888899999999999999998877654422 11122234445576666555432232 33455555444433
No 127
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=69.87 E-value=56 Score=29.23 Aligned_cols=73 Identities=10% Similarity=0.142 Sum_probs=44.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
+.++|+.++|.-|.++|......|.+++++..... +.......++..|.++..+..+-.+ .+.++.+++.+.+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~i~~~~~~~~~~~~Dl~d-~~~i~~~~~~~~~ 85 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAE--ELEEAAAHLEALGIDALWIAADVAD-EADIERLAEETLE 85 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHH
Confidence 45778888899999999999999998766543321 1112223455667787776654322 2334444444443
No 128
>PRK07890 short chain dehydrogenase; Provisional
Probab=69.86 E-value=50 Score=29.36 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=45.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~ 254 (310)
+.++|+.++|.-|.++|......|.+++++..... ....-...++..|.++..+..+-.+ .+.+..+++...+++
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE--RLDEVAAEIDDLGRRALAVPTDITD-EDQCANLVALALERF 80 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHHhCCceEEEecCCCC-HHHHHHHHHHHHHHc
Confidence 35778888899999999999999998776654321 1112223445557776666544222 333444454444433
No 129
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.69 E-value=56 Score=28.72 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=44.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
..+|+.++|--|.++|......|.+++++..... +.....+.++..|+++..+..+-.+ .+.++++++...+
T Consensus 7 ~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 78 (253)
T PRK08217 7 VIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQE--KLEEAVAECGALGTEVRGYAANVTD-EEDVEATFAQIAE 78 (253)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHH
Confidence 4677777899999999999999988766544322 1122334456668887666543222 2334555554443
No 130
>PRK06182 short chain dehydrogenase; Validated
Probab=69.31 E-value=58 Score=29.49 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=43.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|.-|.++|......|.+++++.... .+++.+...+.+++..+-. + .+.+..+++...++
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~------~~l~~~~~~~~~~~~~Dv~--~-~~~~~~~~~~~~~~ 71 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRV------DKMEDLASLGVHPLSLDVT--D-EASIKAAVDTIIAE 71 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHhCCCeEEEeeCC--C-HHHHHHHHHHHHHh
Confidence 3577888888999999999999999887765332 2334444557776666543 2 23344444444433
No 131
>PRK12939 short chain dehydrogenase; Provisional
Probab=69.15 E-value=60 Score=28.56 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=44.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++++.++|.-|.++|....+.|.+.+++..... ........++..|+++..+..+-.+ .+.+..+++...++
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 81 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAA--EARELAAALEAAGGRAHAIAADLAD-PASVQRFFDAAAAA 81 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 45778888899999999999999998766632211 1122234455667777666544222 23344444444333
No 132
>PRK08628 short chain dehydrogenase; Provisional
Probab=69.12 E-value=61 Score=28.91 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=45.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.++|+.++|--|.++|..-.+.|.+++++..... ...-.+.++..|.++..+..+-.+. +.+..+++...++
T Consensus 9 ~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 80 (258)
T PRK08628 9 VVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP---DDEFAEELRALQPRAEFVQVDLTDD-AQCRDAVEQTVAK 80 (258)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh---hHHHHHHHHhcCCceEEEEccCCCH-HHHHHHHHHHHHh
Confidence 5677888889999999999999999877654332 1122345566787776666543232 3344445444443
No 133
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=69.01 E-value=19 Score=28.72 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 189 g~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
|+.++..|+.+|.+++++-+. ..|++.++.+||+.+.....
T Consensus 3 G~~a~q~ak~~G~~vi~~~~~------~~k~~~~~~~Ga~~~~~~~~ 43 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDRS------EEKLELAKELGADHVIDYSD 43 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEESS------HHHHHHHHHTTESEEEETTT
T ss_pred HHHHHHHHHHcCCEEEEEECC------HHHHHHHHhhcccccccccc
Confidence 555666667777444433321 34566677777766655543
No 134
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=68.81 E-value=46 Score=31.04 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=34.3
Q ss_pred EEEe-cCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEc
Q 021613 179 IIAE-TGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (310)
Q Consensus 179 ~Vv~-aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~ 233 (310)
.++- .++|..|.++...|+.+|.+.+++.+. ..|.+.++.+|++.+...
T Consensus 146 vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~------~~~~~~~~~~g~~~~i~~ 195 (324)
T cd08291 146 AVVHTAAASALGRMLVRLCKADGIKVINIVRR------KEQVDLLKKIGAEYVLNS 195 (324)
T ss_pred EEEEccCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCcEEEEC
Confidence 4443 677889999999999999985544322 346667778898765543
No 135
>PRK12744 short chain dehydrogenase; Provisional
Probab=68.79 E-value=63 Score=28.91 Aligned_cols=75 Identities=17% Similarity=0.122 Sum_probs=44.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCC--chhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQ--DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~--~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.++|+.++|.-|.++|..-...|.+++++.... ..+......+.++..|.++..+..+-.+. +.+.++++...++
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 86 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTA-AAVEKLFDDAKAA 86 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCH-HHHHHHHHHHHHh
Confidence 577788888999999999999999966665321 11112223344556687776665443233 3344545444433
No 136
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.72 E-value=79 Score=27.49 Aligned_cols=72 Identities=21% Similarity=0.155 Sum_probs=43.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (310)
++++|+.++|.-|.+++......|.+.+++....... ...-...++..+.++..+..+-.+. +.+..+++..
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~ 78 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEA-AEELVEAVEALGRRAQAVQADVTDK-AALEAAVAAA 78 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHHHhcCCceEEEECCcCCH-HHHHHHHHHH
Confidence 3578888899999999999999999977665544311 1112233445577776665543233 2344444433
No 137
>PRK07985 oxidoreductase; Provisional
Probab=68.20 E-value=62 Score=30.10 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=44.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
..+|+.++|.-|.++|....+.|.+++++......+....-.+.++..|.++..+..+-.+ .+.+..+++...++
T Consensus 51 ~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 125 (294)
T PRK07985 51 KALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD-EKFARSLVHEAHKA 125 (294)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 5778888899999999999999999876543222111111122344567777665543223 33445555544443
No 138
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=68.15 E-value=84 Score=28.15 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=45.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.++|+.++|.-|.++|....+.|.++++....... ........++..|.++..+..+-.+. +.+.+.++...++
T Consensus 9 ~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~-~~~~~~~~l~~~~~~~~~~~~Dl~~~-~~i~~~~~~~~~~ 82 (261)
T PRK08936 9 VVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEE-EANDVAEEIKKAGGEAIAVKGDVTVE-SDVVNLIQTAVKE 82 (261)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHHHHHcCCeEEEEEecCCCH-HHHHHHHHHHHHH
Confidence 56788888899999999999999987776553321 11223345566688876665432233 3344444444444
No 139
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=67.75 E-value=6.8 Score=33.38 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=26.6
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~ 210 (310)
+.-|+||+|.|+|...+..|.+++++.++.
T Consensus 3 ~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 3 AVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 346999999999999999999999998764
No 140
>PRK08862 short chain dehydrogenase; Provisional
Probab=67.67 E-value=62 Score=28.93 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=44.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
..+|+.+++.-|.++|...++.|.+++++-.... ......+.++..|.+++.+..+..+. +.++..++...++
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~--~l~~~~~~i~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 79 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQDQS--ALKDTYEQCSALTDNVYSFQLKDFSQ-ESIRHLFDAIEQQ 79 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHHHHHHhcCCCeEEEEccCCCH-HHHHHHHHHHHHH
Confidence 4667777778999999999999998766533221 12223455667788776665432233 3344444444433
No 141
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=67.50 E-value=64 Score=29.07 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=45.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.+++.-|.++|......|.+++++-.... ....-...++..|.++..+..+-.+. +.+..+.+...++
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~ 84 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQE--LVDKGLAAYRELGIEAHGYVCDVTDE-DGVQAMVSQIEKE 84 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHHHhcCCceEEEEcCCCCH-HHHHHHHHHHHHh
Confidence 35778888889999999999999998776633221 11222344556688877766543233 3344444444333
No 142
>PRK08643 acetoin reductase; Validated
Probab=67.37 E-value=71 Score=28.44 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=43.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.++|+.++|.-|.++|....+.|.+++++-..... ...-...++..|.++..+..+-.+ .+.+.++++...++
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 76 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEET--AQAAADKLSKDGGKAIAVKADVSD-RDQVFAAVRQVVDT 76 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHH
Confidence 46778888899999999999999987666433221 111123345567777766654322 23345555444433
No 143
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=67.26 E-value=79 Score=27.88 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=46.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|--|.++|....+.|.++++....... ....-...++..|.++..+..+-.+. +.+.++++...++
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 81 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKE-AAENLVNELGKEGHDVYAVQADVSKV-EDANRLVEEAVNH 81 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHH-HHHHHHHHHHhcCCeEEEEECCCCCH-HHHHHHHHHHHHH
Confidence 357778888999999999999999887764432211 11122245566788887776543232 3345555544443
No 144
>PRK08589 short chain dehydrogenase; Validated
Probab=67.12 E-value=68 Score=29.20 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=45.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.++|+.+++--|.++|......|.+++++-.. .. .......++..|.++..+..+-.+. +.+..+.+...++
T Consensus 8 ~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~--~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~ 79 (272)
T PRK08589 8 VAVITGASTGIGQASAIALAQEGAYVLAVDIA-EA--VSETVDKIKSNGGKAKAYHVDISDE-QQVKDFASEIKEQ 79 (272)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HH--HHHHHHHHHhcCCeEEEEEeecCCH-HHHHHHHHHHHHH
Confidence 56778888889999999999999988877544 21 2233445566677766655432222 3344545544444
No 145
>PRK06172 short chain dehydrogenase; Provisional
Probab=66.85 E-value=66 Score=28.56 Aligned_cols=71 Identities=21% Similarity=0.141 Sum_probs=44.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (310)
+.++|+.++|.-|.++|....+.|.+++++...... .....+.++..|.++..+..+-.+ .+.+.++++..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~ 78 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAG--GEETVALIREAGGEALFVACDVTR-DAEVKALVEQT 78 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHH--HHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHH
Confidence 457788888999999999999999987776543221 122234556678777666544222 23344444443
No 146
>PRK06139 short chain dehydrogenase; Provisional
Probab=66.84 E-value=50 Score=31.60 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=45.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
+.+||+.++|--|.++|...++.|.+++++..... +...-.+.++..|+++..+..+-.+ .+.+..+.+...+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~--~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~~~~~ 80 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEE--ALQAVAEECRALGAEVLVVPTDVTD-ADQVKALATQAAS 80 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHH--HHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHH
Confidence 45777888889999999999999998776654322 1122234566789887666543222 2334555544433
No 147
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=66.50 E-value=79 Score=28.43 Aligned_cols=75 Identities=11% Similarity=0.067 Sum_probs=43.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHH-HCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR-LLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~-~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.+++.-|.++|....+.|.+++++...... ......+.++ ..|.++..+..+-.+. +.+.++++...++
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 84 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVE-EANKIAEDLEQKYGIKAKAYPLNILEP-ETYKELFKKIDED 84 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHHHHHhcCCceEEEEcCCCCH-HHHHHHHHHHHHh
Confidence 357778888899999999999999997766433221 1111122232 3576776665543333 3345544444443
No 148
>PRK06949 short chain dehydrogenase; Provisional
Probab=66.46 E-value=73 Score=28.25 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=27.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
+.++|+.++|.-|.++|....+.|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457788888999999999999999987766543
No 149
>PRK05693 short chain dehydrogenase; Provisional
Probab=66.35 E-value=69 Score=29.01 Aligned_cols=66 Identities=11% Similarity=0.037 Sum_probs=42.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
.++|+.++|-.|.++|....+.|.+++++.... .+...+...|.+.+.++-. + .+.+..+++...+
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~------~~~~~~~~~~~~~~~~Dl~--~-~~~~~~~~~~~~~ 68 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKA------EDVEALAAAGFTAVQLDVN--D-GAALARLAEELEA 68 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHCCCeEEEeeCC--C-HHHHHHHHHHHHH
Confidence 467788888999999999999999877765332 2344455567666666543 2 2334444444433
No 150
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=65.91 E-value=89 Score=27.82 Aligned_cols=74 Identities=22% Similarity=0.228 Sum_probs=43.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|.-|.++|....+.|.+++++..... ....-...++..|.++..+..+-.+. +.+..+.+...++
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~--~~~~~~~~l~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~ 83 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAE--RAELAVAKLRQEGIKAHAAPFNVTHK-QEVEAAIEHIEKD 83 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHH--HHHHHHHHHHhcCCeEEEEecCCCCH-HHHHHHHHHHHHh
Confidence 35778888899999999999999987776543221 11122234555576766655432233 3344444444443
No 151
>PRK05876 short chain dehydrogenase; Provisional
Probab=65.75 E-value=82 Score=28.90 Aligned_cols=73 Identities=19% Similarity=0.154 Sum_probs=43.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.++|+.++|.-|.++|...++.|.+++++..... ....-.+.++..|.++..+..+-.+. +.+..+.+...++
T Consensus 8 ~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~--~l~~~~~~l~~~~~~~~~~~~Dv~d~-~~v~~~~~~~~~~ 80 (275)
T PRK05876 8 GAVITGGASGIGLATGTEFARRGARVVLGDVDKP--GLRQAVNHLRAEGFDVHGVMCDVRHR-EEVTHLADEAFRL 80 (275)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHHHHHH
Confidence 4678888889999999999999998666543221 11122334556687776665542233 3344444444333
No 152
>PRK05867 short chain dehydrogenase; Provisional
Probab=65.44 E-value=82 Score=28.07 Aligned_cols=74 Identities=12% Similarity=0.076 Sum_probs=44.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|.-|.++|....+.|.+++++-.... ....-...++..|.++..+..+-.+. +.++++.+...++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 83 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLD--ALEKLADEIGTSGGKVVPVCCDVSQH-QQVTSMLDQVTAE 83 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHHHHHHhcCCeEEEEEccCCCH-HHHHHHHHHHHHH
Confidence 34677888889999999999999998766543221 11222344556677776665432232 3345555444433
No 153
>PRK06114 short chain dehydrogenase; Provisional
Probab=65.30 E-value=1e+02 Score=27.52 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=45.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
..+|+.++|--|.++|....+.|.++++........ ...-.+.++..|.++..+..+-.+ .+.+.++++...++
T Consensus 10 ~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~-~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~ 83 (254)
T PRK06114 10 VAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDG-LAETAEHIEAAGRRAIQIAADVTS-KADLRAAVARTEAE 83 (254)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchH-HHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHH
Confidence 567788888899999999999999888776443210 122234566667777666543223 23345555544443
No 154
>PRK12828 short chain dehydrogenase; Provisional
Probab=64.85 E-value=88 Score=27.12 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=38.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~ 234 (310)
+.++|+.++|.-|.++|....+.|.+++++...... .......+...+.+++..+-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAP--LSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHh--HHHHHHHHhhcCceEEEeec
Confidence 357788888999999999998899997776653321 12233445556777776654
No 155
>PRK05993 short chain dehydrogenase; Provisional
Probab=64.00 E-value=59 Score=29.70 Aligned_cols=64 Identities=11% Similarity=0.075 Sum_probs=42.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (310)
.++|+.++|.-|.++|......|.+++++... ..++..++..|.+++.++-. + .+.+..+.+..
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~------~~~~~~l~~~~~~~~~~Dl~--d-~~~~~~~~~~~ 69 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRK------EEDVAALEAEGLEAFQLDYA--E-PESIAALVAQV 69 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC------HHHHHHHHHCCceEEEccCC--C-HHHHHHHHHHH
Confidence 46788888999999999999999987776433 22344555567776666543 2 23344444444
No 156
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=63.88 E-value=66 Score=30.05 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=34.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCC-eEEEEeCCCchhchHHHHHHHHH-CCCEEEEEc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGL-QCIVYMGAQDMERQALNVFRMRL-LGAEVRAVH 233 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi-~~~Ivmp~~~~~~~~~kv~~~~~-~GA~Vv~v~ 233 (310)
+++++...+|.-|.++...|+.+|. +++++.+. ..+.+.++. +|++-+...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s------~~~~~~~~~~lGa~~vi~~ 208 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGS------DEKCQLLKSELGFDAAINY 208 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCC------HHHHHHHHHhcCCcEEEEC
Confidence 4566666668999999999999998 55554332 235556654 888765443
No 157
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=63.86 E-value=53 Score=31.42 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=34.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHH-HCCCEEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR-LLGAEVRAV 232 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~-~~GA~Vv~v 232 (310)
+.++|.+.+|--|.++...|+.+|.+++++.. +..|.+.++ .+|++.+.-
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~------~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG------SSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEcC------CHHHHHHHHHhcCCCEEEE
Confidence 35666666699999999999999998544322 234666676 689976554
No 158
>PRK05650 short chain dehydrogenase; Provisional
Probab=63.65 E-value=91 Score=28.15 Aligned_cols=56 Identities=18% Similarity=0.090 Sum_probs=38.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
+++|+.++|.-|.++|....+.|.+++++..... +...-...++..|.++..+..+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D 57 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEE--GGEETLKLLREAGGDGFYQRCD 57 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEcc
Confidence 4678888899999999999999999777654322 1122234456667777666554
No 159
>PRK07832 short chain dehydrogenase; Provisional
Probab=63.61 E-value=54 Score=29.72 Aligned_cols=50 Identities=30% Similarity=0.207 Sum_probs=33.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~V 229 (310)
.++|+.++|.-|.++|...++.|.+++++-..... .......++..|+++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~--~~~~~~~~~~~~~~~ 51 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADG--LAQTVADARALGGTV 51 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCCc
Confidence 36778888899999999999999987665433221 122234456667654
No 160
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=63.50 E-value=71 Score=27.60 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=33.8
Q ss_pred CCeEEEecCcch-HH--HHHHHHHHHcCCeEEEEe--CC-CchhchHHHHHHHHHCCCEEEEEc
Q 021613 176 KTRIIAETGAGQ-HG--VATATVCARFGLQCIVYM--GA-QDMERQALNVFRMRLLGAEVRAVH 233 (310)
Q Consensus 176 ~~~~Vv~aSsGN-hg--~AlA~aaa~~Gi~~~Ivm--p~-~~~~~~~~kv~~~~~~GA~Vv~v~ 233 (310)
..++++-+|.|| -| .++|-.-++.|++++|++ |. ...+....+.+.++.+|.+++...
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 88 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELD 88 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSC
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeecc
Confidence 345777788886 33 344444555899999955 32 221224567778888887776543
No 161
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.46 E-value=1e+02 Score=26.96 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=43.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
+.++++.++|.-|.++|....+.|.++++++..... ........++..+.++..+..+-.+. +.+..+++.+.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~ 79 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEE-AAQELLEEIKEEGGDAIAVKADVSSE-EDVENLVEQIVE 79 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHHHHhcCCeEEEEECCCCCH-HHHHHHHHHHHH
Confidence 357788888999999999988899987766333221 11112233444566776665543333 334444444444
No 162
>PRK06138 short chain dehydrogenase; Provisional
Probab=63.45 E-value=96 Score=27.32 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=43.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|--|.++|....+.|.+++++...... .......++ .|.++..+..+-.+. +.++++++...++
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~~-~~~~~~~~~~D~~~~-~~~~~~~~~i~~~ 78 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEA--AERVAAAIA-AGGRAFARQGDVGSA-EAVEALVDFVAAR 78 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHH--HHHHHHHHh-cCCeEEEEEcCCCCH-HHHHHHHHHHHHH
Confidence 357788888999999999988899887666533221 122223333 577776665543233 3345555444433
No 163
>PRK06701 short chain dehydrogenase; Provisional
Probab=63.43 E-value=98 Score=28.66 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=45.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
.++|+.++|.-|.++|....+.|.+++++...... ........++..|.++..+..+-.+ .+.++++++...+
T Consensus 48 ~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~i~~ 120 (290)
T PRK06701 48 VALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHE-DANETKQRVEKEGVKCLLIPGDVSD-EAFCKDAVEETVR 120 (290)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcch-HHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHH
Confidence 57778888899999999999999998776544221 1122334556678787666554222 3334444444333
No 164
>PRK07806 short chain dehydrogenase; Provisional
Probab=63.42 E-value=1.1e+02 Score=27.07 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=43.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (310)
+.++|+.++|.-|.+++......|.+++++...... ....-...++..|.++..+..+-.+.+ .+..+++..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~-~~~~~~~~~ 78 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAP-RANKVVAEIEAAGGRASAVGADLTDEE-SVAALMDTA 78 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchH-hHHHHHHHHHhcCCceEEEEcCCCCHH-HHHHHHHHH
Confidence 357778888999999999999999998776543221 011112334556777766654433333 334444433
No 165
>PRK07677 short chain dehydrogenase; Provisional
Probab=63.35 E-value=80 Score=28.12 Aligned_cols=73 Identities=12% Similarity=0.164 Sum_probs=42.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.++|+.++|.-|.++|....+.|.+++++..... +...-...++..+.+++.+..+-.+ .+.++++.+...++
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 75 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKE--KLEEAKLEIEQFPGQVLTVQMDVRN-PEDVQKMVEQIDEK 75 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHH
Confidence 4677888889999999999999997666543321 1112223344556677666543222 33445555444443
No 166
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=62.58 E-value=99 Score=27.57 Aligned_cols=74 Identities=16% Similarity=0.061 Sum_probs=44.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|.-|.++|......|.+++++...... ...-...++..|.++..+..+-.+. +.+.++.+...+.
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~--~~~~~~~l~~~~~~~~~~~~D~~~~-~~i~~~~~~~~~~ 85 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADA--ANHVVDEIQQLGGQAFACRCDITSE-QELSALADFALSK 85 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHH--HHHHHHHHHhcCCcEEEEEccCCCH-HHHHHHHHHHHHH
Confidence 457788888899999999999999987776543221 1112234455677766655432232 3344444444333
No 167
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=62.51 E-value=46 Score=31.63 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=36.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
.++|. ++|.-|...+..++.+|.+++++.+... .+.|++.++.+||+.+
T Consensus 175 ~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~---~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 175 RALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDP---PDPKADIVEELGATYV 223 (355)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEe
Confidence 45554 6799999999999999998666554321 2457778889999864
No 168
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=62.20 E-value=43 Score=32.51 Aligned_cols=87 Identities=15% Similarity=0.058 Sum_probs=57.6
Q ss_pred eEEEEecCCCC-----CCChHHHHHHHHHHHhhhcCCCeEEEecCcch--HHHHHHHHHHHcCCeEEEEeCCCchhchHH
Q 021613 145 HIYLKREDLNH-----TGAHKINNAVGQALLAKRLGKTRIIAETGAGQ--HGVATATVCARFGLQCIVYMGAQDMERQAL 217 (310)
Q Consensus 145 ~I~lK~E~lnp-----TGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGN--hg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~ 217 (310)
+-++|.++--| |-+.---.|+-++.+-.+..+...|+--+ +| -|+++--.|+.+||+.+=++.+.+- ...
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNg-anS~VG~~ViQlaka~GiktinvVRdR~~--iee 200 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNG-ANSGVGQAVIQLAKALGIKTINVVRDRPN--IEE 200 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecC-cccHHHHHHHHHHHHhCcceEEEeecCcc--HHH
Confidence 35566665433 22222224666777776666666665433 44 6778888999999999999876432 234
Q ss_pred HHHHHHHCCCEEEEEcC
Q 021613 218 NVFRMRLLGAEVRAVHS 234 (310)
Q Consensus 218 kv~~~~~~GA~Vv~v~~ 234 (310)
-.++++.+||+.++.+.
T Consensus 201 l~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 201 LKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHcCCceEecHH
Confidence 45688999999988874
No 169
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=61.93 E-value=1.1e+02 Score=27.25 Aligned_cols=73 Identities=18% Similarity=0.110 Sum_probs=43.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
+.++|+.++|.-|.++|....+.|.+++++...... ...-...++..|.++..+..+-.+. +.+..+++....
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~ 84 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAAT--LEAAVAALRAAGGAAEALAFDIADE-EAVAAAFARIDA 84 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHH--HHHHHHHHHhcCCceEEEEccCCCH-HHHHHHHHHHHH
Confidence 356778888899999999999999987776544221 1122234555676665555432222 223444444333
No 170
>PRK07774 short chain dehydrogenase; Provisional
Probab=61.20 E-value=1.1e+02 Score=27.03 Aligned_cols=73 Identities=21% Similarity=0.100 Sum_probs=42.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.++++.++|--|.++|......|.+++++...... ...-...++..+.++..+..+-.+. +.+..+.+.+.++
T Consensus 8 ~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~ 80 (250)
T PRK07774 8 VAIVTGAAGGIGQAYAEALAREGASVVVADINAEG--AERVAKQIVADGGTAIAVQVDVSDP-DSAKAMADATVSA 80 (250)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCcEEEEEcCCCCH-HHHHHHHHHHHHH
Confidence 47788888999999999999999988776543221 1111223444466665554432222 3344444444444
No 171
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=61.16 E-value=38 Score=31.11 Aligned_cols=48 Identities=25% Similarity=0.266 Sum_probs=33.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
.++| .++|.-|..++..|+.+|.+.++++.. ...|.+..+.+|++.+.
T Consensus 123 ~VlV-~G~G~vG~~~~~~ak~~G~~~Vi~~~~-----~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 123 RVLV-VGAGMLGLTAAAAAAAAGAARVVAADP-----SPDRRELALSFGATALA 170 (280)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCCEEEEECC-----CHHHHHHHHHcCCcEec
Confidence 4444 467899999999999999985555422 23466777888886544
No 172
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=60.77 E-value=1.2e+02 Score=26.62 Aligned_cols=72 Identities=14% Similarity=0.047 Sum_probs=44.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~ 251 (310)
.++|+.++|.-|.+++......|.+++++...... ........++.+|.++..+..+-.+. +.+..+++...
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~d~-~~i~~~~~~~~ 74 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLH-AAQEVVNLITQAGGKAFVLQADISDE-NQVVAMFTAID 74 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChH-HHHHHHHHHHhCCCeEEEEEccCCCH-HHHHHHHHHHH
Confidence 46778888999999999999999987765543321 12223344566777776665432232 33455555443
No 173
>PRK08303 short chain dehydrogenase; Provisional
Probab=60.65 E-value=1.2e+02 Score=28.49 Aligned_cols=76 Identities=11% Similarity=-0.025 Sum_probs=45.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCc--------hhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQD--------MERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~--------~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~ 248 (310)
+.++|+.+++--|.++|....+.|.+++++-.... .++.....+.++..|.+++.+..+-.+.+ .++.+.+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~-~v~~~~~ 87 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPE-QVRALVE 87 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHH-HHHHHHH
Confidence 35677777788999999999999998777654311 11112233456667877766654433333 3455455
Q ss_pred HHHHc
Q 021613 249 DWVTN 253 (310)
Q Consensus 249 ~~~~~ 253 (310)
...++
T Consensus 88 ~~~~~ 92 (305)
T PRK08303 88 RIDRE 92 (305)
T ss_pred HHHHH
Confidence 44443
No 174
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=60.52 E-value=81 Score=27.18 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=46.9
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCC-c-hhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ-D-MERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~-~-~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.|++.+.|..|..+|..-...|-.-+|++... . .......++.++..|++|..+..+-.+. +.+.++++...++
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~-~~v~~~~~~~~~~ 78 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDP-EAVAAALAQLRQR 78 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSH-HHHHHHHHTSHTT
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCH-HHHHHHHHHHHhc
Confidence 46778889999999998888876666666554 1 1123457888999999999887653333 3355555544444
No 175
>PRK09135 pteridine reductase; Provisional
Probab=60.31 E-value=1.2e+02 Score=26.59 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=27.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
+.++|+.++|.-|..++..-.+.|.+++++...
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 357788888999999999999999998888754
No 176
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=60.14 E-value=67 Score=30.08 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=33.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.++|. ++|.-|.+++..|+.+|.+.+++.+. ..+.+.++.+|++-+.
