RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021613
(310 letters)
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 220 bits (561), Expect = 5e-70
Identities = 116/224 (51%), Positives = 149/224 (66%), Gaps = 6/224 (2%)
Query: 74 GRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLT 133
FG FGG +VP+ LM AL++LE A D +FQ + + +L++Y GR T L + +T
Sbjct: 6 PYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT 65
Query: 134 EHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATA 193
+YLKREDL H GAHK N +GQALLAKR+GK+ IIAETGAGQHGVA+A
Sbjct: 66 AGT------RTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASA 119
Query: 194 TVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253
A GL+C +YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW +
Sbjct: 120 LASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGS 179
Query: 254 VETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRW 297
ET HY+LG+ AGPHPYP +VR+F E + +
Sbjct: 180 YETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLP 223
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 215 bits (547), Expect = 5e-68
Identities = 126/212 (59%), Positives = 155/212 (73%), Gaps = 5/212 (2%)
Query: 76 FGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEH 135
FG FGG++VPETL+ L ELE A + DD +F +L+ L+ + GR TPLY+A+RLTE
Sbjct: 3 FGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEK 62
Query: 136 YRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATV 195
GG IYLKREDL H GAHK NNA+GQALLAK +GKTR+IAETGAGQHGVATA
Sbjct: 63 I-----GGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMA 117
Query: 196 CARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVE 255
A G++ +YMGA+D+ERQ +NVFRM+LLGA V V+SG+ TLKDA +EA+RDWV E
Sbjct: 118 GALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFE 177
Query: 256 TTHYILGSVAGPHPYPMMVRDFHATSIGEMGW 287
THY++GSV GPHPYP +VRDF + E
Sbjct: 178 YTHYLIGSVVGPHPYPTIVRDFQSVIGREAKA 209
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 102 bits (253), Expect = 1e-25
Identities = 42/201 (20%), Positives = 67/201 (33%), Gaps = 16/201 (7%)
Query: 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL---AKRLG 175
TP+ RL++H GG H+Y KRED N A N L A G
Sbjct: 11 LTFGPTPIQPLARLSKHL----GGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQG 66
Query: 176 KTRIIAETGA-GQHGVATATVCARFGLQCIVYMGA-----QDMERQALNVFRMRLLGAEV 229
+++ G A V A G++C++ + + N+ R+LGA+V
Sbjct: 67 CDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADV 126
Query: 230 RAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWET 289
R V G + E + V Y + + HP + A E+ +
Sbjct: 127 RLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAE---EVRAQE 183
Query: 290 RCADCMRWWWFKCHGSLPRIC 310
+ C +
Sbjct: 184 AELGFKFDYVVVCSVTGSTQA 204
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 98.2 bits (243), Expect = 4e-24
Identities = 33/199 (16%), Positives = 65/199 (32%), Gaps = 19/199 (9%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL---AKRLGKTRII 180
+P+ RL++H G ++Y KRED N A N + T ++
Sbjct: 16 SPISNLNRLSQHL----GSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLV 71
Query: 181 AETG-AGQHGVATATVCARFGLQCIVYM--------GAQDMERQALNVFRMRLLGAEVRA 231
+ G A + A+ G +C++ +D+ + N+ R++GA+VR
Sbjct: 72 SIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRV 131
Query: 232 VHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRC 291
+ G + + + Y + + H Y + A E+ +
Sbjct: 132 IEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFA---DEVINQEVE 188
Query: 292 ADCMRWWWFKCHGSLPRIC 310
C +
Sbjct: 189 LGIKFDKIVVCCVTGSTTA 207
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 74.8 bits (183), Expect = 4e-16
Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 22/177 (12%)
Query: 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRL 174
++ +G TP+ + + I+LK E N G+ K A+ L A++
Sbjct: 3 MMERLIGS-TPIVRLDSI----------DSRIFLKLEKNNPGGSVKDRPALFMILDAEKR 51
Query: 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234
G + + + ++ + M + +++LGAE+
Sbjct: 52 GLLKNGIVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVE--RRKVLKMLGAEL----- 104
Query: 235 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRC 291
L +E + + P V T G +
