Query 021614
Match_columns 310
No_of_seqs 227 out of 1948
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:21:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 9.8E-65 2.1E-69 448.1 27.6 298 1-298 58-356 (363)
2 PLN02979 glycolate oxidase 100.0 3.2E-60 6.9E-65 438.6 31.8 303 1-303 59-361 (366)
3 PLN02493 probable peroxisomal 100.0 6.6E-60 1.4E-64 440.1 32.1 301 1-301 60-360 (367)
4 PF01070 FMN_dh: FMN-dependent 100.0 1.6E-57 3.4E-62 426.9 31.2 296 1-296 48-356 (356)
5 PLN02535 glycolate oxidase 100.0 2.2E-57 4.8E-62 423.7 31.1 298 1-301 62-359 (364)
6 cd04736 MDH_FMN Mandelate dehy 100.0 4.1E-57 8.8E-62 421.1 31.8 288 1-291 54-360 (361)
7 PRK11197 lldD L-lactate dehydr 100.0 5.3E-57 1.1E-61 423.0 31.7 295 1-296 60-376 (381)
8 TIGR02708 L_lactate_ox L-lacta 100.0 9.4E-57 2E-61 419.4 32.1 295 1-302 70-365 (367)
9 cd03332 LMO_FMN L-Lactate 2-mo 100.0 1.1E-55 2.3E-60 414.9 32.1 293 1-294 75-382 (383)
10 cd04737 LOX_like_FMN L-Lactate 100.0 2.6E-55 5.7E-60 409.3 31.1 289 1-295 62-351 (351)
11 cd02922 FCB2_FMN Flavocytochro 100.0 3.3E-53 7.2E-58 395.3 33.3 285 1-292 54-343 (344)
12 COG1304 idi Isopentenyl diphos 100.0 1.6E-47 3.4E-52 357.0 23.4 297 1-301 54-354 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 6.4E-44 1.4E-48 329.4 31.6 246 1-292 54-299 (299)
14 PRK05437 isopentenyl pyrophosp 100.0 2.6E-35 5.7E-40 276.8 25.1 255 1-299 50-340 (352)
15 cd02811 IDI-2_FMN Isopentenyl- 100.0 6.9E-35 1.5E-39 271.8 25.5 247 1-292 42-326 (326)
16 TIGR02151 IPP_isom_2 isopenten 100.0 1.5E-34 3.3E-39 270.2 24.9 256 1-297 43-331 (333)
17 PRK05458 guanosine 5'-monophos 99.9 1.1E-24 2.4E-29 201.2 26.6 240 1-300 27-318 (326)
18 PRK10415 tRNA-dihydrouridine s 99.9 2.3E-25 4.9E-30 207.4 21.7 251 4-296 2-285 (321)
19 TIGR01306 GMP_reduct_2 guanosi 99.9 1.3E-24 2.9E-29 199.8 25.0 241 1-301 24-316 (321)
20 cd02808 GltS_FMN Glutamate syn 99.9 1.4E-24 3E-29 207.1 25.5 262 9-297 75-391 (392)
21 TIGR01037 pyrD_sub1_fam dihydr 99.9 7.1E-25 1.5E-29 202.8 22.5 238 1-293 1-298 (300)
22 COG0042 tRNA-dihydrouridine sy 99.9 6.9E-25 1.5E-29 203.8 21.1 252 4-296 3-286 (323)
23 PRK10550 tRNA-dihydrouridine s 99.9 8.4E-24 1.8E-28 195.8 22.8 242 12-295 1-278 (312)
24 TIGR00737 nifR3_yhdG putative 99.9 1E-23 2.2E-28 196.6 23.1 248 5-294 1-281 (319)
25 PRK07259 dihydroorotate dehydr 99.9 4.2E-23 9.1E-28 191.0 24.5 239 1-294 2-299 (301)
26 TIGR00742 yjbN tRNA dihydrouri 99.9 2.1E-23 4.7E-28 193.4 21.9 240 13-296 2-280 (318)
27 cd04739 DHOD_like Dihydroorota 99.9 7.1E-23 1.5E-27 191.1 24.2 238 1-293 2-302 (325)
28 cd04740 DHOD_1B_like Dihydroor 99.9 2.3E-22 5E-27 185.6 25.8 237 2-293 1-295 (296)
29 PRK07565 dihydroorotate dehydr 99.9 1.5E-22 3.2E-27 189.8 22.9 239 1-294 3-305 (334)
30 TIGR01305 GMP_reduct_1 guanosi 99.9 3.6E-22 7.9E-27 182.4 23.7 228 9-293 43-329 (343)
31 PF01207 Dus: Dihydrouridine s 99.9 2.2E-23 4.7E-28 193.3 14.2 241 15-297 1-274 (309)
32 PLN02495 oxidoreductase, actin 99.9 5E-22 1.1E-26 187.6 22.2 246 1-294 11-336 (385)
33 PRK08649 inosine 5-monophospha 99.9 7.5E-22 1.6E-26 185.9 23.2 270 1-297 37-367 (368)
34 PRK11815 tRNA-dihydrouridine s 99.9 1.1E-21 2.4E-26 183.6 23.2 246 7-296 6-290 (333)
35 cd00381 IMPDH IMPDH: The catal 99.9 1.2E-21 2.5E-26 182.7 23.1 239 1-296 23-322 (325)
36 cd02940 DHPD_FMN Dihydropyrimi 99.9 1.3E-21 2.7E-26 180.9 21.2 213 1-254 2-286 (299)
37 COG0167 PyrD Dihydroorotate de 99.9 3.1E-21 6.7E-26 176.5 21.9 178 72-295 105-308 (310)
38 PRK08318 dihydropyrimidine deh 99.9 3.8E-21 8.3E-26 185.6 23.8 188 64-295 101-320 (420)
39 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 3.4E-21 7.3E-26 181.0 21.1 268 3-296 36-368 (369)
40 PRK02506 dihydroorotate dehydr 99.9 1.9E-20 4.1E-25 173.6 21.9 240 1-293 2-306 (310)
41 PF00478 IMPDH: IMP dehydrogen 99.9 7.9E-20 1.7E-24 169.9 22.8 232 6-294 32-336 (352)
42 PRK06843 inosine 5-monophospha 99.9 2E-19 4.4E-24 170.2 24.1 141 153-293 181-381 (404)
43 cd04741 DHOD_1A_like Dihydroor 99.8 2.4E-19 5.3E-24 165.2 22.9 223 3-279 1-294 (294)
44 PLN02826 dihydroorotate dehydr 99.8 8.2E-19 1.8E-23 167.3 26.5 123 164-294 261-407 (409)
45 PRK05286 dihydroorotate dehydr 99.8 2.5E-19 5.4E-24 168.5 22.8 228 1-283 49-344 (344)
46 PRK05096 guanosine 5'-monophos 99.8 3.2E-19 7E-24 163.1 22.3 229 8-293 43-330 (346)
47 PF01645 Glu_synthase: Conserv 99.8 7.1E-19 1.5E-23 164.7 23.0 251 9-285 63-368 (368)
48 cd02801 DUS_like_FMN Dihydrour 99.8 3.1E-19 6.7E-24 158.7 18.0 201 13-255 1-219 (231)
49 cd02911 arch_FMN Archeal FMN-b 99.8 3E-19 6.5E-24 159.1 17.0 188 13-251 1-222 (233)
50 cd02810 DHOD_DHPD_FMN Dihydroo 99.8 2.3E-18 5.1E-23 158.4 22.0 207 3-254 1-277 (289)
51 KOG2335 tRNA-dihydrouridine sy 99.8 1.1E-18 2.3E-23 159.8 15.7 208 5-254 11-238 (358)
52 cd04738 DHOD_2_like Dihydrooro 99.8 9.5E-18 2.1E-22 156.9 21.2 206 1-254 39-314 (327)
53 PRK07107 inosine 5-monophospha 99.8 2.8E-18 6.1E-23 167.8 17.4 141 154-294 271-473 (502)
54 PF01180 DHO_dh: Dihydroorotat 99.8 7.9E-18 1.7E-22 155.4 15.2 224 1-279 2-295 (295)
55 PLN02274 inosine-5'-monophosph 99.8 1.7E-17 3.7E-22 162.6 17.3 143 149-293 272-473 (505)
56 TIGR00736 nifR3_rel_arch TIM-b 99.8 2.3E-17 5.1E-22 145.9 15.7 152 63-254 68-225 (231)
57 TIGR01036 pyrD_sub2 dihydrooro 99.7 1.7E-16 3.6E-21 148.6 20.4 207 1-254 46-322 (335)
58 PTZ00314 inosine-5'-monophosph 99.7 1.2E-16 2.7E-21 156.5 20.0 142 151-292 267-466 (495)
59 COG0069 GltB Glutamate synthas 99.7 2.2E-16 4.8E-21 151.0 21.1 262 8-296 163-479 (485)
60 TIGR01302 IMP_dehydrog inosine 99.7 8.8E-17 1.9E-21 156.3 17.1 141 152-292 251-450 (450)
61 TIGR01303 IMP_DH_rel_1 IMP deh 99.7 1.3E-16 2.9E-21 155.2 17.5 145 150-294 250-457 (475)
62 PRK05567 inosine 5'-monophosph 99.7 4E-16 8.7E-21 153.2 18.2 141 153-293 256-455 (486)
63 TIGR03151 enACPred_II putative 99.7 4.4E-15 9.5E-20 137.5 21.0 184 4-257 6-198 (307)
64 PRK11750 gltB glutamate syntha 99.7 4.6E-15 1E-19 156.6 22.2 254 12-291 859-1166(1485)
65 PRK07807 inosine 5-monophospha 99.6 1.7E-14 3.8E-19 140.5 18.4 143 152-294 254-459 (479)
66 PF03060 NMO: Nitronate monoox 99.6 6.7E-14 1.5E-18 131.1 20.3 189 4-257 6-227 (330)
67 KOG1436 Dihydroorotate dehydro 99.6 1.3E-13 2.9E-18 123.7 17.2 122 165-294 252-397 (398)
68 cd04730 NPD_like 2-Nitropropan 99.5 1.3E-12 2.8E-17 116.6 20.6 187 11-262 2-198 (236)
69 KOG2333 Uncharacterized conser 99.5 2.9E-13 6.3E-18 127.5 15.4 204 12-255 265-496 (614)
70 PRK13523 NADPH dehydrogenase N 99.5 2.6E-12 5.6E-17 120.5 18.9 217 3-254 7-310 (337)
71 KOG2550 IMP dehydrogenase/GMP 99.5 2.2E-13 4.8E-18 126.1 10.6 146 148-293 274-476 (503)
72 cd02803 OYE_like_FMN_family Ol 99.4 6.9E-12 1.5E-16 117.4 17.6 104 150-255 191-317 (327)
73 cd04742 NPD_FabD 2-Nitropropan 99.4 1.8E-11 3.8E-16 116.8 20.2 222 4-256 8-255 (418)
74 PRK06552 keto-hydroxyglutarate 99.4 1.1E-11 2.5E-16 108.8 16.9 170 69-255 18-189 (213)
75 cd04734 OYE_like_3_FMN Old yel 99.4 3E-11 6.5E-16 113.8 19.8 104 150-255 191-321 (343)
76 COG2070 Dioxygenases related t 99.4 1.5E-11 3.3E-16 115.0 16.3 100 155-258 118-222 (336)
77 cd04743 NPD_PKS 2-Nitropropane 99.3 7.7E-11 1.7E-15 108.8 18.5 183 11-257 2-210 (320)
78 cd02932 OYE_YqiM_FMN Old yello 99.3 1.3E-10 2.8E-15 109.3 19.9 105 149-255 203-326 (336)
79 cd04722 TIM_phosphate_binding 99.3 1.3E-10 2.8E-15 99.4 18.0 185 14-250 1-200 (200)
80 TIGR02814 pfaD_fam PfaD family 99.3 2.4E-10 5.3E-15 109.7 20.8 219 10-258 17-262 (444)
81 PRK09140 2-dehydro-3-deoxy-6-p 99.3 1.3E-10 2.8E-15 101.7 17.1 167 72-254 18-184 (206)
82 TIGR00262 trpA tryptophan synt 99.3 2.6E-10 5.7E-15 103.1 19.2 157 72-257 20-235 (256)
83 CHL00200 trpA tryptophan synth 99.3 3.9E-10 8.5E-15 102.1 19.6 157 72-257 25-239 (263)
84 TIGR01182 eda Entner-Doudoroff 99.3 2.3E-10 5E-15 99.5 15.5 169 69-254 13-181 (204)
85 cd04747 OYE_like_5_FMN Old yel 99.2 8.3E-10 1.8E-14 104.4 19.9 103 150-255 194-334 (361)
86 PRK07114 keto-hydroxyglutarate 99.2 2E-10 4.4E-15 101.1 14.3 166 72-253 23-192 (222)
87 PLN02591 tryptophan synthase 99.2 1.1E-09 2.4E-14 98.3 19.2 157 72-257 12-226 (250)
88 COG0159 TrpA Tryptophan syntha 99.2 3.2E-09 7E-14 95.1 20.7 164 64-258 20-242 (265)
89 PRK08255 salicylyl-CoA 5-hydro 99.2 1.3E-09 2.9E-14 112.9 20.6 141 80-255 555-723 (765)
90 PRK13111 trpA tryptophan synth 99.2 3.3E-09 7.2E-14 95.9 20.3 171 72-272 22-253 (258)
91 cd02930 DCR_FMN 2,4-dienoyl-Co 99.2 9.3E-10 2E-14 104.2 17.5 104 150-255 187-312 (353)
92 cd04735 OYE_like_4_FMN Old yel 99.2 2.3E-10 5E-15 108.2 12.8 106 150-255 194-319 (353)
93 PRK01130 N-acetylmannosamine-6 99.2 7.2E-09 1.6E-13 91.7 21.0 97 155-254 109-207 (221)
94 cd02933 OYE_like_FMN Old yello 99.2 8.9E-10 1.9E-14 103.6 16.0 102 150-255 202-320 (338)
95 cd04733 OYE_like_2_FMN Old yel 99.2 7.7E-10 1.7E-14 104.1 15.0 141 79-254 152-327 (338)
96 cd02929 TMADH_HD_FMN Trimethyl 99.2 3.6E-09 7.7E-14 100.7 19.5 103 150-255 200-325 (370)
97 COG0800 Eda 2-keto-3-deoxy-6-p 99.2 5.1E-10 1.1E-14 96.7 12.2 166 72-254 21-186 (211)
98 PRK06015 keto-hydroxyglutarate 99.1 1.7E-09 3.7E-14 93.8 15.4 164 72-253 12-176 (201)
99 cd04729 NanE N-acetylmannosami 99.1 8.8E-09 1.9E-13 91.1 19.3 98 154-254 112-211 (219)
100 cd02931 ER_like_FMN Enoate red 99.1 1.6E-09 3.5E-14 103.5 15.6 104 150-255 201-341 (382)
101 COG1902 NemA NADH:flavin oxido 99.1 1.1E-08 2.3E-13 96.7 20.4 102 152-255 201-324 (363)
102 PRK04180 pyridoxal biosynthesi 99.1 6.7E-10 1.5E-14 100.0 11.5 134 80-254 28-239 (293)
103 PF04131 NanE: Putative N-acet 99.1 9.1E-09 2E-13 87.4 16.7 96 154-254 82-178 (192)
104 PF01081 Aldolase: KDPG and KH 99.1 3.1E-10 6.7E-15 98.1 6.8 165 72-254 16-181 (196)
105 KOG1799 Dihydropyrimidine dehy 99.0 3.3E-10 7.1E-15 103.2 6.5 176 78-296 220-424 (471)
106 PRK13125 trpA tryptophan synth 99.0 4.7E-08 1E-12 87.9 20.5 166 72-271 14-236 (244)
107 PF00290 Trp_syntA: Tryptophan 99.0 1.5E-08 3.3E-13 91.3 15.9 159 72-260 20-237 (259)
108 PRK10605 N-ethylmaleimide redu 99.0 8.4E-08 1.8E-12 91.1 21.8 98 152-255 211-327 (362)
109 cd04724 Tryptophan_synthase_al 99.0 4.6E-08 1E-12 87.8 18.8 156 72-257 10-223 (242)
110 cd00331 IGPS Indole-3-glycerol 99.0 1.5E-08 3.3E-13 89.4 15.4 49 207-255 159-207 (217)
111 cd00452 KDPG_aldolase KDPG and 99.0 1E-08 2.2E-13 88.8 13.5 168 69-254 9-176 (190)
112 TIGR00343 pyridoxal 5'-phospha 99.0 7.1E-08 1.5E-12 86.9 18.7 97 155-254 104-233 (287)
113 KOG2334 tRNA-dihydrouridine sy 98.9 1.7E-08 3.6E-13 94.5 13.4 205 8-254 7-247 (477)
114 PRK00507 deoxyribose-phosphate 98.9 1.3E-08 2.9E-13 89.8 12.2 172 69-251 15-210 (221)
115 PRK07455 keto-hydroxyglutarate 98.9 2.4E-08 5.2E-13 86.2 13.3 170 67-253 15-184 (187)
116 COG3010 NanE Putative N-acetyl 98.9 2.9E-07 6.3E-12 78.8 19.0 87 165-254 126-214 (229)
117 PRK05718 keto-hydroxyglutarate 98.9 5.8E-08 1.3E-12 85.2 15.0 168 69-253 20-187 (212)
118 cd04727 pdxS PdxS is a subunit 98.8 5.3E-08 1.2E-12 87.6 13.2 97 155-254 102-230 (283)
119 PRK00278 trpC indole-3-glycero 98.8 1.7E-07 3.7E-12 85.0 16.2 102 154-255 100-246 (260)
120 COG0274 DeoC Deoxyribose-phosp 98.8 4.9E-08 1.1E-12 85.0 9.7 173 69-251 17-214 (228)
121 cd04731 HisF The cyclase subun 98.7 1.4E-07 3E-12 84.7 12.4 77 176-255 152-229 (243)
122 TIGR00126 deoC deoxyribose-pho 98.7 1.1E-07 2.3E-12 83.4 9.4 171 69-250 11-205 (211)
123 PRK14024 phosphoribosyl isomer 98.6 1.5E-07 3.2E-12 84.5 9.6 77 176-255 149-228 (241)
124 PF00724 Oxidored_FMN: NADH:fl 98.6 4.3E-07 9.4E-12 85.6 12.9 102 152-255 201-327 (341)
125 PRK00748 1-(5-phosphoribosyl)- 98.6 4.8E-07 1E-11 80.6 12.4 77 176-255 149-226 (233)
126 PRK13585 1-(5-phosphoribosyl)- 98.6 1.7E-06 3.6E-11 77.5 16.0 77 176-255 152-228 (241)
127 TIGR00007 phosphoribosylformim 98.6 5.8E-07 1.2E-11 79.9 11.9 77 176-255 148-224 (230)
128 PRK07695 transcriptional regul 98.6 1.5E-06 3.2E-11 75.9 13.6 94 157-254 86-182 (201)
129 cd04728 ThiG Thiazole synthase 98.5 1.4E-06 3E-11 77.2 12.5 78 173-254 131-209 (248)
130 cd04732 HisA HisA. Phosphorib 98.5 1.2E-06 2.5E-11 78.0 12.2 76 177-255 150-225 (234)
131 PF05690 ThiG: Thiazole biosyn 98.5 8.9E-06 1.9E-10 71.4 17.1 195 4-254 1-209 (247)
132 PF00218 IGPS: Indole-3-glycer 98.5 3.4E-06 7.3E-11 76.0 15.0 102 154-255 98-244 (254)
133 PRK00208 thiG thiazole synthas 98.5 1.9E-06 4.1E-11 76.4 12.6 78 173-254 131-209 (250)
134 cd00959 DeoC 2-deoxyribose-5-p 98.5 3.2E-06 6.9E-11 73.9 14.0 91 153-248 103-202 (203)
135 TIGR01304 IMP_DH_rel_2 IMP deh 98.5 7.2E-07 1.6E-11 84.4 10.5 97 148-250 116-217 (369)
136 PRK13587 1-(5-phosphoribosyl)- 98.5 2.5E-06 5.3E-11 76.3 13.1 100 153-254 64-226 (234)
137 TIGR03572 WbuZ glycosyl amidat 98.5 2.2E-06 4.7E-11 76.4 12.1 75 176-253 156-231 (232)
138 TIGR01163 rpe ribulose-phospha 98.5 1.4E-05 3E-10 69.8 16.7 48 206-254 148-198 (210)
139 PRK01033 imidazole glycerol ph 98.5 7.5E-07 1.6E-11 80.8 8.8 77 176-255 155-232 (258)
140 cd04726 KGPDC_HPS 3-Keto-L-gul 98.4 2.6E-06 5.6E-11 74.0 11.8 96 155-254 94-191 (202)
141 COG0107 HisF Imidazoleglycerol 98.4 5.8E-06 1.3E-10 72.1 12.6 117 153-284 62-251 (256)
142 TIGR03128 RuMP_HxlA 3-hexulose 98.4 3.5E-06 7.6E-11 73.6 11.5 96 155-254 93-191 (206)
143 PRK02083 imidazole glycerol ph 98.4 4.2E-06 9.1E-11 75.6 11.7 75 176-255 156-233 (253)
144 PRK08883 ribulose-phosphate 3- 98.4 3.4E-05 7.4E-10 68.2 17.1 138 72-254 8-200 (220)
145 PLN02411 12-oxophytodienoate r 98.4 1.2E-05 2.5E-10 77.2 15.2 101 152-255 217-348 (391)
146 cd00945 Aldolase_Class_I Class 98.4 4.2E-05 9.1E-10 65.7 17.0 172 28-249 13-201 (201)
147 PF00977 His_biosynth: Histidi 98.3 5E-06 1.1E-10 74.0 11.4 99 154-254 62-225 (229)
148 PRK08649 inosine 5-monophospha 98.3 3.2E-06 7E-11 80.2 9.7 99 148-250 115-216 (368)
149 PRK13957 indole-3-glycerol-pho 98.3 3.8E-05 8.3E-10 68.7 16.0 101 154-255 91-236 (247)
150 PRK00043 thiE thiamine-phospha 98.3 1.5E-05 3.2E-10 69.7 13.1 79 174-254 112-193 (212)
151 COG0106 HisA Phosphoribosylfor 98.3 1.7E-05 3.7E-10 70.2 13.0 101 153-255 63-227 (241)
152 PRK07028 bifunctional hexulose 98.3 1.2E-05 2.5E-10 78.3 13.2 95 155-254 98-195 (430)
153 TIGR00735 hisF imidazoleglycer 98.3 6E-06 1.3E-10 74.7 10.1 77 176-255 158-235 (254)
154 cd04723 HisA_HisF Phosphoribos 98.3 1.5E-05 3.3E-10 71.1 12.3 101 153-255 66-224 (233)
155 cd04731 HisF The cyclase subun 98.2 1.4E-05 3E-10 71.8 11.3 76 176-254 30-105 (243)
156 PRK02083 imidazole glycerol ph 98.2 1.8E-05 3.9E-10 71.5 11.6 76 176-254 33-108 (253)
157 PTZ00170 D-ribulose-5-phosphat 98.2 0.00021 4.5E-09 63.6 17.6 154 72-277 15-223 (228)
158 TIGR00735 hisF imidazoleglycer 98.1 1.7E-05 3.8E-10 71.7 10.1 75 177-254 34-108 (254)
159 CHL00162 thiG thiamin biosynth 98.1 1.7E-05 3.6E-10 70.4 9.4 78 174-255 146-224 (267)
160 PRK14114 1-(5-phosphoribosyl)- 98.1 3.5E-05 7.6E-10 69.1 11.2 100 153-255 62-229 (241)
161 PRK05848 nicotinate-nucleotide 98.1 5.1E-05 1.1E-09 69.1 12.3 88 154-253 169-261 (273)
162 PRK04128 1-(5-phosphoribosyl)- 98.1 3.9E-05 8.6E-10 68.3 11.2 102 153-255 61-217 (228)
163 COG0134 TrpC Indole-3-glycerol 98.1 0.00018 3.8E-09 64.5 15.2 170 72-255 65-242 (254)
164 cd00564 TMP_TenI Thiamine mono 98.1 6.1E-05 1.3E-09 64.5 12.0 78 174-254 103-183 (196)
165 PRK07226 fructose-bisphosphate 98.1 0.00011 2.4E-09 66.9 14.2 87 157-254 131-236 (267)
166 cd00956 Transaldolase_FSA Tran 98.1 0.00072 1.6E-08 59.5 18.5 174 29-258 7-194 (211)
167 PLN02334 ribulose-phosphate 3- 98.0 0.00028 6.2E-09 62.7 16.1 95 176-278 128-225 (229)
168 cd00958 DhnA Class I fructose- 98.0 0.00017 3.8E-09 64.2 14.5 83 162-255 119-220 (235)
169 TIGR01919 hisA-trpF 1-(5-phosp 98.0 8.7E-05 1.9E-09 66.7 12.0 99 154-254 63-230 (243)
170 KOG0399 Glutamate synthase [Am 98.0 3.6E-05 7.9E-10 80.1 10.6 151 143-293 1070-1269(2142)
171 PRK06512 thiamine-phosphate py 98.0 0.00012 2.6E-09 64.8 12.7 95 157-254 100-197 (221)
172 PRK09427 bifunctional indole-3 98.0 9.1E-05 2E-09 72.2 12.6 128 154-291 99-271 (454)
173 TIGR00875 fsa_talC_mipB fructo 98.0 0.002 4.3E-08 56.7 19.8 173 29-257 8-193 (213)
174 COG0036 Rpe Pentose-5-phosphat 98.0 0.00052 1.1E-08 60.1 15.8 137 72-253 12-201 (220)
175 cd00429 RPE Ribulose-5-phospha 98.0 0.00052 1.1E-08 59.7 16.1 69 185-254 126-199 (211)
176 PRK13802 bifunctional indole-3 98.0 0.00024 5.2E-09 72.5 15.4 167 81-255 75-246 (695)
177 cd04732 HisA HisA. Phosphorib 97.9 5.8E-05 1.2E-09 67.1 9.8 76 176-254 32-107 (234)
178 COG0269 SgbH 3-hexulose-6-phos 97.9 0.00025 5.3E-09 61.7 13.2 200 64-276 3-213 (217)
179 PRK08745 ribulose-phosphate 3- 97.9 0.0011 2.4E-08 58.7 17.6 137 72-253 12-203 (223)
180 PF01791 DeoC: DeoC/LacD famil 97.9 8.1E-05 1.8E-09 66.5 10.5 96 154-253 111-234 (236)
181 PRK00748 1-(5-phosphoribosyl)- 97.9 0.00013 2.8E-09 64.9 11.7 76 176-254 33-108 (233)
182 PRK05283 deoxyribose-phosphate 97.9 0.00016 3.5E-09 65.0 12.1 100 149-254 113-227 (257)
183 PRK04302 triosephosphate isome 97.9 0.00052 1.1E-08 60.8 15.3 97 156-255 106-208 (223)
184 PF04481 DUF561: Protein of un 97.9 0.0013 2.8E-08 57.2 16.3 169 72-254 23-219 (242)
185 PLN02460 indole-3-glycerol-pho 97.9 0.00058 1.3E-08 63.7 15.1 172 73-255 139-323 (338)
186 TIGR00693 thiE thiamine-phosph 97.9 0.00026 5.7E-09 61.2 12.2 80 173-254 103-185 (196)
187 PRK02615 thiamine-phosphate py 97.9 0.00026 5.7E-09 66.7 12.9 94 158-254 231-327 (347)
188 PRK06806 fructose-bisphosphate 97.9 0.0093 2E-07 54.7 22.8 79 174-255 153-236 (281)
189 PTZ00314 inosine-5'-monophosph 97.9 0.0032 6.9E-08 62.4 21.0 67 177-249 244-310 (495)
190 COG0352 ThiE Thiamine monophos 97.8 0.00046 9.9E-09 60.5 13.2 96 157-255 94-192 (211)
191 PRK14024 phosphoribosyl isomer 97.8 0.00018 3.9E-09 64.6 10.9 75 176-254 35-109 (241)
192 cd00405 PRAI Phosphoribosylant 97.8 0.0017 3.7E-08 56.6 16.8 95 155-254 86-186 (203)
193 TIGR00734 hisAF_rel hisA/hisF 97.8 0.00011 2.4E-09 65.1 9.2 71 179-255 147-219 (221)
194 TIGR01769 GGGP geranylgeranylg 97.8 0.00065 1.4E-08 59.4 13.5 66 179-249 140-205 (205)
195 PRK05742 nicotinate-nucleotide 97.8 0.00041 9E-09 63.4 12.1 87 155-253 178-265 (277)
196 PRK07428 nicotinate-nucleotide 97.8 0.00044 9.5E-09 63.5 12.3 90 154-254 183-276 (288)
197 COG2022 ThiG Uncharacterized e 97.8 0.00026 5.6E-09 62.0 10.1 77 174-254 139-216 (262)
198 PRK09722 allulose-6-phosphate 97.8 0.0034 7.4E-08 55.8 17.5 119 153-276 47-220 (229)
199 cd01573 modD_like ModD; Quinol 97.7 0.00041 8.8E-09 63.4 11.9 91 154-252 171-261 (272)
200 COG0214 SNZ1 Pyridoxine biosyn 97.7 0.00043 9.4E-09 60.6 11.1 99 155-255 67-243 (296)
201 PRK08005 epimerase; Validated 97.7 0.0024 5.2E-08 56.0 16.0 136 72-253 9-195 (210)
202 PRK13307 bifunctional formalde 97.7 0.0027 5.8E-08 60.8 17.3 93 156-254 268-363 (391)
203 TIGR00078 nadC nicotinate-nucl 97.7 0.0006 1.3E-08 62.0 12.3 87 155-252 166-253 (265)
204 PRK11840 bifunctional sulfur c 97.7 0.00031 6.7E-09 64.9 10.4 78 173-254 205-283 (326)
205 cd01568 QPRTase_NadC Quinolina 97.7 0.00061 1.3E-08 62.2 12.3 86 155-252 169-258 (269)
206 PF02581 TMP-TENI: Thiamine mo 97.6 0.00057 1.2E-08 58.5 10.7 77 173-252 102-180 (180)
207 PRK01362 putative translaldola 97.6 0.016 3.4E-07 51.1 19.7 172 30-257 9-193 (214)
208 TIGR01859 fruc_bis_ald_ fructo 97.6 0.029 6.4E-07 51.5 22.1 108 174-285 153-279 (282)
209 PRK12656 fructose-6-phosphate 97.6 0.024 5.2E-07 50.2 20.4 172 30-257 9-197 (222)
210 TIGR01949 AroFGH_arch predicte 97.6 0.00087 1.9E-08 60.7 11.7 87 157-254 128-232 (258)
211 cd01572 QPRTase Quinolinate ph 97.6 0.00085 1.8E-08 61.1 11.6 88 155-253 170-258 (268)
212 cd04727 pdxS PdxS is a subunit 97.6 0.0031 6.8E-08 57.2 14.9 84 154-248 54-138 (283)
213 TIGR02129 hisA_euk phosphoribo 97.6 0.0012 2.7E-08 59.3 12.2 42 153-194 64-105 (253)
214 PRK13585 1-(5-phosphoribosyl)- 97.6 0.00046 1E-08 61.7 9.6 76 176-254 35-110 (241)
215 KOG4175 Tryptophan synthase al 97.6 0.0041 8.9E-08 53.4 14.4 155 72-255 28-241 (268)
216 TIGR00259 thylakoid_BtpA membr 97.6 0.004 8.7E-08 56.2 15.3 70 177-253 161-231 (257)
217 TIGR01182 eda Entner-Doudoroff 97.6 0.00076 1.6E-08 58.9 10.3 84 150-248 43-127 (204)
218 PRK08072 nicotinate-nucleotide 97.6 0.0011 2.3E-08 60.7 11.7 89 154-253 175-264 (277)
219 TIGR03572 WbuZ glycosyl amidat 97.5 0.00069 1.5E-08 60.3 10.2 76 176-254 33-108 (232)
220 PRK12653 fructose-6-phosphate 97.5 0.022 4.8E-07 50.3 19.5 173 29-257 8-195 (220)
221 COG0107 HisF Imidazoleglycerol 97.5 0.00078 1.7E-08 59.0 9.8 76 176-254 33-108 (256)
222 PRK13587 1-(5-phosphoribosyl)- 97.5 0.00067 1.5E-08 60.6 9.7 75 177-254 35-110 (234)
223 PRK04128 1-(5-phosphoribosyl)- 97.5 0.00052 1.1E-08 61.1 9.0 73 177-253 34-106 (228)
224 PLN02274 inosine-5'-monophosph 97.5 0.013 2.8E-07 58.2 19.6 68 176-249 250-317 (505)
225 PF04131 NanE: Putative N-acet 97.5 0.0013 2.8E-08 56.3 10.8 88 154-249 21-119 (192)
226 TIGR00343 pyridoxal 5'-phospha 97.5 0.0019 4.2E-08 58.6 12.2 84 154-248 56-140 (287)
227 PRK05581 ribulose-phosphate 3- 97.5 0.0043 9.4E-08 54.5 14.5 96 156-254 101-203 (220)
228 PF00834 Ribul_P_3_epim: Ribul 97.5 0.0015 3.3E-08 57.0 11.3 99 154-253 46-198 (201)
229 PRK12655 fructose-6-phosphate 97.5 0.027 5.8E-07 49.8 19.2 187 29-271 8-211 (220)
230 TIGR00007 phosphoribosylformim 97.5 0.002 4.3E-08 57.2 12.1 76 176-254 31-106 (230)
231 TIGR02129 hisA_euk phosphoribo 97.5 0.00069 1.5E-08 60.9 8.9 69 176-254 41-109 (253)
232 PRK08385 nicotinate-nucleotide 97.5 0.0018 4E-08 59.1 11.8 87 155-253 171-263 (278)
233 PRK04169 geranylgeranylglycery 97.5 0.0013 2.9E-08 58.5 10.6 66 184-254 152-218 (232)
234 PRK06106 nicotinate-nucleotide 97.4 0.002 4.3E-08 59.0 11.9 88 154-253 181-270 (281)
235 PF01729 QRPTase_C: Quinolinat 97.4 0.0018 3.9E-08 54.9 10.9 92 154-254 67-160 (169)
236 PRK12376 putative translaldola 97.4 0.063 1.4E-06 48.0 21.1 177 29-257 13-207 (236)
237 PRK01033 imidazole glycerol ph 97.4 0.002 4.3E-08 58.5 11.6 76 176-254 33-108 (258)
238 PRK03512 thiamine-phosphate py 97.4 0.0041 8.8E-08 54.7 13.0 79 174-254 110-191 (211)
239 PRK06801 hypothetical protein; 97.4 0.032 7E-07 51.3 19.1 78 175-255 157-239 (286)
240 PRK06559 nicotinate-nucleotide 97.4 0.0023 5E-08 58.7 11.3 88 154-253 184-273 (290)
241 cd04723 HisA_HisF Phosphoribos 97.3 0.0012 2.7E-08 58.8 9.2 74 176-253 38-111 (233)
242 PRK13586 1-(5-phosphoribosyl)- 97.3 0.0013 2.9E-08 58.6 9.2 72 177-254 150-223 (232)
243 PRK12290 thiE thiamine-phospha 97.3 0.0039 8.5E-08 60.1 12.8 95 159-254 292-397 (437)
244 PLN02446 (5-phosphoribosyl)-5- 97.3 0.003 6.6E-08 57.1 11.4 74 175-253 164-242 (262)
245 PRK06552 keto-hydroxyglutarate 97.3 0.0023 4.9E-08 56.4 10.1 83 151-248 49-135 (213)
246 PF00977 His_biosynth: Histidi 97.3 0.0015 3.2E-08 58.2 9.0 76 176-254 32-107 (229)
247 PLN02898 HMP-P kinase/thiamin- 97.3 0.0042 9.1E-08 61.7 13.1 94 158-254 381-480 (502)
248 PRK06543 nicotinate-nucleotide 97.3 0.0038 8.1E-08 57.1 11.4 88 154-253 180-269 (281)
249 PF03437 BtpA: BtpA family; I 97.3 0.0089 1.9E-07 53.9 13.6 70 177-254 162-232 (254)
250 PRK06096 molybdenum transport 97.3 0.024 5.2E-07 52.0 16.6 86 154-251 177-266 (284)
251 TIGR02134 transald_staph trans 97.2 0.14 3E-06 45.8 22.1 177 29-257 13-207 (236)
252 TIGR01334 modD putative molybd 97.2 0.026 5.5E-07 51.7 16.4 87 154-252 176-266 (277)
253 cd02812 PcrB_like PcrB_like pr 97.2 0.0023 4.9E-08 56.5 8.9 69 179-254 141-209 (219)
254 PRK06015 keto-hydroxyglutarate 97.2 0.0038 8.1E-08 54.4 10.0 83 151-248 40-123 (201)
255 KOG1606 Stationary phase-induc 97.2 0.0032 7E-08 54.4 9.2 36 219-254 206-243 (296)
256 PRK13586 1-(5-phosphoribosyl)- 97.2 0.0055 1.2E-07 54.7 11.2 75 176-254 33-107 (232)
257 PF01081 Aldolase: KDPG and KH 97.1 0.0029 6.2E-08 54.9 9.0 83 151-248 44-127 (196)
258 PRK09016 quinolinate phosphori 97.1 0.005 1.1E-07 56.6 11.0 87 154-252 196-283 (296)
259 PRK14114 1-(5-phosphoribosyl)- 97.1 0.0034 7.5E-08 56.3 9.6 75 176-254 33-107 (241)
260 PRK07896 nicotinate-nucleotide 97.1 0.007 1.5E-07 55.6 11.4 88 154-253 187-278 (289)
261 PF01884 PcrB: PcrB family; I 97.1 0.0048 1E-07 54.7 9.9 67 184-255 151-217 (230)
262 PRK08999 hypothetical protein; 97.1 0.0025 5.5E-08 59.2 8.5 76 174-252 234-311 (312)
263 PRK06978 nicotinate-nucleotide 97.0 0.0095 2.1E-07 54.7 11.5 87 155-253 194-281 (294)
264 PLN02446 (5-phosphoribosyl)-5- 97.0 0.0044 9.6E-08 56.0 9.1 71 176-254 46-116 (262)
265 PF09370 TIM-br_sig_trns: TIM- 97.0 0.034 7.5E-07 50.1 14.2 184 32-252 26-249 (268)
266 TIGR01919 hisA-trpF 1-(5-phosp 96.9 0.0062 1.3E-07 54.8 9.6 74 177-254 35-108 (243)
267 PRK13813 orotidine 5'-phosphat 96.9 0.0043 9.3E-08 54.5 8.4 117 153-276 43-213 (215)
268 TIGR01768 GGGP-family geranylg 96.9 0.0082 1.8E-07 53.1 9.6 66 185-254 148-213 (223)
269 PRK08227 autoinducer 2 aldolas 96.9 0.029 6.3E-07 50.9 13.3 84 157-254 132-231 (264)
270 cd00452 KDPG_aldolase KDPG and 96.8 0.013 2.8E-07 50.5 10.5 82 153-249 42-124 (190)
271 cd03319 L-Ala-DL-Glu_epimerase 96.8 0.065 1.4E-06 49.9 15.8 127 65-251 126-260 (316)
272 PRK08091 ribulose-phosphate 3- 96.8 0.055 1.2E-06 48.1 14.4 96 155-253 107-211 (228)
273 PLN02716 nicotinate-nucleotide 96.8 0.016 3.4E-07 53.6 11.1 94 155-253 188-294 (308)
274 PRK07114 keto-hydroxyglutarate 96.8 0.0098 2.1E-07 52.6 9.3 81 153-248 53-138 (222)
275 PRK07315 fructose-bisphosphate 96.8 0.045 9.7E-07 50.6 14.0 79 174-254 154-237 (293)
276 PRK05567 inosine 5'-monophosph 96.8 0.26 5.7E-06 48.8 20.4 68 176-249 230-297 (486)
277 PRK14057 epimerase; Provisiona 96.7 0.078 1.7E-06 47.8 15.0 77 175-253 144-225 (254)
278 KOG4201 Anthranilate synthase 96.7 0.022 4.7E-07 49.6 10.8 80 173-255 193-272 (289)
279 PLN02617 imidazole glycerol ph 96.7 0.007 1.5E-07 60.4 8.9 75 176-255 441-518 (538)
280 cd04728 ThiG Thiazole synthase 96.7 0.0076 1.6E-07 53.7 8.0 107 64-194 91-205 (248)
281 PLN02617 imidazole glycerol ph 96.7 0.01 2.2E-07 59.3 9.7 76 177-254 271-359 (538)
282 cd00381 IMPDH IMPDH: The catal 96.7 0.022 4.8E-07 53.4 11.4 68 176-249 96-163 (325)
283 cd04729 NanE N-acetylmannosami 96.7 0.11 2.3E-06 45.8 15.1 90 155-249 50-150 (219)
284 PRK05718 keto-hydroxyglutarate 96.7 0.021 4.5E-07 50.3 10.4 82 152-248 52-134 (212)
285 KOG3111 D-ribulose-5-phosphate 96.6 0.088 1.9E-06 45.1 13.2 51 220-277 169-219 (224)
286 COG3010 NanE Putative N-acetyl 96.6 0.099 2.1E-06 45.3 13.6 88 154-248 55-153 (229)
287 PRK06843 inosine 5-monophospha 96.5 0.013 2.8E-07 56.3 8.7 67 177-249 156-222 (404)
288 PRK13306 ulaD 3-keto-L-gulonat 96.5 0.07 1.5E-06 47.1 12.8 96 175-277 118-213 (216)
289 PRK00208 thiG thiazole synthas 96.5 0.012 2.7E-07 52.4 8.0 107 64-194 91-205 (250)
290 PF00478 IMPDH: IMP dehydrogen 96.5 0.024 5.2E-07 53.5 10.3 68 176-249 110-177 (352)
291 PRK07998 gatY putative fructos 96.5 0.69 1.5E-05 42.5 19.7 110 174-285 153-278 (283)
292 PRK11750 gltB glutamate syntha 96.5 0.032 6.9E-07 61.0 12.3 118 178-295 602-733 (1485)
293 COG0135 TrpF Phosphoribosylant 96.4 0.34 7.3E-06 42.5 16.3 92 153-252 86-186 (208)
294 PRK09140 2-dehydro-3-deoxy-6-p 96.4 0.037 8E-07 48.5 10.3 81 153-248 48-130 (206)
295 COG0800 Eda 2-keto-3-deoxy-6-p 96.4 0.016 3.5E-07 50.5 7.8 83 150-247 48-131 (211)
296 PRK13397 3-deoxy-7-phosphohept 96.3 0.75 1.6E-05 41.4 19.6 178 29-252 30-222 (250)
297 COG0434 SgcQ Predicted TIM-bar 96.3 0.19 4.1E-06 44.6 14.1 48 203-254 190-237 (263)
298 PRK00230 orotidine 5'-phosphat 96.3 0.04 8.6E-07 49.1 10.2 43 154-196 43-90 (230)
299 PRK09517 multifunctional thiam 96.3 0.065 1.4E-06 55.9 13.2 96 158-254 92-199 (755)
300 PLN02591 tryptophan synthase 96.3 0.096 2.1E-06 47.3 12.5 41 154-194 178-219 (250)
301 COG0106 HisA Phosphoribosylfor 96.2 0.04 8.6E-07 49.1 9.7 74 176-253 34-108 (241)
302 PF03932 CutC: CutC family; I 96.2 0.079 1.7E-06 46.2 11.2 124 70-246 66-196 (201)
303 CHL00200 trpA tryptophan synth 96.2 0.12 2.7E-06 46.9 12.8 42 153-194 190-232 (263)
304 cd04739 DHOD_like Dihydroorota 96.2 0.12 2.5E-06 48.6 13.1 151 11-194 99-267 (325)
305 COG0157 NadC Nicotinate-nucleo 96.2 0.067 1.4E-06 48.5 10.9 87 155-252 176-265 (280)
306 TIGR01302 IMP_dehydrog inosine 96.1 0.024 5.2E-07 55.6 8.6 68 176-249 226-293 (450)
307 PRK12595 bifunctional 3-deoxy- 96.1 0.95 2.1E-05 43.1 18.9 96 154-252 215-325 (360)
308 TIGR00736 nifR3_rel_arch TIM-b 96.0 0.067 1.5E-06 47.6 10.1 42 152-193 177-220 (231)
309 PRK06852 aldolase; Validated 96.0 0.11 2.3E-06 48.2 11.6 89 161-254 163-270 (304)
310 TIGR01305 GMP_reduct_1 guanosi 96.0 0.068 1.5E-06 49.9 10.3 68 176-249 109-178 (343)
311 cd00331 IGPS Indole-3-glycerol 96.0 0.032 6.9E-07 49.0 7.9 71 176-252 34-104 (217)
312 TIGR02320 PEP_mutase phosphoen 96.0 0.86 1.9E-05 42.0 17.4 152 64-255 80-246 (285)
313 PRK01130 N-acetylmannosamine-6 96.0 0.13 2.8E-06 45.3 11.7 91 154-249 45-146 (221)
314 PRK12858 tagatose 1,6-diphosph 95.9 0.067 1.5E-06 50.4 10.3 74 179-255 190-282 (340)
315 PRK11572 copper homeostasis pr 95.9 0.22 4.8E-06 44.7 12.8 126 70-249 67-198 (248)
316 cd02810 DHOD_DHPD_FMN Dihydroo 95.8 0.16 3.4E-06 46.6 12.1 155 11-193 98-272 (289)
317 CHL00162 thiG thiamin biosynth 95.8 0.028 6E-07 50.3 6.7 106 64-193 105-218 (267)
318 PRK09250 fructose-bisphosphate 95.8 0.17 3.7E-06 47.5 12.1 76 179-254 223-323 (348)
319 PF01207 Dus: Dihydrouridine s 95.7 0.066 1.4E-06 49.8 9.2 88 62-193 122-213 (309)
320 KOG2335 tRNA-dihydrouridine sy 95.7 0.18 4E-06 47.2 11.9 89 62-192 141-232 (358)
321 PRK07107 inosine 5-monophospha 95.6 0.056 1.2E-06 53.7 8.8 68 177-249 245-312 (502)
322 TIGR02313 HpaI-NOT-DapA 2,4-di 95.6 0.09 2E-06 48.6 9.6 93 179-274 27-124 (294)
323 cd03315 MLE_like Muconate lact 95.6 0.63 1.4E-05 42.1 15.0 118 73-249 84-210 (265)
324 TIGR00734 hisAF_rel hisA/hisF 95.6 0.074 1.6E-06 47.1 8.6 72 176-253 39-112 (221)
325 PLN02417 dihydrodipicolinate s 95.6 0.11 2.4E-06 47.6 10.1 92 179-273 28-124 (280)
326 PF05690 ThiG: Thiazole biosyn 95.6 0.034 7.3E-07 49.2 6.2 40 154-193 164-204 (247)
327 PRK07807 inosine 5-monophospha 95.6 0.068 1.5E-06 52.8 9.1 66 177-248 230-295 (479)
328 PRK05096 guanosine 5'-monophos 95.5 0.13 2.7E-06 48.2 10.1 68 176-249 110-179 (346)
329 TIGR01303 IMP_DH_rel_1 IMP deh 95.5 0.073 1.6E-06 52.5 9.2 68 176-249 227-294 (475)
330 TIGR01306 GMP_reduct_2 guanosi 95.5 0.19 4.1E-06 46.9 11.4 78 166-249 83-165 (321)
331 cd00951 KDGDH 5-dehydro-4-deox 95.5 0.1 2.3E-06 48.0 9.7 91 179-273 27-122 (289)
332 COG1830 FbaB DhnA-type fructos 95.5 0.29 6.3E-06 44.2 12.0 84 160-254 138-242 (265)
333 PRK03620 5-dehydro-4-deoxygluc 95.5 0.11 2.4E-06 48.2 9.7 92 179-274 34-130 (303)
334 PRK07565 dihydroorotate dehydr 95.4 0.23 4.9E-06 46.8 11.9 95 154-250 90-198 (334)
335 PF04898 Glu_syn_central: Glut 95.4 0.19 4.1E-06 46.1 10.8 119 177-295 146-279 (287)
336 cd00952 CHBPH_aldolase Trans-o 95.4 0.12 2.5E-06 48.2 9.7 92 179-273 35-131 (309)
337 COG1954 GlpP Glycerol-3-phosph 95.4 0.33 7.2E-06 40.8 11.2 108 30-194 65-174 (181)
338 cd03316 MR_like Mandelate race 95.4 0.28 6.2E-06 46.3 12.4 123 74-249 139-270 (357)
339 PRK03170 dihydrodipicolinate s 95.4 2.2 4.8E-05 39.2 20.5 183 12-254 6-210 (292)
340 cd00408 DHDPS-like Dihydrodipi 95.3 0.15 3.3E-06 46.5 10.1 92 179-273 24-120 (281)
341 cd02931 ER_like_FMN Enoate red 95.3 0.63 1.4E-05 44.7 14.5 160 3-194 5-171 (382)
342 PLN02460 indole-3-glycerol-pho 95.2 0.084 1.8E-06 49.5 8.0 94 148-250 160-259 (338)
343 PRK13957 indole-3-glycerol-pho 95.2 0.14 3E-06 46.1 9.1 71 177-253 65-135 (247)
344 PLN02535 glycolate oxidase 95.2 0.15 3.4E-06 48.4 9.8 91 153-249 114-251 (364)
345 PRK08185 hypothetical protein; 95.2 0.83 1.8E-05 42.0 14.3 109 175-285 150-277 (283)
346 COG1954 GlpP Glycerol-3-phosph 95.2 1.4 3.1E-05 37.1 14.3 61 179-250 114-174 (181)
347 TIGR00683 nanA N-acetylneurami 95.1 0.18 3.8E-06 46.5 10.0 92 179-273 27-124 (290)
348 TIGR03569 NeuB_NnaB N-acetylne 95.1 0.62 1.3E-05 43.8 13.5 143 72-244 12-161 (329)
349 COG0134 TrpC Indole-3-glycerol 95.0 0.069 1.5E-06 48.0 6.6 95 148-251 87-185 (254)
350 TIGR03249 KdgD 5-dehydro-4-deo 95.0 0.19 4.1E-06 46.5 9.6 92 179-274 32-128 (296)
351 PF04309 G3P_antiterm: Glycero 95.0 0.016 3.4E-07 49.3 2.3 139 72-254 27-174 (175)
352 cd00516 PRTase_typeII Phosphor 94.9 0.32 7E-06 44.4 11.0 95 155-254 170-272 (281)
353 COG0329 DapA Dihydrodipicolina 94.9 0.23 5E-06 46.0 10.0 77 179-255 31-112 (299)
354 TIGR01037 pyrD_sub1_fam dihydr 94.8 0.15 3.3E-06 47.1 8.7 104 64-193 159-263 (300)
355 PRK07709 fructose-bisphosphate 94.8 0.99 2.1E-05 41.5 13.8 110 174-285 156-282 (285)
356 PRK10550 tRNA-dihydrouridine s 94.8 0.44 9.5E-06 44.4 11.5 87 64-193 135-224 (312)
357 PRK11840 bifunctional sulfur c 94.7 0.12 2.7E-06 48.0 7.6 106 64-193 165-278 (326)
358 cd04738 DHOD_2_like Dihydrooro 94.7 0.093 2E-06 49.2 7.0 104 63-193 203-309 (327)
359 cd00408 DHDPS-like Dihydrodipi 94.7 3.3 7.1E-05 37.6 22.9 181 13-253 3-205 (281)
360 PRK13802 bifunctional indole-3 94.7 0.22 4.8E-06 51.2 10.0 89 153-250 99-188 (695)
361 cd00950 DHDPS Dihydrodipicolin 94.7 0.3 6.4E-06 44.7 10.1 92 179-273 27-123 (284)
362 TIGR00674 dapA dihydrodipicoli 94.6 0.32 6.9E-06 44.6 10.1 92 179-273 25-121 (285)
363 PLN02979 glycolate oxidase 94.6 0.25 5.3E-06 46.9 9.3 93 152-250 110-252 (366)
364 PRK05286 dihydroorotate dehydr 94.6 0.094 2E-06 49.6 6.6 104 63-193 212-318 (344)
365 COG2022 ThiG Uncharacterized e 94.6 0.14 3E-06 45.3 7.0 106 64-193 98-211 (262)
366 cd00954 NAL N-Acetylneuraminic 94.5 0.29 6.3E-06 45.0 9.7 93 179-274 27-125 (288)
367 PRK04147 N-acetylneuraminate l 94.5 0.29 6.3E-06 45.1 9.7 92 179-273 30-127 (293)
368 cd03174 DRE_TIM_metallolyase D 94.4 2.7 5.8E-05 37.6 15.7 154 74-274 17-187 (265)
369 COG1646 Predicted phosphate-bi 94.4 0.074 1.6E-06 46.9 5.1 63 185-254 163-225 (240)
370 PRK05458 guanosine 5'-monophos 94.4 0.51 1.1E-05 44.3 11.0 67 177-249 100-168 (326)
371 cd02940 DHPD_FMN Dihydropyrimi 94.4 0.37 8E-06 44.6 10.1 111 63-194 169-282 (299)
372 PRK07259 dihydroorotate dehydr 94.4 0.35 7.6E-06 44.7 9.9 43 151-193 220-263 (301)
373 cd04740 DHOD_1B_like Dihydroor 94.3 0.51 1.1E-05 43.4 10.9 44 150-193 216-260 (296)
374 TIGR01769 GGGP geranylgeranylg 94.3 0.29 6.2E-06 42.8 8.6 39 154-192 165-204 (205)
375 cd04726 KGPDC_HPS 3-Keto-L-gul 94.3 0.89 1.9E-05 39.1 11.7 126 66-249 2-133 (202)
376 PF00701 DHDPS: Dihydrodipicol 94.3 0.25 5.4E-06 45.4 8.6 91 178-271 27-122 (289)
377 cd02801 DUS_like_FMN Dihydrour 94.3 0.58 1.2E-05 41.2 10.7 41 153-193 171-213 (231)
378 cd04741 DHOD_1A_like Dihydroor 94.2 0.29 6.2E-06 45.3 8.9 110 63-194 158-273 (294)
379 cd01571 NAPRTase_B Nicotinate 94.2 0.37 7.9E-06 44.8 9.6 94 155-254 172-278 (302)
380 COG3142 CutC Uncharacterized p 94.0 1.5 3.2E-05 38.8 12.3 120 72-244 69-195 (241)
381 PF00724 Oxidored_FMN: NADH:fl 93.9 1.1 2.4E-05 42.2 12.4 162 3-197 6-173 (341)
382 PRK03170 dihydrodipicolinate s 93.8 0.49 1.1E-05 43.5 9.7 92 179-273 28-124 (292)
383 PLN02493 probable peroxisomal 93.8 0.41 8.9E-06 45.6 9.2 93 152-250 111-253 (367)
384 cd00439 Transaldolase Transald 93.8 5 0.00011 36.3 17.9 98 155-256 130-241 (252)
385 PRK06512 thiamine-phosphate py 93.8 2.7 5.9E-05 37.1 13.9 42 153-194 152-193 (221)
386 COG0167 PyrD Dihydroorotate de 93.7 0.44 9.5E-06 44.3 9.1 107 63-194 162-271 (310)
387 PRK08318 dihydropyrimidine deh 93.7 0.44 9.5E-06 46.3 9.5 45 150-194 235-283 (420)
388 TIGR00262 trpA tryptophan synt 93.7 0.68 1.5E-05 41.9 10.1 42 153-194 186-228 (256)
389 PRK10415 tRNA-dihydrouridine s 93.6 0.99 2.1E-05 42.2 11.4 41 153-193 182-224 (321)
390 cd00957 Transaldolase_TalAB Tr 93.6 0.73 1.6E-05 42.9 10.3 100 153-257 134-251 (313)
391 TIGR00737 nifR3_yhdG putative 93.6 0.9 1.9E-05 42.4 11.1 41 153-193 180-222 (319)
392 COG0042 tRNA-dihydrouridine sy 93.5 0.7 1.5E-05 43.3 10.2 42 152-193 184-228 (323)
393 PRK13523 NADPH dehydrogenase N 93.5 0.65 1.4E-05 43.8 10.1 78 74-192 225-304 (337)
394 PRK13111 trpA tryptophan synth 93.5 1.8 3.8E-05 39.3 12.5 41 153-194 188-229 (258)
395 cd02911 arch_FMN Archeal FMN-b 93.5 0.55 1.2E-05 41.9 9.0 40 152-193 180-220 (233)
396 PRK12738 kbaY tagatose-bisphos 93.4 3 6.6E-05 38.4 13.9 110 174-285 155-281 (286)
397 PTZ00411 transaldolase-like pr 93.4 1.1 2.3E-05 42.2 11.0 101 153-257 146-263 (333)
398 cd00950 DHDPS Dihydrodipicolin 93.3 6.2 0.00014 35.9 20.6 182 12-253 5-208 (284)
399 cd00945 Aldolase_Class_I Class 93.3 1.2 2.6E-05 37.7 10.6 65 178-255 18-91 (201)
400 cd00947 TBP_aldolase_IIB Tagat 93.2 6.6 0.00014 36.0 21.3 80 174-255 148-232 (276)
401 PRK05835 fructose-bisphosphate 93.2 3.3 7.1E-05 38.5 13.8 110 174-285 155-304 (307)
402 PRK08610 fructose-bisphosphate 93.1 3.1 6.8E-05 38.3 13.5 110 174-285 156-282 (286)
403 cd00564 TMP_TenI Thiamine mono 92.9 5 0.00011 33.7 14.2 44 151-194 136-179 (196)
404 TIGR02317 prpB methylisocitrat 92.9 5.3 0.00011 36.8 14.7 66 179-255 167-235 (285)
405 TIGR03569 NeuB_NnaB N-acetylne 92.9 8.4 0.00018 36.2 16.6 233 13-285 1-261 (329)
406 PF03102 NeuB: NeuB family; I 92.8 1.3 2.7E-05 39.9 10.3 76 154-240 58-133 (241)
407 cd02809 alpha_hydroxyacid_oxid 92.8 1.4 3.1E-05 40.6 11.1 86 159-249 109-200 (299)
408 PRK09195 gatY tagatose-bisphos 92.8 4.1 8.9E-05 37.5 13.9 110 174-285 155-281 (284)
409 PRK04180 pyridoxal biosynthesi 92.8 0.79 1.7E-05 42.0 9.0 44 151-194 189-235 (293)
410 PF04309 G3P_antiterm: Glycero 92.8 0.27 5.9E-06 41.8 5.7 77 65-194 93-170 (175)
411 TIGR00167 cbbA ketose-bisphosp 92.7 3.6 7.8E-05 37.9 13.4 110 174-285 158-285 (288)
412 PRK07455 keto-hydroxyglutarate 92.7 1.3 2.8E-05 38.1 10.0 80 154-248 51-131 (187)
413 TIGR03586 PseI pseudaminic aci 92.7 3.5 7.5E-05 38.8 13.5 147 72-248 13-166 (327)
414 COG0176 MipB Transaldolase [Ca 92.7 3.1 6.8E-05 37.2 12.5 101 155-259 106-210 (239)
415 TIGR01858 tag_bisphos_ald clas 92.5 8.5 0.00018 35.4 20.3 110 174-285 153-279 (282)
416 COG0352 ThiE Thiamine monophos 92.5 5.8 0.00013 34.9 13.8 43 151-193 144-186 (211)
417 PRK13398 3-deoxy-7-phosphohept 92.5 2.5 5.5E-05 38.5 12.0 97 154-253 124-235 (266)
418 TIGR00742 yjbN tRNA dihydrouri 92.4 2.2 4.7E-05 39.9 11.8 94 63-193 124-223 (318)
419 cd04733 OYE_like_2_FMN Old yel 92.4 1.8 4E-05 40.7 11.4 86 73-192 233-321 (338)
420 PF01116 F_bP_aldolase: Fructo 92.4 4.8 0.0001 37.1 13.8 110 175-285 156-284 (287)
421 PRK12346 transaldolase A; Prov 92.2 2 4.4E-05 40.1 11.2 100 153-257 135-252 (316)
422 PRK01222 N-(5'-phosphoribosyl) 92.2 7.5 0.00016 34.0 18.2 89 155-252 90-186 (210)
423 KOG0134 NADH:flavin oxidoreduc 92.2 1.8 3.9E-05 41.4 10.9 104 151-255 225-354 (400)
424 PRK13307 bifunctional formalde 92.1 6.6 0.00014 37.8 14.8 88 154-250 214-307 (391)
425 PLN02826 dihydroorotate dehydr 92.1 0.92 2E-05 43.9 9.1 106 63-194 263-371 (409)
426 cd02933 OYE_like_FMN Old yello 92.0 1.4 3.1E-05 41.5 10.2 41 152-192 272-313 (338)
427 PF01680 SOR_SNZ: SOR/SNZ fami 92.0 1.1 2.5E-05 38.0 8.3 117 80-246 25-142 (208)
428 cd00377 ICL_PEPM Members of th 91.9 1.8 3.8E-05 38.9 10.1 97 155-251 59-182 (243)
429 cd02922 FCB2_FMN Flavocytochro 91.9 2.2 4.7E-05 40.4 11.2 83 165-250 117-242 (344)
430 TIGR02317 prpB methylisocitrat 91.8 1.9 4E-05 39.8 10.3 84 165-250 12-109 (285)
431 TIGR00674 dapA dihydrodipicoli 91.8 10 0.00022 34.7 21.6 183 12-254 3-207 (285)
432 TIGR02313 HpaI-NOT-DapA 2,4-di 91.7 11 0.00023 34.8 22.8 182 12-253 5-210 (294)
433 PRK09427 bifunctional indole-3 91.7 0.46 1E-05 46.6 6.6 66 172-248 218-283 (454)
434 TIGR03249 KdgD 5-dehydro-4-deo 91.7 11 0.00023 34.7 20.6 184 12-253 10-213 (296)
435 PRK08883 ribulose-phosphate 3- 91.7 1.7 3.7E-05 38.4 9.7 42 153-194 150-196 (220)
436 TIGR02708 L_lactate_ox L-lacta 91.7 1.4 2.9E-05 42.1 9.5 93 153-250 122-257 (367)
437 TIGR03128 RuMP_HxlA 3-hexulose 91.6 3.4 7.5E-05 35.6 11.5 89 154-250 40-134 (206)
438 TIGR01768 GGGP-family geranylg 91.6 0.54 1.2E-05 41.6 6.3 43 152-194 165-209 (223)
439 cd03332 LMO_FMN L-Lactate 2-mo 91.5 1.4 3.1E-05 42.2 9.6 42 206-250 241-282 (383)
440 cd04722 TIM_phosphate_binding 91.3 6.1 0.00013 32.9 12.6 94 155-252 47-146 (200)
441 PRK11320 prpB 2-methylisocitra 91.3 12 0.00026 34.6 15.1 66 179-255 172-240 (292)
442 PRK12857 fructose-1,6-bisphosp 91.3 7.5 0.00016 35.8 13.7 110 174-285 155-281 (284)
443 PRK04161 tagatose 1,6-diphosph 91.3 3.4 7.3E-05 38.6 11.4 66 220-293 242-314 (329)
444 TIGR00874 talAB transaldolase. 91.3 3.1 6.8E-05 38.8 11.3 100 153-257 134-251 (317)
445 TIGR01361 DAHP_synth_Bsub phos 91.1 4.6 0.0001 36.6 12.2 97 154-253 122-233 (260)
446 PRK12309 transaldolase/EF-hand 91.1 2.5 5.5E-05 40.7 10.9 99 153-256 140-256 (391)
447 COG2876 AroA 3-deoxy-D-arabino 91.1 12 0.00025 34.1 14.8 186 14-248 48-248 (286)
448 PRK00278 trpC indole-3-glycero 91.1 1.5 3.3E-05 39.7 9.0 71 176-252 73-143 (260)
449 PRK12399 tagatose 1,6-diphosph 91.0 3.5 7.5E-05 38.4 11.2 65 220-292 240-311 (324)
450 cd06556 ICL_KPHMT Members of t 91.0 10 0.00022 34.0 14.1 39 177-227 160-198 (240)
451 cd07937 DRE_TIM_PC_TC_5S Pyruv 90.9 12 0.00027 34.0 14.9 148 74-274 19-190 (275)
452 PRK00043 thiE thiamine-phospha 90.9 8.6 0.00019 33.1 13.4 42 153-194 147-189 (212)
453 PRK06806 fructose-bisphosphate 90.8 1.8 3.9E-05 39.8 9.2 177 10-194 41-231 (281)
454 PRK11815 tRNA-dihydrouridine s 90.8 3.5 7.6E-05 38.8 11.5 43 150-193 189-233 (333)
455 cd02812 PcrB_like PcrB_like pr 90.8 0.61 1.3E-05 41.2 5.9 43 152-194 161-205 (219)
456 COG0159 TrpA Tryptophan syntha 90.7 2.3 5.1E-05 38.6 9.6 41 153-194 193-234 (265)
457 TIGR01036 pyrD_sub2 dihydrooro 90.7 0.8 1.7E-05 43.2 7.0 105 63-194 211-318 (335)
458 PRK11320 prpB 2-methylisocitra 90.6 3 6.4E-05 38.6 10.5 82 165-248 16-112 (292)
459 PF00218 IGPS: Indole-3-glycer 90.6 1.8 4E-05 39.1 8.9 71 177-253 72-142 (254)
460 PLN02495 oxidoreductase, actin 90.6 4.6 9.9E-05 38.8 12.1 158 11-194 113-300 (385)
461 PRK07695 transcriptional regul 90.6 10 0.00023 32.6 14.1 42 153-194 137-178 (201)
462 PRK07709 fructose-bisphosphate 90.5 1.7 3.6E-05 40.1 8.7 46 149-194 187-234 (285)
463 PRK13125 trpA tryptophan synth 90.4 3.5 7.6E-05 36.9 10.7 41 154-194 173-215 (244)
464 PRK08673 3-deoxy-7-phosphohept 90.4 5.3 0.00011 37.7 12.1 127 154-283 190-333 (335)
465 cd04734 OYE_like_3_FMN Old yel 90.4 4.5 9.7E-05 38.2 11.8 41 152-192 272-314 (343)
466 cd02811 IDI-2_FMN Isopentenyl- 90.4 4.2 9.1E-05 38.1 11.5 96 153-250 99-210 (326)
467 PF13714 PEP_mutase: Phosphoen 90.4 4.1 8.9E-05 36.5 10.9 83 165-250 8-106 (238)
468 cd02803 OYE_like_FMN_family Ol 90.4 2.3 4.9E-05 39.6 9.7 42 152-193 268-311 (327)
469 PF02581 TMP-TENI: Thiamine mo 90.4 5.1 0.00011 34.0 11.2 44 150-193 134-177 (180)
470 PRK10605 N-ethylmaleimide redu 90.4 2.5 5.4E-05 40.3 10.1 38 155-192 282-320 (362)
471 PRK05269 transaldolase B; Prov 90.4 4.1 8.9E-05 38.1 11.3 100 153-257 136-253 (318)
472 TIGR01521 FruBisAldo_II_B fruc 90.2 7.6 0.00016 36.7 12.9 112 174-286 171-325 (347)
473 TIGR01858 tag_bisphos_ald clas 90.2 1.5 3.3E-05 40.2 8.1 46 149-194 184-231 (282)
474 PF04476 DUF556: Protein of un 90.1 3 6.4E-05 37.1 9.5 94 155-251 40-153 (235)
475 PRK12737 gatY tagatose-bisphos 90.1 11 0.00024 34.7 13.7 110 174-285 155-281 (284)
476 cd04737 LOX_like_FMN L-Lactate 90.1 2.7 5.8E-05 39.9 9.9 90 153-248 114-248 (351)
477 TIGR00259 thylakoid_BtpA membr 89.8 15 0.00033 33.3 16.0 96 155-250 69-179 (257)
478 cd06556 ICL_KPHMT Members of t 89.8 2.9 6.3E-05 37.5 9.5 84 165-249 11-109 (240)
479 cd00951 KDGDH 5-dehydro-4-deox 89.8 16 0.00034 33.5 23.4 183 13-254 6-209 (289)
480 PLN02334 ribulose-phosphate 3- 89.8 14 0.00029 32.7 15.3 90 155-251 55-148 (229)
481 PRK13399 fructose-1,6-bisphosp 89.7 8.1 0.00018 36.6 12.7 112 174-286 173-327 (347)
482 cd02932 OYE_YqiM_FMN Old yello 89.7 2.2 4.8E-05 40.1 9.1 40 153-192 278-319 (336)
483 PRK08195 4-hyroxy-2-oxovalerat 89.6 19 0.0004 34.0 15.7 156 73-275 22-186 (337)
484 COG4981 Enoyl reductase domain 89.6 24 0.00052 35.3 18.1 37 219-255 212-259 (717)
485 COG5016 Pyruvate/oxaloacetate 89.5 2.2 4.7E-05 40.9 8.6 47 148-194 182-232 (472)
486 cd00952 CHBPH_aldolase Trans-o 89.5 4 8.7E-05 37.9 10.5 79 73-194 26-111 (309)
487 KOG2550 IMP dehydrogenase/GMP 89.4 1.6 3.4E-05 41.9 7.6 67 177-249 254-320 (503)
488 PRK12737 gatY tagatose-bisphos 89.4 2.2 4.7E-05 39.3 8.5 46 149-194 186-233 (284)
489 PRK12738 kbaY tagatose-bisphos 89.3 2.3 4.9E-05 39.2 8.5 46 149-194 186-233 (286)
490 COG2513 PrpB PEP phosphonomuta 89.3 3.8 8.2E-05 37.6 9.8 84 165-250 17-114 (289)
491 PRK05581 ribulose-phosphate 3- 89.3 14 0.0003 32.1 14.7 126 72-250 12-139 (220)
492 PRK04169 geranylgeranylglycery 89.2 0.95 2.1E-05 40.4 5.9 43 152-194 170-214 (232)
493 TIGR03151 enACPred_II putative 89.2 3.6 7.9E-05 38.2 10.0 82 153-248 50-135 (307)
494 PRK12457 2-dehydro-3-deoxyphos 89.2 5.6 0.00012 36.3 10.8 95 154-250 120-238 (281)
495 PRK05437 isopentenyl pyrophosp 89.2 5 0.00011 38.1 11.1 96 153-250 107-218 (352)
496 PF00701 DHDPS: Dihydrodipicol 89.2 17 0.00038 33.1 20.5 181 13-253 7-209 (289)
497 PF01884 PcrB: PcrB family; I 89.1 0.63 1.4E-05 41.4 4.6 41 154-194 171-212 (230)
498 PRK13396 3-deoxy-7-phosphohept 89.1 6.5 0.00014 37.3 11.6 138 17-195 142-308 (352)
499 PRK02506 dihydroorotate dehydr 88.9 3.6 7.7E-05 38.3 9.8 44 151-194 225-271 (310)
500 COG0269 SgbH 3-hexulose-6-phos 88.8 10 0.00022 33.4 11.7 91 154-252 44-140 (217)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=9.8e-65 Score=448.12 Aligned_cols=298 Identities=77% Similarity=1.190 Sum_probs=279.9
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCC-CceeEEEEecCChHHHH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVA 79 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~-~~~~~ql~~~~d~~~~~ 79 (310)
+||++||+++++||+|||+++..+.||+||.+.+++|.+.|+++++|+++++++|||.+..| +..|||||.+.|++.++
T Consensus 58 ~sTtvlG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~ 137 (363)
T KOG0538|consen 58 TSTTVLGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITE 137 (363)
T ss_pred ccceeccccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998875 58999999999999999
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHH
Q 021614 80 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKW 159 (310)
Q Consensus 80 ~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (310)
+++++++++||++|++|+|+|..|+|+.|+||+|..|+.++..++++......+....++...+++.+.|+.++|++|+|
T Consensus 138 ~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~w 217 (363)
T KOG0538|consen 138 QLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKW 217 (363)
T ss_pred HHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHH
Confidence 99999999999999999999999999999999999998776666665543334444456777899999999999999999
Q ss_pred HHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHH
Q 021614 160 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 239 (310)
Q Consensus 160 ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l 239 (310)
+|+.+++||++|++++.|+|+.+.++|+++|+||||||||+|..+.+++.|.++.+++.+++||+.+||||++.|++|||
T Consensus 218 Lr~~T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKAL 297 (363)
T KOG0538|consen 218 LRSITKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKAL 297 (363)
T ss_pred HHhcCcCCeEEEeecccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccceecc
Q 021614 240 ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTE 298 (310)
Q Consensus 240 ~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~ 298 (310)
++||.+|.+|||++|+++++|+.||+++++.+++|++..|++.|+.|++++.++.+...
T Consensus 298 ALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~~ 356 (363)
T KOG0538|consen 298 ALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEFELTMALSGCRSVKEITRNHVLTE 356 (363)
T ss_pred hcccceEEecCchheeeccccchhHHHHHHHHHHHHHHHHHHhCCCchhhhCccceeec
Confidence 99999999999999999999999999999999999999999999999999999875443
No 2
>PLN02979 glycolate oxidase
Probab=100.00 E-value=3.2e-60 Score=438.58 Aligned_cols=303 Identities=91% Similarity=1.342 Sum_probs=271.9
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChHHHHH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 80 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~~~~~ 80 (310)
|+|+|||+++++||++||+++.++.||++|.+++++|.++|+++++|+.++.++|||++..+++.|||+|.+.|++.+.+
T Consensus 59 tst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~~wfQLY~~~Dr~~~~~ 138 (366)
T PLN02979 59 MTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQ 138 (366)
T ss_pred CceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCCeEEEEeecCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999997766789999999999999999
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHH
Q 021614 81 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 160 (310)
Q Consensus 81 ~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 160 (310)
++++++++|+++|++|+|+|+.|+|++|+||+|..|.+++.+++..............+...++....++.++|++|+++
T Consensus 139 ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wl 218 (366)
T PLN02979 139 LVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWL 218 (366)
T ss_pred HHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999998876554443322111111111223344555567889999999999
Q ss_pred HhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Q 021614 161 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 240 (310)
Q Consensus 161 r~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~ 240 (310)
|+.|++||++|++.+.++|+.+.++|+|+|+|+||||++.++.++++..|.++++.+.+++||+++|||+++.|++|+|+
T Consensus 219 r~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALA 298 (366)
T PLN02979 219 QTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 298 (366)
T ss_pred HhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888999999999888766899999999999999999999
Q ss_pred cCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccceecccCCCC
Q 021614 241 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASL 303 (310)
Q Consensus 241 ~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~~ 303 (310)
+|||+|++||+++++++..|++++.++++.+++||+..|.++|+.++.++++..+...+..++
T Consensus 299 LGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~~~~ 361 (366)
T PLN02979 299 LGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPR 361 (366)
T ss_pred cCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999888775444
No 3
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=6.6e-60 Score=440.11 Aligned_cols=301 Identities=92% Similarity=1.353 Sum_probs=269.7
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChHHHHH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 80 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~~~~~ 80 (310)
|+|++||+++++||++||+++.++.||++|.+++++|.++|+++++|+.+++++|||.+..+++.|||||.+.|++.+.+
T Consensus 60 ~~t~~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~ 139 (367)
T PLN02493 60 MTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQ 139 (367)
T ss_pred CceEECCccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998766689999999999999999
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHH
Q 021614 81 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 160 (310)
Q Consensus 81 ~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 160 (310)
++++++++|+++|++|+|+|+.|+|++|+||+|..|.++..+++..............+...++....++.++|+.|+++
T Consensus 140 li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wl 219 (367)
T PLN02493 140 LVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWL 219 (367)
T ss_pred HHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999998876554443221110101011122334555567889999999999
Q ss_pred HhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Q 021614 161 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 240 (310)
Q Consensus 161 r~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~ 240 (310)
|+.|++||++|++.+.++++.+.++|+|+|+|+||||++.++.++++..|.++++.+.+++|||++|||+++.|++|+|+
T Consensus 220 r~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALA 299 (367)
T PLN02493 220 QTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 299 (367)
T ss_pred HhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888767899999999999999999999
Q ss_pred cCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccceecccCC
Q 021614 241 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 301 (310)
Q Consensus 241 ~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~ 301 (310)
+||++|++||++++++...|++++.++++.++.|++..|.++|++++.++++..+...+..
T Consensus 300 LGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~~~ 360 (367)
T PLN02493 300 LGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT 360 (367)
T ss_pred cCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhc
Confidence 9999999999999999999999999999999999999999999999999999988777633
No 4
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=1.6e-57 Score=426.87 Aligned_cols=296 Identities=50% Similarity=0.771 Sum_probs=260.9
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChHHHHH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 80 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~~~~~ 80 (310)
|+|+|||+++++||++|||+++++.||++|.+++++|+++|+++++|+.++.++|++.+..+++.|||+|.+.|++.+.+
T Consensus 48 ~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~ 127 (356)
T PF01070_consen 48 TSTTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRD 127 (356)
T ss_dssp SSEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHH
T ss_pred CCeeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998766889999999999999999
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccc-cc-----------ccc-ccchhhHHHhhhc
Q 021614 81 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL-GK-----------MDE-ANDSGLAAYVAGQ 147 (310)
Q Consensus 81 ~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~-~~-----------~~~-~~~~~~~~~~~~~ 147 (310)
++++++++|++++.||+|+|+.++|++|+|++|.+|.+++++++.+.-. +. ... ........+....
T Consensus 128 ~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (356)
T PF01070_consen 128 LIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQ 207 (356)
T ss_dssp HHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCH
T ss_pred HHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHh
Confidence 9999999999999999999999999999999999998776655443210 10 000 1123334566666
Q ss_pred cCCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEec
Q 021614 148 IDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 227 (310)
Q Consensus 148 ~~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (310)
.++.++|+.|+++++.+++||++|+++++++++.+.++|+|+|.|+|||||++|+++++++.|.++++++++++|||++|
T Consensus 208 ~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dg 287 (356)
T PF01070_consen 208 FDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADG 287 (356)
T ss_dssp B-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEES
T ss_pred cCCCCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999887789999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhccccee
Q 021614 228 GVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 296 (310)
Q Consensus 228 GI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~~~ 296 (310)
||+++.|++|++++||++|++||+|++++...|++++.++++.+++||+..|.++|+.++.||+++.+.
T Consensus 288 Gir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~~ 356 (356)
T PF01070_consen 288 GIRRGLDVAKALALGADAVGIGRPFLYALAAGGEEGVERVLEILKEELKRAMFLLGARSIAELRRSLLR 356 (356)
T ss_dssp S--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGEE
T ss_pred CCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhcC
Confidence 999999999999999999999999999998899999999999999999999999999999999998763
No 5
>PLN02535 glycolate oxidase
Probab=100.00 E-value=2.2e-57 Score=423.73 Aligned_cols=298 Identities=65% Similarity=1.021 Sum_probs=265.1
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChHHHHH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 80 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~~~~~ 80 (310)
|+|+|||+++++||++||+++.++.||++|.+++++|.+.|+++++|+.+++++|||++..+++.|||||.+.|++.+.+
T Consensus 62 ~~t~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ 141 (364)
T PLN02535 62 MSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQ 141 (364)
T ss_pred CceEECCccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998766689999999999999999
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHH
Q 021614 81 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 160 (310)
Q Consensus 81 ~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 160 (310)
++++++++|+++|++|+|+|+.++|++|+||+|..|. .+++..............+...++....++.++|+.|+++
T Consensus 142 ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~l 218 (364)
T PLN02535 142 LVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWL 218 (364)
T ss_pred HHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999998883 2222211000011111122334555557889999999999
Q ss_pred HhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Q 021614 161 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 240 (310)
Q Consensus 161 r~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~ 240 (310)
|+.++.||++|++.++++++.+.++|+|+|+++||||++.+++++++..|.++.+.+..++|||++|||+++.|++|+|+
T Consensus 219 r~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALa 298 (364)
T PLN02535 219 RSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALA 298 (364)
T ss_pred HhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999889999999999887766799999999999999999999
Q ss_pred cCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccceecccCC
Q 021614 241 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 301 (310)
Q Consensus 241 ~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~ 301 (310)
+||++|++||++++++...|++++++.++.+.+||+..|.++|+.++.|+++..++...+-
T Consensus 299 lGA~aV~vGr~~l~~l~~~g~~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~ 359 (364)
T PLN02535 299 LGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERER 359 (364)
T ss_pred cCCCEEEECHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhh
Confidence 9999999999999998889999999999999999999999999999999999887665543
No 6
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=4.1e-57 Score=421.05 Aligned_cols=288 Identities=42% Similarity=0.671 Sum_probs=257.3
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChHHHHH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 80 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~~~~~ 80 (310)
|+|+|||+++++||++||+++.++.||++|.+++++|+++|+++++|+++++++|||.+..+++.|||||.. |++.+++
T Consensus 54 ~~ttllG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ 132 (361)
T cd04736 54 ISASLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAEL 132 (361)
T ss_pred CceeECCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987667899999975 6999999
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCccccccccccc-c------------ccc---cccc---chhhH
Q 021614 81 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD-L------------GKM---DEAN---DSGLA 141 (310)
Q Consensus 81 ~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~-~------------~~~---~~~~---~~~~~ 141 (310)
+++|++++|+++|++|+|+|+.|+|++|+|++|..|.+++++++.+.- - +.+ .... ..+..