T Consensus 165 ~~vlV~-g~g~iG~~~~~~a~~~G~~vi~~~~~------~~~~~~~~~~g~~~~i 212 (333)
T cd08296 165 DLVAVQ-GIGGLGHLAVQYAAKMGFRTVAISRG------SDKADLARKLGAHHYI 212 (333)
T ss_pred CEEEEE-CCcHHHHHHHHHHHHCCCeEEEEeCC------hHHHHHHHHcCCcEEe
Confidence 345554 48999999999999999985554332 2355666778885443
No 177
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=60.09 E-value=44 Score=29.72 Aligned_cols=48 Identities=29% Similarity=0.407 Sum_probs=32.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~ 234 (310)
|.|.-.|||-.|.++|-++.+.|-+++++...... +. -.|.+++.+..
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~--~~-------p~~~~~i~v~s 68 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSL--PP-------PPGVKVIRVES 68 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-------------TTEEEEE-SS
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccc--cc-------cccceEEEecc
Confidence 55667799999999999999999999999876432 11 24777888764
No 178
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=59.90 E-value=39 Score=31.99 Aligned_cols=47 Identities=26% Similarity=0.129 Sum_probs=33.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+++| .++|--|.+++..|+.+|.+++++.+. +.|.+.++.+||+.+.
T Consensus 168 ~VlV-~G~g~iG~~a~~~a~~~G~~vi~~~~~------~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 168 RLGL-YGFGGSAHLTAQVALAQGATVHVMTRG------AAARRLALALGAASAG 214 (329)
T ss_pred EEEE-EcCCHHHHHHHHHHHHCCCeEEEEeCC------hHHHHHHHHhCCceec
Confidence 4444 456888988889999999974444322 3467889999997654
No 179
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.62 E-value=1.2e+02 Score=26.62 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=41.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (310)
+.++|+.++|.-|.++|......|.+++++...... .......++. |.++..+..+-.+. +.++.+++..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~-~~~~~~~~~D~~~~-~~~~~~~~~~ 75 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEA--AERVAAEILA-GGRAIAVAADVSDE-ADVEAAVAAA 75 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHhc-CCeEEEEECCCCCH-HHHHHHHHHH
Confidence 357788888999999999999999997666544321 1111222332 56666665443233 2344444444
No 180
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=59.59 E-value=77 Score=29.86 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=35.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.+++ .++|..|.+++..|+.+|.+.++++... +.+.+.++.+|++.+.
T Consensus 176 ~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~v~ 224 (350)
T cd08256 176 DVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDLK-----DERLALARKFGADVVL 224 (350)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcCC-----HHHHHHHHHcCCcEEe
Confidence 34555 7779999999999999998876665443 3455677788886554
No 181
>PRK09242 tropinone reductase; Provisional
Probab=59.52 E-value=1.2e+02 Score=27.08 Aligned_cols=74 Identities=11% Similarity=0.037 Sum_probs=44.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHC--CCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLL--GAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~--GA~Vv~v~~~~~~~~da~~~a~~~~~~~~ 254 (310)
.++++.++|.-|.++|......|.+++++..... ........++.. +.++..+..+-.+. +.+..+++...+++
T Consensus 11 ~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~~ 86 (257)
T PRK09242 11 TALITGASKGIGLAIAREFLGLGADVLIVARDAD--ALAQARDELAEEFPEREVHGLAADVSDD-EDRRAILDWVEDHW 86 (257)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhhCCCCeEEEEECCCCCH-HHHHHHHHHHHHHc
Confidence 4677788889999999999999998776654322 111122233333 66777776543232 33455555544443
No 182
>PRK07791 short chain dehydrogenase; Provisional
Probab=59.47 E-value=1.4e+02 Score=27.60 Aligned_cols=76 Identities=18% Similarity=0.095 Sum_probs=45.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCC-------chhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQ-------DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~-------~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (310)
..+|+.+++.-|.++|....+.|.+++++.... ..+......+.++..|.++..+..+-.+.+ .+.++++..
T Consensus 8 ~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~-~v~~~~~~~ 86 (286)
T PRK07791 8 VVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWD-GAANLVDAA 86 (286)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHH-HHHHHHHHH
Confidence 467788888999999999999999877764321 001112223445566877766654433333 345555554
Q ss_pred HHcc
Q 021613 251 VTNV 254 (310)
Q Consensus 251 ~~~~ 254 (310)
.+++
T Consensus 87 ~~~~ 90 (286)
T PRK07791 87 VETF 90 (286)
T ss_pred HHhc
Confidence 4443
No 183
>PRK07814 short chain dehydrogenase; Provisional
Probab=59.34 E-value=1e+02 Score=27.66 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=43.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|--|.++|-.....|.+++++..... ....-...++..|.++..+..+-.+ .+.+.++++...++
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 84 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTES--QLDEVAEQIRAAGRRAHVVAADLAH-PEATAGLAGQAVEA 84 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 35678888889999999999999998777654321 1112223344456666555443222 33345555544443
No 184
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=59.27 E-value=82 Score=30.87 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=34.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+.++| .++|--|.+++..|+.+|.+.+++. +. ...+++..+.+||+.+
T Consensus 187 ~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~-d~----~~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 187 STVYI-AGAGPVGLAAAASAQLLGAAVVIVG-DL----NPARLAQARSFGCETV 234 (393)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCceEEEe-CC----CHHHHHHHHHcCCeEE
Confidence 34555 6789999999999999999876643 22 2346777888898753
No 185
>PRK05717 oxidoreductase; Validated
Probab=59.02 E-value=1.3e+02 Score=26.84 Aligned_cols=71 Identities=11% Similarity=0.066 Sum_probs=43.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~ 254 (310)
.++|+.++|.-|.++|....+.|.+++++-.... ......+..+.+++.+..+-.+. +.+.++++...+++
T Consensus 12 ~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~~ 82 (255)
T PRK05717 12 VALVTGAARGIGLGIAAWLIAEGWQVVLADLDRE-----RGSKVAKALGENAWFIAMDVADE-AQVAAGVAEVLGQF 82 (255)
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHH-----HHHHHHHHcCCceEEEEccCCCH-HHHHHHHHHHHHHh
Confidence 5778888899999999999999988776633211 11123344566666655442232 33445555544443
No 186
>PRK09134 short chain dehydrogenase; Provisional
Probab=58.97 E-value=1.3e+02 Score=26.77 Aligned_cols=73 Identities=16% Similarity=0.106 Sum_probs=43.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
.++|+.++|.-|.++|....+.|.+++++...... ....-...++..|.++..+..+-.+. +++.++++....
T Consensus 11 ~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~~~ 83 (258)
T PRK09134 11 AALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRD-EAEALAAEIRALGRRAVALQADLADE-AEVRALVARASA 83 (258)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHHHHhcCCeEEEEEcCCCCH-HHHHHHHHHHHH
Confidence 57788888999999999999999988776543221 01111233445588877665442233 334444444433
No 187
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=58.83 E-value=1.3e+02 Score=26.42 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=43.6
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+|+.++|.-|.++|....+.|.+++++...... ....-.+.++..|.++..+..+-.+.+ .+..+++...+.
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~Dl~~~~-~~~~~~~~~~~~ 73 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRS-DAESVVSAIQAQGGNARLLQFDVADRV-ACRTLLEADIAE 73 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHHHHHcCCeEEEEEccCCCHH-HHHHHHHHHHHH
Confidence 567788889999999999999997766543221 112223445566777776665433333 344444444333
No 188
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=58.62 E-value=64 Score=30.95 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=33.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.++| .++|--|.+++..|+.+|.+-++++.. .+.|++..+.+||+.+.
T Consensus 193 ~~VlV-~G~G~vG~~a~~lak~~G~~~Vi~~~~-----~~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 193 QSVAV-VGLGGVGLSALLGAVAAGASQVVAVDL-----NEDKLALARELGATATV 241 (371)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCcEEEEcC-----CHHHHHHHHHcCCceEe
Confidence 34555 467899999999999999954444322 23466677888986544
No 189
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=58.50 E-value=1e+02 Score=31.96 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=37.7
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcC
Q 021613 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~ 234 (310)
++.-+.|..|.+.+..++.+|-.++++-.. ..++++.+.+|++.+.++.
T Consensus 167 VlViGaG~iGl~Aa~~ak~lGA~V~v~d~~------~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 167 VLVIGAGVAGLAAIGAANSLGAIVRAFDTR------PEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeCC------HHHHHHHHHcCCeEEeccc
Confidence 344689999999999999999875554222 3467788899999987764
No 190
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=58.41 E-value=1.3e+02 Score=26.45 Aligned_cols=70 Identities=16% Similarity=0.055 Sum_probs=42.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (310)
.++|+.++|-.|.+++....+.|.+++++...... ...-...++..+.++..+..+-.+. +.+..+++..
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~ 72 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAG--AEAAAKVATDAGGSVIYLVADVTKE-DEIADMIAAA 72 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhcCCceEEEECCCCCH-HHHHHHHHHH
Confidence 46778888999999999998999987777554321 1111223345577776665443232 2344444443
No 191
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=58.20 E-value=1.1e+02 Score=27.47 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=40.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+++|+.+++.-|.++|....+.|.++++.-.... ....-.+.++..| ++..+..+-.+. +.+.++++...++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~--~~~~~~~~l~~~~-~~~~~~~Dv~d~-~~~~~~~~~~~~~ 73 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEE--NLEKALKELKEYG-EVYAVKADLSDK-DDLKNLVKEAWEL 73 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcC-CceEEEcCCCCH-HHHHHHHHHHHHh
Confidence 3677888889999999999999998766543321 1112223444444 454444332222 3345555544443
No 192
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=58.20 E-value=43 Score=29.54 Aligned_cols=62 Identities=21% Similarity=0.093 Sum_probs=43.0
Q ss_pred HHhhhcCCCeEEEecCcchHHH-HHHHHHHHcCCeEEEEeCCCch---hchHHHHHHHHHCCCEEE
Q 021613 169 LLAKRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGAQDM---ERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhg~-AlA~aaa~~Gi~~~Ivmp~~~~---~~~~~kv~~~~~~GA~Vv 230 (310)
..+.+.|.+.+|++.-..|+++ +.|..+...|++++|+...... +....-++.|+..|++|+
T Consensus 131 ~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 131 EYLRERGIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 3344678888888877777776 5667777799999888755322 223455777888888774
No 193
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=58.18 E-value=73 Score=30.50 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=33.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.++|. ++|.-|.+++..|+.+|.+-++.+... ..|++.++.+|++.++
T Consensus 188 ~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~~~-----~~~~~~~~~lGa~~~i 236 (368)
T cd08300 188 STVAVF-GLGAVGLAVIQGAKAAGASRIIGIDIN-----PDKFELAKKFGATDCV 236 (368)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCCEEE
Confidence 345554 679999999999999999534444222 3456677888987544
No 194
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=58.11 E-value=74 Score=29.56 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=32.3
Q ss_pred CeEEEecCcch---HHHHHHHHHHHcCCeEEEEeCCCchhch-HHHHHHHHHCCCEE
Q 021613 177 TRIIAETGAGQ---HGVATATVCARFGLQCIVYMGAQDMERQ-ALNVFRMRLLGAEV 229 (310)
Q Consensus 177 ~~~Vv~aSsGN---hg~AlA~aaa~~Gi~~~Ivmp~~~~~~~-~~kv~~~~~~GA~V 229 (310)
.++++.++.|| =|.++|-.-+..|+++.||++....... ..+.++++.+|..+
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 117 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQSSKPHYENLVTQCEDLGIPF 117 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCCCChHHHHHHHHHHHHcCCCE
Confidence 35677788885 3445555555689999999965321111 33445666677553
No 195
>PRK08251 short chain dehydrogenase; Provisional
Probab=58.10 E-value=1.3e+02 Score=26.44 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=42.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHC--CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLL--GAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~--GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.++++.++|.-|.++|....+.|.++++....... ...-...++.. |.++..+..+-.+. +.+..+++...++
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 78 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARRTDR--LEELKAELLARYPGIKVAVAALDVNDH-DQVFEVFAEFRDE 78 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH--HHHHHHHHHhhCCCceEEEEEcCCCCH-HHHHHHHHHHHHH
Confidence 46788888999999999999999876665443221 11111222222 66777665543333 3345555544443
No 196
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=57.89 E-value=88 Score=28.09 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=42.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHH-HCCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR-LLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~-~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~ 254 (310)
+.++|+.++|.-|.++|....+.|.+++++-... .+++.+. .+|.++..+..+-.+ .+.+.++++...+++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~------~~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~ 77 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA------AGLQELEAAHGDAVVGVEGDVRS-LDDHKEAVARCVAAF 77 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHhhcCCceEEEEeccCC-HHHHHHHHHHHHHHh
Confidence 3567788888999999999999999877653221 2233333 346566555443222 233455555544443
No 197
>PRK07576 short chain dehydrogenase; Provisional
Probab=57.56 E-value=1.3e+02 Score=27.24 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=44.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|.-|.++|......|.+++++...... .......+...+.+++.+..+-.+ .+.+..+++...++
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~~ 83 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEK--VDAAVAQLQQAGPEGLGVSADVRD-YAAVEAAFAQIADE 83 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHH
Confidence 457788888899999999999999987776543221 112223455567776655543223 23345555554433
No 198
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=57.18 E-value=51 Score=31.49 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=33.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.++| .++|.-|.+++..|+.+|.+.++++... ..+.+.++.+|++.+.
T Consensus 189 ~~VlV-~G~g~vG~~a~q~ak~~G~~~vi~~~~~-----~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 189 STVAI-FGLGAVGLAVAEGARIRGASRIIGVDLN-----PSKFEQAKKFGVTEFV 237 (369)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCceEE
Confidence 34454 4679999999999999998434443222 3466777889986544
No 199
>PRK08017 oxidoreductase; Provisional
Probab=56.85 E-value=1e+02 Score=27.22 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=36.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~ 234 (310)
.++|+.++|.-|.++|....+.|.+++++... ..+++.++..|++.+..+-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~------~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK------PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC------HHHhHHHHhCCCeEEEeec
Confidence 46778888999999999999999987665432 2344455667877766654
No 200
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.41 E-value=1.5e+02 Score=27.61 Aligned_cols=70 Identities=21% Similarity=0.150 Sum_probs=44.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (310)
.+||+.++|.-|.++|....+.|.++++.-.... .......+.++..|.+++.+..+-.+. +.+..+++.
T Consensus 14 ~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~-~~~~~~~~~i~~~g~~~~~~~~Dv~d~-~~~~~~~~~ 83 (306)
T PRK07792 14 VAVVTGAAAGLGRAEALGLARLGATVVVNDVASA-LDASDVLDEIRAAGAKAVAVAGDISQR-ATADELVAT 83 (306)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEecCCch-hHHHHHHHHHHhcCCeEEEEeCCCCCH-HHHHHHHHH
Confidence 4677888889999999999999998766533221 112233455677888887776543333 334444443
No 201
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=56.31 E-value=93 Score=29.00 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=33.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.+++...++..|.+++..|+.+|++++++.... .+.+.++.+|++-+.
T Consensus 167 ~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~v~ 215 (341)
T cd08297 167 DWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGD------EKLELAKELGADAFV 215 (341)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH------HHHHHHHHcCCcEEE
Confidence 4566666666799999999999999866654332 244455667775443
No 202
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=56.29 E-value=54 Score=31.50 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=37.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v 232 (310)
+.+++.+++|.-|..+-..|+.+|...++.. .. ..|.+.++.+||+.+..
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~-~s-----~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGATVVAVV-SS-----SEKLELLKELGADHVIN 193 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCCcEEEEe-cC-----HHHHHHHHhcCCCEEEc
Confidence 4577888899999999999999998434433 22 34566889999977665
No 203
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=56.05 E-value=1.2e+02 Score=26.23 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=42.2
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHH
Q 021613 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (310)
+++.++|..|..+|....+.|.+++++..... .........++..|+++..+..+-.+ .+++++++...
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~ 70 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSE-EGAEEVVEELKAYGVKALGVVCDVSD-REDVKAVVEEI 70 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCch-hHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHH
Confidence 56788889999999999989998766654321 11122334456678877666554222 23344544443
No 204
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=55.53 E-value=59 Score=30.78 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=35.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v 232 (310)
+.++| .++|.-|.++...++.+|.+.++++.. .+.|++..+.+||+.+.-
T Consensus 171 ~~VlV-~G~G~vG~~aiqlak~~G~~~Vi~~~~-----~~~~~~~a~~lGa~~vi~ 220 (343)
T PRK09880 171 KRVFV-SGVGPIGCLIVAAVKTLGAAEIVCADV-----SPRSLSLAREMGADKLVN 220 (343)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEeC-----CHHHHHHHHHcCCcEEec
Confidence 34555 467999999999999999965544432 235677888899976543
No 205
>PRK07775 short chain dehydrogenase; Provisional
Probab=55.52 E-value=1.6e+02 Score=26.69 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=43.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~ 250 (310)
+.++|+.++|.-|.++|......|.+++++..... +...-...++..|.++..+..+-.+. +.+..+++..
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~ 81 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVE--KCEELVDKIRADGGEAVAFPLDVTDP-DSVKSFVAQA 81 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEECCCCCH-HHHHHHHHHH
Confidence 45778888889999999999999998766654322 11112234556688877666543333 3344444433
No 206
>PRK06198 short chain dehydrogenase; Provisional
Probab=55.48 E-value=1.3e+02 Score=26.71 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=43.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
+.++++.++|.-|..+|......|.+.++++..... ........++..|.++..+..+-.+. +.+.++++...+
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~-~~~~~~~~l~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~ 80 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAE-KGEAQAAELEALGAKAVFVQADLSDV-EDCRRVVAAADE 80 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHH-HHHHHHHHHHhcCCeEEEEEccCCCH-HHHHHHHHHHHH
Confidence 346778888899999999999999984444433321 11222335566788886665442233 334554544433
No 207
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=55.45 E-value=45 Score=31.26 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=32.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.++|. ++|--|.+++..|+.+|.+-++++... ..+.+.++.+|++.+.
T Consensus 165 ~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~~~-----~~~~~~~~~~ga~~~i 213 (339)
T cd08239 165 DTVLVV-GAGPVGLGALMLARALGAEDVIGVDPS-----PERLELAKALGADFVI 213 (339)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEE
Confidence 345554 678999999999999999833333222 3355667778886544
No 208
>PRK06483 dihydromonapterin reductase; Provisional
Probab=54.90 E-value=1.5e+02 Score=26.02 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=42.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
.++|+.++|--|.++|....+.|.+++++-.... ...+.++..|++.+.++-. + .+.+....+...+
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~~D~~--~-~~~~~~~~~~~~~ 70 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY-----PAIDGLRQAGAQCIQADFS--T-NAGIMAFIDELKQ 70 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch-----hHHHHHHHcCCEEEEcCCC--C-HHHHHHHHHHHHh
Confidence 4677888889999999999999998877654322 1234455667776666542 2 2334444444433
No 209
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.62 E-value=1.6e+02 Score=26.25 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=42.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|--|.++|......|.+++++..... .+.+.++..+...+.++-. + .+.+.++++...++
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~-----~~~~~l~~~~~~~~~~Dl~--~-~~~~~~~~~~~~~~ 76 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAE-----NEAKELREKGVFTIKCDVG--N-RDQVKKSKEVVEKE 76 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcH-----HHHHHHHhCCCeEEEecCC--C-HHHHHHHHHHHHHH
Confidence 34677888889999999999999998776543322 2334444446555555543 2 23345555544443
No 210
>PRK07063 short chain dehydrogenase; Provisional
Probab=54.50 E-value=1.6e+02 Score=26.26 Aligned_cols=74 Identities=18% Similarity=0.088 Sum_probs=42.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHH--CCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL--LGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~--~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|--|.++|......|.+++++...... ...-...++. .+.++..+..+-.+. +.+.++++...++
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~~ 83 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAAL--AERAAAAIARDVAGARVLAVPADVTDA-ASVAAAVAAAEEA 83 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHhccCCceEEEEEccCCCH-HHHHHHHHHHHHH
Confidence 356778888889999999999999987766543221 1122233443 466665555432232 3344445544443
No 211
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=54.46 E-value=1.5e+02 Score=26.79 Aligned_cols=75 Identities=8% Similarity=-0.094 Sum_probs=40.5
Q ss_pred eEEEecCc--chHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGA--GQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSs--GNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
..+|+.++ +--|.++|....+.|.++++..-.....+....++.++..+.+++.+..+-.+. +.++++.+...++
T Consensus 8 ~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~v~~~~~~~~~~ 84 (258)
T PRK07370 8 KALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDD-AQIEETFETIKQK 84 (258)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCH-HHHHHHHHHHHHH
Confidence 45666654 468999999999999997765422111112344555555554444444332233 3345555444443
No 212
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=54.21 E-value=92 Score=29.91 Aligned_cols=49 Identities=14% Similarity=0.092 Sum_probs=33.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.++|. ++|.-|.+++..|+.+|.+-++.+.. ...+.+.++.+||+.+.
T Consensus 187 ~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~~~-----~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 187 DTVAVF-GLGGIGLSVIQGARMAKASRIIAIDI-----NPAKFELAKKLGATDCV 235 (368)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC-----CHHHHHHHHHhCCCeEE
Confidence 345554 67999999999999999943443322 23466677888986544
No 213
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=54.04 E-value=56 Score=27.51 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=28.4
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
++|..++|+.|..++-...+.|.++++++....
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 456778899999999999999999999997643
No 214
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=53.93 E-value=1.1e+02 Score=28.10 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=24.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.+++...+|.-|++++..|+.+|.+.+++..
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~ 172 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARGINVINLVR 172 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCCCeEEEEec
Confidence 34555556689999999999999998766643
No 215
>PRK07326 short chain dehydrogenase; Provisional
Probab=53.89 E-value=1.5e+02 Score=25.82 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=26.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.++++.++|.-|.++|......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 35777888899999999999999999776653
No 216
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=53.81 E-value=74 Score=28.90 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=33.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~V 229 (310)
+.+++...+|..|.+++..|+.+|.+.+..... ..+.+.++.+|+..
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~ 180 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAGAHVVAVVGS------PARAEGLRELGAAE 180 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCcE
Confidence 456666666899999999999999985554322 23556677788753
No 217
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=53.78 E-value=1.2e+02 Score=28.32 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=32.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~V 229 (310)
+.+++. ++|.-|.+++..|+.+|+..++++... ..+...++.+|+.+
T Consensus 169 ~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~~~~-----~~~~~~~~~~g~~~ 215 (344)
T cd08284 169 DTVAVI-GCGPVGLCAVLSAQVLGAARVFAVDPV-----PERLERAAALGAEP 215 (344)
T ss_pred CEEEEE-CCcHHHHHHHHHHHHcCCceEEEEcCC-----HHHHHHHHHhCCeE
Confidence 455655 678999999999999998434444222 23455667788764
No 218
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=53.57 E-value=1.5e+02 Score=25.76 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=42.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
..+|+.++|.-|..+|......|.+++++...... ........+...+.++..+..+-.+ .+.+..+++...+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 74 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEE-RAEAWLQEQGALGFDFRVVEGDVSS-FESCKAAVAKVEA 74 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHH-HHHHHHHHHHhhCCceEEEEecCCC-HHHHHHHHHHHHH
Confidence 35678888999999999999999987776542211 1111122344456666666544222 2334455554443
No 219
>PRK06123 short chain dehydrogenase; Provisional
Probab=53.55 E-value=1.6e+02 Score=25.91 Aligned_cols=74 Identities=19% Similarity=0.131 Sum_probs=42.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.++|+.++|.-|.++|..-.+.|..+++...... +........++..|.+++.+..+-.+ .+.+.++++...++
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 77 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLRNR-DAAEAVVQAIRRQGGEALAVAADVAD-EADVLRLFEAVDRE 77 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCCCH-HHHHHHHHHHHhCCCcEEEEEeccCC-HHHHHHHHHHHHHH
Confidence 4677888889999999988888977554432221 11222234456667776665543222 33445555544443
No 220
>PRK08227 autoinducer 2 aldolase; Validated
Probab=53.08 E-value=91 Score=29.44 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=45.1
Q ss_pred HHHHHHHhhhcCCCeEEEecCcch--------HHHHHHHHHHHcCCeEEEEeCCCch-hchHHH----HHHHHHCCCEEE
Q 021613 164 AVGQALLAKRLGKTRIIAETGAGQ--------HGVATATVCARFGLQCIVYMGAQDM-ERQALN----VFRMRLLGAEVR 230 (310)
Q Consensus 164 a~~~l~~a~~~g~~~~Vv~aSsGN--------hg~AlA~aaa~~Gi~~~Ivmp~~~~-~~~~~k----v~~~~~~GA~Vv 230 (310)
....+..|.+.|.+.+.+..-=|+ ....++..|.++|++..+++|.... .+.... .+.---+||+|+
T Consensus 96 l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiV 175 (264)
T PRK08227 96 VAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQII 175 (264)
T ss_pred ceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEE
Confidence 444567788899876544332231 3445677899999999998887521 111111 222346899999
Q ss_pred EEcCC
Q 021613 231 AVHSG 235 (310)
Q Consensus 231 ~v~~~ 235 (310)
.+...
T Consensus 176 K~~y~ 180 (264)
T PRK08227 176 KTYYV 180 (264)
T ss_pred ecCCC
Confidence 99864
No 221
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=52.95 E-value=48 Score=32.06 Aligned_cols=56 Identities=7% Similarity=0.033 Sum_probs=38.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHH----HHHHCCCEEEEEcC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVF----RMRLLGAEVRAVHS 234 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~----~~~~~GA~Vv~v~~ 234 (310)
+++...-+.|-+.++-.+|+++|+.++|..|++.... +.-++ ..+..|++|...+.
T Consensus 155 k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~-~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 155 KLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPD-PEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred EEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcC-HHHHHHHHHHHHhcCCeEEEecC
Confidence 3444444448999999999999999999999974321 11112 22445888888764
No 222
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=52.93 E-value=1.1e+02 Score=27.94 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=30.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
.+++. ++|..|.+++..|+..|.+.++..+.. .+.+.++.+|++.+
T Consensus 163 ~vli~-g~g~~g~~~~~~a~~~G~~v~~~~~~~------~~~~~~~~~g~~~~ 208 (336)
T cd08276 163 TVLVQ-GTGGVSLFALQFAKAAGARVIATSSSD------EKLERAKALGADHV 208 (336)
T ss_pred EEEEE-CCcHHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHHcCCCEE
Confidence 44444 678899999999999999965554322 23444555676543
No 223
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=52.88 E-value=1.1e+02 Score=29.19 Aligned_cols=49 Identities=20% Similarity=0.178 Sum_probs=33.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.++|. ++|--|.+++..|+.+|.+.++.+... ..+.+.++.+|++.++
T Consensus 178 ~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~~~-----~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 178 DSVAVI-GCGGVGDAAIAGAALAGASKIIAVDID-----DRKLEWAREFGATHTV 226 (358)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCceEE
Confidence 345554 678899999999999999744444222 3456677788886443
No 224
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=52.87 E-value=1.1e+02 Score=28.75 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=32.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+.+++- ++|..|.+++..|+.+|.+.++++... ..|...++.+|++.+
T Consensus 177 ~~vlI~-g~g~vg~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~ 224 (350)
T cd08240 177 EPVVII-GAGGLGLMALALLKALGPANIIVVDID-----EAKLEAAKAAGADVV 224 (350)
T ss_pred CEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHhCCcEE
Confidence 345554 679999999999999999655544322 235556677787543
No 225
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=52.82 E-value=1.1e+02 Score=28.68 Aligned_cols=49 Identities=20% Similarity=0.139 Sum_probs=33.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v 232 (310)
++++. ++|..|.+++..|+.+|.+.+++.... ..|.+.++.+|++.+..