Sbjct: 105 ---VLTPGELGMKGAVEKALEISRETGAHMLNQFENPYNVYSHQFT-TGPEILKQMD 157
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 75.8 bits (185), Expect = 6e-16
Identities = 28/191 (14%), Positives = 50/191 (26%), Gaps = 8/191 (4%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRI 179
+ L++AER + + G +++K ++HTG+ K RL K
Sbjct: 122 SNLFWAERFGKQF----LGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVG 177
Query: 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATL 239
+ G A + CA G+ IV++ A + L
Sbjct: 178 VGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMK 237
Query: 240 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWW 299
A L + D+ + +
Sbjct: 238 LIREITAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKG 297
Query: 300 FKCHGSLPRIC 310
FK L +
Sbjct: 298 FKMCQELGLVD 308
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 74.7 bits (182), Expect = 7e-16
Identities = 30/200 (15%), Positives = 60/200 (30%), Gaps = 15/200 (7%)
Query: 108 FQEELSGILR-DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNH--TGAHKINNA 164
L+ R + + ETP+ + ++ G +Y+KR+DL G +KI
Sbjct: 5 IFALLAKFPRVELIPWETPIQYLPNISREI------GADVYIKRDDLTGLGIGGNKIRKL 58
Query: 165 VGQALLAKRLG-KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR 223
A G I H T + GL I+ + ++ + + ++
Sbjct: 59 EYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIM 118
Query: 224 LLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIG 283
G E R + + +E I + + Y++ P+ +
Sbjct: 119 --GIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIP---PGGASPIGTLGYVRAVGE 173
Query: 284 EMGWETRCADCMRWWWFKCH 303
D +
Sbjct: 174 IATQSEVKFDSIVVAAGSGG 193
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 73.4 bits (179), Expect = 2e-15
Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 28/196 (14%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKIN---NAVGQALLAKRL 174
+G TP+ ++ + + G + K E N G+ K + A L
Sbjct: 40 KKIGD-TPMVRINKIGKKF----GLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTL 94
Query: 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234
I E +G G+ A A G +CI+ M + V +R LGAE+ +
Sbjct: 95 KPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSE---KVDVLRALGAEIVRTPT 151
Query: 235 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADC 294
++V + + H + ++T
Sbjct: 152 NA---------RFDSPESHVGVAWRLKNEIPNSHILDQYRNASN----PLAHYDT----T 194
Query: 295 MRWWWFKCHGSLPRIC 310
+C G L +
Sbjct: 195 ADEILQQCDGKLDMLV 210
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 71.5 bits (174), Expect = 7e-15
Identities = 27/194 (13%), Positives = 58/194 (29%), Gaps = 16/194 (8%)
Query: 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG 175
++ + + TP+ + + + + ++ K E+ GA K A+
Sbjct: 15 IKKFANK-TPVLTSSTVNKEF------VAEVFFKCENFQKMGAFKFRGALNALSQLNEAQ 67
Query: 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235
+ + +G H A A G+ + M E + V + G +V
Sbjct: 68 RKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAK---VAATKGYGGQVIMYDRY 124
Query: 236 TATLKDATSE-AIRDWVTNVETTHYILGSVAGPHPYPMMVR-----DFHATSIGEMGWET 289
+ E + R+ +T + + + D +G G +
Sbjct: 125 KDDREKMAKEISEREGLTIIPPYDHPHVLAGQGTAAKELFEEVGPLDALFVCLGGGGLLS 184
Query: 290 RCADCMRWWWFKCH 303
A R + C
Sbjct: 185 GSALAARHFAPNCE 198
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 71.9 bits (175), Expect = 7e-15
Identities = 34/173 (19%), Positives = 55/173 (31%), Gaps = 12/173 (6%)
Query: 107 DFQEELSGILRDYV---GRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINN 163
+ E L +LR V + TPL E+L+ I +KRED + K+
Sbjct: 8 EGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRL------DNVILVKREDRQPVHSFKLRG 61
Query: 164 AVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR 223
A K + AG H A AR G++ ++ M + + +R
Sbjct: 62 AYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDA---VR 118
Query: 224 LLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRD 276
G EV + K E + +AG + +
Sbjct: 119 GFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALELLQ 171
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 71.0 bits (173), Expect = 2e-14
Identities = 33/192 (17%), Positives = 57/192 (29%), Gaps = 20/192 (10%)
Query: 121 GRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGA-HKINNAVGQALLA-KRLGKTR 178