T Consensus 133 ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (361)
T cd04736 133 LVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQA 212 (361)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHH
Confidence 999999999999999999999999999999999988766655432210 0 011 0000 01122
Q ss_pred HHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCc
Q 021614 142 AYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 221 (310)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i 221 (310)
.++..+.|+.++|+.|+++|+.++.|+++|++.+.++++.+.++|+|+|+++||||++++..+++++.+.++++.+ ++
T Consensus 213 ~~~~~~~d~~~~w~~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~ 290 (361)
T cd04736 213 ALMSRQMDASFNWQDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YK 290 (361)
T ss_pred HHHHhccCCcCCHHHHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CC
Confidence 3444457899999999999999999999999999999999999999999999999999998888999999998876 59
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhc
Q 021614 222 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEIT 291 (310)
Q Consensus 222 pvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~ 291 (310)
|||++|||+++.|++|+|++||++|++|||++++++..|+++|+++++.+++||+..|.++|++++.||+
T Consensus 291 ~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~ 360 (361)
T cd04736 291 PVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcC
Confidence 9999999999999999999999999999999999988999999999999999999999999999999985
No 7
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=5.3e-57 Score=423.00 Aligned_cols=295 Identities=39% Similarity=0.664 Sum_probs=261.2
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChHHHHH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 80 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~~~~~ 80 (310)
|+|+|||+++++||++||+++.++.||++|.+++++|.+.|+++++|+.+++++|||.+..+++.|||||.+.|++.+.+
T Consensus 60 ~~t~llG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~ 139 (381)
T PRK11197 60 LETTLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRN 139 (381)
T ss_pred CceEECCcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999998766689999999999999999
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCccccccccc-cc----------------cccccccc-----ch
Q 021614 81 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG-LD----------------LGKMDEAN-----DS 138 (310)
Q Consensus 81 ~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~-~~----------------~~~~~~~~-----~~ 138 (310)
+++|++++|+++|++|+|+|+.|+|++|+|++|..|.. +.+++.+ +. .+++.+.. ..
T Consensus 140 li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~ 218 (381)
T PRK11197 140 ALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLE 218 (381)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchh
Confidence 99999999999999999999999999999999988842 3222111 00 01111100 01
Q ss_pred hhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhc
Q 021614 139 GLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 218 (310)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~ 218 (310)
....++....++.++|+.|+++|+.++.||++|++.+.++++.+.++|+|+|+|+||||++.+..+++...|.++.+.+.
T Consensus 219 ~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~ 298 (381)
T PRK11197 219 DYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVK 298 (381)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhc
Confidence 11123445578899999999999999999999999999999999999999999999999999888888999999888776
Q ss_pred CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhccccee
Q 021614 219 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 296 (310)
Q Consensus 219 ~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~~~ 296 (310)
.++|||++|||+++.|+.|+|++||++|++||+|++++...|+++|.++++.+++||+..|.++|++++.||++..+.
T Consensus 299 ~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~ 376 (381)
T PRK11197 299 GDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLV 376 (381)
T ss_pred CCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhc
Confidence 689999999999999999999999999999999999998999999999999999999999999999999999988764
No 8
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=9.4e-57 Score=419.44 Aligned_cols=295 Identities=37% Similarity=0.573 Sum_probs=261.3
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccC-CCceeEEEEecCChHHHH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVA 79 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~-~~~~~~ql~~~~d~~~~~ 79 (310)
|+|+|||+++++||++||+++.++.||++|.+++++|.++|+++++|+.+++++|||.+.. +.+.|||||...|++.+.
T Consensus 70 ~~t~llG~~~~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~ 149 (367)
T TIGR02708 70 TEIEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINR 149 (367)
T ss_pred CceeeCCcccccccccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999773 458999999999999999
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHH
Q 021614 80 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKW 159 (310)
Q Consensus 80 ~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (310)
++++|++++|+++|++|+|+|+.|+|++|+|++|.+|....... .. +....... ...+....++.++|+.|++
T Consensus 150 ~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~-~~-----~~~~~~~~-~~~~~~~~~~~~~w~~i~~ 222 (367)
T TIGR02708 150 DIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQ-EY-----LPTGAGKS-MDNVYKSAKQKLSPRDIEE 222 (367)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhh-hh-----cccCCccc-hhhhccccCCCCCHHHHHH
Confidence 99999999999999999999999999999999998885321110 00 00000000 0111222457789999999
Q ss_pred HHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHH
Q 021614 160 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 239 (310)
Q Consensus 160 ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l 239 (310)
+++.+++||++|++.++++++.+.++|+|+|.|+||||+|.+.++++++.|.++++++.+++|||++|||+++.|++|+|
T Consensus 223 l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaL 302 (367)
T TIGR02708 223 IAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKAL 302 (367)
T ss_pred HHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988876689999999999999999999
Q ss_pred HcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccceecccCCC
Q 021614 240 ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 302 (310)
Q Consensus 240 ~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~~ 302 (310)
++|||+|++|||+++++...|++++.++++.+++||+..|.++|+.++.+|++..+...-+++
T Consensus 303 alGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~~~~~ 365 (367)
T TIGR02708 303 ASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRHNPYGY 365 (367)
T ss_pred HcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCccccccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999886665544
No 9
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=1.1e-55 Score=414.88 Aligned_cols=293 Identities=42% Similarity=0.695 Sum_probs=256.4
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCC-CceeEEEEecCChHHHH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVA 79 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~-~~~~~ql~~~~d~~~~~ 79 (310)
|+|+|||+++++||++||+++.++.||++|.+++++|.++|+++++|+.+++++|||.+..+ ++.|||||...|++.+.
T Consensus 75 t~t~llG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~ 154 (383)
T cd03332 75 LSVELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTE 154 (383)
T ss_pred CceeeCCccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999997743 58999999999999999
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCc--ccccccc-c------ccccccccc-----cchhhHHHhh
Q 021614 80 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF--LTLKNFQ-G------LDLGKMDEA-----NDSGLAAYVA 145 (310)
Q Consensus 80 ~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~--~~~~~~~-~------~~~~~~~~~-----~~~~~~~~~~ 145 (310)
+++++++++|+++|++|+|+|+.|+|++|+|++|. |.. .+...+. . +........ ..........
T Consensus 155 ~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (383)
T cd03332 155 SLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYL-PFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVS 233 (383)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCC-CCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHH
Confidence 99999999999999999999999999999999983 531 1111100 0 000000000 0012223333
Q ss_pred hccCCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 021614 146 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 225 (310)
Q Consensus 146 ~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia 225 (310)
...++.++|+.|+++++.++.||++|++.+.++++.+.++|+|+|+|+||||++.+++++++..|.++++.+.+++||++
T Consensus 234 ~~~~~~~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~ 313 (383)
T cd03332 234 VFSGPSLTWEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLF 313 (383)
T ss_pred hcCCCCCCHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEE
Confidence 34578899999999999999999999999999999999999999999999999999999999999999988866899999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021614 226 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 294 (310)
Q Consensus 226 ~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (310)
+|||+++.|++|+|++|||+|++||+|+++++..|+++|+++++.+++||+..|.++|++++.||+++.
T Consensus 314 dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~ 382 (383)
T cd03332 314 DSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDA 382 (383)
T ss_pred eCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCccc
Confidence 999999999999999999999999999999988999999999999999999999999999999998764
No 10
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=2.6e-55 Score=409.29 Aligned_cols=289 Identities=42% Similarity=0.698 Sum_probs=257.2
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccC-CCceeEEEEecCChHHHH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVA 79 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~-~~~~~~ql~~~~d~~~~~ 79 (310)
|+|++||+++++||++|||++.++.||++|.+++++|.++|+++++|+.+++++||+.+.. +++.|||+|.+.|++.+.
T Consensus 62 ~~t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~ 141 (351)
T cd04737 62 TSTELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNR 141 (351)
T ss_pred CceEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999876 458999999999999999
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHH
Q 021614 80 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKW 159 (310)
Q Consensus 80 ~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (310)
+++++++++|+++|++|+|+|+.++|++|+|++|..|............ .....+. .......++.++|+.+++
T Consensus 142 ~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~l~~ 215 (351)
T cd04737 142 SLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEG-----TGKGKGI-SEIYAAAKQKLSPADIEF 215 (351)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccc-----cccCcch-hhhhhhccCCCCHHHHHH
Confidence 9999999999999999999999999999999999888544322111100 0000010 111223467789999999
Q ss_pred HHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHH
Q 021614 160 LQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 239 (310)
Q Consensus 160 ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l 239 (310)
+|+.+++||++|++.++++++.+.++|+|+|+++||||+++++++++++.+.++++++..++|||++|||+++.|++|+|
T Consensus 216 lr~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaL 295 (351)
T cd04737 216 IAKISGLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKAL 295 (351)
T ss_pred HHHHhCCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999988889999999988876689999999999999999999
Q ss_pred HcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccce
Q 021614 240 ALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 295 (310)
Q Consensus 240 ~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~~ 295 (310)
++||++|++||+++++++..|++++.++++.+.+||+..|.++|+.+++|+++..+
T Consensus 296 alGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 296 ASGADAVAVGRPVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HcCCCEEEECHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999987653
No 11
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=3.3e-53 Score=395.29 Aligned_cols=285 Identities=46% Similarity=0.730 Sum_probs=253.4
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHcc-CC-CceeEEEEecCChHHH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP-GIRFFQLYVYKDRNVV 78 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~-~~-~~~~~ql~~~~d~~~~ 78 (310)
|+|+|||++++.||+||||++.++.||++|.+++++|.+.|+++++|++++.++|||.+. .+ .+.|||||.+.|++.+
T Consensus 54 ~~~~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~ 133 (344)
T cd02922 54 TSTTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKT 133 (344)
T ss_pred CceEECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHH
Confidence 689999999999999999999988999999999999999999999999999999998865 33 4889999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHH
Q 021614 79 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 158 (310)
Q Consensus 79 ~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (310)
.+++++++++|+++|++|+|+|..++|++|+|++|..|.+++....... ....+....+....++..+|+.++
T Consensus 134 ~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~ 206 (344)
T cd02922 134 EELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTK-------AKGGGAGRAMSGFIDPTLTWDDIK 206 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccc-------cccchHHHHHhhccCCCCCHHHHH
Confidence 9999999999999999999999999999999999998865533221100 001122334444457788999999
Q ss_pred HHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHH---hcCCceEEEecCCCCHHHH
Q 021614 159 WLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVRRGTDV 235 (310)
Q Consensus 159 ~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~---~~~~ipvia~GGI~~~~dv 235 (310)
++++.+++||++|++.+.++++.+.++|+|+|+++||||++.+..++++..|.++++. +.+++|||++|||+++.|+
T Consensus 207 ~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv 286 (344)
T cd02922 207 WLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDV 286 (344)
T ss_pred HHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHH
Confidence 9999999999999999999999999999999999999999988878888888888764 3357999999999999999
Q ss_pred HHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcc
Q 021614 236 FKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 292 (310)
Q Consensus 236 ~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~ 292 (310)
+|+|++||++|++||+|++++.+.|+++|.++++.+.+||+..|..+|++++.+|++
T Consensus 287 ~kalaLGA~aV~iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~ 343 (344)
T cd02922 287 LKALCLGAKAVGLGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQLGP 343 (344)
T ss_pred HHHHHcCCCEEEECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCc
Confidence 999999999999999999999989999999999999999999999999999999975
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.6e-47 Score=357.03 Aligned_cols=297 Identities=44% Similarity=0.608 Sum_probs=264.7
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChHHHHH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 80 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~~~~~ 80 (310)
|+|+|||+++++||+||||+++++.|++++..-+++|+.+|.+++.++++++++|++.+..+ ||+|...+++...+
T Consensus 54 lst~~~G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~ 129 (360)
T COG1304 54 LSTTFLGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPN 129 (360)
T ss_pred cceEecCccccCCEEEeccccccccChhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHH
Confidence 68999999999999999999999999999999999999999999999999999998876643 89997789999999
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccc-c--ccc-cccchhhHHHhhhccCCcccHHH
Q 021614 81 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDL-G--KMD-EANDSGLAAYVAGQIDRSLSWKD 156 (310)
Q Consensus 81 ~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~ 156 (310)
+++++.++|++.+++|+|.|..++|++|+++.+..|......++.+... | ... ........++.....+|..+|+.
T Consensus 130 ~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked 209 (360)
T COG1304 130 LVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKED 209 (360)
T ss_pred HHHHHHhcCCcceeeccCccchHHHHHHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHH
Confidence 9999999999999999999999999999999999886554444433210 0 000 00001223455566789999999
Q ss_pred HHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHH
Q 021614 157 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 236 (310)
Q Consensus 157 i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 236 (310)
+.++++.|..|+++|++.+++|+..+.+.|+|+|.++||||+++|+++++++.|.++++++.++++|++|||||++.|++
T Consensus 210 ~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~ 289 (360)
T COG1304 210 GAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVA 289 (360)
T ss_pred HhHHHHhcCCcHHHhCCCCHHHHHhhccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987789999999999999999
Q ss_pred HHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccceecccCC
Q 021614 237 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 301 (310)
Q Consensus 237 k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~ 301 (310)
|||++||++|++|||+++++...|+++|.+.++.+++||+..|.++|+++|+||++..++.....
T Consensus 290 KAlALGA~~v~igrp~L~~l~~~g~~GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~~~ 354 (360)
T COG1304 290 KALALGADAVGIGRPFLYGLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSGRL 354 (360)
T ss_pred HHHHhCCchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999988766544
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=6.4e-44 Score=329.39 Aligned_cols=246 Identities=62% Similarity=0.954 Sum_probs=227.4
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChHHHHH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 80 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~~~~~ 80 (310)
|+|+|||++++.||++|||++.++.+++++..++++|.++|+++++|+++..+++++.+..+.+.|+|+|...+++.+.+
T Consensus 54 ~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~ 133 (299)
T cd02809 54 TSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITED 133 (299)
T ss_pred CceEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHH
Confidence 68999999999999999999887778999999999999999999999998889999987766788999997678999999
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHH
Q 021614 81 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 160 (310)
Q Consensus 81 ~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 160 (310)
+++++++.|+++|++|+|||..+.| ..|+.++++
T Consensus 134 ~i~~~~~~g~~~i~l~~~~p~~~~~----------------------------------------------~~~~~i~~l 167 (299)
T cd02809 134 LLRRAEAAGYKALVLTVDTPVLGRR----------------------------------------------LTWDDLAWL 167 (299)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCC----------------------------------------------CCHHHHHHH
Confidence 9999999999999999999875211 346889999
Q ss_pred HhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Q 021614 161 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 240 (310)
Q Consensus 161 r~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~ 240 (310)
++.+++||++|++.++++++.+.++|+|+|++++|||++.+++++++..+.++++.+..++|||++|||+++.|+.|+++
T Consensus 168 ~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~ 247 (299)
T cd02809 168 RSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA 247 (299)
T ss_pred HHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999988899999999999887755799999999999999999999
Q ss_pred cCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcc
Q 021614 241 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 292 (310)
Q Consensus 241 ~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~ 292 (310)
+|||+|++||+|++++.+.|.+++.++++.+++||+.+|..+|+++++||++
T Consensus 248 lGAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G~~~i~~l~~ 299 (299)
T cd02809 248 LGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLADLDP 299 (299)
T ss_pred cCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 9999999999999998888999999999999999999999999999999863
No 14
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=100.00 E-value=2.6e-35 Score=276.84 Aligned_cols=255 Identities=25% Similarity=0.350 Sum_probs=202.8
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCC--CC------HHHHHccCC-CceeEEEEe
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SS------VEEVASTGP-GIRFFQLYV 71 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~--~~------~e~i~~~~~-~~~~~ql~~ 71 (310)
|+|+|||+++++||+++||+|+.....+.+..|+++|.++|+++++++++. .. ++.+++..| .+.+.+|+.
T Consensus 50 ~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~~~~~~~~vr~~~p~~p~~aNl~~ 129 (352)
T PRK05437 50 LSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPELADSFSVVRKVAPDGLLFANLGA 129 (352)
T ss_pred ceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChhhHHHHHHHHHHCCCceEEeecCc
Confidence 689999999999999999998742223456889999999999999999863 11 222344444 356667765
Q ss_pred cCC----hHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhc
Q 021614 72 YKD----RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 147 (310)
Q Consensus 72 ~~d----~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (310)
... ++...+. ++..+++++.+++++++. .+++.
T Consensus 130 ~~~~~~~~~~~~~~---~~~~~adal~l~l~~~qe----------------------------------------~~~p~ 166 (352)
T PRK05437 130 VQLYGYGVEEAQRA---VEMIEADALQIHLNPLQE----------------------------------------LVQPE 166 (352)
T ss_pred cccCCCCHHHHHHH---HHhcCCCcEEEeCccchh----------------------------------------hcCCC
Confidence 433 4444444 455688999999987653 11122
Q ss_pred cCCcc--cHHHHHHHHhhCCCCEEEEec---CCHHHHHHHHHcCCcEEEEecCCCCC------------------CCCCc
Q 021614 148 IDRSL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ------------------LDYVP 204 (310)
Q Consensus 148 ~~~~~--~~~~i~~ir~~~~~pv~vK~~---~~~~~a~~~~~aGad~I~v~~~gg~~------------------~~~~~ 204 (310)
.+.++ ..+.++++++.+++||++|++ .+.++++.+.++|+|+|+++|+||+. .+++.
T Consensus 167 g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~ 246 (352)
T PRK05437 167 GDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGI 246 (352)
T ss_pred CcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccC
Confidence 23333 247899999999999999988 78999999999999999999988732 12456
Q ss_pred chHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCC
Q 021614 205 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 284 (310)
Q Consensus 205 ~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~ 284 (310)
++...+.++++.. .++|||++|||+++.|+.|++++|||+|++||+|++++...|.+++.++++.+.+||+.+|..+|+
T Consensus 247 pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~ 325 (352)
T PRK05437 247 PTAQSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGA 325 (352)
T ss_pred CHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7788888887763 379999999999999999999999999999999999887789999999999999999999999999
Q ss_pred CCHhhhcccceeccc
Q 021614 285 RSLKEITRDHIVTEW 299 (310)
Q Consensus 285 ~~i~~l~~~~~~~~~ 299 (310)
++++||++.+++...
T Consensus 326 ~~i~eL~~~~~~~~~ 340 (352)
T PRK05437 326 KNIAELRKVPLVLSG 340 (352)
T ss_pred CCHHHhCCCCEEecH
Confidence 999999999876544
No 15
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=100.00 E-value=6.9e-35 Score=271.79 Aligned_cols=247 Identities=28% Similarity=0.361 Sum_probs=193.1
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCC--C------CHHHHHccCC-CceeEEEEe
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--S------SVEEVASTGP-GIRFFQLYV 71 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~--~------~~e~i~~~~~-~~~~~ql~~ 71 (310)
|+|+|||+++++|||++||+|+.....+.+..++++|.++|+++++++++. . .++.+++..+ .+.+.+++.
T Consensus 42 ~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e~~~~~~~vr~~~~~~p~~~Nl~~ 121 (326)
T cd02811 42 LSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPELAESFTVVREAPPNGPLIANLGA 121 (326)
T ss_pred CeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccChhhhhHHHHHHHhCCCceEEeecCc
Confidence 689999999999999999998742223346889999999999999999853 1 1223344444 355556664
Q ss_pred cC----ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhc
Q 021614 72 YK----DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 147 (310)
Q Consensus 72 ~~----d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (310)
.. +.+...+.++ ..+++++.+++++++. ..++.
T Consensus 122 ~~~~~~~~~~~~~~i~---~~~adalel~l~~~q~----------------------------------------~~~~~ 158 (326)
T cd02811 122 VQLNGYGVEEARRAVE---MIEADALAIHLNPLQE----------------------------------------AVQPE 158 (326)
T ss_pred cccCCCCHHHHHHHHH---hcCCCcEEEeCcchHh----------------------------------------hcCCC
Confidence 43 5555555544 4678999999886552 11111
Q ss_pred cCCcc--cHHHHHHHHhhCCCCEEEEec---CCHHHHHHHHHcCCcEEEEecCCCCCC--------------------CC
Q 021614 148 IDRSL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQL--------------------DY 202 (310)
Q Consensus 148 ~~~~~--~~~~i~~ir~~~~~pv~vK~~---~~~~~a~~~~~aGad~I~v~~~gg~~~--------------------~~ 202 (310)
.+.++ ..+.|+++++.+++||++|.+ .+.++++.+.++|+|+|+++++||+.. ++
T Consensus 159 ~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~ 238 (326)
T cd02811 159 GDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADW 238 (326)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccc
Confidence 22222 237799999999999999987 789999999999999999999887421 12
Q ss_pred CcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHc
Q 021614 203 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALS 282 (310)
Q Consensus 203 ~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~ 282 (310)
+.++...+.++++.+. ++|||++|||+++.|+.|++++|||+|++||+|++++.. |.+++.++++.+..||+.+|..+
T Consensus 239 g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~m~~~ 316 (326)
T cd02811 239 GIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTAMFLT 316 (326)
T ss_pred cccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777766543 799999999999999999999999999999999998766 99999999999999999999999
Q ss_pred CCCCHhhhcc
Q 021614 283 GCRSLKEITR 292 (310)
Q Consensus 283 G~~~i~~l~~ 292 (310)
|+++++||++
T Consensus 317 G~~si~el~~ 326 (326)
T cd02811 317 GAKNLAELKQ 326 (326)
T ss_pred CCCCHHHhcC
Confidence 9999999974
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=100.00 E-value=1.5e-34 Score=270.23 Aligned_cols=256 Identities=25% Similarity=0.341 Sum_probs=195.5
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCC--------CHHHHHccCCC-ceeEEEEe
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--------SVEEVASTGPG-IRFFQLYV 71 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~--------~~e~i~~~~~~-~~~~ql~~ 71 (310)
|||+|||+++++|||++||+|+.....+-+..|+++|+++|+++++++++.. ..+.+++..+. +.+.++..
T Consensus 43 ~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~~~~~~vr~~~~~~p~i~nl~~ 122 (333)
T TIGR02151 43 LTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPETADTFEVVREEAPNGPLIANIGA 122 (333)
T ss_pred CceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhHhHHHHHHHhCCCCcEEeecCc
Confidence 6899999999999999999987321123467899999999999999997621 12223333333 55556654
Q ss_pred cCChHH-HHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCC
Q 021614 72 YKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 150 (310)
Q Consensus 72 ~~d~~~-~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (310)
....+. .++..+.++..+++++.+|+++++. .+++..++
T Consensus 123 ~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~----------------------------------------~~~p~g~~ 162 (333)
T TIGR02151 123 PQLVEGGPEEAQEAIDMIEADALAIHLNVLQE----------------------------------------LVQPEGDR 162 (333)
T ss_pred hhhccccHHHHHHHHHHhcCCCEEEcCccccc----------------------------------------ccCCCCCc
Confidence 322111 3333344455678999999987653 11222233
Q ss_pred cc--cHHHHHHHHhhCCCCEEEEec---CCHHHHHHHHHcCCcEEEEecCCCCCC------------------CCCcchH
Q 021614 151 SL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQL------------------DYVPATI 207 (310)
Q Consensus 151 ~~--~~~~i~~ir~~~~~pv~vK~~---~~~~~a~~~~~aGad~I~v~~~gg~~~------------------~~~~~~~ 207 (310)
++ ..+.++++++.+++||++|.+ .+.+.++.+.++|+|+|+++++||+++ +++.++.
T Consensus 163 ~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~ 242 (333)
T TIGR02151 163 NFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTA 242 (333)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHH
Confidence 33 237899999999999999987 789999999999999999999887531 1244455
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCH
Q 021614 208 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 287 (310)
Q Consensus 208 ~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i 287 (310)
..+.++++ ...++|||++|||+++.|+.|++++|||+|++||+|+......|.+.+.++++.+..||+.+|..+|++++
T Consensus 243 ~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i 321 (333)
T TIGR02151 243 ASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTI 321 (333)
T ss_pred HHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 66666654 22379999999999999999999999999999999999876689999999999999999999999999999
Q ss_pred hhhcccceec
Q 021614 288 KEITRDHIVT 297 (310)
Q Consensus 288 ~~l~~~~~~~ 297 (310)
+||++.+++.
T Consensus 322 ~el~~~~~~~ 331 (333)
T TIGR02151 322 AELKKVPLVI 331 (333)
T ss_pred HHHccCCeEe
Confidence 9999987654
No 17
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.94 E-value=1.1e-24 Score=201.17 Aligned_cols=240 Identities=18% Similarity=0.226 Sum_probs=177.7
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHH----ccCCCceeEEEEecCChH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA----STGPGIRFFQLYVYKDRN 76 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~----~~~~~~~~~ql~~~~d~~ 76 (310)
++|+|+|+++++|||+++|.. ..|..||++|+++|.-..+.-+ .+|+.. +..+...+..+-.+.+++
T Consensus 27 lst~~~~~~l~~P~~inAM~t------~iN~~LA~~a~~~G~~~~~~k~---~~e~~~~~~r~~~~~~l~v~~~vg~~~~ 97 (326)
T PRK05458 27 TSVTLGPRTFKLPVVPANMQT------IIDEKIAEWLAENGYFYIMHRF---DPEARIPFIKDMHEQGLIASISVGVKDD 97 (326)
T ss_pred cceEECCcEecCcEEEecccc------hhHHHHHHHHHHcCCEEEEecC---CHHHHHHHHHhccccccEEEEEecCCHH
Confidence 689999999999999999942 4588999999999877666542 444432 232333455666555565
Q ss_pred HHHHHHHHHHHcCC--cEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccH
Q 021614 77 VVAQLVRRAERAGF--KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 154 (310)
Q Consensus 77 ~~~~~i~~~~~~G~--~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (310)
..+++ +.+.++|+ +.|.| |+.. ++... ..
T Consensus 98 ~~~~~-~~Lv~ag~~~d~i~i--D~a~-------------------------------------gh~~~---------~~ 128 (326)
T PRK05458 98 EYDFV-DQLAAEGLTPEYITI--DIAH-------------------------------------GHSDS---------VI 128 (326)
T ss_pred HHHHH-HHHHhcCCCCCEEEE--ECCC-------------------------------------CchHH---------HH
Confidence 55544 44566654 87766 3311 11111 23
Q ss_pred HHHHHHHhhCC-CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCC------CCCcch--HHHHHHHHHHhcCCceEEE
Q 021614 155 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPAT--IMALEEVVKATQGRIPVFL 225 (310)
Q Consensus 155 ~~i~~ir~~~~-~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~------~~~~~~--~~~l~~i~~~~~~~ipvia 225 (310)
+.|+++|+.++ .||++|.+.|.++++.+.++|+|+|.+++++|+.. ..+.+. +..+.++++.+ ++|||+
T Consensus 129 e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~--~ipVIA 206 (326)
T PRK05458 129 NMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIA 206 (326)
T ss_pred HHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc--CCCEEE
Confidence 67999999985 88998889999999999999999999999888541 113353 34577777665 699999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEcHHHHHH------------------h-----hh-------ccHH-------HHHHHH
Q 021614 226 DGGVRRGTDVFKALALGASGIFIGRPVVYS------------------L-----AA-------EGEK-------GVRRVL 268 (310)
Q Consensus 226 ~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~------------------~-----~~-------~G~~-------~v~~~l 268 (310)
+|||+++.|+.|+|++|||+||+|++|.-. . .. +|.+ .+.+++
T Consensus 207 dGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~l 286 (326)
T PRK05458 207 DGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDTL 286 (326)
T ss_pred eCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhccccccccCCceEEecccCCHHHHH
Confidence 999999999999999999999999999710 1 11 2333 588999
Q ss_pred HHHHHHHHHHHHHcCCCCHhhhcccceecccC
Q 021614 269 EMLREEFELAMALSGCRSLKEITRDHIVTEWD 300 (310)
Q Consensus 269 ~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~~~ 300 (310)
.++..+|+..|.++|+.++.||++...+....
T Consensus 287 ~~l~~gLr~~m~~~Ga~~i~el~~~~~v~~~~ 318 (326)
T PRK05458 287 TEMEQDLQSSISYAGGRDLDAIRKVDYVIVKN 318 (326)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhcCCEEEEec
Confidence 99999999999999999999999865544433
No 18
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.94 E-value=2.3e-25 Score=207.43 Aligned_cols=251 Identities=17% Similarity=0.159 Sum_probs=189.3
Q ss_pred eecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCC-H-----HH--HHc--cCCCceeEEEEecC
Q 021614 4 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS-V-----EE--VAS--TGPGIRFFQLYVYK 73 (310)
Q Consensus 4 ~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~-~-----e~--i~~--~~~~~~~~ql~~~~ 73 (310)
.|.+.+++.|+++|||++. + |.+|++.|+++|..++++++-+.. + .. ... ..+.+..+|++ ++
T Consensus 2 ~i~~~~~~~~~~lAPM~g~--t----d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-g~ 74 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGI--T----DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-GS 74 (321)
T ss_pred ccCCccCCCCEEecCCCCC--C----cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-CC
Confidence 3566788999999999886 3 889999999999999998874322 1 00 111 11235678998 89
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCccc
Q 021614 74 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 153 (310)
Q Consensus 74 d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (310)
|++.+.+.++.+++.|++.|++|++||+. ++.. .+.+..+. .+|++.
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~---------------~v~~----------------~g~Gs~ll--~~p~~~ 121 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAK---------------KVNR----------------KLAGSALL--QYPDLV 121 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHH---------------HHcC----------------CCcccHHh--cCHHHH
Confidence 99999999998888999999999999985 1110 11222333 378888
Q ss_pred HHHHHHHHhhCCCCEEEEecC--------CHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 021614 154 WKDVKWLQTITKLPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 225 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~~--------~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia 225 (310)
.++++.+++.+++||.+|+.. ..+.++.+.++|+|+|.++++...+...+...++.+.++++.+ ++|||+
T Consensus 122 ~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~ 199 (321)
T PRK10415 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIA 199 (321)
T ss_pred HHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEE
Confidence 999999999999999999962 1345788999999999998765434445667788888888876 799999
Q ss_pred ecCCCCHHHHHHHHH-cCCCEEEEcHHHHH-----Hhh----hcc----HHHHHHHHHHHHHHHHHHHHHcCCC-CHhhh
Q 021614 226 DGGVRRGTDVFKALA-LGASGIFIGRPVVY-----SLA----AEG----EKGVRRVLEMLREEFELAMALSGCR-SLKEI 290 (310)
Q Consensus 226 ~GGI~~~~dv~k~l~-~GAd~V~ig~~~l~-----~~~----~~G----~~~v~~~l~~l~~~l~~~m~~~G~~-~i~~l 290 (310)
+|||+|++|+.+++. .|||+||+||+++. ... ..| .....+.+..+.++++....++|.. .+.++
T Consensus 200 nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (321)
T PRK10415 200 NGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA 279 (321)
T ss_pred eCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHH
Confidence 999999999999997 69999999996653 211 112 1234567788888898888888865 57788
Q ss_pred ccccee
Q 021614 291 TRDHIV 296 (310)
Q Consensus 291 ~~~~~~ 296 (310)
|++..+
T Consensus 280 rk~~~~ 285 (321)
T PRK10415 280 RKHVSW 285 (321)
T ss_pred HHHHHH
Confidence 887544
No 19
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.94 E-value=1.3e-24 Score=199.84 Aligned_cols=241 Identities=20% Similarity=0.218 Sum_probs=175.2
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHH----HHccCCCceeEEEEecCChH
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE----VASTGPGIRFFQLYVYKDRN 76 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~----i~~~~~~~~~~ql~~~~d~~ 76 (310)
|+|+|+|++++.|||+++|.. ..|..||++|+++|.-..+..+ ++|+ +.+..+...++.+-.+..++
T Consensus 24 lst~~~~~~l~~P~~inAM~t------~in~~LA~~a~~~G~~~i~hK~---~~E~~~sfvrk~k~~~L~v~~SvG~t~e 94 (321)
T TIGR01306 24 TSVTLGKHKFKLPVVPANMQT------IIDEKLAEQLAENGYFYIMHRF---DEESRIPFIKDMQERGLFASISVGVKAC 94 (321)
T ss_pred eeEEECCcEecCcEEeeccch------hhhHHHHHHHHHcCCEEEEecC---CHHHHHHHHHhccccccEEEEEcCCCHH
Confidence 689999999999999999942 4588999999999988887663 3443 22332223344555555555
Q ss_pred HHHHHHHHHHHcC--CcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccH
Q 021614 77 VVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 154 (310)
Q Consensus 77 ~~~~~i~~~~~~G--~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (310)
..+++ +.+.++| .+.|.+ |+. .++ ....+
T Consensus 95 ~~~r~-~~lv~a~~~~d~i~~--D~a-------------------------------------hg~---------s~~~~ 125 (321)
T TIGR01306 95 EYEFV-TQLAEEALTPEYITI--DIA-------------------------------------HGH---------SNSVI 125 (321)
T ss_pred HHHHH-HHHHhcCCCCCEEEE--eCc-------------------------------------cCc---------hHHHH
Confidence 55554 3445556 466654 321 121 22335
Q ss_pred HHHHHHHhhCCCCEEEEe-cCCHHHHHHHHHcCCcEEEEecCCCCCC--------CCCcchHHHHHHHHHHhcCCceEEE
Q 021614 155 KDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--------DYVPATIMALEEVVKATQGRIPVFL 225 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~~aGad~I~v~~~gg~~~--------~~~~~~~~~l~~i~~~~~~~ipvia 225 (310)
+.++++|+.++.|+++++ +.+.+.++.+.++|||+|.+++++|+.. ....+.+..+.+++++. ++|||+
T Consensus 126 ~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~--~~pVIa 203 (321)
T TIGR01306 126 NMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIA 203 (321)
T ss_pred HHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhc--CCeEEE
Confidence 789999999988855554 8999999999999999999997655421 11123456788888765 799999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEcHHHHH--------------------Hhh---h-------ccH-------HHHHHHH
Q 021614 226 DGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLA---A-------EGE-------KGVRRVL 268 (310)
Q Consensus 226 ~GGI~~~~dv~k~l~~GAd~V~ig~~~l~--------------------~~~---~-------~G~-------~~v~~~l 268 (310)
+|||+++.|+.|+|++|||+||+||+|-- ++. . +|. -.+.+++
T Consensus 204 dGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~ 283 (321)
T TIGR01306 204 DGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGEHKNVEGKKMFVEHKGSLSDTL 283 (321)
T ss_pred ECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccccccccceEEEeccCCCHHHHH
Confidence 99999999999999999999999998821 110 0 010 1388999
Q ss_pred HHHHHHHHHHHHHcCCCCHhhhcccceecccCC
Q 021614 269 EMLREEFELAMALSGCRSLKEITRDHIVTEWDA 301 (310)
Q Consensus 269 ~~l~~~l~~~m~~~G~~~i~~l~~~~~~~~~~~ 301 (310)
.++..+|++.|.++|+.++++|++..+......
T Consensus 284 ~~~~~glr~~~~~~G~~~l~~~~~~~~~~~~~~ 316 (321)
T TIGR01306 284 IEMQQDLQSSISYAGGKDLDSLRTVDYVIVKNS 316 (321)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHhhCCEEEEecC
Confidence 999999999999999999999998765554443
No 20
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.94 E-value=1.4e-24 Score=207.10 Aligned_cols=262 Identities=25% Similarity=0.236 Sum_probs=183.8
Q ss_pred ccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChHHHHHHHHHHHHc
Q 021614 9 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERA 88 (310)
Q Consensus 9 ~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~~~~~~i~~~~~~ 88 (310)
.+..||+++||+++.+ +.+...+|+.++.+.|....+++.. .+.+++.... ....|+- ..........++
T Consensus 75 ~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~~~~--~~i~q~~-~~~fGv~~~~~~----- 144 (392)
T cd02808 75 KLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEGG-ELPEEREGGG--DIIKQVA-SGRFGVRPEYLN----- 144 (392)
T ss_pred ccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCCC-CCHHHHhhhh--heEEEec-CCCCccCHHHcc-----
Confidence 3579999999997765 5667789999999999998888754 5666654221 2334542 111112122221
Q ss_pred CCcEEEEeeCC---CCCCcchHHhhhccCCCC-cccccccccccccccccccchhhHHHhhhccCCccc-----HHHHHH
Q 021614 89 GFKAIALTVDT---PRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS-----WKDVKW 159 (310)
Q Consensus 89 G~~~i~i~~~~---p~~~~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~ 159 (310)
.++.|++-++- |..|- .+|. |++.--.. ..+ .+..++.+++..++++. .+.|++
T Consensus 145 ~~~~ieik~~QGAkpg~gg---------~l~~~Kv~~eiA~-------~r~-~~~g~~~isp~~~~~~~~~~~l~~~I~~ 207 (392)
T cd02808 145 KADAIEIKIGQGAKPGEGG---------HLPGEKVTEEIAK-------IRG-IPPGVDLISPPPHHDIYSIEDLAQLIED 207 (392)
T ss_pred cCcEEEEEeccCCCCCCCC---------ccccccCCHHHHH-------HhC-CCCCccccCCCCCCCCCCHHHHHHHHHH
Confidence 15677776551 11110 1111 12110000 000 12234566666666664 677999
Q ss_pred HHhhCC-CCEEEEecCC--HHHHHHHHHcC-CcEEEEecCCCCC--------CCCCcchHHHHHHHHHHh-----cCCce
Q 021614 160 LQTITK-LPILVKGVLT--AEDARIAVQAG-AAGIIVSNHGARQ--------LDYVPATIMALEEVVKAT-----QGRIP 222 (310)
Q Consensus 160 ir~~~~-~pv~vK~~~~--~~~a~~~~~aG-ad~I~v~~~gg~~--------~~~~~~~~~~l~~i~~~~-----~~~ip 222 (310)
+|+.++ +||++|++.. .+++..+.+.| +|+|+++|++|.+ .+++.++...|.++.+.+ +.++|
T Consensus 208 lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~ 287 (392)
T cd02808 208 LREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVS 287 (392)
T ss_pred HHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCe
Confidence 999998 9999999864 66655555555 9999999986432 234677888888877654 34799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhc-----------------------------cHHHHHHHHHHHHH
Q 021614 223 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLRE 273 (310)
Q Consensus 223 via~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~~l~~l~~ 273 (310)
|+++|||+++.|+.|++++|||+|++||++++++.|. |.++|.++++.+..
T Consensus 288 viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~ 367 (392)
T cd02808 288 LIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAE 367 (392)
T ss_pred EEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987554 77889999999999
Q ss_pred HHHHHHHHcCCCCHhhhcccceec
Q 021614 274 EFELAMALSGCRSLKEITRDHIVT 297 (310)
Q Consensus 274 ~l~~~m~~~G~~~i~~l~~~~~~~ 297 (310)
||+.+|..+|++++++++++++..
T Consensus 368 el~~~m~~~G~~~~~~l~~~~l~~ 391 (392)
T cd02808 368 ELRELAAALGKRSLELLGRSDLLA 391 (392)
T ss_pred HHHHHHHHhCCCChHHCCHHHhhc
Confidence 999999999999999999988754
No 21
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.94 E-value=7.1e-25 Score=202.75 Aligned_cols=238 Identities=23% Similarity=0.316 Sum_probs=174.2
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCC-CC--------------------------CCC
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WS--------------------------TSS 53 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~-~~--------------------------~~~ 53 (310)
++|+|+|.+|++||++||+..+. . +..++..+ +.|..++++. .. +..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~-~----~~~~~~~~-~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGS-G----VESLRRID-RSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCC-C----HHHHHHHH-HcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 58999999999999999953321 1 33455444 4588877661 11 112
Q ss_pred HH----HHHcc-C--CCceeEEEEecCChHHHHHHHHHHHHcC--CcEEEEeeCCCCCCcchHHhhhccCCCCccccccc
Q 021614 54 VE----EVAST-G--PGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 124 (310)
Q Consensus 54 ~e----~i~~~-~--~~~~~~ql~~~~d~~~~~~~i~~~~~~G--~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~ 124 (310)
.+ .+.+. . +.+.++|++ +.+++.+.+.++.+++++ ++.|++|++||....+
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~------------------- 134 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGG------------------- 134 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCC-------------------
Confidence 22 22211 1 126788998 788999999999988763 8999999999985110
Q ss_pred ccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCH----HHHHHHHHcCCcEEEEecCC-CCC
Q 021614 125 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHG-ARQ 199 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~----~~a~~~~~aGad~I~v~~~g-g~~ 199 (310)
+..+ ..++++..++++++|+.+++||++|+..+. +.++.+.++|+|+|+++|+. ++.
T Consensus 135 ----------------g~~l--~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~ 196 (300)
T TIGR01037 135 ----------------GIAI--GQDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMK 196 (300)
T ss_pred ----------------cccc--ccCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccc
Confidence 0011 125566789999999999999999998553 44788999999999998742 211
Q ss_pred C------------C---CCcc----hHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhcc
Q 021614 200 L------------D---YVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 260 (310)
Q Consensus 200 ~------------~---~~~~----~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G 260 (310)
. . .++. .+..+.++++.+ ++|||++|||++++|+.+++.+|||+|++||++++. +
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~----p 270 (300)
T TIGR01037 197 IDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR----G 270 (300)
T ss_pred cccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC----c
Confidence 0 0 1121 235566666655 699999999999999999999999999999999863 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021614 261 EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 293 (310)
Q Consensus 261 ~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (310)
.++..++++|..+|..+|+++++|+++.
T Consensus 271 -----~~~~~i~~~l~~~~~~~g~~~~~e~~g~ 298 (300)
T TIGR01037 271 -----FAFKKIIEGLIAFLKAEGFTSIEELIGI 298 (300)
T ss_pred -----hHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 4678999999999999999999999864
No 22
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=6.9e-25 Score=203.82 Aligned_cols=252 Identities=24% Similarity=0.288 Sum_probs=197.1
Q ss_pred eecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCC-eeEeCCCCC-CCH--------HHHHcc-CCCceeEEEEec
Q 021614 4 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWST-SSV--------EEVAST-GPGIRFFQLYVY 72 (310)
Q Consensus 4 ~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~-~~~~~~~~~-~~~--------e~i~~~-~~~~~~~ql~~~ 72 (310)
++....+..++++|||++. + |.++++.++++|. ..++|+|.+ ..+ ..+... ...+..+||. +
T Consensus 3 ~~~~~~~~~~~~lAPM~gv--t----d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g 75 (323)
T COG0042 3 KIGLIELRNRVILAPMAGV--T----DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLG-G 75 (323)
T ss_pred ccccccccCcEEEecCCCC--c----cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEec-C
Confidence 3455677899999999885 3 8899999999999 999998832 111 111111 1236788999 8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcc
Q 021614 73 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 152 (310)
Q Consensus 73 ~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (310)
+|++.+.+..+.+.+.|++.|+||++||++ +++. .+.++.++ .+|+.
T Consensus 76 sdp~~l~eaA~~~~~~g~~~IdlN~GCP~~---------------~V~~----------------~g~Ga~Ll--~~p~l 122 (323)
T COG0042 76 SDPELLAEAAKIAEELGADIIDLNCGCPSP---------------KVVK----------------GGAGAALL--KNPEL 122 (323)
T ss_pred CCHHHHHHHHHHHHhcCCCEEeeeCCCChH---------------HhcC----------------CCcchhhc--CCHHH
Confidence 999999999999999999999999999996 2321 23334444 48888
Q ss_pred cHHHHHHHHhhC-CCCEEEEecCC--------HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceE
Q 021614 153 SWKDVKWLQTIT-KLPILVKGVLT--------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 223 (310)
Q Consensus 153 ~~~~i~~ir~~~-~~pv~vK~~~~--------~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 223 (310)
..+.|+.+++.+ ++||.||++.. .+.++.+.++|++.++|+++...+.+.++..|+.+.++++.++. +||
T Consensus 123 v~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~-ipv 201 (323)
T COG0042 123 LAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPS-IPV 201 (323)
T ss_pred HHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCC-CeE
Confidence 999999999999 59999999732 34678899999999999887655555677899999999998843 999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEEEEcHHH-----HHHh---hhccH---HHHHHHHHHHHHHHHHHHHHcCCCCHhhhc
Q 021614 224 FLDGGVRRGTDVFKALA-LGASGIFIGRPV-----VYSL---AAEGE---KGVRRVLEMLREEFELAMALSGCRSLKEIT 291 (310)
Q Consensus 224 ia~GGI~~~~dv~k~l~-~GAd~V~ig~~~-----l~~~---~~~G~---~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~ 291 (310)
|++|+|.+.+|+.++++ .|+|+||+||.. ++.. ...|. ....+.++.+..+++.+..+.|...+..++
T Consensus 202 i~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r 281 (323)
T COG0042 202 IANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLR 281 (323)
T ss_pred EeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 99999999999999999 589999999954 4431 12233 456778889999999999999966788888
Q ss_pred cccee
Q 021614 292 RDHIV 296 (310)
Q Consensus 292 ~~~~~ 296 (310)
++..+
T Consensus 282 ~h~~~ 286 (323)
T COG0042 282 KHLGY 286 (323)
T ss_pred HHHHH
Confidence 87433
No 23
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.93 E-value=8.4e-24 Score=195.80 Aligned_cols=242 Identities=19% Similarity=0.178 Sum_probs=172.9
Q ss_pred cceeeccccccccCCCHHHHHHHHHHHHcC-CeeEeCCCCCC--------CHHHHHc------cC--CCceeEEEEecCC
Q 021614 12 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWSTS--------SVEEVAS------TG--PGIRFFQLYVYKD 74 (310)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~la~~a~~~g-~~~~~~~~~~~--------~~e~i~~------~~--~~~~~~ql~~~~d 74 (310)
+|+++|||+|. + |.++++.|+++| ..+++++|-+. ....+.. .. +.+..+||+ ++|
T Consensus 1 ~~~~lAPMag~--t----d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGV--L----DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCC--c----CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 58999999886 3 889999999999 79999987321 1111111 11 247889999 899
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccH
Q 021614 75 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 154 (310)
Q Consensus 75 ~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (310)
++.+.+.++++++.|++.|+||++||++ ++.. .+.+..+. .+|++..
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~---------------~v~~----------------~g~Gs~Ll--~~~~~~~ 120 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK---------------TVNG----------------SGGGATLL--KDPELIY 120 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch---------------HHhc----------------CCCchHhh--cCHHHHH
Confidence 9999999999999999999999999985 2211 12233333 3778889
Q ss_pred HHHHHHHhhC--CCCEEEEecCC-------HHHHHHHHHcCCcEEEEecCCCCCCCCCcc-hHHHHHHHHHHhcCCceEE
Q 021614 155 KDVKWLQTIT--KLPILVKGVLT-------AEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVF 224 (310)
Q Consensus 155 ~~i~~ir~~~--~~pv~vK~~~~-------~~~a~~~~~aGad~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi 224 (310)
++++.+++.+ ++||.+|+... .+.++.+.++|+|+|+|+++...+.+.+++ .|+.+.++++.+ ++|||
T Consensus 121 eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi 198 (312)
T PRK10550 121 QGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVI 198 (312)
T ss_pred HHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEE
Confidence 9999999987 49999998632 245788999999999998765444444543 788888888876 79999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEEcHHHH-----HHhhhccH--HHHHHHHHHHHHHHHHHHHHcCC-CCHhhhcccce
Q 021614 225 LDGGVRRGTDVFKALA-LGASGIFIGRPVV-----YSLAAEGE--KGVRRVLEMLREEFELAMALSGC-RSLKEITRDHI 295 (310)
Q Consensus 225 a~GGI~~~~dv~k~l~-~GAd~V~ig~~~l-----~~~~~~G~--~~v~~~l~~l~~~l~~~m~~~G~-~~i~~l~~~~~ 295 (310)
++|||.|++|+.++++ .|||+||+||+++ +.....|. ....+.++.+..+++......+. ..+.++|++..
T Consensus 199 ~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~ 278 (312)
T PRK10550 199 ANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLG 278 (312)
T ss_pred EeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 9999999999999997 6899999999654 33222221 22334555555555432222222 23566666543
No 24
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.92 E-value=1e-23 Score=196.59 Aligned_cols=248 Identities=21% Similarity=0.254 Sum_probs=181.7
Q ss_pred ecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCC-CCCH-------HHHHccCC--CceeEEEEecCC
Q 021614 5 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS-TSSV-------EEVASTGP--GIRFFQLYVYKD 74 (310)
Q Consensus 5 l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~-~~~~-------e~i~~~~~--~~~~~ql~~~~d 74 (310)
|.|..+..|+++|||.+. + |.++++.++++|..++++++- +..+ .+.....+ .+..+|+. +++
T Consensus 1 ~~~~~~~~~l~lAPm~~~--t----~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~ 73 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGV--T----DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSD 73 (319)
T ss_pred CCCccCCCCEEecCCCCC--C----cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCC
Confidence 356788999999999886 3 789999999999999988873 2111 11222222 36778998 889
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccH
Q 021614 75 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 154 (310)
Q Consensus 75 ~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (310)
++.+.+.+++++++|+++|++|++||.. ++. + .+.+..+. .++++..
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~-~~~-~-----------------------------~~~Gs~l~--~~~~~~~ 120 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVP-KIT-K-----------------------------KGAGSALL--RDPDLIG 120 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHH-Hhc-C-----------------------------CCccchHh--CCHHHHH
Confidence 9999999999999999999999999963 111 0 01122222 2677788
Q ss_pred HHHHHHHhhCCCCEEEEecC--------CHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEe
Q 021614 155 KDVKWLQTITKLPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 226 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~--------~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~ 226 (310)
++++.+++.+++||.+|+.. ..+.++.+.++|+|+|+++++...+...++..++.+.++++.+ ++||+++
T Consensus 121 ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~n 198 (319)
T TIGR00737 121 KIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGN 198 (319)
T ss_pred HHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEe
Confidence 99999999999999999852 1355788999999999997653333233456788888888776 6999999
Q ss_pred cCCCCHHHHHHHHH-cCCCEEEEcHHHHHHh-----h----hccH----HHHHHHHHHHHHHHHHHHHHcCCC-CHhhhc
Q 021614 227 GGVRRGTDVFKALA-LGASGIFIGRPVVYSL-----A----AEGE----KGVRRVLEMLREEFELAMALSGCR-SLKEIT 291 (310)
Q Consensus 227 GGI~~~~dv~k~l~-~GAd~V~ig~~~l~~~-----~----~~G~----~~v~~~l~~l~~~l~~~m~~~G~~-~i~~l~ 291 (310)
|||++++|+.++++ .|||+||+||+++... . ..|. ....+.++.+.++++....+.|.. .+..++
T Consensus 199 GgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r 278 (319)
T TIGR00737 199 GDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIAR 278 (319)
T ss_pred CCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHH
Confidence 99999999999995 7899999999876431 0 1121 234456677777787777777743 466666
Q ss_pred ccc
Q 021614 292 RDH 294 (310)
Q Consensus 292 ~~~ 294 (310)
++.
T Consensus 279 ~~~ 281 (319)
T TIGR00737 279 KHI 281 (319)
T ss_pred HHH
Confidence 553
No 25
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.92 E-value=4.2e-23 Score=190.99 Aligned_cols=239 Identities=22% Similarity=0.263 Sum_probs=177.6
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeC-CCCC--------------------------CC
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------SS 53 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~-~~~~--------------------------~~ 53 (310)
++|+++|.+|++||++|+-..+ . +..+.+.+.+.|..+++. |.+. ..
T Consensus 2 l~~~~~G~~~~nPv~~aag~~~----~--~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g 75 (301)
T PRK07259 2 LSVELPGLKLKNPVMPASGTFG----F--GGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPG 75 (301)
T ss_pred CceEECCEECCCCcEECCcCCC----C--CHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcC
Confidence 5899999999999999985332 1 235677777777665543 3321 11
Q ss_pred HH----HHHcc---CCCceeEEEEecCChHHHHHHHHHHHHcC-CcEEEEeeCCCCCCcchHHhhhccCCCCcccccccc
Q 021614 54 VE----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ 125 (310)
Q Consensus 54 ~e----~i~~~---~~~~~~~ql~~~~d~~~~~~~i~~~~~~G-~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~ 125 (310)
++ ++.+. ...+.++|+. ..+++.+.+.+++++++| +++|++|+.||....
T Consensus 76 ~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~--------------------- 133 (301)
T PRK07259 76 VDAFIEEELPWLEEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKH--------------------- 133 (301)
T ss_pred HHHHHHHHHHHHhccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCC---------------------
Confidence 12 22221 1236788997 678999999999999999 999999999987410
Q ss_pred cccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCH----HHHHHHHHcCCcEEEEecCC-CCC-
Q 021614 126 GLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHG-ARQ- 199 (310)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~----~~a~~~~~aGad~I~v~~~g-g~~- 199 (310)
+ +..+ ..++++.+++++++|+.+++||++|+..+. +.++.+.++|+|+|+++|+. +..
T Consensus 134 -------------g-g~~~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~ 197 (301)
T PRK07259 134 -------------G-GMAF--GTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAI 197 (301)
T ss_pred -------------C-cccc--ccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEcccccccc
Confidence 0 0001 125566789999999999999999998654 34788999999999987632 110
Q ss_pred --------------CCCC----cchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccH
Q 021614 200 --------------LDYV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 261 (310)
Q Consensus 200 --------------~~~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~ 261 (310)
...+ +..+..+.++++.+ ++|||++|||++++|+.+++++|||+|++||+++++ +
T Consensus 198 ~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~-----P 270 (301)
T PRK07259 198 DIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYD-----P 270 (301)
T ss_pred ccccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcC-----c
Confidence 0011 22456777777766 799999999999999999999999999999999863 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021614 262 KGVRRVLEMLREEFELAMALSGCRSLKEITRDH 294 (310)
Q Consensus 262 ~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (310)
.++..++++++.+|...|+++++++++..
T Consensus 271 ----~~~~~i~~~l~~~~~~~g~~~i~~~~g~~ 299 (301)
T PRK07259 271 ----YAFPKIIEGLEAYLDKYGIKSIEEIVGIA 299 (301)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCCHHHHhCcc
Confidence 46788999999999999999999998743
No 26
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.92 E-value=2.1e-23 Score=193.44 Aligned_cols=240 Identities=18% Similarity=0.205 Sum_probs=171.6
Q ss_pred ceeeccccccccCCCHHHHHHHHHHHHcCC-eeEeCCCCC-CC-----HHHHHccCC--CceeEEEEecCChHHHHHHHH
Q 021614 13 PIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWST-SS-----VEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 83 (310)
Q Consensus 13 Pi~iapm~~~~~~~~~~~~~la~~a~~~g~-~~~~~~~~~-~~-----~e~i~~~~~--~~~~~ql~~~~d~~~~~~~i~ 83 (310)
|+++|||++. + |.++++.|+++|. .+++++|-+ .. .++.....+ .+..+||+ ++|++.+.+.++
T Consensus 2 ~~~lAPM~g~--T----d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDW--T----DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCC--c----CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 7999999886 3 7899999999998 788998832 11 122222222 37889999 899999999999
Q ss_pred HHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhh
Q 021614 84 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 163 (310)
Q Consensus 84 ~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~ 163 (310)
.+++.|++.|+||++||.. ++.. .+.+..++ .+|+...++++.+++.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~---------------~v~~----------------~g~Gs~Ll--~~p~~~~~iv~av~~~ 121 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSD---------------RVQN----------------GNFGACLM--GNADLVADCVKAMQEA 121 (318)
T ss_pred HHHhCCCCEEEEECCCCHH---------------HhCC----------------CCeehHhh--cCHHHHHHHHHHHHHH
Confidence 9999999999999999996 1110 11222333 3778888999999999
Q ss_pred CCCCEEEEecCC----------HHHHHHHHHcCCcEEEEecCCC-CCCC-------CCcchHHHHHHHHHHhcCCceEEE
Q 021614 164 TKLPILVKGVLT----------AEDARIAVQAGAAGIIVSNHGA-RQLD-------YVPATIMALEEVVKATQGRIPVFL 225 (310)
Q Consensus 164 ~~~pv~vK~~~~----------~~~a~~~~~aGad~I~v~~~gg-~~~~-------~~~~~~~~l~~i~~~~~~~ipvia 225 (310)
+++||.+|+... .+.++.+.++|+|.|.++++.. .+.. ..+..|+.+.++++.+ .++|||+
T Consensus 122 ~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~-~~ipVi~ 200 (318)
T TIGR00742 122 VNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDF-PHLTIEI 200 (318)
T ss_pred hCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhC-CCCcEEE
Confidence 999999999742 1336888999999999987642 1111 1223577777777665 2699999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEcHHHH-----HHhhh----cc---HHHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021614 226 DGGVRRGTDVFKALALGASGIFIGRPVV-----YSLAA----EG---EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 293 (310)
Q Consensus 226 ~GGI~~~~dv~k~l~~GAd~V~ig~~~l-----~~~~~----~G---~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (310)
+|||+|.+|+.+++. |||+||+||+++ +.... .| .....+.++.+.++++..... ...+.++|++
T Consensus 201 NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~rk~ 277 (318)
T TIGR00742 201 NGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ--GLSLNHITRH 277 (318)
T ss_pred ECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHH
Confidence 999999999999986 999999999654 32111 11 123445666666777665433 2457777776
Q ss_pred cee
Q 021614 294 HIV 296 (310)
Q Consensus 294 ~~~ 296 (310)
..+
T Consensus 278 ~~~ 280 (318)
T TIGR00742 278 LLG 280 (318)
T ss_pred HHH
Confidence 443
No 27
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.92 E-value=7.1e-23 Score=191.09 Aligned_cols=238 Identities=19% Similarity=0.208 Sum_probs=169.8
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeC-CCCC----------------------------
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST---------------------------- 51 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~-~~~~---------------------------- 51 (310)
++|+++|.+|++||++|+-+.+. +....+.+.+.|..+++. |.+.
T Consensus 2 L~v~~~Gl~l~nPv~~ASg~~~~------~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in 75 (325)
T cd04739 2 LSTTYLGLSLKNPLVASASPLSR------NLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFP 75 (325)
T ss_pred ceEEECCEecCCCCEeCCcCCCC------CHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccc
Confidence 58999999999999998654431 223334466666555443 2110
Q ss_pred ------CCH----HHHHcc---CCCceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCc
Q 021614 52 ------SSV----EEVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 118 (310)
Q Consensus 52 ------~~~----e~i~~~---~~~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~ 118 (310)
..+ +++.+. ...+.++|+. ..+.+.+.+.++.+++.|+++|++|+.||... | .
T Consensus 76 ~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~------------~-~ 141 (325)
T cd04739 76 EYGRYNLGPEEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTD------------P-D 141 (325)
T ss_pred cccccCcCHHHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC------------C-C
Confidence 001 122221 1236778986 67788889999999999999999999985320 0 0
Q ss_pred ccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCC----HHHHHHHHHcCCcEEEEec
Q 021614 119 LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~----~~~a~~~~~aGad~I~v~~ 194 (310)
. . +.+ .++...+.++++++.+++||++|+... .+.++.+.++|+|+|+++|
T Consensus 142 ~-----~-------------g~~-------~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~n 196 (325)
T cd04739 142 I-----S-------------GAE-------VEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred c-----c-------------cch-------HHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEc
Confidence 0 0 000 012345889999999999999998754 4568889999999999999
Q ss_pred CCC-CCCC------------CC----cchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhh
Q 021614 195 HGA-RQLD------------YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 257 (310)
Q Consensus 195 ~gg-~~~~------------~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~ 257 (310)
+.. ...+ ++ +..+..+.++++.+ ++|||++|||+|++|+.++|.+|||+|++||++++
T Consensus 197 t~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~--- 271 (325)
T cd04739 197 RFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR--- 271 (325)
T ss_pred CcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh---
Confidence 641 1111 11 12344555555544 79999999999999999999999999999999987
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021614 258 AEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 293 (310)
Q Consensus 258 ~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (310)
.|. .++..+.+||..+|...|+++++|+++.
T Consensus 272 -~gp----~~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 272 -HGP----DYIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred -cCc----hHHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 355 3678899999999999999999999984
No 28
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.91 E-value=2.3e-22 Score=185.61 Aligned_cols=237 Identities=22% Similarity=0.261 Sum_probs=174.0
Q ss_pred ceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCC-CCCCC--------------------------H
Q 021614 2 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WSTSS--------------------------V 54 (310)
Q Consensus 2 ~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~-~~~~~--------------------------~ 54 (310)
+|+++|.+|++||++|+-... ....+++.+...|..+++.. .+..+ +
T Consensus 1 ~~~~~G~~~~nP~~~aag~~~------~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILASGTFG------FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECCCCCC------CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 589999999999999953221 13456666665557666543 22111 1
Q ss_pred H----HHHcc---CCCceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccc
Q 021614 55 E----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 127 (310)
Q Consensus 55 e----~i~~~---~~~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~ 127 (310)
+ ++.+. ...+.++|+. ..+.+.+.+.+++++++|+++|++|+.||....+-
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g--------------------- 132 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGG--------------------- 132 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCc---------------------
Confidence 2 22221 1236788998 67889999999999999999999999999852110
Q ss_pred cccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCH----HHHHHHHHcCCcEEEEecCC-CCCC--
Q 021614 128 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNHG-ARQL-- 200 (310)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~----~~a~~~~~aGad~I~v~~~g-g~~~-- 200 (310)
..+. .++++..++++++|+.+++||++|+..+. +.++.+.++|+|+|+++|+. +...
T Consensus 133 -------------~~~~---~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~ 196 (296)
T cd04740 133 -------------MAFG---TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDI 196 (296)
T ss_pred -------------cccc---CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCccccccc
Confidence 0011 24556678999999999999999987543 45788999999999998742 1100
Q ss_pred -------------CCCc----chHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHH
Q 021614 201 -------------DYVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 263 (310)
Q Consensus 201 -------------~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~ 263 (310)
..++ ..+..+.++++.+ ++|||++|||++++|+.+++++|||+|++||++++. +
T Consensus 197 ~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~-----p-- 267 (296)
T cd04740 197 ETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVD-----P-- 267 (296)
T ss_pred ccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcC-----h--
Confidence 0111 2356677777665 799999999999999999999999999999999863 3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021614 264 VRRVLEMLREEFELAMALSGCRSLKEITRD 293 (310)
Q Consensus 264 v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (310)
.++..++++|.++|..+|+.++.|+++.
T Consensus 268 --~~~~~i~~~l~~~~~~~g~~~~~~~~g~ 295 (296)
T cd04740 268 --EAFKEIIEGLEAYLDEEGIKSIEELVGL 295 (296)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 4678899999999999999999999864
No 29
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.91 E-value=1.5e-22 Score=189.81 Aligned_cols=239 Identities=19% Similarity=0.205 Sum_probs=169.6
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeC-CCC-----------------------------
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS----------------------------- 50 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~-~~~----------------------------- 50 (310)
++|+++|.+|++||++|+-+.+. +....+.+.+.|....+. |.+
T Consensus 3 l~~~~~Gl~l~nPv~~asg~~~~------~~~~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (334)
T PRK07565 3 LSTTYLGLTLRNPLVASASPLSE------SVDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDYF 76 (334)
T ss_pred ceEEECCEecCCCCEecCcCCCC------CHHHHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhhh
Confidence 57999999999999998876541 112233366676665443 211
Q ss_pred ------CCCHHH----HHc---cCCCceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCC
Q 021614 51 ------TSSVEE----VAS---TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 117 (310)
Q Consensus 51 ------~~~~e~----i~~---~~~~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~ 117 (310)
...+++ +.+ ....+.+.|+. ..+.+.+.+++++++++|+++|++|+.||.... +
T Consensus 77 n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~-g~~~~e~~~~a~~~~~agad~ielN~scpp~~~---~--------- 143 (334)
T PRK07565 77 PEPAKFYVGPEEYLELIRRAKEAVDIPVIASLN-GSSAGGWVDYARQIEQAGADALELNIYYLPTDP---D--------- 143 (334)
T ss_pred hhhhccCcCHHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC---C---------
Confidence 011111 111 11236778987 567788888899999999999999999865310 0
Q ss_pred cccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCC----HHHHHHHHHcCCcEEEEe
Q 021614 118 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~----~~~a~~~~~aGad~I~v~ 193 (310)
. .+.. .++..++.++++++.+++||++|+... .+.++.+.++|+|+|+++
T Consensus 144 -~------------------~g~~-------~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 144 -I------------------SGAE-------VEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred -C------------------cccc-------HHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 0 0000 012246889999999999999998743 355788999999999999
Q ss_pred cCCC-CCCC---------C---C----cchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHh
Q 021614 194 NHGA-RQLD---------Y---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 256 (310)
Q Consensus 194 ~~gg-~~~~---------~---~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~ 256 (310)
|+.. ...+ + + +..+..+.++++.+ ++|||++|||+|++|+.|+|.+|||+|++||++++
T Consensus 198 n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~-- 273 (334)
T PRK07565 198 NRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR-- 273 (334)
T ss_pred CCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh--
Confidence 8642 1111 1 1 12234455555554 79999999999999999999999999999999987
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021614 257 AAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 294 (310)
Q Consensus 257 ~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (310)
.|. +++..+.+||+.+|..+|+++++|+++..
T Consensus 274 --~g~----~~~~~i~~~L~~~l~~~g~~~i~e~~g~~ 305 (334)
T PRK07565 274 --HGP----DYIGTILRGLEDWMERHGYESLQQFRGSM 305 (334)
T ss_pred --hCc----HHHHHHHHHHHHHHHHcCCCCHHHHhccc
Confidence 354 47789999999999999999999999853
No 30
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.91 E-value=3.6e-22 Score=182.42 Aligned_cols=228 Identities=22% Similarity=0.267 Sum_probs=164.1
Q ss_pred ccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHH----HHccCCC-ceeEEEEecCChHHHHHHHH
Q 021614 9 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE----VASTGPG-IRFFQLYVYKDRNVVAQLVR 83 (310)
Q Consensus 9 ~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~----i~~~~~~-~~~~ql~~~~d~~~~~~~i~ 83 (310)
.+..|++-|.|--. ++..+|.+..++|.-.++.-. .++|+ +....+. ...+-+-.+..++..++ ++
T Consensus 43 ~~~iPii~AnMdtv------~~~~mA~~la~~g~~~~iHk~--~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er-~~ 113 (343)
T TIGR01305 43 YSGVPIIAANMDTV------GTFEMAAALSQHSIFTAIHKH--YSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEK-MT 113 (343)
T ss_pred eeCCceEecCCCcc------cCHHHHHHHHHCCCeEEEeeC--CCHHHHHHHHHhhcccccceEEEEeccCHHHHHH-HH
Confidence 67999999999332 267999999999988887652 23333 2221221 11111222333333333 34
Q ss_pred HHHHc--CCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHH
Q 021614 84 RAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQ 161 (310)
Q Consensus 84 ~~~~~--G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir 161 (310)
.+.++ +++.|.|.+- .+++. ...+.|+++|
T Consensus 114 ~L~~a~~~~d~iviD~A---------------------------------------hGhs~---------~~i~~ik~ir 145 (343)
T TIGR01305 114 SILEAVPQLKFICLDVA---------------------------------------NGYSE---------HFVEFVKLVR 145 (343)
T ss_pred HHHhcCCCCCEEEEECC---------------------------------------CCcHH---------HHHHHHHHHH
Confidence 44445 5787766321 12222 2357899999
Q ss_pred hhCCCCEEEEe-cCCHHHHHHHHHcCCcEEEEe-----cCCCCCCCCCc-chHHHHHHHHHHhcC-CceEEEecCCCCHH
Q 021614 162 TITKLPILVKG-VLTAEDARIAVQAGAAGIIVS-----NHGARQLDYVP-ATIMALEEVVKATQG-RIPVFLDGGVRRGT 233 (310)
Q Consensus 162 ~~~~~pv~vK~-~~~~~~a~~~~~aGad~I~v~-----~~gg~~~~~~~-~~~~~l~~i~~~~~~-~ipvia~GGI~~~~ 233 (310)
+.++.+.++|+ +.|+++++.++++|||+|.|+ +|++++.++.. +.+.++.+++++... ++|||++|||+++.
T Consensus 146 ~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~g 225 (343)
T TIGR01305 146 EAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPG 225 (343)
T ss_pred hhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchh
Confidence 99976666676 899999999999999999998 67777777644 889999999887765 79999999999999
Q ss_pred HHHHHHHcCCCEEEEcHHHHH--------------------Hhhh-----------------ccH-------HHHHHHHH
Q 021614 234 DVFKALALGASGIFIGRPVVY--------------------SLAA-----------------EGE-------KGVRRVLE 269 (310)
Q Consensus 234 dv~k~l~~GAd~V~ig~~~l~--------------------~~~~-----------------~G~-------~~v~~~l~ 269 (310)
|++|||++|||+||+|+.+-- +++. +|. -.+.+++.
T Consensus 226 DI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~ 305 (343)
T TIGR01305 226 DVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYRASEGKTVEVPYRGDVENTIL 305 (343)
T ss_pred HHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhhccCcccccccccCceEEeccCCcHHHHHH
Confidence 999999999999999976621 1100 111 13788999
Q ss_pred HHHHHHHHHHHHcCCCCHhhhccc
Q 021614 270 MLREEFELAMALSGCRSLKEITRD 293 (310)
Q Consensus 270 ~l~~~l~~~m~~~G~~~i~~l~~~ 293 (310)
++..+|++.|.++|..++.+|+++
T Consensus 306 ~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 306 DILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred HHHHHHHHHhhccCcCcHHHHHhC
Confidence 999999999999999999999766
No 31
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.90 E-value=2.2e-23 Score=193.26 Aligned_cols=241 Identities=25% Similarity=0.312 Sum_probs=161.7
Q ss_pred eeccccccccCCCHHHHHHHHHHHHcCCe-eEeCCCCCC-----C---HHHHHccCC--CceeEEEEecCChHHHHHHHH
Q 021614 15 MIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWSTS-----S---VEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 83 (310)
Q Consensus 15 ~iapm~~~~~~~~~~~~~la~~a~~~g~~-~~~~~~~~~-----~---~e~i~~~~~--~~~~~ql~~~~d~~~~~~~i~ 83 (310)
++|||.+. + |.++++.++++|.. .+++++-+. . ..+.....+ .+..+||. ++|++.+.+.++
T Consensus 1 ~LAPM~g~--t----d~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~-g~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGV--T----DLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLF-GNDPEDLAEAAE 73 (309)
T ss_dssp -E---TTT--S----SHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCC--c----hHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEe-eccHHHHHHHHH
Confidence 58999875 3 78999999999999 999987421 1 011111222 37899999 899999999999
Q ss_pred HHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhh
Q 021614 84 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 163 (310)
Q Consensus 84 ~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~ 163 (310)
.+.+.|++.|+||++||++ +++. .+.+..++ .+|+...++++.+++.
T Consensus 74 ~~~~~~~~~IDlN~GCP~~---------------~v~~----------------~g~Ga~Ll--~~p~~~~~iv~~~~~~ 120 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP---------------KVTK----------------GGAGAALL--KDPDLLAEIVKAVRKA 120 (309)
T ss_dssp HHCCTT-SEEEEEE---SH---------------HHHH----------------CT-GGGGG--C-HHHHHHHHHHHHHH
T ss_pred hhhccCCcEEeccCCCCHH---------------HHhc----------------CCcChhhh--cChHHhhHHHHhhhcc
Confidence 9888999999999999995 2211 12334444 3788888999999999
Q ss_pred CCCCEEEEecC--C------HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHH
Q 021614 164 TKLPILVKGVL--T------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 235 (310)
Q Consensus 164 ~~~pv~vK~~~--~------~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv 235 (310)
+++||.+|+.. . .+.++.+.++|+++|+|+++...+.+.++..|+.+.++++.+ ++|||++|||.|.+|+
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDA 198 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHH
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHH
Confidence 99999999973 1 355899999999999999987767666788999999998877 5999999999999999
Q ss_pred HHHHHc-CCCEEEEcHH-----HHHHh---hhccH----HHHHHHHHHHHHHHHHHHHHcCCC-CHhhhcccceec
Q 021614 236 FKALAL-GASGIFIGRP-----VVYSL---AAEGE----KGVRRVLEMLREEFELAMALSGCR-SLKEITRDHIVT 297 (310)
Q Consensus 236 ~k~l~~-GAd~V~ig~~-----~l~~~---~~~G~----~~v~~~l~~l~~~l~~~m~~~G~~-~i~~l~~~~~~~ 297 (310)
.+.+.. |+|+||+||. |++.. ...|. ..+.+.++.+..+++......|.. .+..++++..+.
T Consensus 199 ~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y 274 (309)
T PF01207_consen 199 ERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWY 274 (309)
T ss_dssp HHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCC
T ss_pred HHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 999985 9999999994 45531 11111 114566777888888777777644 677777775443
No 32
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.90 E-value=5e-22 Score=187.58 Aligned_cols=246 Identities=20% Similarity=0.268 Sum_probs=175.1
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCC-CC--C--------------------------
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WS--T-------------------------- 51 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~-~~--~-------------------------- 51 (310)
++|+|+|.+|++||++|+-..+ . +....+.+.+.|...+|.- .+ .
T Consensus 11 Lst~~~Gl~l~NP~i~ASgp~t--~----~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~~n~i 84 (385)
T PLN02495 11 LSVTVNGLKMPNPFVIGSGPPG--T----NYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAKGRVI 84 (385)
T ss_pred ceEEECCEEcCCCcEeCCccCC--C----CHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCcccccccccccc
Confidence 5899999999999999987553 1 3345555555677766531 11 0
Q ss_pred ----------CCHH----HHHc---cCCC-ceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhcc
Q 021614 52 ----------SSVE----EVAS---TGPG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 113 (310)
Q Consensus 52 ----------~~~e----~i~~---~~~~-~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~ 113 (310)
.+++ ++.+ ..+. +.+..+.-..+.+.+.++++++++.|+++|++|+.||.... .+
T Consensus 85 Gl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~-~r------ 157 (385)
T PLN02495 85 GWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMP-ER------ 157 (385)
T ss_pred cccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCC-cC------
Confidence 0122 2221 1233 66778763368899999999999999999999999988410 00
Q ss_pred CCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCH----HHHHHHHHcCCcE
Q 021614 114 TLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAG 189 (310)
Q Consensus 114 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~----~~a~~~~~aGad~ 189 (310)
..+..+. .+++...++++++++.+++||++|+..+. +.++.+.++|+|+
T Consensus 158 -------------------------~~g~~~g--q~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadg 210 (385)
T PLN02495 158 -------------------------KMGAAVG--QDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCEG 210 (385)
T ss_pred -------------------------ccchhhc--cCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCE
Confidence 0011111 24556667889999988999999998653 4578899999999
Q ss_pred EEEecCCC--CCC----------------CC---Cc----chHHHHHHHHHHhc----CCceEEEecCCCCHHHHHHHHH
Q 021614 190 IIVSNHGA--RQL----------------DY---VP----ATIMALEEVVKATQ----GRIPVFLDGGVRRGTDVFKALA 240 (310)
Q Consensus 190 I~v~~~gg--~~~----------------~~---~~----~~~~~l~~i~~~~~----~~ipvia~GGI~~~~dv~k~l~ 240 (310)
|++.|+.. ... .+ |+ -....+.++++.+. .++||++.|||.+++|+++.|.
T Consensus 211 i~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~ 290 (385)
T PLN02495 211 VAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFIL 290 (385)
T ss_pred EEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHH
Confidence 99998532 100 01 11 12233344555442 2599999999999999999999
Q ss_pred cCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021614 241 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 294 (310)
Q Consensus 241 ~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (310)
+||++|++++++++ +|.. +++.+.++|+.+|...|+++++|+++..
T Consensus 291 aGAs~VQv~Ta~~~----~Gp~----vi~~i~~~L~~~m~~~G~~si~e~~G~~ 336 (385)
T PLN02495 291 LGADTVQVCTGVMM----HGYP----LVKNLCAELQDFMKKHNFSSIEDFRGAS 336 (385)
T ss_pred hCCCceeEeeeeee----cCcH----HHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 99999999999886 4663 6788999999999999999999999864
No 33
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.90 E-value=7.5e-22 Score=185.88 Aligned_cols=270 Identities=20% Similarity=0.268 Sum_probs=170.3
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCC----CCCCHHHHH----ccCCC---ceeEEE
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSVEEVA----STGPG---IRFFQL 69 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~----~~~~~e~i~----~~~~~---~~~~ql 69 (310)
|++.+.+.+++.||+++||++. + +..|+.++.++|...++... .....+++. ...+. ...-++
T Consensus 37 ls~~~~~~~i~~Piv~a~M~gV--t----~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~ 110 (368)
T PRK08649 37 TSWQIDAYRFEIPIIASPMDAV--V----SPETAIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQEL 110 (368)
T ss_pred eeeeecceeccCcEeccCCccc--C----CHHHHHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHHh
Confidence 4567788899999999999775 3 66999999999986566521 122333332 11110 000011
Q ss_pred E-ecCChHHHHHHHHHHHHcCCcEEEEeeCCCCC-CcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhc
Q 021614 70 Y-VYKDRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 147 (310)
Q Consensus 70 ~-~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~-~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (310)
+ .+.+++.+.++++.+++.+.. +.+.++ |.. ..+.+.+. ... ++ .+.-+-....+.+..
T Consensus 111 ~~~P~~p~l~~~iv~~~~~~~V~-v~vr~~-~~~~~e~a~~l~-eaG---------vd-----~I~vhgrt~~~~h~~-- 171 (368)
T PRK08649 111 YAEPIKPELITERIAEIRDAGVI-VAVSLS-PQRAQELAPTVV-EAG---------VD-----LFVIQGTVVSAEHVS-- 171 (368)
T ss_pred hcCCCCHHHHHHHHHHHHhCeEE-EEEecC-CcCHHHHHHHHH-HCC---------CC-----EEEEeccchhhhccC--
Confidence 1 134677888888877776422 122221 111 01111100 000 00 000000000011111
Q ss_pred cCCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCC-----CC-CCCcchHHHHHHHHHHhc---
Q 021614 148 IDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QL-DYVPATIMALEEVVKATQ--- 218 (310)
Q Consensus 148 ~~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~-----~~-~~~~~~~~~l~~i~~~~~--- 218 (310)
..-.|+.+.++++..++||+++.+.+.+.++.+.++|||+|.++..+|+ .. ..+.+.+..+.++.+..+
T Consensus 172 --~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l 249 (368)
T PRK08649 172 --KEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYL 249 (368)
T ss_pred --CcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhh
Confidence 1113666777777789999998899999999999999999988643331 11 124566777766654321
Q ss_pred -----CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhc-----------------cH-------HHHHHHHH
Q 021614 219 -----GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------GE-------KGVRRVLE 269 (310)
Q Consensus 219 -----~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~-----------------G~-------~~v~~~l~ 269 (310)
.++|||++|||+++.|+.|+|++|||+||+|++|.....+. |. -.+.+++.
T Consensus 250 ~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~~~~~eg~~~~~~~~g~~~~~~~ 329 (368)
T PRK08649 250 DETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPHPSLPRGTRIKVGTTGSLEQILF 329 (368)
T ss_pred hhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCCCcCCCceEEeCCCcCcHHHHhc
Confidence 15999999999999999999999999999999997643221 11 13778877
Q ss_pred ----------HHHHHHHHHHHHcCCCCHhhhcccceec
Q 021614 270 ----------MLREEFELAMALSGCRSLKEITRDHIVT 297 (310)
Q Consensus 270 ----------~l~~~l~~~m~~~G~~~i~~l~~~~~~~ 297 (310)
++..+|++.|.++|+.+|+||++-.++.
T Consensus 330 ~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 330 GPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred CcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 9999999999999999999999876653
No 34
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.90 E-value=1.1e-21 Score=183.61 Aligned_cols=246 Identities=20% Similarity=0.198 Sum_probs=175.7
Q ss_pred CcccCcceeeccccccccCCCHHHHHHHHHHHHcCC-eeEeCCCCC-CC-----HHHHHccCC--CceeEEEEecCChHH
Q 021614 7 GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWST-SS-----VEEVASTGP--GIRFFQLYVYKDRNV 77 (310)
Q Consensus 7 g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~-~~~~~~~~~-~~-----~e~i~~~~~--~~~~~ql~~~~d~~~ 77 (310)
+.....|+++|||+|. + |.++++.|+++|. .+++++|-+ .. ........+ .+..+||+ ++|++.