T Consensus 175 ~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~~~~-----~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 175 TALVL-GAGPIGLLTILALKAAGASKIIVSEPS-----EARRELAEELGATIVLD 223 (351)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEEC
Confidence 45554 568999999999999999544444322 33556667788876543
No 226
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=52.80 E-value=68 Score=30.79 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=32.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
.++| .++|.-|.+++..|+.+|.+.+++..... .+.+..+.+||+.+.
T Consensus 186 ~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~-----~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 186 HLGV-AGLGGLGHVAVKIGKAFGLKVTVISSSSN-----KEDEAINRLGADSFL 233 (360)
T ss_pred EEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCCcc-----hhhhHHHhCCCcEEE
Confidence 4555 67899999999999999998655443322 223445678886444
No 227
>PLN02253 xanthoxin dehydrogenase
Probab=52.73 E-value=1.4e+02 Score=26.95 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=26.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.++|+.++|.-|.++|....+.|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 35788888999999999999999998777643
No 228
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.61 E-value=57 Score=32.04 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=35.4
Q ss_pred cCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 183 TGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 183 aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
.+.|-.|.---.+|+.+|++++++-... ..|.+.++.+||+...+...
T Consensus 188 ~GlGGLGh~aVq~AKAMG~rV~vis~~~-----~kkeea~~~LGAd~fv~~~~ 235 (360)
T KOG0023|consen 188 VGLGGLGHMAVQYAKAMGMRVTVISTSS-----KKKEEAIKSLGADVFVDSTE 235 (360)
T ss_pred ecCcccchHHHHHHHHhCcEEEEEeCCc-----hhHHHHHHhcCcceeEEecC
Confidence 3444466666678888999999985443 24678899999999888763
No 229
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=52.17 E-value=1.2e+02 Score=28.37 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=35.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.+++ .++|..|.+++..|+.+|++.++.+.... .+.+.++.+|++-+.
T Consensus 170 ~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~~-----~~~~~~~~~ga~~v~ 218 (345)
T cd08287 170 STVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRHE-----DRQALAREFGATDIV 218 (345)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCCH-----HHHHHHHHcCCceEe
Confidence 34555 56899999999999999998666654432 355677788885444
No 230
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=52.17 E-value=2.1e+02 Score=27.03 Aligned_cols=58 Identities=21% Similarity=0.172 Sum_probs=40.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
+..||+..|+.-|.++|...++.|.+.+++-...+.- .....+.-+.+|-+|..++.+
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL-~~la~~l~~~~~v~v~vi~~D 64 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKL-EALAKELEDKTGVEVEVIPAD 64 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHH-HHHHHHHHHhhCceEEEEECc
Confidence 4578888889999999999999999999998765421 112222233467777666654
No 231
>PRK08278 short chain dehydrogenase; Provisional
Probab=51.96 E-value=1.7e+02 Score=26.63 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=44.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhc-h----HHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMER-Q----ALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~-~----~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
.++|+.++|--|.++|....+.|.+++++........ . ..-.+.++..|.+++.+..+-.+ .+.+..+++...+
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~ 86 (273)
T PRK08278 8 TLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRD-EDQVAAAVAKAVE 86 (273)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHH
Confidence 5677888889999999999999999888765432100 0 11123456678887766544222 2334444444333
No 232
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.87 E-value=1.8e+02 Score=26.06 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=44.9
Q ss_pred eEEEecCc--chHHHHHHHHHHHcCCeEEEEeCC----C-----chhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHH
Q 021613 178 RIIAETGA--GQHGVATATVCARFGLQCIVYMGA----Q-----DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEA 246 (310)
Q Consensus 178 ~~Vv~aSs--GNhg~AlA~aaa~~Gi~~~Ivmp~----~-----~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a 246 (310)
.++|+.++ +.-|.++|......|.++++.... . .........+.++..|.++..+..+-.+ .+.+..+
T Consensus 8 ~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~-~~~i~~~ 86 (256)
T PRK12859 8 VAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQ-NDAPKEL 86 (256)
T ss_pred EEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHH
Confidence 45666665 379999999999999987765211 0 0110112234566779888777654323 3445555
Q ss_pred HHHHHHccC
Q 021613 247 IRDWVTNVE 255 (310)
Q Consensus 247 ~~~~~~~~~ 255 (310)
+..+.++..
T Consensus 87 ~~~~~~~~g 95 (256)
T PRK12859 87 LNKVTEQLG 95 (256)
T ss_pred HHHHHHHcC
Confidence 655554433
No 233
>PRK07201 short chain dehydrogenase; Provisional
Probab=51.76 E-value=1.3e+02 Score=31.19 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=46.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVE 255 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~ 255 (310)
.++|+.++|.-|.++|..-.+.|.+++++...... .....+.++..|.++..+..+-.+. +.+.++++...+++.
T Consensus 373 ~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~Dv~~~-~~~~~~~~~~~~~~g 447 (657)
T PRK07201 373 VVLITGASSGIGRATAIKVAEAGATVFLVARNGEA--LDELVAEIRAKGGTAHAYTCDLTDS-AAVDHTVKDILAEHG 447 (657)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHHHhcCCcEEEEEecCCCH-HHHHHHHHHHHHhcC
Confidence 47788888899999999999999987776544221 1222334555677776665443233 334555555544433
No 234
>PRK06500 short chain dehydrogenase; Provisional
Probab=51.66 E-value=1.6e+02 Score=25.72 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=35.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHH-HHHHHCCCEEEEEcCC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNV-FRMRLLGAEVRAVHSG 235 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv-~~~~~~GA~Vv~v~~~ 235 (310)
+.++|+.++|..|.++|......|.+++++.... .++ ...+.+|.++..+..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~------~~~~~~~~~~~~~~~~~~~D 60 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDP------ASLEAARAELGESALVIRAD 60 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH------HHHHHHHHHhCCceEEEEec
Confidence 3577888889999999999999999876653321 111 2233457777665543
No 235
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=51.55 E-value=1.7e+02 Score=25.58 Aligned_cols=73 Identities=12% Similarity=0.030 Sum_probs=42.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
.++|+.++|.-|.++|..-.+.|.++++...... +............+.++..+..+-.+ .+.+.++++...+
T Consensus 4 ~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~ 76 (245)
T PRK12824 4 IALVTGAKRGIGSAIARELLNDGYRVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTD-TEECAEALAEIEE 76 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCC-HHHHHHHHHHHHH
Confidence 5677888889999999999889988777765432 10111112222345666666544222 2334555554433
No 236
>PTZ00323 NAD+ synthase; Provisional
Probab=51.49 E-value=2.2e+02 Score=27.30 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=40.4
Q ss_pred hhcCCCeEEEecCcc-hHHHHHHHHHHHcCC-------eEEEEeCCCch-hchHHHHHHHHHCCCEEEEEcCC
Q 021613 172 KRLGKTRIIAETGAG-QHGVATATVCARFGL-------QCIVYMGAQDM-ERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 172 ~~~g~~~~Vv~aSsG-Nhg~AlA~aaa~~Gi-------~~~Ivmp~~~~-~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
.+.|.+..|+.-|+| .....++.+.+.+|. -..+++|.... .....-...++.+|.+.+.++..
T Consensus 42 ~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~~idi~ 114 (294)
T PTZ00323 42 RRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACGATEVTVDQT 114 (294)
T ss_pred HHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEECc
Confidence 345677788889999 566666666666664 34456784321 11222334577899999888764
No 237
>PRK08265 short chain dehydrogenase; Provisional
Probab=51.39 E-value=1.6e+02 Score=26.43 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=42.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|--|.++|....+.|.+++++-.... .. .+..+.+|.++..+..+-.+ .+.+.++++...++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~---~~--~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 77 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD---NG--AAVAASLGERARFIATDITD-DAAIERAVATVVAR 77 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH---HH--HHHHHHhCCeeEEEEecCCC-HHHHHHHHHHHHHH
Confidence 35777888889999999999999998776643221 11 12233457666665543223 23344545544443
No 238
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=51.37 E-value=66 Score=25.86 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=51.9
Q ss_pred HHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHH-HHCCCEEEEEcCCCCCHHHH
Q 021613 164 AVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRM-RLLGAEVRAVHSGTATLKDA 242 (310)
Q Consensus 164 a~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~-~~~GA~Vv~v~~~~~~~~da 242 (310)
+...+..|.+.+.+.+|+.+.+|++++.+|.+ +-..+.+++.|.... .+++ -.+|-.-+.++....+.++.
T Consensus 5 a~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~--RP~~pIiavt~~~~~------~r~l~l~~GV~p~~~~~~~~~~~~~ 76 (117)
T PF02887_consen 5 ARAAVELAEDLNAKAIVVFTESGRTARLISKY--RPKVPIIAVTPNESV------ARQLSLYWGVYPVLIEEFDKDTEEL 76 (117)
T ss_dssp HHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT---TSSEEEEEESSHHH------HHHGGGSTTEEEEECSSHSHSHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHHhh--CCCCeEEEEcCcHHH------HhhhhcccceEEEEeccccccHHHH
Confidence 44555667778888899999999998876543 456777777766432 1233 34687777776653356666
Q ss_pred HHHHHHHHHHc
Q 021613 243 TSEAIRDWVTN 253 (310)
Q Consensus 243 ~~~a~~~~~~~ 253 (310)
+..+.+...++
T Consensus 77 ~~~a~~~~~~~ 87 (117)
T PF02887_consen 77 IAEALEYAKER 87 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 66666655443
No 239
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=51.28 E-value=62 Score=29.88 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=33.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+++++. ++|--|.+++..|+.+|.+.+++. .. ..+.+.++.+|++.+.
T Consensus 157 ~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~~-~~-----~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 157 DKVAVL-GDGKLGLLIAQVLALTGPDVVLVG-RH-----SEKLALARRLGVETVL 204 (319)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCeEEEEc-CC-----HHHHHHHHHcCCcEEe
Confidence 345555 578999999999999999954432 22 3456677778986543
No 240
>PRK06197 short chain dehydrogenase; Provisional
Probab=51.10 E-value=1.6e+02 Score=27.20 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=42.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHH-C-CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-L-GAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~-~-GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|--|.++|..-.+.|.+++++...... ...-.+.++. . +.++..+..+-.+.+ .+..+.+.+.++
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~--~~~~~~~l~~~~~~~~~~~~~~Dl~d~~-~v~~~~~~~~~~ 92 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDK--GKAAAARITAATPGADVTLQELDLTSLA-SVRAAADALRAA 92 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHHHHHHhCCCCceEEEECCCCCHH-HHHHHHHHHHhh
Confidence 357788888899999999999999987776544221 1111223332 2 455655544322333 345545544443
No 241
>PRK12827 short chain dehydrogenase; Provisional
Probab=51.00 E-value=1.7e+02 Score=25.54 Aligned_cols=75 Identities=20% Similarity=0.155 Sum_probs=44.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCC--chhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQ--DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~--~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
+.++|+.++|--|.++|......|.+++++.... ..+....-...++..|.++..+..+-.+. +.+..+++...+
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~ 83 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDF-AATRAALDAGVE 83 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCH-HHHHHHHHHHHH
Confidence 3577888889999999999999999877654321 11111112234556677777666543233 334444444333
No 242
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=50.76 E-value=1.8e+02 Score=25.79 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=40.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHH-HHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRM-RLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~-~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
.++|+.++|..|.++|......|.+++++.... .++..+ ...|.++..+..+-.+. +.+..+++...+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~------~~~~~~~~~~~~~~~~~~~Dl~~~-~~i~~~~~~~~~ 70 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQ------ERLQELKDELGDNLYIAQLDVRNR-AAIEEMLASLPA 70 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECCH------HHHHHHHHHhccceEEEEecCCCH-HHHHHHHHHHHH
Confidence 367788889999999999999999877664321 122222 23466665555432233 233444443333
No 243
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=50.02 E-value=72 Score=27.34 Aligned_cols=48 Identities=8% Similarity=0.099 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEeCCCchhch-HHHH----HHHHHCCCEEEEEc
Q 021613 186 GQHGVATATVCARFGLQCIVYMGAQDMERQ-ALNV----FRMRLLGAEVRAVH 233 (310)
Q Consensus 186 GNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~-~~kv----~~~~~~GA~Vv~v~ 233 (310)
+|.+.+++..++++|+..+++.|..-.... ..-+ +..+..|.++...+
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 699999999999999999999998721001 1112 23344588877774
No 244
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=50.00 E-value=62 Score=30.65 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=32.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCC-eEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGL-QCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi-~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+.+++. ++|..|.+++..|+.+|+ +++++.+ . ..+...++.+|++-+
T Consensus 179 ~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~~-~-----~~~~~~~~~~g~~~v 226 (361)
T cd08231 179 DTVVVQ-GAGPLGLYAVAAAKLAGARRVIVIDG-S-----PERLELAREFGADAT 226 (361)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC-C-----HHHHHHHHHcCCCeE
Confidence 346665 579999999999999999 5544422 2 235556677887543
No 245
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=49.93 E-value=57 Score=32.61 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=37.5
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCC--chhchHHHHHHHHHCCCEEEE
Q 021613 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQ--DMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~--~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
|+..++||.|.-+|..+.++|.+++++.... .+......++.++..|.+++.
T Consensus 275 VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~ 328 (449)
T TIGR01316 275 VVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHF 328 (449)
T ss_pred EEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEe
Confidence 4457999999999999999999999987653 111122334567778887753
No 246
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.75 E-value=2e+02 Score=28.31 Aligned_cols=71 Identities=17% Similarity=0.097 Sum_probs=43.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+..+|+.++|.-|.++|....+.|.+++++-.... .....+....++++++.++-. + .+.+...++...++
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~---~~~l~~~~~~~~~~~~~~Dv~--~-~~~~~~~~~~~~~~ 281 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAA---GEALAAVANRVGGTALALDIT--A-PDAPARIAEHLAER 281 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCcc---HHHHHHHHHHcCCeEEEEeCC--C-HHHHHHHHHHHHHh
Confidence 34677888899999999999999999777644322 111122334567777776653 2 23344544444443
No 247
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=48.73 E-value=41 Score=32.42 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=41.8
Q ss_pred hcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCC
Q 021613 173 RLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT 236 (310)
Q Consensus 173 ~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~ 236 (310)
..|.+.. +..++|..|.-+|+.+..++=.-.|++|.-+ ...-...+...|+++++++.+.
T Consensus 37 ~~g~~~~-~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t---~~~~~~ai~~~G~~pv~~Di~~ 96 (363)
T PF01041_consen 37 YFGVKYA-VAVSSGTSALHLALRALGLGPGDEVIVPAYT---FPATASAILWAGAEPVFVDIDP 96 (363)
T ss_dssp HHTSSEE-EEESSHHHHHHHHHHHTTGGTTSEEEEESSS----THHHHHHHHTT-EEEEE-BET
T ss_pred HhCCCeE-EEeCChhHHHHHHHHhcCCCcCceEecCCCc---chHHHHHHHHhccEEEEEeccC
Confidence 4576655 5678899998888888443333677788865 3456677889999999998763
No 248
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=48.62 E-value=71 Score=28.07 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=32.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.+++...++ .|++++..++..|.+.+++.+.. .+.+.++.+|++.+.
T Consensus 136 ~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~~~ 183 (271)
T cd05188 136 DTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSD------EKLELAKELGADHVI 183 (271)
T ss_pred CEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCH------HHHHHHHHhCCceec
Confidence 3455555555 99999999999998776664432 344556677775443
No 249
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=48.57 E-value=93 Score=29.31 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=33.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+.++|. ++|..|.+++..|+.+|.+.++.+... ..|.+.++.+|++.+
T Consensus 162 ~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 162 KNVIII-GAGTIGLLAIQCAVALGAKSVTAIDIN-----SEKLALAKSLGAMQT 209 (347)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECCC-----HHHHHHHHHcCCceE
Confidence 345555 679999999999999999865554322 235556677787543
No 250
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=48.55 E-value=1e+02 Score=28.24 Aligned_cols=48 Identities=17% Similarity=0.294 Sum_probs=33.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+.+++...+|..|.+++..|+.+|.+++++.+. ..+.+.++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~~ 195 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTGK------EEQADYLKSLGASEV 195 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHhcCCcEE
Confidence 356666666999999999999999995544432 234455666777543
No 251
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=48.47 E-value=1.4e+02 Score=26.94 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=32.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.+++...+|..|.+++..|+.+|.+++.+.... .+.+.++.+|++-+.
T Consensus 144 ~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~~~ 192 (320)
T cd08243 144 DTLLIRGGTSSVGLAALKLAKALGATVTATTRSP------ERAALLKELGADEVV 192 (320)
T ss_pred CEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHhcCCcEEE
Confidence 3566655569999999999999999965554332 234455667765443
No 252
>PLN02740 Alcohol dehydrogenase-like
Probab=48.37 E-value=78 Score=30.54 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=32.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
.++| .++|.-|.+++..|+.+|.+-++.+-. ...+++..+.+||+.+.
T Consensus 201 ~VlV-~G~G~vG~~a~q~ak~~G~~~Vi~~~~-----~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 201 SVAI-FGLGAVGLAVAEGARARGASKIIGVDI-----NPEKFEKGKEMGITDFI 248 (381)
T ss_pred EEEE-ECCCHHHHHHHHHHHHCCCCcEEEEcC-----ChHHHHHHHHcCCcEEE
Confidence 4444 467999999999999999853343322 13466677778886433
No 253
>PRK05854 short chain dehydrogenase; Provisional
Probab=48.30 E-value=1.9e+02 Score=27.12 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=41.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHH-C-CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-L-GAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~-~-GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.+||+.+++--|.++|..-.+.|.+++++..... +....++.++. . +.++..+..+-.+.++ +.++.+...+.
T Consensus 16 ~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~--~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~s-v~~~~~~~~~~ 90 (313)
T PRK05854 16 RAVVTGASDGLGLGLARRLAAAGAEVILPVRNRA--KGEAAVAAIRTAVPDAKLSLRALDLSSLAS-VAALGEQLRAE 90 (313)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHhCCCCceEEEEecCCCHHH-HHHHHHHHHHh
Confidence 4677777788999999999999988776654322 11112223332 2 4566555543334443 44545544444
No 254
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=48.11 E-value=64 Score=27.63 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=37.8
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEc
Q 021613 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~ 233 (310)
.|+-.++|+-|...|..+..+|.+.+++ +.. ..+++..+.+++..+.++
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~--d~~----~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVP--DER----PERLRQLESLGAYFIEVD 70 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEE--ESS----HHHHHHHHHTTTEESEET
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEec--cCC----HHHHHhhhcccCceEEEc
Confidence 3455789999999999999999997765 332 456677888999988885
No 255
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=47.86 E-value=74 Score=30.87 Aligned_cols=50 Identities=18% Similarity=0.114 Sum_probs=35.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v 232 (310)
+.++|...+|.-|.+++..|+.+|.+.+++.+. ..+.+.++.+|++.+.-
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~------~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAGGGNPVAVVSS------PEKAEYCRELGAEAVID 240 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCC------HHHHHHHHHcCCCEEec
Confidence 455665556999999999999999997554322 23556777899876543
No 256
>PRK07062 short chain dehydrogenase; Provisional
Probab=47.74 E-value=2.1e+02 Score=25.59 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=42.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHH-C-CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-L-GAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~-~-GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.+++.-|.++|......|.+++++...... ...-.+.++. + +.++..+..+-.+. +.+.++.+...++
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~v~~~~~~~~~~ 84 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEER--LASAEARLREKFPGARLLAARCDVLDE-ADVAAFAAAVEAR 84 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHH--HHHHHHHHHhhCCCceEEEEEecCCCH-HHHHHHHHHHHHh
Confidence 356778888899999999999999997776554321 1111222322 3 34665554432233 3345545444443
No 257
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=47.51 E-value=1.9e+02 Score=25.67 Aligned_cols=71 Identities=15% Similarity=0.093 Sum_probs=41.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++|--|.++|....+.|.+++++..... ... ......+.++..+..+-.+ .+.+..+.+...++
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~---~~~--~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 77 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPA---RAR--LAALEIGPAAIAVSLDVTR-QDSIDRIVAAAVER 77 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH---HHH--HHHHHhCCceEEEEccCCC-HHHHHHHHHHHHHH
Confidence 35778888899999999999999998777644322 111 1222345555555443222 23344555544443
No 258
>PRK09291 short chain dehydrogenase; Provisional
Probab=47.50 E-value=1.1e+02 Score=26.95 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=26.8
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
.++|+.++|.-|.+++......|.+++++...
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47788888999999999999999988776653
No 259
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=47.44 E-value=76 Score=30.08 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=32.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v 232 (310)
.+++ .++|..|.+++..|+.+|.+.+++ .. .+.+++.++.+|++.++.
T Consensus 169 ~VlV-~G~G~vG~~a~~~a~~~G~~vi~~-~~-----~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 169 LVIV-IGAGGVGGYMVQTAKAMGAAVVAI-DI-----DPEKLEMMKGFGADLTLN 216 (349)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCeEEEE-cC-----CHHHHHHHHHhCCceEec
Confidence 4444 455999999999999999974433 22 234667778889875543
No 260
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=47.29 E-value=61 Score=29.85 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=32.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+.+++...+|..|.+++..|+.+|+++++.... ..+.+.++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~v 195 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLGYEVVASTGK------ADAADYLKKLGAKEV 195 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC------HHHHHHHHHcCCCEE
Confidence 356666666999999999999999986554332 224455566776433
No 261
>PRK07024 short chain dehydrogenase; Provisional
Probab=47.26 E-value=1.6e+02 Score=26.32 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=41.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~ 254 (310)
.++|+.++|--|.++|....+.|.+++++-.... ....-.+.++..+ ++..+..+-.+ .+.+.++.+.+.++.
T Consensus 4 ~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~-~~~~~~~Dl~~-~~~i~~~~~~~~~~~ 76 (257)
T PRK07024 4 KVFITGASSGIGQALAREYARQGATLGLVARRTD--ALQAFAARLPKAA-RVSVYAADVRD-ADALAAAAADFIAAH 76 (257)
T ss_pred EEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHhcccCC-eeEEEEcCCCC-HHHHHHHHHHHHHhC
Confidence 4778888899999999999999998766643321 0111111222223 56555543223 344556555554443
No 262
>CHL00194 ycf39 Ycf39; Provisional
Probab=47.12 E-value=92 Score=29.15 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=27.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
+++|+.++|.-|..++-.....|.+++++...
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 46788889999999999999999998888754
No 263
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=46.63 E-value=2.1e+02 Score=25.38 Aligned_cols=31 Identities=16% Similarity=-0.006 Sum_probs=26.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
.++|+.++|.-|.++|...+..|.+++++-.
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 4778888899999999999999998777654
No 264
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=46.60 E-value=83 Score=30.32 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=35.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.++|...+|..|.+++..|+.+|.+.+++.+. ..+.+.++.+|++.+.
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s------~~~~~~~~~~G~~~~i 243 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAAGANPVAVVSS------EEKAEYCRALGAEGVI 243 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCC------HHHHHHHHHcCCCEEE
Confidence 455565556999999999999999997655432 3466677889986544
No 265
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=46.31 E-value=1e+02 Score=28.33 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=34.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v 232 (310)
+.+++...+|..|++++..|+.+|.+.+++... ..+.+.++.+|++.+..
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKYGAATIITTSS------EEKVDFCKKLAAIILIR 191 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCcEEEe
Confidence 356665567899999999999999987654332 23445556688864443
No 266
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=46.02 E-value=1.7e+02 Score=28.40 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=51.9
Q ss_pred cCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 174 LGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 174 ~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.| +=.||+.++.--|.+.|.--++.|++++++-.... .-...+.+..+.++++|..+.-+..+-++ .-+.++...++
T Consensus 48 ~g-~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~-KL~~v~kEI~~~~~vev~~i~~Dft~~~~-~ye~i~~~l~~ 124 (312)
T KOG1014|consen 48 LG-SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQE-KLEAVAKEIEEKYKVEVRIIAIDFTKGDE-VYEKLLEKLAG 124 (312)
T ss_pred cC-CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHHHhCcEEEEEEEecCCCch-hHHHHHHHhcC
Confidence 45 33456666667999999999999999666544322 12445666778899888776554322222 33445555555
Q ss_pred cCCceeec
Q 021613 254 VETTHYIL 261 (310)
Q Consensus 254 ~~~~~Yi~ 261 (310)
.+-.-.++
T Consensus 125 ~~VgILVN 132 (312)
T KOG1014|consen 125 LDVGILVN 132 (312)
T ss_pred CceEEEEe
Confidence 55444443
No 267
>PRK06924 short chain dehydrogenase; Provisional
Probab=45.91 E-value=1.9e+02 Score=25.52 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=26.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
.++++.++|.-|.++|....+.|.+++++-.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISR 33 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeC
Confidence 4677888899999999999999998776654
No 268
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.68 E-value=2e+02 Score=24.97 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=27.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
+.++++.++|.-|.+++....+.|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 357788888999999999999999988877654
No 269
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=45.58 E-value=92 Score=29.33 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=32.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+++++. ++|..|.+++..|+.+|.+.++.+... ..+.+..+.+|++.+
T Consensus 168 ~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~ 215 (351)
T cd08285 168 DTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGSR-----PNRVELAKEYGATDI 215 (351)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCceE
Confidence 345555 678999999999999999755554332 235566677887544
No 270
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=45.17 E-value=85 Score=26.42 Aligned_cols=61 Identities=28% Similarity=0.189 Sum_probs=41.3
Q ss_pred hhhcCCCeEEEecCcchHHH-HHHHHHHHcCCeEEEEeCCC---chhchHHHHHHHHHCCCEEEE
Q 021613 171 AKRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~-AlA~aaa~~Gi~~~Ivmp~~---~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+++.|.+.+|++.-..+.++ +.|..+...|++++|+-... ..+....-+..|+..|++|+.
T Consensus 107 L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~~~~~~~~h~~~l~~l~~~~~~v~t 171 (174)
T PF00857_consen 107 LRKRGIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDACASYSPEAHEAALEELRKRGAEVIT 171 (174)
T ss_dssp HHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEEEEBSSHHHHHHHHHHHHHHTSEEE-
T ss_pred ccccccceEEEcccccCcEEehhHHHHHHCCCEEEEEChhhcCCCHHHHHHHHHHHHhCCCEEEe
Confidence 44578888888766667554 66777888999999887432 222245567788888998864
No 271
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=44.89 E-value=1.7e+02 Score=24.62 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=42.3
Q ss_pred hhcCCCeEEEecCcchHH-HHHHHHHHHcCCeEEEEeCCCch---hchHHHHHHHHHCCCEEEE
Q 021613 172 KRLGKTRIIAETGAGQHG-VATATVCARFGLQCIVYMGAQDM---ERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 172 ~~~g~~~~Vv~aSsGNhg-~AlA~aaa~~Gi~~~Ivmp~~~~---~~~~~kv~~~~~~GA~Vv~ 231 (310)
++.|.+.+|++.-..|.+ .++|..+...|++++|+...... +....-+..|+..|++|+.
T Consensus 84 ~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~as~~~~~h~~al~~~~~~~~~v~~ 147 (157)
T cd01012 84 KATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACGSRSKEDHELALARMRQAGAVLTT 147 (157)
T ss_pred HhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCCCCCCHHHHHHHHHHHHHCCCEEee
Confidence 357888888877777766 46677788899999988765322 2134557788888998853
No 272
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=44.75 E-value=92 Score=29.77 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=32.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.++|. ++|.-|.+++..++.+|..-++++... ..|.+.++.+|++-+.
T Consensus 186 ~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~~-----~~~~~~~~~~ga~~~i 234 (365)
T cd08277 186 STVAVF-GLGAVGLSAIMGAKIAGASRIIGVDIN-----EDKFEKAKEFGATDFI 234 (365)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCCcEe
Confidence 345555 679999999999999999533333222 2456667778885443
No 273
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=44.25 E-value=86 Score=28.89 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=32.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v 232 (310)
+++++. ++|..|.+++..|+.+|.+++++.+. ..+.+.++.+|++.+..