G+ TPL R R G ++LK E N K AV +R+ K
Sbjct: 93 GKPTPLV---RS----RLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGS 145
Query: 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTAT 238
++A+ + GVA + V +G + VY+ E L + GA+V +T
Sbjct: 146 LVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLL---GAQVIVDPEAPST 202
Query: 239 LKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWW 298
+ + + E+ ++R
Sbjct: 203 VHLLPRVMKDSKNEGFVHVNQ--------FYNDANFEAHMRGTAREIFVQSRRGGLALRG 254
Query: 299 WFKCHGSLPRIC 310
G+ +
Sbjct: 255 VAGSLGTSGHMS 266
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 69.0 bits (167), Expect = 5e-14
Identities = 24/183 (13%), Positives = 51/183 (27%), Gaps = 7/183 (3%)
Query: 122 RETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIA 181
+TP+ + L++ G +YLK + +G+ KI + G +
Sbjct: 6 VKTPIRDSMALSKMA------GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVC 59
Query: 182 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKD 241
+ AG G+A A + G+ + + + V + L
Sbjct: 60 SS-AGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFELAK 118
Query: 242 ATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWFK 301
A ++ WV ++ + + + C +
Sbjct: 119 ALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQ 178
Query: 302 CHG 304
G
Sbjct: 179 ECG 181
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 66.2 bits (160), Expect = 4e-13
Identities = 28/191 (14%), Positives = 46/191 (24%), Gaps = 12/191 (6%)
Query: 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG 175
+ Y R TPL + L G + LK E L TG+ K A+ +AL L
Sbjct: 13 IAPYTHR-TPLLTSRLLDGLL------GKRLLLKAEHLQKTGSFKARGALSKAL---ALE 62
Query: 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV-RAVHS 234
+ + +G H A G++ +V M + + +
Sbjct: 63 NPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKN 122
Query: 235 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGE-MGWETRCAD 293
+ E + + I G
Sbjct: 123 REEVARALQEETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLL 182
Query: 294 CMRWWWFKCHG 304
K
Sbjct: 183 AGLATAVKALS 193
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 65.7 bits (159), Expect = 6e-13
Identities = 32/203 (15%), Positives = 55/203 (27%), Gaps = 18/203 (8%)
Query: 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKI---NNAVGQALLAK 172
L +G TPL +R+ G ++LK E N G+ K + + +A
Sbjct: 3 LEQTIGN-TPLVKLQRMGPDN------GSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRG 55
Query: 173 RLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232
+ ++ E +G G+A A + A G + + M MR GAE+ V
Sbjct: 56 EIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLM---PDNMSQERRAAMRAYGAELILV 112
Query: 233 HSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGE-----MGW 287
+ Y + + G
Sbjct: 113 TKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSM 172
Query: 288 ETRCADCMRWWWFKCHGSLPRIC 310
T + + I
Sbjct: 173 GTTGTITGVSRFMREQSKPVTIV 195
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 62.4 bits (150), Expect = 1e-11
Identities = 28/184 (15%), Positives = 55/184 (29%), Gaps = 20/184 (10%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAET 183
TPL + E + G +Y K E LN TG+ K A G + +
Sbjct: 29 TPLIPLKGPEEARK----KGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQAVACAS 84
Query: 184 GAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDAT 243
G + A AR G+ IV + A + + +++ G ++
Sbjct: 85 T-GNTAASAAAYAARAGILAIVVLPAGYVALGKVA-----------QSLVHGARIVQVEG 132
Query: 244 SEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWFKCH 303
+ +T T + + V +P+ + ++ + +
Sbjct: 133 NFDDALRLTQKLTEAFPVALVNSVNPHRLE----GQKTLAFEVVDELGDAPHYHALPVGN 188
Query: 304 GSLP 307
Sbjct: 189 AGNI 192
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 61.9 bits (149), Expect = 1e-11
Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 24/196 (12%)
Query: 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG 175
+ +G+ TP+ ++ E +++K E LN G+ K A A+ G
Sbjct: 3 VEGAIGK-TPVVRLAKVVEPD------MAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERG 55
Query: 176 -----KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230
++I E +G G+ A + A G + I+ M AQ E + +
Sbjct: 56 ILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTD 115