T Consensus 6 ~~~~~~~~~lAPM~g~--t----d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~ 78 (333)
T PRK11815 6 SKLPSRRFSVAPMMDW--T----DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPAD 78 (333)
T ss_pred ccCCCCCEEEeCCCCC--c----CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHH
Confidence 3455789999999886 3 7899999999997 788888732 11 122222222 37889999 899999
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHH
Q 021614 78 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 157 (310)
Q Consensus 78 ~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 157 (310)
+.+.+++++++|++.|+||++||....+. .+.+..+. .++++..+++
T Consensus 79 ~~~aA~~~~~~g~d~IdlN~gCP~~~v~~-------------------------------~~~Gs~L~--~~p~~~~eiv 125 (333)
T PRK11815 79 LAEAAKLAEDWGYDEINLNVGCPSDRVQN-------------------------------GRFGACLM--AEPELVADCV 125 (333)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCHHHccC-------------------------------CCeeeHHh--cCHHHHHHHH
Confidence 99999999999999999999999862110 01111222 3778888999
Q ss_pred HHHHhhCCCCEEEEecCC----------HHHHHHHHHcCCcEEEEecCCC-CCCC-------CCcchHHHHHHHHHHhcC
Q 021614 158 KWLQTITKLPILVKGVLT----------AEDARIAVQAGAAGIIVSNHGA-RQLD-------YVPATIMALEEVVKATQG 219 (310)
Q Consensus 158 ~~ir~~~~~pv~vK~~~~----------~~~a~~~~~aGad~I~v~~~gg-~~~~-------~~~~~~~~l~~i~~~~~~ 219 (310)
+.+++.+++||.+|+... .+.++.+.++|+|+|.++++.+ .+.. ..+..++.+.++++.+ .
T Consensus 126 ~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~ 204 (333)
T PRK11815 126 KAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF-P 204 (333)
T ss_pred HHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC-C
Confidence 999999999999998531 2346888899999999986432 1111 1234577788777653 2
Q ss_pred CceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHh-----h---hccH----HHHHHHHHHHHHHHHHHHHHcCCCCH
Q 021614 220 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL-----A---AEGE----KGVRRVLEMLREEFELAMALSGCRSL 287 (310)
Q Consensus 220 ~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~-----~---~~G~----~~v~~~l~~l~~~l~~~m~~~G~~~i 287 (310)
++|||++|||++++|+.++++ |||+||+||+++... . ..|. ....+++..+.++++..... |. .+
T Consensus 205 ~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 281 (333)
T PRK11815 205 HLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-GG-RL 281 (333)
T ss_pred CCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-hH
Confidence 699999999999999999987 799999999776421 1 1122 23456677777777776663 43 47
Q ss_pred hhhccccee
Q 021614 288 KEITRDHIV 296 (310)
Q Consensus 288 ~~l~~~~~~ 296 (310)
..++++..+
T Consensus 282 ~~~rk~~~~ 290 (333)
T PRK11815 282 NHITRHMLG 290 (333)
T ss_pred HHHHHHHHH
Confidence 777766433
No 35
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.89 E-value=1.2e-21 Score=182.70 Aligned_cols=239 Identities=24% Similarity=0.313 Sum_probs=171.7
Q ss_pred CceeecC-cccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHc---cCCCceeEEEEecCChH
Q 021614 1 MNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS---TGPGIRFFQLYVYKDRN 76 (310)
Q Consensus 1 ~~t~l~g-~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~---~~~~~~~~ql~~~~d~~ 76 (310)
++|.|.+ ..++.||+.|||.+. + +..|+.+..++|...++... .+++++.+ ..+....+..-.+.+++
T Consensus 23 l~t~l~~~~~l~~Piv~apM~~v--t----~~~ma~ava~~GglGvi~~~--~~~~~~~~~i~~vk~~l~v~~~~~~~~~ 94 (325)
T cd00381 23 LSTKLTKNITLNIPLVSAPMDTV--T----ESEMAIAMARLGGIGVIHRN--MSIEEQAEEVRKVKGRLLVGAAVGTRED 94 (325)
T ss_pred eeEEecCccccCCCEEecCCCcC--C----cHHHHHHHHHCCCEEEEeCC--CCHHHHHHHHHHhccCceEEEecCCChh
Confidence 4677877 788999999999765 3 56899988899876666532 34444331 11222233222233333
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHH
Q 021614 77 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 156 (310)
Q Consensus 77 ~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (310)
..+.++.+.++|++.|++++.. .+++...+.
T Consensus 95 -~~~~~~~l~eagv~~I~vd~~~------------------------------------------------G~~~~~~~~ 125 (325)
T cd00381 95 -DKERAEALVEAGVDVIVIDSAH------------------------------------------------GHSVYVIEM 125 (325)
T ss_pred -HHHHHHHHHhcCCCEEEEECCC------------------------------------------------CCcHHHHHH
Confidence 3445666677899998875421 011122467
Q ss_pred HHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCC------CCCCCcchHHHHHHHHHHhc-CCceEEEecC
Q 021614 157 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQ-GRIPVFLDGG 228 (310)
Q Consensus 157 i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~------~~~~~~~~~~~l~~i~~~~~-~~ipvia~GG 228 (310)
++++++.. ++||++..+.+.+.++.+.++|+|+|+++..+|. ....+.+.+..+.++.+... .++|||++||
T Consensus 126 i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GG 205 (325)
T cd00381 126 IKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGG 205 (325)
T ss_pred HHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCC
Confidence 99999876 4899988889999999999999999998543321 11245678888888776553 2699999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEcHHHHHHhhhc------------------------------------------c------
Q 021614 229 VRRGTDVFKALALGASGIFIGRPVVYSLAAE------------------------------------------G------ 260 (310)
Q Consensus 229 I~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~------------------------------------------G------ 260 (310)
|+++.|+.|++++|||+||+||.|.....+. |
T Consensus 206 I~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~eg~~~~v~ 285 (325)
T cd00381 206 IRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFGEEAKKLVPEGVEGIVP 285 (325)
T ss_pred CCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccccccccccccccCCceEEEEe
Confidence 9999999999999999999999996432110 1
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCCCHhhhccccee
Q 021614 261 -EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 296 (310)
Q Consensus 261 -~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~~~ 296 (310)
.-.+.+.+.++..+|++.|.++|+.+|+||++....
T Consensus 286 ~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~~ 322 (325)
T cd00381 286 YKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARF 322 (325)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCeE
Confidence 013788999999999999999999999999988644
No 36
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.89 E-value=1.3e-21 Score=180.89 Aligned_cols=213 Identities=23% Similarity=0.301 Sum_probs=150.7
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeC-CCCCC---------------------------
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS--------------------------- 52 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~-~~~~~--------------------------- 52 (310)
++|+++|++|++||++|+-..+. +....+.+.+.|..+.+. |.+..
T Consensus 2 l~~~~~Gl~l~nPi~~aag~~~~------~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n~ 75 (299)
T cd02940 2 LSVTFCGIKFPNPFGLASAPPTT------SYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNNI 75 (299)
T ss_pred CceEECCEEcCCCCEeCCcCCCC------CHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccCC
Confidence 58999999999999999954321 223333333446544432 22111
Q ss_pred ------CHHH----HH---ccCC-CceeEEEEecC-ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCC
Q 021614 53 ------SVEE----VA---STGP-GIRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 117 (310)
Q Consensus 53 ------~~e~----i~---~~~~-~~~~~ql~~~~-d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~ 117 (310)
.++. +. +..+ .+.+.|++ +. +++.+.+.++++++.|+++|++|++||....+
T Consensus 76 e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~-G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~------------ 142 (299)
T cd02940 76 ELISEKPLEYWLKEIRELKKDFPDKILIASIM-CEYNKEDWTELAKLVEEAGADALELNFSCPHGMPE------------ 142 (299)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCCeEEEEec-CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCC------------
Confidence 0111 11 1112 35678998 55 89999999999988999999999999995100
Q ss_pred cccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCH----HHHHHHHHcCCcEEEEe
Q 021614 118 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVS 193 (310)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~----~~a~~~~~aGad~I~v~ 193 (310)
.+.+..+. .+++...++++++++.+++||++|+..+. +.++.+.++|+|+|+++
T Consensus 143 --------------------~~~G~~l~--~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 143 --------------------RGMGAAVG--QDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred --------------------CCCchhhc--cCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 00011121 25666778899999999999999998543 56888999999999988
Q ss_pred cCCCC---------------------CCCCCc----chHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 021614 194 NHGAR---------------------QLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 248 (310)
Q Consensus 194 ~~gg~---------------------~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~i 248 (310)
|+... +..+++ .+++.+.++++.+..++|||++|||++++|+.+++.+|||+||+
T Consensus 201 Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 201 NTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred cccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 74311 111222 34788888888775579999999999999999999999999999
Q ss_pred cHHHHH
Q 021614 249 GRPVVY 254 (310)
Q Consensus 249 g~~~l~ 254 (310)
||++++
T Consensus 281 ~ta~~~ 286 (299)
T cd02940 281 CTAVMN 286 (299)
T ss_pred ceeecc
Confidence 999876
No 37
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.89 E-value=3.1e-21 Score=176.46 Aligned_cols=178 Identities=26% Similarity=0.394 Sum_probs=141.0
Q ss_pred cCChHHHHHHHHHHHHcC-CcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCC
Q 021614 72 YKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 150 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G-~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (310)
....+.+.+.+..+++.+ ++.+++|+.||.. | + ...+. .++
T Consensus 105 ~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt-------------~----------------------g-~~~l~--~~~ 146 (310)
T COG0167 105 GPSEEAWADYARLLEEAGDADAIELNISCPNT-------------P----------------------G-GRALG--QDP 146 (310)
T ss_pred CCcHHHHHHHHHHHHhcCCCCEEEEEccCCCC-------------C----------------------C-hhhhc--cCH
Confidence 345677888888888888 8999999999884 1 0 01111 244
Q ss_pred cccHHHHHHHHhhCCCCEEEEecCCHH----HHHHHHHcCCcEEEEecCCCCC--C------------CC---C----cc
Q 021614 151 SLSWKDVKWLQTITKLPILVKGVLTAE----DARIAVQAGAAGIIVSNHGARQ--L------------DY---V----PA 205 (310)
Q Consensus 151 ~~~~~~i~~ir~~~~~pv~vK~~~~~~----~a~~~~~aGad~I~v~~~gg~~--~------------~~---~----~~ 205 (310)
+...+.++++++..++||++|+..+.+ .|+.+.++|+|+|++.|+.... . .+ + +.
T Consensus 147 e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~ 226 (310)
T COG0167 147 ELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPI 226 (310)
T ss_pred HHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHH
Confidence 555677889999999999999987643 4788999999999999954211 0 11 2 34
Q ss_pred hHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCC
Q 021614 206 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 206 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~ 285 (310)
....++++++.+..++|||++|||.|++|+++.+.+||++|++|+++++ .|. .+++.+.++|.++|...|++
T Consensus 227 al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp----~i~~~I~~~l~~~l~~~g~~ 298 (310)
T COG0167 227 ALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIY----KGP----GIVKEIIKGLARWLEEKGFE 298 (310)
T ss_pred HHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeee----eCc----hHHHHHHHHHHHHHHHcCCC
Confidence 5677788888876789999999999999999999999999999999987 466 36789999999999999999
Q ss_pred CHhhhcccce
Q 021614 286 SLKEITRDHI 295 (310)
Q Consensus 286 ~i~~l~~~~~ 295 (310)
|++|+++...
T Consensus 299 si~d~iG~~~ 308 (310)
T COG0167 299 SIQDIIGSAL 308 (310)
T ss_pred CHHHHhchhc
Confidence 9999998653
No 38
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.89 E-value=3.8e-21 Score=185.65 Aligned_cols=188 Identities=20% Similarity=0.270 Sum_probs=146.2
Q ss_pred ceeEEEEecC-ChHHHHHHHHHHHHcCCcEEEEeeCCCCC-CcchHHhhhccCCCCcccccccccccccccccccchhhH
Q 021614 64 IRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 141 (310)
Q Consensus 64 ~~~~ql~~~~-d~~~~~~~i~~~~~~G~~~i~i~~~~p~~-~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (310)
+.++|+. +. +++.+.+.++.+++.|+++|++|++||.. ..| +.+
T Consensus 101 p~i~si~-g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~---------------------------------~~g 146 (420)
T PRK08318 101 ALIASIM-VECNEEEWKEIAPLVEETGADGIELNFGCPHGMSER---------------------------------GMG 146 (420)
T ss_pred eEEEEec-cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcccc---------------------------------CCc
Confidence 4578998 55 78989999999999999999999999983 110 001
Q ss_pred HHhhhccCCcccHHHHHHHHhhCCCCEEEEecCC----HHHHHHHHHcCCcEEEEecCCCC-------------------
Q 021614 142 AYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHGAR------------------- 198 (310)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~----~~~a~~~~~aGad~I~v~~~gg~------------------- 198 (310)
..+. .+++...++++++++.+++||++|+..+ .+.++.+.++|+|+|++.|+...
T Consensus 147 ~~~~--~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~ 224 (420)
T PRK08318 147 SAVG--QVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKS 224 (420)
T ss_pred cccc--CCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCC
Confidence 1111 2566667889999999999999999854 35678899999999997664210
Q ss_pred --CCCCCcc----hHHHHHHHHHHhc-CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHH
Q 021614 199 --QLDYVPA----TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEML 271 (310)
Q Consensus 199 --~~~~~~~----~~~~l~~i~~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l 271 (310)
+..+|++ .++.+.++++.+. .++|||++|||.|++|+.++|.+|||+||+||++++ +|. .++..+
T Consensus 225 ~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~----~gp----~ii~~I 296 (420)
T PRK08318 225 SHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ----YGF----RIVEDM 296 (420)
T ss_pred CcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc----CCc----hhHHHH
Confidence 1112333 4777888877653 279999999999999999999999999999999886 355 367789
Q ss_pred HHHHHHHHHHcCCCCHhhhcccce
Q 021614 272 REEFELAMALSGCRSLKEITRDHI 295 (310)
Q Consensus 272 ~~~l~~~m~~~G~~~i~~l~~~~~ 295 (310)
.++|+.+|...|..++.++.+...
T Consensus 297 ~~~L~~~l~~~g~~si~e~iG~~~ 320 (420)
T PRK08318 297 ISGLSHYMDEKGFASLEDMVGLAV 320 (420)
T ss_pred HHHHHHHHHHcCcchHHHHhcccc
Confidence 999999999999999999987644
No 39
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.88 E-value=3.4e-21 Score=181.04 Aligned_cols=268 Identities=22% Similarity=0.270 Sum_probs=164.5
Q ss_pred eeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCC----CCCHH----HHHccCCC------cee-E
Q 021614 3 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS----TSSVE----EVASTGPG------IRF-F 67 (310)
Q Consensus 3 t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~----~~~~e----~i~~~~~~------~~~-~ 67 (310)
.++.+.+++.||+.|||++. + |.+|+.++.++|....++... ....+ +|...... ... -
T Consensus 36 ~~i~~~~l~~PivlAPMagV--t----d~~fr~~~~~~Galgvvsaegl~~~~~~~~~~~~QI~g~~~~~~~a~aa~~~~ 109 (369)
T TIGR01304 36 WQIDAYRFELPFIAHPMDAL--V----SPEFAIELGELGGLGVLNLEGLWGRHEDPDPAIAKIAEAYEEGDQAAATRLLQ 109 (369)
T ss_pred eEEcceecCCceeecCCCcc--c----CHHHHHHHHHcCCcccccchHHHhcCCCHHHHHHHHhhcCCChHHHHHHHHHH
Confidence 34667788999999999875 4 679999999999965665321 11111 11111000 000 1
Q ss_pred EEEe-cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhh
Q 021614 68 QLYV-YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 146 (310)
Q Consensus 68 ql~~-~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (310)
++|. +.+++++.++++.+++.+.. +-+.++ |.......+. +.+...+.+.-....-.+++.++
T Consensus 110 e~~~~~~~p~l~~~ii~~vr~a~Vt-vkiRl~-~~~~~e~a~~--------------l~eAGad~I~ihgrt~~q~~~sg 173 (369)
T TIGR01304 110 ELHAAPLKPELLGERIAEVRDSGVI-TAVRVS-PQNAREIAPI--------------VVKAGADLLVIQGTLVSAEHVST 173 (369)
T ss_pred HcCCCccChHHHHHHHHHHHhcceE-EEEecC-CcCHHHHHHH--------------HHHCCCCEEEEeccchhhhccCC
Confidence 1221 13566666666666666522 222221 2110000000 00000000000000001112221
Q ss_pred ccCCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCC----CCCCcchHHHHHHHHHHh-----
Q 021614 147 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ----LDYVPATIMALEEVVKAT----- 217 (310)
Q Consensus 147 ~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~----~~~~~~~~~~l~~i~~~~----- 217 (310)
.-.|+.+.++++..++||+++.+.+.++++.+.++|||+|.++.+++.. ...+.+....+.++.++.
T Consensus 174 ----~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~ 249 (369)
T TIGR01304 174 ----SGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLD 249 (369)
T ss_pred ----CCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 1237788888888999999988999999999999999999854333221 112355666666654332
Q ss_pred --c-CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccH-----------------------H----HHHHH
Q 021614 218 --Q-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE-----------------------K----GVRRV 267 (310)
Q Consensus 218 --~-~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~-----------------------~----~v~~~ 267 (310)
. ..+|||++|||+++.|+.|+|++|||+||+|++|+....+.|. . .++++
T Consensus 250 e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (369)
T TIGR01304 250 ETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAHPRLPRGVVTESGTVGEAPTLEEI 329 (369)
T ss_pred hcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcCccCCccccccccccCCCCcHHHH
Confidence 1 1499999999999999999999999999999999875432210 1 25666
Q ss_pred H----------HHHHHHHHHHHHHcCCCCHhhhccccee
Q 021614 268 L----------EMLREEFELAMALSGCRSLKEITRDHIV 296 (310)
Q Consensus 268 l----------~~l~~~l~~~m~~~G~~~i~~l~~~~~~ 296 (310)
+ ..+...|+..|..+|++++++|++-.+.
T Consensus 330 ~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 330 LHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred eeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 5 4788999999999999999999987654
No 40
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.87 E-value=1.9e-20 Score=173.63 Aligned_cols=240 Identities=19% Similarity=0.200 Sum_probs=167.7
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeC-CCCC--------------------------CC
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------SS 53 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~-~~~~--------------------------~~ 53 (310)
++|+++|.+|++||++|+-..+. +....+.+.+.|..+++. |.+. ..
T Consensus 2 L~~~~~Gl~l~NPv~~AsG~~~~------~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~g 75 (310)
T PRK02506 2 TSTQIAGFKFDNCLMNAAGVYCM------TKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNLG 75 (310)
T ss_pred CceEECCEECCCCCEeCCCCCCC------CHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCcC
Confidence 58999999999999999976531 223344477777665543 3221 11
Q ss_pred H----HHHHc---cCC-CceeEEEEecCChHHHHHHHHHHHHcC-CcEEEEeeCCCCCCcchHHhhhccCCCCccccccc
Q 021614 54 V----EEVAS---TGP-GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 124 (310)
Q Consensus 54 ~----e~i~~---~~~-~~~~~ql~~~~d~~~~~~~i~~~~~~G-~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~ 124 (310)
+ +++.+ ..+ .+.+.++. +.+.+.+.+.+++++++| +++|++|+.||.... .+
T Consensus 76 ~~~~~~~i~~~~~~~~~~pvI~Si~-G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~-~~----------------- 136 (310)
T PRK02506 76 FDYYLDYVLELQKKGPNKPHFLSVV-GLSPEETHTILKKIQASDFNGLVELNLSCPNVPG-KP----------------- 136 (310)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEE-eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCC-cc-----------------
Confidence 1 22221 111 35566775 677888889999998888 899999999997410 00
Q ss_pred ccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCC---HHHHHHHH---HcCCcEEEEecCC--
Q 021614 125 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT---AEDARIAV---QAGAAGIIVSNHG-- 196 (310)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~---~~~a~~~~---~aGad~I~v~~~g-- 196 (310)
.+ +.|++...+.++++++.+++||++|+... .+.++.+. +.|+++|...|+-
T Consensus 137 ------------------~~--g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~ 196 (310)
T PRK02506 137 ------------------QI--AYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGN 196 (310)
T ss_pred ------------------cc--ccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCC
Confidence 00 11344456889999999999999999853 23343333 5567777666531
Q ss_pred C--------CC-C-----CC---C----cchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 197 A--------RQ-L-----DY---V----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 197 g--------~~-~-----~~---~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
+ +. . .+ + +-....+.++++.+..++|||++|||.|++|+++.+.+||++||+++++++
T Consensus 197 ~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~- 275 (310)
T PRK02506 197 GLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK- 275 (310)
T ss_pred ceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH-
Confidence 1 00 0 01 1 234556677777665579999999999999999999999999999999987
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021614 256 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 293 (310)
Q Consensus 256 ~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (310)
+|. .++..+.+||+++|...|+++++|+++.
T Consensus 276 ---~gp----~~~~~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 276 ---EGP----AVFERLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred ---hCh----HHHHHHHHHHHHHHHHhCCCCHHHHhCh
Confidence 355 3678899999999999999999999874
No 41
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.86 E-value=7.9e-20 Score=169.93 Aligned_cols=232 Identities=24% Similarity=0.316 Sum_probs=159.6
Q ss_pred cCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHH-------HHcc-------CCCceeEEEEe
Q 021614 6 LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-------VAST-------GPGIRFFQLYV 71 (310)
Q Consensus 6 ~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~-------i~~~-------~~~~~~~ql~~ 71 (310)
-+.+++.||+-|||-.. + +..+|.+..+.|...++.-. .++|+ +.+. ..+...+-.-.
T Consensus 32 ~~~~l~iPivsa~MDtV--t----e~~mAiama~~Gglgvih~~--~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aav 103 (352)
T PF00478_consen 32 RNITLKIPIVSAPMDTV--T----ESEMAIAMARLGGLGVIHRN--MSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAV 103 (352)
T ss_dssp TSEEESSSEEE-SSTTT--S----SHHHHHHHHHTTSEEEEESS--SCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEE
T ss_pred CCEeecCceEecCcccc--c----hHHHHHHHHHhcCCceecCC--CCHHHHHHHHhhhccccccccccccccceEEEEe
Confidence 47789999999999432 3 66999999999887777653 33332 2111 11222222222
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
+...+. .+.++.+.++|++.|.|..- . ++.+.
T Consensus 104 g~~~~~-~er~~~L~~agvD~ivID~a--~-------------------------------------g~s~~-------- 135 (352)
T PF00478_consen 104 GTRDDD-FERAEALVEAGVDVIVIDSA--H-------------------------------------GHSEH-------- 135 (352)
T ss_dssp ESSTCH-HHHHHHHHHTT-SEEEEE-S--S-------------------------------------TTSHH--------
T ss_pred cCCHHH-HHHHHHHHHcCCCEEEcccc--C-------------------------------------ccHHH--------
Confidence 222222 23345556789999877421 1 11222
Q ss_pred ccHHHHHHHHhhCC-CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCC------CCCCcchHHHHHHHHHHhc-CCceE
Q 021614 152 LSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GRIPV 223 (310)
Q Consensus 152 ~~~~~i~~ir~~~~-~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~-~~ipv 223 (310)
..+.++++|+.++ +||++..+.|.+.++.++++|||+|.|.-.+|.- .-.+.|.+.++.++++... ..+||
T Consensus 136 -~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~i 214 (352)
T PF00478_consen 136 -VIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPI 214 (352)
T ss_dssp -HHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEE
T ss_pred -HHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCce
Confidence 2467999999885 9999999999999999999999999997654421 0125678888888876653 37999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEcHHHHH--------------------Hhhh------------------------c
Q 021614 224 FLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA------------------------E 259 (310)
Q Consensus 224 ia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~--------------------~~~~------------------------~ 259 (310)
|++|||++..|+.|||++|||+||+|+.|-- +++. +
T Consensus 215 IADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry~~~~~~~~v~e 294 (352)
T PF00478_consen 215 IADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRYFQAEDKKFVPE 294 (352)
T ss_dssp EEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTCTSSTSSTSSSS
T ss_pred eecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhcccccccccccc
Confidence 9999999999999999999999999998721 1100 1
Q ss_pred cH-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021614 260 GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDH 294 (310)
Q Consensus 260 G~-------~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (310)
|. -.+.+++.++..+|++.|.++|+.+|.||+++.
T Consensus 295 Gve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 295 GVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp BEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred ceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 21 138899999999999999999999999999885
No 42
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.85 E-value=2e-19 Score=170.19 Aligned_cols=141 Identities=24% Similarity=0.339 Sum_probs=112.8
Q ss_pred cHHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCC-----CCCC-CCcchHHHHHHHHHHhc-CCceEE
Q 021614 153 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQLD-YVPATIMALEEVVKATQ-GRIPVF 224 (310)
Q Consensus 153 ~~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg-----~~~~-~~~~~~~~l~~i~~~~~-~~ipvi 224 (310)
.++.++++|+.+ +.+|+++.+.|.++++.+.++|+|+|.++...| +..+ .+.+.+..+.++.+.+. .++|||
T Consensus 181 ~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVI 260 (404)
T PRK06843 181 IIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICII 260 (404)
T ss_pred HHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEE
Confidence 457899999987 799999999999999999999999999854333 2222 24567777766655442 379999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEcHHHHHH--------------------hhh-------------------------c
Q 021614 225 LDGGVRRGTDVFKALALGASGIFIGRPVVYS--------------------LAA-------------------------E 259 (310)
Q Consensus 225 a~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~--------------------~~~-------------------------~ 259 (310)
++|||+++.|+.|+|++||++||+|++|.-. ++. +
T Consensus 261 AdGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~e 340 (404)
T PRK06843 261 ADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPE 340 (404)
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCC
Confidence 9999999999999999999999999988431 100 0
Q ss_pred cHH-------HHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021614 260 GEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 293 (310)
Q Consensus 260 G~~-------~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (310)
|.+ .+.+++.++..+|++.|.++|+.+|.+|+++
T Consensus 341 Gveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~~ 381 (404)
T PRK06843 341 GIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKIN 381 (404)
T ss_pred ccEEEecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHhc
Confidence 110 1789999999999999999999999999965
No 43
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.85 E-value=2.4e-19 Score=165.18 Aligned_cols=223 Identities=17% Similarity=0.133 Sum_probs=152.8
Q ss_pred eeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeC-CCCC--------------------------CC--
Q 021614 3 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------SS-- 53 (310)
Q Consensus 3 t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~-~~~~--------------------------~~-- 53 (310)
|+++|.+|++||++|+-..+. +....+.+.+.|..+++. |... ..
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~~------~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWCT------TLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCCCCC------CHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 578999999999999976431 334455555677766543 3210 11
Q ss_pred --HHHHHcc------CCCceeEEEEecCChHHHHHHHHHHHHc---CCcEEEEeeCCCCCCcchHHhhhccCCCCccccc
Q 021614 54 --VEEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 122 (310)
Q Consensus 54 --~e~i~~~------~~~~~~~ql~~~~d~~~~~~~i~~~~~~---G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~ 122 (310)
++++.+. ...+.++|+. +. ++.+.+.++++.+. |+++|++|+.||.....
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~-g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~----------------- 135 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVT-GS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK----------------- 135 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECC-CC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCc-----------------
Confidence 1223221 1236778997 45 78888888888775 69999999999984100
Q ss_pred ccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCC--H----HHHHHHHHc--CCcEEEEec
Q 021614 123 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT--A----EDARIAVQA--GAAGIIVSN 194 (310)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~--~----~~a~~~~~a--Gad~I~v~~ 194 (310)
.. + ..+++...++++++++.+++||++|+... . +.++.+.++ |+|+|++.|
T Consensus 136 ------------------~~-~--~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 136 ------------------PP-P--AYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred ------------------cc-c--cCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEc
Confidence 00 0 12455667889999999999999999843 2 235556677 999999876
Q ss_pred CCC---------CC-------CCCCcc-------hHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHH
Q 021614 195 HGA---------RQ-------LDYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 251 (310)
Q Consensus 195 ~gg---------~~-------~~~~~~-------~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~ 251 (310)
+.+ +. ..++.+ .+..+.++++.+..++|||++|||.+++|+.+++.+|||+||+||+
T Consensus 195 t~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta 274 (294)
T cd04741 195 TLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTA 274 (294)
T ss_pred cCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchh
Confidence 431 10 112221 3444566666664469999999999999999999999999999999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHH
Q 021614 252 VVYSLAAEGEKGVRRVLEMLREEFELAM 279 (310)
Q Consensus 252 ~l~~~~~~G~~~v~~~l~~l~~~l~~~m 279 (310)
+++ .|+ .++..+.++|+.+|
T Consensus 275 ~~~----~gp----~~~~~i~~~L~~~~ 294 (294)
T cd04741 275 LGK----EGP----KVFARIEKELEDIW 294 (294)
T ss_pred hhh----cCc----hHHHHHHHHHHhhC
Confidence 986 254 35667788887764
No 44
>PLN02826 dihydroorotate dehydrogenase
Probab=99.85 E-value=8.2e-19 Score=167.32 Aligned_cols=123 Identities=30% Similarity=0.466 Sum_probs=99.8
Q ss_pred CCCCEEEEec--CCHHH----HHHHHHcCCcEEEEecCCC-C----------CCCC---Cc----chHHHHHHHHHHhcC
Q 021614 164 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGA-R----------QLDY---VP----ATIMALEEVVKATQG 219 (310)
Q Consensus 164 ~~~pv~vK~~--~~~~~----a~~~~~aGad~I~v~~~gg-~----------~~~~---~~----~~~~~l~~i~~~~~~ 219 (310)
.++||++|+. .+.++ ++.+.++|+|+|+++|+.- + +..+ |+ ...+.+.++++.+.+
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 4689999996 44333 7889999999999998531 1 0111 22 356677888877766
Q ss_pred CceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021614 220 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 294 (310)
Q Consensus 220 ~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (310)
++|||++|||.+++|+++.+.+||++|+++|++++ +|+ .++..++++|.++|...|+.+++|+++.+
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp----~~i~~I~~eL~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGP----ALIPRIKAELAACLERDGFKSIQEAVGAD 407 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCH----HHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 89999999999999999999999999999999987 466 36788999999999999999999998754
No 45
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.85 E-value=2.5e-19 Score=168.50 Aligned_cols=228 Identities=16% Similarity=0.159 Sum_probs=154.0
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeC-CCCCC---------------------------
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS--------------------------- 52 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~-~~~~~--------------------------- 52 (310)
++|+++|.+|.+||++|+- .. . +....+.+.+.|..+.+. |.+..
T Consensus 49 L~~~~~Gl~l~nPi~~AsG-~~----~--~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n 121 (344)
T PRK05286 49 LPVTVMGLTFPNPVGLAAG-FD----K--NGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNN 121 (344)
T ss_pred CceEECCEECCCCCEECCC-CC----C--ChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCC
Confidence 5789999999999998773 21 2 334555577888766543 32210
Q ss_pred -C----HHHHHccCC-CceeEEEEecC------ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCccc
Q 021614 53 -S----VEEVASTGP-GIRFFQLYVYK------DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 120 (310)
Q Consensus 53 -~----~e~i~~~~~-~~~~~ql~~~~------d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~ 120 (310)
. ++++.+... -+.++++.... ..+.+.+.++++.+ ++++|++|+.||.....
T Consensus 122 ~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~--------------- 185 (344)
T PRK05286 122 DGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGL--------------- 185 (344)
T ss_pred HhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCc---------------
Confidence 0 122222111 24666775211 34555555555544 48888999888874100
Q ss_pred ccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCC-----CCEEEEecCC------HHHHHHHHHcCCcE
Q 021614 121 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-----LPILVKGVLT------AEDARIAVQAGAAG 189 (310)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~-----~pv~vK~~~~------~~~a~~~~~aGad~ 189 (310)
+ . ..+++...++++++|+.++ +||++|+... .+.++.+.++|+|+
T Consensus 186 -~--------------------~---~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadg 241 (344)
T PRK05286 186 -R--------------------D---LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDG 241 (344)
T ss_pred -c--------------------c---ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcE
Confidence 0 0 0133344578999999876 9999999843 24478889999999
Q ss_pred EEEecCCC-------------CCCCCCc----chHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHH
Q 021614 190 IIVSNHGA-------------RQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 190 I~v~~~gg-------------~~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
|+++|+.. ++..+++ ..++.+.++++.++.++|||++|||++++|+.+++.+|||+|++||++
T Consensus 242 i~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~ 321 (344)
T PRK05286 242 VIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGL 321 (344)
T ss_pred EEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHH
Confidence 99998531 0011122 245667777777655799999999999999999999999999999999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHHHHHHHHcC
Q 021614 253 VYSLAAEGEKGVRRVLEMLREEFELAMALSG 283 (310)
Q Consensus 253 l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G 283 (310)
++. |+ .++..++++|+.+|...|
T Consensus 322 ~~~----gP----~~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 322 IYE----GP----GLVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHh----Cc----hHHHHHHHHHHHHHHhcC
Confidence 862 45 367788999999998876
No 46
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.84 E-value=3.2e-19 Score=163.06 Aligned_cols=229 Identities=20% Similarity=0.207 Sum_probs=160.9
Q ss_pred cccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHH----ccCCC-ceeEEEEecCChHHHHHHH
Q 021614 8 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA----STGPG-IRFFQLYVYKDRNVVAQLV 82 (310)
Q Consensus 8 ~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~----~~~~~-~~~~ql~~~~d~~~~~~~i 82 (310)
..+..|++-|+|--. ++..+|.+..++|.-.++.-. .++|+.. ...+. ...+-+-.+-.++..+++
T Consensus 43 ~~~giPii~AnMdTV------~~~~mA~~la~~g~~~~iHk~--~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~- 113 (346)
T PRK05096 43 SWSGVPIIAANMDTV------GTFEMAKALASFDILTAVHKH--YSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKT- 113 (346)
T ss_pred cccCCceEecCCCcc------ccHHHHHHHHHCCCeEEEecC--CCHHHHHHHHHhccccccceEEEEecCCHHHHHHH-
Confidence 345699999999332 277999999999988887642 2344322 22211 111112223344444333
Q ss_pred HHHHH--cCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHH
Q 021614 83 RRAER--AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 160 (310)
Q Consensus 83 ~~~~~--~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 160 (310)
+.+.+ .|++.|.|.+- +++++ ...+.|+++
T Consensus 114 ~~L~~~~~g~D~iviD~A---------------------------------------hGhs~---------~~i~~ik~i 145 (346)
T PRK05096 114 KQILALSPALNFICIDVA---------------------------------------NGYSE---------HFVQFVAKA 145 (346)
T ss_pred HHHHhcCCCCCEEEEECC---------------------------------------CCcHH---------HHHHHHHHH
Confidence 33344 58888876321 12222 235789999
Q ss_pred HhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCC----CCC--CCcchHHHHHHHHHHhc-CCceEEEecCCCCH
Q 021614 161 QTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLD--YVPATIMALEEVVKATQ-GRIPVFLDGGVRRG 232 (310)
Q Consensus 161 r~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~----~~~--~~~~~~~~l~~i~~~~~-~~ipvia~GGI~~~ 232 (310)
|+.+ +.+|++..+.|.+.++.++++|||+|.|.-..|. +.- .+.|.+.++.++++... ..+|||++|||++.
T Consensus 146 k~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~s 225 (346)
T PRK05096 146 REAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVP 225 (346)
T ss_pred HHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccc
Confidence 9986 7999999999999999999999999998765442 111 24567888877766543 37999999999999
Q ss_pred HHHHHHHHcCCCEEEEcHHHH--------------------HHhhh-----------------ccH-------HHHHHHH
Q 021614 233 TDVFKALALGASGIFIGRPVV--------------------YSLAA-----------------EGE-------KGVRRVL 268 (310)
Q Consensus 233 ~dv~k~l~~GAd~V~ig~~~l--------------------~~~~~-----------------~G~-------~~v~~~l 268 (310)
.|+.|+|++|||+||+|+.|- ++++. +|. -.+.+++
T Consensus 226 GDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i 305 (346)
T PRK05096 226 GDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTA 305 (346)
T ss_pred cHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhhccCcccccccccCceEEeccCCcHHHHH
Confidence 999999999999999999872 11110 011 1288899
Q ss_pred HHHHHHHHHHHHHcCCCCHhhhccc
Q 021614 269 EMLREEFELAMALSGCRSLKEITRD 293 (310)
Q Consensus 269 ~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (310)
.++..+|++.|.++|..+|.||+++
T Consensus 306 ~~l~gGlrs~m~Y~Ga~~i~el~~~ 330 (346)
T PRK05096 306 RDILGGLRSACTYVGASRLKELTKR 330 (346)
T ss_pred HHHHHHHHHHHcccCcCcHHHHHhC
Confidence 9999999999999999999999766
No 47
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.84 E-value=7.1e-19 Score=164.66 Aligned_cols=251 Identities=25% Similarity=0.289 Sum_probs=149.0
Q ss_pred ccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChHHHHHHHHHHHHc
Q 021614 9 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERA 88 (310)
Q Consensus 9 ~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~~~~~~i~~~~~~ 88 (310)
+++.||++++|+++++ +++...+|++++...|+...-++.. .+.++.... ....++|+- ........+.+ .
T Consensus 63 ~l~~p~~is~MS~GaL-S~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~~-~~~~I~Q~~-sg~fGv~~~~l-----~ 133 (368)
T PF01645_consen 63 ELSIPFMISAMSYGAL-SEEAKEALAKGANMAGTASNTGEGG-ELPEERKAA-KDLRIKQIA-SGRFGVRPEYL-----K 133 (368)
T ss_dssp HHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB--TTSSEEEE--TT-TT--HHHH-----C
T ss_pred hheeeeecccCChhhc-CHHHHHHHHHHHHHhCceEecCCCC-CCHHHhccc-CCceEEEcC-CCCCCCCHHHh-----c
Confidence 3689999999999876 5788899999999999988777754 344433222 222377876 34444444444 3
Q ss_pred CCcEEEEeeCC---CCCCcchHHhhhccCCCC-cccccccccccccccccccchhhHHHhhhccCCcc-----cHHHHHH
Q 021614 89 GFKAIALTVDT---PRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-----SWKDVKW 159 (310)
Q Consensus 89 G~~~i~i~~~~---p~~~~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~ 159 (310)
.++.|+|-++- |..|. .+|. ||+.. +.. ++ . .......++|...+++ ..+.|.+
T Consensus 134 ~a~~iEIKigQGAKpG~GG---------~Lp~~KV~~~-ia~-----~R-~-~~~g~~~iSP~~h~di~s~edl~~~I~~ 196 (368)
T PF01645_consen 134 QADMIEIKIGQGAKPGEGG---------HLPGEKVTEE-IAR-----IR-G-VPPGVDLISPPPHHDIYSIEDLAQLIEE 196 (368)
T ss_dssp C-SEEEEE---TTSTTT-----------EE-GGG--HH-HHH-----HH-T-S-TT--EE--SS-TT-SSHHHHHHHHHH
T ss_pred CCCeEEEEEecCccccCcc---------eechhhchHH-HHH-----Hh-C-CCCCCccccCCCCCCcCCHHHHHHHHHH
Confidence 56888887762 22111 0111 22210 000 00 0 0111233444433333 2455888
Q ss_pred HHhhC-CCCEEEEecCC--HHHH-HHHHHcCCcEEEEecCC-CCCC-------CCCcchHHHHHHHHHHh-----cCCce
Q 021614 160 LQTIT-KLPILVKGVLT--AEDA-RIAVQAGAAGIIVSNHG-ARQL-------DYVPATIMALEEVVKAT-----QGRIP 222 (310)
Q Consensus 160 ir~~~-~~pv~vK~~~~--~~~a-~~~~~aGad~I~v~~~g-g~~~-------~~~~~~~~~l~~i~~~~-----~~~ip 222 (310)
+|+.. .+||.+|++.. .++. ..+.++|+|+|++++++ |+.. +.+.|....+.++.+.+ ++++.
T Consensus 197 Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~ 276 (368)
T PF01645_consen 197 LRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVS 276 (368)
T ss_dssp HHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSE
T ss_pred HHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceE
Confidence 88887 89999999843 4443 44889999999999865 3321 24667777777776654 46799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhc-----------------------------cHHHHHHHHHHHHH
Q 021614 223 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLRE 273 (310)
Q Consensus 223 via~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~~l~~l~~ 273 (310)
++++||++++.|++|++++|||+|.+||++|+++.|. +.+.|.+++..+.+
T Consensus 277 Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~ 356 (368)
T PF01645_consen 277 LIASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAE 356 (368)
T ss_dssp EEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHH
T ss_pred EEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987652 35679999999999
Q ss_pred HHHHHHHHcCCC
Q 021614 274 EFELAMALSGCR 285 (310)
Q Consensus 274 ~l~~~m~~~G~~ 285 (310)
|++..|+.+|.+
T Consensus 357 el~~~~~a~G~~ 368 (368)
T PF01645_consen 357 ELREILAALGKR 368 (368)
T ss_dssp HHHHHHHHHT-S
T ss_pred HHHHHHHHhCCC
Confidence 999999999963
No 48
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.83 E-value=3.1e-19 Score=158.73 Aligned_cols=201 Identities=22% Similarity=0.282 Sum_probs=149.6
Q ss_pred ceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCC-CCH-----H--HHHccCC--CceeEEEEecCChHHHHHHH
Q 021614 13 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST-SSV-----E--EVASTGP--GIRFFQLYVYKDRNVVAQLV 82 (310)
Q Consensus 13 Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~-~~~-----e--~i~~~~~--~~~~~ql~~~~d~~~~~~~i 82 (310)
++++|||.+. + |.+++..++++|...+++++-. ..+ + ......+ .+..+|+. ..+++.+.+..
T Consensus 1 ~~~~aPm~~~--~----~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~-g~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGV--T----DLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLG-GSDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCC--c----CHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEc-CCCHHHHHHHH
Confidence 6899999775 3 7899999999999999888721 111 1 1111112 36788998 77899999999
Q ss_pred HHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHh
Q 021614 83 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 162 (310)
Q Consensus 83 ~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~ 162 (310)
+++.++|++.|+||++||....|. | + -| +.+. .++.+..+.++++++
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~-~---~-------------------------~G-~~l~---~~~~~~~eii~~v~~ 120 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTK-G---G-------------------------AG-AALL---KDPELVAEIVRAVRE 120 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhC-C---C-------------------------ee-ehhc---CCHHHHHHHHHHHHH
Confidence 999999999999999998752211 0 0 01 1111 256677889999999
Q ss_pred hCCCCEEEEecCCH-------HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHH
Q 021614 163 ITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 235 (310)
Q Consensus 163 ~~~~pv~vK~~~~~-------~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv 235 (310)
..+.|+.+|..... +.++.+.++|+|+|.+++....+...++..++.+.++++.. ++||+++|||++.+|+
T Consensus 121 ~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 121 AVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDA 198 (231)
T ss_pred hcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHH
Confidence 88899999986422 33677889999999997654322223345677777777654 7999999999999999
Q ss_pred HHHHHc-CCCEEEEcHHHHHH
Q 021614 236 FKALAL-GASGIFIGRPVVYS 255 (310)
Q Consensus 236 ~k~l~~-GAd~V~ig~~~l~~ 255 (310)
.+++.. |||+|++||+++..
T Consensus 199 ~~~l~~~gad~V~igr~~l~~ 219 (231)
T cd02801 199 LRCLEQTGVDGVMIGRGALGN 219 (231)
T ss_pred HHHHHhcCCCEEEEcHHhHhC
Confidence 999998 89999999998863
No 49
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.82 E-value=3e-19 Score=159.07 Aligned_cols=188 Identities=16% Similarity=0.139 Sum_probs=136.0
Q ss_pred ceeeccccccccCCCHHHHHHHH-HHHHcCCeeEeCCCC----------------------CCCHHHH----H--ccCCC
Q 021614 13 PIMIAPTAMQKMAHPEGEYATAR-AASAAGTIMTLSSWS----------------------TSSVEEV----A--STGPG 63 (310)
Q Consensus 13 Pi~iapm~~~~~~~~~~~~~la~-~a~~~g~~~~~~~~~----------------------~~~~e~i----~--~~~~~ 63 (310)
|+++|||+|. + |.+|++ .+..+|+. +++..+ +.+++.+ . +..+.
T Consensus 1 ~~~lApMag~--t----d~~f~~~~~~~~g~~-~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~ 73 (233)
T cd02911 1 PVALASMAGI--T----DGDFCRKRADHAGLV-FLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNV 73 (233)
T ss_pred CceeeecCCC--c----CHHHHHhhCccCCEE-EEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCC
Confidence 8999999886 4 679999 56666664 443322 1122211 1 11123
Q ss_pred ceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHH
Q 021614 64 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 143 (310)
Q Consensus 64 ~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (310)
+..+|++ +++++.+.++++.+++. ++.|++|++||+. ++.. .+.+..
T Consensus 74 p~~vqi~-g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~---------------~v~~----------------~g~G~~ 120 (233)
T cd02911 74 LVGVNVR-SSSLEPLLNAAALVAKN-AAILEINAHCRQP---------------EMVE----------------AGAGEA 120 (233)
T ss_pred eEEEEec-CCCHHHHHHHHHHHhhc-CCEEEEECCCCcH---------------HHhc----------------CCcchH
Confidence 6788999 78999999999988775 5999999999995 1111 122333
Q ss_pred hhhccCCcccHHHHHHHHhhCCCCEEEEecC-----CHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhc
Q 021614 144 VAGQIDRSLSWKDVKWLQTITKLPILVKGVL-----TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 218 (310)
Q Consensus 144 ~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~-----~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~ 218 (310)
+. .||+...++++.+++ .++||++|+.. +.+.++.+.++|+|+|++++. .+ +....++.+.+++
T Consensus 121 Ll--~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~--~~--g~~ad~~~I~~i~---- 189 (233)
T cd02911 121 LL--KDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAM--DP--GNHADLKKIRDIS---- 189 (233)
T ss_pred Hc--CCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcC--CC--CCCCcHHHHHHhc----
Confidence 33 377778899999988 69999999973 245678899999999877542 11 1234566666654
Q ss_pred CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHH
Q 021614 219 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 251 (310)
Q Consensus 219 ~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~ 251 (310)
.++|||++|||.+++|+.+++..|||+||+||+
T Consensus 190 ~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 190 TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 379999999999999999999999999999995
No 50
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.82 E-value=2.3e-18 Score=158.36 Aligned_cols=207 Identities=24% Similarity=0.298 Sum_probs=148.5
Q ss_pred eeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeC-CCCCC-----------------------------
Q 021614 3 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS----------------------------- 52 (310)
Q Consensus 3 t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~-~~~~~----------------------------- 52 (310)
|+|+|.+|++||++|+...+ . +..+.+.+.+.|..+.+. |.+..
T Consensus 1 ~~~~G~~~~nPv~~aag~~~--~----~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLL--K----TGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCC--C----CHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 68999999999999998663 1 446677777777665543 22110
Q ss_pred ------CH----HHHHcc----CCCceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCc
Q 021614 53 ------SV----EEVAST----GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 118 (310)
Q Consensus 53 ------~~----e~i~~~----~~~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~ 118 (310)
.+ +++.+. ...+..+|+. ..+++.+.+.++.+.+.|+++|++|++||......
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~------------ 141 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGGGR------------ 141 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEec-cCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCc------------
Confidence 01 122211 1236677987 67888999999999999999999999999852100
Q ss_pred ccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecC--C----HHHHHHHHHcCCcEEEE
Q 021614 119 LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL--T----AEDARIAVQAGAAGIIV 192 (310)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~--~----~~~a~~~~~aGad~I~v 192 (310)
. + ..+++...+.++++|+.+++||++|+.. + .+.++.+.++|+|+|++
T Consensus 142 ----------------------~--~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 142 ----------------------Q--L--GQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred ----------------------c--c--ccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 0 0 0134455688999999889999999873 3 34578899999999999
Q ss_pred ecCCC-CC------------CC---CC----cchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHH
Q 021614 193 SNHGA-RQ------------LD---YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 193 ~~~gg-~~------------~~---~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
+|+.. .. .. .+ +..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~ 275 (289)
T cd02810 196 INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATAL 275 (289)
T ss_pred EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHH
Confidence 87521 10 00 11 1235566777766544799999999999999999999999999999999
Q ss_pred HH
Q 021614 253 VY 254 (310)
Q Consensus 253 l~ 254 (310)
+.
T Consensus 276 ~~ 277 (289)
T cd02810 276 MW 277 (289)
T ss_pred Hh
Confidence 86
No 51
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.1e-18 Score=159.80 Aligned_cols=208 Identities=22% Similarity=0.262 Sum_probs=158.4
Q ss_pred ecCcccCcce-eeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCC-CCH---HHHH----ccCC--CceeEEEEecC
Q 021614 5 VLGFKISMPI-MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST-SSV---EEVA----STGP--GIRFFQLYVYK 73 (310)
Q Consensus 5 l~g~~~~~Pi-~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~-~~~---e~i~----~~~~--~~~~~ql~~~~ 73 (310)
+|-.+...|. ++|||-.. + +.++++.++++|...+++.|-. .++ +.-+ ...+ .|.++|+. ++
T Consensus 11 ~f~~~~~~~~ri~APMvd~----S--~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~-~n 83 (358)
T KOG2335|consen 11 IFWSKQGRPKRIVAPMVDY----S--ELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFG-GN 83 (358)
T ss_pred hhhhhcCCcccccCCcccc----c--HHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEc-CC
Confidence 4444445554 49999654 2 8899999999999999988731 111 0100 1122 38899988 89
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCccc
Q 021614 74 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 153 (310)
Q Consensus 74 d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (310)
|++.+.++++.+...+ ++|++|+|||+.-. .|.+| +.+++ .++++.
T Consensus 84 dp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a----~~g~y---------------------------Ga~L~--~~~eLv 129 (358)
T KOG2335|consen 84 DPENLLKAARLVQPYC-DGIDLNCGCPQKVA----KRGGY---------------------------GAFLM--DNPELV 129 (358)
T ss_pred CHHHHHHHHHHhhhhc-CcccccCCCCHHHH----hcCCc---------------------------cceec--cCHHHH
Confidence 9999999999888887 99999999997411 11111 22332 367778
Q ss_pred HHHHHHHHhhCCCCEEEEecC------CHHHHHHHHHcCCcEEEEecCCCCCC--CCCcchHHHHHHHHHHhcCCceEEE
Q 021614 154 WKDVKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFL 225 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~~------~~~~a~~~~~aGad~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia 225 (310)
-++++.+++..+.||.+|++. |.+.++.+.++|++.+.|+++...+. ..++..|+.+..+++.+++ +||++
T Consensus 130 ~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipvia 208 (358)
T KOG2335|consen 130 GEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIA 208 (358)
T ss_pred HHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEe
Confidence 899999999999999999973 46779999999999999988654332 2467889999999988854 99999
Q ss_pred ecCCCCHHHHHHHHH-cCCCEEEEcHHHHH
Q 021614 226 DGGVRRGTDVFKALA-LGASGIFIGRPVVY 254 (310)
Q Consensus 226 ~GGI~~~~dv~k~l~-~GAd~V~ig~~~l~ 254 (310)
+|+|.+..|+..++. .|||+||.|+..+.
T Consensus 209 NGnI~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 209 NGNILSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred eCCcCcHHHHHHHHHHhCCceEEecchhhc
Confidence 999999999999999 89999999996554
No 52
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.79 E-value=9.5e-18 Score=156.86 Aligned_cols=206 Identities=19% Similarity=0.198 Sum_probs=136.6
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeC-CCCCC---------------------------
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS--------------------------- 52 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~-~~~~~--------------------------- 52 (310)
++|+++|.+|++||++|+-.. . +....+.+.+.|..+.+. |.+..
T Consensus 39 L~~~~~Gl~l~nPi~~AsG~~-----~--~~~~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n 111 (327)
T cd04738 39 LEVEVFGLTFPNPVGLAAGFD-----K--NAEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNN 111 (327)
T ss_pred cceEECCEECCCCCEeCcCCC-----C--CHHHHHHHHHCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCC
Confidence 589999999999999877421 2 223344444777665443 32210
Q ss_pred -C----HHHHHccC--CCceeEEEEecCC-------hHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCc
Q 021614 53 -S----VEEVASTG--PGIRFFQLYVYKD-------RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 118 (310)
Q Consensus 53 -~----~e~i~~~~--~~~~~~ql~~~~d-------~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~ 118 (310)
. ++++.+.. ..+.++|+. +.+ .+.+.+.++++.. .+++|++|+.||......
T Consensus 112 ~g~~~~~~~l~~~~~~~~plivsi~-g~~~~~~~~~~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~------------ 177 (327)
T cd04738 112 DGADAVAKRLKKRRPRGGPLGVNIG-KNKDTPLEDAVEDYVIGVRKLGP-YADYLVVNVSSPNTPGLR------------ 177 (327)
T ss_pred ccHHHHHHHHHHhccCCCeEEEEEe-CCCCCcccccHHHHHHHHHHHHh-hCCEEEEECCCCCCCccc------------
Confidence 0 12233221 236678886 333 2444444454433 389999999998741000
Q ss_pred ccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCC-----CCEEEEecC--C----HHHHHHHHHcCC
Q 021614 119 LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-----LPILVKGVL--T----AEDARIAVQAGA 187 (310)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~-----~pv~vK~~~--~----~~~a~~~~~aGa 187 (310)
. ..+++...++++++|+.++ +||++|+.. + .+.++.+.++|+
T Consensus 178 ------------------------~---~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGa 230 (327)
T cd04738 178 ------------------------D---LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGV 230 (327)
T ss_pred ------------------------c---ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 0 0134444578999998875 999999974 2 234688899999
Q ss_pred cEEEEecCCCC-------------CCCCCc----chHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 188 AGIIVSNHGAR-------------QLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 188 d~I~v~~~gg~-------------~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
|+|+++|+... +...++ ..++.+.++++.++.++||+++|||++++|+.+++.+|||+||+||
T Consensus 231 d~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~ 310 (327)
T cd04738 231 DGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYT 310 (327)
T ss_pred cEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccH
Confidence 99999885210 001122 3366777777776557999999999999999999999999999999
Q ss_pred HHHH
Q 021614 251 PVVY 254 (310)
Q Consensus 251 ~~l~ 254 (310)
++++
T Consensus 311 ~~~~ 314 (327)
T cd04738 311 GLVY 314 (327)
T ss_pred HHHh
Confidence 9986
No 53
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.79 E-value=2.8e-18 Score=167.84 Aligned_cols=141 Identities=26% Similarity=0.315 Sum_probs=115.8
Q ss_pred HHHHHHHHhhCC--CCEEEEecCCHHHHHHHHHcCCcEEEEecCCC-----C-CCCCCcchHHHHHHHHHHh-------c
Q 021614 154 WKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----R-QLDYVPATIMALEEVVKAT-------Q 218 (310)
Q Consensus 154 ~~~i~~ir~~~~--~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg-----~-~~~~~~~~~~~l~~i~~~~-------~ 218 (310)
.+.|+++|+.++ ++|+.+.+.+.++++.+.++|||+|.|++++| + +.+.+++.+..+.+++++. .
T Consensus 271 ~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g 350 (502)
T PRK07107 271 KRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETG 350 (502)
T ss_pred HHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcC
Confidence 578999999986 45566668999999999999999999999888 3 4456778889988887754 2
Q ss_pred CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH--------------------Hhhh--------------------
Q 021614 219 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-------------------- 258 (310)
Q Consensus 219 ~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~--------------------~~~~-------------------- 258 (310)
.++|||++|||+++.|++|||++|||+||+||+|-- +++.
T Consensus 351 ~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~~ 430 (502)
T PRK07107 351 VYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSFE 430 (502)
T ss_pred CcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccccC
Confidence 249999999999999999999999999999998831 1110
Q ss_pred ccH-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021614 259 EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDH 294 (310)
Q Consensus 259 ~G~-------~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (310)
+|. -.+.+++.++..+|++.|.++|..+|.+|+++.
T Consensus 431 egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~~ 473 (502)
T PRK07107 431 EGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQKA 473 (502)
T ss_pred CccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhCC
Confidence 111 128899999999999999999999999999663
No 54
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.77 E-value=7.9e-18 Score=155.38 Aligned_cols=224 Identities=22% Similarity=0.279 Sum_probs=137.5
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeC-CCCC----------------------------
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST---------------------------- 51 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~-~~~~---------------------------- 51 (310)
|+|+++|.+|++||++|+- .. . +....+.+.+.|..+++. +.+.
T Consensus 2 L~~~~~Gl~l~nPi~~asG-~~----~--~~~~~~~~~~~G~Gavv~ksvt~~~~~gn~~pr~~~~~~~~~~~n~~G~~n 74 (295)
T PF01180_consen 2 LSTNFCGLTLKNPIGLASG-LD----K--NGEEIKRLFDAGFGAVVTKSVTPEPREGNPEPRIFRLPEGESILNSMGLPN 74 (295)
T ss_dssp G-EEETTEEESSSEEE-TT-SS----T--SSHHHHHHHHHSSSEEEEEEE-SSGB--SSSS-EEEETTETEEEE---S-B
T ss_pred ccEEECCEEcCCCcEECCc-CC----C--CchhhhhhhcCCccEEEeccccccccccccCCcEEeeccccccccccCCCh
Confidence 6899999999999999863 21 2 223345566777665543 2211
Q ss_pred CCH----HHHHc---cCC---C-ceeEEEEecCC---hHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCC
Q 021614 52 SSV----EEVAS---TGP---G-IRFFQLYVYKD---RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 117 (310)
Q Consensus 52 ~~~----e~i~~---~~~---~-~~~~ql~~~~d---~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~ 117 (310)
..+ +++.+ ... . +..+.+. ..+ .+.+.+.+++++ .|++++++|+.||.... .
T Consensus 75 ~g~~~~~~~~~~~~~~~~~~~~~pvi~Si~-~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~~-~----------- 140 (295)
T PF01180_consen 75 PGLEYYLERLRPILKEAKKDVDIPVIASIN-GDSEEEIEDWAELAKRLE-AGADALELNLSCPNVPG-G----------- 140 (295)
T ss_dssp SHHHHHHHHHHHTHHHTTCH-CEEEEEEE--TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTSTT-S-----------
T ss_pred HHHHHHHHHHHHHhhhcccccceeEEEEee-cCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCCC-c-----------
Confidence 001 11111 111 1 3333443 334 455556666655 78899999999987410 0
Q ss_pred cccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCC---H---HHHHHHHHcCCcEEE
Q 021614 118 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT---A---EDARIAVQAGAAGII 191 (310)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~---~---~~a~~~~~aGad~I~ 191 (310)
..+ ..+++...+.++.+++..++||++|+..+ . +.+..+.+.|+|+|+
T Consensus 141 ------------------------~~~--~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~ 194 (295)
T PF01180_consen 141 ------------------------RPF--GQDPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIV 194 (295)
T ss_dssp ------------------------GGG--GGHHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEE
T ss_pred ------------------------ccc--ccCHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEE
Confidence 000 01223334668888888899999999852 2 235556688999999
Q ss_pred EecCCC----------CCC----C---CC----cchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 192 VSNHGA----------RQL----D---YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 192 v~~~gg----------~~~----~---~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
+.|+.. +.. . +| +.....+.++++.+..++|||++|||+|++|+.+++.+||++|++++
T Consensus 195 ~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~S 274 (295)
T PF01180_consen 195 AINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCS 274 (295)
T ss_dssp E---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESH
T ss_pred EecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheech
Confidence 877421 001 0 12 23456677777777557999999999999999999999999999999
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHHHHHH
Q 021614 251 PVVYSLAAEGEKGVRRVLEMLREEFELAM 279 (310)
Q Consensus 251 ~~l~~~~~~G~~~v~~~l~~l~~~l~~~m 279 (310)
.+++. |.. ++..+.++|+++|
T Consensus 275 al~~~----Gp~----~~~~i~~~L~~~l 295 (295)
T PF01180_consen 275 ALIYR----GPG----VIRRINRELEEWL 295 (295)
T ss_dssp HHHHH----GTT----HHHHHHHHHHHHH
T ss_pred hhhhc----CcH----HHHHHHHHHHhhC
Confidence 99773 653 5778888888876
No 55
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.76 E-value=1.7e-17 Score=162.64 Aligned_cols=143 Identities=21% Similarity=0.323 Sum_probs=114.5
Q ss_pred CCcccHHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCC----CCCCC--C---cchHHHHHHHHHHhc
Q 021614 149 DRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA----RQLDY--V---PATIMALEEVVKATQ 218 (310)
Q Consensus 149 ~~~~~~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg----~~~~~--~---~~~~~~l~~i~~~~~ 218 (310)
+....|+.|+++|+.+ +.+|+++.+.|.++++.+.++|||+|.+++|.| ++... + .+++..+.++.+..
T Consensus 272 ~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~- 350 (505)
T PLN02274 272 DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH- 350 (505)
T ss_pred CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc-
Confidence 3445689999999988 599999999999999999999999999987655 22211 1 23455566665543
Q ss_pred CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH--------------------hhh--------------------
Q 021614 219 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS--------------------LAA-------------------- 258 (310)
Q Consensus 219 ~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~--------------------~~~-------------------- 258 (310)
++|||++|||+++.|+.|+|++||++||+|+.|.-. ++.
T Consensus 351 -~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~ 429 (505)
T PLN02274 351 -GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLK 429 (505)
T ss_pred -CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccc
Confidence 799999999999999999999999999999988431 100
Q ss_pred --ccH-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021614 259 --EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 293 (310)
Q Consensus 259 --~G~-------~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (310)
+|. -.+.+++.++..+|+..|.++|+.+|.||+++
T Consensus 430 v~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 430 IAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred cCCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 111 12889999999999999999999999999987
No 56
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.76 E-value=2.3e-17 Score=145.89 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=119.5
Q ss_pred CceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHH
Q 021614 63 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 142 (310)
Q Consensus 63 ~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (310)
.+..+|+. +.+++.+.+.++.+.+ +++.|+||++||++ ++.. .+.+.
T Consensus 68 ~~vivnv~-~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~---------------~v~~----------------~g~G~ 114 (231)
T TIGR00736 68 ALVSVNVR-FVDLEEAYDVLLTIAE-HADIIEINAHCRQP---------------EITE----------------IGIGQ 114 (231)
T ss_pred CCEEEEEe-cCCHHHHHHHHHHHhc-CCCEEEEECCCCcH---------------HHcC----------------CCCch
Confidence 47889998 7799999999888766 89999999999995 1211 12233
Q ss_pred HhhhccCCcccHHHHHHHHhhCCCCEEEEecCC------HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHH
Q 021614 143 YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 216 (310)
Q Consensus 143 ~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~------~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~ 216 (310)
.+. .||+...++++.+++ .++||++|++.. .+.++.+.++|+|+|+|+. .+.. .+...++.+.++++.
T Consensus 115 ~Ll--~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~--~~~g-~~~a~~~~I~~i~~~ 188 (231)
T TIGR00736 115 ELL--KNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDA--MYPG-KPYADMDLLKILSEE 188 (231)
T ss_pred hhc--CCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEee--CCCC-CchhhHHHHHHHHHh
Confidence 332 377778888999984 589999999852 3568999999999999963 2211 122578889999887
Q ss_pred hcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 217 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 217 ~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+. ++|||++|||++.+|+.+++..|||+||+||+.+.
T Consensus 189 ~~-~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 189 FN-DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred cC-CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 62 49999999999999999999999999999998875
No 57
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.74 E-value=1.7e-16 Score=148.64 Aligned_cols=207 Identities=19% Similarity=0.191 Sum_probs=131.1
Q ss_pred CceeecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeC-CCCCCC--------------------------
Q 021614 1 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTSS-------------------------- 53 (310)
Q Consensus 1 ~~t~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~-~~~~~~-------------------------- 53 (310)
++|+++|.+|++||++|+-.. . +....+...+.|..+.+. |.+..+
T Consensus 46 L~~~~~Gl~l~NPi~lAsG~~-----~--~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n 118 (335)
T TIGR01036 46 LEVTVLGLKFPNPLGLAAGFD-----K--DGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNN 118 (335)
T ss_pred CcEEECCEECCCCcEeCCccC-----C--CHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCC
Confidence 578999999999999965421 2 223555656667665543 332110
Q ss_pred ------HHHHHccCC-CceeEEEEecC------ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCccc
Q 021614 54 ------VEEVASTGP-GIRFFQLYVYK------DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLT 120 (310)
Q Consensus 54 ------~e~i~~~~~-~~~~~ql~~~~------d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~ 120 (310)
++++.+... .+.++.+.... ..+...+.++++.+ .++++++|+.||.... .
T Consensus 119 ~G~~~~l~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~~-~-------------- 182 (335)
T TIGR01036 119 HGADVLVERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTPG-L-------------- 182 (335)
T ss_pred hhHHHHHHHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCCC-c--------------
Confidence 111222111 24455553221 23444455554443 3888888888887410 0
Q ss_pred ccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCC-------CCEEEEecCC------HHHHHHHHHcCC
Q 021614 121 LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-------LPILVKGVLT------AEDARIAVQAGA 187 (310)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~-------~pv~vK~~~~------~~~a~~~~~aGa 187 (310)
. ...+++...+.++++++..+ +||++|+..+ .+.++.+.++|+
T Consensus 183 ----~--------------------~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~Ga 238 (335)
T TIGR01036 183 ----R--------------------DLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGI 238 (335)
T ss_pred ----c--------------------cccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 0 00123334566777777665 9999999843 234788999999
Q ss_pred cEEEEecCCC-------------CCCCCCc----chHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 188 AGIIVSNHGA-------------RQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 188 d~I~v~~~gg-------------~~~~~~~----~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
|+|++.|+.. ....+|+ .....+.++++.+..++|||++|||.+++|+.+++.+|||+|++||
T Consensus 239 dGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~t 318 (335)
T TIGR01036 239 DGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYS 318 (335)
T ss_pred cEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhH
Confidence 9999998531 0001122 2344556666666557999999999999999999999999999999
Q ss_pred HHHH
Q 021614 251 PVVY 254 (310)
Q Consensus 251 ~~l~ 254 (310)
++++
T Consensus 319 a~~~ 322 (335)
T TIGR01036 319 GFIY 322 (335)
T ss_pred HHHH
Confidence 9986
No 58
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.74 E-value=1.2e-16 Score=156.45 Aligned_cols=142 Identities=23% Similarity=0.372 Sum_probs=115.1
Q ss_pred cccHHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCC------CCCCCcchHHHHHHHHHHhc-CCce
Q 021614 151 SLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQ-GRIP 222 (310)
Q Consensus 151 ~~~~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~------~~~~~~~~~~~l~~i~~~~~-~~ip 222 (310)
...|+.|+++++.+ ++||+++.+.|.++++.+.++|||+|.++.+.|. ....+.|.+..+.++.+... .++|
T Consensus 267 ~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~ 346 (495)
T PTZ00314 267 IYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVP 346 (495)
T ss_pred hHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCe
Confidence 34478899999986 7999999999999999999999999998644331 12345677778777766543 3699
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH--------------------hhh-----------------------c
Q 021614 223 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYS--------------------LAA-----------------------E 259 (310)
Q Consensus 223 via~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~--------------------~~~-----------------------~ 259 (310)
+|++|||+++.|+.||+++|||+||+|+.|.-. ++. +
T Consensus 347 vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~~e 426 (495)
T PTZ00314 347 CIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKVAQ 426 (495)
T ss_pred EEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhcccccccccccccccccCC
Confidence 999999999999999999999999999988421 100 0
Q ss_pred cH-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhcc
Q 021614 260 GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 292 (310)
Q Consensus 260 G~-------~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~ 292 (310)
|. ..+.+++.++..+|+..|.++|+.+|.+|++
T Consensus 427 gv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 427 GVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred ceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 10 2388999999999999999999999999998
No 59
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.74 E-value=2.2e-16 Score=150.95 Aligned_cols=262 Identities=21% Similarity=0.233 Sum_probs=174.4
Q ss_pred cccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChHHHHHHHHHHHH
Q 021614 8 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 87 (310)
Q Consensus 8 ~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~~~~~~i~~~~~ 87 (310)
..+..||.++.|+++++ +++...++++++.+.|...--++.+ ...+.. + .....+.|+-+ .....+.+.+
T Consensus 163 ~~i~~~~~~~aMS~GAl-S~eA~~alA~a~~~~G~~sntGEGG-e~~~~~-~-~~~s~I~QvaS-GRFGV~~~yL----- 232 (485)
T COG0069 163 LELKKRFVTGAMSFGAL-SKEAHEALARAMNRIGTKSNTGEGG-EDPERY-E-DGRSAIKQVAS-GRFGVTPEYL----- 232 (485)
T ss_pred ceeeecccccccCCccc-cHHHHHHHHHHHHHhcCcccCCCCC-CCHHHh-c-cccceEEEecc-ccCccCHHHh-----
Confidence 34677999999999987 5888999999999999877666655 333332 1 12345667653 2233333333
Q ss_pred cCCcEEEEeeCC---CCCCcchHHhhhccCCCC-cccccccccccccccccccchhhHHHhhhccCCcc-cHHH----HH
Q 021614 88 AGFKAIALTVDT---PRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKD----VK 158 (310)
Q Consensus 88 ~G~~~i~i~~~~---p~~~~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----i~ 158 (310)
..++.|.|-+.- |..|. .+|. ||++- +.. .+ . .......++|..+.++ +.++ |.
T Consensus 233 ~~a~~ieIKiaQGAKPGeGG---------~Lpg~KV~~~-IA~-----~R-~-~~pG~~~ISP~pHHDiysieDLaqlI~ 295 (485)
T COG0069 233 ANADAIEIKIAQGAKPGEGG---------QLPGEKVTPE-IAK-----TR-G-SPPGVGLISPPPHHDIYSIEDLAQLIK 295 (485)
T ss_pred CccceEEEEeccCCCCCCCC---------CCCCccCCHH-HHH-----hc-C-CCCCCCCcCCCCcccccCHHHHHHHHH
Confidence 345667766652 32211 1122 33220 000 00 0 0111224454444443 3333 66
Q ss_pred HHHhhC-CCCEEEEecCC--HHHHHH-HHHcCCcEEEEecCC-CCC------C-CCCcchHHHHHHHHHHh-----cCCc
Q 021614 159 WLQTIT-KLPILVKGVLT--AEDARI-AVQAGAAGIIVSNHG-ARQ------L-DYVPATIMALEEVVKAT-----QGRI 221 (310)
Q Consensus 159 ~ir~~~-~~pv~vK~~~~--~~~a~~-~~~aGad~I~v~~~g-g~~------~-~~~~~~~~~l~~i~~~~-----~~~i 221 (310)
.+|+.. ..+|.||.+.. .+.+.. +.+++||.|+|+++. |+. . ..|.|....|.++.+.+ ++++
T Consensus 296 dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v 375 (485)
T COG0069 296 DLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKV 375 (485)
T ss_pred HHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCccee
Confidence 666664 46799999853 454444 889999999999974 332 1 23555555666666543 5689
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhc-----------------------------cHHHHHHHHHHHH
Q 021614 222 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLR 272 (310)
Q Consensus 222 pvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~-----------------------------G~~~v~~~l~~l~ 272 (310)
.|+++||++|+.|++|++++|||.|.+|++.+.++.|. .++.|.+++..+.
T Consensus 376 ~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a 455 (485)
T COG0069 376 KLIADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVA 455 (485)
T ss_pred EEEecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887551 3567999999999
Q ss_pred HHHHHHHHHcCCCCHhhhccccee
Q 021614 273 EEFELAMALSGCRSLKEITRDHIV 296 (310)
Q Consensus 273 ~~l~~~m~~~G~~~i~~l~~~~~~ 296 (310)
+|++++|+.+|..++.+|+++...
T Consensus 456 ~e~rella~lG~~~l~el~g~~d~ 479 (485)
T COG0069 456 EELRELLAALGKRSLSELIGRTDL 479 (485)
T ss_pred HHHHHHHHHhCCCCHHHHhcchhh
Confidence 999999999999999999977433
No 60
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.73 E-value=8.8e-17 Score=156.32 Aligned_cols=141 Identities=29% Similarity=0.418 Sum_probs=114.7
Q ss_pred ccHHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCC-----CC-CCCcchHHHHHHHHHHhc-CCceE
Q 021614 152 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QL-DYVPATIMALEEVVKATQ-GRIPV 223 (310)
Q Consensus 152 ~~~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~-----~~-~~~~~~~~~l~~i~~~~~-~~ipv 223 (310)
..++.|+++|+.+ ++||+++.+.|.++++.+.++|+|+|.++.+.|. .. .++.+.+..+.++.+... .++||
T Consensus 251 ~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpv 330 (450)
T TIGR01302 251 YVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPV 330 (450)
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeE
Confidence 3568899999984 8999999999999999999999999999754431 11 246677888877766542 47999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH--------------------hhh------------------------c
Q 021614 224 FLDGGVRRGTDVFKALALGASGIFIGRPVVYS--------------------LAA------------------------E 259 (310)
Q Consensus 224 ia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~--------------------~~~------------------------~ 259 (310)
|++|||+++.|+.|+|++||++||+|+.|.-. ++. +
T Consensus 331 iadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~~ry~~~~~~~~~~~~e 410 (450)
T TIGR01302 331 IADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKTKKFVPE 410 (450)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhccccccccccccccccccCC
Confidence 99999999999999999999999999988321 100 1
Q ss_pred cH-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhcc
Q 021614 260 GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 292 (310)
Q Consensus 260 G~-------~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~ 292 (310)
|. -.+.+++.++..+|++.|.++|+.++.+|+.
T Consensus 411 gv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~ 450 (450)
T TIGR01302 411 GVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELRE 450 (450)
T ss_pred ceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHhC
Confidence 11 1388999999999999999999999999974
No 61
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.73 E-value=1.3e-16 Score=155.15 Aligned_cols=145 Identities=26% Similarity=0.295 Sum_probs=117.5
Q ss_pred CcccHHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCC------CCCCcchHHHHHHHHHHhc-CCc
Q 021614 150 RSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GRI 221 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~------~~~~~~~~~~l~~i~~~~~-~~i 221 (310)
+....+.++++++.+ ++||++..+.|.+.++.+.++|+|+|.|+..+|+. ..++.++...+.++.+... .++
T Consensus 250 ~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~ 329 (475)
T TIGR01303 250 QVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGG 329 (475)
T ss_pred cHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCC
Confidence 344568899999976 89999988999999999999999999998876642 1246677777777654432 279
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH---------------------Hhh-----------------------
Q 021614 222 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY---------------------SLA----------------------- 257 (310)
Q Consensus 222 pvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~---------------------~~~----------------------- 257 (310)
|||++|||+++.|+.|+|++||++||+|+.|-- +++
T Consensus 330 ~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~v 409 (475)
T TIGR01303 330 HVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKALF 409 (475)
T ss_pred cEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhccccc
Confidence 999999999999999999999999999998721 110
Q ss_pred hccHHH-----------HHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021614 258 AEGEKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRDH 294 (310)
Q Consensus 258 ~~G~~~-----------v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (310)
.+|.++ +.+++.++..+|+..|.++|+.+|.||+++.
T Consensus 410 ~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~ 457 (475)
T TIGR01303 410 EEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERA 457 (475)
T ss_pred cCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCC
Confidence 023331 7789999999999999999999999999874
No 62
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.71 E-value=4e-16 Score=153.16 Aligned_cols=141 Identities=27% Similarity=0.408 Sum_probs=116.2
Q ss_pred cHHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCC-----CCC-CCCcchHHHHHHHHHHhc-CCceEE
Q 021614 153 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQL-DYVPATIMALEEVVKATQ-GRIPVF 224 (310)
Q Consensus 153 ~~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg-----~~~-~~~~~~~~~l~~i~~~~~-~~ipvi 224 (310)
.++.++++++++ +.||+++.+.|.++++.+.++|+|+|.++..++ +.. .++.++++.+.++++..+ .++|||
T Consensus 256 vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi 335 (486)
T PRK05567 256 VLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI 335 (486)
T ss_pred HHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE
Confidence 467899999987 899999999999999999999999999854332 333 346788999988877653 369999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEcHHHHHH--------------------hhh------------------------cc
Q 021614 225 LDGGVRRGTDVFKALALGASGIFIGRPVVYS--------------------LAA------------------------EG 260 (310)
Q Consensus 225 a~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~--------------------~~~------------------------~G 260 (310)
++|||+++.|+.|||++|||+||+|++|--. ++. +|
T Consensus 336 adGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g 415 (486)
T PRK05567 336 ADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEG 415 (486)
T ss_pred EcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCc
Confidence 9999999999999999999999999988321 100 11
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021614 261 E-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 293 (310)
Q Consensus 261 ~-------~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (310)
. -.+.+++.++..+|++.|.++|+.+|.+|+.+
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 416 IEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 1 13889999999999999999999999999955
No 63
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.69 E-value=4.4e-15 Score=137.54 Aligned_cols=184 Identities=22% Similarity=0.249 Sum_probs=129.1
Q ss_pred eecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHH----H---ccCCCceeEEEEecCChH
Q 021614 4 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV----A---STGPGIRFFQLYVYKDRN 76 (310)
Q Consensus 4 ~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i----~---~~~~~~~~~ql~~~~d~~ 76 (310)
++|| +..||+.|||++. + +..|+.++.++|....++... .+++++ . +....+..+++.... +
T Consensus 6 ~~lg--i~~Pii~apM~~~--s----~~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvn~~~~~-~- 74 (307)
T TIGR03151 6 DLLG--IEYPIFQGGMAWV--A----TGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPFGVNIMLLS-P- 74 (307)
T ss_pred HHhC--CCCCEEcCCCCCC--C----CHHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCcEEeeecCC-C-
Confidence 4566 5699999999874 3 458999999999887777533 344333 2 222234455554321 1
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHH
Q 021614 77 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 156 (310)
Q Consensus 77 ~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (310)
...+.++.+.+.|++.+.++.+. | .+.
T Consensus 75 ~~~~~~~~~~~~~v~~v~~~~g~--------------------------------------------------p---~~~ 101 (307)
T TIGR03151 75 FVDELVDLVIEEKVPVVTTGAGN--------------------------------------------------P---GKY 101 (307)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCC--------------------------------------------------c---HHH
Confidence 12345555667788776543221 1 135
Q ss_pred HHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecC--CCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHH
Q 021614 157 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 234 (310)
Q Consensus 157 i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 234 (310)
++++++. ++.++. .+.+.++++.+.++|+|.|++.++ ||+. +..+++..+.++++.+ ++|||++|||.++.|
T Consensus 102 i~~lk~~-g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~ 175 (307)
T TIGR03151 102 IPRLKEN-GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRG 175 (307)
T ss_pred HHHHHHc-CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHH
Confidence 6666664 666664 557899999999999999999875 2332 2235788888888776 799999999999999
Q ss_pred HHHHHHcCCCEEEEcHHHHHHhh
Q 021614 235 VFKALALGASGIFIGRPVVYSLA 257 (310)
Q Consensus 235 v~k~l~~GAd~V~ig~~~l~~~~ 257 (310)
+.+++++|||+|++|+.|+....