T Consensus 167 ~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~s------~~~~~~~~~~g~~~~~~ 215 (338)
T cd08254 167 ETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDIK------EEKLELAKELGADEVLN 215 (338)
T ss_pred CEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcCC------HHHHHHHHHhCCCEEEc
Confidence 356664 56889999999999999985544332 23445567778754443
No 274
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=44.11 E-value=1.6e+02 Score=27.23 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=31.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcC-CeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFG-LQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~G-i~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+++++.. +|..|.+++..|+.+| .+++++... ..+.+.++.+|++-+
T Consensus 169 ~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~~------~~~~~~~~~~g~~~~ 216 (340)
T cd05284 169 STVVVIG-VGGLGHIAVQILRALTPATVIAVDRS------EEALKLAERLGADHV 216 (340)
T ss_pred CEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeCC------HHHHHHHHHhCCcEE
Confidence 3455554 6669999999999999 776655332 234456677787443
No 275
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=44.08 E-value=3.5e+02 Score=27.21 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=51.5
Q ss_pred CCCCCCChHHHHHHHHHHHhhhc-----CCCeEEEecCcchHHHH--HHHHHHHcCCeEEEEeCCCch-h---------c
Q 021613 152 DLNHTGAHKINNAVGQALLAKRL-----GKTRIIAETGAGQHGVA--TATVCARFGLQCIVYMGAQDM-E---------R 214 (310)
Q Consensus 152 ~lnpTGSfK~Rga~~~l~~a~~~-----g~~~~Vv~aSsGNhg~A--lA~aaa~~Gi~~~Ivmp~~~~-~---------~ 214 (310)
+-+|.|.-+ ....++...+.+ |.+..+|+.+++..|.| +|.+. ..|-+.+++.-.... . .
T Consensus 14 ~~hp~gc~~--~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~ 90 (398)
T PRK13656 14 TAHPVGCEA--NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYN 90 (398)
T ss_pred CCCCHHHHH--HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccch
Confidence 344555433 244555555443 33467777777777777 66677 788887766422110 0 0
Q ss_pred hHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 021613 215 QALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (310)
Q Consensus 215 ~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~ 254 (310)
...-.+.++..|..+..+..+- +-.+.+++.++...+++
T Consensus 91 ~~a~~~~a~~~G~~a~~i~~DV-ss~E~v~~lie~I~e~~ 129 (398)
T PRK13656 91 SAAFDKFAKAAGLYAKSINGDA-FSDEIKQKVIELIKQDL 129 (398)
T ss_pred HHHHHHHHHhcCCceEEEEcCC-CCHHHHHHHHHHHHHhc
Confidence 0111234566787766554432 22344555555544443
No 276
>PRK06482 short chain dehydrogenase; Provisional
Probab=44.04 E-value=2e+02 Score=25.84 Aligned_cols=69 Identities=6% Similarity=0.011 Sum_probs=41.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHH-HCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR-LLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~-~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
.++|+.++|.-|.++|..-...|.+++++.... .++..++ ..+.++..+..+-.+ .+.+..+++.+.++
T Consensus 4 ~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~------~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 73 (276)
T PRK06482 4 TWFITGASSGFGRGMTERLLARGDRVAATVRRP------DALDDLKARYGDRLWVLQLDVTD-SAAVRAVVDRAFAA 73 (276)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHhccCceEEEEccCCC-HHHHHHHHHHHHHH
Confidence 467888889999999999999999887765432 1222232 235555554443222 23345555544443
No 277
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=43.89 E-value=1.8e+02 Score=26.96 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=32.1
Q ss_pred CeEEEecCcchHHHHHHHHHHH-cCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCAR-FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~-~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v 232 (310)
+.+++.. +|--|.+++..|+. +|.+.+++.+. ..+.+.++.+|++.+..
T Consensus 164 ~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~------~~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 164 QWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDIN------DDKLALAKEVGADLTIN 213 (338)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCC------hHHHHHHHHcCCcEEec
Confidence 3455554 68889998888887 59886555332 23556667788765443
No 278
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=43.67 E-value=78 Score=29.11 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=35.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.+++...+|..|++++..|+.+|.+++++... +.|.+.++.+|++-++
T Consensus 148 ~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~------~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 148 GPVLVTGAAGGVGSVAVALLARLGYEVVASTGR------PEEADYLRSLGASEII 196 (324)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC------HHHHHHHHhcCCCEEE
Confidence 356666666999999999999999986555432 3456677888985443
No 279
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=43.65 E-value=96 Score=29.05 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=32.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
..+++ .+.|..|.+++..++.+|++.+++.+.. .+.+.++.+|++-++
T Consensus 171 ~~vlV-~g~g~vG~~~~~~a~~~G~~v~~~~~~~------~~~~~~~~~g~~~vi 218 (337)
T cd05283 171 KRVGV-VGIGGLGHLAVKFAKALGAEVTAFSRSP------SKKEDALKLGADEFI 218 (337)
T ss_pred CEEEE-ECCcHHHHHHHHHHHHcCCeEEEEcCCH------HHHHHHHHcCCcEEe
Confidence 34555 4578999999999999999765554332 244555667775443
No 280
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=43.61 E-value=1.2e+02 Score=29.68 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=38.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~ 234 (310)
...|.-.+.|-.|.....+|+.+|.+++.+-. +..|++..+.+||+.+....
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~------~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITR------SEEKLELAKKLGADHVINSS 218 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeC------ChHHHHHHHHhCCcEEEEcC
Confidence 33455567777777777788889977776643 34688899999999988865
No 281
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=43.45 E-value=2e+02 Score=26.59 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=32.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~ 228 (310)
+.+++. ++|..|.+++..|+.+|++++++.... ...+.+.++.+|++
T Consensus 166 ~~vlI~-g~g~~g~~~~~la~~~G~~v~~~~~~~----~~~~~~~~~~~g~~ 212 (306)
T cd08258 166 DTVVVF-GPGPIGLLAAQVAKLQGATVVVVGTEK----DEVRLDVAKELGAD 212 (306)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCEEEEECCCC----CHHHHHHHHHhCCc
Confidence 356664 578999999999999999954431222 23456677778875
No 282
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=43.43 E-value=58 Score=33.59 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=37.7
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCc---------------hhchHHHHHHHHHCCCEEEEE
Q 021613 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQD---------------MERQALNVFRMRLLGAEVRAV 232 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~---------------~~~~~~kv~~~~~~GA~Vv~v 232 (310)
|+..++|-.|.+.|..++++|.+++|+=.... .+....+++.++.+|++++.-
T Consensus 140 V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 140 VAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 45579999999999999999999877632110 001244667788899987653
No 283
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=43.35 E-value=1.1e+02 Score=28.19 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=32.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
.+++. ++|..|.+++..++.+|++.+++.+.. .+.+.++.+|++.+.
T Consensus 165 ~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~~~------~~~~~~~~~g~~~~~ 211 (330)
T cd08245 165 RVAVL-GIGGLGHLAVQYARAMGFETVAITRSP------DKRELARKLGADEVV 211 (330)
T ss_pred EEEEE-CCCHHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHhCCcEEe
Confidence 45555 667799999999999999876664432 244556667775444
No 284
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=43.28 E-value=1.8e+02 Score=28.14 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=30.3
Q ss_pred cCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 174 LGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 174 ~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
.|.+.++ ..++|..|..++..+...+-.-.|++|.... ......++..|++++.++.+
T Consensus 44 ~g~~~~v-~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~---~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 44 FGSAKVL-LTPSCTAALEMAALLLDIQPGDEVIMPSYTF---VSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred hCCCeEE-EECCHHHHHHHHHHHhCCCCCCEEEECCCCc---HHHHHHHHHcCCEEEEEecC
Confidence 3445443 4556666655544433222223556665432 23345566677777777654
No 285
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=43.28 E-value=1.8e+02 Score=27.70 Aligned_cols=50 Identities=22% Similarity=0.189 Sum_probs=33.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v 232 (310)
+.++|. ++|.-|.+++..|+.+|.+.++..... ..|.+.++.+|++.++.
T Consensus 188 ~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~~-----~~k~~~~~~~g~~~~i~ 237 (365)
T cd08278 188 SSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDIV-----DSRLELAKELGATHVIN 237 (365)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCcEEec
Confidence 345555 678999999999999999754444332 34566677788764443
No 286
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.11 E-value=1.9e+02 Score=25.84 Aligned_cols=31 Identities=16% Similarity=0.047 Sum_probs=23.9
Q ss_pred eEEEecCc--chHHHHHHHHHHHcCCeEEEEeC
Q 021613 178 RIIAETGA--GQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 178 ~~Vv~aSs--GNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
..+|+.++ +.-|.++|....+.|.++++.-.
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 45666665 57999999999999998776643
No 287
>PRK08264 short chain dehydrogenase; Validated
Probab=43.10 E-value=1.4e+02 Score=26.17 Aligned_cols=32 Identities=9% Similarity=-0.017 Sum_probs=26.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCC-eEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGL-QCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi-~~~Ivmp 208 (310)
+.++|+.++|.-|.++|....+.|. +++++..
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 4578888899999999999999998 7666654
No 288
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=42.85 E-value=1.1e+02 Score=28.31 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=32.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~V 229 (310)
+.+++ .++|.-|.+++..++.+|++.+++.+.. .+.+.++.+|++-
T Consensus 169 ~~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~~------~~~~~~~~~g~~~ 214 (329)
T cd08298 169 QRLGL-YGFGASAHLALQIARYQGAEVFAFTRSG------EHQELARELGADW 214 (329)
T ss_pred CEEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCCh------HHHHHHHHhCCcE
Confidence 34555 4678899999999999999876654433 2445567788754
No 289
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=42.80 E-value=1.7e+02 Score=27.10 Aligned_cols=74 Identities=24% Similarity=0.205 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHhhhcCCCeEEEecCcchHH-H-HHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcC
Q 021613 159 HKINNAVGQALLAKRLGKTRIIAETGAGQHG-V-ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (310)
Q Consensus 159 fK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg-~-AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~ 234 (310)
.|..-+.+..+.++-.|.+-+-++++||..+ . ..-..+.+.-.+..+++..+-. +..+.+.+...||+++.++.
T Consensus 137 ~~~~iaa~~alA~~~~g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIr--s~e~A~~~~~aGAD~IVvGn 212 (230)
T PF01884_consen 137 DKPEIAAAAALAAEYLGMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIR--SPEQAREMAEAGADTIVVGN 212 (230)
T ss_dssp SHHHHHHHHHHHHHHTT-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS----SHHHHHHHHCTTSSEEEESC
T ss_pred CcHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcC--CHHHHHHHHHCCCCEEEECC
Confidence 4555565555566667888888899888422 2 3333344444677788877642 46777888899999999985
No 290
>PRK06180 short chain dehydrogenase; Provisional
Probab=42.65 E-value=2.2e+02 Score=25.79 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=26.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.++|+.++|.-|.+++....+.|.+++++..
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeC
Confidence 34788888899999999999999999777654
No 291
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=42.60 E-value=2.5e+02 Score=26.18 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=25.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.++|+.++|--|.++|....+.|.+++++..
T Consensus 7 k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 7 GTVIITGASSGVGLYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CEEEEEcCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 35778888888999999999889988766643
No 292
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=42.47 E-value=1.4e+02 Score=31.15 Aligned_cols=52 Identities=21% Similarity=0.295 Sum_probs=32.2
Q ss_pred CeEEEecCcch-H--HHHHHHHHHHcCCeEEEEeCCCchhc-hHHHHHHHHHCCCE
Q 021613 177 TRIIAETGAGQ-H--GVATATVCARFGLQCIVYMGAQDMER-QALNVFRMRLLGAE 228 (310)
Q Consensus 177 ~~~Vv~aSsGN-h--g~AlA~aaa~~Gi~~~Ivmp~~~~~~-~~~kv~~~~~~GA~ 228 (310)
++++|.+|.|| - |..+|-.....|.+++|++|...... ....+.+++.+|..
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~ 191 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVP 191 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCC
Confidence 35777788886 3 34455555557999999997642211 11245667777754
No 293
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=42.47 E-value=2.2e+02 Score=25.95 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=31.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~V 229 (310)
+.+++...+|..|.+++..|+.+|.+.+++.+.. .+.+.++.+|++-
T Consensus 144 ~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~------~~~~~~~~~g~~~ 190 (324)
T cd08244 144 DVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGP------AKTALVRALGADV 190 (324)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHcCCCE
Confidence 4566666689999999999999999865553322 2334455667643
No 294
>PRK07856 short chain dehydrogenase; Provisional
Probab=42.44 E-value=2.3e+02 Score=25.12 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=26.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.++|+.++|--|.++|......|.+++++..
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r 38 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGR 38 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 35678888889999999999999998777644
No 295
>PRK07831 short chain dehydrogenase; Provisional
Probab=42.32 E-value=2.5e+02 Score=25.03 Aligned_cols=74 Identities=20% Similarity=0.196 Sum_probs=40.0
Q ss_pred CeEEEecCcc-hHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHH-CCC-EEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAG-QHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGA-EVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsG-Nhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~-~GA-~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.++| .-|.++|......|.+++++-.... +.....+.++. +|. ++..+..+-.+ .+.+..+++...++
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 94 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHER--RLGETADELAAELGLGRVEAVVCDVTS-EAQVDALIDAAVER 94 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHHhcCCceEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 3467777766 6999999999999998655433221 11122233333 564 56555443222 23345545444333
No 296
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=42.04 E-value=1.7e+02 Score=26.24 Aligned_cols=60 Identities=18% Similarity=0.108 Sum_probs=42.4
Q ss_pred hhhcCCCeEEEecCcchHHH-HHHHHHHHcCCeEEEEeCCCch---hchHHHHHHHHHCCCEEE
Q 021613 171 AKRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGAQDM---ERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~-AlA~aaa~~Gi~~~Ivmp~~~~---~~~~~kv~~~~~~GA~Vv 230 (310)
+++.|.+.+|++.-..|+++ +.|.-+..+|++++|+-..... +....-+..|+..|++|+
T Consensus 141 L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~ 204 (212)
T PTZ00331 141 LKAHGVRRVFICGLAFDFCVLFTALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILL 204 (212)
T ss_pred HHHCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEE
Confidence 34678888888887888776 5666777799999888754321 113344677888998885
No 297
>PRK12831 putative oxidoreductase; Provisional
Probab=42.03 E-value=90 Score=31.47 Aligned_cols=52 Identities=15% Similarity=0.251 Sum_probs=36.3
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCc--hhchHHHHHHHHHCCCEEEE
Q 021613 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQD--MERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~--~~~~~~kv~~~~~~GA~Vv~ 231 (310)
|+.-++||.|.-+|..+.++|.+++++..... +......++.++..|.+++.
T Consensus 284 VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~ 337 (464)
T PRK12831 284 VAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDL 337 (464)
T ss_pred EEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 44579999999999999999999988876431 11122334456667876653
No 298
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=41.90 E-value=1.8e+02 Score=26.32 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=32.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCe-EEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQ-CIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~-~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.+++. ++|-.|.+++..|+.+|.+ .+++ ... ..+...++.+|++-+.
T Consensus 131 ~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~-~~~-----~~~~~~~~~~g~~~~~ 179 (312)
T cd08269 131 KTVAVI-GAGFIGLLFLQLAAAAGARRVIAI-DRR-----PARLALARELGATEVV 179 (312)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE-CCC-----HHHHHHHHHhCCceEe
Confidence 345665 5688999999999999999 5443 222 2344566778875443
No 299
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=41.86 E-value=91 Score=29.88 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=34.2
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHH-HHHCCCEEEEE
Q 021613 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFR-MRLLGAEVRAV 232 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~-~~~~GA~Vv~v 232 (310)
+.+..-.+|...+++.+++++|++++++-|+.-.. +..-++. .+..|.++...
T Consensus 155 i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~-~~~~~~~~~~~~g~~~~~~ 208 (304)
T PRK00779 155 VAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEP-DPEIVEKIAKETGASIEVT 208 (304)
T ss_pred EEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCC-CHHHHHHHHHHcCCeEEEE
Confidence 33333346899999999999999999999986321 1111222 34456665544
No 300
>PRK07102 short chain dehydrogenase; Provisional
Probab=41.77 E-value=2.4e+02 Score=24.82 Aligned_cols=56 Identities=13% Similarity=-0.011 Sum_probs=36.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHH-CCCEEEEEcCC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGAEVRAVHSG 235 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~-~GA~Vv~v~~~ 235 (310)
.++++.++|.-|.++|....+.|.+++++...... .....+.++. .+.++..+..+
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~D 59 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVER--LERLADDLRARGAVAVSTHELD 59 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHH--HHHHHHHHHHhcCCeEEEEecC
Confidence 46788888999999999999999987777544321 1122223332 35577666554
No 301
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.74 E-value=2.4e+02 Score=24.70 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=26.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.++|+.++|.-|.++|......|.++++...
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 35788888999999999999999998776543
No 302
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=41.71 E-value=2.2e+02 Score=25.05 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=40.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++++.++|.-|.++|....+.|.+++++.... .+..+.++..+..+-.+ .+.++++++...++
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~-----------~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 73 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF-----------LTQEDYPFATFVLDVSD-AAAVAQVCQRLLAE 73 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch-----------hhhcCCceEEEEecCCC-HHHHHHHHHHHHHH
Confidence 4577888888999999999999999888775322 22345555555443222 33345555544443
No 303
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=41.39 E-value=1.3e+02 Score=29.31 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=33.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.+++ .++|.-|.+++..|+.+|.+.+++.... ..+.+.++.+|++.+.
T Consensus 180 ~~VlV-~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~-----~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 180 KRLGV-NGLGGLGHIAVKIGKAFGLRVTVISRSS-----EKEREAIDRLGADSFL 228 (375)
T ss_pred CEEEE-EcccHHHHHHHHHHHHcCCeEEEEeCCh-----HHhHHHHHhCCCcEEE
Confidence 34544 5679999999999999999855553332 2234566778987544
No 304
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=41.31 E-value=41 Score=33.38 Aligned_cols=30 Identities=37% Similarity=0.473 Sum_probs=26.9
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
.-|+|+.|+-+|.+|+++|++++|+-|..+
T Consensus 6 IlGGGQLgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 6 ILGGGQLGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred EEcCcHHHHHHHHHHHhcCCEEEEecCCCC
Confidence 348999999999999999999999998754
No 305
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=41.25 E-value=95 Score=31.45 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHHc-CCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEc
Q 021613 186 GQHGVATATVCARF-GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (310)
Q Consensus 186 GNhg~AlA~aaa~~-Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~ 233 (310)
+|.+.+++.+++.+ |++++++-|....- +..-++.++..|.+|...+
T Consensus 253 ~rv~~Sl~~~la~~~G~~v~l~~P~~~~~-~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 253 GRTVHSLVKLLALYRGLKFTLVSPPTLEM-PAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred ChHHHHHHHHHHHhcCCEEEEECCCcccc-CHHHHHHHHhcCCeEEEEc
Confidence 48899999997765 99999999987421 2233344555676665543
No 306
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=40.89 E-value=1.3e+02 Score=28.05 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=33.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.++|...+|.-|++++..|+.+|.+++++.. . . +.+.++.+|++.+.
T Consensus 179 ~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~--~----~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 179 ETVLVTGASGGVGSALVQLAKRRGAIVIAVAG--A----A-KEEAVRALGADTVI 226 (350)
T ss_pred CEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeC--c----h-hhHHHHhcCCeEEE
Confidence 35666555699999999999999999655432 1 1 44566778886443
No 307
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=40.74 E-value=1.3e+02 Score=27.90 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=32.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHc-CCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARF-GLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~-Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.+++...+|..|.+++..|+.+ |++++.+... ..+.+.++.+|++-+.
T Consensus 150 ~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~------~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 150 RALLIIGGAGGVGSILIQLARQLTGLTVIATASR------PESQEWVLELGAHHVI 199 (336)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc------HHHHHHHHHcCCCEEE
Confidence 34566566788999999999987 9887665433 2344556667875443
No 308
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.73 E-value=3.3e+02 Score=25.99 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=47.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHH-HHHHHCCC-E-EEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNV-FRMRLLGA-E-VRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv-~~~~~~GA-~-Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+-+||+..|---|.++|+.-++.|.+.+++..... ...++ +.++..|+ + |+.+..+-.+.++ +..+.+....+
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~r---rl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~-~~~~~~~~~~~ 88 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRAR---RLERVAEELRKLGSLEKVLVLQLDVSDEES-VKKFVEWAIRH 88 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhh---hHHHHHHHHHHhCCcCccEEEeCccCCHHH-HHHHHHHHHHh
Confidence 34566666667899999999999999999887654 34455 66666654 4 5555544334444 45555333334
Q ss_pred cC
Q 021613 254 VE 255 (310)
Q Consensus 254 ~~ 255 (310)
+.
T Consensus 89 fg 90 (282)
T KOG1205|consen 89 FG 90 (282)
T ss_pred cC
Confidence 33
No 309
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=40.43 E-value=83 Score=31.63 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=31.3
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEE
Q 021613 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~V 229 (310)
.|+..|.|.-|..+|..++.+|.+++++=+. +.+....+.+|+++
T Consensus 204 tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d------~~R~~~A~~~G~~~ 248 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQGARVIVTEVD------PICALQAAMEGYEV 248 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECC------hhhHHHHHhcCCEE
Confidence 4556899999999999999999986554221 23444555566654
No 310
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=40.36 E-value=1.7e+02 Score=25.95 Aligned_cols=61 Identities=21% Similarity=0.145 Sum_probs=43.4
Q ss_pred hhcCCCeEEEecCcchHHH-HHHHHHHHcCCeEEEEeCCCch-----hchHHHHHHHHHCCCEEEEE
Q 021613 172 KRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGAQDM-----ERQALNVFRMRLLGAEVRAV 232 (310)
Q Consensus 172 ~~~g~~~~Vv~aSsGNhg~-AlA~aaa~~Gi~~~Ivmp~~~~-----~~~~~kv~~~~~~GA~Vv~v 232 (310)
.+.|.+.+|++.-..|.++ +.|..|..+|++++|+-..... +.....+..|+..|++|+..
T Consensus 138 ~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~t~ 204 (212)
T PRK11609 138 REHGITELIVMGLATDYCVKFTVLDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLYTL 204 (212)
T ss_pred HHcCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEEEH
Confidence 3578888888877777664 6788888899999988765422 11234577788889888643
No 311
>PRK05875 short chain dehydrogenase; Provisional
Probab=40.11 E-value=2.8e+02 Score=24.90 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=26.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.++|+.++|.-|.++|......|.+++++..
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r 39 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGR 39 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC
Confidence 45778888899999999999999998777654
No 312
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=39.97 E-value=1.5e+02 Score=27.11 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=26.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.+++..++|..|.+++..++.+|.+++++..
T Consensus 164 ~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~ 195 (332)
T cd08259 164 DTVLVTGAGGGVGIHAIQLAKALGARVIAVTR 195 (332)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCeEEEEeC
Confidence 35666677789999999999999999776653
No 313
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=39.55 E-value=1.8e+02 Score=25.89 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhc---C---CCeEEEecCcchHHHHHHHHHHHcCCeEEEE
Q 021613 162 NNAVGQALLAKRL---G---KTRIIAETGAGQHGVATATVCARFGLQCIVY 206 (310)
Q Consensus 162 Rga~~~l~~a~~~---g---~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Iv 206 (310)
+|+.+.+..+.+. + ..+.|+.-+.||.|..+|......|.+++++
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 5555555554332 2 1233455788999999999999999988754
No 314
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=39.29 E-value=1.8e+02 Score=30.23 Aligned_cols=54 Identities=22% Similarity=0.148 Sum_probs=38.5
Q ss_pred EEecCc---chHHHHHHHHHHHcC-CeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcC
Q 021613 180 IAETGA---GQHGVATATVCARFG-LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (310)
Q Consensus 180 Vv~aSs---GNhg~AlA~aaa~~G-i~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~ 234 (310)
|+-.+. +|.+.+++.+++++| ++++++.|....- +..-++.++..|+++...+.
T Consensus 177 Va~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~-p~~~~~~a~~~G~~v~i~~d 234 (525)
T PRK13376 177 IALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAM-PEHYVEKMKKNGFEVRIFSS 234 (525)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccC-CHHHHHHHHHcCCeEEEEcC
Confidence 333455 588999999999998 9999999987421 23334566668888876653
No 315
>PRK07074 short chain dehydrogenase; Provisional
Probab=39.26 E-value=2.7e+02 Score=24.59 Aligned_cols=31 Identities=19% Similarity=0.088 Sum_probs=25.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
.++|+.++|.-|.++|......|.+++++..
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~~v~~~~r 34 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGDRVLALDI 34 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCCEEEEEeC
Confidence 4677888889999999999999998777653
No 316
>PLN02342 ornithine carbamoyltransferase
Probab=38.95 E-value=1.7e+02 Score=28.83 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=24.4
Q ss_pred Ccc-hHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 184 GAG-QHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 184 SsG-Nhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
|.+ |...+++.+++++|++++++-|...
T Consensus 201 GD~~nva~Sli~~~~~~G~~v~~~~P~~~ 229 (348)
T PLN02342 201 GDGNNIVHSWLLLAAVLPFHFVCACPKGY 229 (348)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEECCccc
Confidence 444 7999999999999999999999864
No 317
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=38.80 E-value=91 Score=30.34 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=24.7
Q ss_pred cCcc--hHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 183 TGAG--QHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 183 aSsG--Nhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
.|.+ |.+.+++.+++++|++++++.|...
T Consensus 161 vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 191 (332)
T PRK04284 161 VGDGRNNVANALMQGAAIMGMDFHLVCPKEL 191 (332)
T ss_pred ecCCCcchHHHHHHHHHHcCCEEEEECCccc
Confidence 4443 8999999999999999999999863
No 318
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=38.67 E-value=46 Score=29.08 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=24.3
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~ 210 (310)
.-|+|..|.++|..+++.|++++++-+..
T Consensus 4 ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 4 VIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 35889999999999999999999998764
No 319
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=38.42 E-value=2.1e+02 Score=22.94 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=35.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEe-CCCchhchHH-HHHHHHHCCCEEEEEcCC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYM-GAQDMERQAL-NVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivm-p~~~~~~~~~-kv~~~~~~GA~Vv~v~~~ 235 (310)
.++++.++|..|.+++....+.|...++++ .......... -...++..|.++..+..+
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACD 61 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECC
Confidence 356778888999999999988887544444 3221110111 134556678887776654
No 320
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=38.33 E-value=2.9e+02 Score=24.62 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=40.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHH-HHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRM-RLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~-~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.+++.-|.++|......|.+++++-... .+.+.+ +.++.++..+..+-.+.+ .+..+++...++
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~------~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~~~~ 77 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSA------EKLASLRQRFGDHVLVVEGDVTSYA-DNQRAVDQTVDA 77 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHHhCCcceEEEccCCCHH-HHHHHHHHHHHh
Confidence 3577888888999999999999999876654322 122222 234555555544322333 344444444343
No 321
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=37.97 E-value=1.5e+02 Score=28.38 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=31.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
.++|. ++|--|.+++..|+.+|.+.+++.... ..+...++.+|++.+.
T Consensus 183 ~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~~-----~~~~~~~~~~Ga~~~i 230 (357)
T PLN02514 183 RGGIL-GLGGVGHMGVKIAKAMGHHVTVISSSD-----KKREEALEHLGADDYL 230 (357)
T ss_pred eEEEE-cccHHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHhcCCcEEe
Confidence 34444 678999999999999999865554322 1222345668887443
No 322
>PRK07904 short chain dehydrogenase; Provisional
Probab=37.96 E-value=3e+02 Score=24.70 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=34.5
Q ss_pred eEEEecCcchHHHHHHHHHHHc-CCeEEEEeCCCchhchHHHHHHHHHCCC-EEEEEcC
Q 021613 178 RIIAETGAGQHGVATATVCARF-GLQCIVYMGAQDMERQALNVFRMRLLGA-EVRAVHS 234 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~-Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA-~Vv~v~~ 234 (310)
.++|+.++|--|.++|....+. |.+++++....... .....+.++..|. ++..+..