Query: 231 AVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETR 290
+ E ++ P VR + T G +E
Sbjct: 116 PER-------RMLAAREEALRLKEELGAFMP----DQFKNPANVRAHYET-TGPELYEAL 163
Query: 291 CADCMRWWWFKCHGSL 306
+ + G
Sbjct: 164 EGRIDAFVYGSGTGGT 179
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 58.7 bits (141), Expect = 2e-10
Identities = 29/204 (14%), Positives = 53/204 (25%), Gaps = 27/204 (13%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKT 177
+ +G TPL + + E G + K E + + K A++ G
Sbjct: 9 ELIGN-TPLVYLNNVAE------GCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLI 61
Query: 178 R----IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233
+ ++ E +G GV A A G + I+ M A + G E+
Sbjct: 62 KPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTE---RRIILLAFGVELVLTD 118
Query: 234 SGT-------------ATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAT 280
A + + N + + G +
Sbjct: 119 PAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGI 178
Query: 281 SIGEMGWETRCADCMRWWWFKCHG 304
G + K +G
Sbjct: 179 GTGGTITGAGKYLKEQNANVKLYG 202
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 55.7 bits (133), Expect = 2e-09
Identities = 28/174 (16%), Positives = 46/174 (26%), Gaps = 23/174 (13%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKIN---NAVGQALLAKRL 174
+G TPL R+ I K E N + + K N + A L
Sbjct: 9 LTIGH-TPLVRLNRIG---------NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVL 58
Query: 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234
+ E G G+A A V A G + + M + + +
Sbjct: 59 KPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 235 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWE 288
++ A D + + + H + G WE
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQF----------SNPANPEIHEKTTGPEIWE 162
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 54.2 bits (129), Expect = 5e-09
Identities = 32/196 (16%), Positives = 56/196 (28%), Gaps = 22/196 (11%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKIN---NAVGQALLAKRL 174
+G TPL + ++ +K E N + + K N V QA L
Sbjct: 8 YSIGN-TPLVRLKHFGH--------NGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 58
Query: 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234
K + I + +G G+A A V A G + + M + + + V V +
Sbjct: 59 TKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGL-----GVNLVLT 113
Query: 235 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADC 294
A + V + + + +L H + G W+
Sbjct: 114 EGAKGMKGAIAKAEEIVASDPSRYVML-----KQFENPANPQIHRETTGPEIWKDTDGKV 168
Query: 295 MRWWWFKCHGSLPRIC 310
G
Sbjct: 169 DVVVAGVGTGGSITGI 184
>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 32.3 bits (73), Expect = 0.060
Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 10/140 (7%)
Query: 175 GKTRIIAETGAGQH-GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233
GK II TGAG G A A G V + + + V ++ LG + A
Sbjct: 11 GKCAII--TGAGAGIGKEIAITFATAG--ASVVVSDINADAANHVVDEIQQLGGQAFACR 66
Query: 234 SGTATLKDATSEAIRDWVTNVETTHYILGSVAG---PHPYPMMVRDFHATSIGEMGWETR 290
+ ++ A+ D+ + IL + AG P P+ M + DF +
Sbjct: 67 CDITSEQEL--SALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFH 124
Query: 291 CADCMRWWWFKCHGSLPRIC 310
+ + K G +
Sbjct: 125 LSQLVAPEMEKNGGGVILTI 144
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 28.3 bits (62), Expect = 0.80
Identities = 13/127 (10%), Positives = 33/127 (25%), Gaps = 6/127 (4%)
Query: 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATL 239
+ G G G A V A G ++ +D+ ++ L +
Sbjct: 7 VTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAG 66
Query: 240 KDATSEAI------RDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCAD 293
+ + + D + V +T ++ ++ + E
Sbjct: 67 DEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTS 126
Query: 294 CMRWWWF 300
++
Sbjct: 127 SLQITSI 133
>d2bsqe1 a.43.1.8 (E:2-70) Trafficking protein A {Neisseria
gonorrhoeae [TaxId: 485]}
Length = 69
Score = 25.9 bits (57), Expect = 1.5
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 94 ELESALHKLA--DDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNG 141
+A+ A R + E+ IL + + + L + G
Sbjct: 11 ATHNAIKFRARAAGRSTEAEIRLILDNIAKAQQTVRLGSMLASIGQEIGG 60
>d1lwuc1 d.171.1.1 (C:138-399) Fibrinogen C-terminal domains {Sea