T Consensus 176 ~~~al~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 176 MAAAFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred HHHHHHcCCCEeecchHHhcccc
Confidence 99999999999999999987543
No 64
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.68 E-value=4.6e-15 Score=156.63 Aligned_cols=254 Identities=21% Similarity=0.172 Sum_probs=170.9
Q ss_pred cceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChHHHHHHHHHHHHcCCc
Q 021614 12 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK 91 (310)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~~~~~~i~~~~~~G~~ 91 (310)
.+|.++.|+++++ +++...++++++.+.|.....++.. ...++... .....++|+-++ ....+.+.+. .++
T Consensus 859 ~rf~~~aMSfGal-S~eA~~aLA~a~~~~G~~sntGEGG-~~p~~~~~-~~~~~i~QiaSG-rFGv~~e~l~-----~a~ 929 (1485)
T PRK11750 859 KRFDSAAMSIGAL-SPEAHEALAIAMNRLGGRSNSGEGG-EDPARYGT-EKVSKIKQVASG-RFGVTPAYLV-----NAE 929 (1485)
T ss_pred cccccccCCCCcc-CHHHHHHHHHHHHHhCCceecCCCC-CCHHHHhc-ccCCeEEEccCC-cCCCCHHHhc-----cCC
Confidence 4688999999877 5788899999999999887666655 45444422 223456787632 2233333332 367
Q ss_pred EEEEeeCC---CCCCcchHHhhhccCCCC-cccccccccccccccccccchhhHHHhhhccCCcc-cHHH----HHHHHh
Q 021614 92 AIALTVDT---PRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKD----VKWLQT 162 (310)
Q Consensus 92 ~i~i~~~~---p~~~~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----i~~ir~ 162 (310)
.|.|.++- |..|. .+|. ||++. +.. ++ . ...+..+++|..++++ +.|+ |.++|+
T Consensus 930 ~ieIKi~QGAKPG~GG---------~Lpg~KV~~~-IA~-----~R-~-~~~G~~liSP~phhdiySieDL~qlI~~Lk~ 992 (1485)
T PRK11750 930 VLQIKVAQGAKPGEGG---------QLPGDKVNPL-IAR-----LR-Y-SVPGVTLISPPPHHDIYSIEDLAQLIFDLKQ 992 (1485)
T ss_pred EEEEEecCCCCCCCCC---------cCccccCCHH-HHH-----Hc-C-CCCCCCCCCCCCCccCCCHHHHHHHHHHHHH
Confidence 78887762 22211 1121 33220 000 00 0 1112234555555554 4444 556666
Q ss_pred hC-CCCEEEEecCC--H-HHHHHHHHcCCcEEEEecCCC-CC------C-CCCcchHHHHHHHHHHh-----cCCceEEE
Q 021614 163 IT-KLPILVKGVLT--A-EDARIAVQAGAAGIIVSNHGA-RQ------L-DYVPATIMALEEVVKAT-----QGRIPVFL 225 (310)
Q Consensus 163 ~~-~~pv~vK~~~~--~-~~a~~~~~aGad~I~v~~~gg-~~------~-~~~~~~~~~l~~i~~~~-----~~~ipvia 225 (310)
.. +.||.||.+.+ . +.+..+.++|+|+|+|+++.| +. . +.+.|....|.++.+.+ ++++.+++
T Consensus 993 ~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a 1072 (1485)
T PRK11750 993 VNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQV 1072 (1485)
T ss_pred hCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 65 57999999853 2 334467889999999999754 32 1 12444444566665543 56799999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhc----------------------------cHHHHHHHHHHHHHHHHH
Q 021614 226 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------GEKGVRRVLEMLREEFEL 277 (310)
Q Consensus 226 ~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~----------------------------G~~~v~~~l~~l~~~l~~ 277 (310)
+||++|+.|++|++++|||.|.+|+++|.+++|. ..+.|.+++..+.+|++.
T Consensus 1073 ~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~ 1152 (1485)
T PRK11750 1073 DGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETRE 1152 (1485)
T ss_pred cCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987652 135799999999999999
Q ss_pred HHHHcCCCCHhhhc
Q 021614 278 AMALSGCRSLKEIT 291 (310)
Q Consensus 278 ~m~~~G~~~i~~l~ 291 (310)
+|+.+|.++++|+.
T Consensus 1153 ~la~lG~~s~~elv 1166 (1485)
T PRK11750 1153 WMAQLGVRSLEDLI 1166 (1485)
T ss_pred HHHHhCCCCHHHhc
Confidence 99999999999994
No 65
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.62 E-value=1.7e-14 Score=140.53 Aligned_cols=143 Identities=29% Similarity=0.361 Sum_probs=115.7
Q ss_pred ccHHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCC----CCC--CCcchHHHHHHHHHHhc-CCceE
Q 021614 152 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLD--YVPATIMALEEVVKATQ-GRIPV 223 (310)
Q Consensus 152 ~~~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~----~~~--~~~~~~~~l~~i~~~~~-~~ipv 223 (310)
..++.|+++|+.+ +.+|+++.+.|.+.++.+.++|+|+|.|.-..|. +.. .+.|.+..+.++++... .++||
T Consensus 254 ~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~v 333 (479)
T PRK07807 254 KMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHV 333 (479)
T ss_pred HHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcE
Confidence 3468899999987 7999999999999999999999999998654432 111 24578888888877543 37999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH---------------------------hh-----------------hc
Q 021614 224 FLDGGVRRGTDVFKALALGASGIFIGRPVVYS---------------------------LA-----------------AE 259 (310)
Q Consensus 224 ia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~---------------------------~~-----------------~~ 259 (310)
|++|||+++.|+.|+|++||++||+|+.|.-. +. .+
T Consensus 334 ia~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~e 413 (479)
T PRK07807 334 WADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFEE 413 (479)
T ss_pred EecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCCC
Confidence 99999999999999999999999999988321 10 01
Q ss_pred cHH-----------HHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021614 260 GEK-----------GVRRVLEMLREEFELAMALSGCRSLKEITRDH 294 (310)
Q Consensus 260 G~~-----------~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (310)
|.+ .+..++.++..+|+..|.++|..+|.+|+.+.
T Consensus 414 Gv~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~~ 459 (479)
T PRK07807 414 GISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHERA 459 (479)
T ss_pred CccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhCC
Confidence 211 17788999999999999999999999999874
No 66
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.61 E-value=6.7e-14 Score=131.10 Aligned_cols=189 Identities=24% Similarity=0.295 Sum_probs=112.0
Q ss_pred eecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHH-------ccCCCceeEEEEecCChH
Q 021614 4 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGPGIRFFQLYVYKDRN 76 (310)
Q Consensus 4 ~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~-------~~~~~~~~~ql~~~~d~~ 76 (310)
++|| ++.||+.+||++. + ...|+.+..+.|....++... .+.+++. +....+..+++.......
T Consensus 6 ~~lg--i~~PIiqapM~~i--s----~~~LaaAVs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~ 76 (330)
T PF03060_consen 6 ELLG--IKYPIIQAPMGGI--S----TPELAAAVSNAGGLGFLGAGG-LTPEQLREEIRKIRALTDKPFGVNLFLPPPDP 76 (330)
T ss_dssp HHHT---SSSEEE---TTT--S----SHHHHHHHHHTTSBEEEECTT-SSHHHHHHHHHHHHHH-SS-EEEEEETTSTTH
T ss_pred HHhC--CCcCEEcCCCCCC--C----hHHHHHHHHhCCCEeeccccc-cChHHHHHHHHHHHhhccccccccccccCccc
Confidence 4556 5699999999884 3 348999999999888888533 4444332 222346667777543332
Q ss_pred HHH----------HHHHHHHHcCCc--------------EEEEeeCCCCCCcchHHhhhccCCCCccccccccccccccc
Q 021614 77 VVA----------QLVRRAERAGFK--------------AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKM 132 (310)
Q Consensus 77 ~~~----------~~i~~~~~~G~~--------------~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~ 132 (310)
... ...+...+.+.. .+..+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G---------------------------------- 122 (330)
T PF03060_consen 77 ADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFG---------------------------------- 122 (330)
T ss_dssp HHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESS----------------------------------
T ss_pred chhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecc----------------------------------
Confidence 222 111222233332 2222111
Q ss_pred ccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecC--CCCCCCCCcchHHHH
Q 021614 133 DEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMAL 210 (310)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~--gg~~~~~~~~~~~~l 210 (310)
.|. .+.++++++ .++.++. .+.++++|+.+.++|+|+|++.+. ||+......+++..+
T Consensus 123 ----------------~p~--~~~i~~l~~-~gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~ 182 (330)
T PF03060_consen 123 ----------------LPP--PEVIERLHA-AGIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLL 182 (330)
T ss_dssp ----------------SC---HHHHHHHHH-TT-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHH
T ss_pred ----------------cch--HHHHHHHHH-cCCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHH
Confidence 111 245666654 4666665 457899999999999999999874 444321111467777
Q ss_pred HHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhh
Q 021614 211 EEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 257 (310)
Q Consensus 211 ~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~ 257 (310)
.++.+.+ ++|||+.|||.++.++..+|++|||+|++|+.|+....
T Consensus 183 ~~v~~~~--~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 183 PQVRDAV--DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEE 227 (330)
T ss_dssp HHHHHH---SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTT
T ss_pred HHHhhhc--CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEeccc
Confidence 8888776 69999999999999999999999999999999987543
No 67
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.57 E-value=1.3e-13 Score=123.73 Aligned_cols=122 Identities=27% Similarity=0.406 Sum_probs=97.5
Q ss_pred CCCEEEEecCCH------HHHHHHHHcCCcEEEEecCCC-C-------------CCCCC----cchHHHHHHHHHHhcCC
Q 021614 165 KLPILVKGVLTA------EDARIAVQAGAAGIIVSNHGA-R-------------QLDYV----PATIMALEEVVKATQGR 220 (310)
Q Consensus 165 ~~pv~vK~~~~~------~~a~~~~~aGad~I~v~~~gg-~-------------~~~~~----~~~~~~l~~i~~~~~~~ 220 (310)
+.|+.+|...+. +.+..+.+.+.|+++++|..- + ..-++ +...+.+.++++..+++
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 459999997542 345667789999999998531 1 00012 23456677777778889
Q ss_pred ceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccc
Q 021614 221 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 294 (310)
Q Consensus 221 ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~ 294 (310)
||||.+|||.|+.|+.+.+.+||+.|+++++|.+ +|.. +++.++.||...|...|.+++.|+++.+
T Consensus 332 IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y----eGp~----i~~kIk~El~~ll~~kG~t~v~d~iG~~ 397 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY----EGPA----IIEKIKRELSALLKAKGFTSVDDAIGKD 397 (398)
T ss_pred CceEeecCccccHhHHHHHhcCchHHHHHHHHhh----cCch----hHHHHHHHHHHHHHhcCCCcHHHhccCC
Confidence 9999999999999999999999999999999876 4663 6889999999999999999999998753
No 68
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.54 E-value=1.3e-12 Score=116.61 Aligned_cols=187 Identities=24% Similarity=0.301 Sum_probs=125.2
Q ss_pred CcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHH-------HHccCCCceeEEEEecCCh-HHHHHHH
Q 021614 11 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE-------VASTGPGIRFFQLYVYKDR-NVVAQLV 82 (310)
Q Consensus 11 ~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~-------i~~~~~~~~~~ql~~~~d~-~~~~~~i 82 (310)
..|++.|||.|. + +..+++++.++|....++... .+.++ +.+..+.+..+++.. .+. ....+.+
T Consensus 2 ~~pi~~a~m~g~--~----~~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i~-~~~~~~~~~~~ 73 (236)
T cd04730 2 RYPIIQAPMAGV--S----TPELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLLV-PSSNPDFEALL 73 (236)
T ss_pred CCCEECCCCCCC--C----CHHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEec-CCCCcCHHHHH
Confidence 479999999875 3 668999999998544443321 12222 222211244567773 332 3566677
Q ss_pred HHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHh
Q 021614 83 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 162 (310)
Q Consensus 83 ~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~ 162 (310)
+.+.++|++.+.++.+.+ .+.++++++
T Consensus 74 ~~~~~~g~d~v~l~~~~~-----------------------------------------------------~~~~~~~~~ 100 (236)
T cd04730 74 EVALEEGVPVVSFSFGPP-----------------------------------------------------AEVVERLKA 100 (236)
T ss_pred HHHHhCCCCEEEEcCCCC-----------------------------------------------------HHHHHHHHH
Confidence 888889999987642200 123444443
Q ss_pred hCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCC--CCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Q 021614 163 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 240 (310)
Q Consensus 163 ~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~g--g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~ 240 (310)
.+++++++ +.+.++++.+.+.|+|+|.+.+.+ |.........++.+.++++.. ++|+++.|||++++|+.+++.
T Consensus 101 -~~i~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~ 176 (236)
T cd04730 101 -AGIKVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALA 176 (236)
T ss_pred -cCCEEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHH
Confidence 36777765 456788899999999999886642 211111124566777777665 799999999999999999999
Q ss_pred cCCCEEEEcHHHHHHhhhccHH
Q 021614 241 LGASGIFIGRPVVYSLAAEGEK 262 (310)
Q Consensus 241 ~GAd~V~ig~~~l~~~~~~G~~ 262 (310)
.|||+|++||+++....+.+..
T Consensus 177 ~GadgV~vgS~l~~~~e~~~~~ 198 (236)
T cd04730 177 LGADGVQMGTRFLATEESGASP 198 (236)
T ss_pred cCCcEEEEchhhhcCcccCCCH
Confidence 9999999999999876554443
No 69
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.52 E-value=2.9e-13 Score=127.51 Aligned_cols=204 Identities=17% Similarity=0.212 Sum_probs=144.9
Q ss_pred cceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCC-H------H-HHHccCC--CceeEEEEecCChHHHHHH
Q 021614 12 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS-V------E-EVASTGP--GIRFFQLYVYKDRNVVAQL 81 (310)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~-~------e-~i~~~~~--~~~~~ql~~~~d~~~~~~~ 81 (310)
--.|+||++-. ||++|+|.|.++|+..++|+|.-+. + | .+.+.+. ....+||- ++.++.+.+.
T Consensus 265 ~K~~LaPLTTv------GNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQla-g~~pdt~~ka 337 (614)
T KOG2333|consen 265 DKKYLAPLTTV------GNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLA-GSKPDTAAKA 337 (614)
T ss_pred cceeecccccc------CCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEec-cCChHHHHHH
Confidence 45789998543 3679999999999999999985221 1 1 1222222 35678998 7778888877
Q ss_pred HHHH-HHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHH
Q 021614 82 VRRA-ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 160 (310)
Q Consensus 82 i~~~-~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 160 (310)
.+.+ +...++.|+||++||-. + | .++ |++.+++. .|......++..
T Consensus 338 aq~i~e~~~VDFIDlN~GCPID------l---------v------------y~q----G~GsALl~--rp~rl~~~l~~m 384 (614)
T KOG2333|consen 338 AQVIAETCDVDFIDLNMGCPID------L---------V------------YRQ----GGGSALLN--RPARLIRILRAM 384 (614)
T ss_pred HHHHHhhcceeeeeccCCCChh------e---------e------------ecc----CCcchhhc--CcHHHHHHHHHH
Confidence 7765 45678999999999884 1 1 011 22333332 344445555555
Q ss_pred HhhC-CCCEEEEecCC--------HHHHHHHH-HcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCC
Q 021614 161 QTIT-KLPILVKGVLT--------AEDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 230 (310)
Q Consensus 161 r~~~-~~pv~vK~~~~--------~~~a~~~~-~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 230 (310)
.... ++||.||+... .+-...+. +.|+++|+++++...|.+.....|+.+.++.+.++..+|+|++|.|.
T Consensus 385 ~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~ 464 (614)
T KOG2333|consen 385 NAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDIL 464 (614)
T ss_pred HHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccc
Confidence 5555 46999999732 12344444 89999999988765555556678999999988876569999999999
Q ss_pred CHHHHHHHHHcC--CCEEEEcH-----HHHHH
Q 021614 231 RGTDVFKALALG--ASGIFIGR-----PVVYS 255 (310)
Q Consensus 231 ~~~dv~k~l~~G--Ad~V~ig~-----~~l~~ 255 (310)
|.+|-.+-+..+ .+.||||| ||+|.
T Consensus 465 S~eDw~~~~~~~p~v~svMIaRGALIKPWIFt 496 (614)
T KOG2333|consen 465 SWEDWYERLNQNPNVDSVMIARGALIKPWIFT 496 (614)
T ss_pred cHHHHHHHhhcCCCcceEEeeccccccchHhh
Confidence 999999988865 89999999 77775
No 70
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.48 E-value=2.6e-12 Score=120.53 Aligned_cols=217 Identities=18% Similarity=0.177 Sum_probs=138.7
Q ss_pred eeecCcccCcceeeccccccccC-----CCHHHHHHHHHHHHcCCeeEeCCCCC--------------CC------HHHH
Q 021614 3 TTVLGFKISMPIMIAPTAMQKMA-----HPEGEYATARAASAAGTIMTLSSWST--------------SS------VEEV 57 (310)
Q Consensus 3 t~l~g~~~~~Pi~iapm~~~~~~-----~~~~~~~la~~a~~~g~~~~~~~~~~--------------~~------~e~i 57 (310)
.+|.+.++++.|+.+||+..... ..+....+-+.-++-|+.+++++... .. ++++
T Consensus 7 ~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l 86 (337)
T PRK13523 7 YTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKL 86 (337)
T ss_pred eeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHH
Confidence 46788999999999999532111 12334555666666778887766310 01 1112
Q ss_pred Hc---cCCCceeEEEEecC---------------------------ChH-------HHHHHHHHHHHcCCcEEEEeeC--
Q 021614 58 AS---TGPGIRFFQLYVYK---------------------------DRN-------VVAQLVRRAERAGFKAIALTVD-- 98 (310)
Q Consensus 58 ~~---~~~~~~~~ql~~~~---------------------------d~~-------~~~~~i~~~~~~G~~~i~i~~~-- 98 (310)
.+ ......++||+... +.+ ...+..++++++|||+|+||..
T Consensus 87 ~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahG 166 (337)
T PRK13523 87 VTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHG 166 (337)
T ss_pred HHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 11 11235677885321 111 2234455677899999999987
Q ss_pred -------CCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEE
Q 021614 99 -------TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK 171 (310)
Q Consensus 99 -------~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK 171 (310)
+|...+|..+. | +.+ . ....+..++++.||+.++.||.+|
T Consensus 167 yLl~qFlSp~~N~RtD~y-----------------------------G-Gsl-e--nR~Rf~~eii~~ir~~~~~~v~vR 213 (337)
T PRK13523 167 YLINEFLSPLSNKRTDEY-----------------------------G-GSP-E--NRYRFLREIIDAVKEVWDGPLFVR 213 (337)
T ss_pred hHHHHhcCCccCCcCCCC-----------------------------C-CCH-H--HHHHHHHHHHHHHHHhcCCCeEEE
Confidence 44443332110 0 111 0 123456789999999999999999
Q ss_pred ecC--------CHHH----HHHHHHcCCcEEEEecCCCCC--CCCC-cchHHHHHHHHHHhcCCceEEEecCCCCHHHHH
Q 021614 172 GVL--------TAED----ARIAVQAGAAGIIVSNHGARQ--LDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 236 (310)
Q Consensus 172 ~~~--------~~~~----a~~~~~aGad~I~v~~~gg~~--~~~~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~ 236 (310)
+.. +.++ ++.+.++|+|+|.|+...... .... ...+....++++.+ ++||+++|+|++++++.
T Consensus 214 is~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~ 291 (337)
T PRK13523 214 ISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA--NIATGAVGLITSGAQAE 291 (337)
T ss_pred ecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc--CCcEEEeCCCCCHHHHH
Confidence 873 4443 578888999999998643111 0111 11344556666665 79999999999999999
Q ss_pred HHHHcC-CCEEEEcHHHHH
Q 021614 237 KALALG-ASGIFIGRPVVY 254 (310)
Q Consensus 237 k~l~~G-Ad~V~ig~~~l~ 254 (310)
++++.| ||+|++||+++.
T Consensus 292 ~~l~~g~~D~V~~gR~~ia 310 (337)
T PRK13523 292 EILQNNRADLIFIGRELLR 310 (337)
T ss_pred HHHHcCCCChHHhhHHHHh
Confidence 999987 999999999986
No 71
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.47 E-value=2.2e-13 Score=126.08 Aligned_cols=146 Identities=27% Similarity=0.355 Sum_probs=111.2
Q ss_pred cCCcccHHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCC----C--CCCCcchHHHHHHHHHHh-cC
Q 021614 148 IDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKAT-QG 219 (310)
Q Consensus 148 ~~~~~~~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~----~--~~~~~~~~~~l~~i~~~~-~~ 219 (310)
++..+..++|+++++.+ ++.|+...+.|.+.++.++++|||++.|....|. | ..-+.+...++.++.+.. +.
T Consensus 274 GnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~ 353 (503)
T KOG2550|consen 274 GNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQF 353 (503)
T ss_pred CcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhc
Confidence 45556689999999987 6889988899999999999999999999764442 2 111333344444443322 23
Q ss_pred CceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH--------------------HH------hh----------------
Q 021614 220 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YS------LA---------------- 257 (310)
Q Consensus 220 ~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l--------------------~~------~~---------------- 257 (310)
.+|+|++|||++..++.|+|.+||+.||+|+-+- ++ +.
T Consensus 354 gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s~~rY~~e~dkvki 433 (503)
T KOG2550|consen 354 GVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVDKVKI 433 (503)
T ss_pred CCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhhhhccccccceEee
Confidence 7999999999999999999999999999998541 11 11
Q ss_pred hccH-------HHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021614 258 AEGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 293 (310)
Q Consensus 258 ~~G~-------~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (310)
++|. -++.+++..+..+++..|...|+.+++++++.
T Consensus 434 AQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 434 AQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREM 476 (503)
T ss_pred ccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 0121 23889999999999999999999999999865
No 72
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.43 E-value=6.9e-12 Score=117.35 Aligned_cols=104 Identities=23% Similarity=0.230 Sum_probs=79.6
Q ss_pred CcccHHHHHHHHhhC--CCCEEEEecC--------CHHH----HHHHHHcCCcEEEEecCCCCCCCC--------CcchH
Q 021614 150 RSLSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQLDY--------VPATI 207 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~--~~pv~vK~~~--------~~~~----a~~~~~aGad~I~v~~~gg~~~~~--------~~~~~ 207 (310)
..+..++++.+|+.+ +.||.+|+.. +.++ ++.+.+.|+|+|.+++....+... ....+
T Consensus 191 ~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~ 270 (327)
T cd02803 191 ARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFL 270 (327)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhH
Confidence 345678999999987 7899999862 3333 678899999999998754322110 12234
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHc-CCCEEEEcHHHHHH
Q 021614 208 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVYS 255 (310)
Q Consensus 208 ~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~-GAd~V~ig~~~l~~ 255 (310)
..+..+++.+ ++||+++|||++++++.++++. |||.|++||+++..
T Consensus 271 ~~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~lad 317 (327)
T cd02803 271 ELAEKIKKAV--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLAD 317 (327)
T ss_pred HHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhC
Confidence 5566666665 7999999999999999999998 69999999999863
No 73
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.43 E-value=1.8e-11 Score=116.76 Aligned_cols=222 Identities=18% Similarity=0.169 Sum_probs=131.3
Q ss_pred eecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHH-------cc-C-CCceeEEEEec-C
Q 021614 4 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------ST-G-PGIRFFQLYVY-K 73 (310)
Q Consensus 4 ~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~-------~~-~-~~~~~~ql~~~-~ 73 (310)
+++| +..|++.+||+++ .+ ...|+.+..++|....++... .+++++. +. . ..+..++|+.. .
T Consensus 8 ~~lg--iryPii~gpMa~G-is----s~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~ 79 (418)
T cd04742 8 EDYG--LRYAYVAGAMARG-IA----SAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPD 79 (418)
T ss_pred HHhC--CCccEECCcccCC-CC----CHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCC
Confidence 3455 5699999999843 23 448999999999888887654 3454433 21 2 24777888753 3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEe--eCCCCCCcchHHhhhccCC-CCc-ccccccccccccccccccchh-hHHHhhhcc
Q 021614 74 DRNVVAQLVRRAERAGFKAIALT--VDTPRLGRREADIKNRFTL-PPF-LTLKNFQGLDLGKMDEANDSG-LAAYVAGQI 148 (310)
Q Consensus 74 d~~~~~~~i~~~~~~G~~~i~i~--~~~p~~~~r~~~~~~~~~~-p~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 148 (310)
+++...+.++.+.+.|++.+... ++.+....+.++- ++.. +.+ +.... ..+.+-.... ++..+++
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~--G~~~~~~g~~~~~~------~ViakVsr~evAs~~f~p-- 149 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAK--GLRRDADGRVQIAN------RIIAKVSRPEVAEAFMSP-- 149 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEeccccCCCcchhhHHhc--CCcccccccccccc------eEEEecCChhhhhhhcCC--
Confidence 44555667788888999887654 2221111121110 0000 000 00000 0000000011 1112221
Q ss_pred CCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcC-CcEEEEec-CCCCCCCCCcchHHHHHHHH---HHh------
Q 021614 149 DRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVV---KAT------ 217 (310)
Q Consensus 149 ~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aG-ad~I~v~~-~gg~~~~~~~~~~~~l~~i~---~~~------ 217 (310)
..-+.++++.+. +..|.++|+.+.+.| +|.|++.. .||+. + ..+....+..+. +.+
T Consensus 150 ---pp~~~v~~L~~~--------G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~-g-~~~~~~Llp~v~~l~d~v~~~~~~ 216 (418)
T cd04742 150 ---APERILKKLLAE--------GKITEEQAELARRVPVADDITVEADSGGHT-D-NRPLSVLLPTIIRLRDELAARYGY 216 (418)
T ss_pred ---CCHHHHHHHHHc--------CCCCHHHHHHHHhCCCCCEEEEcccCCCCC-C-CccHHhHHHHHHHHHHHHhhcccc
Confidence 124677777764 334999999999999 59998863 23332 1 123344444443 222
Q ss_pred cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHh
Q 021614 218 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 256 (310)
Q Consensus 218 ~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~ 256 (310)
..++||++.|||.++.++..++++|||+|++||.|+...
T Consensus 217 ~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~ 255 (418)
T cd04742 217 RRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTV 255 (418)
T ss_pred CCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCc
Confidence 125999999999999999999999999999999998643
No 74
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.42 E-value=1.1e-11 Score=108.75 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=127.3
Q ss_pred EEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCC-CC-cccccccccccccccccccchhhHHHhhh
Q 021614 69 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PP-FLTLKNFQGLDLGKMDEANDSGLAAYVAG 146 (310)
Q Consensus 69 l~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~-p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (310)
+.-..+.+...++++.+.+.|+..++||+++|......+.++.+|.. |. .++.+++.. ..+++.....|+++.++|
T Consensus 18 vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~--~~~~~~a~~aGA~FivsP 95 (213)
T PRK06552 18 VVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLD--AVTARLAILAGAQFIVSP 95 (213)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCC--HHHHHHHHHcCCCEEECC
Confidence 33367889999999999999999999999999877777888877743 32 456666553 234455556777778776
Q ss_pred ccCCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEe
Q 021614 147 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 226 (310)
Q Consensus 147 ~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~ 226 (310)
..+ -++++. +...++|++ -++.|+.++..+.++|+|+|.++...- .+ ...+..++..+ ..+|+++.
T Consensus 96 ~~~----~~v~~~-~~~~~i~~i-PG~~T~~E~~~A~~~Gad~vklFPa~~----~G---~~~ik~l~~~~-p~ip~~at 161 (213)
T PRK06552 96 SFN----RETAKI-CNLYQIPYL-PGCMTVTEIVTALEAGSEIVKLFPGST----LG---PSFIKAIKGPL-PQVNVMVT 161 (213)
T ss_pred CCC----HHHHHH-HHHcCCCEE-CCcCCHHHHHHHHHcCCCEEEECCccc----CC---HHHHHHHhhhC-CCCEEEEE
Confidence 555 344544 455688877 577899999999999999999965211 12 34455544443 36999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 227 GGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 227 GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
|||. .+++.+++++||+++.+|+.++..
T Consensus 162 GGI~-~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 162 GGVN-LDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred CCCC-HHHHHHHHHCCCcEEEEchHHhCc
Confidence 9998 899999999999999999999643
No 75
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.40 E-value=3e-11 Score=113.78 Aligned_cols=104 Identities=17% Similarity=0.191 Sum_probs=74.2
Q ss_pred CcccHHHHHHHHhhCCCCEE--EEecC--------CHHH----HHHHHHcC-CcEEEEecCCCCCC----------CCCc
Q 021614 150 RSLSWKDVKWLQTITKLPIL--VKGVL--------TAED----ARIAVQAG-AAGIIVSNHGARQL----------DYVP 204 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~~~pv~--vK~~~--------~~~~----a~~~~~aG-ad~I~v~~~gg~~~----------~~~~ 204 (310)
..+..++++.+|+.++.++. +|+.. +.++ ++.+.++| +|+|.|+....... +...
T Consensus 191 ~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~ 270 (343)
T cd04734 191 MRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPP 270 (343)
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCc
Confidence 45668999999999865554 44431 2333 57788898 89999975321110 0111
Q ss_pred -chHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHHH
Q 021614 205 -ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 255 (310)
Q Consensus 205 -~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~~ 255 (310)
..+.....+++.+ ++||+++|+|++++++.++++.| ||+|++||+++..
T Consensus 271 ~~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~lad 321 (343)
T cd04734 271 GPFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIAD 321 (343)
T ss_pred chhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhC
Confidence 1245556677666 79999999999999999999976 9999999999863
No 76
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.38 E-value=1.5e-11 Score=115.02 Aligned_cols=100 Identities=32% Similarity=0.464 Sum_probs=79.5
Q ss_pred HHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecC--CCCCC--CCCcchHHHHHHHHHHhcCC-ceEEEecCC
Q 021614 155 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQL--DYVPATIMALEEVVKATQGR-IPVFLDGGV 229 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-ipvia~GGI 229 (310)
+.++.++. .+..++.+ +.++..++++.++|+|+|++.+. ||+.. +..++++..+.++++.+ + +|||+.|||
T Consensus 118 ~~i~~~~~-~g~~v~~~-v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGGI 193 (336)
T COG2070 118 EFVARLKA-AGIKVIHS-VITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGGI 193 (336)
T ss_pred HHHHHHHH-cCCeEEEE-eCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecCc
Confidence 55666655 45665543 46899999999999999998763 34321 23456788889999887 5 999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcHHHHHHhhh
Q 021614 230 RRGTDVFKALALGASGIFIGRPVVYSLAA 258 (310)
Q Consensus 230 ~~~~dv~k~l~~GAd~V~ig~~~l~~~~~ 258 (310)
.++.++..++++||++|++|+.|+....|
T Consensus 194 ~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea 222 (336)
T COG2070 194 ADGRGIAAALALGADGVQMGTRFLATKEA 222 (336)
T ss_pred cChHHHHHHHHhccHHHHhhhhhhccccc
Confidence 99999999999999999999999876444
No 77
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.35 E-value=7.7e-11 Score=108.83 Aligned_cols=183 Identities=15% Similarity=0.189 Sum_probs=118.8
Q ss_pred CcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHH-------cc-CCCceeEEEEecCChHHHHHHH
Q 021614 11 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------ST-GPGIRFFQLYVYKDRNVVAQLV 82 (310)
Q Consensus 11 ~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~-------~~-~~~~~~~ql~~~~d~~~~~~~i 82 (310)
.+||+.+||++. .. ...|+.+..+.|...+++.. ..+.+++. +. ...|..+++....+.+...+.+
T Consensus 2 ~yPIiqgpM~~v--s~---~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRV--SD---VAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCC--CC---cHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 589999999875 21 14789999999877666542 23444322 21 2235556664322223344566
Q ss_pred HHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHh
Q 021614 83 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 162 (310)
Q Consensus 83 ~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~ 162 (310)
+.+.+.+.+.+.++.+. |. + ++++++
T Consensus 76 ~vi~e~~v~~V~~~~G~--------------------------------------------------P~---~-~~~lk~ 101 (320)
T cd04743 76 AVVRAIKPTFALIAGGR--------------------------------------------------PD---Q-ARALEA 101 (320)
T ss_pred HHHHhcCCcEEEEcCCC--------------------------------------------------hH---H-HHHHHH
Confidence 66667777766543221 11 1 344443
Q ss_pred hCCCCEEEEecCCHHHHHHHHHcCCcEEEEecC--CCCCCCCCcchHHHHHHHHHHhc--------CCceEEEecCCCCH
Q 021614 163 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRG 232 (310)
Q Consensus 163 ~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~--------~~ipvia~GGI~~~ 232 (310)
.++.++. .+.|+.+++.+.++|+|+|++.++ ||+. +..+++..+.++...+. .++|||+.|||.++
T Consensus 102 -~Gi~v~~-~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dg 177 (320)
T cd04743 102 -IGISTYL-HVPSPGLLKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDE 177 (320)
T ss_pred -CCCEEEE-EeCCHHHHHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCH
Confidence 4666663 457899999999999999999874 3432 12234444555443331 26999999999999
Q ss_pred HHHHHHHHcCC--------CEEEEcHHHHHHhh
Q 021614 233 TDVFKALALGA--------SGIFIGRPVVYSLA 257 (310)
Q Consensus 233 ~dv~k~l~~GA--------d~V~ig~~~l~~~~ 257 (310)
..+..++++|| ++|+||+.|+....
T Consensus 178 r~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~E 210 (320)
T cd04743 178 RSAAMVSALAAPLAERGAKVGVLMGTAYLFTEE 210 (320)
T ss_pred HHHHHHHHcCCcccccccccEEEEccHHhcchh
Confidence 99999999998 89999999987543
No 78
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.34 E-value=1.3e-10 Score=109.33 Aligned_cols=105 Identities=22% Similarity=0.229 Sum_probs=79.2
Q ss_pred CCcccHHHHHHHHhhC--CCCEEEEec--------CCHHH----HHHHHHcCCcEEEEecCCCC--CC-CCCc-chHHHH
Q 021614 149 DRSLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QL-DYVP-ATIMAL 210 (310)
Q Consensus 149 ~~~~~~~~i~~ir~~~--~~pv~vK~~--------~~~~~----a~~~~~aGad~I~v~~~gg~--~~-~~~~-~~~~~l 210 (310)
.+.+..++++.+|+.+ +.||.+|+. .+.++ ++.+.+.|+|+|.++.++.+ +. ...+ .....+
T Consensus 203 r~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 282 (336)
T cd02932 203 RMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFA 282 (336)
T ss_pred HhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHH
Confidence 4556789999999998 789999965 23443 56778899999998754321 11 1111 123455
Q ss_pred HHHHHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHHH
Q 021614 211 EEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 255 (310)
Q Consensus 211 ~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~~ 255 (310)
.++++.+ ++||+++|+|.+++++.++++.| ||.|++||+++..
T Consensus 283 ~~ir~~~--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~d 326 (336)
T cd02932 283 ERIRQEA--GIPVIAVGLITDPEQAEAILESGRADLVALGRELLRN 326 (336)
T ss_pred HHHHhhC--CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhC
Confidence 6666665 79999999999999999999998 9999999999863
No 79
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.33 E-value=1.3e-10 Score=99.38 Aligned_cols=185 Identities=23% Similarity=0.241 Sum_probs=118.2
Q ss_pred eeeccccccccCCCHHHHHHHHHHHHcCCeeEeC-CCCC-----CC-----HHHHHccCCCceeEEEEecCChHHHHHHH
Q 021614 14 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST-----SS-----VEEVASTGPGIRFFQLYVYKDRNVVAQLV 82 (310)
Q Consensus 14 i~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~-~~~~-----~~-----~e~i~~~~~~~~~~ql~~~~d~~~~~~~i 82 (310)
+++++|+++. .+....+++.+.+.|+.+... +... .. ++.+......+.++|++.....+......
T Consensus 1 ~~~~~~~~~~---~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGP---SGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCc---hHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 4678887652 133467888899988755432 2211 11 22333333346788998443333333334
Q ss_pred HHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHh
Q 021614 83 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 162 (310)
Q Consensus 83 ~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~ 162 (310)
+++.+.|++.+.++..++.. +....+.++++++
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~-----------------------------------------------~~~~~~~~~~i~~ 110 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL-----------------------------------------------AREDLELIRELRE 110 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH-----------------------------------------------HHHHHHHHHHHHH
Confidence 67888999999998775331 1122467888888
Q ss_pred hC-CCCEEEEecCCHHHHHH-HHHcCCcEEEEecCCCCCCCCCcch--HHHHHHHHHHhcCCceEEEecCCCCHHHHHHH
Q 021614 163 IT-KLPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQLDYVPAT--IMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 238 (310)
Q Consensus 163 ~~-~~pv~vK~~~~~~~a~~-~~~aGad~I~v~~~gg~~~~~~~~~--~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~ 238 (310)
.+ +.|+++|.....+.... +.+.|+|+|.++++...+....... ...+..+.+. .++||+++|||.+++++.++
T Consensus 111 ~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pi~~~GGi~~~~~~~~~ 188 (200)
T cd04722 111 AVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG--SKVPVIAGGGINDPEDAAEA 188 (200)
T ss_pred hcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc--CCCCEEEECCCCCHHHHHHH
Confidence 87 89999998644322222 6889999999987654322111111 1223333332 37999999999999999999
Q ss_pred HHcCCCEEEEcH
Q 021614 239 LALGASGIFIGR 250 (310)
Q Consensus 239 l~~GAd~V~ig~ 250 (310)
+.+|||+|++||
T Consensus 189 ~~~Gad~v~vgs 200 (200)
T cd04722 189 LALGADGVIVGS 200 (200)
T ss_pred HHhCCCEEEecC
Confidence 999999999996
No 80
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.32 E-value=2.4e-10 Score=109.66 Aligned_cols=219 Identities=20% Similarity=0.203 Sum_probs=128.8
Q ss_pred cCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHH-------ccCCC-c-eeEEEEecC-ChHHHH
Q 021614 10 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGPG-I-RFFQLYVYK-DRNVVA 79 (310)
Q Consensus 10 ~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~-------~~~~~-~-~~~ql~~~~-d~~~~~ 79 (310)
+..|++.+||+++ .+ ...|+.+..++|....++... .+++++. +..+. + ..++|+... +++.-.
T Consensus 17 iryPiiqgpMa~G-iS----s~eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~ 90 (444)
T TIGR02814 17 VRYAYVAGAMANG-IA----SAELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSPSDPALEW 90 (444)
T ss_pred CCCcEECccccCC-CC----CHHHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccCCCcccHH
Confidence 5789999999843 23 448999999999888887644 4555443 21222 4 777887543 344344
Q ss_pred HHHHHHHHcCCcEEEEe--eC-CCCCCcchHHhhhcc--CCCCcccccccccccccccccccchh-hHHHhhhccCCccc
Q 021614 80 QLVRRAERAGFKAIALT--VD-TPRLGRREADIKNRF--TLPPFLTLKNFQGLDLGKMDEANDSG-LAAYVAGQIDRSLS 153 (310)
Q Consensus 80 ~~i~~~~~~G~~~i~i~--~~-~p~~~~r~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 153 (310)
+.++.+.+.|++.+... ++ +|.. .+.+. .++ .....+..+. ..+.+-.... +...+++ ..
T Consensus 91 ~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~--~G~~~~~~g~~~~~~------~ViakVsr~~vAs~f~~p-----~p 156 (444)
T TIGR02814 91 GLVDLLLRHGVRIVEASAFMQLTPAL-VRYRA--KGLHRDADGRVVIRN------RLIAKVSRPEVAEAFMSP-----AP 156 (444)
T ss_pred HHHHHHHHcCCCEEEeccccCCCcch-hhhhh--ccccccccccccccc------eEEEecCCHHHHHHhcCC-----Cc
Confidence 56677778999887764 22 2221 11111 000 0000000000 0000000111 1112221 12
Q ss_pred HHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcC-CcEEEEec-CCCCCCCCCcchHHHHHHHH---HHh------cCCce
Q 021614 154 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSN-HGARQLDYVPATIMALEEVV---KAT------QGRIP 222 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aG-ad~I~v~~-~gg~~~~~~~~~~~~l~~i~---~~~------~~~ip 222 (310)
-+.++++.+. +..|+++|+.+.+.| +|.|++.. .||+. +..++...+..+. +.+ ..++|
T Consensus 157 ~~~v~~L~~~--------G~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y~~~Vp 226 (444)
T TIGR02814 157 AHILQKLLAE--------GRITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGYRKPIR 226 (444)
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccCCCCce
Confidence 3567777654 334999999999999 49898753 23432 1224455555553 333 12689
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhh
Q 021614 223 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 258 (310)
Q Consensus 223 via~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~ 258 (310)
|++.|||.++.++..++++|||+|++||.|+....+
T Consensus 227 ViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Es 262 (444)
T TIGR02814 227 VGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEA 262 (444)
T ss_pred EEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccc
Confidence 999999999999999999999999999999875433
No 81
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.31 E-value=1.3e-10 Score=101.70 Aligned_cols=167 Identities=19% Similarity=0.205 Sum_probs=122.1
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
..+.+...+.++.+.+.|++.+++++..|......+.++.++..+..++.+++... ++++.....++...++|..|
T Consensus 18 ~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~--~~~~~a~~aGA~fivsp~~~-- 93 (206)
T PRK09140 18 GITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSP--EQVDRLADAGGRLIVTPNTD-- 93 (206)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCH--HHHHHHHHcCCCEEECCCCC--
Confidence 67889999999999999999999999998765566777777754444555555532 23333334555566665444
Q ss_pred ccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCC
Q 021614 152 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 231 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (310)
.+.+ +.+...+.+++.. +.|++++..+.+.|+|+|.++... ....+.+..++..++.++|+++.||| +
T Consensus 94 --~~v~-~~~~~~~~~~~~G-~~t~~E~~~A~~~Gad~vk~Fpa~-------~~G~~~l~~l~~~~~~~ipvvaiGGI-~ 161 (206)
T PRK09140 94 --PEVI-RRAVALGMVVMPG-VATPTEAFAALRAGAQALKLFPAS-------QLGPAGIKALRAVLPPDVPVFAVGGV-T 161 (206)
T ss_pred --HHHH-HHHHHCCCcEEcc-cCCHHHHHHHHHcCCCEEEECCCC-------CCCHHHHHHHHhhcCCCCeEEEECCC-C
Confidence 3444 4445567777764 789999999999999999985421 12245566665544336999999999 6
Q ss_pred HHHHHHHHHcCCCEEEEcHHHHH
Q 021614 232 GTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 232 ~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+++.+++++||++|.+++.++.
T Consensus 162 ~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 162 PENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred HHHHHHHHHCCCeEEEEehHhcc
Confidence 89999999999999999999875
No 82
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=99.31 E-value=2.6e-10 Score=103.06 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=109.1
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
+.|.+.+.++++.+.+.|++.|++.+. . +.|. .|.|.++.+ ...++..+.+.+
T Consensus 20 ~P~~~~~~~~~~~l~~~Gad~iElGiP--f------------sDP~---------aDGpvIq~a----~~~al~~G~~~~ 72 (256)
T TIGR00262 20 DPTLETSLEIIKTLIEAGADALELGVP--F------------SDPL---------ADGPTIQAA----DLRALRAGMTPE 72 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCC--C------------CCCC---------CcCHHHHHH----HHHHHHcCCCHH
Confidence 357788999999999999999988543 3 2231 133344432 344555555666
Q ss_pred ccHHHHHHHHhh-CCCCEEEEecCCH-------HHHHHHHHcCCcEEEEec---------------CCC---------CC
Q 021614 152 LSWKDVKWLQTI-TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ 199 (310)
Q Consensus 152 ~~~~~i~~ir~~-~~~pv~vK~~~~~-------~~a~~~~~aGad~I~v~~---------------~gg---------~~ 199 (310)
..++.++++|+. .++|++.-+..++ +.++.+.++|+|+|.+.- +|- +.
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~ 152 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNAD 152 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 678999999987 7899876555554 357889999999998752 110 00
Q ss_pred -------------------CC--CC------cchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHH
Q 021614 200 -------------------LD--YV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 200 -------------------~~--~~------~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
.. .| +...+.+.++++.. +.||++.|||+|++++.++...|||+|.+||++
T Consensus 153 ~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 153 DERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 00 01 12334455555543 679999999999999999999999999999999
Q ss_pred HHHhh
Q 021614 253 VYSLA 257 (310)
Q Consensus 253 l~~~~ 257 (310)
+..+.
T Consensus 231 v~~~~ 235 (256)
T TIGR00262 231 VKIIE 235 (256)
T ss_pred HHHHH
Confidence 87553
No 83
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=99.30 E-value=3.9e-10 Score=102.11 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=107.5
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
+.|.+.+.++++.+.+.|++.|++.+. . +.|. .|.|.++.+ ...++..+.+.+
T Consensus 25 ~P~~~~~~~~~~~l~~~Gad~iElGiP--f------------SDP~---------aDGpvIq~a----~~rAL~~g~~~~ 77 (263)
T CHL00200 25 DPDIVITKKALKILDKKGADIIELGIP--Y------------SDPL---------ADGPIIQEA----SNRALKQGINLN 77 (263)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCC--C------------CCCC---------ccCHHHHHH----HHHHHHcCCCHH
Confidence 457789999999999999999998543 2 2231 133344432 344555555666
Q ss_pred ccHHHHHHHHhhCCCCEEEEecCCH-------HHHHHHHHcCCcEEEEec---------------CCC---------CC-
Q 021614 152 LSWKDVKWLQTITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ- 199 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK~~~~~-------~~a~~~~~aGad~I~v~~---------------~gg---------~~- 199 (310)
..++.++++|+..++|+++-...++ ...+.+.++|+|++.+.. +|- +.
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~ 157 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSK 157 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 7789999999888899876554332 357889999999998853 010 00
Q ss_pred ------------------CC--CCc-----ch-HHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 200 ------------------LD--YVP-----AT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 200 ------------------~~--~~~-----~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
.. .|. .. .+.+.++++. .+.|+...+||++++++.++...|||+|.+||+++
T Consensus 158 eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~--t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 158 SRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKM--TNKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred HHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHh--cCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 00 011 11 2223444443 27999999999999999999999999999999998
Q ss_pred HHhh
Q 021614 254 YSLA 257 (310)
Q Consensus 254 ~~~~ 257 (310)
..+.
T Consensus 236 ~~i~ 239 (263)
T CHL00200 236 QILL 239 (263)
T ss_pred HHHH
Confidence 7553
No 84
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=99.26 E-value=2.3e-10 Score=99.54 Aligned_cols=169 Identities=16% Similarity=0.142 Sum_probs=125.4
Q ss_pred EEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhcc
Q 021614 69 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQI 148 (310)
Q Consensus 69 l~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (310)
+.-..+.+...+.++.+.+.|++.++||+++|....-.+.++.+|. .-.++.+++.. ..+++.....|+.+.++|..
T Consensus 13 Vlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~--~~~a~~a~~aGA~FivsP~~ 89 (204)
T TIGR01182 13 VIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVP-DALIGAGTVLN--PEQLRQAVDAGAQFIVSPGL 89 (204)
T ss_pred EEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC-CCEEEEEeCCC--HHHHHHHHHcCCCEEECCCC
Confidence 3336788999999999999999999999999887666677877763 12456666553 33444555567777777655
Q ss_pred CCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecC
Q 021614 149 DRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 228 (310)
Q Consensus 149 ~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (310)
+ .+.++. +++.++|++- +++|+.++..+.++|+|.|.++..+- .+++..+..| +. .-..+|++.+||
T Consensus 90 ~----~~v~~~-~~~~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~~---~GG~~yikal---~~-plp~i~~~ptGG 156 (204)
T TIGR01182 90 T----PELAKH-AQDHGIPIIP-GVATPSEIMLALELGITALKLFPAEV---SGGVKMLKAL---AG-PFPQVRFCPTGG 156 (204)
T ss_pred C----HHHHHH-HHHcCCcEEC-CCCCHHHHHHHHHCCCCEEEECCchh---cCCHHHHHHH---hc-cCCCCcEEecCC
Confidence 4 355555 4556888774 88999999999999999999987421 1234444443 22 224799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 229 VRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 229 I~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
|. .+++.+++++|+.+|++|+.++.
T Consensus 157 V~-~~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 157 IN-LANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred CC-HHHHHHHHhCCCEEEEEChhhcC
Confidence 98 69999999999999999998864
No 85
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.25 E-value=8.3e-10 Score=104.40 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=74.6
Q ss_pred CcccHHHHHHHHhhC--CCCEEEEecC------------CHHH----HHHHHHcCCcEEEEecCCC-CCCCCCcchHHHH
Q 021614 150 RSLSWKDVKWLQTIT--KLPILVKGVL------------TAED----ARIAVQAGAAGIIVSNHGA-RQLDYVPATIMAL 210 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~--~~pv~vK~~~------------~~~~----a~~~~~aGad~I~v~~~gg-~~~~~~~~~~~~l 210 (310)
..+..|+|+.||+.+ +.||.+|+.. +.++ ++.+.++|+|+|.++...- .+...+ ..+...
T Consensus 194 ~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~-~~~~~~ 272 (361)
T cd04747 194 SRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEG-SELNLA 272 (361)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCc-cchhHH
Confidence 345679999999987 5899999862 2333 4567889999999876321 111111 123334
Q ss_pred HHHHHHhcCCceEEEecCC------------------CCHHHHHHHHHcC-CCEEEEcHHHHHH
Q 021614 211 EEVVKATQGRIPVFLDGGV------------------RRGTDVFKALALG-ASGIFIGRPVVYS 255 (310)
Q Consensus 211 ~~i~~~~~~~ipvia~GGI------------------~~~~dv~k~l~~G-Ad~V~ig~~~l~~ 255 (310)
..+++.+ ++||+++|+| ++++++.++++.| ||+|++||+++..
T Consensus 273 ~~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iad 334 (361)
T cd04747 273 GWTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSD 334 (361)
T ss_pred HHHHHHc--CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhC
Confidence 4556555 7999999999 5999999999977 9999999999863
No 86
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.24 E-value=2e-10 Score=101.12 Aligned_cols=166 Identities=15% Similarity=0.141 Sum_probs=123.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhcc--CCCC-cccccccccccccccccccchhhHHHhhhcc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF--TLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQI 148 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~--~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (310)
..+.+...++++.+.+.|++.++||+++|......++++..| ..|. .++.+++.. ..+++.....|+.+.++|..
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~--~e~a~~a~~aGA~FiVsP~~ 100 (222)
T PRK07114 23 HADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVD--AATAALYIQLGANFIVTPLF 100 (222)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcC--HHHHHHHHHcCCCEEECCCC
Confidence 678999999999999999999999999999866667776444 2343 345555553 33445555677777877655
Q ss_pred CCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecC
Q 021614 149 DRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 228 (310)
Q Consensus 149 ~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (310)
+ -+.++.. ...++|++ -+++|+.++..+.++|+|.|.++..+ . .++..+..| . ..-..++++.+||
T Consensus 101 ~----~~v~~~~-~~~~i~~i-PG~~TpsEi~~A~~~Ga~~vKlFPA~--~--~G~~~ikal---~-~p~p~i~~~ptGG 166 (222)
T PRK07114 101 N----PDIAKVC-NRRKVPYS-PGCGSLSEIGYAEELGCEIVKLFPGS--V--YGPGFVKAI---K-GPMPWTKIMPTGG 166 (222)
T ss_pred C----HHHHHHH-HHcCCCEe-CCCCCHHHHHHHHHCCCCEEEECccc--c--cCHHHHHHH---h-ccCCCCeEEeCCC
Confidence 5 3455554 45678877 67899999999999999999998742 1 234333333 2 2224799999999
Q ss_pred CCC-HHHHHHHHHcCCCEEEEcHHHH
Q 021614 229 VRR-GTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 229 I~~-~~dv~k~l~~GAd~V~ig~~~l 253 (310)
|.- .+++.+++.+|+.+|++|+.++
T Consensus 167 V~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 167 VEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred CCcchhcHHHHHhCCCEEEEEChhhc
Confidence 994 4899999999999999999876
No 87
>PLN02591 tryptophan synthase
Probab=99.24 E-value=1.1e-09 Score=98.32 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=107.6
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
+.|.+.+.++++.+.+.|++.|++.+. . +.|. .|.+.++.+ ...++..+.+.+
T Consensus 12 ~P~~e~~~~~~~~l~~~Gad~iElGiP--f------------SDP~---------aDGpvIq~a----~~rAL~~G~~~~ 64 (250)
T PLN02591 12 DPDLDTTAEALRLLDACGADVIELGVP--Y------------SDPL---------ADGPVIQAA----ATRALEKGTTLD 64 (250)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCC--C------------CCCc---------ccCHHHHHH----HHHHHHcCCCHH
Confidence 457888999999999999999998543 2 2231 133334432 344555555666
Q ss_pred ccHHHHHHHHhhCCCCEEEEecCCH-------HHHHHHHHcCCcEEEEec---------------CCC---------CC-
Q 021614 152 LSWKDVKWLQTITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ- 199 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK~~~~~-------~~a~~~~~aGad~I~v~~---------------~gg---------~~- 199 (310)
..++.++++|+..++|+++-...++ ...+.+.++|+|++.+-. +|- +.
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~ 144 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPT 144 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCH
Confidence 7789999999888899876554332 347888899999988742 000 00
Q ss_pred ---------------------CCC---C-cchH-HHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 200 ---------------------LDY---V-PATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 200 ---------------------~~~---~-~~~~-~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
..+ . +... +.+.++++. .++||+...||++++|+.+++..|||+|.+||+++
T Consensus 145 ~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~--~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 145 ERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEV--TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred HHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc--CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 001 1 2222 234555553 38999999999999999999999999999999998
Q ss_pred HHhh
Q 021614 254 YSLA 257 (310)
Q Consensus 254 ~~~~ 257 (310)
..+.
T Consensus 223 k~i~ 226 (250)
T PLN02591 223 KALG 226 (250)
T ss_pred Hhhh
Confidence 7553
No 88
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=99.21 E-value=3.2e-09 Score=95.09 Aligned_cols=164 Identities=20% Similarity=0.269 Sum_probs=113.3
Q ss_pred ceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHH
Q 021614 64 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 143 (310)
Q Consensus 64 ~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (310)
..|+.+. +.+.+.+.++++.+.+.|+++|++.+. . +.|. .|.|.++. .+.++
T Consensus 20 i~yit~G-dP~~e~s~e~i~~L~~~GaD~iELGvP--f------------SDPv---------ADGP~Iq~----A~~rA 71 (265)
T COG0159 20 IPYVTAG-DPDLETSLEIIKTLVEAGADILELGVP--F------------SDPV---------ADGPTIQA----AHLRA 71 (265)
T ss_pred EEEEeCC-CCCHHHHHHHHHHHHhCCCCEEEecCC--C------------CCcC---------ccCHHHHH----HHHHH
Confidence 4455554 567899999999999999999998543 3 2231 13344443 23456
Q ss_pred hhhccCCcccHHHHHHHHhh-CCCCEEEEecCCH-------HHHHHHHHcCCcEEEEec---------------CCC---
Q 021614 144 VAGQIDRSLSWKDVKWLQTI-TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA--- 197 (310)
Q Consensus 144 ~~~~~~~~~~~~~i~~ir~~-~~~pv~vK~~~~~-------~~a~~~~~aGad~I~v~~---------------~gg--- 197 (310)
+......+..++.++.+|+. .++|+++-...++ ...+.+.++|+|++.+-- +|-
T Consensus 72 L~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I 151 (265)
T COG0159 72 LAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPI 151 (265)
T ss_pred HHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEE
Confidence 65556667789999999966 6899998776443 347889999999998742 110
Q ss_pred ------CC----------------------CCCC--c---chHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCC
Q 021614 198 ------RQ----------------------LDYV--P---ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 244 (310)
Q Consensus 198 ------~~----------------------~~~~--~---~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd 244 (310)
+. ..+. + ...+.+.++++.. ++|+...-||++++++.++... ||
T Consensus 152 ~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-AD 228 (265)
T COG0159 152 FLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-AD 228 (265)
T ss_pred EEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CC
Confidence 00 0011 1 1123344444443 8999999999999999999999 99
Q ss_pred EEEEcHHHHHHhhh
Q 021614 245 GIFIGRPVVYSLAA 258 (310)
Q Consensus 245 ~V~ig~~~l~~~~~ 258 (310)
+|.+||+++..+..
T Consensus 229 GVIVGSAiV~~i~~ 242 (265)
T COG0159 229 GVIVGSAIVKIIEE 242 (265)
T ss_pred eEEEcHHHHHHHHh
Confidence 99999999986543
No 89
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.20 E-value=1.3e-09 Score=112.87 Aligned_cols=141 Identities=21% Similarity=0.226 Sum_probs=96.6
Q ss_pred HHHHHHHHcCCcEEEEeeC---------CCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCC
Q 021614 80 QLVRRAERAGFKAIALTVD---------TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 150 (310)
Q Consensus 80 ~~i~~~~~~G~~~i~i~~~---------~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (310)
+.+++++++|+|+|+||.. ||...+|..+. | +.+- ...
T Consensus 555 ~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~y-----------------------------G-Gsle---nR~ 601 (765)
T PRK08255 555 AAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEY-----------------------------G-GSLE---NRL 601 (765)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCC-----------------------------C-CCHH---HHh
Confidence 4455677899999999988 66654432110 0 1110 123
Q ss_pred cccHHHHHHHHhhC--CCCEEEEecC--------CHH----HHHHHHHcCCcEEEEecCCCC-C-C-CCCcc-hHHHHHH
Q 021614 151 SLSWKDVKWLQTIT--KLPILVKGVL--------TAE----DARIAVQAGAAGIIVSNHGAR-Q-L-DYVPA-TIMALEE 212 (310)
Q Consensus 151 ~~~~~~i~~ir~~~--~~pv~vK~~~--------~~~----~a~~~~~aGad~I~v~~~gg~-~-~-~~~~~-~~~~l~~ 212 (310)
.+..|+++.||+.+ +.||.+|+.. +.+ .++.+.++|+|+|.|+..... . . ..++. ......+
T Consensus 602 r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 681 (765)
T PRK08255 602 RYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADR 681 (765)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHH
Confidence 45678999999987 5899999873 233 467888999999999752211 1 0 01111 1223355
Q ss_pred HHHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHHH
Q 021614 213 VVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 255 (310)
Q Consensus 213 i~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~~ 255 (310)
+++.+ ++||+++|+|++++++.++++.| ||+|++||+++..
T Consensus 682 ik~~~--~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~d 723 (765)
T PRK08255 682 IRNEA--GIATIAVGAISEADHVNSIIAAGRADLCALARPHLAD 723 (765)
T ss_pred HHHHc--CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhC
Confidence 66655 79999999999999999999976 9999999999863
No 90
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.20 E-value=3.3e-09 Score=95.86 Aligned_cols=171 Identities=19% Similarity=0.237 Sum_probs=110.7
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
+.|.+.+.++++.+.+.|++.|++.+. . +.|. .|.+.++.+ ...++..+.+.+
T Consensus 22 ~P~~~~~~~~~~~l~~~Gad~iElGiP--f------------SDP~---------aDGpvIq~a----~~~AL~~G~~~~ 74 (258)
T PRK13111 22 DPDLETSLEIIKALVEAGADIIELGIP--F------------SDPV---------ADGPVIQAA----SLRALAAGVTLA 74 (258)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCC--C------------CCCc---------ccCHHHHHH----HHHHHHcCCCHH
Confidence 457889999999999999999998543 2 2231 123333332 334554444555
Q ss_pred ccHHHHHHHH-hhCCCCEEEEecCC------H-HHHHHHHHcCCcEEEEec---------------CCC---------CC
Q 021614 152 LSWKDVKWLQ-TITKLPILVKGVLT------A-EDARIAVQAGAAGIIVSN---------------HGA---------RQ 199 (310)
Q Consensus 152 ~~~~~i~~ir-~~~~~pv~vK~~~~------~-~~a~~~~~aGad~I~v~~---------------~gg---------~~ 199 (310)
..++.++++| +..+.|+++-...+ . ...+.+.++|+|++.+-. +|- +.
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~ 154 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTT 154 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 6688899999 55689987665433 2 347888899999988742 010 00
Q ss_pred -------------------C---CC----Ccch-HHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHH
Q 021614 200 -------------------L---DY----VPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 200 -------------------~---~~----~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
. .+ .+.. .+.+.++++.. ++|++..+||++++|+.+++.. ||+|.+|+++
T Consensus 155 ~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSai 231 (258)
T PRK13111 155 DERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSAL 231 (258)
T ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHH
Confidence 0 00 1122 33556666543 7999999999999999998875 9999999999
Q ss_pred HHHhhh--ccHHHHHHHHHHHH
Q 021614 253 VYSLAA--EGEKGVRRVLEMLR 272 (310)
Q Consensus 253 l~~~~~--~G~~~v~~~l~~l~ 272 (310)
+..+.. ++.+.+.++++.++
T Consensus 232 v~~~~~~~~~~~~~~~~~~~l~ 253 (258)
T PRK13111 232 VKIIEENPEALEALAAFVKELK 253 (258)
T ss_pred HHHHHhcchHHHHHHHHHHHHH
Confidence 886543 23334444444433
No 91
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.20 E-value=9.3e-10 Score=104.16 Aligned_cols=104 Identities=20% Similarity=0.141 Sum_probs=74.2
Q ss_pred CcccHHHHHHHHhhCC--CCEEEEec--------CCHH----HHHHHHHcCCcEEEEecC--CCCCC----CCCcch-HH
Q 021614 150 RSLSWKDVKWLQTITK--LPILVKGV--------LTAE----DARIAVQAGAAGIIVSNH--GARQL----DYVPAT-IM 208 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~~--~pv~vK~~--------~~~~----~a~~~~~aGad~I~v~~~--gg~~~----~~~~~~-~~ 208 (310)
..+..++++.+|+.++ .+|.+|+. .+.+ .++.+.++|+|+|.++.. ..+.. ...... ..
T Consensus 187 ~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~ 266 (353)
T cd02930 187 MRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAW 266 (353)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHH
Confidence 4456789999999874 56666664 2333 357888999999999742 11110 011111 23
Q ss_pred HHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHHH
Q 021614 209 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 255 (310)
Q Consensus 209 ~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~~ 255 (310)
...++++.+ ++||+++|++++++++.++++.| +|.|++||+++..
T Consensus 267 ~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~d 312 (353)
T cd02930 267 ATAKLKRAV--DIPVIASNRINTPEVAERLLADGDADMVSMARPFLAD 312 (353)
T ss_pred HHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHC
Confidence 345666665 79999999999999999999987 9999999999863
No 92
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.18 E-value=2.3e-10 Score=108.23 Aligned_cols=106 Identities=19% Similarity=0.170 Sum_probs=75.6
Q ss_pred CcccHHHHHHHHhhCC------CCEEEEecC--------CHH----HHHHHHHcCCcEEEEecCCCCCC--CCCcchHHH
Q 021614 150 RSLSWKDVKWLQTITK------LPILVKGVL--------TAE----DARIAVQAGAAGIIVSNHGARQL--DYVPATIMA 209 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~~------~pv~vK~~~--------~~~----~a~~~~~aGad~I~v~~~gg~~~--~~~~~~~~~ 209 (310)
..+..|+++.+|+.++ .||.+|+.. +.+ .++.+.++|+|+|.|+..+.+.. .........
T Consensus 194 ~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~ 273 (353)
T cd04735 194 MRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTI 273 (353)
T ss_pred HHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHH
Confidence 4456799999999874 455555542 233 35788899999999986432211 111112344
Q ss_pred HHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 210 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 210 l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
+..+++.+..++||+++|||++++++.++++.|||+|++||+++..
T Consensus 274 ~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~liad 319 (353)
T cd04735 274 MELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLVD 319 (353)
T ss_pred HHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHhC
Confidence 4555555444799999999999999999999999999999999863
No 93
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.17 E-value=7.2e-09 Score=91.72 Aligned_cols=97 Identities=23% Similarity=0.261 Sum_probs=74.4
Q ss_pred HHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCC--CCCcchHHHHHHHHHHhcCCceEEEecCCCCH
Q 021614 155 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRG 232 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (310)
+.++.+++..++|+++ .+.+.++++.+.++|+|+|.+++++.+.. ......+..+.++++.+ ++||++.|||+++
T Consensus 109 ~~i~~~~~~~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~ 185 (221)
T PRK01130 109 ELVKRIKEYPGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTP 185 (221)
T ss_pred HHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCH
Confidence 5566666645677764 55688999999999999998754432211 12234567777777766 7999999999999
Q ss_pred HHHHHHHHcCCCEEEEcHHHHH
Q 021614 233 TDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 233 ~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+|+.+++++|||+|++|+.++.
T Consensus 186 ~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 186 EQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred HHHHHHHHCCCCEEEEchHhcC
Confidence 9999999999999999999764
No 94
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.17 E-value=8.9e-10 Score=103.57 Aligned_cols=102 Identities=18% Similarity=0.089 Sum_probs=77.1
Q ss_pred CcccHHHHHHHHhhCCC-CEEEEecC-----------CHH----HHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHH
Q 021614 150 RSLSWKDVKWLQTITKL-PILVKGVL-----------TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV 213 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~~~-pv~vK~~~-----------~~~----~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i 213 (310)
..+..++++.+|+.++. ||.+|+.. +.+ .++.+.++|+|+|.|+... .........+....++
T Consensus 202 ~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~-~~~~~~~~~~~~~~~i 280 (338)
T cd02933 202 ARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPR-VAGNPEDQPPDFLDFL 280 (338)
T ss_pred hhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCC-CCCcccccchHHHHHH
Confidence 34567999999998744 89999852 333 3678889999999996532 1111122345566777
Q ss_pred HHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHHH
Q 021614 214 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 255 (310)
Q Consensus 214 ~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~~ 255 (310)
++.+ ++||+++|||+ ++++.++++.| ||+|++||+++..
T Consensus 281 k~~~--~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~lad 320 (338)
T cd02933 281 RKAF--KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIAN 320 (338)
T ss_pred HHHc--CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhC
Confidence 7776 79999999997 99999999987 9999999999863
No 95
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.16 E-value=7.7e-10 Score=104.11 Aligned_cols=141 Identities=23% Similarity=0.337 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCCcEEEEeeCC---------CCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccC
Q 021614 79 AQLVRRAERAGFKAIALTVDT---------PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 149 (310)
Q Consensus 79 ~~~i~~~~~~G~~~i~i~~~~---------p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (310)
.+..++++++|+|+|+||..| |...+|..+. | +.+ . ..
T Consensus 152 ~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~y-----------------------------G-Gsl-e--nR 198 (338)
T cd04733 152 AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEY-----------------------------G-GSL-E--NR 198 (338)
T ss_pred HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccC-----------------------------C-CCH-H--HH
Confidence 345567788999999999886 4433332110 1 111 1 13
Q ss_pred CcccHHHHHHHHhhC--CCCEEEEec--------CCHHH----HHHHHHcCCcEEEEecCCCCCCCCC---------cc-
Q 021614 150 RSLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---------PA- 205 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~--~~pv~vK~~--------~~~~~----a~~~~~aGad~I~v~~~gg~~~~~~---------~~- 205 (310)
..+..++|+.||+.+ +.||.+|.. .+.++ ++.+.++|+|+|.|+.....+.... +.
T Consensus 199 ~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~ 278 (338)
T cd04733 199 ARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREA 278 (338)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccch
Confidence 456789999999987 589999985 34443 5788899999999876431111100 00
Q ss_pred -hHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHH
Q 021614 206 -TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 254 (310)
Q Consensus 206 -~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~ 254 (310)
.+....++++.+ ++||+++|+|.+.+++.++++.| ||.|++||+++.
T Consensus 279 ~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 279 YFLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred hhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 134445666666 79999999999999999999987 999999999986
No 96
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.16 E-value=3.6e-09 Score=100.73 Aligned_cols=103 Identities=11% Similarity=0.030 Sum_probs=70.6
Q ss_pred CcccHHHHHHHHhhCC--CCEEEEecC----------CHHH----HHHHHHcCCcEEEEecCCC----CCCCCCc--chH
Q 021614 150 RSLSWKDVKWLQTITK--LPILVKGVL----------TAED----ARIAVQAGAAGIIVSNHGA----RQLDYVP--ATI 207 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~~--~pv~vK~~~----------~~~~----a~~~~~aGad~I~v~~~gg----~~~~~~~--~~~ 207 (310)
..+..|+++.||+.++ .||.+|+.. +.++ ++.+.+ .+|++.++...- ......+ ..+
T Consensus 200 ~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~~ 278 (370)
T cd02929 200 ARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQE 278 (370)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCccccH
Confidence 4566899999999984 566666541 2333 344444 489998875311 0000001 123
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHHH
Q 021614 208 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 255 (310)
Q Consensus 208 ~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~~ 255 (310)
....++++.+ ++||+++|+|++++++.++++.| ||+|++||+++..
T Consensus 279 ~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~lad 325 (370)
T cd02929 279 PYIKFVKQVT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIAD 325 (370)
T ss_pred HHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhC
Confidence 4445666665 79999999999999999999987 9999999999863
No 97
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=5.1e-10 Score=96.67 Aligned_cols=166 Identities=19% Similarity=0.204 Sum_probs=125.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
..+.|....+++.+.+.|+++|+||+.+|....-.+.++..+. --.++.+++. +..++++.+..|++..++|..+
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL--~~~q~~~a~~aGa~fiVsP~~~-- 95 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTVL--NPEQARQAIAAGAQFIVSPGLN-- 95 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEcccccc--CHHHHHHHHHcCCCEEECCCCC--
Confidence 5688999999999999999999999999999888888888875 1134556555 3445556666788888877665
Q ss_pred ccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCC
Q 021614 152 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 231 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (310)
..+-+.+...++|++ -+++|+.++..+.++|++.+.++.... .+++.....+ +....+++++.+|||+
T Consensus 96 ---~ev~~~a~~~~ip~~-PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~~~~ka~----~gP~~~v~~~pTGGVs- 163 (211)
T COG0800 96 ---PEVAKAANRYGIPYI-PGVATPTEIMAALELGASALKFFPAEV---VGGPAMLKAL----AGPFPQVRFCPTGGVS- 163 (211)
T ss_pred ---HHHHHHHHhCCCccc-CCCCCHHHHHHHHHcChhheeecCccc---cCcHHHHHHH----cCCCCCCeEeecCCCC-
Confidence 334445555688877 678999999999999999999987422 1233222222 2223479999999998
Q ss_pred HHHHHHHHHcCCCEEEEcHHHHH
Q 021614 232 GTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 232 ~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
..++.+++++|+.+|++|+.+..
T Consensus 164 ~~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 164 LDNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred HHHHHHHHhCCceEEecCccccC
Confidence 67999999999999999997764
No 98
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.15 E-value=1.7e-09 Score=93.83 Aligned_cols=164 Identities=16% Similarity=0.113 Sum_probs=121.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCC-cccccccccccccccccccchhhHHHhhhccCC
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 150 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (310)
..+.+...++++.+.+.|++.++||+++|..-.-.+.++.++ |. .++.+++.. ..+++..+..|++++++|..+
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~--~~~~vGAGTVl~--~e~a~~ai~aGA~FivSP~~~- 86 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV--EEAIVGAGTILN--AKQFEDAAKAGSRFIVSPGTT- 86 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC--CCCEEeeEeCcC--HHHHHHHHHcCCCEEECCCCC-
Confidence 678899999999999999999999999998766667777776 33 456666553 334555556777778776554
Q ss_pred cccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCC
Q 021614 151 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 230 (310)
Q Consensus 151 ~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 230 (310)
-++++.. ++.++|++ -+++|+.++..+.++|+|.|.++..+- -+++..+..+ +.-+ ..+|++.+|||.
T Consensus 87 ---~~vi~~a-~~~~i~~i-PG~~TptEi~~A~~~Ga~~vK~FPa~~---~GG~~yikal---~~pl-p~~~l~ptGGV~ 154 (201)
T PRK06015 87 ---QELLAAA-NDSDVPLL-PGAATPSEVMALREEGYTVLKFFPAEQ---AGGAAFLKAL---SSPL-AGTFFCPTGGIS 154 (201)
T ss_pred ---HHHHHHH-HHcCCCEe-CCCCCHHHHHHHHHCCCCEEEECCchh---hCCHHHHHHH---HhhC-CCCcEEecCCCC
Confidence 4555554 45688877 678999999999999999999987321 1234434333 3223 479999999998
Q ss_pred CHHHHHHHHHcCCCEEEEcHHHH
Q 021614 231 RGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 231 ~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
.+++.+++++|+..++.|+.+.
T Consensus 155 -~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 155 -LKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred -HHHHHHHHhCCCeEEEEchhhC
Confidence 6899999999988777776654
No 99
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.13 E-value=8.8e-09 Score=91.07 Aligned_cols=98 Identities=23% Similarity=0.268 Sum_probs=76.8
Q ss_pred HHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCC--CCCCcchHHHHHHHHHHhcCCceEEEecCCCC
Q 021614 154 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRR 231 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (310)
.+.++++++..++|+++ .+.+++++..+.++|+|++.+.++|-+. .....+.++.+.++++.+ ++|+++.|||++
T Consensus 112 ~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~ 188 (219)
T cd04729 112 AELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINS 188 (219)
T ss_pred HHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCC
Confidence 35677777766677776 4568899999999999999765544221 111234577788887766 799999999999
Q ss_pred HHHHHHHHHcCCCEEEEcHHHHH
Q 021614 232 GTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 232 ~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
++|+.+++.+|||+|++|++++.
T Consensus 189 ~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 189 PEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred HHHHHHHHHCCCCEEEEchHHhC
Confidence 99999999999999999999875
No 100
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.13 E-value=1.6e-09 Score=103.48 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=77.3
Q ss_pred CcccHHHHHHHHhhC--CCCEEEEecC----------------------CHH----HHHHHHHcCCcEEEEecCCCCCCC
Q 021614 150 RSLSWKDVKWLQTIT--KLPILVKGVL----------------------TAE----DARIAVQAGAAGIIVSNHGARQLD 201 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~--~~pv~vK~~~----------------------~~~----~a~~~~~aGad~I~v~~~gg~~~~ 201 (310)
..+..++++.||+.+ +.||.+|+.. +.+ .++.+.++|+|+|.++.....+..
T Consensus 201 ~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~ 280 (382)
T cd02931 201 LRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWY 280 (382)
T ss_pred hHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccc
Confidence 456789999999998 5799999762 233 357788899999999764321111
Q ss_pred ------C-Ccch-HHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHHH
Q 021614 202 ------Y-VPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 255 (310)
Q Consensus 202 ------~-~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~~ 255 (310)
. .... +.....+++.+ ++||+++|||++++++.++++.| ||+|++||+++..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~lad 341 (382)
T cd02931 281 WNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLAD 341 (382)
T ss_pred cccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhC
Confidence 0 1111 23445566665 79999999999999999999987 9999999999863
No 101
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.11 E-value=1.1e-08 Score=96.69 Aligned_cols=102 Identities=27% Similarity=0.313 Sum_probs=74.2
Q ss_pred ccHHHHHHHHhhCC--CCEEEEecC---------CH----HHHHHHHHcC-CcEEEEecCCCCC---CCCC-cchH-HHH
Q 021614 152 LSWKDVKWLQTITK--LPILVKGVL---------TA----EDARIAVQAG-AAGIIVSNHGARQ---LDYV-PATI-MAL 210 (310)
Q Consensus 152 ~~~~~i~~ir~~~~--~pv~vK~~~---------~~----~~a~~~~~aG-ad~I~v~~~gg~~---~~~~-~~~~-~~l 210 (310)
+..|+++.+|+.++ .||.+++.. +. +.++.+.+.| +|+|.++..+... .... +... ...
T Consensus 201 f~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a 280 (363)
T COG1902 201 FLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFA 280 (363)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHH
Confidence 56799999999984 588888762 22 3368889999 7999998743211 1111 1111 222
Q ss_pred HHHHHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHHH
Q 021614 211 EEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 255 (310)
Q Consensus 211 ~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~~ 255 (310)
..++... ++|+|++|+|++++.+.++++.| ||.|.+||+|+..
T Consensus 281 ~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~lad 324 (363)
T COG1902 281 ARIKKAV--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLAD 324 (363)
T ss_pred HHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcC
Confidence 3344444 69999999999999999999998 9999999999863
No 102
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.11 E-value=6.7e-10 Score=100.05 Aligned_cols=134 Identities=24% Similarity=0.304 Sum_probs=93.0
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHH
Q 021614 80 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKW 159 (310)
Q Consensus 80 ~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (310)
+..+.++++|++.++++++||..- +.. .|...+ ..-+.|++
T Consensus 28 ~~a~iae~~g~~~v~~~~~~psd~---------------~~~----------------gg~~Rm--------~~p~~I~a 68 (293)
T PRK04180 28 EQAKIAEEAGAVAVMALERVPADI---------------RAA----------------GGVARM--------ADPKMIEE 68 (293)
T ss_pred HHHHHHHHhChHHHHHccCCCchH---------------hhc----------------CCeeec--------CCHHHHHH
Confidence 345667889999999999999851 100 011111 11367888
Q ss_pred HHhhCCCCEEEEecCC-HHHHHHHHHcCCcEEEEecC-------------------------------------------
Q 021614 160 LQTITKLPILVKGVLT-AEDARIAVQAGAAGIIVSNH------------------------------------------- 195 (310)
Q Consensus 160 ir~~~~~pv~vK~~~~-~~~a~~~~~aGad~I~v~~~------------------------------------------- 195 (310)
+++.+++||+.|.... ..+++.+.++|+|.|.-+..
T Consensus 69 Ik~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 69 IMDAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTK 148 (293)
T ss_pred HHHhCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeecc
Confidence 9998999999887644 56777777777777764420
Q ss_pred --CCCC------------------CCC------------CcchHHHHHHHHHHhcCCceEE--EecCCCCHHHHHHHHHc
Q 021614 196 --GARQ------------------LDY------------VPATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALAL 241 (310)
Q Consensus 196 --gg~~------------------~~~------------~~~~~~~l~~i~~~~~~~ipvi--a~GGI~~~~dv~k~l~~ 241 (310)
.|+. +.+ ..+.++.|.++++.. ++||+ +.|||.+++|+.+++.+
T Consensus 149 ge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~ 226 (293)
T PRK04180 149 GEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQL 226 (293)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHh
Confidence 0000 000 113456666666544 69998 99999999999999999
Q ss_pred CCCEEEEcHHHHH
Q 021614 242 GASGIFIGRPVVY 254 (310)
Q Consensus 242 GAd~V~ig~~~l~ 254 (310)
|||+|.+||.++.
T Consensus 227 GAdgVaVGSaI~k 239 (293)
T PRK04180 227 GADGVFVGSGIFK 239 (293)
T ss_pred CCCEEEEcHHhhc
Confidence 9999999999875
No 103
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.09 E-value=9.1e-09 Score=87.40 Aligned_cols=96 Identities=21% Similarity=0.260 Sum_probs=71.8
Q ss_pred HHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCC-CCcchHHHHHHHHHHhcCCceEEEecCCCCH
Q 021614 154 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRG 232 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (310)
.+.++++++.. -+++--+.|.|++..+.++|+|.|--...|.+... ...|.++.+.++.+. ++|||+.|+|+++
T Consensus 82 ~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~---~~pvIaEGri~tp 156 (192)
T PF04131_consen 82 EELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA---DVPVIAEGRIHTP 156 (192)
T ss_dssp HHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT---TSEEEEESS--SH
T ss_pred HHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC---CCcEeecCCCCCH
Confidence 46789999987 45556789999999999999999976555433211 145788888888763 7999999999999
Q ss_pred HHHHHHHHcCCCEEEEcHHHHH
Q 021614 233 TDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 233 ~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+++.+++.+||++|.+|+++..
T Consensus 157 e~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 157 EQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp HHHHHHHHTT-SEEEE-HHHH-
T ss_pred HHHHHHHhcCCeEEEECcccCC
Confidence 9999999999999999999865
No 104
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=99.06 E-value=3.1e-10 Score=98.14 Aligned_cols=165 Identities=19% Similarity=0.243 Sum_probs=113.6
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCC-cccccccccccccccccccchhhHHHhhhccCC
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 150 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (310)
..+.+...++++.+.+.|++.++||+++|....-.+.++.++ |. .++.+++.. ..+++.....|+.+.++|..+
T Consensus 16 ~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~~~vGAGTV~~--~e~a~~a~~aGA~FivSP~~~- 90 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF--PDLLVGAGTVLT--AEQAEAAIAAGAQFIVSPGFD- 90 (196)
T ss_dssp TSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH--TTSEEEEES--S--HHHHHHHHHHT-SEEEESS---
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC--CCCeeEEEeccC--HHHHHHHHHcCCCEEECCCCC-
Confidence 567888899999999999999999999987655556677776 43 456666553 234455556777777776554
Q ss_pred cccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCC
Q 021614 151 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 230 (310)
Q Consensus 151 ~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 230 (310)
-++++..+ ..++|++ -+++|+.++..+.++|++.|.++..+- .+|+.. ++.++. .-.+++++.+|||.
T Consensus 91 ---~~v~~~~~-~~~i~~i-PG~~TptEi~~A~~~G~~~vK~FPA~~---~GG~~~---ik~l~~-p~p~~~~~ptGGV~ 158 (196)
T PF01081_consen 91 ---PEVIEYAR-EYGIPYI-PGVMTPTEIMQALEAGADIVKLFPAGA---LGGPSY---IKALRG-PFPDLPFMPTGGVN 158 (196)
T ss_dssp ---HHHHHHHH-HHTSEEE-EEESSHHHHHHHHHTT-SEEEETTTTT---TTHHHH---HHHHHT-TTTT-EEEEBSS--
T ss_pred ---HHHHHHHH-HcCCccc-CCcCCHHHHHHHHHCCCCEEEEecchh---cCcHHH---HHHHhc-cCCCCeEEEcCCCC
Confidence 45555554 4578877 678999999999999999999987431 122433 333332 22479999999998
Q ss_pred CHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 231 RGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 231 ~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+++.+++++|+.+|++|+.++.