T Consensus 10 ~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~-~~~~~~~l~~~~~~~v~~~~~ 67 (253)
T PRK07904 10 TILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPR-RDAAVAQMKAAGASSVEVIDF 67 (253)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchh-HHHHHHHHHhcCCCceEEEEe
Confidence 4677788888999999888777 48887775443210 1122344555554 5555544
No 323
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=37.69 E-value=1.4e+02 Score=27.89 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=31.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~ 228 (310)
++++.+ +|..|.+++..|+.+|++.+++.... .+.+.++.+|++
T Consensus 168 ~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~------~~~~~~~~~g~~ 211 (345)
T cd08260 168 WVAVHG-CGGVGLSAVMIASALGARVIAVDIDD------DKLELARELGAV 211 (345)
T ss_pred EEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCH------HHHHHHHHhCCC
Confidence 455555 78999999999999999876664432 244555667773
No 324
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=37.48 E-value=2.9e+02 Score=24.59 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=31.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~ 228 (310)
+.+++...+|..|++++..++.+|++.+++.+.. .+.+.++.+|++
T Consensus 122 ~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~ 167 (303)
T cd08251 122 EHILIQTATGGTGLMAVQLARLKGAEIYATASSD------DKLEYLKQLGVP 167 (303)
T ss_pred CEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCH------HHHHHHHHcCCC
Confidence 3456656778899999999999999865554332 234445667764
No 325
>PRK05872 short chain dehydrogenase; Provisional
Probab=37.28 E-value=3.4e+02 Score=25.04 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=25.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEe
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYM 207 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivm 207 (310)
+.++|+.++|.-|.++|....+.|.+++++-
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 40 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVD 40 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 3577888889999999999999998766654
No 326
>PLN02827 Alcohol dehydrogenase-like
Probab=37.09 E-value=1.6e+02 Score=28.41 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=32.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
.++| .++|--|.+++..|+.+|.+.++.+... ..|.+.++.+|++-+
T Consensus 196 ~VlV-~G~G~vG~~~iqlak~~G~~~vi~~~~~-----~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 196 SVVI-FGLGTVGLSVAQGAKLRGASQIIGVDIN-----PEKAEKAKTFGVTDF 242 (378)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCCeEEEECCC-----HHHHHHHHHcCCcEE
Confidence 4444 4678899999999999998655544322 235566777888644
No 327
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=36.96 E-value=2e+02 Score=26.48 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=32.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+.+++...+|..|++++..|+.+|++.+.+.+. ..+...++.+|++-+
T Consensus 142 ~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~------~~~~~~~~~~g~~~~ 189 (327)
T PRK10754 142 EQFLFHAAAGGVGLIACQWAKALGAKLIGTVGS------AQKAQRAKKAGAWQV 189 (327)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHCCCCEE
Confidence 455555567889999999999999986655432 223445566776433
No 328
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=36.87 E-value=1.9e+02 Score=29.98 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=37.5
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcC
Q 021613 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~ 234 (310)
.|+..|+|.-|.+.+..|+.+|-+++++ +. .+.++++.+.+||+.+.++.
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~lGA~V~a~--D~----~~~rle~aeslGA~~v~i~~ 216 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSLGAIVRAF--DT----RPEVAEQVESMGAEFLELDF 216 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEE--eC----CHHHHHHHHHcCCeEEEecc
Confidence 3556799999999999999999853333 22 35678899999999665543
No 329
>PLN02702 L-idonate 5-dehydrogenase
Probab=36.77 E-value=1.8e+02 Score=27.52 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=34.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
.++|. ++|.-|.++...++.+|.+.++.+... ..|.+.++.+|++.+.
T Consensus 184 ~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 184 NVLVM-GAGPIGLVTMLAARAFGAPRIVIVDVD-----DERLSVAKQLGADEIV 231 (364)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEE
Confidence 45554 678999999999999999865555432 3456677788887554
No 330
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=36.65 E-value=1.1e+02 Score=29.83 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHcCCeEEEEeC-CC
Q 021613 186 GQHGVATATVCARFGLQCIVYMG-AQ 210 (310)
Q Consensus 186 GNhg~AlA~aaa~~Gi~~~Ivmp-~~ 210 (310)
+|...+++.+++++|++++++.| ..
T Consensus 185 ~~v~~S~~~~~~~~g~~v~~~~P~~~ 210 (335)
T PRK04523 185 TAVANSALLIATRLGMDVTLLCPTPD 210 (335)
T ss_pred cHHHHHHHHHHHHcCCEEEEECCchh
Confidence 37899999999999999999999 64
No 331
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=36.63 E-value=3e+02 Score=24.24 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=26.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
.++++.++|.-|.++|....+.|.+++++-..
T Consensus 14 ~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 14 IILVTGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 47788888999999999998999977765443
No 332
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=36.59 E-value=1.7e+02 Score=25.16 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=38.7
Q ss_pred hhcCCCeEEEecCcchHHH-HHHHHHHHcCCeEEEEeCCCchhc---hHHHHHHHHHCCCEEE
Q 021613 172 KRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGAQDMER---QALNVFRMRLLGAEVR 230 (310)
Q Consensus 172 ~~~g~~~~Vv~aSsGNhg~-AlA~aaa~~Gi~~~Ivmp~~~~~~---~~~kv~~~~~~GA~Vv 230 (310)
.+.|.+++|++.-..|.++ +.|..|..+|++++|+--...... ...-+..|+..+++|+
T Consensus 110 ~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a~~~~~~h~~al~~l~~~~~~v~ 172 (179)
T cd01015 110 TARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVRECVGDRAPAPHEANLFDIDNKYGDVV 172 (179)
T ss_pred HHcCCCEEEEeeecccHhHHHHHHHHHHCCCeEEEeeccccCCCHHHHHHHHHHHHhhceeec
Confidence 4678888888877788766 778888889999988875432211 2223444544455553
No 333
>PRK08339 short chain dehydrogenase; Provisional
Probab=36.37 E-value=2.9e+02 Score=24.92 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=25.7
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
..+|+.+++.-|.++|....+.|.+++++-.
T Consensus 10 ~~lItGas~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 10 LAFTTASSKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 4677888889999999999999998777643
No 334
>PRK06953 short chain dehydrogenase; Provisional
Probab=36.27 E-value=2.7e+02 Score=24.19 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=35.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~ 234 (310)
..+++.++|.-|.++|-.-...|.+++++.... .+.+.++..+.+.+..+-
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~------~~~~~~~~~~~~~~~~D~ 53 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARDA------AALAALQALGAEALALDV 53 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECCH------HHHHHHHhccceEEEecC
Confidence 467788889999999998888899877764331 234455556766655554
No 335
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=36.13 E-value=49 Score=28.32 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=19.0
Q ss_pred cCcchHHHHHHHHHHHcCCe-EEEEeCC
Q 021613 183 TGAGQHGVATATVCARFGLQ-CIVYMGA 209 (310)
Q Consensus 183 aSsGNhg~AlA~aaa~~Gi~-~~Ivmp~ 209 (310)
-|+|-.|.++|....+.|++ ++|+=+.
T Consensus 3 IGaG~aGl~~a~~l~~~g~~~v~v~e~~ 30 (203)
T PF13738_consen 3 IGAGPAGLAAAAHLLERGIDPVVVLERN 30 (203)
T ss_dssp E--SHHHHHHHHHHHHTT---EEEEESS
T ss_pred ECcCHHHHHHHHHHHhCCCCcEEEEeCC
Confidence 38899999999999999999 6666544
No 336
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=35.97 E-value=49 Score=30.46 Aligned_cols=29 Identities=34% Similarity=0.446 Sum_probs=23.6
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
+..|+|=.|.++|.+.++.|++++||=..
T Consensus 5 ~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 5 AIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEECCCHHHHHHHHHHHhcccccccchhc
Confidence 34699999999999999999999988644
No 337
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=35.87 E-value=3.3e+02 Score=24.62 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=24.3
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 021613 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~ 210 (310)
|+..|+|.-|.-=|-.....|-+.+|+-|+.
T Consensus 15 VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~ 45 (210)
T COG1648 15 VLVVGGGSVALRKARLLLKAGADVTVVSPEF 45 (210)
T ss_pred EEEECCCHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 3446888888777777788888888888876
No 338
>PF09094 DUF1925: Domain of unknown function (DUF1925); InterPro: IPR015178 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). It is adjacent to the C-terminal domain (see IPR015179 from INTERPRO). The exact function of this domain is, as yet, unknown. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=35.80 E-value=24 Score=27.48 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=15.1
Q ss_pred CCc-cCCCccccccchhhhHHHHHHH
Q 021613 74 GRF-GRFGGKFVPETLMYALSELESA 98 (310)
Q Consensus 74 ~~~-g~~GG~~vPe~l~~~~~~i~~a 98 (310)
.|| |.|||.|.|.--...+..|-++
T Consensus 51 ~yWHG~FGGlYlp~LR~a~y~~LI~a 76 (80)
T PF09094_consen 51 AYWHGLFGGLYLPHLRHAAYRHLIKA 76 (80)
T ss_dssp GG--SSS-GGG-HHHHHHHHHHHHHH
T ss_pred chhcccccceecHHHHHHHHHHHHHH
Confidence 356 9999999998665555555443
No 339
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=35.53 E-value=1.4e+02 Score=26.96 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=35.1
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHC-CCEEE
Q 021613 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLL-GAEVR 230 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~-GA~Vv 230 (310)
|+..++|+.|.-+|...++.+.+++++.+.......+.-.+.++.. |.+++
T Consensus 144 v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~ 195 (300)
T TIGR01292 144 VAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFL 195 (300)
T ss_pred EEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEE
Confidence 3456889999999999999999999988764322123334455555 65554
No 340
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=35.50 E-value=1.7e+02 Score=26.92 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=36.1
Q ss_pred HhhhcC--CCeEEEecCcc---hHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCC
Q 021613 170 LAKRLG--KTRIIAETGAG---QHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (310)
Q Consensus 170 ~a~~~g--~~~~Vv~aSsG---Nhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA 227 (310)
.|...| .+.+|.+.|.| -+.+|||.||++-|=+.+.++|+... ...-.+.|..+|.
T Consensus 34 SAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~--~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 34 SALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQS--LSEYKKALGEAGL 94 (218)
T ss_pred HHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhh--HHHHHHHHhhccc
Confidence 344445 34444443555 37899999999999999999998542 2334445555564
No 341
>PRK06841 short chain dehydrogenase; Provisional
Probab=35.40 E-value=3.1e+02 Score=24.12 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=25.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.++|+.++|.-|.++|....+.|.+++++-.
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r 47 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDR 47 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 35777888889999999999999998766544
No 342
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=35.34 E-value=2.6e+02 Score=25.57 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=31.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHH-CCCEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGAEV 229 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~-~GA~V 229 (310)
+.+++...+|-.|.+++..++.+|.+.+++... ..+.+.++. +|++-
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~------~~~~~~~~~~~g~~~ 194 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGS------DEKCRWLVEELGFDA 194 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHhhcCCce
Confidence 345565557899999999999999986555432 224445555 77643
No 343
>PRK08267 short chain dehydrogenase; Provisional
Probab=35.19 E-value=3.2e+02 Score=24.22 Aligned_cols=31 Identities=29% Similarity=0.171 Sum_probs=26.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
.++|+.++|.-|.++|....+.|.+++++-.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r 33 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDI 33 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 4678888899999999999999988777654
No 344
>PRK12746 short chain dehydrogenase; Provisional
Probab=35.01 E-value=3.2e+02 Score=24.07 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=37.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
+.++|+.++|--|.++|....+.|.++++....... ........++..+.++..+..+
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~-~~~~~~~~~~~~~~~~~~~~~D 64 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQ-AADETIREIESNGGKAFLIEAD 64 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH-HHHHHHHHHHhcCCcEEEEEcC
Confidence 457888889999999999999999887765433221 1112223344456666665543
No 345
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=34.96 E-value=45 Score=33.11 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=22.3
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~ 210 (310)
|..++|-.|.+.|.+|++.|.++.++=+..
T Consensus 3 VVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 3 VVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 346999999999999999999999886543
No 346
>PRK06101 short chain dehydrogenase; Provisional
Probab=34.79 E-value=2.1e+02 Score=25.23 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=25.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
.++++.++|.-|.++|..-...|.+++++-.
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r 33 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGR 33 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEEC
Confidence 4678888899999999999899999776643
No 347
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=34.78 E-value=2.6e+02 Score=27.20 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=25.7
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~ 210 (310)
+..++|..|.-+|...+++|.+++++.+..
T Consensus 148 vViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 148 VIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred EEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 346889999999999999999999987643
No 348
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=34.73 E-value=1.4e+02 Score=28.54 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 186 GQHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 186 GNhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
.|...+++.+++++|++++++.|...
T Consensus 158 ~~v~~Sl~~~l~~~g~~v~~~~P~~~ 183 (304)
T TIGR00658 158 NNVCNSLMLAGAKLGMDVVVATPEGY 183 (304)
T ss_pred CchHHHHHHHHHHcCCEEEEECCchh
Confidence 58999999999999999999999864
No 349
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=34.73 E-value=58 Score=23.74 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=21.7
Q ss_pred CcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 184 GAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 184 SsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
++|=.|.+.|+..++.|.+++|+=-.
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecC
Confidence 78899999999999999999888533
No 350
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=34.73 E-value=2.6e+02 Score=25.75 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=22.1
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
|+..|+|.-|..=+..-...|-+++|+-|+-.
T Consensus 28 VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 28 VLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 33467787766655555567888888888764
No 351
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=34.70 E-value=2.9e+02 Score=23.61 Aligned_cols=94 Identities=16% Similarity=0.033 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhhcCCCeEEEecCcc--hHHHHHHHHHHHcCCeEEEEe-----------CCCchhchHHHHHHHHHCCC
Q 021613 161 INNAVGQALLAKRLGKTRIIAETGAG--QHGVATATVCARFGLQCIVYM-----------GAQDMERQALNVFRMRLLGA 227 (310)
Q Consensus 161 ~Rga~~~l~~a~~~g~~~~Vv~aSsG--Nhg~AlA~aaa~~Gi~~~Ivm-----------p~~~~~~~~~kv~~~~~~GA 227 (310)
..++..+.-.. ..+...+|+..++| |..-+++.+....++++.+++ +..... ......++.++-
T Consensus 44 e~aa~~aAg~~-~~~~~~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~~g--~~~~~~l~~~~i 120 (157)
T TIGR03845 44 EEGVGICAGAY-LAGKKPAILMQSSGLGNSINALASLNKTYGIPLPILASWRGVYKEKIPAQIPMG--RATPKLLDTLGI 120 (157)
T ss_pred HHHHHHHHHHH-HhcCCcEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccchh--hhhHHHHHHcCC
Confidence 33444444433 44554456666666 766666666668999999999 432211 111122344444
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHccCCceee
Q 021613 228 EVRAVHSGTATLKDATSEAIRDWVTNVETTHYI 260 (310)
Q Consensus 228 ~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi 260 (310)
....+... +++ ..+++|++...+.. .+.++
T Consensus 121 ~~~~i~~~-e~~-~~i~~A~~~a~~~~-gPv~i 150 (157)
T TIGR03845 121 PYTIPREP-EEA-KLIEKAISDAYENS-RPVAA 150 (157)
T ss_pred CeEEeCCH-HHH-HHHHHHHHHHHhCC-CCEEE
Confidence 45555432 345 55666665544432 34444
No 352
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=34.31 E-value=1.8e+02 Score=28.08 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=40.1
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHH-CCCEEEEEcC
Q 021613 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGAEVRAVHS 234 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~-~GA~Vv~v~~ 234 (310)
.|+..++|.-|...+..++.+|-..+|++... +.+++..+. .|++++....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~-----~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS-----PERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC-----HHHHHHHHHhCCCeEeecCc
Confidence 46678999999999999999999999988433 456777766 7788766654
No 353
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=34.29 E-value=4.5e+02 Score=25.68 Aligned_cols=63 Identities=10% Similarity=-0.028 Sum_probs=36.6
Q ss_pred CCeEEEEecCCC----CCCChHHHHHHHHHHHhhhcCCCeEEE--ecCcc-----h-----HHHHHHHHHHHcCCeEEE
Q 021613 143 GPHIYLKREDLN----HTGAHKINNAVGQALLAKRLGKTRIIA--ETGAG-----Q-----HGVATATVCARFGLQCIV 205 (310)
Q Consensus 143 g~~I~lK~E~ln----pTGSfK~Rga~~~l~~a~~~g~~~~Vv--~aSsG-----N-----hg~AlA~aaa~~Gi~~~I 205 (310)
+..+++..|.-. ..|-.-+.-....+.++++.|.+.+-+ -..+. | .-..++..|++.|++..+
T Consensus 83 ~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlll 161 (340)
T PRK12858 83 NCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFL 161 (340)
T ss_pred CCCeEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 566888887311 122222223344467788888764321 12222 2 245677899999999887
No 354
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.18 E-value=3.5e+02 Score=24.33 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=39.0
Q ss_pred eEEEecCc--chHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHH-HC-CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGA--GQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR-LL-GAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSs--GNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~-~~-GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
..||+.++ +.-|.++|....+.|.++++.-.... ...+++.+. .+ |.+++.+..+-.+. +.++.+.+...++
T Consensus 9 ~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~Dv~d~-~~v~~~~~~~~~~ 84 (257)
T PRK08594 9 TYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGER---LEKEVRELADTLEGQESLLLPCDVTSD-EEITACFETIKEE 84 (257)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCccc---chHHHHHHHHHcCCCceEEEecCCCCH-HHHHHHHHHHHHh
Confidence 45566654 67999999999999998776533211 122333332 22 55665554432222 3345555444433
No 355
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=33.83 E-value=1.3e+02 Score=27.44 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=24.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
+.+++...+|.-|++++..|+.+|.+.+++...
T Consensus 140 ~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~ 172 (323)
T cd05282 140 DWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR 172 (323)
T ss_pred CEEEEcccccHHHHHHHHHHHHCCCeEEEEecC
Confidence 345555566889999999999999997665443
No 356
>PRK05855 short chain dehydrogenase; Validated
Probab=33.65 E-value=4e+02 Score=26.59 Aligned_cols=74 Identities=16% Similarity=0.068 Sum_probs=44.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
...+|+.++|--|.++|...+..|.+++++-.... ....-...++..|.++..+..+-.+. +.+.++.+...++
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~-~~~~~~~~~~~~~ 389 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGAEVVASDIDEA--AAERTAELIRAAGAVAHAYRVDVSDA-DAMEAFAEWVRAE 389 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEcCCCCH-HHHHHHHHHHHHh
Confidence 44677788889999999999999999666543321 11222344566787776665543233 3345555544433
No 357
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=33.54 E-value=2.3e+02 Score=25.29 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=23.2
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~ 210 (310)
-.|+|.-|...|..-...|-+.+|+-|+.
T Consensus 15 VIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 15 IVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred EECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 46889999888888888888888887654
No 358
>PRK09126 hypothetical protein; Provisional
Probab=33.52 E-value=51 Score=31.65 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=24.1
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEe
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYM 207 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivm 207 (310)
+..++|-.|.++|.+.++.|++++|+=
T Consensus 7 iIvGgG~aGl~~A~~L~~~G~~v~v~E 33 (392)
T PRK09126 7 VVVGAGPAGLSFARSLAGSGLKVTLIE 33 (392)
T ss_pred EEECcCHHHHHHHHHHHhCCCcEEEEe
Confidence 346999999999999999999998885
No 359
>PRK06179 short chain dehydrogenase; Provisional
Probab=33.50 E-value=3.1e+02 Score=24.50 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=26.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
.++|+.++|.-|.++|....+.|.++++....
T Consensus 6 ~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 6 VALVTGASSGIGRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57788888999999999999999997766543
No 360
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=33.43 E-value=1.4e+02 Score=27.90 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=33.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.+++. ++|..|.++...|+.+|.+.++++.. ...|.+.++.+|++.+.
T Consensus 165 ~~vlV~-~~g~vg~~~~~la~~~G~~~v~~~~~-----~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 165 EDVLIT-GAGPIGIMAAAVAKHVGARHVVITDV-----NEYRLELARKMGATRAV 213 (341)
T ss_pred CeEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC-----CHHHHHHHHHhCCcEEe
Confidence 345664 57889999999999999964444422 23466777888986544
No 361
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=33.35 E-value=4.1e+02 Score=24.84 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=39.0
Q ss_pred eEEEecCcchHHHHHHHHHHHcC-CeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFG-LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~G-i~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~ 251 (310)
.++|+.+++--|.++|......| .+++++...... ...-.+.+...+.++..+..+-.+.+ .++.+.+...
T Consensus 5 ~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~-~v~~~~~~~~ 76 (314)
T TIGR01289 5 TVIITGASSGLGLYAAKALAATGEWHVIMACRDFLK--AEQAAKSLGMPKDSYTIMHLDLGSLD-SVRQFVQQFR 76 (314)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHH--HHHHHHHhcCCCCeEEEEEcCCCCHH-HHHHHHHHHH
Confidence 46777777788999998888889 777766543221 11111223334556655544322333 3444444443
No 362
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=33.20 E-value=1.9e+02 Score=26.60 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=30.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~ 228 (310)
.+++...+|..|.+++..|+.+|.+.+++.... .+.+.++.+|++
T Consensus 148 ~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~------~~~~~~~~~g~~ 192 (323)
T TIGR02823 148 PVLVTGATGGVGSLAVAILSKLGYEVVASTGKA------EEEDYLKELGAS 192 (323)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCH------HHHHHHHhcCCc
Confidence 566655569999999999999999866554322 233445566664
No 363
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=33.16 E-value=1.7e+02 Score=28.55 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=31.8
Q ss_pred EecCc---chHHHHHHHH-HHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEE
Q 021613 181 AETGA---GQHGVATATV-CARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (310)
Q Consensus 181 v~aSs---GNhg~AlA~a-aa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v 232 (310)
+-.+. +|.+.+++.+ ++.+|++++++-|+.-.- +..-++.++..|.++..+
T Consensus 163 a~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~-~~~~~~~~~~~g~~~~~~ 217 (338)
T PRK08192 163 AMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAM-PDYVISDIENAGHKITIT 217 (338)
T ss_pred EEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccC-CHHHHHHHHHcCCeEEEE
Confidence 33455 4789998876 556799999999986421 222234445555555444
No 364
>PRK00768 nadE NAD synthetase; Reviewed
Probab=33.12 E-value=3.3e+02 Score=25.73 Aligned_cols=66 Identities=11% Similarity=0.018 Sum_probs=38.1
Q ss_pred HHhhhcCCCeEEEecCcc-hHHHHHHHHHHH---cCC--------eEEEEeCCCchhchHHHHHHHHHCCC-EEEEEcC
Q 021613 169 LLAKRLGKTRIIAETGAG-QHGVATATVCAR---FGL--------QCIVYMGAQDMERQALNVFRMRLLGA-EVRAVHS 234 (310)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsG-Nhg~AlA~aaa~---~Gi--------~~~Ivmp~~~~~~~~~kv~~~~~~GA-~Vv~v~~ 234 (310)
....+.|.+..|+.-|+| ..++..+.+... .+. -..+.||....+.........+.+|. +...++-
T Consensus 31 ~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~lgi~~~~~i~I 109 (268)
T PRK00768 31 DYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFIQPDRVLTVNI 109 (268)
T ss_pred HHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhcCCCeeEEEEC
Confidence 344566888888888888 455554433333 332 24567785432222334456778888 6666653
No 365
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=32.93 E-value=53 Score=31.90 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=22.4
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
..++|..|.+.|+.|++.|.+++|+=-.
T Consensus 4 VIG~G~AGl~AA~~Aae~G~~V~lvek~ 31 (417)
T PF00890_consen 4 VIGGGLAGLAAAIEAAEAGAKVLLVEKG 31 (417)
T ss_dssp EE-SSHHHHHHHHHHHHTTT-EEEEESS
T ss_pred EECCCHHHHHHHHHHhhhcCeEEEEEee
Confidence 4689999999999999999998887543
No 366
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=32.91 E-value=1.4e+02 Score=27.58 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=32.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+.+++...+|-.|++++..++.+|.+.+++... ..+...++.+|++-+
T Consensus 141 ~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~v 188 (329)
T cd08250 141 ETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSS------DEKAEFLKSLGCDRP 188 (329)
T ss_pred CEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCc------HHHHHHHHHcCCceE
Confidence 456666667899999999999999986655432 223445566776443
No 367
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=32.82 E-value=2.9e+02 Score=26.53 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=34.3
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeCCCchh-------chHHHHHHHHHCCCEEE
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMGAQDME-------RQALNVFRMRLLGAEVR 230 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~-------~~~~kv~~~~~~GA~Vv 230 (310)
+..++|..|.-+|...++.|.+++++.+..... -...-.+.++..|.+++
T Consensus 145 vViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~ 201 (377)
T PRK04965 145 LVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLL 201 (377)
T ss_pred EEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEE
Confidence 346889999999999999999999998654210 01112345666776664
No 368
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=32.79 E-value=2e+02 Score=27.68 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=32.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~V 229 (310)
+.++|. ++|.-|.+++..++.+|++-++++... ..+.+.++.+|++-
T Consensus 192 ~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~~-----~~~~~~a~~lGa~~ 238 (373)
T cd08299 192 STCAVF-GLGGVGLSAIMGCKAAGASRIIAVDIN-----KDKFAKAKELGATE 238 (373)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCce
Confidence 345554 779999999999999999434444322 23556667788853
No 369
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=32.60 E-value=2.3e+02 Score=26.54 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=31.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+++++. ++|.-|.+++..|+.+|.+.++++... ..+...++.+|++-+.
T Consensus 164 ~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~~-----~~~~~~~~~~g~~~vi 212 (343)
T cd05285 164 DTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDID-----PSRLEFAKELGATHTV 212 (343)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECCC-----HHHHHHHHHcCCcEEe
Confidence 456665 567789999999999999844444222 2344555667775443
No 370
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=32.48 E-value=55 Score=32.74 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.0
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEe
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYM 207 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivm 207 (310)
.-++|-.|...|++++++|.++.++.
T Consensus 4 VVGgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 4 VVGGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 46999999999999999999999994
No 371
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=32.47 E-value=1.6e+02 Score=28.88 Aligned_cols=114 Identities=22% Similarity=0.243 Sum_probs=62.7
Q ss_pred cCCCCCCCCCCCCCCCccCCCccccccchhhhHHHHHHHHHHhcCChhHH------HHHHHHHhhhcCCCCCEEEccccc
Q 021613 60 KESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQ------EELSGILRDYVGRETPLYFAERLT 133 (310)
Q Consensus 60 ~~~~~~~~~~~~~~~~~g~~GG~~vPe~l~~~~~~i~~a~~~~~~d~~f~------~el~~~l~~~vg~~TPL~~~~~Ls 133 (310)
...-|+.|..-|..--||.||+..+|+....++..=.-+..-.+..|--. -.+++.+.-|. +--|...++.+-
T Consensus 60 aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~kgh~S~nl~LRK~f~LyA-NVRPc~SieG~K 138 (365)
T KOG0785|consen 60 AAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIGKGHRSLNLALRKEFGLYA-NVRPCKSIEGYK 138 (365)
T ss_pred hcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCccccccccHHHHHHHHhchhc-cceecccccCCc
Confidence 45567888888888999999999999975544433222333233222111 23444444443 235666666554
Q ss_pred hhhcCCCCCCCeEEEEecCC----------CCCC---ChHH-------HHHHHHHHHhhhcCCCeE
Q 021613 134 EHYRRPNGGGPHIYLKREDL----------NHTG---AHKI-------NNAVGQALLAKRLGKTRI 179 (310)
Q Consensus 134 ~~~~~~~~~g~~I~lK~E~l----------npTG---SfK~-------Rga~~~l~~a~~~g~~~~ 179 (310)
-.| .+.++-+=||+. .-.| |.|. |.+.+....|+..+++++
T Consensus 139 t~Y-----~~vD~V~IRENTEgeYsgiEh~vvpGVvqsiK~IT~~AS~Ria~~AF~yAr~~~R~~v 199 (365)
T KOG0785|consen 139 TPY-----DDVDLVIIRENTEGEYSGIEHQVVPGVVQSIKLITEAASRRIAEYAFEYARQNGRKRV 199 (365)
T ss_pred CCC-----CCceEEEEecCCccccccceeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCce
Confidence 444 245555555544 3334 3443 445555555655665543
No 372
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=32.02 E-value=1.7e+02 Score=28.47 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=25.5
Q ss_pred EecCcc--hHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 181 AETGAG--QHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 181 v~aSsG--Nhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
+-.|.+ |.+.++..+++++|++++++-|...