lamprey (Petromyzon marinus), gamma [TaxId: 7757]}
Length = 262
Score = 27.9 bits (61), Expect = 1.6
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 277 FHATSIGEMGWETRCADCMR--WWWFKCHGS 305
F +E CA+ WW +CH
Sbjct: 173 FSTPERDNDKYEGSCAEQDGSGWWMNRCHAG 203
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB
{Escherichia coli [TaxId: 562]}
Length = 56
Score = 25.5 bits (56), Expect = 1.7
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 85 PETLMYALSELESALHKLADDRDFQEELSGILRD 118
P+ L + ELE + + A + +F E + +RD
Sbjct: 12 PKALQQKIHELEGLMMQHAQNLEF--EEAAQIRD 43
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 27.6 bits (60), Expect = 1.7
Identities = 11/139 (7%), Positives = 25/139 (17%), Gaps = 13/139 (9%)
Query: 184 GAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRM----RLLGAEVR--AVHSGTA 237
G G G + G + ++ + + + A A
Sbjct: 49 GGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQ 108
Query: 238 TLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMR- 296
+E + V+ G + + +
Sbjct: 109 YWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAA 168
Query: 297 ------WWWFKCHGSLPRI 309
G+ P
Sbjct: 169 GKVFKAKNLILAVGAGPGT 187
>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase
subunit F (AhpF), C-terminal domains {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 27.0 bits (58), Expect = 2.1
Identities = 14/126 (11%), Positives = 33/126 (26%), Gaps = 3/126 (2%)
Query: 184 GAGQHGVATATVCARFGLQCIVY---MGAQDMERQALNVFRMRLLGAEVRAVHSGTATLK 240
G+G G A A AR G++ + G Q ++ + + + + +
Sbjct: 8 GSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVD 67
Query: 241 DATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWF 300
+ + I + + G + V + +
Sbjct: 68 EYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVER 127
Query: 301 KCHGSL 306
G +
Sbjct: 128 NRMGEI 133
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 193
Score = 26.8 bits (59), Expect = 2.7
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 185 AGQHGVATATVCARFGLQ---CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235
AG G+ + +R + A D+ QA + +++ + A H+
Sbjct: 105 AGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTK 158
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 27.0 bits (58), Expect = 3.2
Identities = 11/127 (8%), Positives = 26/127 (20%)
Query: 184 GAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDAT 243
GAG G+A A+ G++ ++ + R++ +
Sbjct: 10 GAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQ 69
Query: 244 SEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWFKCH 303
G + + E +
Sbjct: 70 ELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPG 129
Query: 304 GSLPRIC 310
++P
Sbjct: 130 ITVPENY 136
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 212
Score = 26.6 bits (57), Expect = 3.5
Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 3/122 (2%)
Query: 183 TGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDA 242
G G G A A G + + +G++ E+ R + + +A
Sbjct: 7 GGTGNLGKGLALRLATLGHE--IVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEA 64
Query: 243 TSE-AIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWWFK 301
+ + T L ++ + + G R A + +
Sbjct: 65 CDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE 124
Query: 302 CH 303
Sbjct: 125 SE 126
>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2
{Crab-eating macaque (Macaca fascicularis) [TaxId:
9541]}
Length = 161
Score = 25.9 bits (57), Expect = 4.5
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 69 RPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDR--DFQEELSGIL------RDYV 120
R FG K++ MY +S+ + H+L D+ D E + R ++
Sbjct: 54 REGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQDNVREDLYEAADKWVAAVGKDRPFM 113
Query: 121 GRETPLY 127
G + P
Sbjct: 114 GGQKPNL 120
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 221
Score = 25.9 bits (56), Expect = 5.4
Identities = 11/130 (8%), Positives = 24/130 (18%), Gaps = 10/130 (7%)
Query: 184 GAGQHGVATATVCARFGLQCIV-----YMGAQDMERQALNVFRMRLLGAEVRAVHSGTAT 238
G G G A A+ G + +G + + + A
Sbjct: 10 GGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFAN 69
Query: 239 LKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMM-----VRDFHATSIGEMGWETRCAD 293