T Consensus 159 -~~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 159 -PDNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp -TTTHHHHHTSTTBSEEEESGGGS
T ss_pred -HHHHHHHHhCCCEEEEECchhcC
Confidence 58999999999999999998764
No 105
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=99.04 E-value=3.3e-10 Score=103.23 Aligned_cols=176 Identities=18% Similarity=0.243 Sum_probs=126.5
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHH
Q 021614 78 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 157 (310)
Q Consensus 78 ~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 157 (310)
+.++.++-+++|++.+++|+.||.. ++. + +.+..++ -+|...-|+.
T Consensus 220 w~el~d~~eqag~d~lE~nlscphg------------m~e----r----------------gmgla~g--q~p~v~~EvC 265 (471)
T KOG1799|consen 220 WMELNDSGEQAGQDDLETNLSCPHG------------MCE----R----------------GMGLALG--QCPIVDCEVC 265 (471)
T ss_pred HHHHhhhHHhhcccchhccCCCCCC------------Ccc----c----------------cccceec--cChhhhHHHh
Confidence 4456666778888888888888773 111 0 0011111 2455567889
Q ss_pred HHHHhhCCCCEEEEecCCH----HHHHHHHHcCCcEEEEecC------------------CCCCCCCC-------cchHH
Q 021614 158 KWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH------------------GARQLDYV-------PATIM 208 (310)
Q Consensus 158 ~~ir~~~~~pv~vK~~~~~----~~a~~~~~aGad~I~v~~~------------------gg~~~~~~-------~~~~~ 208 (310)
.|++....+|++-|+..+. +.++.+.+.|+.+|...|+ .+++-.++ |-...
T Consensus 266 ~Wi~A~~~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~ 345 (471)
T KOG1799|consen 266 GWINAKATIPMVSKMTPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALA 345 (471)
T ss_pred hhhhhccccccccccCCCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHH
Confidence 9999999999999998643 4477788889988876552 01111121 22344
Q ss_pred HHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHh
Q 021614 209 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLK 288 (310)
Q Consensus 209 ~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~ 288 (310)
.+..|++.+. ..|+.+.|||.++.|.++.+.+|++.|++++..+. +|.. .++.+-.||+.+|.++|..+|+
T Consensus 346 ~V~~IA~~m~-~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~----~~~~----~V~~~Ca~LK~~m~~~~~~ti~ 416 (471)
T KOG1799|consen 346 KVMNIAKMMK-EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMM----HGYG----HVKTLCAELKDFMKQHNFSTIE 416 (471)
T ss_pred HHHHHHHHhh-cCccccccCcccccchhhHhhcCCcHhhhhhHHHh----cCcc----hHHHHHHHHHHHHHHcCchhhh
Confidence 4555555554 78999999999999999999999999999998875 4553 3467889999999999999999
Q ss_pred hhccccee
Q 021614 289 EITRDHIV 296 (310)
Q Consensus 289 ~l~~~~~~ 296 (310)
++|++.+.
T Consensus 417 ~~~G~SL~ 424 (471)
T KOG1799|consen 417 EFRGHSLQ 424 (471)
T ss_pred hccCcchh
Confidence 99998753
No 106
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.04 E-value=4.7e-08 Score=87.88 Aligned_cols=166 Identities=16% Similarity=0.235 Sum_probs=104.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
+.+.+.+.++++.+++. +++|++++.||.+-. +.+.++.. ....+.. .
T Consensus 14 ~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~a-----------------------dG~~i~~~----~~~a~~~----g 61 (244)
T PRK13125 14 YPNVESFKEFIIGLVEL-VDILELGIPPKYPKY-----------------------DGPVIRKS----HRKVKGL----D 61 (244)
T ss_pred CCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCC-----------------------CCHHHHHH----HHHHHHc----C
Confidence 45788889999988887 999999998876510 11111111 1112211 1
Q ss_pred ccHHHHHHHHhhCCCCEE--EEec---CCHHH-HHHHHHcCCcEEEEec-------C-----------C---------CC
Q 021614 152 LSWKDVKWLQTITKLPIL--VKGV---LTAED-ARIAVQAGAAGIIVSN-------H-----------G---------AR 198 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~--vK~~---~~~~~-a~~~~~aGad~I~v~~-------~-----------g---------g~ 198 (310)
. ++.++++|+.+++|+. +|.. ..++. ++.+.++|+|+|.+.. + | .+
T Consensus 62 ~-~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T 140 (244)
T PRK13125 62 I-WPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKF 140 (244)
T ss_pred c-HHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 1 6889999988899975 3332 24443 7889999999999861 0 0 00
Q ss_pred C----------CC-----------CC--cc-hHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 199 Q----------LD-----------YV--PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 199 ~----------~~-----------~~--~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
. .+ ++ +. ..+.+.++++.. .+.||+++|||++++++.+++.+|||++.+||+++.
T Consensus 141 ~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~-~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 141 PDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLV-GNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhc-CCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0 00 11 11 122344444433 257899999999999999999999999999999986
Q ss_pred HhhhccHHHHHHHHHHH
Q 021614 255 SLAAEGEKGVRRVLEML 271 (310)
Q Consensus 255 ~~~~~G~~~v~~~l~~l 271 (310)
.+...+.+...++++.+
T Consensus 220 ~~~~~~~~~~~~~~~~~ 236 (244)
T PRK13125 220 ELEKNGVESALNLLKKI 236 (244)
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 44323333344444433
No 107
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=99.01 E-value=1.5e-08 Score=91.33 Aligned_cols=159 Identities=21% Similarity=0.295 Sum_probs=103.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
+.|.+.+.++++.+.+.|++.|++.+.- +.|. .|.+.++.+ +...+..+.+..
T Consensus 20 ~P~~~~~~~~~~~l~~~GaD~iEiGiPf--------------SDP~---------ADGpvIq~A----~~rAL~~G~~~~ 72 (259)
T PF00290_consen 20 YPDLETTLEILKALEEAGADIIEIGIPF--------------SDPV---------ADGPVIQKA----SQRALKNGFTLE 72 (259)
T ss_dssp SSSHHHHHHHHHHHHHTTBSSEEEE--S--------------SSCT---------TSSHHHHHH----HHHHHHTT--HH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCC--------------CCCC---------CCCHHHHHH----HHHHHHCCCCHH
Confidence 3577999999999999999999986642 2231 123333332 334555555666
Q ss_pred ccHHHHHHHH-hhCCCCEEEEecCC------H-HHHHHHHHcCCcEEEEec---------------CCC---------CC
Q 021614 152 LSWKDVKWLQ-TITKLPILVKGVLT------A-EDARIAVQAGAAGIIVSN---------------HGA---------RQ 199 (310)
Q Consensus 152 ~~~~~i~~ir-~~~~~pv~vK~~~~------~-~~a~~~~~aGad~I~v~~---------------~gg---------~~ 199 (310)
..++.++++| +..+.|+++-...+ . ..++.+.++|+|++.+-. +|- +.
T Consensus 73 ~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~ 152 (259)
T PF00290_consen 73 KIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTP 152 (259)
T ss_dssp HHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-
T ss_pred HHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 6788999999 67799999876532 2 357888899999998842 110 00
Q ss_pred -------------------C---CCC----cc-hHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHH
Q 021614 200 -------------------L---DYV----PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 200 -------------------~---~~~----~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
. .+. +. ..+.+.++++.. ++||++.-||++++|+.+.. .|||+|.+||++
T Consensus 153 ~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~ 229 (259)
T PF00290_consen 153 EERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAF 229 (259)
T ss_dssp HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHH
T ss_pred HHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHH
Confidence 0 011 11 123345555443 79999999999999998876 999999999999
Q ss_pred HHHhhhcc
Q 021614 253 VYSLAAEG 260 (310)
Q Consensus 253 l~~~~~~G 260 (310)
+..+...+
T Consensus 230 v~~i~~~~ 237 (259)
T PF00290_consen 230 VKIIEENG 237 (259)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcc
Confidence 98765433
No 108
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.01 E-value=8.4e-08 Score=91.06 Aligned_cols=98 Identities=13% Similarity=-0.040 Sum_probs=70.2
Q ss_pred ccHHHHHHHHhhCC-CCEEEEec-----------CCHHH-----HHHHHHcCCcEEEEecCCCCCCCCCcc-hHHHHHHH
Q 021614 152 LSWKDVKWLQTITK-LPILVKGV-----------LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEV 213 (310)
Q Consensus 152 ~~~~~i~~ir~~~~-~pv~vK~~-----------~~~~~-----a~~~~~aGad~I~v~~~gg~~~~~~~~-~~~~l~~i 213 (310)
+..|+++.||+.++ -.|.+|+. .+.++ ++.+.+.|+|+|.|+..... ...+ ......++
T Consensus 211 f~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~---~~~~~~~~~~~~i 287 (362)
T PRK10605 211 LVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWA---GGEPYSDAFREKV 287 (362)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecccccc---CCccccHHHHHHH
Confidence 45799999999873 35777763 23333 57788899999999852111 1111 12223455
Q ss_pred HHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHHH
Q 021614 214 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 255 (310)
Q Consensus 214 ~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~~ 255 (310)
++.+ ++||++.|++ +++++.++++.| ||+|++||+++..
T Consensus 288 k~~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iad 327 (362)
T PRK10605 288 RARF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIAN 327 (362)
T ss_pred HHHC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhC
Confidence 5555 6899999996 899999999998 9999999999863
No 109
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=99.00 E-value=4.6e-08 Score=87.84 Aligned_cols=156 Identities=18% Similarity=0.227 Sum_probs=102.9
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
+.+.+.+.+.++.+++.|++.|.+++ |.. .|. . |.+.++ +.....+....+.+
T Consensus 10 ~P~~~~~~~~~~~l~~~Gad~iel~i--Pfs------------dPv------~---DG~~I~----~a~~~al~~g~~~~ 62 (242)
T cd04724 10 DPDLETTLEILKALVEAGADIIELGI--PFS------------DPV------A---DGPVIQ----AASERALANGVTLK 62 (242)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECC--CCC------------CCC------C---CCHHHH----HHHHHHHHcCCCHH
Confidence 34678888999999999999998865 332 121 0 111111 11223444444455
Q ss_pred ccHHHHHHHHhhCCCCEEEEecCC-------HHHHHHHHHcCCcEEEEec---------------CCC---------CC-
Q 021614 152 LSWKDVKWLQTITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGA---------RQ- 199 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK~~~~-------~~~a~~~~~aGad~I~v~~---------------~gg---------~~- 199 (310)
..++.++++|+..++|+++-...+ ...++.+.++|+|++++.. +|- +.
T Consensus 63 ~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~ 142 (242)
T cd04724 63 DVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPD 142 (242)
T ss_pred HHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 678899999998889977633323 3457889999999998821 010 00
Q ss_pred ----------C-----------CCC-----cchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 200 ----------L-----------DYV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 200 ----------~-----------~~~-----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
. .++ ....+.+.++++. .++||+..|||++.+++.++... ||++.+|++++
T Consensus 143 ~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~--~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 143 ERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY--TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred HHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc--CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHH
Confidence 0 011 1123445555543 27999999999999999999999 99999999998
Q ss_pred HHhh
Q 021614 254 YSLA 257 (310)
Q Consensus 254 ~~~~ 257 (310)
.-+.
T Consensus 220 ~~~~ 223 (242)
T cd04724 220 KIIE 223 (242)
T ss_pred HHHH
Confidence 7653
No 110
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.00 E-value=1.5e-08 Score=89.35 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 207 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 207 ~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
.+.+.++++.+..++|+++.|||++++|+.+++.+|||+|.+|++++..
T Consensus 159 ~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~~ 207 (217)
T cd00331 159 LNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMRA 207 (217)
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 4555666554434689999999999999999999999999999998753
No 111
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.99 E-value=1e-08 Score=88.76 Aligned_cols=168 Identities=18% Similarity=0.163 Sum_probs=109.6
Q ss_pred EEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhcc
Q 021614 69 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQI 148 (310)
Q Consensus 69 l~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (310)
+.-..+++...+.++.+.+.|++.+.+++..+....-.+.++..+.. ..++.+++.. ...++.....+....++++.
T Consensus 9 i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~-~~iGag~v~~--~~~~~~a~~~Ga~~i~~p~~ 85 (190)
T cd00452 9 VLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPE-ALIGAGTVLT--PEQADAAIAAGAQFIVSPGL 85 (190)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCC-CEEEEEeCCC--HHHHHHHHHcCCCEEEcCCC
Confidence 33366788888889999999999999998876643334556555531 1223222221 11111221223333333333
Q ss_pred CCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecC
Q 021614 149 DRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 228 (310)
Q Consensus 149 ~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (310)
+ .+ +...++..+.++++ ++.|++++..+.++|+|+|.++... +...+.+..+++.+ ..+|+++.||
T Consensus 86 ~----~~-~~~~~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~~-------~~g~~~~~~l~~~~-~~~p~~a~GG 151 (190)
T cd00452 86 D----PE-VVKAANRAGIPLLP-GVATPTEIMQALELGADIVKLFPAE-------AVGPAYIKALKGPF-PQVRFMPTGG 151 (190)
T ss_pred C----HH-HHHHHHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCCc-------ccCHHHHHHHHhhC-CCCeEEEeCC
Confidence 3 33 44445556788776 5569999999999999999985421 11244455554433 2599999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 229 VRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 229 I~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
| +.+++.+++.+||++|.+++.+..
T Consensus 152 I-~~~n~~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 152 V-SLDNAAEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred C-CHHHHHHHHHCCCEEEEEchhcch
Confidence 9 899999999999999999998863
No 112
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.98 E-value=7.1e-08 Score=86.87 Aligned_cols=97 Identities=25% Similarity=0.348 Sum_probs=77.9
Q ss_pred HHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCC----------------------C---------CC
Q 021614 155 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL----------------------D---------YV 203 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~----------------------~---------~~ 203 (310)
+.+..+++.++.|+++ .+.+.+++.++.+.|+|.|.-.+.+++.. + .-
T Consensus 104 e~~~~~K~~f~vpfma-d~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~ 182 (287)
T TIGR00343 104 WTFHIDKKKFKVPFVC-GARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKEL 182 (287)
T ss_pred HHHHHHHHHcCCCEEc-cCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhccc
Confidence 5677778878899886 56789999999999999998776555431 0 01
Q ss_pred cchHHHHHHHHHHhcCCceEE--EecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 204 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 204 ~~~~~~l~~i~~~~~~~ipvi--a~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.++.|.++++.. ++||+ +.|||.|++|+.+++.+|||+|.+|+.++.
T Consensus 183 ~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 183 RVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred CCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 24567777777654 79998 999999999999999999999999999875
No 113
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.7e-08 Score=94.48 Aligned_cols=205 Identities=20% Similarity=0.231 Sum_probs=140.3
Q ss_pred cccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCC--CCHHHHHc---------------------cCC--
Q 021614 8 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SSVEEVAS---------------------TGP-- 62 (310)
Q Consensus 8 ~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~--~~~e~i~~---------------------~~~-- 62 (310)
..+.+=+++|||- .-|+.+++..|-++|+.++.+..-. ..++-+.. ..|
T Consensus 7 l~y~nk~iLApMv------r~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e 80 (477)
T KOG2334|consen 7 LFYRNKLILAPMV------RAGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAE 80 (477)
T ss_pred hhhcCcEeeehHH------HhccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhh
Confidence 3456778999992 2247789999999999998876421 11111110 001
Q ss_pred -CceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhH
Q 021614 63 -GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 141 (310)
Q Consensus 63 -~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (310)
....||+. -.+++...+..+.+ ...+..|++|++||-+ |+ + ..+.|++
T Consensus 81 ~~rlilQ~g-T~sa~lA~e~A~lv-~nDvsgidiN~gCpK~----------fS----i---------------~~gmgaa 129 (477)
T KOG2334|consen 81 NSRLILQIG-TASAELALEAAKLV-DNDVSGIDINMGCPKE----------FS----I---------------HGGMGAA 129 (477)
T ss_pred cCeEEEEec-CCcHHHHHHHHHHh-hcccccccccCCCCCc----------cc----c---------------ccCCCch
Confidence 13567886 46677776665543 3456678999999985 11 0 0012222
Q ss_pred HHhhhccCCcccHHHHHHHHhhCCCCEEEEecC--C----HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHH
Q 021614 142 AYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL--T----AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 215 (310)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~--~----~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~ 215 (310)
.+ .+|+....++..+.+...+|+.+|++. + .+..+++.+.|+.+|.++.+........+.+.+.+.++..
T Consensus 130 -lL---t~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~ 205 (477)
T KOG2334|consen 130 -LL---TDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQ 205 (477)
T ss_pred -hh---cCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHH
Confidence 22 367777888999999999999999972 3 3457888899999999987542111123567778888877
Q ss_pred HhcCCceEEEecCCCC---HHHHHHHHH-cCCCEEEEcHHHHH
Q 021614 216 ATQGRIPVFLDGGVRR---GTDVFKALA-LGASGIFIGRPVVY 254 (310)
Q Consensus 216 ~~~~~ipvia~GGI~~---~~dv~k~l~-~GAd~V~ig~~~l~ 254 (310)
.++ .+|||+.||..+ ..|+.+.-. .|++.||+.|....
T Consensus 206 ~~~-~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~ 247 (477)
T KOG2334|consen 206 ACQ-MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAES 247 (477)
T ss_pred Hhc-cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhc
Confidence 764 399999999999 888888766 69999999996654
No 114
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.93 E-value=1.3e-08 Score=89.83 Aligned_cols=172 Identities=19% Similarity=0.208 Sum_probs=104.7
Q ss_pred EEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhc--------cCCCCcccccccccccccccccccchhh
Q 021614 69 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR--------FTLPPFLTLKNFQGLDLGKMDEANDSGL 140 (310)
Q Consensus 69 l~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 140 (310)
|.+....+.+.++++++.+.|+.++.++ |......++.-.+ .++|.+......+..+ .+.+...++
T Consensus 15 L~p~~t~~~i~~~~~~A~~~~~~avcv~---p~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~e---~~~Ai~~GA 88 (221)
T PRK00507 15 LKPEATEEDIDKLCDEAKEYGFASVCVN---PSYVKLAAELLKGSDVKVCTVIGFPLGANTTAVKAFE---AKDAIANGA 88 (221)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEEEC---HHHHHHHHHHhCCCCCeEEEEecccCCCChHHHHHHH---HHHHHHcCC
Confidence 4445677888999999999999888873 4443333222111 2344432211111000 000001111
Q ss_pred HH--Hhh-----hccCCcccHHHHHHHHhhCCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEecCCCCCCCCCc
Q 021614 141 AA--YVA-----GQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVP 204 (310)
Q Consensus 141 ~~--~~~-----~~~~~~~~~~~i~~ir~~~~~pv~vK~~-----~~~~~----a~~~~~aGad~I~v~~~gg~~~~~~~ 204 (310)
.+ ++. ...+.+...+.++.+++.. .|+.+|.+ ++.++ ++.+.++|+|+|..+...+ .+.
T Consensus 89 ~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~----~~g 163 (221)
T PRK00507 89 DEIDMVINIGALKSGDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFS----TGG 163 (221)
T ss_pred ceEeeeccHHHhcCCCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCC
Confidence 11 110 0123334456777887765 47888985 34443 4668899999988654321 233
Q ss_pred chHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHH
Q 021614 205 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 251 (310)
Q Consensus 205 ~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~ 251 (310)
.+.+.+..+++..+++++|.++|||++.+|+.+.+.+||+.++..+.
T Consensus 164 at~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 164 ATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred CCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 56666766777777789999999999999999999999999887764
No 115
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.92 E-value=2.4e-08 Score=86.20 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=109.2
Q ss_pred EEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhh
Q 021614 67 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 146 (310)
Q Consensus 67 ~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (310)
+-+.-..+++...+.++.+.+.|++.+.++...+.........+..+..- ....+++... +.++.+...++...++|
T Consensus 15 ~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~-~~g~gtvl~~--d~~~~A~~~gAdgv~~p 91 (187)
T PRK07455 15 IAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPEC-IIGTGTILTL--EDLEEAIAAGAQFCFTP 91 (187)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCc-EEeEEEEEcH--HHHHHHHHcCCCEEECC
Confidence 33443678888888888888899999999888776543344443333211 1111122211 12222222333334444
Q ss_pred ccCCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEe
Q 021614 147 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 226 (310)
Q Consensus 147 ~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~ 226 (310)
..+ ..+..+++..+.+.+++ +.|++++..+.+.|+|+|.++.+. . ....+.+..++..+ ..+|+++.
T Consensus 92 ~~~-----~~~~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt~---~---~~G~~~l~~~~~~~-~~ipvvai 158 (187)
T PRK07455 92 HVD-----PELIEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPVQ---A---VGGADYIKSLQGPL-GHIPLIPT 158 (187)
T ss_pred CCC-----HHHHHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcCC---c---ccCHHHHHHHHhhC-CCCcEEEe
Confidence 333 33444566667777765 889999999999999999985431 1 11245566655544 36999999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 227 GGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 227 GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
|||. .+++..++++||++|.+++.++
T Consensus 159 GGI~-~~n~~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 159 GGVT-LENAQAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred CCCC-HHHHHHHHHCCCeEEEEehhcc
Confidence 9995 8999999999999999999875
No 116
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=2.9e-07 Score=78.75 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=67.7
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCC--CCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcC
Q 021614 165 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG 242 (310)
Q Consensus 165 ~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~G 242 (310)
..-+..--+.+.|+...+.++|+|+|--.-+|.+. .....+.+..+.++.+ .+.+||+.|.++|++++.+++..|
T Consensus 126 ~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~---~~~~vIAEGr~~tP~~Ak~a~~~G 202 (229)
T COG3010 126 PGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD---AGCRVIAEGRYNTPEQAKKAIEIG 202 (229)
T ss_pred CCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh---CCCeEEeeCCCCCHHHHHHHHHhC
Confidence 34455566789999999999999999543333322 1123467888877765 279999999999999999999999
Q ss_pred CCEEEEcHHHHH
Q 021614 243 ASGIFIGRPVVY 254 (310)
Q Consensus 243 Ad~V~ig~~~l~ 254 (310)
|++|.+|+++..
T Consensus 203 a~aVvVGsAITR 214 (229)
T COG3010 203 ADAVVVGSAITR 214 (229)
T ss_pred CeEEEECcccCC
Confidence 999999998753
No 117
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.90 E-value=5.8e-08 Score=85.23 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=116.2
Q ss_pred EEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhcc
Q 021614 69 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQI 148 (310)
Q Consensus 69 l~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (310)
+.-..+.+...++++.+.+.|++.|+|++..|..-.-.+.++..|. ...+..+++.. ..+++.....|+...++|..
T Consensus 20 V~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p-~~~IGAGTVl~--~~~a~~a~~aGA~FivsP~~ 96 (212)
T PRK05718 20 VIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVP-EALIGAGTVLN--PEQLAQAIEAGAQFIVSPGL 96 (212)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCC-CCEEEEeeccC--HHHHHHHHHcCCCEEECCCC
Confidence 3336789999999999999999999999999876555577877763 12345555443 23444455567677776654
Q ss_pred CCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecC
Q 021614 149 DRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 228 (310)
Q Consensus 149 ~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (310)
+ -+.++..++ .++|++ -++.|+.++..+.++|+|.|.++..+- . +++. .+..++.-+ ..++++.+||
T Consensus 97 ~----~~vi~~a~~-~~i~~i-PG~~TptEi~~a~~~Ga~~vKlFPa~~--~-gg~~---~lk~l~~p~-p~~~~~ptGG 163 (212)
T PRK05718 97 T----PPLLKAAQE-GPIPLI-PGVSTPSELMLGMELGLRTFKFFPAEA--S-GGVK---MLKALAGPF-PDVRFCPTGG 163 (212)
T ss_pred C----HHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEEccchh--c-cCHH---HHHHHhccC-CCCeEEEeCC
Confidence 4 455655544 677766 577899999999999999999975321 1 1333 333333333 4799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 229 VRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 229 I~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
|. .+++.+++.+|+..++.|+.++
T Consensus 164 V~-~~ni~~~l~ag~v~~vggs~L~ 187 (212)
T PRK05718 164 IS-PANYRDYLALPNVLCIGGSWMV 187 (212)
T ss_pred CC-HHHHHHHHhCCCEEEEEChHhC
Confidence 98 6999999999955555555443
No 118
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.85 E-value=5.3e-08 Score=87.61 Aligned_cols=97 Identities=25% Similarity=0.356 Sum_probs=78.4
Q ss_pred HHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCC------------------C------------CCc
Q 021614 155 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------------------D------------YVP 204 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~------------------~------------~~~ 204 (310)
+.+..+|+.++.|++. .+.|.+++.++.+.|+|.|-....|++.. . ...
T Consensus 102 ~~~~~iK~~~~~l~MA-D~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~ 180 (283)
T cd04727 102 EEHHIDKHKFKVPFVC-GARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQ 180 (283)
T ss_pred HHHHHHHHHcCCcEEc-cCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccC
Confidence 5678888878888774 66799999999999999998766554432 0 012
Q ss_pred chHHHHHHHHHHhcCCceEE--EecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 205 ATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 205 ~~~~~l~~i~~~~~~~ipvi--a~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+.++.|.++.+.. ++||+ +.|||.+++++.+++.+||++|.+|++++.
T Consensus 181 ~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 181 APYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 4677788887765 69997 999999999999999999999999999975
No 119
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.83 E-value=1.7e-07 Score=84.99 Aligned_cols=102 Identities=18% Similarity=0.252 Sum_probs=73.4
Q ss_pred HHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEecCC-C----------------------------------
Q 021614 154 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHG-A---------------------------------- 197 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~~g-g---------------------------------- 197 (310)
.+.++.+++.+++||+.|.. .++.++..+.++|||+|.+.... .
T Consensus 100 ~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~ 179 (260)
T PRK00278 100 LEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKL 179 (260)
T ss_pred HHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc
Confidence 46788888888888888865 44667888888888888876421 0
Q ss_pred ---------CCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 198 ---------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 198 ---------~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
+......+.++...++.+.++..+++|+.|||.+++|+.+++.+|||+|.+|++++..
T Consensus 180 gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 180 GAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred CCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 0000012234445555554444579999999999999999999999999999999863
No 120
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.76 E-value=4.9e-08 Score=85.00 Aligned_cols=173 Identities=20% Similarity=0.228 Sum_probs=108.2
Q ss_pred EEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhc---------cCCCCcccccccccccccccccccchh
Q 021614 69 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR---------FTLPPFLTLKNFQGLDLGKMDEANDSG 139 (310)
Q Consensus 69 l~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~---------~~~p~~~~~~~~~~~~~~~~~~~~~~~ 139 (310)
|.+...++.+.++++.+++.|+.++.| .|....-.++.-.+ ..||.+......+..+ .+..+..|
T Consensus 17 Lk~~~T~~~I~~l~~eA~~~~f~avCV---~P~~V~~A~~~l~g~~~~~v~tVigFP~G~~~t~~K~~E---a~~ai~~G 90 (228)
T COG0274 17 LKPDATEEDIARLCAEAKEYGFAAVCV---NPSYVPLAKEALKGSTVVRVCTVIGFPLGANTTAVKAAE---AREAIENG 90 (228)
T ss_pred CCCCCCHHHHHHHHHHHHhhCceEEEE---CcchHHHHHHHhccCCCeEEEEecCCCCCCChHHHHHHH---HHHHHHcC
Confidence 444566788888899999999888877 34443333222111 2345433221111000 00111223
Q ss_pred hHH--Hhh-----hccCCcccHHHHHHHHhhCCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEecCCCCCCCCC
Q 021614 140 LAA--YVA-----GQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYV 203 (310)
Q Consensus 140 ~~~--~~~-----~~~~~~~~~~~i~~ir~~~~~pv~vK~~-----~~~~~----a~~~~~aGad~I~v~~~gg~~~~~~ 203 (310)
+.+ ++. ...+.+...++|+.+++.+.-++.+|.+ ++.++ .+.+.++|+|+|.-|.... .+
T Consensus 91 AdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~----~~ 166 (228)
T COG0274 91 ADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFS----AG 166 (228)
T ss_pred CCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCC----CC
Confidence 332 111 1135556678899999988655778876 34333 4668899999999765322 23
Q ss_pred cchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHH
Q 021614 204 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 251 (310)
Q Consensus 204 ~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~ 251 (310)
..+.+.+.-+++.++.++.|-++||||+.+|+.+++.+||+.++..+.
T Consensus 167 gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs~ 214 (228)
T COG0274 167 GATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAGATRIGTSSG 214 (228)
T ss_pred CCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHhHHHhccccH
Confidence 456666666666677789999999999999999999999888776653
No 121
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.74 E-value=1.4e-07 Score=84.68 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHc-CCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~-GAd~V~ig~~~l~ 254 (310)
.+.++.+.+.|+|+|.+++....... ....++.+.++.+.. ++||+++|||++.+|+.+++.. |||+|++||+++.
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~~-~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGTK-KGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCCC-CCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 46678999999999999764321111 123577777777655 7999999999999999999997 9999999999987
Q ss_pred H
Q 021614 255 S 255 (310)
Q Consensus 255 ~ 255 (310)
+
T Consensus 229 ~ 229 (243)
T cd04731 229 G 229 (243)
T ss_pred C
Confidence 4
No 122
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.68 E-value=1.1e-07 Score=83.45 Aligned_cols=171 Identities=20% Similarity=0.227 Sum_probs=99.9
Q ss_pred EEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhc--------cCCCCcccccccccccccccccccchhh
Q 021614 69 LYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR--------FTLPPFLTLKNFQGLDLGKMDEANDSGL 140 (310)
Q Consensus 69 l~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~--------~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 140 (310)
|.+....+.+.++++++.+.++.++.+ .|......++.-.+ .+||.+......+..+ .+.+...|+
T Consensus 11 L~p~~t~~~i~~lc~~A~~~~~~avcv---~p~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E---~~~Av~~GA 84 (211)
T TIGR00126 11 LKADTTEEDIITLCAQAKTYKFAAVCV---NPSYVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYE---TKEAIKYGA 84 (211)
T ss_pred CCCCCCHHHHHHHHHHHHhhCCcEEEe---CHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHH---HHHHHHcCC
Confidence 444556788888888888888888877 34433333221111 3345432221111100 001111122
Q ss_pred HH--Hhh-----hccCCcccHHHHHHHHhhCCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEecCCCCCCCCCc
Q 021614 141 AA--YVA-----GQIDRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVP 204 (310)
Q Consensus 141 ~~--~~~-----~~~~~~~~~~~i~~ir~~~~~pv~vK~~-----~~~~~----a~~~~~aGad~I~v~~~gg~~~~~~~ 204 (310)
.+ ++. ...+.+...++++++++..+ .+.+|.+ ++.++ ++.+.++|+|+|..+.... .+.
T Consensus 85 dEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~----~~g 159 (211)
T TIGR00126 85 DEVDMVINIGALKDGNEEVVYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG----AGG 159 (211)
T ss_pred CEEEeecchHhhhCCcHHHHHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCC
Confidence 21 111 11244456778888888764 3344544 34333 4778899999999864211 122
Q ss_pred chHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 205 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 205 ~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
.+...+..+++.++++++|-++|||++.+++.+.+.+||+.++..+
T Consensus 160 at~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 160 ATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred CCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence 4455555555556668999999999999999999999999877654
No 123
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.64 E-value=1.5e-07 Score=84.51 Aligned_cols=77 Identities=25% Similarity=0.284 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHH---cCCCEEEEcHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA---LGASGIFIGRPV 252 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~---~GAd~V~ig~~~ 252 (310)
.+.++.+.+.|++.+.+++....+...++ .++.+.++.+.. ++||+++|||+|.+|+.+++. .|||+|++||++
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 45688999999999999875433333344 788998888765 799999999999999998865 499999999999
Q ss_pred HHH
Q 021614 253 VYS 255 (310)
Q Consensus 253 l~~ 255 (310)
+.+
T Consensus 226 ~~g 228 (241)
T PRK14024 226 YAG 228 (241)
T ss_pred HcC
Confidence 864
No 124
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=98.63 E-value=4.3e-07 Score=85.60 Aligned_cols=102 Identities=24% Similarity=0.270 Sum_probs=73.2
Q ss_pred ccHHHHHHHHhhC--CCCEEEEecCC--------HH----HHHHHHHcCCcEEEEecCCC----C--CC-C-CCcc--hH
Q 021614 152 LSWKDVKWLQTIT--KLPILVKGVLT--------AE----DARIAVQAGAAGIIVSNHGA----R--QL-D-YVPA--TI 207 (310)
Q Consensus 152 ~~~~~i~~ir~~~--~~pv~vK~~~~--------~~----~a~~~~~aGad~I~v~~~gg----~--~~-~-~~~~--~~ 207 (310)
+..|+|+.||+.+ +.||.+|+... .+ .++.+.+.|+|.+.++.... . .. . .... ..
T Consensus 201 f~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (341)
T PF00724_consen 201 FLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNL 280 (341)
T ss_dssp HHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTH
T ss_pred HHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhh
Confidence 4578999999986 68899998621 12 26778889999987664221 0 00 0 0111 12
Q ss_pred HHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHHH
Q 021614 208 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 255 (310)
Q Consensus 208 ~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~~ 255 (310)
.....+++.+ ++|||++|||++++.+.++++.| ||+|++||+++..
T Consensus 281 ~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~lad 327 (341)
T PF00724_consen 281 DLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLAD 327 (341)
T ss_dssp HHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-
T ss_pred hhhhhhhhhc--CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhC
Confidence 3445556655 79999999999999999999988 9999999999864
No 125
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.63 E-value=4.8e-07 Score=80.56 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~ 254 (310)
.+.++.+.+.|++.|.+......+...+ +.++.+.++.+.+ ++|++++|||++.+|+.+++..| |++|++||++++
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 4567888899999888775332122224 5788888888765 69999999999999999999998 999999999987
Q ss_pred H
Q 021614 255 S 255 (310)
Q Consensus 255 ~ 255 (310)
+
T Consensus 226 ~ 226 (233)
T PRK00748 226 G 226 (233)
T ss_pred C
Confidence 4
No 126
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.63 E-value=1.7e-06 Score=77.49 Aligned_cols=77 Identities=26% Similarity=0.366 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
.+.++.+.+.|++.|.+.+....... ....++.+.++.+.+ ++||++.|||++.+|+.+++.+||++|++|++++..
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~-~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~ 228 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLL-EGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKG 228 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCc-CCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 46688899999999998764211111 235677888887766 799999999999999999988999999999999763
No 127
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.60 E-value=5.8e-07 Score=79.94 Aligned_cols=77 Identities=26% Similarity=0.354 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
.+.++.+.+.|++.+++..........+ ..++.+.++.+.+ ++|++++|||++.+|+.+++..|||+|++||+++.+
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLSG-PNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 4567889999999998765322111123 4678888887764 799999999999999999999999999999999864
No 128
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.58 E-value=1.5e-06 Score=75.86 Aligned_cols=94 Identities=22% Similarity=0.237 Sum_probs=67.5
Q ss_pred HHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCC-CC-CcchHHHHHHHHHHhcCCceEEEecCCCCHH
Q 021614 157 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-DY-VPATIMALEEVVKATQGRIPVFLDGGVRRGT 233 (310)
Q Consensus 157 i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~-~~-~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (310)
++.+|+.. +..|.+ .+.+.++++.+.+.|+|+|.++....+.. .. .+..+..+.++.+.+ ++||++.||| +++
T Consensus 86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~ 161 (201)
T PRK07695 86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE 161 (201)
T ss_pred HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 34455544 344444 34678899999999999997654222211 11 123466677776654 6999999999 899
Q ss_pred HHHHHHHcCCCEEEEcHHHHH
Q 021614 234 DVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 234 dv~k~l~~GAd~V~ig~~~l~ 254 (310)
++.+++.+||++|+++|.+..
T Consensus 162 ~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 162 NTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHHHHHcCCCEEEEEHHHhc
Confidence 999999999999999999975
No 129
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.54 E-value=1.4e-06 Score=77.17 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=61.9
Q ss_pred cCCHHHHHHHHHcCCcEEEEecCC-CCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHH
Q 021614 173 VLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 251 (310)
Q Consensus 173 ~~~~~~a~~~~~aGad~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~ 251 (310)
..++..++++.++|+++|-..+.. |+. .+..+.+.+..+++.. ++|||++|||.+++|+.+++++|||+|++|++
T Consensus 131 ~dd~~~ar~l~~~G~~~vmPlg~pIGsg--~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~SA 206 (248)
T cd04728 131 TDDPVLAKRLEDAGCAAVMPLGSPIGSG--QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (248)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 367899999999999999442211 111 2455677777777654 79999999999999999999999999999999
Q ss_pred HHH
Q 021614 252 VVY 254 (310)
Q Consensus 252 ~l~ 254 (310)
+..
T Consensus 207 It~ 209 (248)
T cd04728 207 IAK 209 (248)
T ss_pred hcC
Confidence 864
No 130
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.54 E-value=1.2e-06 Score=78.05 Aligned_cols=76 Identities=25% Similarity=0.318 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
+.++.+.+.|++.+.+......+...+ +.++.+.++++.. ++|++++|||++.+|+.+++..|||+|++||.++.+
T Consensus 150 ~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 150 ELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred HHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 557889999999999876432222223 5688888887765 799999999999999999999999999999999864
No 131
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.53 E-value=8.9e-06 Score=71.37 Aligned_cols=195 Identities=15% Similarity=0.157 Sum_probs=104.0
Q ss_pred eecCcccCcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCC---CC---CHHHHHccCCCceeEEEEec----C
Q 021614 4 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS---TS---SVEEVASTGPGIRFFQLYVY----K 73 (310)
Q Consensus 4 ~l~g~~~~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~---~~---~~e~i~~~~~~~~~~ql~~~----~ 73 (310)
+|.|++|.+.++++---+. + ...+.++.+..|.-++.-... .. .-+.+.+.-+. .-+.+.++ .
T Consensus 1 ki~g~~f~SRL~lGTgky~---s---~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~-~~~~lLPNTaGc~ 73 (247)
T PF05690_consen 1 KIGGKEFRSRLILGTGKYP---S---PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDR-SGYTLLPNTAGCR 73 (247)
T ss_dssp -ETTEEES-SEEEE-STSS---S---HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTC-CTSEEEEE-TT-S
T ss_pred CcCCEEeecceEEecCCCC---C---HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcc-cCCEECCcCCCCC
Confidence 4789999999998754332 1 234666666777654322322 11 12233333221 11223332 3
Q ss_pred ChHHHHHHHHHHHHc-CCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcc
Q 021614 74 DRNVVAQLVRRAERA-GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 152 (310)
Q Consensus 74 d~~~~~~~i~~~~~~-G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (310)
+.++..+..+.++++ |-++|-+.|=.. ..++.| |+
T Consensus 74 tA~EAv~~A~laRe~~~t~wIKLEVi~D----------------------------------------~~~L~P--D~-- 109 (247)
T PF05690_consen 74 TAEEAVRTARLAREAFGTNWIKLEVIGD----------------------------------------DKTLLP--DP-- 109 (247)
T ss_dssp SHHHHHHHHHHHHHTTS-SEEEE--BS-----------------------------------------TTT--B---H--
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEEeCC----------------------------------------CCCcCC--Ch--
Confidence 556666666666665 556654422100 012221 22
Q ss_pred cHHHHHHHHhhCC-CCEEEEe-cCCHHHHHHHHHcCCcEEEEecCC-CCCCCCCcchHHHHHHHHHHhcCCceEEEecCC
Q 021614 153 SWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 229 (310)
Q Consensus 153 ~~~~i~~ir~~~~-~pv~vK~-~~~~~~a~~~~~aGad~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (310)
++.++..+..++ --.++-. ..++..++++.++|+..|---+.. |+. .|..+...+..+.+.. ++|||.++||
T Consensus 110 -~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg--~Gi~n~~~l~~i~~~~--~vPvIvDAGi 184 (247)
T PF05690_consen 110 -IETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSG--RGIQNPYNLRIIIERA--DVPVIVDAGI 184 (247)
T ss_dssp -HHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES--
T ss_pred -hHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccC--cCCCCHHHHHHHHHhc--CCcEEEeCCC
Confidence 233433333331 2222222 356778999999999999765432 211 1445667777777776 8999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 230 RRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 230 ~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.++.|+.+++++|||+|.+-+++..
T Consensus 185 G~pSdaa~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 185 GTPSDAAQAMELGADAVLVNTAIAK 209 (247)
T ss_dssp -SHHHHHHHHHTT-SEEEESHHHHT
T ss_pred CCHHHHHHHHHcCCceeehhhHHhc
Confidence 9999999999999999999998854
No 132
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.53 E-value=3.4e-06 Score=75.99 Aligned_cols=102 Identities=20% Similarity=0.313 Sum_probs=71.5
Q ss_pred HHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEecCC----------------C-------------------
Q 021614 154 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHG----------------A------------------- 197 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~~g----------------g------------------- 197 (310)
++.++.+|+.+++|+..|-. .++.+...+..+|||+|.+...- |
T Consensus 98 ~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~ 177 (254)
T PF00218_consen 98 LEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEA 177 (254)
T ss_dssp HHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHc
Confidence 47799999999999999974 68888999999999999875310 0
Q ss_pred ---------CCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 198 ---------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 198 ---------~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
|.+...........++...++.++.+++.+||.+.+|+.++...|+|+|.+|+++|.+
T Consensus 178 ~a~iiGINnRdL~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 178 GADIIGINNRDLKTFEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp T-SEEEEESBCTTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred CCCEEEEeCccccCcccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 0011111223333444444555788999999999999999999999999999999974
No 133
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.51 E-value=1.9e-06 Score=76.37 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=61.3
Q ss_pred cCCHHHHHHHHHcCCcEEEEecCC-CCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHH
Q 021614 173 VLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 251 (310)
Q Consensus 173 ~~~~~~a~~~~~aGad~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~ 251 (310)
..++..++++.++|+++|-..+.. |+. .+..+.+.+..+++.. ++|||++|||.+++|+.+++++|||+|+++++
T Consensus 131 ~~d~~~ak~l~~~G~~~vmPlg~pIGsg--~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~SA 206 (250)
T PRK00208 131 TDDPVLAKRLEEAGCAAVMPLGAPIGSG--LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (250)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 367899999999999999442111 111 1344566677776653 79999999999999999999999999999999
Q ss_pred HHH
Q 021614 252 VVY 254 (310)
Q Consensus 252 ~l~ 254 (310)
+..
T Consensus 207 Itk 209 (250)
T PRK00208 207 IAV 209 (250)
T ss_pred hhC
Confidence 874
No 134
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.51 E-value=3.2e-06 Score=73.90 Aligned_cols=91 Identities=26% Similarity=0.282 Sum_probs=62.9
Q ss_pred cHHHHHHHHhhCCCCEEEEec-----CCHHH----HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceE
Q 021614 153 SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 223 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~-----~~~~~----a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 223 (310)
.++.+.++++..+ ++.+|.+ .+.+. ++.+.++|+|+|..+.. .. ....+...+..+.+.++.++||
T Consensus 103 ~~~ei~~v~~~~~-g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG--~~--~~~at~~~v~~~~~~~~~~v~i 177 (203)
T cd00959 103 VYEEIAAVVEACG-GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTG--FG--PGGATVEDVKLMKEAVGGRVGV 177 (203)
T ss_pred HHHHHHHHHHhcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCC--CC--CCCCCHHHHHHHHHHhCCCceE
Confidence 4577888888764 3333333 34443 57789999999998632 11 1224444444444455457999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEE
Q 021614 224 FLDGGVRRGTDVFKALALGASGIFI 248 (310)
Q Consensus 224 ia~GGI~~~~dv~k~l~~GAd~V~i 248 (310)
.++|||++.+++.+.+.+||+.++.
T Consensus 178 k~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 178 KAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred EEeCCCCCHHHHHHHHHhChhhccC
Confidence 9999999999999999999988653
No 135
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.50 E-value=7.2e-07 Score=84.45 Aligned_cols=97 Identities=21% Similarity=0.316 Sum_probs=74.3
Q ss_pred cCCcccHHHHHHHHhhCCCCEEEEecCC----HHHHHHHHHcCCcEEEEecCCCCCCC-CCcchHHHHHHHHHHhcCCce
Q 021614 148 IDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIP 222 (310)
Q Consensus 148 ~~~~~~~~~i~~ir~~~~~pv~vK~~~~----~~~a~~~~~aGad~I~v~~~gg~~~~-~~~~~~~~l~~i~~~~~~~ip 222 (310)
.++++..+.++++|+.. |.+|...+ .+.++.+.++|+|.|.++++...+.+ .+...+..+.++.+.+ ++|
T Consensus 116 ~~p~l~~~ii~~vr~a~---VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IP 190 (369)
T TIGR01304 116 LKPELLGERIAEVRDSG---VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVP 190 (369)
T ss_pred cChHHHHHHHHHHHhcc---eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCC
Confidence 45666777888888853 88888754 36689999999999999876433322 1223456677766665 799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 223 VFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 223 via~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
||+ |+|.+.+++.+++.+|||+|++|+
T Consensus 191 VI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 191 VIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred EEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 998 999999999999999999999885
No 136
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.49 E-value=2.5e-06 Score=76.27 Aligned_cols=100 Identities=27% Similarity=0.309 Sum_probs=77.7
Q ss_pred cHHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEecC---------------CCC---------------CC-
Q 021614 153 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH---------------GAR---------------QL- 200 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~~---------------gg~---------------~~- 200 (310)
..+.|+++.+.++.||.+.+. .+.|+++.+.++|++.+++... +.+ .+
T Consensus 64 n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~ 143 (234)
T PRK13587 64 EFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWE 143 (234)
T ss_pred hHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCc
Confidence 467899999988999999864 6899999999999999988531 100 00
Q ss_pred -----------------------------CC--CcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 201 -----------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 201 -----------------------------~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
++ ..+.++.+.++.+.. ++|++++|||++.+|+.+++.+|+++|.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 144 EDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 00 113455566665543 799999999999999999999999999999
Q ss_pred HHHHH
Q 021614 250 RPVVY 254 (310)
Q Consensus 250 ~~~l~ 254 (310)
++++.
T Consensus 222 ~a~~~ 226 (234)
T PRK13587 222 KAAHQ 226 (234)
T ss_pred HHHHh
Confidence 99875
No 137
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.47 E-value=2.2e-06 Score=76.40 Aligned_cols=75 Identities=28% Similarity=0.251 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHH-HHHcCCCEEEEcHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK-ALALGASGIFIGRPVV 253 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k-~l~~GAd~V~ig~~~l 253 (310)
.+.++.+.++|+|.|.+++....+...+ ..++.+.++++.+ ++||+++|||++.+|+.+ ....|||+|++|++|-
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 4668999999999999987432211122 4677788887765 799999999999999999 5558999999999884
No 138
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.45 E-value=1.4e-05 Score=69.76 Aligned_cols=48 Identities=25% Similarity=0.303 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhc---CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 206 TIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 206 ~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.++.+.++++... ..+|+++.|||+ .+++.+++..|||.+.+||+++.
T Consensus 148 ~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 148 TLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 3344444544332 237999999996 79999999999999999999874
No 139
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.45 E-value=7.5e-07 Score=80.77 Aligned_cols=77 Identities=23% Similarity=0.261 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHH-HcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l-~~GAd~V~ig~~~l~ 254 (310)
.+.++.+.+.|++.+.+.+....+...+ +.++.+.++.+.+ ++|||++|||++.+|+.+++ ..|+|+|.+|++|.|
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence 3567889999999999876432222234 4788888887765 79999999999999999999 799999999999988
Q ss_pred H
Q 021614 255 S 255 (310)
Q Consensus 255 ~ 255 (310)
.
T Consensus 232 ~ 232 (258)
T PRK01033 232 K 232 (258)
T ss_pred C
Confidence 3
No 140
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.45 E-value=2.6e-06 Score=74.05 Aligned_cols=96 Identities=21% Similarity=0.129 Sum_probs=67.1
Q ss_pred HHHHHHHhhCCCCEEE--EecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCH
Q 021614 155 KDVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 232 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~v--K~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (310)
+.++.+++ .++++++ =...|++++..+.+.|+|++.+......+..+.+...+.+.++.+. .++|++++|||+ .
T Consensus 94 ~~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~GGI~-~ 169 (202)
T cd04726 94 KAVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL--LGVKVAVAGGIT-P 169 (202)
T ss_pred HHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh--cCCCEEEECCcC-H
Confidence 34555554 4677664 3456788887788899999988431111111123445666666543 379999999996 9
Q ss_pred HHHHHHHHcCCCEEEEcHHHHH
Q 021614 233 TDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 233 ~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+++.+++..|||++.+||+++.
T Consensus 170 ~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 170 DTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred HHHHHHHhcCCCEEEEeehhcC
Confidence 9999999999999999999764
No 141
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.41 E-value=5.8e-06 Score=72.12 Aligned_cols=117 Identities=26% Similarity=0.351 Sum_probs=83.9
Q ss_pred cHHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEec-------------------------------------
Q 021614 153 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN------------------------------------- 194 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~------------------------------------- 194 (310)
..+.++++.+.+.+|+.|.+. .+.++++.+..+|||-|.+..
T Consensus 62 ~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~ 141 (256)
T COG0107 62 MLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGW 141 (256)
T ss_pred HHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCc
Confidence 357788888889999999864 689999999999999988742
Q ss_pred -----CCCCC---C------------------------CCCc--chHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Q 021614 195 -----HGARQ---L------------------------DYVP--ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 240 (310)
Q Consensus 195 -----~gg~~---~------------------------~~~~--~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~ 240 (310)
+||+. + |+.. =.+..+..+++.+ ++|||+|||..+++|+.+++.
T Consensus 142 ~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf~ 219 (256)
T COG0107 142 YEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAV--NIPVIASGGAGKPEHFVEAFT 219 (256)
T ss_pred EEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHHH
Confidence 11110 0 0000 1234445555554 799999999999999999999
Q ss_pred cC-CCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCC
Q 021614 241 LG-ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 284 (310)
Q Consensus 241 ~G-Ad~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~ 284 (310)
.| ||++..++-|.+. + .-..|++++|...|.
T Consensus 220 ~~~adAaLAAsiFH~~-----~--------~~i~evK~yL~~~gi 251 (256)
T COG0107 220 EGKADAALAASIFHFG-----E--------ITIGEVKEYLAEQGI 251 (256)
T ss_pred hcCccHHHhhhhhhcC-----c--------ccHHHHHHHHHHcCC
Confidence 88 9999999888764 2 223566667766665
No 142
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.40 E-value=3.5e-06 Score=73.57 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=66.8
Q ss_pred HHHHHHHhhCCCCEEEEec--CC-HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCC
Q 021614 155 KDVKWLQTITKLPILVKGV--LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 231 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~--~~-~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (310)
+.++.+++ .++++++-.. .+ .++++.+.+.|+|+|.+......+ ...+..+..+.++++.+. ..++.++||| +
T Consensus 93 ~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~-~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~ 168 (206)
T TIGR03128 93 GAVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQ-AKGQNPFEDLQTILKLVK-EARVAVAGGI-N 168 (206)
T ss_pred HHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcc-cCCCCCHHHHHHHHHhcC-CCcEEEECCc-C
Confidence 44555544 5888887642 22 478888899999999875321111 122344556666665543 4677789999 6
Q ss_pred HHHHHHHHHcCCCEEEEcHHHHH
Q 021614 232 GTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 232 ~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+++.+++..|||.+.+||+++.
T Consensus 169 ~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 169 LDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred HHHHHHHHHcCCCEEEEeehhcC
Confidence 89999999999999999999764
No 143
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.37 E-value=4.2e-06 Score=75.61 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCcEEEEecCC--CCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHc-CCCEEEEcHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHG--ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPV 252 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~g--g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~-GAd~V~ig~~~ 252 (310)
.+.++.+.+.|++.+.++... |+. .+ ..++.+.++.+.. ++||+++|||++.+|+.+++.. ||++|++|+++
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~--~g-~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al 230 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTK--NG-YDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIF 230 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCC--CC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHH
Confidence 356788999999999886633 221 12 3577788877765 7999999999999999999975 99999999999
Q ss_pred HHH
Q 021614 253 VYS 255 (310)
Q Consensus 253 l~~ 255 (310)
.++
T Consensus 231 ~~~ 233 (253)
T PRK02083 231 HFG 233 (253)
T ss_pred HcC
Confidence 864
No 144
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.37 E-value=3.4e-05 Score=68.25 Aligned_cols=138 Identities=23% Similarity=0.242 Sum_probs=91.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
..|...+.+.++++++.|++.+ |+|. +... ++ | +-.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~l--H~Dv---------mDG~------------------------------Fv-p--n~t 43 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVV--HFDV---------MDNH------------------------------YV-P--NLT 43 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEec---------ccCc------------------------------cc-C--ccc
Confidence 3577778888999999999876 4442 0001 11 0 122
Q ss_pred ccHHHHHHHHhh-CCCCEEEEec-CCHH-HHHHHHHcCCcEEEEecC---------------C---C------CC-----
Q 021614 152 LSWKDVKWLQTI-TKLPILVKGV-LTAE-DARIAVQAGAAGIIVSNH---------------G---A------RQ----- 199 (310)
Q Consensus 152 ~~~~~i~~ir~~-~~~pv~vK~~-~~~~-~a~~~~~aGad~I~v~~~---------------g---g------~~----- 199 (310)
+..+.++++|+. ++.|+-+=+- .+++ .+....++|+|.|.++-- | | +.
T Consensus 44 fg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~ 123 (220)
T PRK08883 44 FGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLE 123 (220)
T ss_pred cCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHH
Confidence 345779999887 6788766543 4454 467888899999988631 0 0 10
Q ss_pred -----CC-----------CC----cchHHHHHHHHHHhc---CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 200 -----LD-----------YV----PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 200 -----~~-----------~~----~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.| ++ +...+.+.++++... .++||.++|||. .+++.+..++|||.+.+||+++.
T Consensus 124 ~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~ 200 (220)
T PRK08883 124 YIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFG 200 (220)
T ss_pred HHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 01 12 233445555554432 148999999999 89999999999999999999753
No 145
>PLN02411 12-oxophytodienoate reductase
Probab=98.37 E-value=1.2e-05 Score=77.24 Aligned_cols=101 Identities=13% Similarity=0.018 Sum_probs=67.1
Q ss_pred ccHHHHHHHHhhCC-CCEEEEecCC-----------H----HHHHHHHHc------CCcEEEEecCCCC---CCC---CC
Q 021614 152 LSWKDVKWLQTITK-LPILVKGVLT-----------A----EDARIAVQA------GAAGIIVSNHGAR---QLD---YV 203 (310)
Q Consensus 152 ~~~~~i~~ir~~~~-~pv~vK~~~~-----------~----~~a~~~~~a------Gad~I~v~~~gg~---~~~---~~ 203 (310)
+..|+|+.||+.++ -.|.+|+... . +.++.+.+. |+|+|.++..... ... .+
T Consensus 217 F~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~ 296 (391)
T PLN02411 217 FLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHG 296 (391)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccC
Confidence 56799999999973 2488887631 1 123444432 5999999863210 000 01
Q ss_pred cc-hH-HHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHHH
Q 021614 204 PA-TI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 255 (310)
Q Consensus 204 ~~-~~-~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~~ 255 (310)
+. .. ....++++.+ ++|||++|+| +.+++.++++.| ||.|.+||+++..
T Consensus 297 ~~~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iad 348 (391)
T PLN02411 297 SEEEEAQLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFISN 348 (391)
T ss_pred CccchhHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHhC
Confidence 11 11 2335566665 6899999999 579999999999 9999999999863
No 146
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.35 E-value=4.2e-05 Score=65.67 Aligned_cols=172 Identities=22% Similarity=0.128 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccC-C--CceeEEEEecCC----hHHHHHHHHHHHHcCCcEEEEeeCCC
Q 021614 28 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-P--GIRFFQLYVYKD----RNVVAQLVRRAERAGFKAIALTVDTP 100 (310)
Q Consensus 28 ~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~-~--~~~~~ql~~~~d----~~~~~~~i~~~~~~G~~~i~i~~~~p 100 (310)
+.-..+.+.+.+.|+...+... ..++.+.+.. . -+.++++.. .. .+...+.++++.+.|++++.+...
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~-~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~-- 87 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGF-PTGLTTTEVKVAEVEEAIDLGADEIDVVIN-- 87 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecC-CCCCCcHHHHHHHHHHHHHcCCCEEEEecc--
Confidence 3445688888888876554332 2233333322 2 244556652 33 577778889999999999987422
Q ss_pred CCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhh--CCCCEEEEecC----
Q 021614 101 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI--TKLPILVKGVL---- 174 (310)
Q Consensus 101 ~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~--~~~pv~vK~~~---- 174 (310)
.. ..+..+.+...+.++++++. .++|+++....
T Consensus 88 ~~-----------------------------------------~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~ 126 (201)
T cd00945 88 IG-----------------------------------------SLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLK 126 (201)
T ss_pred HH-----------------------------------------HHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCC
Confidence 10 00000112234667888887 48999998862
Q ss_pred CHHHH----HHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 175 TAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 175 ~~~~a----~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
+.+.. +.+.+.|+|+|..+.... .+...+..+.++++..+.++|+++.||+.+.+++..++.+||+++++|
T Consensus 127 ~~~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 127 TADEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 44443 345689999999765211 112345566666655543689999999999999999999999999875
No 147
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.35 E-value=5e-06 Score=74.04 Aligned_cols=99 Identities=27% Similarity=0.413 Sum_probs=75.0
Q ss_pred HHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEec----------------------------CC-------C
Q 021614 154 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN----------------------------HG-------A 197 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~----------------------------~g-------g 197 (310)
++.|+++.+.+..|+.+.+. .+.++++.+.++|++.++++. ++ .
T Consensus 62 ~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw 141 (229)
T PF00977_consen 62 LELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGW 141 (229)
T ss_dssp HHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTT
T ss_pred HHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCc
Confidence 57899999999999999964 689999999999999999863 01 0
Q ss_pred CC-------------------------C--CC--CcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 021614 198 RQ-------------------------L--DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 248 (310)
Q Consensus 198 ~~-------------------------~--~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~i 248 (310)
.. . ++ ..+.++.+.++++.. ++|++++|||++.+|+.++...|+++|.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 142 QESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp TEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 00 0 11 124567777777666 79999999999999999999999999999
Q ss_pred cHHHHH
Q 021614 249 GRPVVY 254 (310)
Q Consensus 249 g~~~l~ 254 (310)
|++|+.
T Consensus 220 g~al~~ 225 (229)
T PF00977_consen 220 GSALHE 225 (229)
T ss_dssp SHHHHT
T ss_pred ehHhhC
Confidence 999965
No 148
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.31 E-value=3.2e-06 Score=80.18 Aligned_cols=99 Identities=19% Similarity=0.259 Sum_probs=72.1
Q ss_pred cCCcccHHHHHHHHhhCCCCEEEEec--CCHHHHHHHHHcCCcEEEEecCCCCCCCCCcc-hHHHHHHHHHHhcCCceEE
Q 021614 148 IDRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVF 224 (310)
Q Consensus 148 ~~~~~~~~~i~~ir~~~~~pv~vK~~--~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi 224 (310)
.+|+...+.++.+++. .+++.++.. ...+.++.+.++|+|.|.++++...+.+.+.. .+..+.++.+.. ++|||
T Consensus 115 ~~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVI 191 (368)
T PRK08649 115 IKPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVI 191 (368)
T ss_pred CCHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEE
Confidence 4566667888888885 455544442 23567899999999999998754333222222 355566655554 79999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 225 LDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 225 a~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
+ |+|.+.+++.+++.+|||+|++|+
T Consensus 192 a-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 192 V-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred E-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 9 999999999999999999999996
No 149
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.31 E-value=3.8e-05 Score=68.73 Aligned_cols=101 Identities=25% Similarity=0.256 Sum_probs=72.8
Q ss_pred HHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEecCC----------------C-------------------
Q 021614 154 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHG----------------A------------------- 197 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~~g----------------g------------------- 197 (310)
++.++.+++.+++||+.|.. .++.+...+..+|||+|.+...- |
T Consensus 91 ~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ 170 (247)
T PRK13957 91 LEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDC 170 (247)
T ss_pred HHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhC
Confidence 57788898888999999975 67888888888899998775310 0
Q ss_pred ---------CCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 198 ---------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 198 ---------~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
|.+...........++...++.+..+|+.+||++++|+.+.... +|+|.+|+.++.+
T Consensus 171 ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 171 GAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred CCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 00111112233334455555557789999999999999887665 9999999999874
No 150
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.30 E-value=1.5e-05 Score=69.73 Aligned_cols=79 Identities=27% Similarity=0.325 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHcCCcEEEEecCCCCCCC---CCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 174 LTAEDARIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 174 ~~~~~a~~~~~aGad~I~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
.|.+++..+.+.|+|+|.++....+... ..+..++.+.++++.. ..+||++.||| +.+++.+++.+||++|.+|+
T Consensus 112 ~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs 189 (212)
T PRK00043 112 HTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-GDIPIVAIGGI-TPENAPEVLEAGADGVAVVS 189 (212)
T ss_pred CCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEeH
Confidence 4788999999999999987642211111 1112367777776655 24999999999 69999999999999999999
Q ss_pred HHHH
Q 021614 251 PVVY 254 (310)
Q Consensus 251 ~~l~ 254 (310)
.++.
T Consensus 190 ~i~~ 193 (212)
T PRK00043 190 AITG 193 (212)
T ss_pred Hhhc
Confidence 9764
No 151
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.29 E-value=1.7e-05 Score=70.17 Aligned_cols=101 Identities=28% Similarity=0.430 Sum_probs=79.8
Q ss_pred cHHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEec---------------CCCC------------------
Q 021614 153 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN---------------HGAR------------------ 198 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~---------------~gg~------------------ 198 (310)
+.+.++++.+.++.||-+.+. .+.+.++.+.++|++.++++. +|++
T Consensus 63 n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~ 142 (241)
T COG0106 63 NLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQ 142 (241)
T ss_pred cHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcccccccc
Confidence 357799999999999988864 688899999999999998864 1110
Q ss_pred ---C------------------------CCC--CcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHc-CCCEEEE
Q 021614 199 ---Q------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFI 248 (310)
Q Consensus 199 ---~------------------------~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~-GAd~V~i 248 (310)
. .|+ .-+.++.+.++.+.+ ++|++++|||+|-+|+..+-.+ |.++|.+
T Consensus 143 e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIv 220 (241)
T COG0106 143 EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIV 220 (241)
T ss_pred ccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEE
Confidence 0 011 135677778887776 8999999999999999888888 8999999
Q ss_pred cHHHHHH
Q 021614 249 GRPVVYS 255 (310)
Q Consensus 249 g~~~l~~ 255 (310)
||+++.+
T Consensus 221 G~ALy~g 227 (241)
T COG0106 221 GRALYEG 227 (241)
T ss_pred ehHHhcC
Confidence 9999863
No 152
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.28 E-value=1.2e-05 Score=78.33 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=66.4
Q ss_pred HHHHHHHhhCCCCEEEEe-c-CC-HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCC
Q 021614 155 KDVKWLQTITKLPILVKG-V-LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 231 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~-~-~~-~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (310)
+.++.+++ .+.++++.. . .+ .+.++.+.+.|+|+|.++.....+. ..+..++.+.++++.. ++||++.||| +
T Consensus 98 ~~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~-~~~~~~~~l~~l~~~~--~iPI~a~GGI-~ 172 (430)
T PRK07028 98 DAVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVHVGIDQQM-LGKDPLELLKEVSEEV--SIPIAVAGGL-D 172 (430)
T ss_pred HHHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchhh-cCCChHHHHHHHHhhC--CCcEEEECCC-C
Confidence 34455554 577777642 2 23 4667888999999997754211111 1233456666666554 5999999999 5
Q ss_pred HHHHHHHHHcCCCEEEEcHHHHH
Q 021614 232 GTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 232 ~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+++.++++.|||++.+||.++.
T Consensus 173 ~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 173 AETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHHHHHHHHcCCCEEEEChHHcC
Confidence 89999999999999999999864
No 153
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.27 E-value=6e-06 Score=74.68 Aligned_cols=77 Identities=21% Similarity=0.297 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~ 254 (310)
.+.++.+.++|+|.|.++.... ........+..+.++++.. ++||+++|||++.+|+.+++..| ||+|++|+++..
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~-~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDK-DGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCc-ccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 3567899999999999975321 1111235677788887765 79999999999999999999988 999999999875
Q ss_pred H
Q 021614 255 S 255 (310)
Q Consensus 255 ~ 255 (310)
+
T Consensus 235 ~ 235 (254)
T TIGR00735 235 R 235 (254)
T ss_pred C
Confidence 3
No 154
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.26 E-value=1.5e-05 Score=71.13 Aligned_cols=101 Identities=28% Similarity=0.334 Sum_probs=75.4
Q ss_pred cHHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEecCC-------------CCC-----CC---C--------
Q 021614 153 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHG-------------ARQ-----LD---Y-------- 202 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~~g-------------g~~-----~~---~-------- 202 (310)
..+.++++.+.+..|+.+.+. .+.++++.+.++|++.+++.... +.+ +| +
T Consensus 66 n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~ 145 (233)
T cd04723 66 NDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDF 145 (233)
T ss_pred cHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeeccccCc
Confidence 357899998888899998865 67899999999999999875411 000 00 0
Q ss_pred ----------------------------CcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 203 ----------------------------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 203 ----------------------------~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
..+..+.+.++.+.. .+|++++|||++.+|+.+++.+||++|.+|++++.
T Consensus 146 ~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 146 IGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHD 223 (233)
T ss_pred CCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence 012233344444433 69999999999999999999999999999999876
Q ss_pred H
Q 021614 255 S 255 (310)
Q Consensus 255 ~ 255 (310)
+
T Consensus 224 g 224 (233)
T cd04723 224 G 224 (233)
T ss_pred C
Confidence 4
No 155
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.22 E-value=1.4e-05 Score=71.76 Aligned_cols=76 Identities=24% Similarity=0.275 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.++.+.++|+|.+.+....+. ....+..+..+.++++.+ ++||+++|||++.+|+.+++..||++|++|+.++.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITAS-SEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCcc-cccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 46688899999999988764321 112345677788887766 69999999999999999999999999999998875
No 156
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.19 E-value=1.8e-05 Score=71.47 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.++.+.+.|++.+.+....... ......++.+.++.+.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASS-EGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 467888889999999998754321 12356788888888776 79999999999999999999999999999998875
No 157
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=98.17 E-value=0.00021 Score=63.64 Aligned_cols=154 Identities=19% Similarity=0.174 Sum_probs=98.5
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
..|+..+.+.++++++.|++.+ |+|.=- ..| + | +-.
T Consensus 15 ~~d~~~l~~~~~~l~~~~~~~~--H~DimD---------g~f------------------------------v-p--n~~ 50 (228)
T PTZ00170 15 AADFSKLADEAQDVLSGGADWL--HVDVMD---------GHF------------------------------V-P--NLS 50 (228)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEeccc---------Ccc------------------------------C-C--CcC
Confidence 3577788889999999999875 445200 001 1 0 112
Q ss_pred ccHHHHHHHHhhC-CCCEEEEec-CCHH-HHHHHHHcCCcEEEEecCCCCC-----------------------------
Q 021614 152 LSWKDVKWLQTIT-KLPILVKGV-LTAE-DARIAVQAGAAGIIVSNHGARQ----------------------------- 199 (310)
Q Consensus 152 ~~~~~i~~ir~~~-~~pv~vK~~-~~~~-~a~~~~~aGad~I~v~~~gg~~----------------------------- 199 (310)
+..+.++++|+.+ ++|+-+|.- .+++ .++.+.++|+|.|.++..++..
T Consensus 51 ~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l 130 (228)
T PTZ00170 51 FGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVL 130 (228)
T ss_pred cCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHH
Confidence 2347799999887 899999976 5555 4688899999999987532100
Q ss_pred ---C-----------------CCC---cchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHh
Q 021614 200 ---L-----------------DYV---PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 256 (310)
Q Consensus 200 ---~-----------------~~~---~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~ 256 (310)
. ++. +..+..+.++++.. ..+.|.++|||+ .+.+.++..+|||.+.+||+++.+
T Consensus 131 ~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~-~~~~I~VdGGI~-~~ti~~~~~aGad~iVvGsaI~~a- 207 (228)
T PTZ00170 131 FPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRY-PHLNIQVDGGIN-LETIDIAADAGANVIVAGSSIFKA- 207 (228)
T ss_pred HHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhc-ccCeEEECCCCC-HHHHHHHHHcCCCEEEEchHHhCC-
Confidence 0 000 11123333333332 247899999999 678889999999999999996532
Q ss_pred hhccHHHHHHHHHHHHHHHHH
Q 021614 257 AAEGEKGVRRVLEMLREEFEL 277 (310)
Q Consensus 257 ~~~G~~~v~~~l~~l~~~l~~ 277 (310)
+...+.++.+++.++.
T Consensus 208 -----~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 208 -----KDRKQAIELLRESVQK 223 (228)
T ss_pred -----CCHHHHHHHHHHHHHH
Confidence 1233445566555544
No 158
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.13 E-value=1.7e-05 Score=71.67 Aligned_cols=75 Identities=25% Similarity=0.281 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+.++...+.|+|.+.+.+..+-. ......++.+.++.+.+ ++||+++|||++.+|+.+++.+||+.|++|+.++.
T Consensus 34 ~~a~~~~~~G~~~l~v~Dl~~~~-~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 34 ELAQRYDEEGADELVFLDITASS-EGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK 108 (254)
T ss_pred HHHHHHHHcCCCEEEEEcCCccc-ccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 66888899999999998743211 12345677888887776 79999999999999999999999999999998865
No 159
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.12 E-value=1.7e-05 Score=70.41 Aligned_cols=78 Identities=21% Similarity=0.364 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHcCCcEEEEecCC-CCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHH
Q 021614 174 LTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 174 ~~~~~a~~~~~aGad~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
.++..++++.++||.+|---+.. |+. .|..+...|..+.+.. ++||+.++||.+++|+.+++++|||+|.+.+++
T Consensus 146 ~D~v~a~rLed~Gc~aVMPlgsPIGSg--~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaI 221 (267)
T CHL00162 146 ADPMLAKHLEDIGCATVMPLGSPIGSG--QGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVLLNTAV 221 (267)
T ss_pred CCHHHHHHHHHcCCeEEeeccCcccCC--CCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEeeccee
Confidence 45778999999999999754432 211 1445666777666654 799999999999999999999999999999988
Q ss_pred HHH
Q 021614 253 VYS 255 (310)
Q Consensus 253 l~~ 255 (310)
..+
T Consensus 222 akA 224 (267)
T CHL00162 222 AQA 224 (267)
T ss_pred ecC
Confidence 753
No 160
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.09 E-value=3.5e-05 Score=69.11 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=74.2
Q ss_pred cHHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEecC--------------C-----------C---------
Q 021614 153 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--------------G-----------A--------- 197 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~~--------------g-----------g--------- 197 (310)
..+.++++.+.+ .|+.+.+. .+.++++.+.++|+|.+++... + |
T Consensus 62 n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~ 140 (241)
T PRK14114 62 NLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLA 140 (241)
T ss_pred hHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCee
Confidence 357788888877 78888764 6789999999999999877530 0 0
Q ss_pred -CC----------------------C--CC--CcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHc-----C-CC
Q 021614 198 -RQ----------------------L--DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-AS 244 (310)
Q Consensus 198 -~~----------------------~--~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~-----G-Ad 244 (310)
+. . ++ .-+.++.+.++.+.. ++||+++|||++.+|+.++..+ | ++
T Consensus 141 ~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~ 218 (241)
T PRK14114 141 EEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLK 218 (241)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEE
Confidence 00 0 01 124566666666554 7999999999999999998887 6 99
Q ss_pred EEEEcHHHHHH
Q 021614 245 GIFIGRPVVYS 255 (310)
Q Consensus 245 ~V~ig~~~l~~ 255 (310)
+|.+|++++.+
T Consensus 219 gvivg~Al~~g 229 (241)
T PRK14114 219 GVIVGRAFLEG 229 (241)
T ss_pred EEEEehHHHCC
Confidence 99999998753
No 161
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.09 E-value=5.1e-05 Score=69.15 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=68.7
Q ss_pred HHHHHHHHhhCC--CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhc---CCceEEEecC
Q 021614 154 WKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGG 228 (310)
Q Consensus 154 ~~~i~~ir~~~~--~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GG 228 (310)
.+.++++|+..+ .+|.+ .+.+.|++..+.++|+|.|.+.|- +.+.+.++.+..+ .++.+.++||
T Consensus 169 ~~~v~~~k~~~p~~~~I~V-Ev~tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~~ieAsGg 237 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEI-ECESLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHVLLEASGN 237 (273)
T ss_pred HHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECC
Confidence 466888888764 44444 667999999999999999987652 3445555544332 3678999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 229 VRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 229 I~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
| +++.+.++..+|+|.+.+|++..
T Consensus 238 I-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 238 I-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhc
Confidence 9 89999999999999999999765
No 162
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.08 E-value=3.9e-05 Score=68.25 Aligned_cols=102 Identities=26% Similarity=0.309 Sum_probs=72.6
Q ss_pred cHHHHHHHHhhCCCCEEEEe-cCCHHHHHHHHHcCCcEEEEecCC-------------CC---CCC--------------
Q 021614 153 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHG-------------AR---QLD-------------- 201 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~~aGad~I~v~~~g-------------g~---~~~-------------- 201 (310)
..+.++++++.++.||++.+ +.+.++++.+.+.|++.+++.... +. ++|
T Consensus 61 n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~ 140 (228)
T PRK04128 61 NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEE 140 (228)
T ss_pred hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEc
Confidence 35778888888899999885 578999999999999999875310 00 000
Q ss_pred CCcchHHHHHH------------------------HHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 202 YVPATIMALEE------------------------VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 202 ~~~~~~~~l~~------------------------i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
......+.+.+ +.+.. .++|||++|||++.+|+.++..+|+++|.+|++|+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 141 SSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 01111122211 11221 3689999999999999999999999999999999764
No 163
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.08 E-value=0.00018 Score=64.48 Aligned_cols=170 Identities=19% Similarity=0.237 Sum_probs=103.1
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcch---HHhhhccCCCCcccccccccccccccccccchhhHHHh--hh
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE---ADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV--AG 146 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 146 (310)
..|+..+ .+.-++.|+.+|-|-.+.+.+.... +.+|.....|- + ++-..++..++..+-..|+...+ ..
T Consensus 65 d~dp~~i---a~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~Pv-L--~KDFiiD~yQI~~Ar~~GADavLLI~~ 138 (254)
T COG0134 65 DFDPVEI---AKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLPV-L--RKDFIIDPYQIYEARAAGADAVLLIVA 138 (254)
T ss_pred cCCHHHH---HHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCCe-e--eccCCCCHHHHHHHHHcCcccHHHHHH
Confidence 3455443 4445678999999988877764333 44556666662 1 11111222222222112222211 11
Q ss_pred ccCCcccHHHHHHHHh---hCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceE
Q 021614 147 QIDRSLSWKDVKWLQT---ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 223 (310)
Q Consensus 147 ~~~~~~~~~~i~~ir~---~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 223 (310)
..+ -+.++++-+ ..+.-+++ .+-+.++++++.++|++.|=+.|+.-+.+ ....+...++....+.+.-+
T Consensus 139 ~L~----~~~l~el~~~A~~LGm~~LV-EVh~~eEl~rAl~~ga~iIGINnRdL~tf---~vdl~~t~~la~~~p~~~~~ 210 (254)
T COG0134 139 ALD----DEQLEELVDRAHELGMEVLV-EVHNEEELERALKLGAKIIGINNRDLTTL---EVDLETTEKLAPLIPKDVIL 210 (254)
T ss_pred hcC----HHHHHHHHHHHHHcCCeeEE-EECCHHHHHHHHhCCCCEEEEeCCCcchh---eecHHHHHHHHhhCCCCcEE
Confidence 111 122333333 34555554 45688999999999999998877543322 12233344445555567889
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 224 FLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 224 ia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
|+.+||++++|+.+....|||++.||+++|..
T Consensus 211 IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 211 ISESGISTPEDVRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred EecCCCCCHHHHHHHHHcCCCEEEecHHHhcC
Confidence 99999999999999999999999999999974
No 164
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.07 E-value=6.1e-05 Score=64.52 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHcCCcEEEEecCCCCC-CCC--CcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 174 LTAEDARIAVQAGAAGIIVSNHGARQ-LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 174 ~~~~~a~~~~~aGad~I~v~~~gg~~-~~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
.+.+++..+.+.|+|+|.++....+. ... .+..++.+.++++.. ++||++.|||. .+++.+++.+||+++.+|+
T Consensus 103 ~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 103 HSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEeh
Confidence 56788999999999999886532111 111 344566777766543 79999999995 7999999999999999999
Q ss_pred HHHH
Q 021614 251 PVVY 254 (310)
Q Consensus 251 ~~l~ 254 (310)
.++.
T Consensus 180 ~i~~ 183 (196)
T cd00564 180 AITG 183 (196)
T ss_pred Hhhc
Confidence 9764
No 165
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.07 E-value=0.00011 Score=66.92 Aligned_cols=87 Identities=25% Similarity=0.363 Sum_probs=60.8
Q ss_pred HHHHHhhCCCCEEEEe---------cCCHHH----HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceE
Q 021614 157 VKWLQTITKLPILVKG---------VLTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 223 (310)
Q Consensus 157 i~~ir~~~~~pv~vK~---------~~~~~~----a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 223 (310)
+.+.+..+++|+++-. ..+.+. ++.+.+.|||+|..+-. ...+.+.++.+.. ++||
T Consensus 131 v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~---------~~~~~l~~~~~~~--~ipV 199 (267)
T PRK07226 131 VAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYT---------GDPESFREVVEGC--PVPV 199 (267)
T ss_pred HHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCC---------CCHHHHHHHHHhC--CCCE
Confidence 3344445688887631 123333 57788999999987521 1245566655443 6999
Q ss_pred EEecCCC--CHHHHHHHH----HcCCCEEEEcHHHHH
Q 021614 224 FLDGGVR--RGTDVFKAL----ALGASGIFIGRPVVY 254 (310)
Q Consensus 224 ia~GGI~--~~~dv~k~l----~~GAd~V~ig~~~l~ 254 (310)
+++|||+ |.+++.+.+ .+||+++.+||.++.
T Consensus 200 ~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 200 VIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 9999999 777777664 899999999999875
No 166
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=98.06 E-value=0.00072 Score=59.47 Aligned_cols=174 Identities=18% Similarity=0.166 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHcCCeeEeCCCC------CC-CH----HHHHccCCCceeEEEEecCChHHHHHHHHHHHHcCCcEEEEee
Q 021614 29 GEYATARAASAAGTIMTLSSWS------TS-SV----EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 97 (310)
Q Consensus 29 ~~~~la~~a~~~g~~~~~~~~~------~~-~~----e~i~~~~~~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~ 97 (310)
+|..-.+.+.++|.--+++|.- .. .+ .++++..+++..+|++ ..|.+.+.+..+.+.+.+- .+.|-+
T Consensus 7 a~~~ei~~~~~~~~i~GvTTNPsll~k~~~~~~~~~~~~i~~~~~~~v~~qv~-~~~~e~~i~~a~~l~~~~~-~~~iKI 84 (211)
T cd00956 7 ADLEEIKKASETGLLDGVTTNPSLIAKSGRIDFEAVLKEICEIIDGPVSAQVV-STDAEGMVAEARKLASLGG-NVVVKI 84 (211)
T ss_pred CCHHHHHHHHhcCCcCccccCHHHHHhcCCcCHHHHHHHHHHhcCCCEEEEEE-eCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 3556666677777655665531 11 22 3344444557788997 5677777777777665522 233322
Q ss_pred CCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCHH
Q 021614 98 DTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE 177 (310)
Q Consensus 98 ~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~~ 177 (310)
. .. . ...+.++.+++. ++++-+-.+.+.+
T Consensus 85 P--~T-----------------------------------~-------------~gl~ai~~L~~~-gi~v~~T~V~s~~ 113 (211)
T cd00956 85 P--VT-----------------------------------E-------------DGLKAIKKLSEE-GIKTNVTAIFSAA 113 (211)
T ss_pred c--Cc-----------------------------------H-------------hHHHHHHHHHHc-CCceeeEEecCHH
Confidence 1 10 0 012456667665 7888888899999
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhc---CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 178 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 178 ~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
++..+.++|+++| +.+-|+-.+.+...+..+.++.+.+. .+..|++ .|++++.++.+++.+|||.|-+.-.++.