T Consensus 160 a~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~ 192 (334)
T PRK12562 160 VYAGDARNNMGNSMLEAAALTGLDLRLVAPQAC 192 (334)
T ss_pred EEECCCCCCHHHHHHHHHHHcCCEEEEECCccc
Confidence 334454 7999999999999999999999863
No 373
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=31.92 E-value=2.5e+02 Score=26.09 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=32.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~V 229 (310)
+.++|. ++|-.|.+++..++.+|.+.++..... ..+.+.++.+|++-
T Consensus 163 ~~VlI~-g~g~vg~~~~~la~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~ 209 (341)
T cd08262 163 EVALVI-GCGPIGLAVIAALKARGVGPIVASDFS-----PERRALALAMGADI 209 (341)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECCC-----HHHHHHHHHcCCcE
Confidence 345555 568899999999999999866655432 34556667788753
No 374
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=31.89 E-value=3.7e+02 Score=23.98 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=32.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+.+++...+|..|.+++..++.+|.+.++..+.. .+.+.++.+|++-+
T Consensus 146 ~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~~ 193 (325)
T cd08253 146 ETVLVHGGSGAVGHAAVQLARWAGARVIATASSA------EGAELVRQAGADAV 193 (325)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHHcCCCEE
Confidence 3466666678999999999999998866554432 23444555676543
No 375
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=31.86 E-value=1.8e+02 Score=28.94 Aligned_cols=64 Identities=19% Similarity=0.127 Sum_probs=47.3
Q ss_pred hhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCC
Q 021613 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTAT 238 (310)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~ 238 (310)
+...|.+.. ++.++|-.+..+|+.+-..|=.-.|++|.-+ -......+-..||+.++|+.+.++
T Consensus 44 ae~~G~k~a-va~~sgT~AL~laL~al~ig~GDeVI~ps~T---fvATan~i~~~Ga~PVFvDid~~T 107 (374)
T COG0399 44 AEYLGVKYA-VAVSSGTAALHLALLALAIGPGDEVIVPSFT---FVATANAVLLVGAKPVFVDIDPDT 107 (374)
T ss_pred HHHhCCCeE-EEecChHHHHHHHHHhcCCCCCCEEEecCCc---hHHHHHHHHHcCCeEEEEecCCcc
Confidence 345687765 4678898888888875556666788888876 345566778889999999986443
No 376
>PRK06847 hypothetical protein; Provisional
Probab=31.82 E-value=68 Score=30.47 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=24.1
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEe
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYM 207 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivm 207 (310)
+..|+|-.|.++|...++.|++++|+=
T Consensus 8 ~IVGaG~aGl~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 8 LIVGGGIGGLSAAIALRRAGIAVDLVE 34 (375)
T ss_pred EEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 446999999999999999999998884
No 377
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=31.66 E-value=2.8e+02 Score=25.66 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=34.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
+.+++-..+|.-|.+++..|+.+|.+++++...... ...+.+.++.+|++-+.
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~--~~~~~~~~~~~g~~~~~ 200 (341)
T cd08290 148 DWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPD--LEELKERLKALGADHVL 200 (341)
T ss_pred CEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCc--chhHHHHHHhcCCCEEE
Confidence 345554456899999999999999997776653311 01234455667775444
No 378
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=31.66 E-value=2.3e+02 Score=29.73 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhhhcCCCCCEEEccccch--------hhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCe
Q 021613 107 DFQEELSGILRDYVGRETPLYFAERLTE--------HYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTR 178 (310)
Q Consensus 107 ~f~~el~~~l~~~vg~~TPL~~~~~Ls~--------~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~ 178 (310)
+|.+|+-..++... |+=+++++.++. ++ ..++-+=.+|.|-||+.=.=+.++.+......=.+.
T Consensus 227 ~f~defv~av~~~~--P~~~Iq~EDf~~~naf~iL~ky------r~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~ 298 (559)
T PTZ00317 227 ELLDEFMEAVSSRW--PNAVVQFEDFSNNHCFDLLERY------QNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQ 298 (559)
T ss_pred HHHHHHHHHHHHhC--CCeEEehhhcCCccHHHHHHHh------ccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhc
Confidence 44555555565554 556888877642 23 234666678888888876666666555432211234
Q ss_pred EEEecCcchHHHHHHHHHH----HcCC
Q 021613 179 IIAETGAGQHGVATATVCA----RFGL 201 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa----~~Gi 201 (310)
.|+..|+|..|.++|-... +.|+
T Consensus 299 riv~~GAGsAgiGia~ll~~~m~~~Gl 325 (559)
T PTZ00317 299 RIVFFGAGSAAIGVANNIADLAAEYGV 325 (559)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHcCC
Confidence 4667899999999887666 4798
No 379
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=31.54 E-value=87 Score=32.14 Aligned_cols=42 Identities=29% Similarity=0.409 Sum_probs=32.4
Q ss_pred CcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcC
Q 021613 184 GAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (310)
Q Consensus 184 SsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~ 234 (310)
|||-.|.++|.++...|-+++++....... .-.|.+++.|+.
T Consensus 280 SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~---------~p~~v~~i~V~t 321 (475)
T PRK13982 280 SSGKQGFAIAAAAAAAGAEVTLISGPVDLA---------DPQGVKVIHVES 321 (475)
T ss_pred CchHHHHHHHHHHHHCCCcEEEEeCCcCCC---------CCCCceEEEecC
Confidence 899999999999999999999998543311 125677777764
No 380
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=31.42 E-value=1.9e+02 Score=29.21 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=23.4
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEE
Q 021613 179 IIAETGAGQHGVATATVCARFGLQCIVY 206 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa~~Gi~~~Iv 206 (310)
.|+..|.|+-|..+|..++.+|.+++++
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~Ga~ViV~ 241 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGLGARVIVT 241 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 3455789999999999999999986655
No 381
>PRK12742 oxidoreductase; Provisional
Probab=31.26 E-value=3.5e+02 Score=23.44 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=34.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHH-HHHCCCEEEEEcC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFR-MRLLGAEVRAVHS 234 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~-~~~~GA~Vv~v~~ 234 (310)
+.++|+.++|.-|.++|......|.++++...... .+.+. ....+.+.+.++.
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~-----~~~~~l~~~~~~~~~~~D~ 60 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSK-----DAAERLAQETGATAVQTDS 60 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCH-----HHHHHHHHHhCCeEEecCC
Confidence 35778888899999999999999998766543221 12222 2345666655543
No 382
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=31.24 E-value=1.5e+02 Score=28.87 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=25.9
Q ss_pred EEecCcc--hHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 180 IAETGAG--QHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 180 Vv~aSsG--Nhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
|+-.|.+ |.+.++..+++++|++.+++-|...
T Consensus 159 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 192 (336)
T PRK03515 159 LAYAGDARNNMGNSLLEAAALTGLDLRLVAPKAC 192 (336)
T ss_pred EEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchh
Confidence 3334554 6899999999999999999999864
No 383
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.20 E-value=3.7e+02 Score=23.77 Aligned_cols=75 Identities=9% Similarity=0.003 Sum_probs=42.5
Q ss_pred eEEEecCc--chHHHHHHHHHHHcCCeEEEEeCCCc---------hhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHH
Q 021613 178 RIIAETGA--GQHGVATATVCARFGLQCIVYMGAQD---------MERQALNVFRMRLLGAEVRAVHSGTATLKDATSEA 246 (310)
Q Consensus 178 ~~Vv~aSs--GNhg~AlA~aaa~~Gi~~~Ivmp~~~---------~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a 246 (310)
.++|+.++ |.-|.++|......|.+++++..... ......-...++.+|.++..+..+-.+. +.+..+
T Consensus 7 ~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~ 85 (256)
T PRK12748 7 IALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQP-YAPNRV 85 (256)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCH-HHHHHH
Confidence 35666655 47999999999899988776654310 0001111234556788887777643333 334455
Q ss_pred HHHHHHc
Q 021613 247 IRDWVTN 253 (310)
Q Consensus 247 ~~~~~~~ 253 (310)
++...++
T Consensus 86 ~~~~~~~ 92 (256)
T PRK12748 86 FYAVSER 92 (256)
T ss_pred HHHHHHh
Confidence 5544444
No 384
>PLN02263 serine decarboxylase
Probab=31.15 E-value=4.9e+02 Score=26.70 Aligned_cols=53 Identities=17% Similarity=0.079 Sum_probs=36.0
Q ss_pred EEEecCcchHHHHHHHHHHHc-CCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 179 IIAETGAGQHGVATATVCARF-GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa~~-Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
+++ +|+|.-+.-+|..++|- .-+-++|+|+.+- ..-.+.++.+|.+++.|+.+
T Consensus 155 G~v-tsGGTEaNL~Al~aARe~~~~~vvy~S~~aH---~Sv~KAa~llgi~~~~Vp~d 208 (470)
T PLN02263 155 GYI-TNCGTEGNLHGILVGREVFPDGILYASRESH---YSVFKAARMYRMECVKVDTL 208 (470)
T ss_pred EEE-eCcHHHHHHHHHHHHHhhcCCcEEEEcCCcc---HHHHHHHHhcCCcceEeccC
Confidence 554 57787777777777764 3345788898763 22335677799999888864
No 385
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=30.87 E-value=54 Score=27.59 Aligned_cols=29 Identities=28% Similarity=0.261 Sum_probs=24.8
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~ 210 (310)
-.|+|.-+.+++..++.+|++++++=|..
T Consensus 3 I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 3 IFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred EEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 46899999999999999999999998774
No 386
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=30.86 E-value=3.1e+02 Score=25.56 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=32.8
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+++++. ++|-.|.+++..|+.+|.+.+++... . +.|.+.++.+|++.+
T Consensus 163 ~~vlI~-~~g~vg~~a~~la~~~G~~~v~~~~~-~----~~~~~~~~~~g~~~~ 210 (340)
T TIGR00692 163 KSVLVT-GAGPIGLMAIAVAKASGAYPVIVSDP-N----EYRLELAKKMGATYV 210 (340)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC-C----HHHHHHHHHhCCcEE
Confidence 456664 46889999999999999984555532 2 345666777887543
No 387
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=30.81 E-value=2.1e+02 Score=26.76 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=23.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~ 210 (310)
++++.+++|- |..+|-.....|+++++.+...
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~ 33 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTS 33 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhCCCeEEEEEccC
Confidence 4666677776 8888888878888877766443
No 388
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=30.76 E-value=64 Score=30.66 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.2
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
.-++|-.|.++|+..++.|.+++|+=.
T Consensus 5 IIGaGi~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 5 VVGAGIMGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred EECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 358999999999999999999887643
No 389
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=30.61 E-value=2.3e+02 Score=27.11 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=32.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~V 229 (310)
+.+++ .+.|.-|.+++..|+.+|...++++... ..|.+.++.+|+..
T Consensus 178 ~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~~~-----~~~~~~~~~~g~~~ 224 (375)
T cd08282 178 DTVAV-FGAGPVGLMAAYSAILRGASRVYVVDHV-----PERLDLAESIGAIP 224 (375)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHcCCeE
Confidence 34555 5678999999999999998544444332 34667778888854
No 390
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=30.53 E-value=1.8e+02 Score=28.28 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=25.5
Q ss_pred ecCcc--hHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 182 ETGAG--QHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 182 ~aSsG--Nhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
-.|.+ |.+.+++.+++++|++++++.|...
T Consensus 160 ~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 191 (331)
T PRK02102 160 YVGDGRNNMANSLMVGGAKLGMDVRICAPKEL 191 (331)
T ss_pred EECCCcccHHHHHHHHHHHcCCEEEEECCccc
Confidence 34555 7999999999999999999999864
No 391
>PRK06914 short chain dehydrogenase; Provisional
Probab=30.53 E-value=4e+02 Score=23.90 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=26.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
.++|+.++|--|.++|......|.+++++...
T Consensus 5 ~~lItGasg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 5 IAIVTGASSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred EEEEECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence 46788888999999999988999988776543
No 392
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=30.41 E-value=2.2e+02 Score=25.63 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=31.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~ 228 (310)
+.+++...+|..|.+++..|+.+|.+.+++.+. .+.+.++.+|++
T Consensus 145 ~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-------~~~~~~~~~g~~ 189 (319)
T cd08267 145 QRVLINGASGGVGTFAVQIAKALGAHVTGVCST-------RNAELVRSLGAD 189 (319)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-------HHHHHHHHcCCC
Confidence 345555556899999999999999986665432 233455667764
No 393
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=30.37 E-value=2.9e+02 Score=27.04 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=35.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCch-------hchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDM-------ERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~-------~~~~~kv~~~~~~GA~Vv 230 (310)
++++| .++|..|..+|...++.|.+++++.+.... +-...-.+.++..|.+++
T Consensus 138 ~~vvV-iGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 197 (427)
T TIGR03385 138 ENVVI-IGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLR 197 (427)
T ss_pred CeEEE-ECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEE
Confidence 34443 588999999999999999999998865421 001112345666776654
No 394
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.21 E-value=2.1e+02 Score=28.56 Aligned_cols=49 Identities=29% Similarity=0.344 Sum_probs=33.2
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+..|+|..|.++|.+.++.|.+++++-..... ......+.++..|.+++
T Consensus 20 ~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~-~~~~~~~~l~~~gv~~~ 68 (480)
T PRK01438 20 VVAGLGVSGFAAADALLELGARVTVVDDGDDE-RHRALAAILEALGATVR 68 (480)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEeCCchh-hhHHHHHHHHHcCCEEE
Confidence 44688999999999999999998877433221 11223355777776664
No 395
>PLN02527 aspartate carbamoyltransferase
Probab=30.16 E-value=1.9e+02 Score=27.76 Aligned_cols=25 Identities=8% Similarity=0.006 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHc-CCeEEEEeCCCc
Q 021613 187 QHGVATATVCARF-GLQCIVYMGAQD 211 (310)
Q Consensus 187 Nhg~AlA~aaa~~-Gi~~~Ivmp~~~ 211 (310)
|.+.+++.+++++ |++++++.|+..
T Consensus 164 rv~~Sl~~~~~~~~g~~v~~~~P~~~ 189 (306)
T PLN02527 164 RTVRSLAYLLAKYEDVKIYFVAPDVV 189 (306)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCcc
Confidence 5899999998887 999999999863
No 396
>PLN02583 cinnamoyl-CoA reductase
Probab=30.12 E-value=3.9e+02 Score=24.66 Aligned_cols=33 Identities=9% Similarity=0.012 Sum_probs=28.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
+.++|+.++|-.|.+++....+.|.+++++...
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 457888888999999999999999998887753
No 397
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=30.05 E-value=2.9e+02 Score=28.23 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=31.9
Q ss_pred CeEEEecCcch-H--HHHHHHHHHHcCCeEEEEeCCCch-hchHHHHHHHHHCCCEE
Q 021613 177 TRIIAETGAGQ-H--GVATATVCARFGLQCIVYMGAQDM-ERQALNVFRMRLLGAEV 229 (310)
Q Consensus 177 ~~~Vv~aSsGN-h--g~AlA~aaa~~Gi~~~Ivmp~~~~-~~~~~kv~~~~~~GA~V 229 (310)
++++|.+|.|| - |..+|-.-...|++++|+++.... .....+..+++.+|..+
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPKRTDKPLYNGLVTQLESLSVPF 116 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEECCCCCHHHHHHHHHHHHcCCce
Confidence 35777788886 3 345555555689999999865321 11223445666666444
No 398
>PRK12747 short chain dehydrogenase; Provisional
Probab=29.82 E-value=3.9e+02 Score=23.54 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=36.3
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~ 234 (310)
.++|+.++|--|.++|...++.|.++++....... ........++..|.++..+..
T Consensus 6 ~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 61 (252)
T PRK12747 6 VALVTGASRGIGRAIAKRLANDGALVAIHYGNRKE-EAEETVYEIQSNGGSAFSIGA 61 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHH-HHHHHHHHHHhcCCceEEEec
Confidence 46778888899999999999999887765322211 112223445556766655544
No 399
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=29.80 E-value=2.2e+02 Score=27.65 Aligned_cols=12 Identities=42% Similarity=0.465 Sum_probs=5.1
Q ss_pred HHHCCCEEEEEc
Q 021613 222 MRLLGAEVRAVH 233 (310)
Q Consensus 222 ~~~~GA~Vv~v~ 233 (310)
++.+|++++.++
T Consensus 90 ~~~~G~~~v~vd 101 (379)
T PRK11658 90 IVLLGATPVMVD 101 (379)
T ss_pred HHHcCCEEEEEe
Confidence 333444444443
No 400
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=29.63 E-value=6.2e+02 Score=25.83 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHH-HCCCEEEEEcCCCC
Q 021613 159 HKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR-LLGAEVRAVHSGTA 237 (310)
Q Consensus 159 fK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~-~~GA~Vv~v~~~~~ 237 (310)
..+.-+...+..|...+.+.+|+.+.+|+++..+|.+ |-..+.+++.|.... .+++. .||..-+.++....
T Consensus 357 ~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~vSr~--rp~~PIiAvT~~~~v------~R~L~L~wGV~Pil~~~~~~ 428 (473)
T TIGR01064 357 ITEAIALSAVEAAEKLDAKAIVVLTESGRTARLLSKY--RPNAPIIAVTPNERV------ARQLALYWGVFPFLVDEEPS 428 (473)
T ss_pred hHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHHHHhh--CCCCCEEEEcCCHHH------HHHhhccCCcEEEEeCCCCC
Confidence 3445566666677778888888888899998887655 677888888876542 12333 46988877764223
Q ss_pred CHHHHHHHHHHHHH
Q 021613 238 TLKDATSEAIRDWV 251 (310)
Q Consensus 238 ~~~da~~~a~~~~~ 251 (310)
+.++....+.+...
T Consensus 429 ~~~~~i~~a~~~l~ 442 (473)
T TIGR01064 429 DTEARVNKALELLK 442 (473)
T ss_pred CHHHHHHHHHHHHH
Confidence 44555555555443
No 401
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=29.39 E-value=3.7e+02 Score=24.86 Aligned_cols=45 Identities=27% Similarity=0.291 Sum_probs=31.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~ 228 (310)
+.+++. ++|..|.+++..|+.+|++++++... ..+...++.+|++
T Consensus 161 ~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~s------~~~~~~~~~~g~~ 205 (337)
T cd08261 161 DTVLVV-GAGPIGLGVIQVAKARGARVIVVDID------DERLEFARELGAD 205 (337)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCeEEEECCC------HHHHHHHHHhCCC
Confidence 355555 57889999999999999997665332 2344555667764
No 402
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=29.38 E-value=2.2e+02 Score=24.33 Aligned_cols=31 Identities=16% Similarity=0.017 Sum_probs=24.5
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
+-.|+|+-|...|..--..|-+++|+-|+..
T Consensus 17 lVvGGG~va~rka~~Ll~~ga~V~VIsp~~~ 47 (157)
T PRK06719 17 VIIGGGKIAYRKASGLKDTGAFVTVVSPEIC 47 (157)
T ss_pred EEECCCHHHHHHHHHHHhCCCEEEEEcCccC
Confidence 3468899998888888888999998866643
No 403
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=29.25 E-value=4e+02 Score=24.48 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=42.7
Q ss_pred hhhcCCCeEEEecCcc-hHHHHHHHHHHHcC-CeE-EEEeCCCch--hchHHHHHHHHHCCCEEEEEcCC
Q 021613 171 AKRLGKTRIIAETGAG-QHGVATATVCARFG-LQC-IVYMGAQDM--ERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 171 a~~~g~~~~Vv~aSsG-Nhg~AlA~aaa~~G-i~~-~Ivmp~~~~--~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
..+.|.+..|+.-|+| ...+..+.+...+| -++ .|+||.... .....-....+.+|.+...++-.
T Consensus 13 ~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~ 82 (242)
T PF02540_consen 13 VKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDID 82 (242)
T ss_dssp HHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESH
T ss_pred HHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHHHHHHhCCCeeccchH
Confidence 3456778888888998 67777677776786 344 567884322 11223344567899999888753
No 404
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=29.10 E-value=2.1e+02 Score=27.96 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=24.7
Q ss_pred cCc-chHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 183 TGA-GQHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 183 aSs-GNhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
.+. .|.+.+++.+++++|++++++-|..-
T Consensus 160 vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 189 (338)
T PRK02255 160 VGDATQVCVSLMFIATKMGMDFVHFGPKGY 189 (338)
T ss_pred ECCCchHHHHHHHHHHhCCCEEEEECCCcc
Confidence 344 48999999999999999999999863
No 405
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=29.01 E-value=1.8e+02 Score=28.93 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=34.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC------CchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA------QDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~------~~~~~~~~kv~~~~~~GA~Vv 230 (310)
++++ ..++|..|.-+|...+++|.+++++... .+.+-...-.+.++..|.+++
T Consensus 173 ~~vv-VIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~ 231 (466)
T PRK07818 173 KSIV-IAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKIL 231 (466)
T ss_pred CeEE-EECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEE
Confidence 3444 4688999999999999999999987532 221111222345566776654
No 406
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=29.01 E-value=4.7e+02 Score=24.18 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=29.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~V 229 (310)
+.+++. ++|-.|.+++..|+.+|++.+++.... ..+...++.+|++-
T Consensus 167 ~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~~s-----~~~~~~~~~~g~~~ 213 (343)
T cd08235 167 DTVLVI-GAGPIGLLHAMLAKASGARKVIVSDLN-----EFRLEFAKKLGADY 213 (343)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECCC-----HHHHHHHHHhCCcE
Confidence 355555 577899999999999999944433222 22344455667643
No 407
>PRK06057 short chain dehydrogenase; Provisional
Probab=28.99 E-value=4.1e+02 Score=23.51 Aligned_cols=32 Identities=25% Similarity=0.134 Sum_probs=26.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.++|+.++|.-|.++|....+.|.+++++..
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r 39 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDI 39 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 35778888899999999999999998777643
No 408
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=28.94 E-value=69 Score=30.90 Aligned_cols=28 Identities=39% Similarity=0.399 Sum_probs=24.8
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+-.|+|-.|.++|.+-++.|++++||=.
T Consensus 7 ~IvGgG~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 7 AVVGGGMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred EEECcCHHHHHHHHHHHhCCCcEEEEcC
Confidence 3469999999999999999999999863
No 409
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=28.92 E-value=77 Score=28.50 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=24.1
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
-.++|=.|.++|...++.|++++|+=..
T Consensus 5 IiGaG~aGl~~A~~l~~~g~~v~vie~~ 32 (295)
T TIGR02032 5 VVGAGPAGASAAYRLADKGLRVLLLEKK 32 (295)
T ss_pred EECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3689999999999999999998887544
No 410
>PRK06753 hypothetical protein; Provisional
Probab=28.70 E-value=71 Score=30.41 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.0
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEe
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYM 207 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivm 207 (310)
+-.|+|-.|.++|.+.++.|++++|+=
T Consensus 4 ~IvGgG~aGl~~A~~L~~~g~~v~v~E 30 (373)
T PRK06753 4 AIIGAGIGGLTAAALLQEQGHEVKVFE 30 (373)
T ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEe
Confidence 346999999999999999999998875
No 411
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=28.57 E-value=69 Score=30.34 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=24.4
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
-.|+|-.|.++|++-++.|++++|+=..
T Consensus 4 IvGaG~aGl~~A~~L~~~G~~v~v~Er~ 31 (385)
T TIGR01988 4 IVGGGMVGLALALALARSGLKIALIEAT 31 (385)
T ss_pred EECCCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 3699999999999999999999887544
No 412
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=28.57 E-value=2.2e+02 Score=26.42 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=29.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~ 228 (310)
+.+++. ++|..|.+++..|+.+|++.++++... ..+...++.+|++
T Consensus 167 ~~VLI~-g~g~vG~~~~~lak~~G~~~v~~~~~s-----~~~~~~~~~~g~~ 212 (339)
T cd08232 167 KRVLVT-GAGPIGALVVAAARRAGAAEIVATDLA-----DAPLAVARAMGAD 212 (339)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECCC-----HHHHHHHHHcCCC
Confidence 456664 468889999999999999434443222 2244456667764
No 413
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=28.56 E-value=2.7e+02 Score=24.57 Aligned_cols=61 Identities=20% Similarity=0.085 Sum_probs=40.2
Q ss_pred hhhcCCCeEEEecCcchHHH-HHHHHHHHcCCeEEEEeCCCch---hchHHHHHHHHHCCCEEEE
Q 021613 171 AKRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGAQDM---ERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~-AlA~aaa~~Gi~~~Ivmp~~~~---~~~~~kv~~~~~~GA~Vv~ 231 (310)
+++.|.+.+|++.-..|.++ +.|.-|..+|++++|+-..... +....-+..|+..+++|+.
T Consensus 137 Lr~~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~v~vv~Da~as~~~~~h~~al~~l~~~~a~v~~ 201 (203)
T cd01013 137 LKESGRDQLIITGVYAHIGCLSTAVDAFMRDIQPFVVADAIADFSLEEHRMALKYAATRCAMVVS 201 (203)
T ss_pred HHHcCCCEEEEEEeccChhHHHHHHHHHHCCCeEEEeccccCCCCHHHHHHHHHHHHhheeEeee
Confidence 34678888888777777654 6677788899998877654322 1133455666667777654
No 414
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=28.50 E-value=5.6e+02 Score=26.34 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHH-HCCCEEEEEcCC--
Q 021613 159 HKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR-LLGAEVRAVHSG-- 235 (310)
Q Consensus 159 fK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~-~~GA~Vv~v~~~-- 235 (310)
+++.-+...+..|.+.+.+.+|+.+.+|.++..++.+ +...+.+++.+.... .+++. .+|-.-+.++..