S D + + ++ + + +
Sbjct: 70 HGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIE 129
Query: 294 CMRWWWFKCH 303
H
Sbjct: 130 GENTVVKGKH 139
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 25.9 bits (55), Expect = 6.5
Identities = 19/124 (15%), Positives = 33/124 (26%), Gaps = 4/124 (3%)
Query: 184 GAGQHGVATATVCARFGLQCIVYMGAQD----MERQALNVFRMRLLGAEVRAVHSGTATL 239
G G G+A A G ++ + + AL + + T L
Sbjct: 7 GGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRAL 66
Query: 240 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADCMRWWW 299
A + R + + + P F A+ I +G R A +
Sbjct: 67 AAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGELFSRR 126
Query: 300 FKCH 303
Sbjct: 127 APEG 130
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 25.6 bits (55), Expect = 6.9
Identities = 15/137 (10%), Positives = 36/137 (26%), Gaps = 12/137 (8%)
Query: 184 GAGQHGVATATVCARFGLQCIV---------YMGAQDMERQALNVFRMRLLGAEVRAVHS 234
G G G+A+A A G + V + + ++ + + A +
Sbjct: 10 GGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYG 69
Query: 235 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCADC 294
+ I++ + + + ++R HA + +
Sbjct: 70 FPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIR-GHAAFTSDPKPTIEVSGK 128
Query: 295 MRW--WWFKCHGSLPRI 309
G +P
Sbjct: 129 KYTAPHILIATGGMPST 145
>d2bmob1 d.17.4.4 (B:1-194) Nitrobenzene dioxygenase beta subunit,
NBDO-beta {Comamonas sp. JS765 [TaxId: 58226]}
Length = 194
Score = 25.3 bits (55), Expect = 7.5
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT 156
+ R + +++A R + ++R GGG + + D
Sbjct: 143 LHRARRENQVDVFYATR-EDKWKRIEGGGIKLVERFVDYPER 183
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 25.7 bits (55), Expect = 7.8
Identities = 19/135 (14%), Positives = 37/135 (27%), Gaps = 9/135 (6%)
Query: 184 GAGQHGVATATVCARFGLQCIV----YMGAQDMERQALNVFRMRLLGAEVRAVHSGTATL 239
G G G+A+ A +G +C + +G + + M A+H
Sbjct: 9 GGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDY 68
Query: 240 KDATSEAIRDWVTNVETTHYILGSVAGPHP-----YPMMVRDFHATSIGEMGWETRCADC 294
T+ +W T + + + + + + V A + E
Sbjct: 69 GFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETI 128
Query: 295 MRWWWFKCHGSLPRI 309
G P
Sbjct: 129 TADHILIATGGRPSH 143
>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 290
Score = 25.6 bits (55), Expect = 8.6
Identities = 13/115 (11%), Positives = 28/115 (24%), Gaps = 7/115 (6%)
Query: 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTA 237
R + +G+ G +A G + A+ A L A + + +
Sbjct: 38 RFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSG 97
Query: 238 TLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHATSIGEMGWETRCA 292
L E ++ T++ + + A
Sbjct: 98 LLSLEAEENALPGFAEALRSYQE-------AAAAGTFLVVEFTTLADYLHLLQAA 145
>d2qtpa1 d.79.9.1 (A:3-171) Uncharacterized protein SPO0826
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 169
Score = 25.1 bits (55), Expect = 9.0
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 247 IRDWVTNVETTHYILGSVAGP 267
IR +E T G P
Sbjct: 2 IRKIAVFIEETRIEAGREISP 22
>d1wjxa_ b.111.1.1 (A:) Small protein B (SmpB) {Thermus thermophilus
[TaxId: 274]}
Length = 120
Score = 24.7 bits (54), Expect = 9.2
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 224 LLGAEVRAVHSGTATLKDATSEAIRD--WVTNVETTHYILGSVAGPHPYPMMVRDFHATS 281
L G EV+++ +G + + ++ N+ Y GS A P H
Sbjct: 23 LKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPRRKRKLLLHKHE 82
Query: 282 IGEMGWETR 290
+ + +
Sbjct: 83 LRRLLGKVE 91
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 23.9 bits (51), Expect = 9.2
Identities = 3/14 (21%), Positives = 3/14 (21%)
Query: 291 CADCMRWWWFKCHG 304
C W C
Sbjct: 35 DPRCHVWQHVGCVI 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.425
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,224,065
Number of extensions: 55471
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 275
Number of HSP's successfully gapped: 54
Length of query: 310
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 225
Effective length of database: 1,240,546
Effective search space: 279122850
Effective search space used: 279122850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)