T Consensus 114 Qa~~Aa~AGA~yv--sP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r~~~ei~~a~~~Gad~vTv~~~vl~ 190 (211)
T cd00956 114 QALLAAKAGATYV--SPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIRNPQHVIEAALAGADAITLPPDVLE 190 (211)
T ss_pred HHHHHHHcCCCEE--EEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccCCHHHHHHHHHcCCCEEEeCHHHHH
Confidence 9999999999995 44444433344445566655554432 1334444 5799999999999999999999999988
Q ss_pred Hhhh
Q 021614 255 SLAA 258 (310)
Q Consensus 255 ~~~~ 258 (310)
.+..
T Consensus 191 ~l~~ 194 (211)
T cd00956 191 QLLK 194 (211)
T ss_pred HHhc
Confidence 7643
No 167
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.05 E-value=0.00028 Score=62.74 Aligned_cols=95 Identities=23% Similarity=0.291 Sum_probs=61.8
Q ss_pred HHHHHHHHHcC-CcEEEEec-CCCCCC-CCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHH
Q 021614 176 AEDARIAVQAG-AAGIIVSN-HGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 176 ~~~a~~~~~aG-ad~I~v~~-~gg~~~-~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
.+.++...+.| +|+|.+.. +.+... ...+...+.+.++++.. .++||.++||| +.+++.+.+++|||.+.+||++
T Consensus 128 ~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~-~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai 205 (229)
T PLN02334 128 VEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY-PELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAV 205 (229)
T ss_pred HHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC-CCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHH
Confidence 44555555654 99997643 222211 12234455566665543 35799999999 5999999999999999999997
Q ss_pred HHHhhhccHHHHHHHHHHHHHHHHHH
Q 021614 253 VYSLAAEGEKGVRRVLEMLREEFELA 278 (310)
Q Consensus 253 l~~~~~~G~~~v~~~l~~l~~~l~~~ 278 (310)
+.+ +...+.+..+++.++..
T Consensus 206 ~~~------~d~~~~~~~l~~~~~~~ 225 (229)
T PLN02334 206 FGA------PDYAEVISGLRASVEKA 225 (229)
T ss_pred hCC------CCHHHHHHHHHHHHHHh
Confidence 632 22344556666665554
No 168
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.03 E-value=0.00017 Score=64.24 Aligned_cols=83 Identities=27% Similarity=0.442 Sum_probs=59.3
Q ss_pred hhCCCCEEEEecC---------CHHH----HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecC
Q 021614 162 TITKLPILVKGVL---------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 228 (310)
Q Consensus 162 ~~~~~pv~vK~~~---------~~~~----a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (310)
+.+++|+++=... +.+. ++.+.++|+|+|.++..+ ..+.+.++.+.. .+|+++.||
T Consensus 119 ~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~--~~pvv~~GG 187 (235)
T cd00958 119 HKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG---------DAESFKEVVEGC--PVPVVIAGG 187 (235)
T ss_pred HHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC--CCCEEEeCC
Confidence 4467888873221 2333 455889999999885321 355566666654 689999999
Q ss_pred C--CCHHH----HHHHHHcCCCEEEEcHHHHHH
Q 021614 229 V--RRGTD----VFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 229 I--~~~~d----v~k~l~~GAd~V~ig~~~l~~ 255 (310)
+ .+.+| +.+++.+||++|.+||.++..
T Consensus 188 ~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~ 220 (235)
T cd00958 188 PKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQR 220 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEechhhhcC
Confidence 7 56666 777889999999999998853
No 169
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.01 E-value=8.7e-05 Score=66.68 Aligned_cols=99 Identities=17% Similarity=0.026 Sum_probs=72.7
Q ss_pred HHHHHHHHhhCCCCEEEEe-cCCHHHHHHHHHcCCcEEEEecC---------------------------CC---C----
Q 021614 154 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------------------GA---R---- 198 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~~aGad~I~v~~~---------------------------gg---~---- 198 (310)
.+.|+++.+.+..|+.+.+ +.+.++++.+.+.|+|.|+++.. .| .
T Consensus 63 ~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~ 142 (243)
T TIGR01919 63 EMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNR 142 (243)
T ss_pred HHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECC
Confidence 5678899888889998886 47899999999999999987531 11 0
Q ss_pred -----CC------------------------CC--CcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHH---HcCCC
Q 021614 199 -----QL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL---ALGAS 244 (310)
Q Consensus 199 -----~~------------------------~~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l---~~GAd 244 (310)
.. ++ .-+.++.+.++++.. ++||+++|||++.+|+.+.- ..|++
T Consensus 143 Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv~ 220 (243)
T TIGR01919 143 GWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGVS 220 (243)
T ss_pred CeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCee
Confidence 00 00 113444555554443 79999999999999998763 35999
Q ss_pred EEEEcHHHHH
Q 021614 245 GIFIGRPVVY 254 (310)
Q Consensus 245 ~V~ig~~~l~ 254 (310)
+|.+|++++.
T Consensus 221 gvivg~Al~~ 230 (243)
T TIGR01919 221 VAIGGKLLYA 230 (243)
T ss_pred EEEEhHHHHc
Confidence 9999999875
No 170
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.01 E-value=3.6e-05 Score=80.06 Aligned_cols=151 Identities=25% Similarity=0.230 Sum_probs=107.5
Q ss_pred HhhhccCCc-ccHHHHHHHHhh-----CCCCEEEEecCCH---HHHHHHHHcCCcEEEEecCCC-CC---C---CCCcch
Q 021614 143 YVAGQIDRS-LSWKDVKWLQTI-----TKLPILVKGVLTA---EDARIAVQAGAAGIIVSNHGA-RQ---L---DYVPAT 206 (310)
Q Consensus 143 ~~~~~~~~~-~~~~~i~~ir~~-----~~~pv~vK~~~~~---~~a~~~~~aGad~I~v~~~gg-~~---~---~~~~~~ 206 (310)
+++|..+.+ .+.|+++++.-- ..-.|.||.+... -.|.-+.++.||.|.|++|.| +. + ....-+
T Consensus 1070 LISPPPHHDIYSIEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlP 1149 (2142)
T KOG0399|consen 1070 LISPPPHHDIYSIEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLP 1149 (2142)
T ss_pred cCCCCCccccccHHHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCC
Confidence 344444444 367777766432 2467899987432 135667788999999999853 32 1 111112
Q ss_pred HHH-HHHHHH-----HhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhc---------------------
Q 021614 207 IMA-LEEVVK-----ATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE--------------------- 259 (310)
Q Consensus 207 ~~~-l~~i~~-----~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~--------------------- 259 (310)
|+. +.+-.+ .++.++-+-.+|+++++.|+.-|-.+||+-.++++.-+.+++|-
T Consensus 1150 WELGlAEThQtLv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~L 1229 (2142)
T KOG0399|consen 1150 WELGLAETHQTLVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPEL 1229 (2142)
T ss_pred hhhcchhhhhHHhhccccccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHH
Confidence 332 333333 34668899999999999999999999999999999776665431
Q ss_pred -----c-HHHHHHHHHHHHHHHHHHHHHcCCCCHhhhccc
Q 021614 260 -----G-EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 293 (310)
Q Consensus 260 -----G-~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~ 293 (310)
| ++.|.+++-.+.+|++.+|+.+|...+.|+-++
T Consensus 1230 RakF~G~PehvVNff~yvaEEvR~imakLGfrtldemvGr 1269 (2142)
T KOG0399|consen 1230 RAKFPGQPEHVVNFFFYVAEEVRGIMAKLGFRTLDEMVGR 1269 (2142)
T ss_pred HhhCCCCcHHHHHHHHHHHHHHHHHHHHhCcchHHHHhcc
Confidence 3 356889999999999999999999999999765
No 171
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.00 E-value=0.00012 Score=64.83 Aligned_cols=95 Identities=14% Similarity=0.060 Sum_probs=67.1
Q ss_pred HHHHHhhCCCCEEEEec--CCHHHHHHHHHcCCcEEEEecCCCCCC-CCCcchHHHHHHHHHHhcCCceEEEecCCCCHH
Q 021614 157 VKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 233 (310)
Q Consensus 157 i~~ir~~~~~pv~vK~~--~~~~~a~~~~~aGad~I~v~~~gg~~~-~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (310)
+..+|+...--.+++.. .+.+++..+.+.|+|+|.++.-..+.. +..+.....+.++.+.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 45566554333445543 467888888899999999876321111 11233455565666554 7999999999 699
Q ss_pred HHHHHHHcCCCEEEEcHHHHH
Q 021614 234 DVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 234 dv~k~l~~GAd~V~ig~~~l~ 254 (310)
++.+++.+||++|.+-|.++.
T Consensus 177 n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhC
Confidence 999999999999999999875
No 172
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.98 E-value=9.1e-05 Score=72.20 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=83.3
Q ss_pred HHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEecCC----------------C-------------------
Q 021614 154 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHG----------------A------------------- 197 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~~g----------------g------------------- 197 (310)
++.++.+|+.+++||+.|-. .++.+...+..+|||+|.+...- |
T Consensus 99 ~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~ 178 (454)
T PRK09427 99 FDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIAL 178 (454)
T ss_pred HHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhC
Confidence 57788888888899998864 56777777777777777654210 0
Q ss_pred ---------CCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHH
Q 021614 198 ---------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVL 268 (310)
Q Consensus 198 ---------~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l 268 (310)
|.+..-......-.++...++.++.+++.+||++++|+..+ ..|||+|.+|+++|.+. ...+.+
T Consensus 179 ~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~~~------d~~~~~ 251 (454)
T PRK09427 179 GAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSLMAED------DLELAV 251 (454)
T ss_pred CCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcCCC------CHHHHH
Confidence 01111111223334444455567889999999999999875 55899999999999741 122233
Q ss_pred HHHHHHHHHHHHHcCCCCHhhhc
Q 021614 269 EMLREEFELAMALSGCRSLKEIT 291 (310)
Q Consensus 269 ~~l~~~l~~~m~~~G~~~i~~l~ 291 (310)
..+.. ...+.||.++..+.+
T Consensus 252 ~~L~~---~~vKICGit~~eda~ 271 (454)
T PRK09427 252 RKLIL---GENKVCGLTRPQDAK 271 (454)
T ss_pred HHHhc---cccccCCCCCHHHHH
Confidence 33322 345779988877765
No 173
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=97.98 E-value=0.002 Score=56.70 Aligned_cols=173 Identities=20% Similarity=0.158 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHcCCeeEeCCCC------CCCH----HHHHccCCCceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeC
Q 021614 29 GEYATARAASAAGTIMTLSSWS------TSSV----EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 98 (310)
Q Consensus 29 ~~~~la~~a~~~g~~~~~~~~~------~~~~----e~i~~~~~~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~ 98 (310)
+|..-.+.+.+.|.--+++|.- ..++ +++.+..+++..+|++ ..|.+.+.+..+++.+..-+ +.|-+.
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~g~vs~qv~-~~~~~~mi~~a~~l~~~~~~-i~iKIP 85 (213)
T TIGR00875 8 ANVEEIKKAAELGILAGVTTNPSLIAKEGRSFWEVLKEIQEAVEGPVSAETI-SLDAEGMVEEAKELAKLAPN-IVVKIP 85 (213)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCHHHHHHHHHHhcCCcEEEEEe-eCCHHHHHHHHHHHHHhCCC-eEEEeC
Confidence 4666777788888777777642 1222 3344444567788997 56777776666666665433 333221
Q ss_pred CCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCHHH
Q 021614 99 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAED 178 (310)
Q Consensus 99 ~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~ 178 (310)
.. ..| .+.++.+++. ++++-+=.+.+.++
T Consensus 86 --~T----------------------------------~~G--------------l~A~~~L~~~-Gi~v~~T~vfs~~Q 114 (213)
T TIGR00875 86 --MT----------------------------------SEG--------------LKAVKILKKE-GIKTNVTLVFSAAQ 114 (213)
T ss_pred --CC----------------------------------HHH--------------HHHHHHHHHC-CCceeEEEecCHHH
Confidence 10 001 2446666543 67777777899999
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHh---cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
+..+.++|+++|... -||-.+.+...+..+.++.+.+ ..+.+|++ ..+++..++.++..+|||.|-+.-.++..
T Consensus 115 a~~Aa~aGa~yispy--vgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-AS~r~~~~v~~~~~~G~d~vTip~~vl~~ 191 (213)
T TIGR00875 115 ALLAAKAGATYVSPF--VGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-ASVRHPRHVLEAALIGADIATMPLDVMQQ 191 (213)
T ss_pred HHHHHHcCCCEEEee--cchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-eccCCHHHHHHHHHcCCCEEEcCHHHHHH
Confidence 999999999988653 2343333434455555555443 23567665 56999999999999999999999999887
Q ss_pred hh
Q 021614 256 LA 257 (310)
Q Consensus 256 ~~ 257 (310)
+.
T Consensus 192 l~ 193 (213)
T TIGR00875 192 LF 193 (213)
T ss_pred HH
Confidence 64
No 174
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.00052 Score=60.06 Aligned_cols=137 Identities=24% Similarity=0.302 Sum_probs=91.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
..|.....+.+++++++|++.+ |+|. +..+|. | +-.
T Consensus 12 saD~~~l~~el~~~~~agad~i--H~DV---------MDghFV-P--------------------------------NiT 47 (220)
T COG0036 12 SADFARLGEELKALEAAGADLI--HIDV---------MDGHFV-P--------------------------------NIT 47 (220)
T ss_pred hCCHhHHHHHHHHHHHcCCCEE--EEec---------cCCCcC-C--------------------------------Ccc
Confidence 4577788888999999999986 4442 001111 0 111
Q ss_pred ccHHHHHHHHhhCCCCEEEEec-CCHH-HHHHHHHcCCcEEEEecC---------------C---------CCC------
Q 021614 152 LSWKDVKWLQTITKLPILVKGV-LTAE-DARIAVQAGAAGIIVSNH---------------G---------ARQ------ 199 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK~~-~~~~-~a~~~~~aGad~I~v~~~---------------g---------g~~------ 199 (310)
+.-..++++|+.++.|+-|=+. .+++ .+....++|||.|.++.- | +|.
T Consensus 48 fGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~ 127 (220)
T COG0036 48 FGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEP 127 (220)
T ss_pred cCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHH
Confidence 2246799999988888887753 4555 478889999999998741 1 011
Q ss_pred ----CC-----------CC----cchHHHHHHHHHHhcC--CceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 200 ----LD-----------YV----PATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 200 ----~~-----------~~----~~~~~~l~~i~~~~~~--~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
.| +| +...+-+.++++.... ++-|-++|||. .+.+.++.++|||.+..||+++
T Consensus 128 ~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSalF 201 (220)
T COG0036 128 VLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSALF 201 (220)
T ss_pred HHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEEEe
Confidence 01 12 2344445555554422 57799999998 7888888889999999999554
No 175
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.97 E-value=0.00052 Score=59.71 Aligned_cols=69 Identities=12% Similarity=0.182 Sum_probs=44.6
Q ss_pred cCCcEEEEecC-CCC-CCCCCcchHHHHHHHHHHhc---CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 185 AGAAGIIVSNH-GAR-QLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 185 aGad~I~v~~~-gg~-~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.++|++.+... .|. .........+.+.++++... .++|+++.|||+. +++.+++..|||++.+||+++.
T Consensus 126 ~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 126 DEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred hhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 34777765442 121 11111222334444444331 1489999999995 9999999999999999999974
No 176
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.95 E-value=0.00024 Score=72.53 Aligned_cols=167 Identities=20% Similarity=0.238 Sum_probs=99.8
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCCcchHH---hhhccCCCCcccccccccccccccccccchhhHHHh--hhccCCcccHH
Q 021614 81 LVRRAERAGFKAIALTVDTPRLGRREAD---IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV--AGQIDRSLSWK 155 (310)
Q Consensus 81 ~i~~~~~~G~~~i~i~~~~p~~~~r~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 155 (310)
+.+.-++.|+.+|-|..+...++....+ +|.....|- + ++-..++..++..+...|+...+ ...++ +..++
T Consensus 75 ~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~Pv-L--rKDFIid~~QI~ea~~~GADavLLI~~~L~-~~~l~ 150 (695)
T PRK13802 75 LAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIPV-L--RKDFIVTDYQIWEARAHGADLVLLIVAALD-DAQLK 150 (695)
T ss_pred HHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCCE-E--eccccCCHHHHHHHHHcCCCEeehhHhhcC-HHHHH
Confidence 3444567999999998887666444433 445555552 1 11111222222222112222111 11111 11122
Q ss_pred HHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHH
Q 021614 156 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 235 (310)
Q Consensus 156 ~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv 235 (310)
.+-+..+..+.-++| .+-+.++++++.++|++.|-|.|+.-..+ ........++...++.++.+|+.+||++++|+
T Consensus 151 ~l~~~a~~lGme~Lv-Evh~~~el~~a~~~ga~iiGINnRdL~tf---~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~ 226 (695)
T PRK13802 151 HLLDLAHELGMTVLV-ETHTREEIERAIAAGAKVIGINARNLKDL---KVDVNKYNELAADLPDDVIKVAESGVFGAVEV 226 (695)
T ss_pred HHHHHHHHcCCeEEE-EeCCHHHHHHHHhCCCCEEEEeCCCCccc---eeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 233333334665554 55789999999999999998877543222 22333444555555567889999999999999
Q ss_pred HHHHHcCCCEEEEcHHHHHH
Q 021614 236 FKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 236 ~k~l~~GAd~V~ig~~~l~~ 255 (310)
..+..+|||+|.||+++|.+
T Consensus 227 ~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 227 EDYARAGADAVLVGEGVATA 246 (695)
T ss_pred HHHHHCCCCEEEECHHhhCC
Confidence 99999999999999999864
No 177
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.95 E-value=5.8e-05 Score=67.13 Aligned_cols=76 Identities=34% Similarity=0.436 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.|+.+.+.|+|.+.+....+. ..+....+..+.++.+.+ .+|+++.|||++.+|+.+++..|||.|++|+..+.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 46688888999999999854321 112345677788887766 69999999999999999999999999999998764
No 178
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.95 E-value=0.00025 Score=61.74 Aligned_cols=200 Identities=18% Similarity=0.225 Sum_probs=107.8
Q ss_pred ceeEEEEecC-ChHHHHHHHHHHHHcCCcEEEEeeCCCCC---Ccch-HHhhhccCCCCcccccccccccccccc--ccc
Q 021614 64 IRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTVDTPRL---GRRE-ADIKNRFTLPPFLTLKNFQGLDLGKMD--EAN 136 (310)
Q Consensus 64 ~~~~ql~~~~-d~~~~~~~i~~~~~~G~~~i~i~~~~p~~---~~r~-~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~ 136 (310)
++.+|+-... +.+...+.++++.+. .+ .|-+++|-- |-+. +.+|..| |.+.-..-.+-.|...++ ...
T Consensus 3 ~p~LQvALD~~~l~~Ai~~a~~v~~~-~d--iiEvGTpLik~eG~~aV~~lr~~~--pd~~IvAD~Kt~D~G~~e~~ma~ 77 (217)
T COG0269 3 PPLLQVALDLLDLEEAIEIAEEVADY-VD--IIEVGTPLIKAEGMRAVRALRELF--PDKIIVADLKTADAGAIEARMAF 77 (217)
T ss_pred CcceEeeecccCHHHHHHHHHHhhhc-ce--EEEeCcHHHHHhhHHHHHHHHHHC--CCCeEEeeeeecchhHHHHHHHH
Confidence 3567887642 444454555544444 44 455677763 4444 6676666 443211111222222111 110
Q ss_pred chhhHH-HhhhccCCcccHHHHHHHHhhCCCCEEEEec--CCHHH-HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHH
Q 021614 137 DSGLAA-YVAGQIDRSLSWKDVKWLQTITKLPILVKGV--LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEE 212 (310)
Q Consensus 137 ~~~~~~-~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~--~~~~~-a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~ 212 (310)
..|+.- -++. ..+..+.+..-+..+.+++-+.+=+. .++++ ++.+.++|+|.+.++-.-.-|..+..+.++.+..
T Consensus 78 ~aGAd~~tV~g-~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ 156 (217)
T COG0269 78 EAGADWVTVLG-AADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEK 156 (217)
T ss_pred HcCCCEEEEEe-cCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHH
Confidence 111110 0011 12222333333333445666665554 45665 4566669999998864211122122233677777
Q ss_pred HHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHH
Q 021614 213 VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 276 (310)
Q Consensus 213 i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~ 276 (310)
+++.....+.+-..|||. ++++......|++.|.+||++..+ .+..+..+.+++++.
T Consensus 157 ik~~~~~g~~vAVaGGI~-~~~i~~~~~~~~~ivIvGraIt~a------~dp~~~a~~~~~~i~ 213 (217)
T COG0269 157 IKKLSDLGAKVAVAGGIT-PEDIPLFKGIGADIVIVGRAITGA------KDPAEAARKFKEEID 213 (217)
T ss_pred HHHhhccCceEEEecCCC-HHHHHHHhcCCCCEEEECchhcCC------CCHHHHHHHHHHHHh
Confidence 776654358999999998 999999999999999999998642 333344555655553
No 179
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.94 E-value=0.0011 Score=58.70 Aligned_cols=137 Identities=22% Similarity=0.246 Sum_probs=89.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
..|.-.+.+.++++++.|++.+ |+|. +++ .++ | +-.
T Consensus 12 ~ad~~~l~~~i~~l~~~g~d~l--HiDi------------------------mDG---------------~FV-P--N~t 47 (223)
T PRK08745 12 SADFARLGEEVDNVLKAGADWV--HFDV------------------------MDN---------------HYV-P--NLT 47 (223)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEec------------------------ccC---------------ccC-C--Ccc
Confidence 4577788889999999999876 4441 000 011 0 122
Q ss_pred ccHHHHHHHHhh-CCCCEEEEec-CCHH-HHHHHHHcCCcEEEEecC---------------C---C------CC-----
Q 021614 152 LSWKDVKWLQTI-TKLPILVKGV-LTAE-DARIAVQAGAAGIIVSNH---------------G---A------RQ----- 199 (310)
Q Consensus 152 ~~~~~i~~ir~~-~~~pv~vK~~-~~~~-~a~~~~~aGad~I~v~~~---------------g---g------~~----- 199 (310)
+..+.++++|+. ++.|+-+=+- .+++ .+....++|+|.|.++-- | | +.
T Consensus 48 fg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~ 127 (223)
T PRK08745 48 IGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILD 127 (223)
T ss_pred cCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHH
Confidence 345789999988 5888766543 4454 467888999999988641 1 0 10
Q ss_pred -----CC-----------CC----cchHHHHHHHHHHhc---CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 200 -----LD-----------YV----PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 200 -----~~-----------~~----~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
.| +| +..++-+.++++... .++.|-++|||. .+.+.++.++|||.+.+||+++
T Consensus 128 ~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF 203 (223)
T PRK08745 128 WVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIF 203 (223)
T ss_pred HHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhh
Confidence 01 11 223344444444321 247799999998 7888899999999999999854
No 180
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.94 E-value=8.1e-05 Score=66.52 Aligned_cols=96 Identities=25% Similarity=0.371 Sum_probs=62.3
Q ss_pred HHHHHHHHhh---CCCCEEEEecCCHHH-------------HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHh
Q 021614 154 WKDVKWLQTI---TKLPILVKGVLTAED-------------ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT 217 (310)
Q Consensus 154 ~~~i~~ir~~---~~~pv~vK~~~~~~~-------------a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~ 217 (310)
.+.++++++. +++|+++=...+.++ ++.+.++|+|+|..+..+. ..........+.++.+..
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~~~t~~~~~~~~~~~~~~ 188 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP--VGATPEDVELMRKAVEAA 188 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--SCSHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc--ccccHHHHHHHHHHHHhc
Confidence 3455555554 478888764433322 4678899999999875411 111122333444444333
Q ss_pred cCCce----EEEecCC------CCHHHHHHHHHcCC--CEEEEcHHHH
Q 021614 218 QGRIP----VFLDGGV------RRGTDVFKALALGA--SGIFIGRPVV 253 (310)
Q Consensus 218 ~~~ip----via~GGI------~~~~dv~k~l~~GA--d~V~ig~~~l 253 (310)
.+| |.++||+ ++.+++.+++.+|| .++..||.++
T Consensus 189 --~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 189 --PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp --SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred --CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 456 9999999 99999999999999 8888888764
No 181
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.94 E-value=0.00013 Score=64.89 Aligned_cols=76 Identities=28% Similarity=0.367 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.++...+.|+|.+.+..-.+.. .+....++.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~~-~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGAK-AGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 355788889999999987643221 12345677788887765 79999999999999999999999999999998875
No 182
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.92 E-value=0.00016 Score=65.02 Aligned_cols=100 Identities=26% Similarity=0.266 Sum_probs=66.7
Q ss_pred CCcccHHHHHHHHhhCCCCEEEEec-----CCHHH-----HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHh-
Q 021614 149 DRSLSWKDVKWLQTITKLPILVKGV-----LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT- 217 (310)
Q Consensus 149 ~~~~~~~~i~~ir~~~~~pv~vK~~-----~~~~~-----a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~- 217 (310)
+.+...++|+++++.++-++.+|.+ ++.++ .+.+.++|||+|.-|...+ .+..+.+.+.-+++.+
T Consensus 113 ~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~~i~ 188 (257)
T PRK05283 113 NEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLEVIR 188 (257)
T ss_pred cHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHH
Confidence 3334457788888876435777876 34332 3578899999999765321 1223444444444443
Q ss_pred ----cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 218 ----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 218 ----~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+.++.|-++|||++.+++.+++.+|.+. +|.-|+.
T Consensus 189 ~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~--lg~~~~~ 227 (257)
T PRK05283 189 DMGVAKTVGFKPAGGVRTAEDAAQYLALADEI--LGADWAD 227 (257)
T ss_pred hcccCCCeeEEccCCCCCHHHHHHHHHHHHHH--hChhhcC
Confidence 3468999999999999999999998764 5555553
No 183
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.92 E-value=0.00052 Score=60.82 Aligned_cols=97 Identities=26% Similarity=0.323 Sum_probs=62.7
Q ss_pred HHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCC--CC--CCCC-CcchHHHH-HHHHHHhcCCceEEEecCC
Q 021614 156 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG--AR--QLDY-VPATIMAL-EEVVKATQGRIPVFLDGGV 229 (310)
Q Consensus 156 ~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~g--g~--~~~~-~~~~~~~l-~~i~~~~~~~ipvia~GGI 229 (310)
.++..++ .++.+++ .+.+.++++.+.+.|.|+|-+-+.+ |+ .... .+.....+ ..+++ ...++||++.|||
T Consensus 106 ~v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~-~~~~~pvi~GggI 182 (223)
T PRK04302 106 VVERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKK-VNPDVKVLCGAGI 182 (223)
T ss_pred HHHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHh-ccCCCEEEEECCC
Confidence 3444444 3554443 3456778888888999998764421 21 1111 12222222 22222 1236899999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 230 RRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 230 ~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
++++++..++..|||+|.+|++++..
T Consensus 183 ~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 183 STGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 99999999999999999999999863
No 184
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.88 E-value=0.0013 Score=57.16 Aligned_cols=169 Identities=22% Similarity=0.222 Sum_probs=97.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccc------cccccccccchhhHHHhh
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL------DLGKMDEANDSGLAAYVA 145 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 145 (310)
+.|.+...+.++.++..|++.++|-.|. . -.+..+.--.+|-+|..-..+.+ .++.++. ++--.+|-.
T Consensus 23 NFd~~~V~~i~~AA~~ggAt~vDIAadp-~---LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEI--GNfDsFY~q 96 (242)
T PF04481_consen 23 NFDAESVAAIVKAAEIGGATFVDIAADP-E---LVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEI--GNFDSFYAQ 96 (242)
T ss_pred ccCHHHHHHHHHHHHccCCceEEecCCH-H---HHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEe--cchHHHHhc
Confidence 4578888899988899999999886652 2 12333444455655532111100 0000111 111111211
Q ss_pred hccCCcccHH----HHHHHHhhC-CCCEEEEe--cCC----HHHHHHHHHcCCcEEEEecCCCCCCC---C--------C
Q 021614 146 GQIDRSLSWK----DVKWLQTIT-KLPILVKG--VLT----AEDARIAVQAGAAGIIVSNHGARQLD---Y--------V 203 (310)
Q Consensus 146 ~~~~~~~~~~----~i~~ir~~~-~~pv~vK~--~~~----~~~a~~~~~aGad~I~v~~~gg~~~~---~--------~ 203 (310)
-+.|..+ ..++.|+.. ++|+.|-. ++. .+-|..+.++|+|.|.. .||++.. . .
T Consensus 97 ---Gr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQT--EGgtss~p~~~g~lglIeka 171 (242)
T PF04481_consen 97 ---GRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQT--EGGTSSKPTSPGILGLIEKA 171 (242)
T ss_pred ---CCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEc--CCCCCCCCCCcchHHHHHHH
Confidence 1234333 344555543 56665533 233 23488899999999964 3343211 1 1
Q ss_pred cchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 204 PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 204 ~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+++.....+.+.+ ++||+...|+.+ -.+--++++||.+|++|+++-.
T Consensus 172 apTLAaay~ISr~v--~iPVlcASGlS~-vT~PmAiaaGAsGVGVGSavn~ 219 (242)
T PF04481_consen 172 APTLAAAYAISRAV--SIPVLCASGLSA-VTAPMAIAAGASGVGVGSAVNR 219 (242)
T ss_pred hHHHHHHHHHHhcc--CCceEeccCcch-hhHHHHHHcCCcccchhHHhhh
Confidence 24555555665555 899999999984 4566789999999999998743
No 185
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.87 E-value=0.00058 Score=63.70 Aligned_cols=172 Identities=17% Similarity=0.187 Sum_probs=100.0
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHH---hhhc-cCCCCcccccccccccccccccccchhhHHHh--hh
Q 021614 73 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD---IKNR-FTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV--AG 146 (310)
Q Consensus 73 ~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~---~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 146 (310)
.|+..+ .+.-++.|+.+|-|-.|...++....+ +|.. ...|- + ++-..++..++-.+-..|+...+ ..
T Consensus 139 ~dp~~i---A~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPv-L--rKDFIID~yQI~eAr~~GADAVLLIaa 212 (338)
T PLN02460 139 FDPVEI---AQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPL-L--CKEFIVDAWQIYYARSKGADAILLIAA 212 (338)
T ss_pred CCHHHH---HHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCE-e--eccccCCHHHHHHHHHcCCCcHHHHHH
Confidence 355443 444567999999998887776544433 4443 55552 1 11112222222222112222211 11
Q ss_pred ccCCcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHc-CCcEEEEecCCCCCCCCCcchHHHHHHHHH-----Hh-cC
Q 021614 147 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVK-----AT-QG 219 (310)
Q Consensus 147 ~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~a-Gad~I~v~~~gg~~~~~~~~~~~~l~~i~~-----~~-~~ 219 (310)
.++ +..++.+-++.+..+.-++| .+-+.++++++.++ |++.|-|.|+.-..+. .......++.. .+ ..
T Consensus 213 iL~-~~~L~~l~~~A~~LGme~LV-EVH~~~ElerAl~~~ga~iIGINNRdL~Tf~---vDl~~t~~L~~~~~~~~i~~~ 287 (338)
T PLN02460 213 VLP-DLDIKYMLKICKSLGMAALI-EVHDEREMDRVLGIEGVELIGINNRSLETFE---VDISNTKKLLEGERGEQIREK 287 (338)
T ss_pred hCC-HHHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCCCCCcce---ECHHHHHHHhhhccccccCCC
Confidence 122 11233333344445665554 55788999999998 9999988875432221 12222233333 22 23
Q ss_pred CceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 220 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 220 ~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
++-+++.+||++++|+..+..+|||+|.||..++..
T Consensus 288 ~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 288 GIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred CeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 567899999999999999999999999999999974
No 186
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.87 E-value=0.00026 Score=61.16 Aligned_cols=80 Identities=23% Similarity=0.231 Sum_probs=59.6
Q ss_pred cCCHHHHHHHHHcCCcEEEEecCCCCCCC-C--CcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 173 VLTAEDARIAVQAGAAGIIVSNHGARQLD-Y--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 173 ~~~~~~a~~~~~aGad~I~v~~~gg~~~~-~--~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
+-+.+++..+.+.|+|+|.++.-..+..+ . .+..++.+.++.+.. .++||++.||| +.+++.+++.+|+++|.+|
T Consensus 103 ~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~-~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~ 180 (196)
T TIGR00693 103 THNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS-IDIPIVAIGGI-TLENAAEVLAAGADGVAVV 180 (196)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEh
Confidence 35788888899999999998653222111 1 122466676666543 25999999999 5899999999999999999
Q ss_pred HHHHH
Q 021614 250 RPVVY 254 (310)
Q Consensus 250 ~~~l~ 254 (310)
+.++.
T Consensus 181 ~~i~~ 185 (196)
T TIGR00693 181 SAIMQ 185 (196)
T ss_pred HHhhC
Confidence 99874
No 187
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.86 E-value=0.00026 Score=66.65 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=67.2
Q ss_pred HHHHhhCCCCEEEEe-cCCHHHHHHHHHcCCcEEEEecCCCCCCC-C-CcchHHHHHHHHHHhcCCceEEEecCCCCHHH
Q 021614 158 KWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLD-Y-VPATIMALEEVVKATQGRIPVFLDGGVRRGTD 234 (310)
Q Consensus 158 ~~ir~~~~~pv~vK~-~~~~~~a~~~~~aGad~I~v~~~gg~~~~-~-~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 234 (310)
...|+..+..-+++. +-+.+++..+.+.|+|+|.++....+... + .+..++.+..+.+.. .+|+++-|||. .++
T Consensus 231 ~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~n 307 (347)
T PRK02615 231 AVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KSN 307 (347)
T ss_pred HHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHH
Confidence 444554322223343 35789999999999999998764433211 1 234466676666544 69999999996 899
Q ss_pred HHHHHHcCCCEEEEcHHHHH
Q 021614 235 VFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 235 v~k~l~~GAd~V~ig~~~l~ 254 (310)
+.+++.+||++|.+++.++.
T Consensus 308 i~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 308 IPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred HHHHHHcCCcEEEEeHHHhC
Confidence 99999999999999999874
No 188
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.86 E-value=0.0093 Score=54.75 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=60.8
Q ss_pred CCHHHHHHHH-HcCCcEEEEec--CCCCCCCCCcchHHHHHHHHHHhcCCceEEEec--CCCCHHHHHHHHHcCCCEEEE
Q 021614 174 LTAEDARIAV-QAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIFI 248 (310)
Q Consensus 174 ~~~~~a~~~~-~aGad~I~v~~--~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G--GI~~~~dv~k~l~~GAd~V~i 248 (310)
.+++++.... +.|+|++-++. ..++..+..+-.++.|.++++.+ ++|+++=| ||. .+++.+++..|++.|-+
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~-~e~~~~~i~~G~~kinv 229 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV--HIPLVLHGGSGIS-PEDFKKCIQHGIRKINV 229 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEEE
Confidence 4688888876 46999999843 21222112234678888888776 79999999 987 89999999999999999
Q ss_pred cHHHHHH
Q 021614 249 GRPVVYS 255 (310)
Q Consensus 249 g~~~l~~ 255 (310)
.+.+..+
T Consensus 230 ~T~i~~a 236 (281)
T PRK06806 230 ATATFNS 236 (281)
T ss_pred hHHHHHH
Confidence 9988764
No 189
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.85 E-value=0.0032 Score=62.37 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=52.5
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
+.++.+.++|+|.|.+....|++ ...++.+.++++.. .+++|++ |.|.|.+++..++.+|||++-+|
T Consensus 244 ~~~~~l~~ag~d~i~id~a~G~s----~~~~~~i~~ik~~~-~~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 244 ERAAALIEAGVDVLVVDSSQGNS----IYQIDMIKKLKSNY-PHVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHCCCCEEEEecCCCCc----hHHHHHHHHHHhhC-CCceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 56889999999999997643332 22356777777664 3688888 89999999999999999999754
No 190
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.84 E-value=0.00046 Score=60.53 Aligned_cols=96 Identities=19% Similarity=0.188 Sum_probs=71.0
Q ss_pred HHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEecCCCCCCC--CCcchHHHHHHHHHHhcCCceEEEecCCCCHH
Q 021614 157 VKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGT 233 (310)
Q Consensus 157 i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (310)
+...|+..+-..+++.. -+.+++..+.+.|+|+|.++.-..++.. ..+..++.+..+.+.. .+|+++-|||. .+
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi~-~~ 170 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGIN-LE 170 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCCC-HH
Confidence 44455555444455544 4789999999999999988764444322 2234566677666554 59999999998 89
Q ss_pred HHHHHHHcCCCEEEEcHHHHHH
Q 021614 234 DVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 234 dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
.+.++++.||++|.+-|+++.+
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~a 192 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITSA 192 (211)
T ss_pred HHHHHHHhCCCeEEehhHhhcC
Confidence 9999999999999999999863
No 191
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.83 E-value=0.00018 Score=64.60 Aligned_cols=75 Identities=27% Similarity=0.239 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.|+...+.|+|.+++..-.+.. +.......+.++.+.+ .+|+.+.|||+|.+|+.+++.+||+.|.+|+..+.
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~~--g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAAF--GRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHHHHHHHHCCCCEEEEEeccccC--CCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 356888889999999876432211 2345677888887766 79999999999999999999999999999998875
No 192
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.83 E-value=0.0017 Score=56.57 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=63.9
Q ss_pred HHHHHHHhhCCCCEEEEecC-CHHH--HHHHHHcCCcEEEEecCCCCC--CCCCcchHHHHHHHHHHhcCCceEEEecCC
Q 021614 155 KDVKWLQTITKLPILVKGVL-TAED--ARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGV 229 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~-~~~~--a~~~~~aGad~I~v~~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (310)
+.++.+++..+.+++-.... +..+ ...+...|+|++.+....... ..+.+..|+.+.++. .++|+++.|||
T Consensus 86 ~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~----~~~PvilaGGI 161 (203)
T cd00405 86 EYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA----SRKPVILAGGL 161 (203)
T ss_pred HHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc----cCCCEEEECCC
Confidence 45677777666777632222 2222 234556799999876532211 012244566666554 36899999999
Q ss_pred CCHHHHHHHHHcC-CCEEEEcHHHHH
Q 021614 230 RRGTDVFKALALG-ASGIFIGRPVVY 254 (310)
Q Consensus 230 ~~~~dv~k~l~~G-Ad~V~ig~~~l~ 254 (310)
+++++.+++..| +++|-+.|.+..
T Consensus 162 -~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 162 -TPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred -ChHHHHHHHHhcCCCEEEcCCcccC
Confidence 799999999999 999999998764
No 193
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.82 E-value=0.00011 Score=65.08 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=53.4
Q ss_pred HHHHHHcCCcEEEEecC--CCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 179 ARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
...+.+.|+ .+.+..- -|+. ..+.++.+.++.+.. ++|++++|||+|.+|+.+...+|||+|.+|++++.+
T Consensus 147 ~~~~~~~g~-~ii~tdI~~dGt~---~G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 147 RDFLNSFDY-GLIVLDIHSVGTM---KGPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred HHHHHhcCC-EEEEEECCccccC---CCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 455567788 5555331 1221 234678888887765 799999999999999999888999999999998753
No 194
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.80 E-value=0.00065 Score=59.36 Aligned_cols=66 Identities=23% Similarity=0.338 Sum_probs=51.8
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
+..+...|++.|.+-...|.. .+.+.+.+.++++.+ ++|++..|||++.+++.+++..|||.|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa~---~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGAS---YPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCCC---CCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 456678899999886533321 223466777777766 799999999999999999889999999987
No 195
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.76 E-value=0.00041 Score=63.37 Aligned_cols=87 Identities=24% Similarity=0.314 Sum_probs=64.5
Q ss_pred HHHHHHHhhCC-CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHH
Q 021614 155 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 233 (310)
Q Consensus 155 ~~i~~ir~~~~-~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (310)
+.++.+|+..+ .+|.+ .+-+.+++..+.++|+|+|.+.+- ..+.+.++.+..+.++|+.++|||. .+
T Consensus 178 ~av~~~r~~~~~~~I~V-Ev~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGIt-~~ 245 (277)
T PRK05742 178 QAVAAAHRIAPGKPVEV-EVESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGIN-ES 245 (277)
T ss_pred HHHHHHHHhCCCCeEEE-EeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCCC-HH
Confidence 34667776542 33332 346789999999999999987542 2344555555444579999999995 99
Q ss_pred HHHHHHHcCCCEEEEcHHHH
Q 021614 234 DVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 234 dv~k~l~~GAd~V~ig~~~l 253 (310)
++.++.++|+|.+.+|+...
T Consensus 246 ni~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 246 TLRVIAETGVDYISIGAMTK 265 (277)
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 99999999999999998654
No 196
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.76 E-value=0.00044 Score=63.53 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=66.0
Q ss_pred HHHHHHHHhhCCCCEEE-EecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHh---cCCceEEEecCC
Q 021614 154 WKDVKWLQTITKLPILV-KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGV 229 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~v-K~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI 229 (310)
.+.++.+|+..+....+ -.+-+.+++..+.++|+|+|-+++- ++ +.+.++.+.+ ..++|+.++|||
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~-------~~---e~l~~av~~~~~~~~~i~leAsGGI 252 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNM-------PV---DLMQQAVQLIRQQNPRVKIEASGNI 252 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCC-------CH---HHHHHHHHHHHhcCCCeEEEEECCC
Confidence 45688888876522222 2356899999999999999988763 22 3333333322 357999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 230 RRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 230 ~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
. .+++.++.+.|+|.+.+|++...
T Consensus 253 t-~~ni~~ya~tGvD~Isvgsl~~s 276 (288)
T PRK07428 253 T-LETIRAVAETGVDYISSSAPITR 276 (288)
T ss_pred C-HHHHHHHHHcCCCEEEEchhhhC
Confidence 5 99999999999999999997753
No 197
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.76 E-value=0.00026 Score=61.97 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHcCCcEEEEecCC-CCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHH
Q 021614 174 LTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 174 ~~~~~a~~~~~aGad~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
-++-.++++.++|+.+|-=-+.. |+. -|..+...|.-+.+.. ++|||.+-||.++.|+..++++|+|+|.+-+++
T Consensus 139 dD~v~arrLee~GcaavMPl~aPIGSg--~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 139 DDPVLARRLEEAGCAAVMPLGAPIGSG--LGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAI 214 (262)
T ss_pred CCHHHHHHHHhcCceEeccccccccCC--cCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhHh
Confidence 35677999999999988532211 211 1455667777777766 899999999999999999999999999999987
Q ss_pred HH
Q 021614 253 VY 254 (310)
Q Consensus 253 l~ 254 (310)
-.
T Consensus 215 A~ 216 (262)
T COG2022 215 AR 216 (262)
T ss_pred hc
Confidence 54
No 198
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.75 E-value=0.0034 Score=55.82 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=74.4
Q ss_pred cHHHHHHHHhhCCCCEEEEe-cCCHH-HHHHHHHcCCcEEEEecCC--C-----------------------CC------
Q 021614 153 SWKDVKWLQTITKLPILVKG-VLTAE-DARIAVQAGAAGIIVSNHG--A-----------------------RQ------ 199 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~-~~~~~-~a~~~~~aGad~I~v~~~g--g-----------------------~~------ 199 (310)
.-+.++++|+.++.|+-+=+ +.+++ .+....++|+|.|.++--. . +.
T Consensus 47 g~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~ 126 (229)
T PRK09722 47 SPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKY 126 (229)
T ss_pred CHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHH
Confidence 34678888887778866654 34454 4678888999988886421 0 10
Q ss_pred ----CC-----------CC----cchHHHHHHHHHHhc---CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhh
Q 021614 200 ----LD-----------YV----PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 257 (310)
Q Consensus 200 ----~~-----------~~----~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~ 257 (310)
.| +| +..++-+.++++... .++.|.++|||+ .+.+.++.++|||.+.+||..+|..
T Consensus 127 ~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~- 204 (229)
T PRK09722 127 YIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNL- 204 (229)
T ss_pred HHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCC-
Confidence 01 11 223334444443321 247799999999 7788899999999999998755531
Q ss_pred hccHHHHHHHHHHHHHHHH
Q 021614 258 AEGEKGVRRVLEMLREEFE 276 (310)
Q Consensus 258 ~~G~~~v~~~l~~l~~~l~ 276 (310)
.+...+.++.+++.++
T Consensus 205 ---~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 205 ---DEDIDEAWDIMTAQIE 220 (229)
T ss_pred ---CCCHHHHHHHHHHHHH
Confidence 1123445556655443
No 199
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.75 E-value=0.00041 Score=63.37 Aligned_cols=91 Identities=20% Similarity=0.213 Sum_probs=61.6
Q ss_pred HHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHH
Q 021614 154 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 233 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (310)
.+.++.+|+..+-..+.-.+-+.+++..+.++|+|+|.+++- .+.....+.+..+....++|++++||| +.+
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~-------~p~~l~~~~~~~~~~~~~i~i~AsGGI-~~~ 242 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKF-------SPEELAELVPKLRSLAPPVLLAAAGGI-NIE 242 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCC-------CHHHHHHHHHHHhccCCCceEEEECCC-CHH
Confidence 456777877653222222346889999999999999988752 122222222211111136999999999 699
Q ss_pred HHHHHHHcCCCEEEEcHHH
Q 021614 234 DVFKALALGASGIFIGRPV 252 (310)
Q Consensus 234 dv~k~l~~GAd~V~ig~~~ 252 (310)
++.++...|+|++.+|..+
T Consensus 243 ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 243 NAAAYAAAGADILVTSAPY 261 (272)
T ss_pred HHHHHHHcCCcEEEEChhh
Confidence 9999999999999777653
No 200
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.74 E-value=0.00043 Score=60.59 Aligned_cols=99 Identities=31% Similarity=0.434 Sum_probs=70.1
Q ss_pred HHHHHHHhhCCCCEEEEecC-CHHHHHHHHHcCCcEEEEec---------------------CCCCCC------------
Q 021614 155 KDVKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSN---------------------HGARQL------------ 200 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~-~~~~a~~~~~aGad~I~v~~---------------------~gg~~~------------ 200 (310)
+.|+++.+.+.+||..|... ...+|+.+...|+|+|.=|- .|.+.+
T Consensus 67 ~~i~eim~aVsIPVMAKvRIGH~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAa 146 (296)
T COG0214 67 KMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAA 146 (296)
T ss_pred HHHHHHHHhcccceeeeeecchhHHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHH
Confidence 67888999999999999975 46789999999999997541 011000
Q ss_pred ----CC--C------------------------------------cchHHHHHHHHHHhcCCce--EEEecCCCCHHHHH
Q 021614 201 ----DY--V------------------------------------PATIMALEEVVKATQGRIP--VFLDGGVRRGTDVF 236 (310)
Q Consensus 201 ----~~--~------------------------------------~~~~~~l~~i~~~~~~~ip--via~GGI~~~~dv~ 236 (310)
.+ + ..+++.+.++++. +++| -++.|||-|+.|+.
T Consensus 147 MIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~--grLPVvnFAAGGvATPADAA 224 (296)
T COG0214 147 MIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL--GRLPVVNFAAGGVATPADAA 224 (296)
T ss_pred HHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh--CCCCeEeecccCcCChhHHH
Confidence 00 0 0112222332221 3556 47899999999999
Q ss_pred HHHHcCCCEEEEcHHHHHH
Q 021614 237 KALALGASGIFIGRPVVYS 255 (310)
Q Consensus 237 k~l~~GAd~V~ig~~~l~~ 255 (310)
-++.+|||+|.+||.+++.
T Consensus 225 LMM~LGadGVFVGSGIFKS 243 (296)
T COG0214 225 LMMQLGADGVFVGSGIFKS 243 (296)
T ss_pred HHHHhCCCeEEecccccCC
Confidence 9999999999999988763
No 201
>PRK08005 epimerase; Validated
Probab=97.73 E-value=0.0024 Score=56.01 Aligned_cols=136 Identities=17% Similarity=0.172 Sum_probs=86.8
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
..|...+.+.++++++.|++.+ |+|. +...|. | +-.
T Consensus 9 ~ad~~~l~~el~~l~~~g~d~l--HiDv---------MDG~FV-P--------------------------------N~t 44 (210)
T PRK08005 9 SADPLRYAEALTALHDAPLGSL--HLDI---------EDTSFI-N--------------------------------NIT 44 (210)
T ss_pred hCCHHHHHHHHHHHHHCCCCEE--EEec---------cCCCcC-C--------------------------------ccc
Confidence 4577788888999999999875 5552 000111 0 111
Q ss_pred ccHHHHHHHHhhCCCCEEEEec-CCHH-HHHHHHHcCCcEEEEecC---------------C---------CCC------
Q 021614 152 LSWKDVKWLQTITKLPILVKGV-LTAE-DARIAVQAGAAGIIVSNH---------------G---------ARQ------ 199 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK~~-~~~~-~a~~~~~aGad~I~v~~~---------------g---------g~~------ 199 (310)
+.-+.++++|+.++.|+-+=+. .+++ .++...++|+|.|.++-- | ++.
T Consensus 45 fG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~ 124 (210)
T PRK08005 45 FGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRY 124 (210)
T ss_pred cCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 2346788888877778766543 3454 467888889998888631 1 011
Q ss_pred ----CC-----------CC----cchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 200 ----LD-----------YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 200 ----~~-----------~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
.| +| +...+-+.++++.. ....|.++|||+ .+.+.++.++|||.+.+||+++
T Consensus 125 ~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~-~~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 125 LALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF-PAAECWADGGIT-LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred HHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhc-ccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 01 12 22233344444332 234799999998 7888899999999999999865
No 202
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.71 E-value=0.0027 Score=60.78 Aligned_cols=93 Identities=19% Similarity=0.191 Sum_probs=60.7
Q ss_pred HHHHHHhhCCCCEEEEec--CCH-HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCH
Q 021614 156 DVKWLQTITKLPILVKGV--LTA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 232 (310)
Q Consensus 156 ~i~~ir~~~~~pv~vK~~--~~~-~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (310)
.++.+++. ++-+.+-.. .++ +.++.+ ..++|.|.++..-..+ ...+.+..+.++++. ..+++|.++|||. .
T Consensus 268 ai~~akk~-GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllht~vdp~--~~~~~~~kI~~ikk~-~~~~~I~VdGGI~-~ 341 (391)
T PRK13307 268 AIHEAQKT-GIYSILDMLNVEDPVKLLESL-KVKPDVVELHRGIDEE--GTEHAWGNIKEIKKA-GGKILVAVAGGVR-V 341 (391)
T ss_pred HHHHHHHc-CCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEccccCCC--cccchHHHHHHHHHh-CCCCcEEEECCcC-H
Confidence 35555553 444444222 234 344444 7899999886411111 223456666666654 3478999999999 8
Q ss_pred HHHHHHHHcCCCEEEEcHHHHH
Q 021614 233 TDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 233 ~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+++.+++.+|||.+.+||+++.
T Consensus 342 eti~~l~~aGADivVVGsaIf~ 363 (391)
T PRK13307 342 ENVEEALKAGADILVVGRAITK 363 (391)
T ss_pred HHHHHHHHcCCCEEEEeHHHhC
Confidence 8899999999999999999653
No 203
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.71 E-value=0.0006 Score=62.02 Aligned_cols=87 Identities=24% Similarity=0.239 Sum_probs=64.7
Q ss_pred HHHHHHHhhCC-CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHH
Q 021614 155 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 233 (310)
Q Consensus 155 ~~i~~ir~~~~-~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (310)
..++++|+..+ ...+--.+-+.+++..+.++|+|+|-+++- ..+.+.++.+.++..+|+.++|||. .+
T Consensus 166 ~av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI~-~~ 234 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGIT-LD 234 (265)
T ss_pred HHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCCC-HH
Confidence 44778888764 222222456899999999999999988652 2245555555554459999999996 99
Q ss_pred HHHHHHHcCCCEEEEcHHH
Q 021614 234 DVFKALALGASGIFIGRPV 252 (310)
Q Consensus 234 dv~k~l~~GAd~V~ig~~~ 252 (310)
++.+..+.|+|.+.+|...
T Consensus 235 ni~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 235 NLEEYAETGVDVISSGALT 253 (265)
T ss_pred HHHHHHHcCCCEEEeCHHH
Confidence 9999999999999996544
No 204
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.71 E-value=0.00031 Score=64.93 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHcCCcEEEEecCC-CCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHH
Q 021614 173 VLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 251 (310)
Q Consensus 173 ~~~~~~a~~~~~aGad~I~v~~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~ 251 (310)
..++..++++.+.|+-+|---+.. |+. .+....+.+..+.+.. ++||+.++||.+++|+.+++++|||+|.+.++
T Consensus 205 ~~d~~~a~~l~~~g~~avmPl~~pIGsg--~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGadgVL~nSa 280 (326)
T PRK11840 205 SDDPIAAKRLEDAGAVAVMPLGAPIGSG--LGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGCDGVLMNTA 280 (326)
T ss_pred CCCHHHHHHHHhcCCEEEeeccccccCC--CCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEcce
Confidence 467899999999999555331110 111 1334566676666654 79999999999999999999999999999998
Q ss_pred HHH
Q 021614 252 VVY 254 (310)
Q Consensus 252 ~l~ 254 (310)
+..
T Consensus 281 Ia~ 283 (326)
T PRK11840 281 IAE 283 (326)
T ss_pred ecc
Confidence 864
No 205
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.70 E-value=0.00061 Score=62.18 Aligned_cols=86 Identities=28% Similarity=0.275 Sum_probs=63.8
Q ss_pred HHHHHHHhhCC--CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcC--CceEEEecCCC
Q 021614 155 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVR 230 (310)
Q Consensus 155 ~~i~~ir~~~~--~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~--~ipvia~GGI~ 230 (310)
..++++|+..+ .+|. -.+-|.+++..+.++|+|+|-+.+-. .+.+.++.+.++. ++|+.++|||.
T Consensus 169 ~~v~~~r~~~~~~~~I~-vev~t~eea~~A~~~gaD~I~ld~~~----------~e~l~~~v~~i~~~~~i~i~asGGIt 237 (269)
T cd01568 169 EAVKRARAAAPFEKKIE-VEVETLEEAEEALEAGADIIMLDNMS----------PEELKEAVKLLKGLPRVLLEASGGIT 237 (269)
T ss_pred HHHHHHHHhCCCCCeEE-EecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhccCCCeEEEEECCCC
Confidence 45788888764 3333 34568999999999999999886621 2334444333332 78999999998
Q ss_pred CHHHHHHHHHcCCCEEEEcHHH
Q 021614 231 RGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 231 ~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
.+++.++.+.|||++.+|+.+
T Consensus 238 -~~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 238 -LENIRAYAETGVDVISTGALT 258 (269)
T ss_pred -HHHHHHHHHcCCCEEEEcHHH
Confidence 899999999999999997654
No 206
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.65 E-value=0.00057 Score=58.49 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHcCCcEEEEecCCCCCCC--CCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 173 VLTAEDARIAVQAGAAGIIVSNHGARQLD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 173 ~~~~~~a~~~~~aGad~I~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
+-+.++++.+.+.|+|++.++.-..+.-. ..+..+..+.++.+.. ++||++-||| +++++.++..+||++|.+-|
T Consensus 102 ~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~ 178 (180)
T PF02581_consen 102 CHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVIS 178 (180)
T ss_dssp ESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEESH
T ss_pred cCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEe
Confidence 35788899999999999999874322211 1334577777777665 6999999999 58999999999999999987
Q ss_pred HH
Q 021614 251 PV 252 (310)
Q Consensus 251 ~~ 252 (310)
++
T Consensus 179 aI 180 (180)
T PF02581_consen 179 AI 180 (180)
T ss_dssp HH
T ss_pred eC
Confidence 64
No 207
>PRK01362 putative translaldolase; Provisional
Probab=97.63 E-value=0.016 Score=51.10 Aligned_cols=172 Identities=18% Similarity=0.140 Sum_probs=109.9
Q ss_pred HHHHHHHHHHcCCeeEeCCCC------CCCH----HHHHccCCCceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCC
Q 021614 30 EYATARAASAAGTIMTLSSWS------TSSV----EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT 99 (310)
Q Consensus 30 ~~~la~~a~~~g~~~~~~~~~------~~~~----e~i~~~~~~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~ 99 (310)
|..-.+.+.++|.--+++|.- ...+ +++++..++...+|+. ..|.+.+.+..+++.+.+-+ +.|-+.
T Consensus 9 ~~~ei~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~i~g~vs~qv~-~~d~~~m~~~a~~l~~~~~~-i~iKIP- 85 (214)
T PRK01362 9 NVEEIKEANELGVLDGVTTNPSLIAKEGRDFEEVIKEICSIVDGPVSAEVI-ALDAEGMIKEGRELAKIAPN-VVVKIP- 85 (214)
T ss_pred CHHHHHHHHhCCCcceEcCCHHHHHhcCCCHHHHHHHHHHhcCCCEEEEEe-eCCHHHHHHHHHHHHHhCCC-EEEEeC-
Confidence 555566667777666666541 1222 3344444556788887 56777776666666665432 433221
Q ss_pred CCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCHHHH
Q 021614 100 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDA 179 (310)
Q Consensus 100 p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a 179 (310)
.. ..| .+.++.+.+. ++++-+=.+.+.+++
T Consensus 86 -~T----------------------------------~~G--------------~~a~~~L~~~-Gi~v~~T~vfs~~Qa 115 (214)
T PRK01362 86 -MT----------------------------------PEG--------------LKAVKALSKE-GIKTNVTLIFSANQA 115 (214)
T ss_pred -CC----------------------------------HHH--------------HHHHHHHHHC-CCceEEeeecCHHHH
Confidence 10 001 2446666554 677777778999999
Q ss_pred HHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhc---CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHh
Q 021614 180 RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 256 (310)
Q Consensus 180 ~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~ 256 (310)
..+.++|+++|... -||-.+.+...+..+.++.+.+. .+..|++ ..+++..++.++..+|||.+-+.-.++..+
T Consensus 116 ~~Aa~aGa~yispy--vgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~~~~v~~~~~~G~d~iTi~~~vl~~l 192 (214)
T PRK01362 116 LLAAKAGATYVSPF--VGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRHPMHVLEAALAGADIATIPYKVIKQL 192 (214)
T ss_pred HHHHhcCCcEEEee--cchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCCHHHHHHHHHcCCCEEecCHHHHHHH
Confidence 99999999998653 23433344445566655554432 2444555 569999999999999999999999888776
Q ss_pred h
Q 021614 257 A 257 (310)
Q Consensus 257 ~ 257 (310)
.
T Consensus 193 ~ 193 (214)
T PRK01362 193 F 193 (214)
T ss_pred H
Confidence 4
No 208
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.61 E-value=0.029 Score=51.50 Aligned_cols=108 Identities=25% Similarity=0.330 Sum_probs=74.7
Q ss_pred CCHHHHHHHHH-cCCcEEEEec---CCCCCCCCCcchHHHHHHHHHHhcCCceEEEec--CCCCHHHHHHHHHcCCCEEE
Q 021614 174 LTAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIF 247 (310)
Q Consensus 174 ~~~~~a~~~~~-aGad~I~v~~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G--GI~~~~dv~k~l~~GAd~V~ 247 (310)
.+++++....+ .|+|++.++. ||-.. ....-.++.|.++++.+ ++|+++=| ||. .+++.+++.+|++.|-
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~-~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~-~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKYK-GEPGLDFERLKEIKELT--NIPLVLHGASGIP-EEQIKKAIKLGIAKIN 228 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccC-CCCccCHHHHHHHHHHh--CCCEEEECCCCCC-HHHHHHHHHcCCCEEE
Confidence 36899988886 9999999752 32111 11233577888888876 69999999 998 7889999999999999
Q ss_pred EcHHHHHHhhh-------cc------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021614 248 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 248 ig~~~l~~~~~-------~G------~~~v~~~l~~l~~~l~~~m~~~G~~ 285 (310)
+++.+..+... .. ..-+....+.+.+.+++.|+.+|..
T Consensus 229 v~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 229 IDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred ECcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977553210 00 1113334456666777777777653
No 209
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=97.60 E-value=0.024 Score=50.18 Aligned_cols=172 Identities=15% Similarity=0.112 Sum_probs=108.7
Q ss_pred HHHHHHHHHHcCCeeEeCCCC-------CCCHH----HHHccCC--CceeEEEEecCChHHHHHHHHHHH-HcCCcEEEE
Q 021614 30 EYATARAASAAGTIMTLSSWS-------TSSVE----EVASTGP--GIRFFQLYVYKDRNVVAQLVRRAE-RAGFKAIAL 95 (310)
Q Consensus 30 ~~~la~~a~~~g~~~~~~~~~-------~~~~e----~i~~~~~--~~~~~ql~~~~d~~~~~~~i~~~~-~~G~~~i~i 95 (310)
|..-.+.+.+.|.--+++|.- ...++ ++++..+ .+..+|.+ ..|.+.+.+..+++. ..| +-+.|
T Consensus 9 d~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~~i~~~i~~~~~vs~ev~-~~~~~~mi~eA~~l~~~~~-~nv~V 86 (222)
T PRK12656 9 NLEAIKKWHEILPLAGVTSNPSIAKKEGDIDFFERIREVREIIGDEASIHVQVV-AQDYEGILKDAHEIRRQCG-DDVYI 86 (222)
T ss_pred CHHHHHHHHhcCCcceEeCCHHHHHhcCCCCHHHHHHHHHHHhCCCCcEEEEEE-ECCHHHHHHHHHHHHHHhC-CCEEE
Confidence 556667778888777777741 12333 3444333 36788998 566766666666654 344 22333
Q ss_pred eeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCC
Q 021614 96 TVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT 175 (310)
Q Consensus 96 ~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~ 175 (310)
-+. .. . . ..+.++.+.+. ++++-+=.+++
T Consensus 87 KIP--~T------------------~----------------~--------------Gl~Ai~~L~~~-Gi~vn~T~ifs 115 (222)
T PRK12656 87 KVP--VT------------------P----------------A--------------GLAAIKTLKAE-GYHITATAIYT 115 (222)
T ss_pred EeC--CC------------------H----------------H--------------HHHHHHHHHHC-CCceEEeeeCC
Confidence 221 10 0 0 02446666544 67887777899
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHh---cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
++++..+.++||++|.. .-||-.+.+......+.++.+.+ ..+..|++. .+++..++.++..+|||.+-+.-.+
T Consensus 116 ~~Qa~~Aa~aGa~yvsP--yvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaA-S~r~~~~v~~a~~~G~d~vTvp~~v 192 (222)
T PRK12656 116 VFQGLLAIEAGADYLAP--YYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAA-SFKNVAQVNKAFALGAQAVTAGPDV 192 (222)
T ss_pred HHHHHHHHHCCCCEEec--ccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEE-ecCCHHHHHHHHHcCCCEEecCHHH
Confidence 99999999999999854 33443333333344444444333 235566664 5999999999999999999999988
Q ss_pred HHHhh
Q 021614 253 VYSLA 257 (310)
Q Consensus 253 l~~~~ 257 (310)
+..+.
T Consensus 193 l~~l~ 197 (222)
T PRK12656 193 FEAAF 197 (222)
T ss_pred HHHHh
Confidence 87753
No 210
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.60 E-value=0.00087 Score=60.75 Aligned_cols=87 Identities=24% Similarity=0.361 Sum_probs=59.6
Q ss_pred HHHHHhhCCCCEEEEec--------CCHH---H-HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEE
Q 021614 157 VKWLQTITKLPILVKGV--------LTAE---D-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 224 (310)
Q Consensus 157 i~~ir~~~~~pv~vK~~--------~~~~---~-a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 224 (310)
+.+++..+++|+++... .+.+ . ++.+.++|||+|.++.. ...+.+.++.+.. ++||.
T Consensus 128 i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVv 196 (258)
T TIGR01949 128 IAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVV 196 (258)
T ss_pred HHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEE
Confidence 33444456889887432 1222 2 46778899999986421 2355666665544 69999
Q ss_pred EecCCC--CHH----HHHHHHHcCCCEEEEcHHHHH
Q 021614 225 LDGGVR--RGT----DVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 225 a~GGI~--~~~----dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+.|||+ +.+ .+.+++.+||+++.+||.++.
T Consensus 197 a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 197 VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 999999 544 445556899999999999875
No 211
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.59 E-value=0.00085 Score=61.15 Aligned_cols=88 Identities=23% Similarity=0.234 Sum_probs=66.4
Q ss_pred HHHHHHHhhCC-CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHH
Q 021614 155 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 233 (310)
Q Consensus 155 ~~i~~ir~~~~-~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (310)
..++.+|+..+ ...+.=.+-+.+++..+.++|+|+|-+++- ..+.+.++.+..+.++|+.++|||. .+
T Consensus 170 ~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI~-~~ 238 (268)
T cd01572 170 EAVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGIT-LE 238 (268)
T ss_pred HHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCCC-HH
Confidence 45778888764 222222346889999999999999988652 2455666655543469999999995 99
Q ss_pred HHHHHHHcCCCEEEEcHHHH
Q 021614 234 DVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 234 dv~k~l~~GAd~V~ig~~~l 253 (310)
++.++.+.|+|++.+|+...
T Consensus 239 ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 239 NIRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHHcCCCEEEEEeeec
Confidence 99999999999999998654
No 212
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.59 E-value=0.0031 Score=57.16 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=63.6
Q ss_pred HHHHHHHHhhCCCCEEEEecCC-HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCH
Q 021614 154 WKDVKWLQTITKLPILVKGVLT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 232 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~~~-~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (310)
.++|+++++.+++||+-+.... ..+++.+.++|+|.|..+. +. .|.-+.+..++... ++|+++ +++|.
T Consensus 54 ~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~---r~----rP~~~~~~~iK~~~--~~l~MA--D~stl 122 (283)
T cd04727 54 PKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESE---VL----TPADEEHHIDKHKF--KVPFVC--GARNL 122 (283)
T ss_pred HHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccC---CC----CcHHHHHHHHHHHc--CCcEEc--cCCCH
Confidence 4789999999999999776544 7899999999999995222 11 12233455555543 677777 89999
Q ss_pred HHHHHHHHcCCCEEEE
Q 021614 233 TDVFKALALGASGIFI 248 (310)
Q Consensus 233 ~dv~k~l~~GAd~V~i 248 (310)
+++..+..+|||.|..
T Consensus 123 eEal~a~~~Gad~I~T 138 (283)
T cd04727 123 GEALRRISEGAAMIRT 138 (283)
T ss_pred HHHHHHHHCCCCEEEe
Confidence 9999999999998764
No 213
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.58 E-value=0.0012 Score=59.29 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=35.7
Q ss_pred cHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021614 153 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
..+.++++.+.+++||.+.+....++++.+.++||+.+.++.
T Consensus 64 n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTS 105 (253)
T ss_pred cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECc
Confidence 457899999988999999887666899999999999998864
No 214
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.58 E-value=0.00046 Score=61.68 Aligned_cols=76 Identities=28% Similarity=0.425 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.++.+.+.|+|.+.+-...+. .......+..+.++.+.. .+|++..|||++.+|+.+++.+|||.|.+|+..+.
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~-~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~ 110 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGA-FEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVE 110 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhh-hcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 46688889999999987643211 112245567777777655 79999999999999999999999999999997753
No 215
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.57 E-value=0.0041 Score=53.43 Aligned_cols=155 Identities=24% Similarity=0.285 Sum_probs=98.8
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
+.|.+.+.++++-++..|.+.|++.+ |.. .|. .|.|+++.+ ....+.+..+-+
T Consensus 28 ~P~v~~T~kilkglq~gG~dIIELGv--PfS------------Dp~---------ADGPtIq~~----n~~aL~ng~tl~ 80 (268)
T KOG4175|consen 28 DPDVSTTAKILKGLQSGGSDIIELGV--PFS------------DPL---------ADGPTIQAA----NRRALLNGTTLN 80 (268)
T ss_pred CCcHHHHHHHHHHHhcCCcCeEEecC--ccC------------ccc---------cCCchhhhh----HHHHHHcCCcHH
Confidence 35678889999999999999988744 332 121 133344432 233444445555
Q ss_pred ccHHHHHHHHhh-CCCCEEEEecCCH-------HHHHHHHHcCCcEEEEec---------------CCC---------CC
Q 021614 152 LSWKDVKWLQTI-TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ 199 (310)
Q Consensus 152 ~~~~~i~~ir~~-~~~pv~vK~~~~~-------~~a~~~~~aGad~I~v~~---------------~gg---------~~ 199 (310)
..++++++.|.+ ..+||++-+..++ ...+.+.++|+.++.+-. ||- +.
T Consensus 81 ~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTt 160 (268)
T KOG4175|consen 81 SIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTT 160 (268)
T ss_pred HHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCCh
Confidence 568889999888 6899998775332 236778888888877642 110 00
Q ss_pred ----------CC------------CCcc----hH-HHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHH
Q 021614 200 ----------LD------------YVPA----TI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 200 ----------~~------------~~~~----~~-~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
.| +... .+ +.+.++++.. ++.|+...-||.+++++...=.- ||+|.+|+.+
T Consensus 161 deRmell~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t-~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSki 238 (268)
T KOG4175|consen 161 DERMELLVEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKAT-GDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKI 238 (268)
T ss_pred HHHHHHHHHhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhc-CCCceeEeeccCCHHHHHhhhhh-ccceEecHHH
Confidence 00 1111 11 2234444443 47899999999999999765444 9999999998
Q ss_pred HHH
Q 021614 253 VYS 255 (310)
Q Consensus 253 l~~ 255 (310)
+.-
T Consensus 239 v~l 241 (268)
T KOG4175|consen 239 VKL 241 (268)
T ss_pred HHH
Confidence 763
No 216
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.56 E-value=0.004 Score=56.18 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=55.0
Q ss_pred HHHHHHHHcC-CcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 177 EDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 177 ~~a~~~~~aG-ad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
+.++.+...| +|+|++++.+- +.+..++.+.++++.. .++|++..||++ ++.+.+++.. ||++.+||.|=
T Consensus 161 e~a~~~~~~~~aDavivtG~~T----G~~~d~~~l~~vr~~~-~~~PvllggGvt-~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 161 SIALDTVERGLADAVILSGKTT----GTEVDLELLKLAKETV-KDTPVLAGSGVN-LENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred HHHHHHHHhcCCCEEEECcCCC----CCCCCHHHHHHHHhcc-CCCeEEEECCCC-HHHHHHHHhh-CCEEEECCCcc
Confidence 4577766666 99999998531 2346788888877644 368999999998 9999999987 99999999864
No 217
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.56 E-value=0.00076 Score=58.87 Aligned_cols=84 Identities=27% Similarity=0.331 Sum_probs=62.7
Q ss_pred CcccHHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecC
Q 021614 150 RSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 228 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (310)
.+...+.|+++++.+ ++.|.+..+.+.++++.+.++|+++|+ +.+. +.+ +.+..+. .++|++. |
T Consensus 43 t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-sP~~---------~~~-v~~~~~~--~~i~~iP--G 107 (204)
T TIGR01182 43 TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-SPGL---------TPE-LAKHAQD--HGIPIIP--G 107 (204)
T ss_pred CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE-CCCC---------CHH-HHHHHHH--cCCcEEC--C
Confidence 344567899998876 567778888999999999999999994 4321 112 2222222 3688887 9
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 021614 229 VRRGTDVFKALALGASGIFI 248 (310)
Q Consensus 229 I~~~~dv~k~l~~GAd~V~i 248 (310)
+.|+.++.+++.+||+.|=+
T Consensus 108 ~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 108 VATPSEIMLALELGITALKL 127 (204)
T ss_pred CCCHHHHHHHHHCCCCEEEE
Confidence 99999999999999998743
No 218
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.56 E-value=0.0011 Score=60.68 Aligned_cols=89 Identities=25% Similarity=0.157 Sum_probs=66.8
Q ss_pred HHHHHHHHhhCCCCEEEEe-cCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCH
Q 021614 154 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 232 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (310)
.+.++.+|+..+-..++.. +-+.++++.+.+.|+|+|-+.+ ...+.+.++.+.+..++|+.+.|||. .
T Consensus 175 ~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGIt-~ 243 (277)
T PRK08072 175 TKAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGIT-L 243 (277)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCCC-H
Confidence 3557888887643333333 3678999999999999998743 12355666665554468899999995 9
Q ss_pred HHHHHHHHcCCCEEEEcHHHH
Q 021614 233 TDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 233 ~dv~k~l~~GAd~V~ig~~~l 253 (310)
+++.+..+.|+|.+.+|.+..
T Consensus 244 ~ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 244 ENLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHHcCCCEEEEChhhc
Confidence 999999999999999998654
No 219
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.55 E-value=0.00069 Score=60.28 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.++...+.|++.+.+..-.+. ..........+.++.+.. ++|++++|||++.+|+.+++..||+.|.+|+..+.
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~~-~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDAS-KRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCc-ccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 35678888999999988654321 112245677777777765 78999999999999999999999999999998764
No 220
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=97.55 E-value=0.022 Score=50.35 Aligned_cols=173 Identities=14% Similarity=0.135 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHcCCeeEeCCCC------CCC----HHHHHccCC--CceeEEEEecCChHHHHHHHHHHHHcCCcEEEEe
Q 021614 29 GEYATARAASAAGTIMTLSSWS------TSS----VEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 96 (310)
Q Consensus 29 ~~~~la~~a~~~g~~~~~~~~~------~~~----~e~i~~~~~--~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~ 96 (310)
+|..-.+.+.+.|.--+|+|.- ..+ ++++++..+ ++.++|+. ..|.+.+.+..+++.+.+-+ +.|-
T Consensus 8 A~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~Qv~-~~d~e~mi~ea~~l~~~~~n-i~IK 85 (220)
T PRK12653 8 SDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQVM-ATTAEGMVNDARKLRSIIAD-IVVK 85 (220)
T ss_pred CCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCcEEEEEe-cCCHHHHHHHHHHHHHhCCC-EEEE
Confidence 3566677777888777777742 122 234444332 36777997 56777776666666665533 3332
Q ss_pred eCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCH
Q 021614 97 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 176 (310)
Q Consensus 97 ~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~ 176 (310)
+. .. ..| .+.++.+.++ ++++-+=.++|.
T Consensus 86 IP--~T----------------------------------~~G--------------l~A~~~L~~~-GI~vn~T~vfs~ 114 (220)
T PRK12653 86 VP--VT----------------------------------AEG--------------LAAIKMLKAE-GIPTLGTAVYGA 114 (220)
T ss_pred eC--CC----------------------------------HHH--------------HHHHHHHHHc-CCCeeEEEecCH
Confidence 21 10 001 2446666554 677777778999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHh---cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
+++..+..+||++|...- ||-.+.+...+..+.++.+.+ ..+..|++ ..+++..++.+++.+|||.+-+.-.++
T Consensus 115 ~Qa~~Aa~aGa~yIspyv--gR~~~~g~dg~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~~vl 191 (220)
T PRK12653 115 AQGLLSALAGAEYVAPYV--NRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLA-ASFKTPRQALDCLLAGCESITLPLDVA 191 (220)
T ss_pred HHHHHHHhcCCcEEEeec--ChHhhcCCChHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCHHHH
Confidence 999999999999986542 332222333344444444333 23455555 569999999999999999999999998
Q ss_pred HHhh
Q 021614 254 YSLA 257 (310)
Q Consensus 254 ~~~~ 257 (310)
..+.
T Consensus 192 ~~l~ 195 (220)
T PRK12653 192 QQMI 195 (220)
T ss_pred HHHH
Confidence 8764
No 221
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00078 Score=59.04 Aligned_cols=76 Identities=25% Similarity=0.285 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.|+.-.+.|||-++.-.-+.+ .++....++.+.++++.+ .+|+...|||++.+|+.+.|.+|||-|.+.++-+.
T Consensus 33 VelA~~Y~e~GADElvFlDItAs-~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITAS-SEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred HHHHHHHHHcCCCeEEEEecccc-cccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 47789999999999976432211 122345677788877766 79999999999999999999999999999998765
No 222
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.52 E-value=0.00067 Score=60.63 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=59.0
Q ss_pred HHHHHHHH-cCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 177 EDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 177 ~~a~~~~~-aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+.|+...+ .|+|.+++..-.+. ..+.+.....+.++.+.+ .+||.+.|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 35 ~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~ 110 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQ 110 (234)
T ss_pred HHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhc
Confidence 56777777 69999988653221 112345677888887755 69999999999999999999999999999997653
No 223
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.52 E-value=0.00052 Score=61.07 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
+.++...+. ++.+++....|.. .+.++.+..+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|++.+
T Consensus 34 ~~a~~~~~~-~~~l~ivDldga~-~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 34 EIALRFSEY-VDKIHVVDLDGAF-EGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred HHHHHHHHh-CCEEEEEECcchh-cCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 446666676 8888774432221 12345677888887664 7999999999999999999999999999999765
No 224
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.52 E-value=0.013 Score=58.23 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
.+.++.+.++|+|.|.+....|.+ ...|+.+.++++..+ +++||+ |+|.|.+++..++.+|||+|.+|
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~----~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDS----IYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCc----HHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 467899999999999998754332 234677777776542 455554 88999999999999999999775
No 225
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.52 E-value=0.0013 Score=56.27 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=57.0
Q ss_pred HHHHHHHHhhCCCCEE--EEec---------CCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCce
Q 021614 154 WKDVKWLQTITKLPIL--VKGV---------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 222 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~--vK~~---------~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 222 (310)
.+.|+.+|+.+++||| +|-. .|.+++..+.++|+|.|-+..+.... ..+..+.+.++++. ...
T Consensus 21 ~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~R---p~~l~~li~~i~~~---~~l 94 (192)
T PF04131_consen 21 VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPR---PETLEELIREIKEK---YQL 94 (192)
T ss_dssp HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS----SS-HHHHHHHHHHC---TSE
T ss_pred HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCC---CcCHHHHHHHHHHh---CcE
Confidence 4789999999999987 3421 45789999999999999998754321 12233445555543 255
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 223 VFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 223 via~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
+|+ .|.|.+|...+..+|+|.|..-
T Consensus 95 ~MA--Dist~ee~~~A~~~G~D~I~TT 119 (192)
T PF04131_consen 95 VMA--DISTLEEAINAAELGFDIIGTT 119 (192)
T ss_dssp EEE--E-SSHHHHHHHHHTT-SEEE-T
T ss_pred Eee--ecCCHHHHHHHHHcCCCEEEcc
Confidence 665 6899999999999999997644
No 226
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.50 E-value=0.0019 Score=58.56 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=64.1
Q ss_pred HHHHHHHHhhCCCCEEEEecCC-HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCH
Q 021614 154 WKDVKWLQTITKLPILVKGVLT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 232 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~~~-~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (310)
.++|+++++.+++||+-|.... ..+++.+.++|+|+|.-+.. ..|.-+.+..+++.+ ++|+++ |++|.
T Consensus 56 p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~-------lrPade~~~~~K~~f--~vpfma--d~~~l 124 (287)
T TIGR00343 56 PKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEV-------LTPADWTFHIDKKKF--KVPFVC--GARDL 124 (287)
T ss_pred HHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCC-------CCcHHHHHHHHHHHc--CCCEEc--cCCCH
Confidence 4789999999999999888754 78999999999999953221 112333444444443 677776 89999
Q ss_pred HHHHHHHHcCCCEEEE
Q 021614 233 TDVFKALALGASGIFI 248 (310)
Q Consensus 233 ~dv~k~l~~GAd~V~i 248 (310)
+++..++.+|||.|..
T Consensus 125 ~EAlrai~~GadmI~T 140 (287)
T TIGR00343 125 GEALRRINEGAAMIRT 140 (287)
T ss_pred HHHHHHHHCCCCEEec
Confidence 9999999999998654
No 227
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.50 E-value=0.0043 Score=54.45 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=54.0
Q ss_pred HHHHHHhhCCCCEEEEec-CC-HHHHHHHHHcCCcEEEEecC-CCCCC-CCCcchHHHHHHHHHHhcC---CceEEEecC
Q 021614 156 DVKWLQTITKLPILVKGV-LT-AEDARIAVQAGAAGIIVSNH-GARQL-DYVPATIMALEEVVKATQG---RIPVFLDGG 228 (310)
Q Consensus 156 ~i~~ir~~~~~pv~vK~~-~~-~~~a~~~~~aGad~I~v~~~-gg~~~-~~~~~~~~~l~~i~~~~~~---~ipvia~GG 228 (310)
.++.+++. ++.+++-.. .+ .+.++. ...++|+|.+... .|... ...+...+.+.++++.... ..+|++.||
T Consensus 101 ~~~~~~~~-~~~~g~~~~~~t~~e~~~~-~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG 178 (220)
T PRK05581 101 LLQLIKSA-GIKAGLVLNPATPLEPLED-VLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGG 178 (220)
T ss_pred HHHHHHHc-CCEEEEEECCCCCHHHHHH-HHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence 35555443 333333222 23 333443 3456898877542 22211 1112223344444433211 145778999
Q ss_pred CCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 229 VRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 229 I~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
|+. +++.+++..|+|.|.+||+++.