T Consensus 359 ~~~aia~sAv~~A~~l~akaIVv~T~SG~TA~~lS~~--RP~~pIiavT~~~~~------~r~l~l~~GV~p~~~~~~~~ 430 (480)
T cd00288 359 TTEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKY--RPNAPIIAVTRNEQT------ARQLHLYRGVYPVLFEEPKP 430 (480)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhh--CCCCCEEEEcCCHHH------hhheeeccCcEEEEeccccc
Confidence 4555566666677778888899989999998766544 566888888776432 12233 468887776542
Q ss_pred --CCCHHHHHHHHHHHHHH
Q 021613 236 --TATLKDATSEAIRDWVT 252 (310)
Q Consensus 236 --~~~~~da~~~a~~~~~~ 252 (310)
+.+.++.+..+.+...+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~ 449 (480)
T cd00288 431 GWQEDTDARLKAAVNVAKE 449 (480)
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 02455555665554443
No 415
>PF09338 Gly_reductase: Glycine/sarcosine/betaine reductase component B subunits; InterPro: IPR015417 This is a family of glycine reductase, sarcosine reductase and betaine reductases. These enzymes catalyse the following reactions: sarcosine reductase: Acetyl phosphate + methylamine + thioredoxin disulphide = N-methylglycine + phosphate + thioredoxin. glycine reductase: Acetyl phosphate + NH3 + thioredoxin disulphide = glycine + phosphate + thioredoxin. betaine reductase: Acetyl phosphate + trimethylamine + thioredoxin disulphide = N,N,N-trimethylglycine + phosphate + thioredoxin. ; GO: 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process
Probab=28.45 E-value=1.8e+02 Score=29.52 Aligned_cols=58 Identities=26% Similarity=0.198 Sum_probs=42.9
Q ss_pred CCCCCCChHHHHHHHHHHHhhhcCCCeEEEec-CcchHHHHHHHHHHH---cCCeEEEEeCC
Q 021613 152 DLNHTGAHKINNAVGQALLAKRLGKTRIIAET-GAGQHGVATATVCAR---FGLQCIVYMGA 209 (310)
Q Consensus 152 ~lnpTGSfK~Rga~~~l~~a~~~g~~~~Vv~a-SsGNhg~AlA~aaa~---~Gi~~~Ivmp~ 209 (310)
+.+..-..|.|-+......|+.+|.+..|++. +-||.=.=++..+.. .||+++.+..+
T Consensus 280 ~~~~~~~~K~r~s~~~~~la~~LgaDGaIvs~eG~GN~d~D~~~~~~~~e~~GIktV~it~e 341 (428)
T PF09338_consen 280 NENVTLADKERVSQRAAKLAEMLGADGAIVSEEGFGNPDVDFAMNIEEIEKRGIKTVGITDE 341 (428)
T ss_pred CCccchHHHHHHHHHHHHHHHHhCCCEEEEEecCCCchhHHHHHHHHHHHHCCCCEEEecce
Confidence 44446678999999999999999987655544 447866666666655 79999998754
No 416
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=28.36 E-value=1.8e+02 Score=29.88 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=38.4
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
++-.+.|+.|+.+|-.-+..|++++++=.+ +.+++..+.+|.+++.-+..
T Consensus 420 iiI~G~G~~G~~la~~L~~~g~~vvvId~d------~~~~~~~~~~g~~~i~GD~~ 469 (558)
T PRK10669 420 ALLVGYGRVGSLLGEKLLAAGIPLVVIETS------RTRVDELRERGIRAVLGNAA 469 (558)
T ss_pred EEEECCChHHHHHHHHHHHCCCCEEEEECC------HHHHHHHHHCCCeEEEcCCC
Confidence 445799999999999999999998777432 34567777788887776653
No 417
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=28.30 E-value=2.2e+02 Score=27.12 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=31.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~ 228 (310)
+.++|- ++|..|.+++..|+.+|.+.++.+... ..+.+.++.+|++
T Consensus 185 ~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~ 230 (365)
T cd05279 185 STCAVF-GLGGVGLSVIMGCKAAGASRIIAVDIN-----KDKFEKAKQLGAT 230 (365)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHhCCC
Confidence 345554 679999999999999999855554322 2345556677774
No 418
>PRK06125 short chain dehydrogenase; Provisional
Probab=28.25 E-value=4.2e+02 Score=23.46 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=25.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.++++.++|.-|.++|......|.+++++-.
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r 39 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVAR 39 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 35677888889999999999999997666643
No 419
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=28.24 E-value=2.7e+02 Score=24.77 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=31.9
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
.+++...+|..|++++..++.+|.+.+++... ..+.+.++.+|++-+.
T Consensus 139 ~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~------~~~~~~~~~~g~~~~~ 186 (320)
T cd05286 139 TVLVHAAAGGVGLLLTQWAKALGATVIGTVSS------EEKAELARAAGADHVI 186 (320)
T ss_pred EEEEEcCCchHHHHHHHHHHHcCCEEEEEcCC------HHHHHHHHHCCCCEEE
Confidence 45555557899999999999999986555322 2344555667764443
No 420
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=28.15 E-value=2.3e+02 Score=26.29 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=29.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCe-EEEEeCCCchhchHHHHHHHHHCCCE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQ-CIVYMGAQDMERQALNVFRMRLLGAE 228 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~-~~Ivmp~~~~~~~~~kv~~~~~~GA~ 228 (310)
+.+++. ++|..|.+++..|+.+|++ +++.... ..+.+.++.+|++
T Consensus 161 ~~vlI~-g~g~~g~~~~~lA~~~G~~~v~~~~~~------~~~~~~l~~~g~~ 206 (343)
T cd08236 161 DTVVVI-GAGTIGLLAIQWLKILGAKRVIAVDID------DEKLAVARELGAD 206 (343)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcCC------HHHHHHHHHcCCC
Confidence 346665 5688999999999999998 5444322 1233445556663
No 421
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=28.11 E-value=4e+02 Score=23.15 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=44.5
Q ss_pred HHHHhhhcCCCeEEEecCcch-HHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 167 QALLAKRLGKTRIIAETGAGQ-HGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 167 ~l~~a~~~g~~~~Vv~aSsGN-hg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
.+..+.+.|.+.+++-+.+++ +-..+...++++|+++.+-++.... ....+..+..+|++++.+..+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t--~~~~~~~~~~~g~d~v~~~pg 135 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKD--KVKRAKELKELGADYIGVHTG 135 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCC--hHHHHHHHHHcCCCEEEEcCC
Confidence 466667789886654444443 4456777899999999987644221 234455566779999988653
No 422
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=28.06 E-value=1.6e+02 Score=28.74 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=29.0
Q ss_pred cCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 174 LGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 174 ~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
.|.+.++ ..++|..|..++..+...+=.-.|++|..+. ......+...|++++.++.+
T Consensus 44 ~g~~~~v-~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~---~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 44 TGTKKAL-LTPSCTAALEMAALLLDIQPGDEVIMPSYTF---VSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred hCCCeEE-EeCCHHHHHHHHHHHcCCCCcCEEEECCCCc---HHHHHHHHHcCCEEEEEecC
Confidence 3555443 4455655555444332222223455555432 23344556677777777654
No 423
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=28.01 E-value=2.8e+02 Score=23.10 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHH
Q 021613 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEA 246 (310)
Q Consensus 189 g~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a 246 (310)
|..+|-.....|++++|.---+ +.-...++..|-+|+..+. .+.+|++.+.
T Consensus 54 G~~~a~~l~~~gvdvvi~~~iG-----~~a~~~l~~~GIkv~~~~~--~~V~e~i~~~ 104 (121)
T COG1433 54 GIRIAELLVDEGVDVVIASNIG-----PNAYNALKAAGIKVYVAPG--GTVEEAIKAF 104 (121)
T ss_pred hHHHHHHHHHcCCCEEEECccC-----HHHHHHHHHcCcEEEecCC--CCHHHHHHHH
Confidence 3455666666777766653222 2334678889999999887 4677765543
No 424
>PRK13529 malate dehydrogenase; Provisional
Probab=27.96 E-value=2.7e+02 Score=29.31 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhhhcCCCCCEEEccccch--------hhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCe
Q 021613 107 DFQEELSGILRDYVGRETPLYFAERLTE--------HYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTR 178 (310)
Q Consensus 107 ~f~~el~~~l~~~vg~~TPL~~~~~Ls~--------~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~ 178 (310)
+|.+|+-..++... |+=+++++.++. ++ ..++-+=.||.|-||+.=.=+.++.+......=.+.
T Consensus 225 ~f~defv~av~~~~--P~~~I~~EDf~~~~af~iL~ry------r~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~ 296 (563)
T PRK13529 225 EFVDEFVQAVKRRF--PNALLQFEDFAQKNARRILERY------RDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQ 296 (563)
T ss_pred HHHHHHHHHHHHhC--CCeEEehhhcCCchHHHHHHHh------ccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhc
Confidence 34455555555544 555888877642 23 235666678888888876666666555432111234
Q ss_pred EEEecCcchHHHHHHHHHHH----cCC
Q 021613 179 IIAETGAGQHGVATATVCAR----FGL 201 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa~----~Gi 201 (310)
.|+..|+|..|.++|-.... .|+
T Consensus 297 riv~~GAGsAgiGia~ll~~~~~~~Gl 323 (563)
T PRK13529 297 RIVFLGAGSAGCGIADQIVAAMVREGL 323 (563)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHcCC
Confidence 45678999999888887665 688
No 425
>PRK10083 putative oxidoreductase; Provisional
Probab=27.84 E-value=2.8e+02 Score=25.72 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=32.7
Q ss_pred eEEEecCcchHHHHHHHHHHH-cCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 178 RIIAETGAGQHGVATATVCAR-FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~-~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
++++ .++|--|.+++..|+. +|.+.++.+... ..|.+.++.+|++-+.
T Consensus 163 ~vlI-~g~g~vG~~~~~~a~~~~G~~~v~~~~~~-----~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 163 VALI-YGAGPVGLTIVQVLKGVYNVKAVIVADRI-----DERLALAKESGADWVI 211 (339)
T ss_pred EEEE-ECCCHHHHHHHHHHHHhCCCCEEEEEcCC-----HHHHHHHHHhCCcEEe
Confidence 4555 4578888888888886 698866665332 3466777888886543
No 426
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=27.79 E-value=5.3e+02 Score=24.46 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=30.6
Q ss_pred HHHHHHhhhcCCCeEEEecCcc--hHHHH-HHHHHHHcCCeEEEEe
Q 021613 165 VGQALLAKRLGKTRIIAETGAG--QHGVA-TATVCARFGLQCIVYM 207 (310)
Q Consensus 165 ~~~l~~a~~~g~~~~Vv~aSsG--Nhg~A-lA~aaa~~Gi~~~Ivm 207 (310)
.+.+..+.+.++...|+-++.- |.-.. +-..|+.+|++..++-
T Consensus 137 ~n~VtkaIekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVk 182 (263)
T PTZ00222 137 LQEVTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVK 182 (263)
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 4455666667776666666664 56654 8899999999998774
No 427
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=27.73 E-value=69 Score=30.71 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=24.9
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
+..|+|-.|.++|++.++.|++++|+=..
T Consensus 11 iIVGaG~~Gl~~A~~L~~~G~~v~liE~~ 39 (388)
T PRK07494 11 AVIGGGPAGLAAAIALARAGASVALVAPE 39 (388)
T ss_pred EEECcCHHHHHHHHHHhcCCCeEEEEeCC
Confidence 34799999999999999999999888543
No 428
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=27.54 E-value=2.3e+02 Score=21.97 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=30.5
Q ss_pred cCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEc
Q 021613 174 LGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (310)
Q Consensus 174 ~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~ 233 (310)
...+.+|+....=..-..++..++.++=...|++-..+ ....+.++.+|++.+..|
T Consensus 61 ~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~----~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 61 EKADAVVILTDDDEENLLIALLARELNPDIRIIARVND----PENAELLRQAGADHVISP 116 (116)
T ss_dssp GCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEESS----HHHHHHHHHTT-SEEEEH
T ss_pred cccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEECC----HHHHHHHHHCCcCEEECc
Confidence 44555555444444556667777774433333333332 234567788999987653
No 429
>PRK07825 short chain dehydrogenase; Provisional
Probab=27.53 E-value=4.5e+02 Score=23.51 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=26.0
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.++|+.++|.-|.++|......|.+++++..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r 37 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDL 37 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 35778888899999999999999998766543
No 430
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=27.48 E-value=4.8e+02 Score=23.82 Aligned_cols=66 Identities=8% Similarity=-0.024 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceeec
Q 021613 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYIL 261 (310)
Q Consensus 190 ~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~~~~~Yi~ 261 (310)
.++-.+.+.+|++..++-+..+.......++.+..-|.++++..+. .+.++ +...++++++.+|++
T Consensus 21 ~G~~~~~~~~gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g~--~~~~~----~~~vA~~~p~~~F~~ 86 (258)
T cd06353 21 EGRKAAEKALGVEVTYVENVPEGADAERVLRELAAQGYDLIFGTSF--GFMDA----ALKVAKEYPDVKFEH 86 (258)
T ss_pred HHHHHHHHhcCCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECch--hhhHH----HHHHHHHCCCCEEEE
Confidence 4444555668999888776633333456677777779999998653 34443 444556667777776
No 431
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=27.36 E-value=2.2e+02 Score=28.33 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=35.8
Q ss_pred EEecCcchHHHHHHHHHHHcCC-eEEEEeCCC--chhchHHHHHHHHHCCCEEEE
Q 021613 180 IAETGAGQHGVATATVCARFGL-QCIVYMGAQ--DMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi-~~~Ivmp~~--~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
|+..++||.|.-+|..+.++|. +++++.... ........++.++..|.+++.
T Consensus 276 VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 276 VVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEe
Confidence 3446889999999999999998 788886532 111122335667778877653
No 432
>PRK09072 short chain dehydrogenase; Provisional
Probab=27.27 E-value=4.5e+02 Score=23.38 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=35.7
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
+.++|+.++|-.|.++|......|.+++++...... .......+ ..+.++..+..+
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~-~~~~~~~~~~~D 61 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEK--LEALAARL-PYPGRHRWVVAD 61 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHH-hcCCceEEEEcc
Confidence 357788888999999999999999987776543221 11111222 246666666543
No 433
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=27.16 E-value=3.4e+02 Score=24.95 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=31.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~ 228 (310)
+.+++. ++|..|.+++..|+.+|++.+++...+ ..+...++.+|++
T Consensus 161 ~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~~-----~~~~~~~~~~g~~ 206 (334)
T cd08234 161 DSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEPN-----EEKLELAKKLGAT 206 (334)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECCC-----HHHHHHHHHhCCe
Confidence 345555 578899999999999999844444332 2345556677875
No 434
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=27.12 E-value=3.8e+02 Score=26.32 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=42.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHH-CCCEEEEEcCCCCCHHHHHH
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGAEVRAVHSGTATLKDATS 244 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~-~GA~Vv~v~~~~~~~~da~~ 244 (310)
+.++|++.+|-.|.-+--.|+..|.+++-+... ..|.+.++. +|-+..+=-.. +++.++..
T Consensus 152 etvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg------~eK~~~l~~~lGfD~~idyk~-~d~~~~L~ 213 (340)
T COG2130 152 ETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG------AEKCDFLTEELGFDAGIDYKA-EDFAQALK 213 (340)
T ss_pred CEEEEEecccccchHHHHHHHhhCCeEEEecCC------HHHHHHHHHhcCCceeeecCc-ccHHHHHH
Confidence 457888889999999999999999998887654 347777777 67665443322 34444433
No 435
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=26.96 E-value=2.7e+02 Score=25.91 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=31.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcC-CeEEEEeCCCchhchHHHHHHHHHCCCEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFG-LQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~G-i~~~Ivmp~~~~~~~~~kv~~~~~~GA~V 229 (310)
+.+++. ++|..|.+++..++.+| .++++ +... ..|...++.+|++-
T Consensus 168 ~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~~~~-----~~~~~~~~~~g~~~ 214 (345)
T cd08286 168 DTVAIV-GAGPVGLAALLTAQLYSPSKIIM-VDLD-----DNRLEVAKKLGATH 214 (345)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-EcCC-----HHHHHHHHHhCCCc
Confidence 355664 56999999999999999 55444 4322 34556677788753
No 436
>PRK06720 hypothetical protein; Provisional
Probab=26.95 E-value=4.1e+02 Score=22.81 Aligned_cols=56 Identities=27% Similarity=0.167 Sum_probs=35.1
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
..+++.+++--|.++|....+.|.+++++-..... ...-.+.++..|.++..+..+
T Consensus 18 ~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~--~~~~~~~l~~~~~~~~~~~~D 73 (169)
T PRK06720 18 VAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQES--GQATVEEITNLGGEALFVSYD 73 (169)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHH--HHHHHHHHHhcCCcEEEEEcc
Confidence 45666667779999999999999887766533221 111124455667776555443
No 437
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=26.75 E-value=1.8e+02 Score=28.29 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=25.3
Q ss_pred EecCcc--hHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 181 AETGAG--QHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 181 v~aSsG--Nhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
+-.|.+ |.+.+++.+++++|++++++.|...
T Consensus 160 a~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~ 192 (334)
T PRK01713 160 VYIGDARNNMGNSLLLIGAKLGMDVRICAPKAL 192 (334)
T ss_pred EEECCCccCHHHHHHHHHHHcCCEEEEECCchh
Confidence 334555 6899999999999999999999864
No 438
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=26.57 E-value=5.3e+02 Score=24.38 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=30.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~V 229 (310)
+++++. ++|..|.+++..|+.+|.+.++++... ..+.+.++.+|++-
T Consensus 184 ~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~~-----~~~~~~~~~~g~~~ 230 (363)
T cd08279 184 DTVAVI-GCGGVGLNAIQGARIAGASRIIAVDPV-----PEKLELARRFGATH 230 (363)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcCC-----HHHHHHHHHhCCeE
Confidence 356665 678999999999999998734443222 22445556677743
No 439
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=26.57 E-value=2.2e+02 Score=25.45 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=28.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCe-EEEEeCCCchhchHHHHHHHHHCC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQ-CIVYMGAQDMERQALNVFRMRLLG 226 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~-~~Ivmp~~~~~~~~~kv~~~~~~G 226 (310)
+.+++. +.|..|.++...|+.+|.+ ++++. .. ..+...++.+|
T Consensus 99 ~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~~-~~-----~~~~~~~~~~g 142 (277)
T cd08255 99 ERVAVV-GLGLVGLLAAQLAKAAGAREVVGVD-PD-----AARRELAEALG 142 (277)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEC-CC-----HHHHHHHHHcC
Confidence 345554 6789999999999999998 44432 21 23445566666
No 440
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=26.55 E-value=1.1e+02 Score=29.78 Aligned_cols=29 Identities=31% Similarity=0.339 Sum_probs=25.6
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~ 210 (310)
--++|+.|+.++.+|+++|++++++-|..
T Consensus 7 ilG~Gql~~ml~~aa~~lG~~v~~~d~~~ 35 (372)
T PRK06019 7 IIGGGQLGRMLALAAAPLGYKVIVLDPDP 35 (372)
T ss_pred EECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 35789999999999999999999998764
No 441
>PRK06484 short chain dehydrogenase; Validated
Probab=26.51 E-value=5.3e+02 Score=25.74 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=41.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
+.++|+.+++.-|.++|....+.|.+++++-.... .-.+..+.+|.++..+..+-.+. +.+.++++...++
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 76 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVE-----RARERADSLGPDHHALAMDVSDE-AQIREGFEQLHRE 76 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHHhCCceeEEEeccCCH-HHHHHHHHHHHHH
Confidence 34677777788999999999999988766633221 11123444577765554432222 3345555544443
No 442
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=26.47 E-value=80 Score=32.19 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.7
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
.-|+|-.|.++|+.+++.|++++++=.
T Consensus 11 IIGGGi~G~~~A~~la~rGl~V~LvEk 37 (508)
T PRK12266 11 VIGGGINGAGIARDAAGRGLSVLLCEQ 37 (508)
T ss_pred EECcCHHHHHHHHHHHHCCCeEEEEec
Confidence 359999999999999999999887753
No 443
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.42 E-value=4.8e+02 Score=23.45 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=22.6
Q ss_pred eEEEecC--cchHHHHHHHHHHHcCCeEEEEe
Q 021613 178 RIIAETG--AGQHGVATATVCARFGLQCIVYM 207 (310)
Q Consensus 178 ~~Vv~aS--sGNhg~AlA~aaa~~Gi~~~Ivm 207 (310)
..+|+.+ ++--|.++|....+.|.++++..
T Consensus 8 ~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~ 39 (261)
T PRK08690 8 KILITGMISERSIAYGIAKACREQGAELAFTY 39 (261)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 4556653 45789999999999999887753
No 444
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=26.32 E-value=3.1e+02 Score=24.51 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=26.8
Q ss_pred CCeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 176 ~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
.++++++.++|..|.+++......|.+++++..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEec
Confidence 346788888899999999998888988776653
No 445
>PRK07538 hypothetical protein; Provisional
Probab=26.29 E-value=80 Score=30.81 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=24.0
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEe
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYM 207 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivm 207 (310)
+..|+|=.|.++|++.++.|++++||=
T Consensus 4 ~IVGaG~aGl~~A~~L~~~G~~v~v~E 30 (413)
T PRK07538 4 LIAGGGIGGLTLALTLHQRGIEVVVFE 30 (413)
T ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 346999999999999999999998884
No 446
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=26.28 E-value=4.4e+02 Score=29.24 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=47.1
Q ss_pred CeEEEecCcc--h--HHHHHHHHHHHcCCeEEEEe---CCCc------hhchHHHHHHHHHCCCEEEEEcCCCCCHHHHH
Q 021613 177 TRIIAETGAG--Q--HGVATATVCARFGLQCIVYM---GAQD------MERQALNVFRMRLLGAEVRAVHSGTATLKDAT 243 (310)
Q Consensus 177 ~~~Vv~aSsG--N--hg~AlA~aaa~~Gi~~~Ivm---p~~~------~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~ 243 (310)
++++++-|+. | --+..|-.|.+++-+-+++. |+.. ..+-..+.+..+.+||+++.+.++ +.
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~--dv---- 322 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGG--DV---- 322 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCC--cH----
Confidence 5677766654 3 33445556667787766553 4421 111234666778999999999874 33
Q ss_pred HHHHHHHHHccCCceeecCCC
Q 021613 244 SEAIRDWVTNVETTHYILGSV 264 (310)
Q Consensus 244 ~~a~~~~~~~~~~~~Yi~gs~ 264 (310)
.+++..|++..+-+..++|..
T Consensus 323 ~~~i~~ya~~~~~TkiViG~~ 343 (890)
T COG2205 323 AKAIARYAREHNATKIVIGRS 343 (890)
T ss_pred HHHHHHHHHHcCCeeEEeCCC
Confidence 333444555545555555543
No 447
>PRK11914 diacylglycerol kinase; Reviewed
Probab=26.23 E-value=5.4e+02 Score=24.05 Aligned_cols=59 Identities=12% Similarity=0.078 Sum_probs=37.5
Q ss_pred CCCC-CCChHHHHHHHH-HHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 021613 152 DLNH-TGAHKINNAVGQ-ALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (310)
Q Consensus 152 ~lnp-TGSfK~Rga~~~-l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~ 210 (310)
-+|| .|+-+....+.. +..+.+.|.+-.++.+...+|+..+|..+...+...+|++..+
T Consensus 14 I~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGD 74 (306)
T PRK11914 14 LTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGD 74 (306)
T ss_pred EECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 4577 455554333333 3334456665445556667899999888878888888887664
No 448
>PRK08703 short chain dehydrogenase; Provisional
Probab=26.02 E-value=4.4e+02 Score=22.95 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=27.2
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
+.++++.++|.-|.++|......|.+++++-..
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~ 39 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVARH 39 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 357788888999999999999999987766543
No 449
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=25.98 E-value=1.2e+02 Score=25.85 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=41.4
Q ss_pred HHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCC--chhchHHH--HHHHHHCC---CEEEEEcCC
Q 021613 164 AVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQ--DMERQALN--VFRMRLLG---AEVRAVHSG 235 (310)
Q Consensus 164 a~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~--~~~~~~~k--v~~~~~~G---A~Vv~v~~~ 235 (310)
+...+..+++.|.+-.|+ | |.+-..+...++++||.-.++.... . |..| ...++.++ .+|..++.+
T Consensus 132 ~~~~l~~L~~~Gi~~~i~--T-GD~~~~a~~~~~~lgi~~~~v~a~~~~k---P~~k~~~~~i~~l~~~~~~v~~vGDg 204 (215)
T PF00702_consen 132 AKEALQELKEAGIKVAIL--T-GDNESTASAIAKQLGIFDSIVFARVIGK---PEPKIFLRIIKELQVKPGEVAMVGDG 204 (215)
T ss_dssp HHHHHHHHHHTTEEEEEE--E-SSEHHHHHHHHHHTTSCSEEEEESHETT---THHHHHHHHHHHHTCTGGGEEEEESS
T ss_pred hhhhhhhhhccCcceeee--e-cccccccccccccccccccccccccccc---ccchhHHHHHHHHhcCCCEEEEEccC
Confidence 455566666777754443 3 5555556667889999544444443 3 4566 77777776 378888864
No 450
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=25.88 E-value=2.8e+02 Score=25.89 Aligned_cols=61 Identities=8% Similarity=-0.021 Sum_probs=35.3
Q ss_pred eEEEEecCCCCCCChHHHHHHHHHHH-hhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEE
Q 021613 145 HIYLKREDLNHTGAHKINNAVGQALL-AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVY 206 (310)
Q Consensus 145 ~I~lK~E~lnpTGSfK~Rga~~~l~~-a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Iv 206 (310)
++.+-....+++...+..+....+.. ..+...+ +|.+.+..+...+.+.+|+..|++++.+
T Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD-vV~~~g~~~~~~~~~~aa~~~~iPvv~~ 118 (363)
T cd03786 57 DYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPD-LVLVLGDTNETLAAALAAFKLGIPVAHV 118 (363)
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCchHHHHHHHHHHHcCCCEEEE
Confidence 34444433333333444444444333 3344445 6666665577788889999999997654
No 451
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=25.87 E-value=2.3e+02 Score=26.44 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=32.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+.++|. ++|..|.+++..|+.+|.+.+++... . ..|....+.+|++.+
T Consensus 165 ~~vlV~-g~g~vg~~~~~la~~~G~~~v~~~~~-~----~~~~~~~~~~g~~~~ 212 (341)
T cd05281 165 KSVLIT-GCGPIGLMAIAVAKAAGASLVIASDP-N----PYRLELAKKMGADVV 212 (341)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC-C----HHHHHHHHHhCccee
Confidence 456664 56899999999999999854445432 2 345566677887543
No 452
>PRK07577 short chain dehydrogenase; Provisional
Probab=25.86 E-value=4.3e+02 Score=22.77 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=27.6
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~ 210 (310)
.++++.++|.-|.++|....+.|.+++++....
T Consensus 5 ~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~ 37 (234)
T PRK07577 5 TVLVTGATKGIGLALSLRLANLGHQVIGIARSA 37 (234)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467888889999999999999999988776543
No 453
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=25.79 E-value=4.5e+02 Score=24.88 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=29.6
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~ 228 (310)
+++++. ++|..|.+++..|+.+|.+.+++.... ..+.+.++.+|++
T Consensus 189 ~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~s-----~~~~~~~~~~g~~ 234 (367)
T cd08263 189 ETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDVR-----DEKLAKAKELGAT 234 (367)
T ss_pred CEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHhCCc
Confidence 345555 678999999999999999844443222 2233445556764
No 454
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=25.76 E-value=1.4e+02 Score=25.77 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=27.1
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
.|..-|.|+-|+++|-.++.+|++++++-|...
T Consensus 38 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 38 TVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred EEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence 344469999999999999999999999987754
No 455
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=25.54 E-value=2.3e+02 Score=27.12 Aligned_cols=48 Identities=27% Similarity=0.351 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhcCCCe-EEE-ecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 162 NNAVGQALLAKRLGKTR-IIA-ETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 162 Rga~~~l~~a~~~g~~~-~Vv-~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
+.+...+..|.+.|++- +++ ++--.+.|+.+|..-.+.||+++++...
T Consensus 131 ~tv~~~l~~A~~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Ds 180 (310)
T PRK08535 131 SAALSVIKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDS 180 (310)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehh
Confidence 45566667776676543 333 3333578999999999999999987543
No 456
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=25.52 E-value=2.3e+02 Score=28.31 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=33.1
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeCC------CchhchHHHHHHHHHCCCEEE
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMGA------QDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~------~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+.-++|..|.-+|...+++|.+++++-.. .+.+-...-.+.++..|-+++
T Consensus 178 vIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~ 233 (466)
T PRK06115 178 VVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFK 233 (466)
T ss_pred EEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEE
Confidence 44689999999999999999999987532 221112222345666675554
No 457
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=25.50 E-value=4.8e+02 Score=23.21 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=23.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
.+++...+|..|.+++..++.+|.+.+++..