T Consensus 179 I~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 179 INA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred CCH-HHHHHHHHcCCCEEEEChhhhC
Confidence 997 8999999899999999999874
No 228
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.49 E-value=0.0015 Score=56.96 Aligned_cols=99 Identities=22% Similarity=0.267 Sum_probs=64.0
Q ss_pred HHHHHHHHhhCCCCEEEEec-CCHH-HHHHHHHcCCcEEEEecC---------------C---------CCC--------
Q 021614 154 WKDVKWLQTITKLPILVKGV-LTAE-DARIAVQAGAAGIIVSNH---------------G---------ARQ-------- 199 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~-~~~~-~a~~~~~aGad~I~v~~~---------------g---------g~~-------- 199 (310)
.+.++++|+.+++|+-+=+. .+++ ..+...++|+|.|.++-. | ++.
T Consensus 46 ~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l 125 (201)
T PF00834_consen 46 PDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYL 125 (201)
T ss_dssp HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTG
T ss_pred HHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHh
Confidence 46788888888888776643 3443 467788888888887631 1 010
Q ss_pred --CC-----------CC----cchHHHHHHHHHHh---cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 200 --LD-----------YV----PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 200 --~~-----------~~----~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
.| +| +..++-+.++++.. ..++.|.++|||+ .+.+.++.++|||.+.+||.++
T Consensus 126 ~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~-~~~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 126 DQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGIN-EENIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp CCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSES-TTTHHHHHHHT--EEEESHHHH
T ss_pred hhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCC-HHHHHHHHHcCCCEEEECHHHh
Confidence 01 12 23444444444332 2368999999998 5688889999999999999865
No 229
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=97.49 E-value=0.027 Score=49.85 Aligned_cols=187 Identities=17% Similarity=0.136 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHcCCeeEeCCCC------CCC----HHHHHccCC--CceeEEEEecCChHHHHHHHHHHHHcCCcEEEEe
Q 021614 29 GEYATARAASAAGTIMTLSSWS------TSS----VEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 96 (310)
Q Consensus 29 ~~~~la~~a~~~g~~~~~~~~~------~~~----~e~i~~~~~--~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~ 96 (310)
+|..-.+.+.+.|.--+|+|.- ..+ ++++++..+ ++.++|.. ..|.+.+.+..+++.+.+-+ +.|-
T Consensus 8 A~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~qv~-~~d~e~mi~eA~~l~~~~~n-v~IK 85 (220)
T PRK12655 8 ANVAEVERLARIFPIAGVTTNPSIIAASKESIWEVLPRLQKAIGGEGILFAQTM-SRDAQGMVEEAKRLRNAIPG-IVVK 85 (220)
T ss_pred CCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCCEEEEEe-eCCHHHHHHHHHHHHHhCCC-EEEE
Confidence 3556667777878777777642 122 234444332 46777997 56777766666666655533 3332
Q ss_pred eCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCH
Q 021614 97 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 176 (310)
Q Consensus 97 ~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~ 176 (310)
+. .. ..| .+.++.+.++ ++++-+=.++|.
T Consensus 86 IP--~T----------------------------------~~G--------------l~Ai~~L~~~-GI~vn~T~vfs~ 114 (220)
T PRK12655 86 IP--VT----------------------------------AEG--------------LAAIKKLKKE-GIPTLGTAVYSA 114 (220)
T ss_pred eC--CC----------------------------------HHH--------------HHHHHHHHHC-CCceeEeEecCH
Confidence 21 10 001 2445666554 677777778999
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHh---cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
+++..+..+|+++|...- ||-.+.+......+.++.+.+ ..+..|++ ..+++..++.+++.+|||.+-+.-.++
T Consensus 115 ~Qa~~Aa~aGa~yIspyv--gR~~~~g~dg~~~i~~~~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~~vl 191 (220)
T PRK12655 115 AQGLLAALAGAKYVAPYV--NRVDAQGGDGIRMVQELQTLLEMHAPESMVLA-ASFKTPRQALDCLLAGCQSITLPLDVA 191 (220)
T ss_pred HHHHHHHHcCCeEEEeec--chHhHcCCCHHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCHHHH
Confidence 999999999999886432 332222333344454544433 23455655 569999999999999999999999988
Q ss_pred HHhhhcc--HHHHHHHHHHH
Q 021614 254 YSLAAEG--EKGVRRVLEML 271 (310)
Q Consensus 254 ~~~~~~G--~~~v~~~l~~l 271 (310)
..+...- ..+++++.+.|
T Consensus 192 ~~l~~~p~t~~~~~~F~~dw 211 (220)
T PRK12655 192 QQMLNTPAVESAIEKFEQDW 211 (220)
T ss_pred HHHHcCCChHHHHHHHHHHH
Confidence 8764322 24454444444
No 230
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.47 E-value=0.002 Score=57.20 Aligned_cols=76 Identities=30% Similarity=0.448 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.++...+.|++.+.+..-.+.. .+.....+.+.++.+.. .+|+...|||++.+|+.+++.+|||.|.+|+..+.
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~~-~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGAK-EGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc-cCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 356788889999999986533221 12334677778877765 68999999999999999999999999999987764
No 231
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.46 E-value=0.00069 Score=60.92 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.|+.-.++|++.+++-.- +.+..+.+.++.+.+ .+||...||||+ +++.+++.+||+.|.+|+..+.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 57899999999999987643 223677788887765 699999999997 9999999999999999998764
No 232
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.46 E-value=0.0018 Score=59.14 Aligned_cols=87 Identities=24% Similarity=0.297 Sum_probs=65.3
Q ss_pred HHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHh-----cCCceEEEecC
Q 021614 155 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGG 228 (310)
Q Consensus 155 ~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvia~GG 228 (310)
+.++.+|+.. ..+|.| .+-+.+++..+.++|+|.|.+.|- +.+.+.++.+.+ +.++.+.++||
T Consensus 171 ~av~~~r~~~~~~kIeV-Ev~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSGG 239 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEV-EVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSGG 239 (278)
T ss_pred HHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEECC
Confidence 5577787764 355443 557899999999999999988773 123333333322 24688999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 229 VRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 229 I~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
| +.+.+.++...|+|.+.+|++..
T Consensus 240 I-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 240 I-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhc
Confidence 9 69999999999999999998764
No 233
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.45 E-value=0.0013 Score=58.49 Aligned_cols=66 Identities=24% Similarity=0.330 Sum_probs=51.4
Q ss_pred HcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCc-eEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 184 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 184 ~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~i-pvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
-.|...+.+...++. +.+...+.+.++++.+ +. |++..|||++.+++.+++..|||+|.+|+.+..
T Consensus 152 ~~g~~~vYle~gs~~---g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 152 YLGMPIVYLEYGGGA---GDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred HcCCCeEEEECCCCC---CCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 347676666543222 2445677788887765 56 999999999999999999999999999999875
No 234
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.45 E-value=0.002 Score=58.97 Aligned_cols=88 Identities=20% Similarity=0.179 Sum_probs=68.9
Q ss_pred HHHHHHHHhhCC--CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCC
Q 021614 154 WKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 231 (310)
Q Consensus 154 ~~~i~~ir~~~~--~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (310)
.+.++++|+..+ .+|.| .+-+.+++..+.++|+|.|.+.|- +.+.+.++.+.++.+.++-++|||.
T Consensus 181 ~~ai~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI~- 248 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRIT- 248 (281)
T ss_pred HHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCCC-
Confidence 356888888764 45544 557899999999999999998873 2345555555555678999999998
Q ss_pred HHHHHHHHHcCCCEEEEcHHHH
Q 021614 232 GTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 232 ~~dv~k~l~~GAd~V~ig~~~l 253 (310)
.+.+.++...|+|.+.+|....
T Consensus 249 ~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 249 PETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHHHhcCCCEEEeChhhc
Confidence 8999999999999999998654
No 235
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.45 E-value=0.0018 Score=54.93 Aligned_cols=92 Identities=23% Similarity=0.234 Sum_probs=64.8
Q ss_pred HHHHHHHHhhCC-CC-EEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCC
Q 021614 154 WKDVKWLQTITK-LP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 231 (310)
Q Consensus 154 ~~~i~~ir~~~~-~p-v~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (310)
.+.++.+++..+ .+ |.| .+-+.+++..+.++|+|.|.+.+. .+..+..+.+..+....++.+.++|||.
T Consensus 67 ~~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~lD~~-------~~~~~~~~v~~l~~~~~~v~ie~SGGI~- 137 (169)
T PF01729_consen 67 EEAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADIIMLDNM-------SPEDLKEAVEELRELNPRVKIEASGGIT- 137 (169)
T ss_dssp HHHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEEEEES--------CHHHHHHHHHHHHHHTTTSEEEEESSSS-
T ss_pred HHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEEEecCc-------CHHHHHHHHHHHhhcCCcEEEEEECCCC-
Confidence 355778887763 33 444 557889999999999999999873 2323322222222444579999999997
Q ss_pred HHHHHHHHHcCCCEEEEcHHHHH
Q 021614 232 GTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 232 ~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.+.++...|+|.+.+|+....
T Consensus 138 ~~ni~~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 138 LENIAEYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp TTTHHHHHHTT-SEEEECHHHHS
T ss_pred HHHHHHHHhcCCCEEEcChhhcC
Confidence 89999999999999999987653
No 236
>PRK12376 putative translaldolase; Provisional
Probab=97.44 E-value=0.063 Score=47.97 Aligned_cols=177 Identities=15% Similarity=0.159 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHcCCeeEeCCCC-------CCCHHH----HHccCC-CceeEEEEecCChHHHHHHHHHHHHcCCcEEEEe
Q 021614 29 GEYATARAASAAGTIMTLSSWS-------TSSVEE----VASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 96 (310)
Q Consensus 29 ~~~~la~~a~~~g~~~~~~~~~-------~~~~e~----i~~~~~-~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~ 96 (310)
+|..-.+.+.+.|.--+++|.- ...+++ +++..+ ++..+|+. ..|.+.+.+..+++.+.+-+ +.|-
T Consensus 13 Ad~~eik~~~~~g~i~GVTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~mv~eA~~l~~~~~n-v~VK 90 (236)
T PRK12376 13 ADLEEMLAAYKNPLVKGFTTNPSLMRKAGVTDYKAFAKEVLAEIPDAPISFEVF-ADDLETMEKEAEKIASLGEN-VYVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEECCHHHHHhcCCCCHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHHHHHhCCC-eEEE
Confidence 4667777888888888887752 123333 333333 36788886 66777776666666666543 4443
Q ss_pred eCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCH
Q 021614 97 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 176 (310)
Q Consensus 97 ~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~ 176 (310)
+.+-.. .| ....+.++.+.++ ++++-+=.++++
T Consensus 91 IP~T~~-----------------------------------~G-----------~~gl~Ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T PRK12376 91 IPITNT-----------------------------------KG-----------ESTIPLIKKLSAD-GVKLNVTAIFTI 123 (236)
T ss_pred ECCcCc-----------------------------------cc-----------hhHHHHHHHHHHC-CCeEEEeeecCH
Confidence 321000 00 0012456666554 778877778999
Q ss_pred HHHHHHHHc----CCcEEEEecCCCCCCCCCcchHHHHHHHHHHhc--CCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 177 EDARIAVQA----GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 177 ~~a~~~~~a----Gad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
.++..+.++ |+++|...- ||-.|.+......+.++.+.+. .+..|++. .||+..++.+++.+|||.+-+.-
T Consensus 124 ~Qa~~a~~A~ag~ga~yispfv--gR~dd~g~D~~~~i~~i~~i~~~~~~tkILaA-SiR~~~~v~~a~~~Gad~vTvp~ 200 (236)
T PRK12376 124 EQVKEVVDALTPGVPAIVSVFA--GRIADTGVDPVPLMKEALAICHSKPGVELLWA-SPREVYNIIQADQLGCDIITVTP 200 (236)
T ss_pred HHHHHHHHHhcCCCCeEEEEec--chhhhcCCCcHHHHHHHHHHHHhCCCcEEEEE-ecCCHHHHHHHHHcCCCEEEcCH
Confidence 988755555 588886543 3433334344555555544332 35667764 59999999999999999999999
Q ss_pred HHHHHhh
Q 021614 251 PVVYSLA 257 (310)
Q Consensus 251 ~~l~~~~ 257 (310)
.++..+.
T Consensus 201 ~v~~~l~ 207 (236)
T PRK12376 201 DVLKKLP 207 (236)
T ss_pred HHHHHHH
Confidence 8887754
No 237
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.42 E-value=0.002 Score=58.46 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.++...+.|++.+.+..-.+.. ....+....+.++.+.. .+||+++|||++.+|+.+++.+|++.|.+|+..+.
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~~-~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDASK-RGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCc-CCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 356888999999999987532211 11245677888887764 79999999999999999999999999999997754
No 238
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.40 E-value=0.0041 Score=54.71 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHcCCcEEEEecCCCCCCC---CCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 174 LTAEDARIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 174 ~~~~~a~~~~~aGad~I~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
-+.+++..+.+.|+|++.++.-..+... ..+..+..+.++.+.. .++||++-|||. .+++.+.+++||++|.+-+
T Consensus 110 H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvis 187 (211)
T PRK03512 110 HDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVVS 187 (211)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEhh
Confidence 4678889999999999998764332211 1223455666655442 269999999998 8999999999999999999
Q ss_pred HHHH
Q 021614 251 PVVY 254 (310)
Q Consensus 251 ~~l~ 254 (310)
.++.
T Consensus 188 ai~~ 191 (211)
T PRK03512 188 AITQ 191 (211)
T ss_pred HhhC
Confidence 9874
No 239
>PRK06801 hypothetical protein; Provisional
Probab=97.38 E-value=0.032 Score=51.29 Aligned_cols=78 Identities=22% Similarity=0.251 Sum_probs=59.7
Q ss_pred CHHHHHHHH-HcCCcEEEEecCCCCCCCCC--cchHHHHHHHHHHhcCCceEEEecC--CCCHHHHHHHHHcCCCEEEEc
Q 021614 175 TAEDARIAV-QAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 175 ~~~~a~~~~-~aGad~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvia~GG--I~~~~dv~k~l~~GAd~V~ig 249 (310)
+++++.... +.|+|++.++...-+..+.+ ...++.+.++++.+ ++|++.-|| |. .+++.+++.+|++.|-++
T Consensus 157 ~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 157 DPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKINFY 233 (286)
T ss_pred CHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEEeh
Confidence 568888777 89999999954222222222 24678888887766 699999998 87 688999999999999999
Q ss_pred HHHHHH
Q 021614 250 RPVVYS 255 (310)
Q Consensus 250 ~~~l~~ 255 (310)
+.+..+
T Consensus 234 T~~~~a 239 (286)
T PRK06801 234 TGMSQA 239 (286)
T ss_pred hHHHHH
Confidence 987654
No 240
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.37 E-value=0.0023 Score=58.67 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=68.4
Q ss_pred HHHHHHHHhhCC--CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCC
Q 021614 154 WKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 231 (310)
Q Consensus 154 ~~~i~~ir~~~~--~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (310)
.+.++++|+..+ .+|.| .+-+.+++..+.++|+|.|.+.|- +.+.+.++.+.++.++.+-++|||.
T Consensus 184 ~~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI~- 251 (290)
T PRK06559 184 QKAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNID- 251 (290)
T ss_pred HHHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCCC-
Confidence 356888888754 44444 457899999999999999998873 2444555555555578999999998
Q ss_pred HHHHHHHHHcCCCEEEEcHHHH
Q 021614 232 GTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 232 ~~dv~k~l~~GAd~V~ig~~~l 253 (310)
.+.+.++...|+|.+.+|....
T Consensus 252 ~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 252 MTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHHHhcCCCEEEeCcccc
Confidence 8999999899999999998654
No 241
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.35 E-value=0.0012 Score=58.83 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
.+.|+...+.|+|.+++..-.+. .+.......+.++.+.+ .+|+...|||++.+|+.+++.+||+.|.+|+..+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 45688889999999998653322 13345677777777665 6899999999999999999999999999999654
No 242
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.33 E-value=0.0013 Score=58.61 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCcEEEEecC--CCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 177 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+.++.+.+.|+..|.+..- -|+. .| +.++.+..+.+. ..|++++|||++.+|+.++..+|+++|.+|++++.
T Consensus 150 e~~~~l~~~g~~~ii~tdI~~dGt~--~G-~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 150 DGIKKVNELELLGIIFTYISNEGTT--KG-IDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred HHHHHHHhcCCCEEEEecccccccC--cC-cCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 5678899999988877652 2322 12 456666666543 34699999999999999999999999999999874
No 243
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.32 E-value=0.0039 Score=60.06 Aligned_cols=95 Identities=16% Similarity=0.102 Sum_probs=66.3
Q ss_pred HHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEecCCCCCC---CCCcchHHHHHHHHHHhc-------CCceEEEec
Q 021614 159 WLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQL---DYVPATIMALEEVVKATQ-------GRIPVFLDG 227 (310)
Q Consensus 159 ~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~~gg~~~---~~~~~~~~~l~~i~~~~~-------~~ipvia~G 227 (310)
.+|+..+--.+++.. -+.+++.++.+.|+|+|.++.-..+.. ...+..++.+.++.+.+. ..+|+++-|
T Consensus 292 ~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIG 371 (437)
T PRK12290 292 NLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIG 371 (437)
T ss_pred hhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEEC
Confidence 344443323445554 468899999999999998875322221 122334666666554432 269999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 228 GVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 228 GI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
||. .+++.++++.||++|.+-|+++.
T Consensus 372 GI~-~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 372 GID-QSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred CcC-HHHHHHHHHcCCCEEEEehHhhc
Confidence 994 99999999999999999999874
No 244
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.32 E-value=0.003 Score=57.06 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=57.6
Q ss_pred CHHH-HHHHHHcCCcEEEEecC--CCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHc--CCCEEEEc
Q 021614 175 TAED-ARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL--GASGIFIG 249 (310)
Q Consensus 175 ~~~~-a~~~~~aGad~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~--GAd~V~ig 249 (310)
++.+ +....+.|++.|.+..- .|+. ..+.++.+.++.+.. ++|||++|||++.+|+.+...+ |..+|.+|
T Consensus 164 ~~~e~~~~~~~~g~~eii~TdI~rDGtl---~G~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~g~g~~gvIvG 238 (262)
T PLN02446 164 AVDEETLEFLAAYCDEFLVHGVDVEGKR---LGIDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVG 238 (262)
T ss_pred CHHHHHHHHHHhCCCEEEEEEEcCCCcc---cCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEE
Confidence 3444 68889999999988652 2221 124677788887765 7999999999999999998887 57899999
Q ss_pred HHHH
Q 021614 250 RPVV 253 (310)
Q Consensus 250 ~~~l 253 (310)
+++.
T Consensus 239 kAl~ 242 (262)
T PLN02446 239 SALD 242 (262)
T ss_pred eeHH
Confidence 9984
No 245
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.29 E-value=0.0023 Score=56.37 Aligned_cols=83 Identities=27% Similarity=0.251 Sum_probs=61.9
Q ss_pred cccHHHHHHHHhhCC----CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEe
Q 021614 151 SLSWKDVKWLQTITK----LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 226 (310)
Q Consensus 151 ~~~~~~i~~ir~~~~----~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~ 226 (310)
+...+.|+.+++.++ +-|.+..+.+.++++.+.++|+++|+ +.+. ..+ +.+..+. .++|++-
T Consensus 49 ~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv-sP~~---------~~~-v~~~~~~--~~i~~iP- 114 (213)
T PRK06552 49 PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV-SPSF---------NRE-TAKICNL--YQIPYLP- 114 (213)
T ss_pred ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-CCCC---------CHH-HHHHHHH--cCCCEEC-
Confidence 345678999988763 45666678999999999999999995 3321 112 2222222 2677776
Q ss_pred cCCCCHHHHHHHHHcCCCEEEE
Q 021614 227 GGVRRGTDVFKALALGASGIFI 248 (310)
Q Consensus 227 GGI~~~~dv~k~l~~GAd~V~i 248 (310)
|+.|+.++.+++.+|||.+.+
T Consensus 115 -G~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 115 -GCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred -CcCCHHHHHHHHHcCCCEEEE
Confidence 999999999999999999998
No 246
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.29 E-value=0.0015 Score=58.22 Aligned_cols=76 Identities=25% Similarity=0.354 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.|+...+.|++.+.+..-.+. ..+.+.....+.++.+.. .+|+...|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 32 ~~~a~~~~~~g~~~l~ivDLdaa-~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 32 VEVAKAFNEQGADELHIVDLDAA-KEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEEHHHH-CCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEccCc-ccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 35678888999999987642111 112345677788887765 59999999999999999999999999999998765
No 247
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.28 E-value=0.0042 Score=61.70 Aligned_cols=94 Identities=19% Similarity=0.219 Sum_probs=66.4
Q ss_pred HHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEecCCCCCC-C-CCcchHHHHHHHHHHhcCCceEEEecCCCCHHH
Q 021614 158 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQL-D-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 234 (310)
Q Consensus 158 ~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~~gg~~~-~-~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d 234 (310)
...|+..+...++... -+.+++..+.+.|+|+|.++.-..+.. . ..+..++.+.++.+.. ++||++-|||. .++
T Consensus 381 ~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~~ 457 (502)
T PLN02898 381 RLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-ASN 457 (502)
T ss_pred HHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HHH
Confidence 4445544333444443 578899999999999998765322211 1 1223466666665544 79999999996 999
Q ss_pred HHHHHHcCCC---EEEEcHHHHH
Q 021614 235 VFKALALGAS---GIFIGRPVVY 254 (310)
Q Consensus 235 v~k~l~~GAd---~V~ig~~~l~ 254 (310)
+.+++++||+ +|.+++.++.
T Consensus 458 ~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 458 AASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHHHcCCCcCceEEEEeHHhc
Confidence 9999999999 9999999874
No 248
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.26 E-value=0.0038 Score=57.10 Aligned_cols=88 Identities=20% Similarity=0.194 Sum_probs=68.1
Q ss_pred HHHHHHHHhhCC--CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCC
Q 021614 154 WKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 231 (310)
Q Consensus 154 ~~~i~~ir~~~~--~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (310)
.+.++++|+..+ .+|.| .+-+.+++..+.++|+|.|.+.|- +.+.+.++.+.++.+..+-++|||.
T Consensus 180 ~~av~~~r~~~~~~~kIeV-Ev~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI~- 247 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVEV-EVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNVN- 247 (281)
T ss_pred HHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCCC-
Confidence 356888887754 44443 567899999999999999998873 2444555555555577899999997
Q ss_pred HHHHHHHHHcCCCEEEEcHHHH
Q 021614 232 GTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 232 ~~dv~k~l~~GAd~V~ig~~~l 253 (310)
.+.+.++...|+|.+.+|....
T Consensus 248 ~~ni~~yA~tGVD~Is~galth 269 (281)
T PRK06543 248 LNTVGAIASTGVDVISVGALTH 269 (281)
T ss_pred HHHHHHHHhcCCCEEEeCcccc
Confidence 8999999999999999998543
No 249
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.26 E-value=0.0089 Score=53.90 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=54.0
Q ss_pred HHHHHH-HHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 177 EDARIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 177 ~~a~~~-~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+.++.+ ...++|+|++++.. .+.+++.+.+.++++.+ .+||+..+|+. .+.+.+.|.. ||++.+||.|-.
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGvt-~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGVT-PENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCCC-HHHHHHHHHh-CCEEEEeeeeee
Confidence 334444 67899999998742 12456788888888776 39999999997 8999888754 999999998754
No 250
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.25 E-value=0.024 Score=52.00 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=64.5
Q ss_pred HHHHHHHHhhCC-CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHh---cCCceEEEecCC
Q 021614 154 WKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGV 229 (310)
Q Consensus 154 ~~~i~~ir~~~~-~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI 229 (310)
.+.++.+|+..+ .+|.| .+-+.++++.+.++|+|.|.+.|. +.+.+.++.+.+ ..++.+-++|||
T Consensus 177 ~~av~~~r~~~~~~kIeV-Ev~tleqa~ea~~agaDiI~LDn~----------~~e~l~~av~~~~~~~~~~~leaSGGI 245 (284)
T PRK06096 177 SGAINQLRRHAPEKKIVV-EADTPKEAIAALRAQPDVLQLDKF----------SPQQATEIAQIAPSLAPHCTLSLAGGI 245 (284)
T ss_pred HHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 356888887653 44443 557899999999999999998763 223344443333 257899999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcHH
Q 021614 230 RRGTDVFKALALGASGIFIGRP 251 (310)
Q Consensus 230 ~~~~dv~k~l~~GAd~V~ig~~ 251 (310)
. .+.+.++...|+|.+.+|..
T Consensus 246 ~-~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 246 N-LNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred C-HHHHHHHHhcCCCEEEECcc
Confidence 8 89999999999999998875
No 251
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=97.24 E-value=0.14 Score=45.78 Aligned_cols=177 Identities=12% Similarity=0.072 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHcCCeeEeCCCC------C-CCHHHHHc-----cCCCceeEEEEecCChHHHHHHHHHHHHcCCcEEEEe
Q 021614 29 GEYATARAASAAGTIMTLSSWS------T-SSVEEVAS-----TGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 96 (310)
Q Consensus 29 ~~~~la~~a~~~g~~~~~~~~~------~-~~~e~i~~-----~~~~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~ 96 (310)
+|..-.+.+.+.|.--+++|.- . ..++++.+ ..+++..+|++ ..|.+.+.+..+++.+.+-+ +.|-
T Consensus 13 Ad~~ei~~~~~~g~i~GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~m~~eA~~l~~~~~n-v~VK 90 (236)
T TIGR02134 13 ANLEEMVKFSTHPYVKGFTTNPSLMRKAGIVDYEAFAHEALAQITDLPISFEVF-ADDLDEMEKEARYIASWGNN-VNVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEeCCHHHHHhcCCCCHHHHHHHHHHHccCCcEEEEEe-cCCHHHHHHHHHHHHhcCCC-eEEE
Confidence 3667777888888888887752 1 23433322 22347788997 67777777777777666643 4443
Q ss_pred eCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEecCCH
Q 021614 97 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 176 (310)
Q Consensus 97 ~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~~~~ 176 (310)
+. .. . .+ + +...+.++.+++. ++++-+=.+.|+
T Consensus 91 IP--~T------------------~----------------~~-G---------~~~l~ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T TIGR02134 91 IP--VT------------------N----------------TK-G---------ESTGPLIQKLSAD-GITLNVTALTTI 123 (236)
T ss_pred EC--Cc------------------C----------------cc-c---------chHHHHHHHHHHC-CCcEEeehcCCH
Confidence 32 11 0 00 0 0013556667655 677777778899
Q ss_pred HHHHHH---HHcC-CcEEEEecCCCCCCCCCcchHHHHHHHHHHhc--CCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 177 EDARIA---VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 177 ~~a~~~---~~aG-ad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
.++..+ ..+| +++|...- ||-.|.+......+.++.+.+. .+..|++. .+|+..++.++..+|||.+-+.-
T Consensus 124 ~Qa~~aa~A~~aG~a~yispfv--gR~dd~g~D~~~~i~~i~~i~~~~~~tkILaA-S~R~~~~v~~a~~~Gad~vTvp~ 200 (236)
T TIGR02134 124 EQVEKVCQSFTDGVPGIVSVFA--GRIADTGVDPEPHMREALEIVAQKPGVELLWA-SPRELFNIIQADRIGCDIITCAH 200 (236)
T ss_pred HHHHHHHHHHhCCCCeEEEEec--chhhhcCCCcHHHHHHHHHHHHhCCCcEEEEE-ccCCHHHHHHHHHcCCCEEECCH
Confidence 888764 4589 68886543 3433333334444544443332 35777775 49999999999999999999998
Q ss_pred HHHHHhh
Q 021614 251 PVVYSLA 257 (310)
Q Consensus 251 ~~l~~~~ 257 (310)
.++..+.
T Consensus 201 ~v~~~l~ 207 (236)
T TIGR02134 201 DILAKLP 207 (236)
T ss_pred HHHHHHH
Confidence 8887763
No 252
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.22 E-value=0.026 Score=51.67 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=64.9
Q ss_pred HHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHh---cCCceEEEecCC
Q 021614 154 WKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGV 229 (310)
Q Consensus 154 ~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvia~GGI 229 (310)
.+.++.+|+.. ..+|.| .+.+.++++.+.++|+|.|.++|. +.+.+.++.+.+ ..++.+-++|||
T Consensus 176 ~~av~~~r~~~~~~kIeV-Ev~tleea~ea~~~GaDiI~lDn~----------~~e~l~~~v~~l~~~~~~~~leasGGI 244 (277)
T TIGR01334 176 GGAIGRLKQTAPERKITV-EADTIEQALTVLQASPDILQLDKF----------TPQQLHHLHERLKFFDHIPTLAAAGGI 244 (277)
T ss_pred HHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHhccCCCEEEEEECCC
Confidence 45688888765 344443 456899999999999999998762 122333333333 347889999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcHHH
Q 021614 230 RRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 230 ~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
. .+++.++...|+|.+.+|.+.
T Consensus 245 ~-~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 245 N-PENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred C-HHHHHHHHhcCCCEEEeCcce
Confidence 8 999999999999999999863
No 253
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.19 E-value=0.0023 Score=56.48 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=53.6
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
|..+...|...|.+.. .|. ....+.+.++++.+. ++|++..|||++.+++.+++.+|||.|.+|+.++.
T Consensus 141 A~aae~~g~~ivyLe~-SG~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 141 ALAAEYLGMPIVYLEY-SGA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHHHHHcCCeEEEeCC-CCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 5667778888887762 222 134566677766542 68999999999999999999999999999999875
No 254
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.17 E-value=0.0038 Score=54.40 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=60.4
Q ss_pred cccHHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCC
Q 021614 151 SLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 229 (310)
Q Consensus 151 ~~~~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (310)
+...+.|++++++. ++-|.+..+.+.++++.+.++|+++++ |.+. ..+ +.+..+. .++|.+- |+
T Consensus 40 p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv-SP~~---------~~~-vi~~a~~--~~i~~iP--G~ 104 (201)
T PRK06015 40 PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV-SPGT---------TQE-LLAAAND--SDVPLLP--GA 104 (201)
T ss_pred ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE-CCCC---------CHH-HHHHHHH--cCCCEeC--CC
Confidence 33467788888776 455777778999999999999999995 3321 112 2222222 2677766 99
Q ss_pred CCHHHHHHHHHcCCCEEEE
Q 021614 230 RRGTDVFKALALGASGIFI 248 (310)
Q Consensus 230 ~~~~dv~k~l~~GAd~V~i 248 (310)
.|+.++..++.+||+.|=+
T Consensus 105 ~TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 105 ATPSEVMALREEGYTVLKF 123 (201)
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 9999999999999998743
No 255
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.16 E-value=0.0032 Score=54.42 Aligned_cols=36 Identities=39% Similarity=0.787 Sum_probs=31.9
Q ss_pred CCceE--EEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 219 GRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 219 ~~ipv--ia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+++|+ ++.|||.++.|+.-.+.+|+|+|.+|+.++.
T Consensus 206 GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 206 GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred CCCceEEecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 46775 6899999999999999999999999997765
No 256
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.15 E-value=0.0055 Score=54.66 Aligned_cols=75 Identities=21% Similarity=0.167 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.|+...+.|+|.+++..-.+.. +.......+.++.+.. ..|+...|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 356788889999999986533221 2345567777776532 25999999999999999999999999999997654
No 257
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=97.15 E-value=0.0029 Score=54.93 Aligned_cols=83 Identities=29% Similarity=0.294 Sum_probs=58.0
Q ss_pred cccHHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCC
Q 021614 151 SLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 229 (310)
Q Consensus 151 ~~~~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (310)
+...+.|+.++++. ++-|.+..+.+.++++.+.++||++++ +.+ -+.+.+.. .+.. ++|++- |+
T Consensus 44 ~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fiv-SP~---------~~~~v~~~-~~~~--~i~~iP--G~ 108 (196)
T PF01081_consen 44 PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIV-SPG---------FDPEVIEY-AREY--GIPYIP--GV 108 (196)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEE-ESS-----------HHHHHH-HHHH--TSEEEE--EE
T ss_pred ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEE-CCC---------CCHHHHHH-HHHc--CCcccC--Cc
Confidence 34567898888876 566777788999999999999999995 332 11222222 2222 688887 88
Q ss_pred CCHHHHHHHHHcCCCEEEE
Q 021614 230 RRGTDVFKALALGASGIFI 248 (310)
Q Consensus 230 ~~~~dv~k~l~~GAd~V~i 248 (310)
.|+.++.+++.+||+.|=+
T Consensus 109 ~TptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 109 MTPTEIMQALEAGADIVKL 127 (196)
T ss_dssp SSHHHHHHHHHTT-SEEEE
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 9999999999999998865
No 258
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.14 E-value=0.005 Score=56.65 Aligned_cols=87 Identities=25% Similarity=0.271 Sum_probs=67.0
Q ss_pred HHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCH
Q 021614 154 WKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 232 (310)
Q Consensus 154 ~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (310)
.+.++++|+.. ..+|.| .+-+.+++..+.++|+|.|.+.|- +.+.+.++.+..+.++.+-++|||. .
T Consensus 196 ~~av~~~r~~~~~~kIeV-Ev~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI~-~ 263 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEV-EVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNVT-L 263 (296)
T ss_pred HHHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCCC-H
Confidence 35577777664 356443 557899999999999999988773 2344555555555588999999998 8
Q ss_pred HHHHHHHHcCCCEEEEcHHH
Q 021614 233 TDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 233 ~dv~k~l~~GAd~V~ig~~~ 252 (310)
+.+.++...|+|.+.+|...
T Consensus 264 ~ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 264 ETLREFAETGVDFISVGALT 283 (296)
T ss_pred HHHHHHHhcCCCEEEeCccc
Confidence 99999999999999999854
No 259
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.12 E-value=0.0034 Score=56.30 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.|+...+.|+|.+++..-.+. ..+.+...+.+.++.+.+ .|+...|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~ 107 (241)
T PRK14114 33 AELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_pred HHHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhC
Confidence 35688888999999987643221 113345677788887654 6999999999999999999999999999996653
No 260
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.09 E-value=0.007 Score=55.59 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=65.8
Q ss_pred HHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHH---hcCCceEEEecCC
Q 021614 154 WKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGV 229 (310)
Q Consensus 154 ~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~---~~~~ipvia~GGI 229 (310)
.+.++++|+.. ..++.| .+-+.+++..+.++|+|.|.+.|- . .+.+.++.+. ...++.+.++|||
T Consensus 187 ~~ai~~~r~~~~~~kIeV-Ev~tl~ea~eal~~gaDiI~LDnm-------~---~e~vk~av~~~~~~~~~v~ieaSGGI 255 (289)
T PRK07896 187 VAALRAVRAAAPDLPCEV-EVDSLEQLDEVLAEGAELVLLDNF-------P---VWQTQEAVQRRDARAPTVLLESSGGL 255 (289)
T ss_pred HHHHHHHHHhCCCCCEEE-EcCCHHHHHHHHHcCCCEEEeCCC-------C---HHHHHHHHHHHhccCCCEEEEEECCC
Confidence 35577777764 356544 557899999999999999998873 1 2333333322 2457899999999
Q ss_pred CCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 230 RRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 230 ~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
. .+.+.++..+|+|.+.+|+...
T Consensus 256 ~-~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 256 T-LDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred C-HHHHHHHHhcCCCEEEeChhhc
Confidence 8 8999999999999999998764
No 261
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.08 E-value=0.0048 Score=54.73 Aligned_cols=67 Identities=21% Similarity=0.291 Sum_probs=45.4
Q ss_pred HcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 184 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 184 ~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
=.|...|.+-...|.. ++. ...+.++++.+ .++|+|..|||+|.+++.++..+|||.|.+|+.|...
T Consensus 151 ~~g~~~iYLEaGSGa~---~~v-~~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~ 217 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGAY---GPV-PEEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEED 217 (230)
T ss_dssp HTT-SEEEEE--TTSS---S-H-HHHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHH
T ss_pred HhCCCEEEEEeCCCCC---CCc-cHHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEc
Confidence 3588888876522322 222 13444555554 4899999999999999999999999999999998763
No 262
>PRK08999 hypothetical protein; Provisional
Probab=97.06 E-value=0.0025 Score=59.17 Aligned_cols=76 Identities=22% Similarity=0.230 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHcCCcEEEEecCCCCCCC--CCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHH
Q 021614 174 LTAEDARIAVQAGAAGIIVSNHGARQLD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 251 (310)
Q Consensus 174 ~~~~~a~~~~~aGad~I~v~~~gg~~~~--~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~ 251 (310)
-+.+++..+.+.|+|+|.++.-..+..+ ..+..++.+.++++.. ++||++-||| +.+++.+++.+||++|.+-+.
T Consensus 234 h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~ 310 (312)
T PRK08999 234 HDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIRG 310 (312)
T ss_pred CCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEE
Confidence 4678889999999999998764332211 1223456677776654 7999999999 799999999999999998765
Q ss_pred H
Q 021614 252 V 252 (310)
Q Consensus 252 ~ 252 (310)
+
T Consensus 311 ~ 311 (312)
T PRK08999 311 L 311 (312)
T ss_pred e
Confidence 4
No 263
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.01 E-value=0.0095 Score=54.73 Aligned_cols=87 Identities=24% Similarity=0.318 Sum_probs=65.4
Q ss_pred HHHHHHHhhCC-CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHH
Q 021614 155 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 233 (310)
Q Consensus 155 ~~i~~ir~~~~-~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (310)
+.++++|+... .+|.| .+-+.++++.+.++|+|.|.+.|- +.+.+.++.+.++.++.+-++|||. .+
T Consensus 194 ~av~~~r~~~~~~kIeV-Evetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGIt-~~ 261 (294)
T PRK06978 194 AALDAAFALNAGVPVQI-EVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGVN-FD 261 (294)
T ss_pred HHHHHHHHhCCCCcEEE-EcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCCC-HH
Confidence 44667766532 34433 456899999999999999998873 2344555555455578999999998 89
Q ss_pred HHHHHHHcCCCEEEEcHHHH
Q 021614 234 DVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 234 dv~k~l~~GAd~V~ig~~~l 253 (310)
.+.++...|+|.+.+|....
T Consensus 262 ni~~yA~tGVD~IS~galth 281 (294)
T PRK06978 262 TVRAFAETGVDRISIGALTK 281 (294)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 99999899999999998653
No 264
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.99 E-value=0.0044 Score=55.99 Aligned_cols=71 Identities=27% Similarity=0.219 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.+.|+...+.|++.+++---++ +.+.....+.++.+ + .+||-..||||+ +++.+++.+||+.|.+|+..+.
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 4678999999999998764332 22445677777776 4 599999999996 9999999999999999998765
No 265
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=96.95 E-value=0.034 Score=50.07 Aligned_cols=184 Identities=16% Similarity=0.199 Sum_probs=90.2
Q ss_pred HHHHHHHHcCCeeEeCCCC---------C----CC-----------HHHHHccCC-CceeEEEEecCCh-HHHHHHHHHH
Q 021614 32 ATARAASAAGTIMTLSSWS---------T----SS-----------VEEVASTGP-GIRFFQLYVYKDR-NVVAQLVRRA 85 (310)
Q Consensus 32 ~la~~a~~~g~~~~~~~~~---------~----~~-----------~e~i~~~~~-~~~~~ql~~~~d~-~~~~~~i~~~ 85 (310)
-.|+.+++.|+.+.+.-.| | .+ -+|+...-+ .|.++-+. ..|| ..+...++++
T Consensus 26 lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPViaGv~-atDP~~~~~~fl~~l 104 (268)
T PF09370_consen 26 LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVIAGVC-ATDPFRDMDRFLDEL 104 (268)
T ss_dssp HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EEEEE--TT-TT--HHHHHHHH
T ss_pred hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEEEEec-CcCCCCcHHHHHHHH
Confidence 3589999999888763211 1 01 134444333 36677776 5566 6788889999
Q ss_pred HHcCCcEEEEeeCCCCCCcchHHhhhccCCCCccccccccccccccccccc-chhhHHHhhhccCCcccHHHHHHHHhhC
Q 021614 86 ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN-DSGLAAYVAGQIDRSLSWKDVKWLQTIT 164 (310)
Q Consensus 86 ~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~ir~~~ 164 (310)
++.||..+. |+ |+.+. +++ .+++.. ..+.+ .+.-.|+|+.-++.
T Consensus 105 k~~Gf~GV~-Nf--PTvgl-------------------iDG----~fR~~LEe~Gmg--------y~~EVemi~~A~~~- 149 (268)
T PF09370_consen 105 KELGFSGVQ-NF--PTVGL-------------------IDG----QFRQNLEETGMG--------YDREVEMIRKAHEK- 149 (268)
T ss_dssp HHHT-SEEE-E---S-GGG---------------------H----HHHHHHHHTT----------HHHHHHHHHHHHHT-
T ss_pred HHhCCceEE-EC--Cccee-------------------ecc----HHHHHHHhcCCC--------HHHHHHHHHHHHHC-
Confidence 999999874 44 44321 110 011000 01111 11123445555443
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEecC---CCCC-CCCCcc---hHHHHHHHHHH---hcCCc-eEEEecCCCCHH
Q 021614 165 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH---GARQ-LDYVPA---TIMALEEVVKA---TQGRI-PVFLDGGVRRGT 233 (310)
Q Consensus 165 ~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~---gg~~-~~~~~~---~~~~l~~i~~~---~~~~i-pvia~GGI~~~~ 233 (310)
--+.+..++++++|+.+.++|||.|+++-. +|+. .+...+ ..+.+.++.++ +..++ -++-.|-|.+++
T Consensus 150 -gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~ 228 (268)
T PF09370_consen 150 -GLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPE 228 (268)
T ss_dssp -T-EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHH
T ss_pred -CCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHH
Confidence 223444567999999999999999988642 2221 111111 12222333332 33444 455555699999
Q ss_pred HHHHHHHc--CCCEEEEcHHH
Q 021614 234 DVFKALAL--GASGIFIGRPV 252 (310)
Q Consensus 234 dv~k~l~~--GAd~V~ig~~~ 252 (310)
|+...+.. |+++..-||++
T Consensus 229 D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 229 DAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp HHHHHHHH-TTEEEEEESTTT
T ss_pred HHHHHHhcCCCCCEEecccch
Confidence 99999883 68888888765
No 266
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.94 E-value=0.0062 Score=54.75 Aligned_cols=74 Identities=28% Similarity=0.196 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+.++...+.|+..+++.--.+-. +.+.....+.++.+.+ .+|+...|||+|.+|+.+++.+||+.|.+|+..+.
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~ 108 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAALE 108 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 34555678889888876432211 2345677788887765 58999999999999999999999999999997653
No 267
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.94 E-value=0.0043 Score=54.50 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=69.8
Q ss_pred cHHHHHHHHhhCCCCEEEEec--C-CHH-HHHHHHHcCCcEEEEecCCCCC------------------------C---C
Q 021614 153 SWKDVKWLQTITKLPILVKGV--L-TAE-DARIAVQAGAAGIIVSNHGARQ------------------------L---D 201 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~--~-~~~-~a~~~~~aGad~I~v~~~gg~~------------------------~---~ 201 (310)
..+.++++|+..++++-+|.. . +++ .++.+.++|+|++.++...+.. . .
T Consensus 43 G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~ 122 (215)
T PRK13813 43 GLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALE 122 (215)
T ss_pred CHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCC
Confidence 347899998877666668874 2 333 3477889999999997633200 0 0
Q ss_pred ------------------CC----cchHHHHHHHHHHhcCCceEEEecCCCCHH-HHHHHHHcCCCEEEEcHHHHHHhhh
Q 021614 202 ------------------YV----PATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIGRPVVYSLAA 258 (310)
Q Consensus 202 ------------------~~----~~~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~k~l~~GAd~V~ig~~~l~~~~~ 258 (310)
.+ ....+.+.++++.....+. +.+|||+... ++.+++.+|||.+.+||+++.+
T Consensus 123 ~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~~-ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~--- 198 (215)
T PRK13813 123 FIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDELK-IISPGIGAQGGKAADAIKAGADYVIVGRSIYNA--- 198 (215)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCcE-EEeCCcCCCCCCHHHHHHcCCCEEEECcccCCC---
Confidence 00 0111122222222211223 4889999753 5778888999999999986542
Q ss_pred ccHHHHHHHHHHHHHHHH
Q 021614 259 EGEKGVRRVLEMLREEFE 276 (310)
Q Consensus 259 ~G~~~v~~~l~~l~~~l~ 276 (310)
+...+.++.++++++
T Consensus 199 ---~d~~~~~~~l~~~~~ 213 (215)
T PRK13813 199 ---ADPREAAKAINEEIR 213 (215)
T ss_pred ---CCHHHHHHHHHHHHh
Confidence 123445566655543
No 268
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=96.88 E-value=0.0082 Score=53.07 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=50.3
Q ss_pred cCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 185 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 185 aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.|...+-+-..++. +.+...+.+..+++.+. ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 47777766543332 12344666777776543 69999999999999999999999999999998875
No 269
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.87 E-value=0.029 Score=50.94 Aligned_cols=84 Identities=23% Similarity=0.362 Sum_probs=57.2
Q ss_pred HHHHHhhCCCCEEEEec------CCH-----HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 021614 157 VKWLQTITKLPILVKGV------LTA-----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 225 (310)
Q Consensus 157 i~~ir~~~~~pv~vK~~------~~~-----~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia 225 (310)
+.+-++.|++|+++ .. .+. .-++.+.+.|||.|.+-- +. +.+.++.+.. .+||+.
T Consensus 132 v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y----------~~-~~f~~vv~a~--~vPVvi 197 (264)
T PRK08227 132 LVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY----------VE-EGFERITAGC--PVPIVI 197 (264)
T ss_pred HHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC----------CH-HHHHHHHHcC--CCcEEE
Confidence 33344568999987 32 111 126888999999998632 11 4556666544 799999
Q ss_pred ecCCCC-HHHH----HHHHHcCCCEEEEcHHHHH
Q 021614 226 DGGVRR-GTDV----FKALALGASGIFIGRPVVY 254 (310)
Q Consensus 226 ~GGI~~-~~dv----~k~l~~GAd~V~ig~~~l~ 254 (310)
.||=+. .+|+ ..++..||.+|.+||-+..
T Consensus 198 aGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ 231 (264)
T PRK08227 198 AGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQ 231 (264)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCceeeechhhhc
Confidence 999874 3333 3577799999999997654
No 270
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.85 E-value=0.013 Score=50.53 Aligned_cols=82 Identities=27% Similarity=0.298 Sum_probs=61.5
Q ss_pred cHHHHHHHHhhCC-CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCC
Q 021614 153 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 231 (310)
Q Consensus 153 ~~~~i~~ir~~~~-~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (310)
..+.++.+++.++ +.+....+.+.+.++.+.++|+|+|+..+ . .. .+.+.++.. .++++. |+.|
T Consensus 42 ~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~---~-------~~-~~~~~~~~~--~~~~i~--gv~t 106 (190)
T cd00452 42 ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG---L-------DP-EVVKAANRA--GIPLLP--GVAT 106 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC---C-------CH-HHHHHHHHc--CCcEEC--CcCC
Confidence 4567999998874 66777778889999999999999996321 1 11 223333333 577776 8889
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 021614 232 GTDVFKALALGASGIFIG 249 (310)
Q Consensus 232 ~~dv~k~l~~GAd~V~ig 249 (310)
.+++.+++.+|||.+.+-
T Consensus 107 ~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 107 PTEIMQALELGADIVKLF 124 (190)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999999983
No 271
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.83 E-value=0.065 Score=49.86 Aligned_cols=127 Identities=15% Similarity=0.169 Sum_probs=87.5
Q ss_pred eeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHh
Q 021614 65 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 144 (310)
Q Consensus 65 ~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (310)
..+++. ..+++.+.+.++++.+.|++++-++++..
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~~-------------------------------------------- 160 (316)
T cd03319 126 TDYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGGD-------------------------------------------- 160 (316)
T ss_pred eEEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCCC--------------------------------------------
Confidence 344654 46778777888888889999998876521
Q ss_pred hhccCCcccHHHHHHHHhhC-CCCEEEEec--CCHHH----HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHh
Q 021614 145 AGQIDRSLSWKDVKWLQTIT-KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT 217 (310)
Q Consensus 145 ~~~~~~~~~~~~i~~ir~~~-~~pv~vK~~--~~~~~----a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~ 217 (310)
++...+.++.+|+.. +.++.++.. .+.++ ++.+.+.+++.|. +. ..+..++.+.++++..
T Consensus 161 -----~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iE-------eP-~~~~d~~~~~~L~~~~ 227 (316)
T cd03319 161 -----LEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIE-------QP-VPAGDDDGLAYLRDKS 227 (316)
T ss_pred -----hhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEE-------CC-CCCCCHHHHHHHHhcC
Confidence 011235688888766 467777764 34444 4566677887773 10 1123566677776654
Q ss_pred cCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHH
Q 021614 218 QGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRP 251 (310)
Q Consensus 218 ~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~ 251 (310)
++||++++.+.+..++.+++..| +|.|++--.
T Consensus 228 --~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 228 --PLPIMADESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred --CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 79999999999999999999965 888887643
No 272
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.82 E-value=0.055 Score=48.09 Aligned_cols=96 Identities=9% Similarity=-0.012 Sum_probs=57.9
Q ss_pred HHHHHHHhhCCCCEEEEec----CCHHHHHHHHHcCCcEEEEec-CCCCC-CCCCcchHHHHHHHHHHhc---CCceEEE
Q 021614 155 KDVKWLQTITKLPILVKGV----LTAEDARIAVQAGAAGIIVSN-HGARQ-LDYVPATIMALEEVVKATQ---GRIPVFL 225 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~----~~~~~a~~~~~aGad~I~v~~-~gg~~-~~~~~~~~~~l~~i~~~~~---~~ipvia 225 (310)
+.++++|+. +.++-++.. ...+..+...+ -+|.|.+-. ..|.. ...-+..++-+.++++... .++.|-+
T Consensus 107 ~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~-~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 107 LTIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLD-QIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred HHHHHHHHC-CCCceEEEEECCCCCHHHHHHHHh-hcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 456667665 332222332 33566665555 388887754 22211 0112334444555444321 2577999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 226 DGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 226 ~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
+|||+ .+.+.++.++|||.+.+||+++
T Consensus 185 DGGI~-~~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 185 DGSMT-LELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred ECCCC-HHHHHHHHHCCCCEEEEChhhh
Confidence 99998 7888899999999999999854
No 273
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=96.79 E-value=0.016 Score=53.60 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=67.9
Q ss_pred HHHHHHHhhC-----CCCEEEEecCCHHHHHHHHH------cCCcEEEEecC--CCCCCCCCcchHHHHHHHHHHhcCCc
Q 021614 155 KDVKWLQTIT-----KLPILVKGVLTAEDARIAVQ------AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRI 221 (310)
Q Consensus 155 ~~i~~ir~~~-----~~pv~vK~~~~~~~a~~~~~------aGad~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~i 221 (310)
+.++++|+.. ..+|.| .+-+.+++..+.+ +|+|.|.+.|- .... ...+.+.+.++.+.++.+.
T Consensus 188 ~av~~~r~~~~~~~~~~kIeV-Ev~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~---~~~~~e~l~~av~~~~~~~ 263 (308)
T PLN02716 188 NAVQSADKYLEEKGLSMKIEV-ETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLEN---GDVDVSMLKEAVELINGRF 263 (308)
T ss_pred HHHHHHHHhhhhcCCCeeEEE-EECCHHHHHHHHHhcccccCCCCEEEeCCCcccccc---cCCCHHHHHHHHHhhCCCc
Confidence 4466776622 123332 4578999999999 99999999884 1111 1124566666665555678
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 222 PVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 222 pvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
++-++|||. .+.+.++...|+|.+.+|....
T Consensus 264 ~lEaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 264 ETEASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred eEEEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 999999998 8999999999999999998653
No 274
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.78 E-value=0.0098 Score=52.64 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=56.6
Q ss_pred cHHHHHHHHhhC-----CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEec
Q 021614 153 SWKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 227 (310)
Q Consensus 153 ~~~~i~~ir~~~-----~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (310)
..+.|+.+++.+ ++-|.+..+.+.++++.+.++|+++++ +.+. ..+ +.+..+. .++|++-
T Consensus 53 a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV-sP~~---------~~~-v~~~~~~--~~i~~iP-- 117 (222)
T PRK07114 53 AHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV-TPLF---------NPD-IAKVCNR--RKVPYSP-- 117 (222)
T ss_pred HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE-CCCC---------CHH-HHHHHHH--cCCCEeC--
Confidence 456677775432 355667778999999999999999995 3321 112 2222222 2677776
Q ss_pred CCCCHHHHHHHHHcCCCEEEE
Q 021614 228 GVRRGTDVFKALALGASGIFI 248 (310)
Q Consensus 228 GI~~~~dv~k~l~~GAd~V~i 248 (310)
|+.|+.++..++.+||+.|=+
T Consensus 118 G~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 118 GCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCCHHHHHHHHHCCCCEEEE
Confidence 999999999999999988744
No 275
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.77 E-value=0.045 Score=50.57 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHcCCcEEEEe--c-CCCCCCCCCcchHHHHHHHHHHhcCCceEEEecC--CCCHHHHHHHHHcCCCEEEE
Q 021614 174 LTAEDARIAVQAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFI 248 (310)
Q Consensus 174 ~~~~~a~~~~~aGad~I~v~--~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG--I~~~~dv~k~l~~GAd~V~i 248 (310)
.++++|..+.+.|+|++-++ + ||-+......-.++.|.++++.+. ++|+++=|| |. .+++.+++..|++.|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIP-DDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence 36899999889999999988 3 442221111245778888887762 499999998 87 78899999999999999
Q ss_pred cHHHHH
Q 021614 249 GRPVVY 254 (310)
Q Consensus 249 g~~~l~ 254 (310)
++.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998864
No 276
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=96.77 E-value=0.26 Score=48.79 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
.+.++.+.++|+|.|++....++. ...++.+..+++.. .++||++ |+|.|.+++..++.+|||+|.+|
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~----~~vl~~i~~i~~~~-p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHS----EGVLDRVREIKAKY-PDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcc----hhHHHHHHHHHhhC-CCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 577899999999999876532221 12345566666543 3688888 99999999999999999999775
No 277
>PRK14057 epimerase; Provisional
Probab=96.75 E-value=0.078 Score=47.79 Aligned_cols=77 Identities=8% Similarity=0.023 Sum_probs=48.7
Q ss_pred CHHHHHHHHHcCCcEEEEec-CCCCC-CCCCcchHHHHHHHHHHhc---CCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 175 TAEDARIAVQAGAAGIIVSN-HGARQ-LDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 175 ~~~~a~~~~~aGad~I~v~~-~gg~~-~~~~~~~~~~l~~i~~~~~---~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
+.+..+...+. +|.|.+-. ..|.. ...-+..++-+.++++... .++.|-++|||+ .+.+.++.++|||.+.+|
T Consensus 144 p~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGad~~V~G 221 (254)
T PRK14057 144 PLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLIAQGIDRVVSG 221 (254)
T ss_pred CHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEC
Confidence 34555655553 78877643 22211 0112334444554444332 257899999998 678889999999999999
Q ss_pred HHHH
Q 021614 250 RPVV 253 (310)
Q Consensus 250 ~~~l 253 (310)
|+++
T Consensus 222 SalF 225 (254)
T PRK14057 222 SALF 225 (254)
T ss_pred hHhh
Confidence 9864
No 278
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=96.75 E-value=0.022 Score=49.59 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHH
Q 021614 173 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 173 ~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
+.+.++.+++.+.|+..|-+.|+.-.++.-..++.. .+.+.++.++-+++-.||.|++|+.++-..|..+|.+|..+
T Consensus 193 Vn~~eEm~raleiGakvvGvNNRnL~sFeVDlstTs---kL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGEsl 269 (289)
T KOG4201|consen 193 VNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLSTTS---KLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGESL 269 (289)
T ss_pred eccHHHHHHHHHhCcEEEeecCCccceeeechhhHH---HHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecHHH
Confidence 467788999999999998887754322211122222 33334455788999999999999999999999999999999
Q ss_pred HHH
Q 021614 253 VYS 255 (310)
Q Consensus 253 l~~ 255 (310)
+..
T Consensus 270 mk~ 272 (289)
T KOG4201|consen 270 MKQ 272 (289)
T ss_pred Hhc
Confidence 874
No 279
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.72 E-value=0.007 Score=60.39 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCcEEEEecC--CCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHH-cCCCEEEEcHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPV 252 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~-~GAd~V~ig~~~ 252 (310)
.+-++.+.+.|+..|.+..- .|+. ....++.+..+.+.+ ++|||++||+.+.+|+.+++. .|||++..++-|
T Consensus 441 ~~~~~~~~~~Gageil~t~id~DGt~---~G~d~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~f 515 (538)
T PLN02617 441 YELAKAVEELGAGEILLNCIDCDGQG---KGFDIELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIF 515 (538)
T ss_pred HHHHHHHHhcCCCEEEEeeccccccc---cCcCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeee
Confidence 35689999999999987542 1221 124567777777665 899999999999999999998 579999999988
Q ss_pred HHH
Q 021614 253 VYS 255 (310)
Q Consensus 253 l~~ 255 (310)
.+.
T Consensus 516 h~~ 518 (538)
T PLN02617 516 HRK 518 (538)
T ss_pred ccC
Confidence 764
No 280
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.71 E-value=0.0076 Score=53.69 Aligned_cols=107 Identities=19% Similarity=0.302 Sum_probs=68.6
Q ss_pred ceeEEEEecC-------ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCccccccccccccccccccc
Q 021614 64 IRFFQLYVYK-------DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 136 (310)
Q Consensus 64 ~~~~ql~~~~-------d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 136 (310)
.-|+.|..-. |...+.+..+.+.+-|+..+-+..|.|...++..++.-.+.+|.
T Consensus 91 ~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPl------------------- 151 (248)
T cd04728 91 TDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPL------------------- 151 (248)
T ss_pred CCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCC-------------------
Confidence 4587776433 34444444444444499988777777777776666532222221
Q ss_pred chhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEe-cCCHHHHHHHHHcCCcEEEEec
Q 021614 137 DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~~aGad~I~v~~ 194 (310)
++.+... ..-...+.|+.+++..++||++-. +.+++++..+++.|+|++.+..
T Consensus 152 ----g~pIGsg-~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 152 ----GSPIGSG-QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred ----CcCCCCC-CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 0111110 111236889999998899999886 4789999999999999998754
No 281
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.69 E-value=0.01 Score=59.33 Aligned_cols=76 Identities=22% Similarity=0.169 Sum_probs=58.5
Q ss_pred HHHHHHHHcCCcEEEEecCCCC--CCCCCcchHHHHHHHHHHhcCCceEEEecCCCCH-----------HHHHHHHHcCC
Q 021614 177 EDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGA 243 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~--~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-----------~dv~k~l~~GA 243 (310)
+.|+.-.+.|||-|++-.-.+. +.....+.++.+.++.+.+ .+|+-..||||+. +++.+.|.+||
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Ga 348 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGA 348 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcCC
Confidence 5688899999999987654331 1111223467777877765 7999999999998 55899999999
Q ss_pred CEEEEcHHHHH
Q 021614 244 SGIFIGRPVVY 254 (310)
Q Consensus 244 d~V~ig~~~l~ 254 (310)
|-|.+|+..+.
T Consensus 349 dkV~i~s~Av~ 359 (538)
T PLN02617 349 DKISIGSDAVY 359 (538)
T ss_pred CEEEEChHHHh
Confidence 99999997765
No 282
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.67 E-value=0.022 Score=53.39 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
.+.+..+.++|+|.|.++.+.|.. ....+.+.++++... ++||++ |.+.+.+++.+++.+|||++.+|
T Consensus 96 ~~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 356788999999999987643321 123455666665542 588888 99999999999999999999873
No 283
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.65 E-value=0.11 Score=45.80 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=58.0
Q ss_pred HHHHHHHhhCCCCEEE---Eec--------CCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceE
Q 021614 155 KDVKWLQTITKLPILV---KGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 223 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~v---K~~--------~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 223 (310)
+.++.+++..++|++. |.. .+.++++.+.++|+|+|.+.....+ ...+....+.+..+++.. ++++
T Consensus 50 ~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~~i 126 (219)
T cd04729 50 EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NCLL 126 (219)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CCeE
Confidence 4567777767888863 221 2356889999999998877542111 001112233444444432 5777
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 224 FLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 224 ia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
+. ++.+.+++..+..+|+|.+.+.
T Consensus 127 iv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 127 MA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred EE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 76 6899999999999999998653
No 284
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.65 E-value=0.021 Score=50.26 Aligned_cols=82 Identities=22% Similarity=0.287 Sum_probs=60.5
Q ss_pred ccHHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCC
Q 021614 152 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 230 (310)
Q Consensus 152 ~~~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 230 (310)
...+.|+.+++.. ++-|.+..+.+.++++.+.++|+++++.-+. +.+.+....+ ..+|++- |+.
T Consensus 52 ~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~----------~~~vi~~a~~---~~i~~iP--G~~ 116 (212)
T PRK05718 52 AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL----------TPPLLKAAQE---GPIPLIP--GVS 116 (212)
T ss_pred cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHH---cCCCEeC--CCC
Confidence 3457789998876 4667777789999999999999999963221 1123332222 2567765 899
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 021614 231 RGTDVFKALALGASGIFI 248 (310)
Q Consensus 231 ~~~dv~k~l~~GAd~V~i 248 (310)
|+.++.+++.+||+.|-+
T Consensus 117 TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 117 TPSELMLGMELGLRTFKF 134 (212)
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999999876
No 285
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.088 Score=45.13 Aligned_cols=51 Identities=29% Similarity=0.396 Sum_probs=38.5
Q ss_pred CceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHH
Q 021614 220 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFEL 277 (310)
Q Consensus 220 ~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~ 277 (310)
...+=.+||+. ++.+-++.++||+.+..|++.+.+ ..-.++|..++++...
T Consensus 169 ~l~ievDGGv~-~~ti~~~a~AGAN~iVaGsavf~a------~d~~~vi~~lr~~v~~ 219 (224)
T KOG3111|consen 169 NLDIEVDGGVG-PSTIDKAAEAGANMIVAGSAVFGA------ADPSDVISLLRNSVEK 219 (224)
T ss_pred CceEEecCCcC-cchHHHHHHcCCCEEEecceeecC------CCHHHHHHHHHHHHhh
Confidence 45566999998 889999999999999999988753 2223566666666553
No 286
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.099 Score=45.33 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=59.8
Q ss_pred HHHHHHHHhhCCCCEE--EEe---------cCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCce
Q 021614 154 WKDVKWLQTITKLPIL--VKG---------VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 222 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~--vK~---------~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 222 (310)
.+.|+.+++.+++||+ +|- ..+.++...+.++|++.|.+..+.....+ + +++.+ .+..+ .--
T Consensus 55 v~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~-~--~~~~~---i~~~k-~~~ 127 (229)
T COG3010 55 VEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPD-G--DLEEL---IARIK-YPG 127 (229)
T ss_pred hhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCc-c--hHHHH---HHHhh-cCC
Confidence 3678899999999986 332 14568999999999999988775432111 1 33332 22211 122
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEE
Q 021614 223 VFLDGGVRRGTDVFKALALGASGIFI 248 (310)
Q Consensus 223 via~GGI~~~~dv~k~l~~GAd~V~i 248 (310)
.++.-.+.|.+|..-+..+|+|.|+-
T Consensus 128 ~l~MAD~St~ee~l~a~~~G~D~IGT 153 (229)
T COG3010 128 QLAMADCSTFEEGLNAHKLGFDIIGT 153 (229)
T ss_pred cEEEeccCCHHHHHHHHHcCCcEEec
Confidence 44455789999999999999999764
No 287
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.49 E-value=0.013 Score=56.31 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
+.+..+.++|+|.|.+....+. +....+.+.++++..+ +++|+ .|+|.|.+++..++.+|||+|.+|
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p-~~~vi-~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYP-NLDLI-AGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCC-CCcEE-EEecCCHHHHHHHHHcCCCEEEEC
Confidence 6789999999999998764332 2234566677766542 45644 589999999999999999999876
No 288
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=96.49 E-value=0.07 Score=47.07 Aligned_cols=96 Identities=20% Similarity=0.154 Sum_probs=52.6
Q ss_pred CHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 175 TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 175 ~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+.+.++...+.|.+-+++.-..-.+.++.......+..+++....+..+..+|||+ ++.+.+....|||.+.+||+++.
T Consensus 118 ~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~-~~~~~~~~~~~ad~~VvGr~I~~ 196 (216)
T PRK13306 118 TWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLV-VEDLKLFKGIPVKTFIAGRAIRG 196 (216)
T ss_pred CHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCC-HhhHHHHhcCCCCEEEECCcccC
Confidence 44555555555555444332111112222222334445544433356699999999 44444445569999999999654
Q ss_pred HhhhccHHHHHHHHHHHHHHHHH
Q 021614 255 SLAAEGEKGVRRVLEMLREEFEL 277 (310)
Q Consensus 255 ~~~~~G~~~v~~~l~~l~~~l~~ 277 (310)
+ +...+.++.++++++.
T Consensus 197 a------~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 197 A------ADPAAAARAFKDEIAK 213 (216)
T ss_pred C------CCHHHHHHHHHHHHHh
Confidence 2 2234456666666643
No 289
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.49 E-value=0.012 Score=52.39 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=67.8
Q ss_pred ceeEEEEecC-------ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCccccccccccccccccccc
Q 021614 64 IRFFQLYVYK-------DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 136 (310)
Q Consensus 64 ~~~~ql~~~~-------d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 136 (310)
.-|+.|..-. |...+.+..+.+.+-|+..+-+..+.|...++..++.-.+.+|.
T Consensus 91 ~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPl------------------- 151 (250)
T PRK00208 91 TNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPL------------------- 151 (250)
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCC-------------------
Confidence 4587776433 33444444444444499988677777777777666533332221
Q ss_pred chhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021614 137 DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~ 194 (310)
++.+... ..-...+.++.+++..++||++-.. .+++++..+++.|+|++.+..
T Consensus 152 ----g~pIGsg-~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 152 ----GAPIGSG-LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred ----CcCCCCC-CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 0011100 1111357799998888899998864 689999999999999998754
No 290
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.49 E-value=0.024 Score=53.47 Aligned_cols=68 Identities=22% Similarity=0.314 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
.+.+..+.++|+|.|++....|++ ....+.+.++++..+ ++|||+ |.|-|.+-+...+.+|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~s----~~~~~~ik~ik~~~~-~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGHS----EHVIDMIKKIKKKFP-DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTTS----HHHHHHHHHHHHHST-TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCccH----HHHHHHHHHHHHhCC-CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 567889999999999998643332 234556777777653 789986 88999999999999999999887
No 291
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.48 E-value=0.69 Score=42.50 Aligned_cols=110 Identities=12% Similarity=0.189 Sum_probs=72.4
Q ss_pred CCHHHHHHH-HHcCCcEEEEecCCCCCCCCCc-chHHHHHHHHHHhcCCceEEEecCCCCH-HHHHHHHHcCCCEEEEcH
Q 021614 174 LTAEDARIA-VQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIGR 250 (310)
Q Consensus 174 ~~~~~a~~~-~~aGad~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~k~l~~GAd~V~ig~ 250 (310)
.+++++... .+.|+|.+.++...-+..+.+| -.++.+.++.+.+ ++|+..-||=..+ +++.+++.+|+.-|-++|
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 230 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVNIAS 230 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECH
Confidence 357877664 4689999998753222222222 2467888888776 7999999976666 677789999999999999
Q ss_pred HHHHHhhh-------c---cH---HHHHHHHHHHHHHHHHHHHHcCCC
Q 021614 251 PVVYSLAA-------E---GE---KGVRRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 251 ~~l~~~~~-------~---G~---~~v~~~l~~l~~~l~~~m~~~G~~ 285 (310)
.+..+... . .. .-.....+.+++..+..|..+|..
T Consensus 231 el~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 231 DLRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred HHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77543210 0 00 112333455666777777777754
No 292
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=96.47 E-value=0.032 Score=61.02 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=84.3
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHH-----hcCCceEEE-ecCCCCHHHHHHHHHcCCCEEEEcHH
Q 021614 178 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA-----TQGRIPVFL-DGGVRRGTDVFKALALGASGIFIGRP 251 (310)
Q Consensus 178 ~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~-----~~~~ipvia-~GGI~~~~dv~k~l~~GAd~V~ig~~ 251 (310)
+|..+++.|+..|++|.++-.......|.+-++..+.+. ++.++-||+ +|.+++..|++..+..|||+|.-.-+
T Consensus 602 ~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYLA 681 (1485)
T PRK11750 602 EAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYLA 681 (1485)
T ss_pred HHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHHH
Confidence 467788899999999986532111123444444444433 345677888 89999999999999999999964443
Q ss_pred HH--HHhhhcc------HHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccce
Q 021614 252 VV--YSLAAEG------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 295 (310)
Q Consensus 252 ~l--~~~~~~G------~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~~ 295 (310)
+- ..+...| .+.+.+++..+.++|...|..+|...++.-++..+
T Consensus 682 ~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqi 733 (1485)
T PRK11750 682 YETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQL 733 (1485)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCccc
Confidence 31 1111223 35688999999999999999999999988876655
No 293
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=96.41 E-value=0.34 Score=42.46 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=63.9
Q ss_pred cHHHHHHHHhhCCCCEEEEecCCH---HHHHHHHHcCCcEEEEecC-----CCCCCCCCcchHHHHHHHHHHhcCCceEE
Q 021614 153 SWKDVKWLQTITKLPILVKGVLTA---EDARIAVQAGAAGIIVSNH-----GARQLDYVPATIMALEEVVKATQGRIPVF 224 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~~~~---~~a~~~~~aGad~I~v~~~-----gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 224 (310)
..+.++++++..++||+--..... .........-+|.+.+... ||+ +..-+|+.+... +...|++
T Consensus 86 ~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGt---G~~fDW~~l~~~----~~~~~~~ 158 (208)
T COG0135 86 DPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGT---GQTFDWNLLPKL----RLSKPVM 158 (208)
T ss_pred CHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCC---CcEECHHHhccc----cccCCEE
Confidence 357788999888888883233332 2344455567899988774 332 223456666543 2367899
Q ss_pred EecCCCCHHHHHHHHHcCC-CEEEEcHHH
Q 021614 225 LDGGVRRGTDVFKALALGA-SGIFIGRPV 252 (310)
Q Consensus 225 a~GGI~~~~dv~k~l~~GA-d~V~ig~~~ 252 (310)
..||+. ++++.++++++. .+|=+.|.+
T Consensus 159 LAGGL~-p~NV~~ai~~~~p~gvDvSSGV 186 (208)
T COG0135 159 LAGGLN-PDNVAEAIALGPPYGVDVSSGV 186 (208)
T ss_pred EECCCC-HHHHHHHHHhcCCceEEecccc
Confidence 999997 999999999987 888888855
No 294
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.39 E-value=0.037 Score=48.47 Aligned_cols=81 Identities=23% Similarity=0.219 Sum_probs=58.6
Q ss_pred cHHHHHHHHhhCC--CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCC
Q 021614 153 SWKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 230 (310)
Q Consensus 153 ~~~~i~~ir~~~~--~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 230 (310)
..+.|+.+++.++ ..|.+..+.+.++++.+.++|+|+++..+ . .. .+.+.+.. ..++++. |+.
T Consensus 48 ~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~-----~-----~~-~v~~~~~~--~~~~~~~--G~~ 112 (206)
T PRK09140 48 PFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN-----T-----DP-EVIRRAVA--LGMVVMP--GVA 112 (206)
T ss_pred HHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC-----C-----CH-HHHHHHHH--CCCcEEc--ccC
Confidence 4567999988875 44556667899999999999999996421 0 11 12222222 2566666 499
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 021614 231 RGTDVFKALALGASGIFI 248 (310)
Q Consensus 231 ~~~dv~k~l~~GAd~V~i 248 (310)
|++++.++..+|||.+.+
T Consensus 113 t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 113 TPTEAFAALRAGAQALKL 130 (206)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 999999999999999997
No 295
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=96.37 E-value=0.016 Score=50.49 Aligned_cols=83 Identities=29% Similarity=0.287 Sum_probs=59.6
Q ss_pred CcccHHHHHHHHhhCC-CCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecC
Q 021614 150 RSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 228 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~~-~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (310)
.+...+.|+.+++..+ .-|..+.++++++++.+.++|+++|+ +.+- +.+ +.+... ..++|++- |
T Consensus 48 sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiV-sP~~---------~~e-v~~~a~--~~~ip~~P--G 112 (211)
T COG0800 48 TPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIV-SPGL---------NPE-VAKAAN--RYGIPYIP--G 112 (211)
T ss_pred CCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEE-CCCC---------CHH-HHHHHH--hCCCcccC--C
Confidence 3445678999999875 44445567999999999999999995 3321 112 222222 23688877 9
Q ss_pred CCCHHHHHHHHHcCCCEEE
Q 021614 229 VRRGTDVFKALALGASGIF 247 (310)
Q Consensus 229 I~~~~dv~k~l~~GAd~V~ 247 (310)
+.|+.++..++++|++.+=
T Consensus 113 ~~TptEi~~Ale~G~~~lK 131 (211)
T COG0800 113 VATPTEIMAALELGASALK 131 (211)
T ss_pred CCCHHHHHHHHHcChhhee
Confidence 9999999999999998763
No 296
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.34 E-value=0.75 Score=41.43 Aligned_cols=178 Identities=21% Similarity=0.216 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHH
Q 021614 29 GEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 108 (310)
Q Consensus 29 ~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~ 108 (310)
--..+|+.+++.|+.+..+.- . + .+-.+.-|| +-..+-...+.+.+++.|...+- ++-.+.. .+
T Consensus 30 ~~~~~a~~~~~~g~~~~r~g~--~--k----pRts~~sf~---G~G~~gl~~L~~~~~~~Gl~~~T-ev~d~~~----v~ 93 (250)
T PRK13397 30 HIRLAASSAKKLGYNYFRGGA--Y--K----PRTSAASFQ---GLGLQGIRYLHEVCQEFGLLSVS-EIMSERQ----LE 93 (250)
T ss_pred HHHHHHHHHHHcCCCEEEecc--c--C----CCCCCcccC---CCCHHHHHHHHHHHHHcCCCEEE-eeCCHHH----HH
Confidence 335688899999998876541 1 0 011233444 33456666666677888887653 2221111 11
Q ss_pred hhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEec--CCHHH----HHHH
Q 021614 109 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--LTAED----ARIA 182 (310)
Q Consensus 109 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~--~~~~~----a~~~ 182 (310)
.-..+ .+.++-+ +..+ .+.+.++.+.+ .++||++|-. .++++ ++.+
T Consensus 94 ~~~e~---------------vdilqIg-----s~~~-------~n~~LL~~va~-tgkPVilk~G~~~t~~e~~~A~e~i 145 (250)
T PRK13397 94 EAYDY---------------LDVIQVG-----ARNM-------QNFEFLKTLSH-IDKPILFKRGLMATIEEYLGALSYL 145 (250)
T ss_pred HHHhc---------------CCEEEEC-----cccc-------cCHHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 10000 0011110 0011 12456666654 5899999965 56665 4566
Q ss_pred HHcCCcEEEEecCCCCCCCCC---cchHHHHHHHHHHhcCCceEEEec----CCCC--HHHHHHHHHcCCCEEEEcHHH
Q 021614 183 VQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPVFLDG----GVRR--GTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 183 ~~aGad~I~v~~~gg~~~~~~---~~~~~~l~~i~~~~~~~ipvia~G----GI~~--~~dv~k~l~~GAd~V~ig~~~ 252 (310)
.+.|..-|.+--+|-+.+... ...+..+..+++.. .+||+.+= |.|. ..-...++++|||++++-+-+
T Consensus 146 ~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 146 QDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred HHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 778987666643332222111 23445556555544 68999973 4333 123456788999999998744
No 297
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=96.31 E-value=0.19 Score=44.56 Aligned_cols=48 Identities=23% Similarity=0.448 Sum_probs=38.5
Q ss_pred CcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 203 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 203 ~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.++..+.|..+++.. ++|+++..|+. .+.+.+.+.. ||++.+|+.+=.
T Consensus 190 ~~~d~~el~~a~~~~--~~pvlvGSGv~-~eN~~~~l~~-adG~IvgT~lK~ 237 (263)
T COG0434 190 SPPDLEELKLAKEAV--DTPVLVGSGVN-PENIEELLKI-ADGVIVGTSLKK 237 (263)
T ss_pred CCCCHHHHHHHHhcc--CCCEEEecCCC-HHHHHHHHHH-cCceEEEEEEcc
Confidence 456777777777665 59999999997 8888888877 999999997643
No 298
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=96.31 E-value=0.04 Score=49.10 Aligned_cols=43 Identities=21% Similarity=0.112 Sum_probs=30.1
Q ss_pred HHHHHHHHhh-CCCCEEEEe--c-CCHHH-HHHHHHcCCcEEEEecCC
Q 021614 154 WKDVKWLQTI-TKLPILVKG--V-LTAED-ARIAVQAGAAGIIVSNHG 196 (310)
Q Consensus 154 ~~~i~~ir~~-~~~pv~vK~--~-~~~~~-a~~~~~aGad~I~v~~~g 196 (310)
.+.++++++. ..+++=+|. . .+++. ++.+.++|+|+++++..+
T Consensus 43 ~~~i~~l~~~~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~~a 90 (230)
T PRK00230 43 PQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHASG 90 (230)
T ss_pred HHHHHHHHhcCCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEcccC
Confidence 3568888876 456677787 3 35544 566889999999988643
No 299
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.29 E-value=0.065 Score=55.94 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=61.8
Q ss_pred HHHHhhCCCCEEEEec-CCHHHHHHHH----Hc---CCcEEEEecCCCCCCC-CC--cchHHHHHHHHHHhc-CCceEEE
Q 021614 158 KWLQTITKLPILVKGV-LTAEDARIAV----QA---GAAGIIVSNHGARQLD-YV--PATIMALEEVVKATQ-GRIPVFL 225 (310)
Q Consensus 158 ~~ir~~~~~pv~vK~~-~~~~~a~~~~----~a---Gad~I~v~~~gg~~~~-~~--~~~~~~l~~i~~~~~-~~ipvia 225 (310)
+..|+..+.-.+++.. -+.+++..+. .. |+|+|.++.-..+... .. +..++.+.++.+.+. ..+||++
T Consensus 92 ~~~r~~~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~A 171 (755)
T PRK09517 92 TQARRLLPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVA 171 (755)
T ss_pred HHHHHhcCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEE
Confidence 3444433222344443 4566665432 22 5999998764332211 11 224667777766552 1399999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 226 DGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 226 ~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
-||| +.+++.+++++||++|.+-+.++.
T Consensus 172 iGGI-~~~~~~~~~~~Ga~giAvisai~~ 199 (755)
T PRK09517 172 IGGV-GLRNAAELAATGIDGLCVVSAIMA 199 (755)
T ss_pred ECCC-CHHHHHHHHHcCCCEEEEehHhhC
Confidence 9999 599999999999999999999874
No 300
>PLN02591 tryptophan synthase
Probab=96.26 E-value=0.096 Score=47.26 Aligned_cols=41 Identities=27% Similarity=0.252 Sum_probs=35.6
Q ss_pred HHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021614 154 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~ 194 (310)
.+.++++|+.+++||.++.. .++++++.+.+.|+|++++..