T Consensus 142 ~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~ 172 (323)
T cd08241 142 TVLVLGAAGGVGLAAVQLAKALGARVIAAAS 172 (323)
T ss_pred EEEEEcCCchHHHHHHHHHHHhCCEEEEEeC
Confidence 4555555689999999999999998655543
No 458
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=25.50 E-value=2.2e+02 Score=26.99 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=31.5
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+.--+.|..|.+++..++.+|.+++++-.. ..+..+.+.+|++.+
T Consensus 155 vlViG~G~iG~~~a~~L~~~Ga~V~v~~r~------~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 155 VLVLGFGRTGMTLARTLKALGANVTVGARK------SAHLARITEMGLSPF 199 (296)
T ss_pred EEEECCcHHHHHHHHHHHHCCCEEEEEECC------HHHHHHHHHcCCeee
Confidence 334678999999999999999877776433 223445566776643
No 459
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=25.49 E-value=87 Score=30.41 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=24.4
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+-.|+|-.|.++|.+-++.|++++|+=.
T Consensus 8 ~IvGaG~~Gl~~A~~L~~~G~~v~viE~ 35 (405)
T PRK08850 8 AIIGGGMVGLALAAALKESDLRIAVIEG 35 (405)
T ss_pred EEECccHHHHHHHHHHHhCCCEEEEEcC
Confidence 3479999999999999999999988843
No 460
>PHA02554 13 neck protein; Provisional
Probab=25.40 E-value=88 Score=30.23 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=31.8
Q ss_pred hHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 021613 215 QALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (310)
Q Consensus 215 ~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~ 252 (310)
++.|-..+|.+||=|+.|+.+++-..|++++|++.+.+
T Consensus 9 ~eLkD~iLRrLGAPii~Ievt~dQi~D~I~rALely~E 46 (311)
T PHA02554 9 RELKDYILRRLGAPIINVEVTEDQIYDCIQRALELYGE 46 (311)
T ss_pred HHHHHHHHHhcCCCeeEeecCHHHHHHHHHHHHHHHHH
Confidence 56777889999999999998766788899999986554
No 461
>PRK08013 oxidoreductase; Provisional
Probab=25.32 E-value=86 Score=30.48 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=24.6
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+..|+|-.|.++|++-++.|++++|+=.
T Consensus 7 ~IvGaGpaGl~~A~~La~~G~~v~viE~ 34 (400)
T PRK08013 7 VIAGGGMVGLAVACGLQGSGLRVAVLEQ 34 (400)
T ss_pred EEECcCHHHHHHHHHHhhCCCEEEEEeC
Confidence 3469999999999999999999998864
No 462
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.09 E-value=5e+02 Score=23.22 Aligned_cols=31 Identities=16% Similarity=-0.031 Sum_probs=22.8
Q ss_pred eEEEecCc--chHHHHHHHHHHHcCCeEEEEeC
Q 021613 178 RIIAETGA--GQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 178 ~~Vv~aSs--GNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
..+|+.++ +.-|.++|...++.|.+++++..
T Consensus 12 ~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 12 RGLVVGIANEQSIAWGCARAFRALGAELAVTYL 44 (258)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 34555544 37999999999999998777644
No 463
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=25.02 E-value=1.4e+02 Score=29.81 Aligned_cols=56 Identities=16% Similarity=0.070 Sum_probs=36.1
Q ss_pred EEecCcc-hHHHHHHHHHHHcCCeEEEEeCCC-ch-hchHHHHHHHHHCCC-EEEEEcCC
Q 021613 180 IAETGAG-QHGVATATVCARFGLQCIVYMGAQ-DM-ERQALNVFRMRLLGA-EVRAVHSG 235 (310)
Q Consensus 180 Vv~aSsG-Nhg~AlA~aaa~~Gi~~~Ivmp~~-~~-~~~~~kv~~~~~~GA-~Vv~v~~~ 235 (310)
|++.|+| .+-..+.|.-.+.+.+++.|.-+- .. +....-.++...+|| +++.++..
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r 60 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDAR 60 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-H
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchH
Confidence 4678888 899999999999999988877431 11 112233345677899 89988764
No 464
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=25.01 E-value=2e+02 Score=30.81 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=36.3
Q ss_pred EEecCcchHHHHHHHHHHHcCCe-EEEEeCCCc--hhchHHHHHHHHHCCCEEEE
Q 021613 180 IAETGAGQHGVATATVCARFGLQ-CIVYMGAQD--MERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~-~~Ivmp~~~--~~~~~~kv~~~~~~GA~Vv~ 231 (310)
|+..++||.|.-+|..+.++|.+ ++++..... +......+..++..|.+++.
T Consensus 573 VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~ 627 (752)
T PRK12778 573 VAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLT 627 (752)
T ss_pred EEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 44579999999999999999998 888875431 11122333456778877653
No 465
>PRK05868 hypothetical protein; Validated
Probab=24.99 E-value=89 Score=30.22 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.6
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEe
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYM 207 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivm 207 (310)
-.|+|-.|.++|+..++.|++++|+=
T Consensus 6 IvGgG~aGl~~A~~L~~~G~~v~viE 31 (372)
T PRK05868 6 VSGASVAGTAAAYWLGRHGYSVTMVE 31 (372)
T ss_pred EECCCHHHHHHHHHHHhCCCCEEEEc
Confidence 46999999999999999999999885
No 466
>PLN02686 cinnamoyl-CoA reductase
Probab=24.90 E-value=4.9e+02 Score=25.03 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=26.5
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.++|+.++|-.|.+++....+.|.+++++..
T Consensus 54 k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 54 RLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEeC
Confidence 35788888899999999999999998877654
No 467
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=24.68 E-value=2.5e+02 Score=26.88 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=24.5
Q ss_pred cCcc-hHHHHHHHHHHHcCCeEEEEeCCCc
Q 021613 183 TGAG-QHGVATATVCARFGLQCIVYMGAQD 211 (310)
Q Consensus 183 aSsG-Nhg~AlA~aaa~~Gi~~~Ivmp~~~ 211 (310)
.|.+ |.+.+++.+++++|++++++-|...
T Consensus 153 vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~ 182 (302)
T PRK14805 153 VGDGNNVTHSLMYGAAILGATMTVICPPGH 182 (302)
T ss_pred EcCCCccHHHHHHHHHHcCCEEEEECCchh
Confidence 3444 6789999999999999999999863
No 468
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=24.62 E-value=2e+02 Score=28.90 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.1
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEE
Q 021613 179 IIAETGAGQHGVATATVCARFGLQCIVY 206 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa~~Gi~~~Iv 206 (310)
.|+..|.|+-|..+|..++.+|.+++++
T Consensus 197 ~VvViG~G~IG~~vA~~ak~~Ga~ViV~ 224 (406)
T TIGR00936 197 TVVVAGYGWCGKGIAMRARGMGARVIVT 224 (406)
T ss_pred EEEEECCCHHHHHHHHHHhhCcCEEEEE
Confidence 4556899999999999999999997665
No 469
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=24.54 E-value=2.3e+02 Score=27.02 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=36.1
Q ss_pred EEecCcchHHHHHHHHHHHcCCe-EEEEeCCCch--hchHHHHHHHHHCCCEEEE
Q 021613 180 IAETGAGQHGVATATVCARFGLQ-CIVYMGAQDM--ERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~-~~Ivmp~~~~--~~~~~kv~~~~~~GA~Vv~ 231 (310)
|+..++|+.|.-+|......|.+ ++|+...... ......+++++..|.+++.
T Consensus 175 vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~ 229 (352)
T PRK12770 175 VVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLE 229 (352)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEee
Confidence 44578899999999888888997 8888754211 0012345668888887755
No 470
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=24.52 E-value=98 Score=28.00 Aligned_cols=27 Identities=33% Similarity=0.521 Sum_probs=23.7
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
.-++|-.|.+.|..+++.|++++++=.
T Consensus 5 IIG~G~aGl~aA~~l~~~g~~v~lie~ 31 (300)
T TIGR01292 5 IIGAGPAGLTAAIYAARANLKTLIIEG 31 (300)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEec
Confidence 368999999999999999999888763
No 471
>PRK00861 putative lipid kinase; Reviewed
Probab=24.37 E-value=4.9e+02 Score=24.22 Aligned_cols=82 Identities=12% Similarity=-0.033 Sum_probs=40.2
Q ss_pred CCCC-CChHHHHHHHHHHHhhhcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 153 LNHT-GAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 153 lnpT-GSfK~Rga~~~l~~a~~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
.||. |+.+....+..+....+.+.+-.+..+...+|+..+|..+...+.+++|++..+-. -..-+..+...+..+-.
T Consensus 9 ~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGT--l~evv~~l~~~~~~lgv 86 (300)
T PRK00861 9 FNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDGT--LSAVAGALIGTDIPLGI 86 (300)
T ss_pred ECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChHH--HHHHHHHHhcCCCcEEE
Confidence 4663 44443333333333223333323344555577777777777777777777765421 12223333333444555
Q ss_pred EcCCC
Q 021613 232 VHSGT 236 (310)
Q Consensus 232 v~~~~ 236 (310)
++.++
T Consensus 87 iP~GT 91 (300)
T PRK00861 87 IPRGT 91 (300)
T ss_pred EcCCc
Confidence 66543
No 472
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=24.34 E-value=3.7e+02 Score=24.77 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHhhhcCCCeEEEecCcc-----hHHHHHHHHHHHcCCeEEEEeCC--CchhchHHHHHHHHHCCCEEE
Q 021613 159 HKINNAVGQALLAKRLGKTRIIAETGAG-----QHGVATATVCARFGLQCIVYMGA--QDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 159 fK~Rga~~~l~~a~~~g~~~~Vv~aSsG-----Nhg~AlA~aaa~~Gi~~~Ivmp~--~~~~~~~~kv~~~~~~GA~Vv 230 (310)
.........+....+ ..+-+|||..+| |...-++-.++..++++++|++. ++..+.-..++.++..|-.+.
T Consensus 91 I~~~~l~~~l~~l~~-~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtlLt~eal~~~gl~l~ 168 (223)
T COG0132 91 IDLEKLSQGLRQLLK-KYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLLTVEALRARGLPLA 168 (223)
T ss_pred ccHHHHHHHHHhhhc-ccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHHHHCCCCEE
Confidence 444444443333333 445678887777 56677888888899999998876 344445667788888887763
No 473
>PRK07060 short chain dehydrogenase; Provisional
Probab=24.33 E-value=4.7e+02 Score=22.67 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=34.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHH-HHHCCCEEEEEcC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFR-MRLLGAEVRAVHS 234 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~-~~~~GA~Vv~v~~ 234 (310)
+.++|+.++|.-|..+|....+.|.+++++.... .+.+. ....+.+++..+-
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~------~~~~~~~~~~~~~~~~~D~ 62 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNA------AALDRLAGETGCEPLRLDV 62 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHHhCCeEEEecC
Confidence 3577788888999999999999999876665332 12222 2345667666554
No 474
>PRK06196 oxidoreductase; Provisional
Probab=24.33 E-value=5.7e+02 Score=23.65 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=26.1
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.++|+.++|--|.++|..-.+.|.+++++..
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R 58 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPAR 58 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 35778888888999999999999998777643
No 475
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=24.29 E-value=94 Score=30.89 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.8
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEe
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYM 207 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivm 207 (310)
..++|-.|.+.|+.+++.|.+++|+=
T Consensus 9 VVG~G~aGl~AA~~aa~~G~~V~vlE 34 (466)
T PRK08274 9 VIGGGNAALCAALAAREAGASVLLLE 34 (466)
T ss_pred EECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 46999999999999999999888764
No 476
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=24.14 E-value=90 Score=30.05 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=24.2
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEe
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYM 207 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivm 207 (310)
+-.|+|-.|.++|.+.++.|++++|+=
T Consensus 5 ~IvGgG~~Gl~~A~~L~~~G~~v~l~E 31 (374)
T PRK06617 5 VILGCGLSGMLTALSFAQKGIKTTIFE 31 (374)
T ss_pred EEECCCHHHHHHHHHHHcCCCeEEEec
Confidence 346999999999999999999999985
No 477
>PRK07069 short chain dehydrogenase; Validated
Probab=24.14 E-value=4.8e+02 Score=22.71 Aligned_cols=31 Identities=23% Similarity=0.117 Sum_probs=25.8
Q ss_pred EEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 179 IIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
++|+.++|.-|.++|....+.|.+++++...
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 5678888899999999999999988777654
No 478
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=24.12 E-value=89 Score=33.17 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=25.7
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
+..|+|-.|.+.|+++++.|.++.++-+.
T Consensus 8 IVVGGGpAG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 8 IVVGGGHAGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred EEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence 34699999999999999999999998765
No 479
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=24.04 E-value=1.9e+02 Score=27.97 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHHcCCeEEEEe
Q 021613 186 GQHGVATATVCARFGLQCIVYM 207 (310)
Q Consensus 186 GNhg~AlA~aaa~~Gi~~~Ivm 207 (310)
++-|..+|-.=++.||++++++
T Consensus 156 ~~eG~~~ak~L~~~gI~~~~I~ 177 (301)
T COG1184 156 RGEGRIMAKELRQSGIPVTVIV 177 (301)
T ss_pred cchHHHHHHHHHHcCCceEEEe
Confidence 3444444444444555544443
No 480
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=23.99 E-value=1.1e+02 Score=28.10 Aligned_cols=28 Identities=32% Similarity=0.313 Sum_probs=25.4
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
.-++|=.|.++|+..++.|.+++|+=..
T Consensus 4 IIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 4 IIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred EECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 3599999999999999999999999766
No 481
>PLN00015 protochlorophyllide reductase
Probab=23.99 E-value=5.2e+02 Score=23.93 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=20.7
Q ss_pred EecCcchHHHHHHHHHHHcC-CeEEEEe
Q 021613 181 AETGAGQHGVATATVCARFG-LQCIVYM 207 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~G-i~~~Ivm 207 (310)
|+.+++--|.++|....+.| .+++++.
T Consensus 2 ITGas~GIG~aia~~l~~~G~~~V~~~~ 29 (308)
T PLN00015 2 ITGASSGLGLATAKALAETGKWHVVMAC 29 (308)
T ss_pred EeCCCChHHHHHHHHHHHCCCCEEEEEe
Confidence 56677778888888888899 7766654
No 482
>PRK06940 short chain dehydrogenase; Provisional
Probab=23.98 E-value=5.5e+02 Score=23.30 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=36.2
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHHH
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~ 249 (310)
..||+. +|--|.++|.... .|.+++++-.... ....-.+.++..|.++..+..+-.+. +.+..+++.
T Consensus 4 ~~lItG-a~gIG~~la~~l~-~G~~Vv~~~r~~~--~~~~~~~~l~~~~~~~~~~~~Dv~d~-~~i~~~~~~ 70 (275)
T PRK06940 4 VVVVIG-AGGIGQAIARRVG-AGKKVLLADYNEE--NLEAAAKTLREAGFDVSTQEVDVSSR-ESVKALAAT 70 (275)
T ss_pred EEEEEC-CChHHHHHHHHHh-CCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEEeecCCH-HHHHHHHHH
Confidence 345554 4678888888775 6887776643321 11122344555687776665432233 334444443
No 483
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=23.98 E-value=4.7e+02 Score=22.55 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCCCCC------HHHHHHHHHHHHHHc
Q 021613 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTAT------LKDATSEAIRDWVTN 253 (310)
Q Consensus 190 ~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~------~~da~~~a~~~~~~~ 253 (310)
.-+.. -+++|||.+|.+..... +......++..|-+++.++..... -++.+.++++...+.
T Consensus 23 ~n~~f-L~~L~LKTII~L~~e~~--~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~ 89 (164)
T PF03162_consen 23 ANFPF-LERLGLKTIINLRPEPP--SQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDP 89 (164)
T ss_dssp HHHHH-HHHHT-SEEEE--SS-----HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-G
T ss_pred hhHHH-HHHCCCceEEEecCCCC--CHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCC
Confidence 34443 44599999998865432 233445778899999888754211 234456666655443
No 484
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=23.95 E-value=1.8e+02 Score=30.95 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=29.3
Q ss_pred HHHcC--CeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 196 CARFG--LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 196 aa~~G--i~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
++++| ++..|++..+..+....-+++++.||++++.++..
T Consensus 411 ~~RhGqKlPL~VlvDnGsTeEDipA~~~~k~Ygi~ivVVDHH 452 (715)
T COG1107 411 AHRHGQKLPLLVLVDNGSTEEDIPAIKQLKAYGIDIVVVDHH 452 (715)
T ss_pred HHhcCCccceEEEEcCCCcccccHHHHHHHhcCCCEEEEcCC
Confidence 34444 67788887654443455678999999999999875
No 485
>PRK07236 hypothetical protein; Provisional
Probab=23.91 E-value=95 Score=29.92 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=25.3
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
+-.|+|=.|.++|.+-++.|++++||=..
T Consensus 10 iIVGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 10 VVIGGSLGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred EEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence 34699999999999999999999998743
No 486
>PRK06484 short chain dehydrogenase; Validated
Probab=23.90 E-value=7.3e+02 Score=24.72 Aligned_cols=69 Identities=19% Similarity=0.143 Sum_probs=41.5
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHH-HHCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRM-RLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~-~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~ 253 (310)
..+|+.+++.-|.++|..-.+.|.+++++-... .+++.+ +.+|.++..+..+-.+. +.+..+++...++
T Consensus 271 ~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~------~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~ 340 (520)
T PRK06484 271 VVAITGGARGIGRAVADRFAAAGDRLLIIDRDA------EGAKKLAEALGDEHLSVQADITDE-AAVESAFAQIQAR 340 (520)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHHhCCceeEEEccCCCH-HHHHHHHHHHHHH
Confidence 467788888999999999999999877664321 122222 34577765554432233 3345555544444
No 487
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=23.87 E-value=2.3e+02 Score=29.78 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=37.9
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCCCch---------------hchHHHHHHHHHCCCEEEEE
Q 021613 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDM---------------ERQALNVFRMRLLGAEVRAV 232 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~---------------~~~~~kv~~~~~~GA~Vv~v 232 (310)
|+.-|+|-.|.+.|+..++.|.+++||=..... +.....++.++.+|.+++.-
T Consensus 313 VaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 313 VAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred EEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 445799999999999999999999888433210 00123567788899888654
No 488
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=23.83 E-value=3.5e+02 Score=28.61 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhcCCCCCEEEccccch--------hhcCCCCCCCeEEEEecCCCCCCChHHHHHHHHHHHhhhcCCCeE
Q 021613 108 FQEELSGILRDYVGRETPLYFAERLTE--------HYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRI 179 (310)
Q Consensus 108 f~~el~~~l~~~vg~~TPL~~~~~Ls~--------~~~~~~~~g~~I~lK~E~lnpTGSfK~Rga~~~l~~a~~~g~~~~ 179 (310)
|.+|+-+.++...| |.=+++++.++. ++ ..++-+=.||.|-||+.=.=+.++.+......=.+..
T Consensus 251 ~~defv~av~~~fG-p~~~I~~EDf~~~~af~iL~ry------r~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~r 323 (581)
T PLN03129 251 LVDEFMEAVKQRWG-PKVLVQFEDFANKNAFRLLQRY------RTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQR 323 (581)
T ss_pred hHHHHHHHHHHHhC-CccEEehhhcCCccHHHHHHHh------ccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhce
Confidence 34555555555443 344777766542 23 2356666788888887665555555543221112344
Q ss_pred EEecCcchHHHHHHHHHHH-----cCC
Q 021613 180 IAETGAGQHGVATATVCAR-----FGL 201 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~-----~Gi 201 (310)
|+..|+|..|.++|-.... .|+
T Consensus 324 iv~~GAGsAgigia~ll~~~~~~~~Gl 350 (581)
T PLN03129 324 ILFAGAGEAGTGIAELIALAMSRQTGI 350 (581)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhcCC
Confidence 6678999988888866555 577
No 489
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=23.78 E-value=4.3e+02 Score=24.44 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=30.4
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~ 228 (310)
+.+++...+|..|.+++..|+.+|++++++... .+.+.++.+|++
T Consensus 164 ~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-------~~~~~~~~~g~~ 208 (350)
T cd08248 164 KRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-------DAIPLVKSLGAD 208 (350)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-------chHHHHHHhCCc
Confidence 345565557899999999999999986554421 133455566664
No 490
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=23.72 E-value=2.7e+02 Score=25.04 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=24.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+.+++...+|..|.+++..++.+|.+.+++..
T Consensus 141 ~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~ 172 (325)
T TIGR02824 141 ETVLIHGGASGIGTTAIQLAKAFGARVFTTAG 172 (325)
T ss_pred CEEEEEcCcchHHHHHHHHHHHcCCEEEEEeC
Confidence 35566666788999999999999998665543
No 491
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=23.72 E-value=95 Score=31.99 Aligned_cols=27 Identities=37% Similarity=0.613 Sum_probs=23.7
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
.-|+|-+|.++|+.+++.|++++++=.
T Consensus 11 IIGGGi~G~~iA~~La~rG~~V~LlEk 37 (546)
T PRK11101 11 IIGGGATGAGIARDCALRGLRCILVER 37 (546)
T ss_pred EECcCHHHHHHHHHHHHcCCeEEEEEC
Confidence 369999999999999999999888753
No 492
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.71 E-value=6.7e+02 Score=24.25 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=41.3
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCC-CEEEEEcCCCCCHHHHHHHHHHHHHHccC
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLG-AEVRAVHSGTATLKDATSEAIRDWVTNVE 255 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~G-A~Vv~v~~~~~~~~da~~~a~~~~~~~~~ 255 (310)
+.+++|.+++--|+++|.-.+++|-+.++.--... .....++.++..| +.-..++- .+.+|. .+..+...++..
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~--~~~etv~~~~~~g~~~~y~cdi--s~~eei-~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQ--GNEETVKEIRKIGEAKAYTCDI--SDREEI-YRLAKKVKKEVG 113 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCCeEEEEecccc--chHHHHHHHHhcCceeEEEecC--CCHHHH-HHHHHHHHHhcC
Confidence 34555555557999999999999985544432211 1345566777767 33344444 244553 333333344433
No 493
>PRK08163 salicylate hydroxylase; Provisional
Probab=23.66 E-value=98 Score=29.70 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=24.7
Q ss_pred EecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 181 AETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 181 v~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
+-.|+|=.|.++|.+.++.|++++|+=.
T Consensus 8 ~IvGaGiaGl~~A~~L~~~g~~v~v~Er 35 (396)
T PRK08163 8 LIVGGGIGGLAAALALARQGIKVKLLEQ 35 (396)
T ss_pred EEECCcHHHHHHHHHHHhCCCcEEEEee
Confidence 4469999999999999999999999853
No 494
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=23.59 E-value=96 Score=30.09 Aligned_cols=48 Identities=29% Similarity=0.376 Sum_probs=34.1
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeCC-Cch-------hchHHHHHHHHHCCC
Q 021613 180 IAETGAGQHGVATATVCARFGLQCIVYMGA-QDM-------ERQALNVFRMRLLGA 227 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~-~~~-------~~~~~kv~~~~~~GA 227 (310)
|+..|+|-.|.++|.+-++.|++++|+=.. ... .-.+.-++.++.+|.
T Consensus 5 V~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 5 VAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 345799999999999999999999998654 110 003445566666664
No 495
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=23.49 E-value=1.9e+02 Score=28.19 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=22.4
Q ss_pred hcCCCeEEEecCcchHHHHHHHHHHHcCCeEEEEeCC
Q 021613 173 RLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (310)
Q Consensus 173 ~~g~~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~ 209 (310)
+...+ +|+..++-..-..+|.+++.+|++++++++.
T Consensus 87 ~~kPd-~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P 122 (385)
T TIGR00215 87 QAKPD-LLVGIDAPDFNLTKELKKKDPGIKIIYYISP 122 (385)
T ss_pred hcCCC-EEEEeCCCCccHHHHHHHhhCCCCEEEEeCC
Confidence 33445 5555553122234677889999999998753
No 496
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=23.44 E-value=4.5e+02 Score=24.55 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=31.9
Q ss_pred CeEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEE
Q 021613 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (310)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv 230 (310)
+.+++...+|..|++++..++.+|.+.+... .. .|.+.++.+|++-+
T Consensus 156 ~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~------~~~~~~~~~g~~~v 202 (339)
T cd08249 156 KPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SP------KNFDLVKSLGADAV 202 (339)
T ss_pred CEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-Cc------ccHHHHHhcCCCEE
Confidence 3455555568899999999999999866554 21 24455567887433
No 497
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=23.44 E-value=3.4e+02 Score=29.08 Aligned_cols=75 Identities=17% Similarity=0.087 Sum_probs=50.9
Q ss_pred CCCChHHHHHHHHHHHhhhcCCCeEEEecCcc---hHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEE
Q 021613 155 HTGAHKINNAVGQALLAKRLGKTRIIAETGAG---QHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (310)
Q Consensus 155 pTGSfK~Rga~~~l~~a~~~g~~~~Vv~aSsG---Nhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~ 231 (310)
.||+=|.-.+..-+......|+...|++.+-- ++..-+.-....+|+.+.+++.... +. .+-..|+++|+.
T Consensus 124 ~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~---~~---~r~~~y~~dIvy 197 (656)
T PRK12898 124 QTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQS---PD---ERRAAYGADITY 197 (656)
T ss_pred eCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCC---HH---HHHHHcCCCEEE
Confidence 39999998765555544456776666655543 5666666677779999999988754 22 223358999988
Q ss_pred EcCC
Q 021613 232 VHSG 235 (310)
Q Consensus 232 v~~~ 235 (310)
....
T Consensus 198 gT~~ 201 (656)
T PRK12898 198 CTNK 201 (656)
T ss_pred ECCC
Confidence 7654
No 498
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=23.28 E-value=2.5e+02 Score=26.51 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=23.8
Q ss_pred EEecCcchHHHHHHHHHHHcCCeEEEEeC
Q 021613 180 IAETGAGQHGVATATVCARFGLQCIVYMG 208 (310)
Q Consensus 180 Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp 208 (310)
|.--|.|+.|.++|..++.+|.+++++-+
T Consensus 154 v~IiG~G~iG~avA~~L~~~G~~V~v~~R 182 (287)
T TIGR02853 154 VMVLGFGRTGMTIARTFSALGARVFVGAR 182 (287)
T ss_pred EEEEcChHHHHHHHHHHHHCCCEEEEEeC
Confidence 44568899999999999999998776643
No 499
>PRK07023 short chain dehydrogenase; Provisional
Probab=23.25 E-value=5.1e+02 Score=22.64 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=35.4
Q ss_pred eEEEecCcchHHHHHHHHHHHcCCeEEEEeCCCchhchHHHHHHHHHCCCEEEEEcCC
Q 021613 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (310)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aaa~~Gi~~~Ivmp~~~~~~~~~kv~~~~~~GA~Vv~v~~~ 235 (310)
.++|+.++|.-|.++|....+.|.+++++..... . ......|.++..+..+
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~---~----~~~~~~~~~~~~~~~D 53 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRH---P----SLAAAAGERLAEVELD 53 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcc---h----hhhhccCCeEEEEEec
Confidence 3678888899999999999999999877654322 1 1133457777665543
No 500
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=23.24 E-value=97 Score=32.66 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.0
Q ss_pred ecCcchHHHHHHHHHHHcCCeEEEEe
Q 021613 182 ETGAGQHGVATATVCARFGLQCIVYM 207 (310)
Q Consensus 182 ~aSsGNhg~AlA~aaa~~Gi~~~Ivm 207 (310)
.-|+|-+|.++|+.+++.|++++++=
T Consensus 76 VIGGGi~Ga~~A~~lA~rGl~V~LvE 101 (627)
T PLN02464 76 VVGGGATGAGVALDAATRGLRVGLVE 101 (627)
T ss_pred EECCCHHHHHHHHHHHhCCCEEEEEe
Confidence 36999999999999999999977764
Done!