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 46699999989999999854 669999999999999998864
No 301
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.24 E-value=0.04 Score=49.05 Aligned_cols=74 Identities=31% Similarity=0.454 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCcEEEEec-CCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
.+.|+.-.+.|+..+++-- .|.. .+++.....+.++.+.. ++||=..||||+-+++...+.+|++.|.+|+.-+
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA~--~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av 108 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGAK--AGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAV 108 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccccc--cCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEeccee
Confidence 4668888899999998743 1111 13455677888888876 7999999999999999999999999999999543
No 302
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=96.20 E-value=0.079 Score=46.17 Aligned_cols=124 Identities=19% Similarity=0.310 Sum_probs=73.1
Q ss_pred EecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccC
Q 021614 70 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 149 (310)
Q Consensus 70 ~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (310)
|...+.+.+.+-++.++++|++.+++.+-.+ |
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~------------------------------------------------d 97 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTE------------------------------------------------D 97 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BET------------------------------------------------T
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECC------------------------------------------------C
Confidence 4445667778888888999999988632211 1
Q ss_pred CcccHHHHHHHHhhC-CCCEEEEec----CCHHH-HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceE
Q 021614 150 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 223 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~-~~pv~vK~~----~~~~~-a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 223 (310)
-....+.++++.+.. +.|+.+=-. .+++. .+.+.+.|++.|--|+.... .....+.|.++.+...+++.|
T Consensus 98 g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~----a~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 98 GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPT----ALEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSS----TTTCHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCC----HHHHHHHHHHHHHHcCCCcEE
Confidence 112234555555544 677776543 23443 57788999999976553221 123355666665555678999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEE
Q 021614 224 FLDGGVRRGTDVFKALA-LGASGI 246 (310)
Q Consensus 224 ia~GGI~~~~dv~k~l~-~GAd~V 246 (310)
++.|||+ .+++.+.++ .|+..+
T Consensus 174 m~GgGv~-~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 174 MPGGGVR-AENVPELVEETGVREI 196 (201)
T ss_dssp EEESS---TTTHHHHHHHHT-SEE
T ss_pred EecCCCC-HHHHHHHHHhhCCeEE
Confidence 9999998 677777776 787765
No 303
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=96.18 E-value=0.12 Score=46.93 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=36.1
Q ss_pred cHHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021614 153 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~ 194 (310)
..+.++++|+.++.|+.+... .++++++.+.++|||++++..
T Consensus 190 ~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 190 LKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 356799999989999999865 569999999999999998854
No 304
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.17 E-value=0.12 Score=48.59 Aligned_cols=151 Identities=17% Similarity=0.114 Sum_probs=85.7
Q ss_pred CcceeeccccccccCCCHHHHHHHHHHHHcCCeeE---eCCC----C--CCC----HHH----HHccCCCceeEEEEecC
Q 021614 11 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT---LSSW----S--TSS----VEE----VASTGPGIRFFQLYVYK 73 (310)
Q Consensus 11 ~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~---~~~~----~--~~~----~e~----i~~~~~~~~~~ql~~~~ 73 (310)
+.|++++ +.+. .++.-..+++.++++|+.+. +|.. . ... +.+ +++...-|.++.+-+
T Consensus 99 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIAS-LNGV---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEE-eCCC---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 5687766 4332 23344568888888885543 2110 0 001 112 222223477877753
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCccc
Q 021614 74 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 153 (310)
Q Consensus 74 d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (310)
+.+.+.++++.++++|+++|.++=..+... -|+++.- + ... .+ +++.......
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~---id~~~~~--~----------------~~~--~g----lSG~~~~~~a 225 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNRFYQPD---IDLETLE--V----------------VPN--LL----LSSPAEIRLP 225 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcCcCCCC---ccccccc--e----------------ecC--CC----cCCccchhHH
Confidence 334567778888899999998743222210 0000000 0 000 00 1111122345
Q ss_pred HHHHHHHHhhCCCCEE-EEecCCHHHHHHHHHcCCcEEEEec
Q 021614 154 WKDVKWLQTITKLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~-vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
++.++++++..++||+ ++++.+.+++...+.+|||+|.+..
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~t 267 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTS 267 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEeh
Confidence 7788999888899987 5567899999988899999998863
No 305
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=96.17 E-value=0.067 Score=48.54 Aligned_cols=87 Identities=24% Similarity=0.276 Sum_probs=64.7
Q ss_pred HHHHHHHhhCCC-CEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHH--hcCCceEEEecCCCC
Q 021614 155 KDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGGVRR 231 (310)
Q Consensus 155 ~~i~~ir~~~~~-pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~--~~~~ipvia~GGI~~ 231 (310)
+.+++.|+..+. +-+==.+-+.+++..+.++|+|.|-+.|- +.+.+.++.+. ..+++-+=+||||.
T Consensus 176 ~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGgIt- 244 (280)
T COG0157 176 EAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGGIT- 244 (280)
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCCCC-
Confidence 458888887532 21222457899999999999999999873 12344444444 44578899999997
Q ss_pred HHHHHHHHHcCCCEEEEcHHH
Q 021614 232 GTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 232 ~~dv~k~l~~GAd~V~ig~~~ 252 (310)
.+.+..+...|.|.+.+|.+-
T Consensus 245 ~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 245 LENIREYAETGVDVISVGALT 265 (280)
T ss_pred HHHHHHHhhcCCCEEEeCccc
Confidence 899999989999999999754
No 306
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.14 E-value=0.024 Score=55.59 Aligned_cols=68 Identities=22% Similarity=0.342 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
.+.+..+.++|+|.|.+....|++ ...++.+.++++.. .++||++ |+|.|.+++..++.+|||++.+|
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGHS----IYVIDSIKEIKKTY-PDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcH----hHHHHHHHHHHHhC-CCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 467889999999999998743322 23456677776654 3689988 99999999999999999999765
No 307
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.09 E-value=0.95 Score=43.09 Aligned_cols=96 Identities=25% Similarity=0.311 Sum_probs=60.5
Q ss_pred HHHHHHHHhhCCCCEEEEec--CCHHHH----HHHHHcCCcEEEEecCCCCCCC---CCcchHHHHHHHHHHhcCCceEE
Q 021614 154 WKDVKWLQTITKLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVF 224 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~--~~~~~a----~~~~~aGad~I~v~~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipvi 224 (310)
++.++.+.+ .+.||++|.. .+.++. ..+.+.|.+-|.+--+|-+.+. .....+..+..+++.. .+||+
T Consensus 215 ~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~PV~ 291 (360)
T PRK12595 215 FELLKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HLPVM 291 (360)
T ss_pred HHHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CCCEE
Confidence 466766654 5899999976 477663 4556678866666543422221 1113566677776654 68999
Q ss_pred EecC----CCCHH--HHHHHHHcCCCEEEEcHHH
Q 021614 225 LDGG----VRRGT--DVFKALALGASGIFIGRPV 252 (310)
Q Consensus 225 a~GG----I~~~~--dv~k~l~~GAd~V~ig~~~ 252 (310)
.+.+ -+... -...|+++|||++++-+-+
T Consensus 292 ~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 292 VDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred EeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 9533 22222 3345788999999999876
No 308
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.00 E-value=0.067 Score=47.65 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=35.1
Q ss_pred ccHHHHHHHHhhC-CCCEEEEe-cCCHHHHHHHHHcCCcEEEEe
Q 021614 152 LSWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 152 ~~~~~i~~ir~~~-~~pv~vK~-~~~~~~a~~~~~aGad~I~v~ 193 (310)
..|+.|+++++.. ++||+.=+ +.+.+++....+.|||+|.+.
T Consensus 177 a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 177 ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 4589999999998 49987543 578999999999999999874
No 309
>PRK06852 aldolase; Validated
Probab=95.99 E-value=0.11 Score=48.23 Aligned_cols=89 Identities=22% Similarity=0.200 Sum_probs=57.1
Q ss_pred HhhCCCCEEEEec---------CCHH----HHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEec
Q 021614 161 QTITKLPILVKGV---------LTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 227 (310)
Q Consensus 161 r~~~~~pv~vK~~---------~~~~----~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (310)
++.|++|+++-.. ..++ -++.+.+.|||.|.+--.+. . +....+.+.++.+.. +.+||+..|
T Consensus 163 a~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~-~---~~g~~e~f~~vv~~~-g~vpVviaG 237 (304)
T PRK06852 163 AHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKK-E---GANPAELFKEAVLAA-GRTKVVCAG 237 (304)
T ss_pred HHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCc-C---CCCCHHHHHHHHHhC-CCCcEEEeC
Confidence 3457999886321 1122 26889999999999753211 0 001234555555543 368999999
Q ss_pred CCCC-HHHHH----HHHH-cCCCEEEEcHHHHH
Q 021614 228 GVRR-GTDVF----KALA-LGASGIFIGRPVVY 254 (310)
Q Consensus 228 GI~~-~~dv~----k~l~-~GAd~V~ig~~~l~ 254 (310)
|=+. ..|++ .++. .||.++.+||-++.
T Consensus 238 G~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ 270 (304)
T PRK06852 238 GSSTDPEEFLKQLYEQIHISGASGNATGRNIHQ 270 (304)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCceeeechhhhc
Confidence 9774 33344 4667 89999999997665
No 310
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.99 E-value=0.068 Score=49.92 Aligned_cols=68 Identities=18% Similarity=0.114 Sum_probs=50.6
Q ss_pred HHHHHHHHHcC--CcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 176 AEDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 176 ~~~a~~~~~aG--ad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
.+.++.+.++| +|+|++....|++ ...++.+..+++..+ . +.+..|.|-+++++..++.+|||+|-+|
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGhs----~~~i~~ik~ir~~~p-~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGYS----EHFVEFVKLVREAFP-E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcH----HHHHHHHHHHHhhCC-C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 45678888885 9999998754432 234566677766542 3 4555688999999999999999999777
No 311
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.98 E-value=0.032 Score=49.03 Aligned_cols=71 Identities=24% Similarity=0.259 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
.+.|+...++||++|.+....+.. ....+.+..+++.+ ++||+.-|+|++..++..++++|||+|.++...
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~~----~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~ 104 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKYF----QGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAA 104 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCcccc----CCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeecc
Confidence 467899999999999886432211 12345556666554 799999999999999999999999999988754
No 312
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.96 E-value=0.86 Score=41.96 Aligned_cols=152 Identities=16% Similarity=0.105 Sum_probs=83.0
Q ss_pred ceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHH
Q 021614 64 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 143 (310)
Q Consensus 64 ~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (310)
|..+-.-.+.++..+.+.++++.++|+.+|.|. |. + .|++-+- .. ..+....
T Consensus 80 Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iE-Dq-~-------------~pk~cg~--~~-----------~~~~~~l 131 (285)
T TIGR02320 80 PIILDGDTGGNFEHFRRLVRKLERRGVSAVCIE-DK-L-------------GLKKNSL--FG-----------NDVAQPQ 131 (285)
T ss_pred CEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEe-cc-C-------------CCccccc--cC-----------CCCcccc
Confidence 445544444688888899999999999888762 11 0 0110000 00 0000001
Q ss_pred hhhccCCcccHHHHHHHHhh---CCCCEEEEe-----cCCHH----HHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHH
Q 021614 144 VAGQIDRSLSWKDVKWLQTI---TKLPILVKG-----VLTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALE 211 (310)
Q Consensus 144 ~~~~~~~~~~~~~i~~ir~~---~~~pv~vK~-----~~~~~----~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~ 211 (310)
+ ..+...+.|+..++. .+++|+... ....+ .++...++|||.|.+.. .+.+.+.+.
T Consensus 132 ~----s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~--------~~~~~~ei~ 199 (285)
T TIGR02320 132 A----SVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS--------RKKDPDEIL 199 (285)
T ss_pred c----CHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC--------CCCCHHHHH
Confidence 1 111122445555543 246677662 12233 36888999999998752 123445555
Q ss_pred HHHHHhcC---CceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 212 EVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 212 ~i~~~~~~---~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
++.+.+.. ++|++...+-.....+.+.-++|++.|..|..++.+
T Consensus 200 ~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 200 EFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred HHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 55555532 568776543111223555566899999999887764
No 313
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.95 E-value=0.13 Score=45.29 Aligned_cols=91 Identities=14% Similarity=0.038 Sum_probs=60.2
Q ss_pred HHHHHHHHhhCCCCEEEEec-----------CCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCce
Q 021614 154 WKDVKWLQTITKLPILVKGV-----------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 222 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~-----------~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 222 (310)
.+.++++|+.+++|++.... .+.++++.+.++|+|+|.+........ .+....+.+..+++. ..++
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p-~~~~~~~~i~~~~~~--~~i~ 121 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRP-DGETLAELVKRIKEY--PGQL 121 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCC-CCCCHHHHHHHHHhC--CCCe
Confidence 46788999888999873321 235689999999999887764211100 001122333443332 3677
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 223 VFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 223 via~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
++. ++.+.+++.++..+|+|.+.++
T Consensus 122 vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 122 LMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred EEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 775 6789999999999999999774
No 314
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.94 E-value=0.067 Score=50.42 Aligned_cols=74 Identities=23% Similarity=0.221 Sum_probs=43.5
Q ss_pred HHHHHH--cCCcEEEEecCCCC----CCCC------CcchHHHHHHHHHHhcCCceEE-EecCCCCHHHHHH----HHHc
Q 021614 179 ARIAVQ--AGAAGIIVSNHGAR----QLDY------VPATIMALEEVVKATQGRIPVF-LDGGVRRGTDVFK----ALAL 241 (310)
Q Consensus 179 a~~~~~--aGad~I~v~~~gg~----~~~~------~~~~~~~l~~i~~~~~~~ipvi-a~GGI~~~~dv~k----~l~~ 241 (310)
++.+.+ .|+|.+.+--.+.. ..+. .......+.++.+.. .+|++ .+||+ +.+++.+ ++..
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~a 266 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEA 266 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 466664 99999998532110 0000 011123344444443 57754 58887 5666654 5568
Q ss_pred CC--CEEEEcHHHHHH
Q 021614 242 GA--SGIFIGRPVVYS 255 (310)
Q Consensus 242 GA--d~V~ig~~~l~~ 255 (310)
|| .+|.+||.....
T Consensus 267 Ga~f~Gvl~GRniwq~ 282 (340)
T PRK12858 267 GADFSGVLCGRATWQD 282 (340)
T ss_pred CCCccchhhhHHHHhh
Confidence 99 999999987653
No 315
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=95.89 E-value=0.22 Score=44.71 Aligned_cols=126 Identities=15% Similarity=0.234 Sum_probs=77.5
Q ss_pred EecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccC
Q 021614 70 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 149 (310)
Q Consensus 70 ~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (310)
|...+.+.+.+-++.+++.|++.+++.+-.|.
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~d------------------------------------------------ 98 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDVD------------------------------------------------ 98 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECCC------------------------------------------------
Confidence 33345567778888889999999887432211
Q ss_pred CcccHHHHHHHHhhC-CCCEEEEec----CCHHH-HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceE
Q 021614 150 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 223 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~-~~pv~vK~~----~~~~~-a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 223 (310)
.....+.++++.+.. +.|+.+=-. .++.. .+.+.+.|++.|.-||...+ .......|.++.+.....+ |
T Consensus 99 g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~~----a~~g~~~L~~lv~~a~~~~-I 173 (248)
T PRK11572 99 GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQD----AEQGLSLIMELIAASDGPI-I 173 (248)
T ss_pred CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCCC----HHHHHHHHHHHHHhcCCCE-E
Confidence 112234556665554 567665433 23333 57799999999965542211 1223444555554443334 9
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 224 FLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 224 ia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
++.|||+ .+++.+....|+..+=..
T Consensus 174 m~GgGV~-~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 174 MAGAGVR-LSNLHKFLDAGVREVHSS 198 (248)
T ss_pred EeCCCCC-HHHHHHHHHcCCCEEeeC
Confidence 9999998 788888778898877543
No 316
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.82 E-value=0.16 Score=46.62 Aligned_cols=155 Identities=23% Similarity=0.256 Sum_probs=87.2
Q ss_pred CcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCC------C-------CHHH----HHccCCCceeEEEEecC
Q 021614 11 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST------S-------SVEE----VASTGPGIRFFQLYVYK 73 (310)
Q Consensus 11 ~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~------~-------~~e~----i~~~~~~~~~~ql~~~~ 73 (310)
..|++++ +.+. .++.-...++.+.++|+.+.-=.++. . .+.+ +++...-+.++.+-...
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4576554 4442 23333567888888887643211110 0 1112 22222236677777666
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCccc
Q 021614 74 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 153 (310)
Q Consensus 74 d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (310)
+.+.+.++++.++++|+++|.++-..... ..+... ..|. .... ..+ +++.......
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~~---~~~~~~--~~~~--------------~~~~-~~g----~sg~~~~~~~ 229 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISGR---VVDLKT--VGPG--------------PKRG-TGG----LSGAPIRPLA 229 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcc---ceeccc--Cccc--------------cCCC-CCc----cCcHHHHHHH
Confidence 77788899999999999999875332111 000000 0000 0000 000 0100011234
Q ss_pred HHHHHHHHhhC--CCCEEEEe-cCCHHHHHHHHHcCCcEEEEe
Q 021614 154 WKDVKWLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 154 ~~~i~~ir~~~--~~pv~vK~-~~~~~~a~~~~~aGad~I~v~ 193 (310)
++.++++++.. ++||+.=+ +.+.+++..+..+|||+|.+.
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence 78899999988 89988654 567999999999999999774
No 317
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=95.82 E-value=0.028 Score=50.27 Aligned_cols=106 Identities=21% Similarity=0.337 Sum_probs=69.7
Q ss_pred ceeEEEEe-------cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCccccccccccccccccccc
Q 021614 64 IRFFQLYV-------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 136 (310)
Q Consensus 64 ~~~~ql~~-------~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 136 (310)
..|+.|.. ..|+..+.+..+.+.+.||..+--+.+-|+..+|..|.--...+|- . ..+
T Consensus 105 ~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPl----------g-----sPI 169 (267)
T CHL00162 105 NNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPL----------G-----SPI 169 (267)
T ss_pred CCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeec----------c-----Ccc
Confidence 34776653 3467778888888888999887766666666666555422222221 0 000
Q ss_pred chhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEE-ecCCHHHHHHHHHcCCcEEEEe
Q 021614 137 DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK-~~~~~~~a~~~~~aGad~I~v~ 193 (310)
+++ .--.+...|+.+++..++||++- ++.+++++..+++.|+|++-+.
T Consensus 170 GSg---------~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~n 218 (267)
T CHL00162 170 GSG---------QGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLN 218 (267)
T ss_pred cCC---------CCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeec
Confidence 011 00113467899999999999987 4578999999999999999763
No 318
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.79 E-value=0.17 Score=47.51 Aligned_cols=76 Identities=25% Similarity=0.268 Sum_probs=48.3
Q ss_pred HHHHHHcCCcEEEEecCCC----------CCC----C--CCcchHHHHHHHHHHh-cCCceEEEecCCCCH-HH----HH
Q 021614 179 ARIAVQAGAAGIIVSNHGA----------RQL----D--YVPATIMALEEVVKAT-QGRIPVFLDGGVRRG-TD----VF 236 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg----------~~~----~--~~~~~~~~l~~i~~~~-~~~ipvia~GGI~~~-~d----v~ 236 (310)
++.+.+.|||.|.+--.+. ... + ......+.+..+.+.+ .+++||+.+||=... +| +.
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~ 302 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVR 302 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHH
Confidence 6788999999999854321 000 0 0012233344444443 247999999998843 33 34
Q ss_pred HH---HHcCCCEEEEcHHHHH
Q 021614 237 KA---LALGASGIFIGRPVVY 254 (310)
Q Consensus 237 k~---l~~GAd~V~ig~~~l~ 254 (310)
.+ +..||.++.+||-++.
T Consensus 303 ~a~~~i~aGa~Gv~iGRNIfQ 323 (348)
T PRK09250 303 TAVINKRAGGMGLIIGRKAFQ 323 (348)
T ss_pred HHHHhhhcCCcchhhchhhhc
Confidence 57 7789999999997765
No 319
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=95.71 E-value=0.066 Score=49.84 Aligned_cols=88 Identities=20% Similarity=0.374 Sum_probs=59.5
Q ss_pred CCceeEEEEecCC--hHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchh
Q 021614 62 PGIRFFQLYVYKD--RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSG 139 (310)
Q Consensus 62 ~~~~~~ql~~~~d--~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 139 (310)
+.+..+.+..+.+ .+.+.++++.+.++|++.|.||--++...
T Consensus 122 ~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~------------------------------------ 165 (309)
T PF01207_consen 122 PIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQR------------------------------------ 165 (309)
T ss_dssp SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCC------------------------------------
T ss_pred ccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhc------------------------------------
Confidence 3466777776655 68889999999999999998865432210
Q ss_pred hHHHhhhccCCcccHHHHHHHHhhCCCCEEEEe-cCCHHHHHHHHHc-CCcEEEEe
Q 021614 140 LAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIVS 193 (310)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~~a-Gad~I~v~ 193 (310)
......|+.++++++..++||+.=+ +.+.++++...+. |+|+|-++
T Consensus 166 --------~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 166 --------YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp --------CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred --------CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 1123458999999999999999765 4789999887766 99999774
No 320
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.71 E-value=0.18 Score=47.23 Aligned_cols=89 Identities=19% Similarity=0.412 Sum_probs=66.9
Q ss_pred CCceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhH
Q 021614 62 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 141 (310)
Q Consensus 62 ~~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (310)
+.+....+....|.+.+.+.++.++++|++.+-|| |++. +. .+
T Consensus 141 ~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVH------GRtr-~~----------------------------kg-- 183 (358)
T KOG2335|consen 141 NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVH------GRTR-EQ----------------------------KG-- 183 (358)
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEe------cccH-Hh----------------------------cC--
Confidence 34677788888899999999999999999988764 2221 10 00
Q ss_pred HHhhhccCCcccHHHHHHHHhhCC-CCEEEEe-cCCHHHHHHHHH-cCCcEEEE
Q 021614 142 AYVAGQIDRSLSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIV 192 (310)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~ir~~~~-~pv~vK~-~~~~~~a~~~~~-aGad~I~v 192 (310)
...+...|+.|+.|++..+ +||++=+ +.+.+++..+.+ .|+|+|-+
T Consensus 184 -----~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 184 -----LKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred -----CCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 0234556999999999886 9999876 467899988887 99999964
No 321
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.64 E-value=0.056 Score=53.69 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
+.++.+.++|+|.|.+....+.+ ....+.+..+++..+.+++ +..|-|-+.+++..++.+|||++-+|
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~~----~~~~~~i~~ir~~~~~~~~-V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGYS----EWQKRTLDWIREKYGDSVK-VGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHhCCCeEeecCccccc----HHHHHHHHHHHHhCCCCce-EEeccccCHHHHHHHHHcCCCEEEEC
Confidence 55788999999999987532321 1235566777665532344 45588999999999999999999774
No 322
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.61 E-value=0.09 Score=48.57 Aligned_cols=93 Identities=15% Similarity=0.227 Sum_probs=59.5
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCc-chHHHHHHHHHHhcCCceEEEecCCCCHHHHHH----HHHcCCCEEEEcHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 253 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----~l~~GAd~V~ig~~~l 253 (310)
++.+.+.|+++|.+.++.|....-.. ...+.+..+.+...+++||++.=|-.+-.|.++ +-++|||++++..|++
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 46677899999998886653221111 122333444555667899997666666666653 4457999999999987
Q ss_pred HHhhhccHHHHHHHHHHHHHH
Q 021614 254 YSLAAEGEKGVRRVLEMLREE 274 (310)
Q Consensus 254 ~~~~~~G~~~v~~~l~~l~~~ 274 (310)
+.. .++++.+++..+.+.
T Consensus 107 ~~~---~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 107 NKP---NQEALYDHFAEVADA 124 (294)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 345555555555443
No 323
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=95.59 E-value=0.63 Score=42.10 Aligned_cols=118 Identities=25% Similarity=0.297 Sum_probs=80.1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcc
Q 021614 73 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 152 (310)
Q Consensus 73 ~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (310)
.+++.+.+.+++..+.|++.+-+.++. +++.
T Consensus 84 ~~~~~~~~~~~~~~~~G~~~~KiKvg~-------------------------------------------------~~~~ 114 (265)
T cd03315 84 GEPAEVAEEARRALEAGFRTFKLKVGR-------------------------------------------------DPAR 114 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC-------------------------------------------------CHHH
Confidence 466777777777788899888775541 0111
Q ss_pred cHHHHHHHHhhC--CCCEEEEec--CCHHH----HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEE
Q 021614 153 SWKDVKWLQTIT--KLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 224 (310)
Q Consensus 153 ~~~~i~~ir~~~--~~pv~vK~~--~~~~~----a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 224 (310)
..+.++.+|+.. +.++.+... .+.++ ++.+.+.|++.|.-- . .+..++.+.++++.. ++||+
T Consensus 115 d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP------~--~~~d~~~~~~l~~~~--~ipia 184 (265)
T cd03315 115 DVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQP------L--PADDLEGRAALARAT--DTPIM 184 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECC------C--CcccHHHHHHHHhhC--CCCEE
Confidence 235688888876 456665543 35554 456677788887421 0 112356666776654 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 021614 225 LDGGVRRGTDVFKALALG-ASGIFIG 249 (310)
Q Consensus 225 a~GGI~~~~dv~k~l~~G-Ad~V~ig 249 (310)
+++.+.+..++.+++..+ +|.|++-
T Consensus 185 ~dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 185 ADESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred ECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 999999999999999876 8888874
No 324
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.59 E-value=0.074 Score=47.09 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHH--cCCCEEEEcHHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPVV 253 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~--~GAd~V~ig~~~l 253 (310)
.+.|+...+.|+|.+++..-.+. .+.+.....+.++.+. +|+...|||++.+|+.+++. .||+.|.+|+..+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 45678888999999987643221 1334567777777653 58999999999999998865 3699999999764
No 325
>PLN02417 dihydrodipicolinate synthase
Probab=95.58 E-value=0.11 Score=47.57 Aligned_cols=92 Identities=18% Similarity=0.292 Sum_probs=59.1
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcch-HHHHHHHHHHhcCCceEEEecCCCCHHHHHH----HHHcCCCEEEEcHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 253 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----~l~~GAd~V~ig~~~l 253 (310)
++.+.+.|+++|.+.++.|....-.... .+.+..+.+...+++||++.=|=.+..|+++ +-++|||+|++-.|++
T Consensus 28 i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 28 VNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred HHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 4667789999999988766321111111 2233444555566899988666556666665 3458999999999986
Q ss_pred HHhhhccHHHHHHHHHHHHH
Q 021614 254 YSLAAEGEKGVRRVLEMLRE 273 (310)
Q Consensus 254 ~~~~~~G~~~v~~~l~~l~~ 273 (310)
+. ..++++.+++..+.+
T Consensus 108 ~~---~~~~~i~~~f~~va~ 124 (280)
T PLN02417 108 GK---TSQEGLIKHFETVLD 124 (280)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 53 245666666665544
No 326
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=95.57 E-value=0.034 Score=49.19 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=32.1
Q ss_pred HHHHHHHHhhCCCCEEEEe-cCCHHHHHHHHHcCCcEEEEe
Q 021614 154 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~~aGad~I~v~ 193 (310)
...++.++++.++||+|-- +-++.++..+++.|+|+|.+.
T Consensus 164 ~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 164 PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp HHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 3668889998999999874 468999999999999999764
No 327
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.56 E-value=0.068 Score=52.76 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 248 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~i 248 (310)
+.+..+.++|+|.|.+....|. .....+.+.++++.. .+++||+ |.|.|.+.+..++.+|||+|-+
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~----~~~~~~~i~~ik~~~-p~~~v~a-gnv~t~~~a~~l~~aGad~v~v 295 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGH----QEKMLEALRAVRALD-PGVPIVA-GNVVTAEGTRDLVEAGADIVKV 295 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCc----cHHHHHHHHHHHHHC-CCCeEEe-eccCCHHHHHHHHHcCCCEEEE
Confidence 5578899999999999865443 234567778887765 3577776 8999999999999999999773
No 328
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.53 E-value=0.13 Score=48.18 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=49.8
Q ss_pred HHHHHHHHH--cCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 176 AEDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 176 ~~~a~~~~~--aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
.+.+..+.+ +|+|+|++....|++ ....+.+..+++.. ++++||+ |.|-|++.+...+.+|||+|=+|
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGhs----~~~i~~ik~ik~~~-P~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGYS----EHFVQFVAKAREAW-PDKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcH----HHHHHHHHHHHHhC-CCCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 345677777 599999998644432 23466677777765 3577665 99999999999999999997544
No 329
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.53 E-value=0.073 Score=52.48 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
.+.++.+.++|+|.|.+....|++ ....+.+..+++.. .++|||+ |.+.|.+.+..++.+|||+|-+|
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQ----VKMISAIKAVRALD-LGVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCc----HHHHHHHHHHHHHC-CCCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 356889999999999998754443 23455667776654 3799999 77999999999999999998755
No 330
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.52 E-value=0.19 Score=46.94 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=56.5
Q ss_pred CCEEEEecCCHH---HHHHHHHcC--CcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Q 021614 166 LPILVKGVLTAE---DARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 240 (310)
Q Consensus 166 ~pv~vK~~~~~~---~a~~~~~aG--ad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~ 240 (310)
+++.+-...+.+ .+..+.++| +|+|++....|++ ...++.+..+++.. ..|.+..|.|-+.+++..++.
T Consensus 83 L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s----~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~ 156 (321)
T TIGR01306 83 LFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHS----NSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELEN 156 (321)
T ss_pred cEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCch----HHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHH
Confidence 344443334444 467788999 7999987643332 23456677777655 568888899999999999999
Q ss_pred cCCCEEEEc
Q 021614 241 LGASGIFIG 249 (310)
Q Consensus 241 ~GAd~V~ig 249 (310)
+|||++-+|
T Consensus 157 aGad~I~V~ 165 (321)
T TIGR01306 157 AGADATKVG 165 (321)
T ss_pred cCcCEEEEC
Confidence 999999877
No 331
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.51 E-value=0.1 Score=47.98 Aligned_cols=91 Identities=21% Similarity=0.346 Sum_probs=58.4
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcch-HHHHHHHHHHhcCCceEEEecCCCCHHHHHH----HHHcCCCEEEEcHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 253 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----~l~~GAd~V~ig~~~l 253 (310)
++.+.+.|+|+|.+.++.|....-.... .+.+..+.+...+++|||+.-|- +-.+..+ +-++|||++++-.|++
T Consensus 27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 27 VEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 4667789999999887665432111222 22334445555668999997775 6666664 3347999999999987
Q ss_pred HHhhhccHHHHHHHHHHHHH
Q 021614 254 YSLAAEGEKGVRRVLEMLRE 273 (310)
Q Consensus 254 ~~~~~~G~~~v~~~l~~l~~ 273 (310)
+. ..++++.+++..+.+
T Consensus 106 ~~---~~~~~i~~~f~~v~~ 122 (289)
T cd00951 106 TE---APQEGLYAHVEAVCK 122 (289)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 53 244555555555544
No 332
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.48 E-value=0.29 Score=44.16 Aligned_cols=84 Identities=27% Similarity=0.405 Sum_probs=55.7
Q ss_pred HHhhCCCCEEEEec-----------CCHH----HHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEE
Q 021614 160 LQTITKLPILVKGV-----------LTAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 224 (310)
Q Consensus 160 ir~~~~~pv~vK~~-----------~~~~----~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 224 (310)
-...++.|+++=.. .+++ -++.+.+.|||.|.+.-.+ ..+...++.+.+ .+||+
T Consensus 138 ~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~vpVv 206 (265)
T COG1830 138 DAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GVPVV 206 (265)
T ss_pred HHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CCCEE
Confidence 33457889887321 1122 2568899999999864221 224455665555 49999
Q ss_pred EecCCCC--HHH----HHHHHHcCCCEEEEcHHHHH
Q 021614 225 LDGGVRR--GTD----VFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 225 a~GGI~~--~~d----v~k~l~~GAd~V~ig~~~l~ 254 (310)
.+||=+. ..+ +..++..||.++.+||-++.
T Consensus 207 iaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ 242 (265)
T COG1830 207 IAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQ 242 (265)
T ss_pred EeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhc
Confidence 9999887 222 23567789999999997765
No 333
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.46 E-value=0.11 Score=48.19 Aligned_cols=92 Identities=21% Similarity=0.330 Sum_probs=58.5
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcch-HHHHHHHHHHhcCCceEEEecCCCCHHHHHH----HHHcCCCEEEEcHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 253 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----~l~~GAd~V~ig~~~l 253 (310)
++.+.+.|+|+|.+.++.|....-.... .+.+..+.+.+.+++|||+.-|- +-.+.++ +-.+|||+|++-.|++
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 4677789999999887665332111112 23344455556678999987664 6666654 3347999999999986
Q ss_pred HHhhhccHHHHHHHHHHHHHH
Q 021614 254 YSLAAEGEKGVRRVLEMLREE 274 (310)
Q Consensus 254 ~~~~~~G~~~v~~~l~~l~~~ 274 (310)
+. ..++++.+++..+.+.
T Consensus 113 ~~---~~~~~i~~~f~~va~~ 130 (303)
T PRK03620 113 TE---APQEGLAAHVEAVCKS 130 (303)
T ss_pred CC---CCHHHHHHHHHHHHHh
Confidence 53 2355566666555443
No 334
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.45 E-value=0.23 Score=46.75 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=59.6
Q ss_pred HHHHHHHHhhCCCCEEEEec-CCH----HHHHHHHHcCCcEEEEecC---CCCCCCCC-c--chHHHHHHHHHHhcCCce
Q 021614 154 WKDVKWLQTITKLPILVKGV-LTA----EDARIAVQAGAAGIIVSNH---GARQLDYV-P--ATIMALEEVVKATQGRIP 222 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~-~~~----~~a~~~~~aGad~I~v~~~---gg~~~~~~-~--~~~~~l~~i~~~~~~~ip 222 (310)
.+.++.+++..+.|+++++. .+. +.++.+.++|+|+|.+.-. +.....+. . ..++.+..+++.+ ++|
T Consensus 90 ~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iP 167 (334)
T PRK07565 90 LELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIP 167 (334)
T ss_pred HHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCc
Confidence 45566777777899999985 343 3467788899999998431 11111111 1 1233445554443 689
Q ss_pred EEEe--cCCCCHHHHHHHHH-cCCCEEEEcH
Q 021614 223 VFLD--GGVRRGTDVFKALA-LGASGIFIGR 250 (310)
Q Consensus 223 via~--GGI~~~~dv~k~l~-~GAd~V~ig~ 250 (310)
|++- +++.+..++.+++. .|+|+|.+..
T Consensus 168 V~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 168 VAVKLSPYFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred EEEEeCCCchhHHHHHHHHHHcCCCeEEEEC
Confidence 8876 45556678877665 8999997744
No 335
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=95.44 E-value=0.19 Score=46.14 Aligned_cols=119 Identities=22% Similarity=0.275 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHh-----cCCce-EEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIP-VFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ip-via~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
++|..+.+.|+..|+++-++........|.+-++..+.+.+ +.++- |+=+|-+|+..|+...+-.|||+|.=--
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYl 225 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYL 225 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHC
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHH
Confidence 35788889999999998765221111223344444444433 33455 5557789999999999999999985222
Q ss_pred HH--HHHhhhcc-------HHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcccce
Q 021614 251 PV--VYSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 295 (310)
Q Consensus 251 ~~--l~~~~~~G-------~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~~~~ 295 (310)
++ +..+...| ++.+.+++..+.++|...|..+|...++.-++..+
T Consensus 226 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqi 279 (287)
T PF04898_consen 226 AYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQI 279 (287)
T ss_dssp CHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhccccee
Confidence 22 11222222 35688999999999999999999999888776544
No 336
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.41 E-value=0.12 Score=48.19 Aligned_cols=92 Identities=24% Similarity=0.355 Sum_probs=58.2
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcch-HHHHHHHHHHhcCCceEEEecCCCCHHHHHHH----HHcCCCEEEEcHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVV 253 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~----l~~GAd~V~ig~~~l 253 (310)
++.+.+.|+++|.+.++.|....-.... .+.+..+.+.+.+++|||+.=|=.+..++++. -.+|||++++-.|++
T Consensus 35 v~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 35 VERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred HHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 4667789999999987765321111111 22334445556678999886665566666653 347999999999987
Q ss_pred HHhhhccHHHHHHHHHHHHH
Q 021614 254 YSLAAEGEKGVRRVLEMLRE 273 (310)
Q Consensus 254 ~~~~~~G~~~v~~~l~~l~~ 273 (310)
+.. .++++.++++.+.+
T Consensus 115 ~~~---~~~~l~~yf~~va~ 131 (309)
T cd00952 115 LPL---DVDTAVQFYRDVAE 131 (309)
T ss_pred CCC---CHHHHHHHHHHHHH
Confidence 642 34555555555544
No 337
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=95.38 E-value=0.33 Score=40.85 Aligned_cols=108 Identities=25% Similarity=0.264 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCC-CceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHH
Q 021614 30 EYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 108 (310)
Q Consensus 30 ~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~-~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~ 108 (310)
+.+..=.++.......+||-+. -+..+.. +...+|-.+--|.....+.++.+++.+.|++++ -|.
T Consensus 65 e~~i~fi~~~~~pdGIISTk~~----~i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEv---LPG------- 130 (181)
T COG1954 65 EVAIEFIKEVIKPDGIISTKSN----VIKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEV---LPG------- 130 (181)
T ss_pred hHHHHHHHHhccCCeeEEccHH----HHHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEE---cCc-------
Confidence 5555556666666666666442 1121111 333445444567788888888888899998886 111
Q ss_pred hhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCC
Q 021614 109 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGA 187 (310)
Q Consensus 109 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGa 187 (310)
++| +.++++.++++.||+.++- .+.|++..+.++||
T Consensus 131 -----------------------------------v~P--------kvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA 167 (181)
T COG1954 131 -----------------------------------VMP--------KVIKEITEKTHIPIIAGGLIETEEEVREALKAGA 167 (181)
T ss_pred -----------------------------------ccH--------HHHHHHHHhcCCCEEeccccccHHHHHHHHHhCc
Confidence 122 5799999999999999875 68999999999999
Q ss_pred cEEEEec
Q 021614 188 AGIIVSN 194 (310)
Q Consensus 188 d~I~v~~ 194 (310)
-++.-++
T Consensus 168 ~avSTs~ 174 (181)
T COG1954 168 VAVSTSN 174 (181)
T ss_pred EEEeecc
Confidence 9887554
No 338
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=95.37 E-value=0.28 Score=46.30 Aligned_cols=123 Identities=19% Similarity=0.206 Sum_probs=81.6
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCccc
Q 021614 74 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 153 (310)
Q Consensus 74 d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (310)
+++.+.+.++++.+.|++.+-+.++..... . ......
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~----------------------------------~---------~~~~~d 175 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSG----------------------------------G---------EDLRED 175 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcc----------------------------------h---------HHHHHH
Confidence 467777788888889999998876532100 0 001223
Q ss_pred HHHHHHHHhhC--CCCEEEEec--CCHHHH----HHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 021614 154 WKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 225 (310)
Q Consensus 154 ~~~i~~ir~~~--~~pv~vK~~--~~~~~a----~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia 225 (310)
.+.++.+|+.+ +.++.+... .+.+++ +.+.+.++++|. +- ..+..+..+.++++.. .+||++
T Consensus 176 ~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iE-------qP-~~~~~~~~~~~l~~~~--~ipi~~ 245 (357)
T cd03316 176 LARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFE-------EP-VPPDDLEGLARLRQAT--SVPIAA 245 (357)
T ss_pred HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEc-------CC-CCccCHHHHHHHHHhC--CCCEEe
Confidence 56788999876 567777653 456665 344455666553 10 1122456666776654 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEc
Q 021614 226 DGGVRRGTDVFKALALG-ASGIFIG 249 (310)
Q Consensus 226 ~GGI~~~~dv~k~l~~G-Ad~V~ig 249 (310)
+..+++..|+.+++..| +|.+.+-
T Consensus 246 dE~~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 246 GENLYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred ccccccHHHHHHHHHhCCCCEEecC
Confidence 99999999999999876 7888764
No 339
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.37 E-value=2.2 Score=39.17 Aligned_cols=183 Identities=18% Similarity=0.180 Sum_probs=103.4
Q ss_pred cceeeccccccccCCCHHHHHHHHHHHHcCCeeEe--CCC---CCCCHHHHH-------ccCCC--ceeEEEEecCChHH
Q 021614 12 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SSW---STSSVEEVA-------STGPG--IRFFQLYVYKDRNV 77 (310)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~--~~~---~~~~~e~i~-------~~~~~--~~~~ql~~~~d~~~ 77 (310)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+...+ ++. ...+.+|.. +..++ +.++++. ..+.+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG-SNSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC-CchHHH
Confidence 46778888544434555556677778888875443 332 345555422 22222 4555665 346788
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHH
Q 021614 78 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 157 (310)
Q Consensus 78 ~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 157 (310)
..++++.+++.|++++.+. .|... + . +.+-..+..
T Consensus 85 ~i~~a~~a~~~G~d~v~~~--pP~~~------------~---------------------~----------~~~~i~~~~ 119 (292)
T PRK03170 85 AIELTKFAEKAGADGALVV--TPYYN------------K---------------------P----------TQEGLYQHF 119 (292)
T ss_pred HHHHHHHHHHcCCCEEEEC--CCcCC------------C---------------------C----------CHHHHHHHH
Confidence 8888999999999998873 22210 0 0 001112456
Q ss_pred HHHHhhCCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCC
Q 021614 158 KWLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 229 (310)
Q Consensus 158 ~~ir~~~~~pv~vK~~-------~~~~~a~~~~~aG-ad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (310)
+.+.+.+++||++=.. .+++...++.+.+ +-+++-+. .+...+.++.+..+.++.++. |
T Consensus 120 ~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK~s~----------~d~~~~~~~~~~~~~~~~v~~-G-- 186 (292)
T PRK03170 120 KAIAEATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIKEAT----------GDLERVSELIELVPDDFAVYS-G-- 186 (292)
T ss_pred HHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEECC----------CCHHHHHHHHHhCCCCeEEEE-C--
Confidence 6677777888886432 4677777775432 22232111 123334444433333444443 2
Q ss_pred CCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 230 RRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 230 ~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
....+...+.+|+++++.|...++
T Consensus 187 -~d~~~~~~l~~G~~G~is~~~n~~ 210 (292)
T PRK03170 187 -DDALALPFLALGGVGVISVAANVA 210 (292)
T ss_pred -ChHhHHHHHHcCCCEEEEhHHhhh
Confidence 234466778899999998876543
No 340
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.34 E-value=0.15 Score=46.51 Aligned_cols=92 Identities=21% Similarity=0.386 Sum_probs=58.6
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcc-hHHHHHHHHHHhcCCceEEEecCCCCHHHHHH----HHHcCCCEEEEcHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 253 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----~l~~GAd~V~ig~~~l 253 (310)
++.+.+.|+++|.+.++.|....-... ..+.+..+.+...+++||++.-|=.+..+..+ +-.+|||++++..|++
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 466778899999988876643211111 12334445555556899888766666665554 3347999999999987
Q ss_pred HHhhhccHHHHHHHHHHHHH
Q 021614 254 YSLAAEGEKGVRRVLEMLRE 273 (310)
Q Consensus 254 ~~~~~~G~~~v~~~l~~l~~ 273 (310)
+. ...+++.+++..+.+
T Consensus 104 ~~---~~~~~~~~~~~~ia~ 120 (281)
T cd00408 104 NK---PSQEGIVAHFKAVAD 120 (281)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 64 234555555555444
No 341
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=95.29 E-value=0.63 Score=44.68 Aligned_cols=160 Identities=15% Similarity=0.081 Sum_probs=79.7
Q ss_pred eeecCcccCcceeeccccccccC-----CCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCC--h
Q 021614 3 TTVLGFKISMPIMIAPTAMQKMA-----HPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKD--R 75 (310)
Q Consensus 3 t~l~g~~~~~Pi~iapm~~~~~~-----~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d--~ 75 (310)
.+|.+.++++.|+.|||+-.... ..+....+-+.-++.|..+++++......+- .....+...|+..+.+ .
T Consensus 5 ~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~--~~~~~~~~~~~~~~~~~~i 82 (382)
T cd02931 5 IKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEI--EQFPMPSLPCPTYNPTAFI 82 (382)
T ss_pred eeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcc--cccCCCCccccccCCHHHh
Confidence 46788999999999999531111 1233455555555567888876532211100 0000011113221222 3
Q ss_pred HHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHH
Q 021614 76 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 155 (310)
Q Consensus 76 ~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (310)
+.++++.+.+.+.|+.++ +-+... .|+...... ...+.-+.+ ...... ......-...+.+
T Consensus 83 ~~~k~l~davh~~G~~i~-~QL~H~-~Gr~~~~~~--~~~~~~~~p------------s~~~~~---~~~~~~p~~mt~~ 143 (382)
T cd02931 83 RTAKEMTERVHAYGTKIF-LQLTAG-FGRVCIPGF--LGEDKPVAP------------SPIPNR---WLPEITCRELTTE 143 (382)
T ss_pred HHHHHHHHHHHHcCCEEE-EEccCc-CCCccCccc--cCCCCccCC------------CCCCCC---cCCCCCCCcCCHH
Confidence 667788888889998764 444332 011110000 000000000 000000 0000011335677
Q ss_pred HHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021614 156 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 156 ~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
.|+++.+.+ .+-|+++.++|.|+|.++.
T Consensus 144 eI~~ii~~f-----------~~AA~ra~~AGfDgVEih~ 171 (382)
T cd02931 144 EVETFVGKF-----------GESAVIAKEAGFDGVEIHA 171 (382)
T ss_pred HHHHHHHHH-----------HHHHHHHHHcCCCEEEEec
Confidence 888887753 3568999999999999986
No 342
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=95.22 E-value=0.084 Score=49.47 Aligned_cols=94 Identities=20% Similarity=0.300 Sum_probs=72.5
Q ss_pred cCCcc---cHHHHHHHHhh-CCCCEEEEe-cCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCce
Q 021614 148 IDRSL---SWKDVKWLQTI-TKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 222 (310)
Q Consensus 148 ~~~~~---~~~~i~~ir~~-~~~pv~vK~-~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 222 (310)
.|+.+ +.+.++.+|+. +++||..|- +.++.+...+...|||+|.+...- + ....+..+.+.++.+ .+.
T Consensus 160 Td~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaai---L--~~~~L~~l~~~A~~L--Gme 232 (338)
T PLN02460 160 TDEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAV---L--PDLDIKYMLKICKSL--GMA 232 (338)
T ss_pred cCcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHh---C--CHHHHHHHHHHHHHc--CCe
Confidence 45554 58999999998 999999997 478999999999999999765421 1 122455555655555 566
Q ss_pred EEEecCCCCHHHHHHHHHc-CCCEEEEcH
Q 021614 223 VFLDGGVRRGTDVFKALAL-GASGIFIGR 250 (310)
Q Consensus 223 via~GGI~~~~dv~k~l~~-GAd~V~ig~ 250 (310)
++.. |++.+++.+++.+ ||+.++|=.
T Consensus 233 ~LVE--VH~~~ElerAl~~~ga~iIGINN 259 (338)
T PLN02460 233 ALIE--VHDEREMDRVLGIEGVELIGINN 259 (338)
T ss_pred EEEE--eCCHHHHHHHHhcCCCCEEEEeC
Confidence 6663 8999999999998 999999875
No 343
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.21 E-value=0.14 Score=46.09 Aligned_cols=71 Identities=23% Similarity=0.245 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
+.|+...++||++|.|-.-+. +. ...++.+..+++.+ ++||+.-..|-++.++.++..+|||+|.+=-.++
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~--~F--~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQS--YF--GGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRIL 135 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCC--cC--CCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhC
Confidence 568889999999998765321 11 12466777777765 7999999999999999999999999997655443
No 344
>PLN02535 glycolate oxidase
Probab=95.18 E-value=0.15 Score=48.41 Aligned_cols=91 Identities=19% Similarity=0.321 Sum_probs=62.0
Q ss_pred cHHHHHHHHhhCCCCEEEEecC------CHHHHHHHHHcCCcEEEEecCC---C-CC--------------CC-------
Q 021614 153 SWKDVKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNHG---A-RQ--------------LD------- 201 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~~------~~~~a~~~~~aGad~I~v~~~g---g-~~--------------~~------- 201 (310)
+.|.| .+..+-|.++.... +.+..+++.++|+.+|++..-. | |. ..
T Consensus 114 slEev---a~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~ 190 (364)
T PLN02535 114 TVEEV---ASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEV 190 (364)
T ss_pred CHHHH---HhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCC
Confidence 44555 44456688888763 2455789999999999986411 1 00 00
Q ss_pred ----------------CCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 202 ----------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 202 ----------------~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
....+|+.+..+++.. ++||++ .||.+++|+.++..+|+|+|.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 191 VSDKGSGLEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred CccccccHHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 0123466666666544 689887 67899999999999999999885
No 345
>PRK08185 hypothetical protein; Provisional
Probab=95.17 E-value=0.83 Score=41.97 Aligned_cols=109 Identities=22% Similarity=0.304 Sum_probs=72.2
Q ss_pred CHHHHHHHHHc-CCcEEEEec---CCCCCCCC-CcchHHHHHHHHHHhcCCceEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 021614 175 TAEDARIAVQA-GAAGIIVSN---HGARQLDY-VPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFI 248 (310)
Q Consensus 175 ~~~~a~~~~~a-Gad~I~v~~---~gg~~~~~-~~~~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~k~l~~GAd~V~i 248 (310)
+++++....+. |+|++.++. ||-+.... ..-.++.|.++++.+ ++|+++=||...+ +++.+++.+|..-|-+
T Consensus 150 ~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi 227 (283)
T PRK08185 150 DPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKINI 227 (283)
T ss_pred CHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEEe
Confidence 68888888876 999999864 22111100 112478888888776 7999999998655 5566799999999999
Q ss_pred cHHHHHHhhh-------cc------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021614 249 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 249 g~~~l~~~~~-------~G------~~~v~~~l~~l~~~l~~~m~~~G~~ 285 (310)
++.+..+... .. ..-.....+.+.+..+..|..+|..
T Consensus 228 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 228 SSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred ChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977543210 01 0112333455666677777777754
No 346
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=95.16 E-value=1.4 Score=37.09 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=46.5
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
...+.+.++|+|.+-. + -....+.++.+.. .+|||+.|=|++-+|+..++.+||-+|....
T Consensus 114 ~~~i~~~~pD~iEvLP-------G--v~Pkvi~~i~~~t--~~piIAGGLi~t~Eev~~Al~aGA~avSTs~ 174 (181)
T COG1954 114 IKQIEKSEPDFIEVLP-------G--VMPKVIKEITEKT--HIPIIAGGLIETEEEVREALKAGAVAVSTSN 174 (181)
T ss_pred HHHHHHcCCCEEEEcC-------c--ccHHHHHHHHHhc--CCCEEeccccccHHHHHHHHHhCcEEEeecc
Confidence 4566778999998743 1 1234556665554 7999999999999999999999998887553
No 347
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.15 E-value=0.18 Score=46.53 Aligned_cols=92 Identities=11% Similarity=0.148 Sum_probs=56.3
Q ss_pred HHHHHHcC-CcEEEEecCCCCCCCCCcchH-HHHHHHHHHhcCCceEEEecCCCCHHHHHH----HHHcCCCEEEEcHHH
Q 021614 179 ARIAVQAG-AAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 252 (310)
Q Consensus 179 a~~~~~aG-ad~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----~l~~GAd~V~ig~~~ 252 (310)
++.+.+.| +|+|.+.|+.|....-..... +.+..+++...+++||++.=|=.+-.|.++ +-.+|||++++..|+
T Consensus 27 i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 46778899 999999887664321111122 223444555556899987644344555543 344799999999998
Q ss_pred HHHhhhccHHHHHHHHHHHHH
Q 021614 253 VYSLAAEGEKGVRRVLEMLRE 273 (310)
Q Consensus 253 l~~~~~~G~~~v~~~l~~l~~ 273 (310)
++.. .++++.+++..+.+
T Consensus 107 y~~~---~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 107 YYKF---SFPEIKHYYDTIIA 124 (290)
T ss_pred CCCC---CHHHHHHHHHHHHh
Confidence 7642 34555555555443
No 348
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=95.11 E-value=0.62 Score=43.77 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=83.6
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
++|.+...++++.++++|++++=+..-. ...+-.... +.. .+.. .. ........+.+. ...
T Consensus 12 ~Gdl~~A~~lI~~A~~aGadaVKfQt~~------~~~~~~~~~-~~~----~~~~---~~--~~~~~~~~~~~~---~~~ 72 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQTFK------AEDLVSKNA-PKA----EYQK---IN--TGAEESQLEMLK---KLE 72 (329)
T ss_pred cCcHHHHHHHHHHHHHhCCCEEEeeeCC------HHHhhCccc-ccc----cccc---cC--CcCCCcHHHHHH---HhC
Confidence 4688999999999999999987653321 111100000 000 0000 00 000000111221 123
Q ss_pred ccHHH---HHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecC
Q 021614 152 LSWKD---VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 228 (310)
Q Consensus 152 ~~~~~---i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (310)
+.++. +.+.++..+++++. ..++.+.+..+.+.|++.+.|... -...+..|..+++ ...|||.+-|
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KIaS~-------~~~n~pLL~~~A~---~gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLS-TPFDLESADFLEDLGVPRFKIPSG-------EITNAPLLKKIAR---FGKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEE-EeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHh---cCCcEEEECC
Confidence 34444 55555566777763 446788889999999999998642 1234566666554 2689999999
Q ss_pred CCCHHHHHHHHH----cCCC
Q 021614 229 VRRGTDVFKALA----LGAS 244 (310)
Q Consensus 229 I~~~~dv~k~l~----~GAd 244 (310)
..+.+++..++. .|.+
T Consensus 142 matl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 142 MATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 999999987765 4654
No 349
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=95.03 E-value=0.069 Score=48.03 Aligned_cols=95 Identities=23% Similarity=0.314 Sum_probs=70.7
Q ss_pred cCCcc---cHHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceE
Q 021614 148 IDRSL---SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 223 (310)
Q Consensus 148 ~~~~~---~~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 223 (310)
.|+.+ +.+.++.+|+.+++||..|-. .++.+...+...|||+|-+...- + .......+.+....+ .+.+
T Consensus 87 Td~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~---L--~~~~l~el~~~A~~L--Gm~~ 159 (254)
T COG0134 87 TDPKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAA---L--DDEQLEELVDRAHEL--GMEV 159 (254)
T ss_pred cCccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHh---c--CHHHHHHHHHHHHHc--CCee
Confidence 44543 589999999999999999975 78999999999999999764321 1 111233444444444 5666
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEcHH
Q 021614 224 FLDGGVRRGTDVFKALALGASGIFIGRP 251 (310)
Q Consensus 224 ia~GGI~~~~dv~k~l~~GAd~V~ig~~ 251 (310)
+.. +++.+++.+++.+||..+++=.-
T Consensus 160 LVE--Vh~~eEl~rAl~~ga~iIGINnR 185 (254)
T COG0134 160 LVE--VHNEEELERALKLGAKIIGINNR 185 (254)
T ss_pred EEE--ECCHHHHHHHHhCCCCEEEEeCC
Confidence 663 89999999999999999998763
No 350
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.98 E-value=0.19 Score=46.45 Aligned_cols=92 Identities=20% Similarity=0.321 Sum_probs=57.5
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcchH-HHHHHHHHHhcCCceEEEecCCCCHHHHHH----HHHcCCCEEEEcHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 253 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----~l~~GAd~V~ig~~~l 253 (310)
++.+.+.|+|+|.+.++.|....-..... +.+..+.+...+++||++.=|- +-.+.++ +-.+|||++++-.|++
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 46677899999999887664321112222 2334445556678998887663 4555543 3347999999999987
Q ss_pred HHhhhccHHHHHHHHHHHHHH
Q 021614 254 YSLAAEGEKGVRRVLEMLREE 274 (310)
Q Consensus 254 ~~~~~~G~~~v~~~l~~l~~~ 274 (310)
+.. .++++.+++..+.+.
T Consensus 111 ~~~---s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 111 ING---EQEGLYAHVEAVCES 128 (296)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 642 345555555555443
No 351
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=94.97 E-value=0.016 Score=49.29 Aligned_cols=139 Identities=18% Similarity=0.250 Sum_probs=77.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
..|...+.++++++++.|- .++||+|. +.++.. ...+-+++.....++
T Consensus 27 ~g~I~~l~~~v~~~~~~gK-~vfVHiDl------------------------i~Gl~~-------D~~~i~~L~~~~~~d 74 (175)
T PF04309_consen 27 TGDIGNLKDIVKRLKAAGK-KVFVHIDL------------------------IEGLSR-------DEAGIEYLKEYGKPD 74 (175)
T ss_dssp SEECCCHHHHHHHHHHTT--EEEEECCG------------------------EETB-S-------SHHHHHHHHHTT--S
T ss_pred cCcHHHHHHHHHHHHHcCC-EEEEEehh------------------------cCCCCC-------CHHHHHHHHHcCCCc
Confidence 4566678888999999985 46789883 111110 011112332222222
Q ss_pred --c--cHHHHHHHHhhCCCCEEEEec-C---CHHH-HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCce
Q 021614 152 --L--SWKDVKWLQTITKLPILVKGV-L---TAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 222 (310)
Q Consensus 152 --~--~~~~i~~ir~~~~~pv~vK~~-~---~~~~-a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 222 (310)
. -...++..++. ++.-+-+.. . +.+. .+.+.+..+|+|.+-.. -....+.++.+.+ ++|
T Consensus 75 GIISTk~~~i~~Ak~~-gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEilPg---------~~p~vi~~i~~~~--~~P 142 (175)
T PF04309_consen 75 GIISTKSNLIKRAKKL-GLLTIQRIFLIDSSALETGIKQIEQSKPDAVEILPG---------VMPKVIKKIREET--NIP 142 (175)
T ss_dssp EEEESSHHHHHHHHHT-T-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEESC---------CHHHHHCCCCCCC--SS-
T ss_pred EEEeCCHHHHHHHHHc-CCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEchH---------HHHHHHHHHHHhc--CCC
Confidence 1 13456665553 454444443 2 2333 46677889999987541 1122333333332 699
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 223 VFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 223 via~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
+|+.|=|++.+|+.+++++||++|..+.+-+|
T Consensus 143 iIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 143 IIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred EEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 99999999999999999999999998876554
No 352
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=94.93 E-value=0.32 Score=44.42 Aligned_cols=95 Identities=20% Similarity=0.165 Sum_probs=62.2
Q ss_pred HHHHHHHhhCCCCEEEEe---cCCHHHHHHHHHcC-CcEEEEecCCCCCCCCCcchHHHHHHHHHHh----cCCceEEEe
Q 021614 155 KDVKWLQTITKLPILVKG---VLTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT----QGRIPVFLD 226 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~---~~~~~~a~~~~~aG-ad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~----~~~ipvia~ 226 (310)
+.++.+++..+.+...|. ..+.+++..+.++| +|+|.+.+.+.... .+ ...+.+..+.+ ..++.++++
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~i~~S 245 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEEL---DP-AVLILKARAHLDGKGLPRVKIEAS 245 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHHH---HH-HHHHHHHHHhhhhcCCCceEEEEe
Confidence 456777766543344443 24588889999999 99998876432110 11 11111111111 136889999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 227 GGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 227 GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
|||. .+.+......|.|.+++|+.+..
T Consensus 246 ggi~-~~~i~~~~~~gvd~~gvG~~~~~ 272 (281)
T cd00516 246 GGLD-EENIRAYAETGVDVFGVGTLLHS 272 (281)
T ss_pred CCCC-HHHHHHHHHcCCCEEEeCccccc
Confidence 9997 88888888899999999997653
No 353
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.90 E-value=0.23 Score=46.00 Aligned_cols=77 Identities=27% Similarity=0.411 Sum_probs=50.9
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcc-hHHHHHHHHHHhcCCceEEEecCCCCHHHHHH----HHHcCCCEEEEcHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 253 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----~l~~GAd~V~ig~~~l 253 (310)
++.+.+.|+|+|.+.+++|....-... ..+.+..+++.+.+++|||+.-|=.+-.+.++ +-.+|||++++-.|++
T Consensus 31 v~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY 110 (299)
T COG0329 31 VEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYY 110 (299)
T ss_pred HHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 467889999999998876643211111 12334445556667899888555554555443 3448999999999988
Q ss_pred HH
Q 021614 254 YS 255 (310)
Q Consensus 254 ~~ 255 (310)
+.
T Consensus 111 ~k 112 (299)
T COG0329 111 NK 112 (299)
T ss_pred cC
Confidence 74
No 354
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=94.85 E-value=0.15 Score=47.05 Aligned_cols=104 Identities=23% Similarity=0.325 Sum_probs=61.6
Q ss_pred ceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHH
Q 021614 64 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 143 (310)
Q Consensus 64 ~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (310)
+.++.+- .+.+...++++.++++|++.|.++-..+. .. .+.+.. .|. .... .+ .
T Consensus 159 pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~~--~~-~~~~~~--~~~--------------~~~~--~g---g 212 (300)
T TIGR01037 159 PVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLRG--MK-IDIKTG--KPI--------------LANK--TG---G 212 (300)
T ss_pred CEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCCc--cc-cccccC--cee--------------eCCC--Cc---c
Confidence 5666653 35556778888889999999877422111 00 000000 000 0000 00 0
Q ss_pred hhhccCCcccHHHHHHHHhhCCCCEEE-EecCCHHHHHHHHHcCCcEEEEe
Q 021614 144 VAGQIDRSLSWKDVKWLQTITKLPILV-KGVLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 144 ~~~~~~~~~~~~~i~~ir~~~~~pv~v-K~~~~~~~a~~~~~aGad~I~v~ 193 (310)
+++.......++.++++++..++||+. .++.+++++..++++|||+|.+.
T Consensus 213 ~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 213 LSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred ccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 111111223467888999988999884 55689999999999999999774
No 355
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=94.84 E-value=0.99 Score=41.53 Aligned_cols=110 Identities=16% Similarity=0.166 Sum_probs=73.0
Q ss_pred CCHHHHHHHH-HcCCcEEEEecCCCCCCCCCc--chHHHHHHHHHHhcCCceEEEecCCCCH-HHHHHHHHcCCCEEEEc
Q 021614 174 LTAEDARIAV-QAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIG 249 (310)
Q Consensus 174 ~~~~~a~~~~-~aGad~I~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~k~l~~GAd~V~ig 249 (310)
.++++|+... +.|+|.+-++...-+..+.+. -.++.|.++.+.+ ++|+..=||=..+ +++.+++.+|..-|-++
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 233 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKINVN 233 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 3688887655 589999998763222222222 3567788888776 7999998876666 77888999999999999
Q ss_pred HHHHHHhhh-------cc------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021614 250 RPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 250 ~~~l~~~~~-------~G------~~~v~~~l~~l~~~l~~~m~~~G~~ 285 (310)
+.+-.+... .. ..-.....+.+.+..+..|..+|..
T Consensus 234 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 234 TENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred hHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 976543210 00 1113334455666677777777754
No 356
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=94.76 E-value=0.44 Score=44.45 Aligned_cols=87 Identities=10% Similarity=0.253 Sum_probs=60.0
Q ss_pred ceeEEEEecC-ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHH
Q 021614 64 IRFFQLYVYK-DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 142 (310)
Q Consensus 64 ~~~~ql~~~~-d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (310)
+..+.+..+. +.+...++++.++++|++.|.|+-.+... .
T Consensus 135 pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~---------------------------------------~ 175 (312)
T PRK10550 135 PVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKED---------------------------------------G 175 (312)
T ss_pred ceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCcc---------------------------------------C
Confidence 6677766543 33557788888899999988775321100 0
Q ss_pred HhhhccCCcccHHHHHHHHhhCCCCEEEEe-cCCHHHHHHHH-HcCCcEEEEe
Q 021614 143 YVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAV-QAGAAGIIVS 193 (310)
Q Consensus 143 ~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~-~aGad~I~v~ 193 (310)
+ + -+...|+.++++++..++||+.=+ +.++++++.+. +.|+|+|-++
T Consensus 176 y-~---g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 176 Y-R---AEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred C-C---CCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 0 0 012358899999999999988654 47899998876 5899999774
No 357
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=94.73 E-value=0.12 Score=47.98 Aligned_cols=106 Identities=23% Similarity=0.337 Sum_probs=66.8
Q ss_pred ceeEEEEecC-------ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCccccccccccccccccccc
Q 021614 64 IRFFQLYVYK-------DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 136 (310)
Q Consensus 64 ~~~~ql~~~~-------d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 136 (310)
.-|+.|..-. |...+.+..+.+.+.|+..+.+..|.|...++..++.--..+|. ...+
T Consensus 165 ~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl---------------~~pI 229 (326)
T PRK11840 165 WDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPL---------------GAPI 229 (326)
T ss_pred CCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeec---------------cccc
Confidence 4588776432 44444444444444499998888887777766666522111120 0011
Q ss_pred chhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEe-cCCHHHHHHHHHcCCcEEEEe
Q 021614 137 DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~~aGad~I~v~ 193 (310)
+++.+ + ...+.|+.+++..++||++.- +.+++++..+++.|+|++-+.
T Consensus 230 Gsg~g--v-------~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 230 GSGLG--I-------QNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred cCCCC--C-------CCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 11110 1 135778888888899999884 578999999999999999764
No 358
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=94.72 E-value=0.093 Score=49.24 Aligned_cols=104 Identities=21% Similarity=0.236 Sum_probs=65.5
Q ss_pred CceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHH
Q 021614 63 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 142 (310)
Q Consensus 63 ~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (310)
-+.++.+.++.+.+.+.++++.++++|+++|.++-..+... . ...|. ... ..+
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~--~------~~~~~--------------~~~--~~g--- 255 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRP--G------LLRSP--------------LAN--ETG--- 255 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCccccc--c------ccccc--------------ccC--CCC---
Confidence 36788887555556788888889999999988753222110 0 00000 000 000
Q ss_pred HhhhccCCcccHHHHHHHHhhC--CCCEE-EEecCCHHHHHHHHHcCCcEEEEe
Q 021614 143 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 143 ~~~~~~~~~~~~~~i~~ir~~~--~~pv~-vK~~~~~~~a~~~~~aGad~I~v~ 193 (310)
-+++.......++.++.+++.. ++||+ +.++.+.+++...+.+|||+|.+.
T Consensus 256 G~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 256 GLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred ccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 0111111224578899999988 78987 555789999999999999999764
No 359
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=94.69 E-value=3.3 Score=37.65 Aligned_cols=181 Identities=19% Similarity=0.189 Sum_probs=105.6
Q ss_pred ceeeccccccccCCCHHHHHHHHHHHHcCCeeEe--CCC---CCCCHHHHH-------ccCC--CceeEEEEecCChHHH
Q 021614 13 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SSW---STSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 78 (310)
Q Consensus 13 Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~--~~~---~~~~~e~i~-------~~~~--~~~~~ql~~~~d~~~~ 78 (310)
|..+-|+.-.+-.+.++-..+.+-+.+.|+...+ ++. ...+.+|.. +... -+.+++.. ..+.+..
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~~ 81 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG-ANSTREA 81 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC-CccHHHH
Confidence 5667777544334555556677778887865443 332 234555422 2222 24555664 3466778
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHH
Q 021614 79 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 158 (310)
Q Consensus 79 ~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (310)
.++++.+++.|++++.+. .|... +. +.+-..+..+
T Consensus 82 i~~a~~a~~~Gad~v~v~--pP~y~--------------~~-----------------------------~~~~~~~~~~ 116 (281)
T cd00408 82 IELARHAEEAGADGVLVV--PPYYN--------------KP-----------------------------SQEGIVAHFK 116 (281)
T ss_pred HHHHHHHHHcCCCEEEEC--CCcCC--------------CC-----------------------------CHHHHHHHHH
Confidence 888899999999999872 22210 00 0011135577
Q ss_pred HHHhhCCCCEEEEec-------CCHHHHHHHHHc-CCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCC
Q 021614 159 WLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 230 (310)
Q Consensus 159 ~ir~~~~~pv~vK~~-------~~~~~a~~~~~a-Gad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 230 (310)
.+.+.+++|+++=.. .+++...++.+. .+.+|+-+. .....+.++.+..++++.++. |.
T Consensus 117 ~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~----------~d~~~~~~~~~~~~~~~~v~~-G~-- 183 (281)
T cd00408 117 AVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSS----------GDLDRLTRLIALLGPDFAVLS-GD-- 183 (281)
T ss_pred HHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-cc--
Confidence 777778899987543 567887777752 233333221 233444455444444555554 32
Q ss_pred CHHHHHHHHHcCCCEEEEcHHHH
Q 021614 231 RGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 231 ~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
...+...+.+|+++++.|...+
T Consensus 184 -d~~~~~~l~~G~~G~i~~~~n~ 205 (281)
T cd00408 184 -DDLLLPALALGADGAISGAANV 205 (281)
T ss_pred -hHHHHHHHHcCCCEEEehHHhh
Confidence 5677888999999999987543
No 360
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=94.67 E-value=0.22 Score=51.24 Aligned_cols=89 Identities=21% Similarity=0.272 Sum_probs=69.5
Q ss_pred cHHHHHHHHhhCCCCEEEEe-cCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCC
Q 021614 153 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 231 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (310)
+++.++.+|+.+++||..|- +.++.++..+..+|||+|.+...- + ....+..+.+..+.+ .+.++.. |++
T Consensus 99 s~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~---L--~~~~l~~l~~~a~~l--Gme~LvE--vh~ 169 (695)
T PRK13802 99 SLDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAA---L--DDAQLKHLLDLAHEL--GMTVLVE--THT 169 (695)
T ss_pred CHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhh---c--CHHHHHHHHHHHHHc--CCeEEEE--eCC
Confidence 58999999999999999997 478999999999999999876421 1 122445555555555 5666663 899
Q ss_pred HHHHHHHHHcCCCEEEEcH
Q 021614 232 GTDVFKALALGASGIFIGR 250 (310)
Q Consensus 232 ~~dv~k~l~~GAd~V~ig~ 250 (310)
.+|+.+++.+||+.++|=.
T Consensus 170 ~~el~~a~~~ga~iiGINn 188 (695)
T PRK13802 170 REEIERAIAAGAKVIGINA 188 (695)
T ss_pred HHHHHHHHhCCCCEEEEeC
Confidence 9999999999999998764
No 361
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=94.65 E-value=0.3 Score=44.69 Aligned_cols=92 Identities=20% Similarity=0.360 Sum_probs=56.1
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcch-HHHHHHHHHHhcCCceEEEecCCCCHHHHHH----HHHcCCCEEEEcHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 253 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----~l~~GAd~V~ig~~~l 253 (310)
++.+.+.|+++|.+.++.|....-.... .+.+..+.+...+++||++.=|=.+..+.++ +-.+|||+|++..|.+
T Consensus 27 i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 27 IEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 4677889999999887655432111112 2233444555556789876544445666654 3447999999999987
Q ss_pred HHhhhccHHHHHHHHHHHHH
Q 021614 254 YSLAAEGEKGVRRVLEMLRE 273 (310)
Q Consensus 254 ~~~~~~G~~~v~~~l~~l~~ 273 (310)
+.. ..+++.+++..+.+
T Consensus 107 ~~~---~~~~l~~~~~~ia~ 123 (284)
T cd00950 107 NKP---SQEGLYAHFKAIAE 123 (284)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 532 34555555555444
No 362
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.60 E-value=0.32 Score=44.61 Aligned_cols=92 Identities=20% Similarity=0.337 Sum_probs=56.9
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcch-HHHHHHHHHHhcCCceEEEecCCCCHHHHHH----HHHcCCCEEEEcHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 253 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----~l~~GAd~V~ig~~~l 253 (310)
++.+.+.|+|+|.+.++.|....-.... .+.+..+.+...+++||++.=|=.+..+.++ +-.+|||+|++..|++
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYY 104 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcC
Confidence 4667789999999877665432111122 2233444555566899887655556666554 3347999999999987
Q ss_pred HHhhhccHHHHHHHHHHHHH
Q 021614 254 YSLAAEGEKGVRRVLEMLRE 273 (310)
Q Consensus 254 ~~~~~~G~~~v~~~l~~l~~ 273 (310)
+.. ..+++.+++..+.+
T Consensus 105 ~~~---~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 105 NKP---TQEGLYQHFKAIAE 121 (285)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 34445455544433
No 363
>PLN02979 glycolate oxidase
Probab=94.56 E-value=0.25 Score=46.89 Aligned_cols=93 Identities=22% Similarity=0.268 Sum_probs=62.9
Q ss_pred ccHHHHHHHHhhCCCCEEEEecC------CHHHHHHHHHcCCcEEEEecC----CCC-----------------CCC---
Q 021614 152 LSWKDVKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNH----GAR-----------------QLD--- 201 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK~~~------~~~~a~~~~~aGad~I~v~~~----gg~-----------------~~~--- 201 (310)
.+.|.|.+ ..+-|.+.+... +.+..+++.++|+++|+++.- |-| ...
T Consensus 110 ~slEeIa~---a~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~ 186 (366)
T PLN02979 110 SSVEEVAS---TGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLD 186 (366)
T ss_pred CCHHHHHh---ccCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhcc
Confidence 34566543 345678888763 345578999999999998631 100 000
Q ss_pred --------------------CCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 202 --------------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 202 --------------------~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
....+|+.+..+++.- ++|||. .||.+.+|+.++..+|+|++.++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 187 LGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred ccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 0113466666666544 799888 567899999999999999999875
No 364
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.56 E-value=0.094 Score=49.59 Aligned_cols=104 Identities=20% Similarity=0.197 Sum_probs=66.3
Q ss_pred CceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHH
Q 021614 63 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 142 (310)
Q Consensus 63 ~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (310)
-|.++.+.++.+.+.+.++++.++++|+++|.++=..+... ++ ..+. . .. ..+
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~----~~----~~~~-~-------------~~--~~g--- 264 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRD----GL----KGLP-N-------------AD--EAG--- 264 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccc----cc----cccc-c-------------CC--CCC---
Confidence 46788887666666788889999999999998754322110 00 0000 0 00 000
Q ss_pred HhhhccCCcccHHHHHHHHhhC--CCCEE-EEecCCHHHHHHHHHcCCcEEEEe
Q 021614 143 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 143 ~~~~~~~~~~~~~~i~~ir~~~--~~pv~-vK~~~~~~~a~~~~~aGad~I~v~ 193 (310)
.+++.......|+.++++++.. ++||+ ++++.+.+++...+.+|||+|.+.
T Consensus 265 g~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 265 GLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 0010011233578899999988 78988 566789999999999999999664
No 365
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=94.55 E-value=0.14 Score=45.26 Aligned_cols=106 Identities=22% Similarity=0.321 Sum_probs=68.7
Q ss_pred ceeEEEEe-------cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCccccccccccccccccccc
Q 021614 64 IRFFQLYV-------YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 136 (310)
Q Consensus 64 ~~~~ql~~-------~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 136 (310)
.-|+.|.. ..|+-.+.+..+.+.+.||..+--+-+-|+..+|..|.--...+|- . ..+
T Consensus 98 t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl----------~-----aPI 162 (262)
T COG2022 98 TNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPL----------G-----API 162 (262)
T ss_pred CCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEeccc----------c-----ccc
Confidence 34666552 3466677788888888899877666666666666555422222231 0 000
Q ss_pred chhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEE-ecCCHHHHHHHHHcCCcEEEEe
Q 021614 137 DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK-~~~~~~~a~~~~~aGad~I~v~ 193 (310)
+++ .--.+...++-++++.++||+|- ++-++.+|-.+++.|+|+|.+.
T Consensus 163 GSg---------~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 163 GSG---------LGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred cCC---------cCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 111 01123467888999999999987 4568999999999999999763
No 366
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.54 E-value=0.29 Score=44.98 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=56.9
Q ss_pred HHHHHHc-CCcEEEEecCCCCCCCCCcch-HHHHHHHHHHhcCCceEEEecCCCCHHHHHH----HHHcCCCEEEEcHHH
Q 021614 179 ARIAVQA-GAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 252 (310)
Q Consensus 179 a~~~~~a-Gad~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----~l~~GAd~V~ig~~~ 252 (310)
++.+.+. |+++|.+.++.|....-.... .+.+..+.+...+++|||+.=|-.+-.++.+ +-.+|||++++-.|+
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4667788 999999988766432111111 2233444555566899988444344555443 445899999999998
Q ss_pred HHHhhhccHHHHHHHHHHHHHH
Q 021614 253 VYSLAAEGEKGVRRVLEMLREE 274 (310)
Q Consensus 253 l~~~~~~G~~~v~~~l~~l~~~ 274 (310)
++. ..++++.+++..+.+.
T Consensus 107 y~~---~~~~~i~~~~~~v~~a 125 (288)
T cd00954 107 YYK---FSFEEIKDYYREIIAA 125 (288)
T ss_pred CCC---CCHHHHHHHHHHHHHh
Confidence 764 2345555555555443
No 367
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.52 E-value=0.29 Score=45.10 Aligned_cols=92 Identities=16% Similarity=0.261 Sum_probs=57.6
Q ss_pred HHHHHH-cCCcEEEEecCCCCCCCCCcch-HHHHHHHHHHhcCCceEEEecCCCCHHHHHH----HHHcCCCEEEEcHHH
Q 021614 179 ARIAVQ-AGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 252 (310)
Q Consensus 179 a~~~~~-aGad~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----~l~~GAd~V~ig~~~ 252 (310)
++.+.+ .|+++|.+.++.|....-.... ...+..+.+...+++||++.=|-.+-.|+++ +-.+|||++++-.|+
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 466778 9999999988766432111112 2233445555666899998666556666654 445899999999998
Q ss_pred HHHhhhccHHHHHHHHHHHHH
Q 021614 253 VYSLAAEGEKGVRRVLEMLRE 273 (310)
Q Consensus 253 l~~~~~~G~~~v~~~l~~l~~ 273 (310)
++.. .++++.+++..+.+
T Consensus 110 y~~~---~~~~l~~~f~~va~ 127 (293)
T PRK04147 110 YYPF---SFEEICDYYREIID 127 (293)
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 7642 23444444444433
No 368
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.44 E-value=2.7 Score=37.63 Aligned_cols=154 Identities=14% Similarity=0.164 Sum_probs=84.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCccc
Q 021614 74 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 153 (310)
Q Consensus 74 d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (310)
+.+...++++.+.+.|++.|++....+.. .+ |. ....
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~---------------~~--------------------------p~--~~~~ 53 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPK---------------AV--------------------------PQ--MEDD 53 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCcc---------------cc--------------------------cc--CCCH
Confidence 67888899999999999999886543221 00 00 1123
Q ss_pred HHHHHHHHhhC-CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCC-----CCCCc-chHHHHHHHHHHh-cCCceEEE
Q 021614 154 WKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-----LDYVP-ATIMALEEVVKAT-QGRIPVFL 225 (310)
Q Consensus 154 ~~~i~~ir~~~-~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~-----~~~~~-~~~~~l~~i~~~~-~~~ipvia 225 (310)
++.++.+++.. +.++.+=.....++++.+.++|++.|.++..+... ...+. ..++.+.+..+.. ...+++..
T Consensus 54 ~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 133 (265)
T cd03174 54 WEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEG 133 (265)
T ss_pred HHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 67788888876 45544322233788999999999999988643210 00111 1222222222221 11334333
Q ss_pred ec-CC----CCHHHHH----HHHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHH
Q 021614 226 DG-GV----RRGTDVF----KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 274 (310)
Q Consensus 226 ~G-GI----~~~~dv~----k~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~ 274 (310)
+- .+ .+.+++. ++.++|++.+.+.-..- .--++.+.+++..+++.
T Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G----~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 134 SLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVG----LATPEEVAELVKALREA 187 (265)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcC----CcCHHHHHHHHHHHHHh
Confidence 33 22 4444443 34558999998876421 11234455555554443
No 369
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=94.43 E-value=0.074 Score=46.94 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=42.9
Q ss_pred cCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 185 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 185 aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.|...+-+--.++. +.|...+.+.++. ...++|..||||+++.+.+...+|||.+.+|+.+..
T Consensus 163 ~g~~~~YlEagsga---~~Pv~~e~v~~v~----~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee 225 (240)
T COG1646 163 LGMPVVYLEAGSGA---GDPVPVEMVSRVL----SDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEE 225 (240)
T ss_pred hCCeEEEEEecCCC---CCCcCHHHHHHhh----ccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeec
Confidence 35555554332221 2343444444332 345999999999999999988899999999997654
No 370
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.42 E-value=0.51 Score=44.27 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=49.0
Q ss_pred HHHHHHHHcCC--cEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 177 EDARIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 177 ~~a~~~~~aGa--d~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
+.+..+.++|+ |.|.+....|. .....+.+.++++.. +++|||+ |.|.|.+++..++.+|||++.+|
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh----~~~~~e~I~~ir~~~-p~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGH----SDSVINMIQHIKKHL-PETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc----hHHHHHHHHHHHhhC-CCCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 56888999965 99999764322 233455667776654 2466555 66889999999999999999877
No 371
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.39 E-value=0.37 Score=44.59 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=64.5
Q ss_pred CceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHH
Q 021614 63 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 142 (310)
Q Consensus 63 ~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (310)
-|.++.+.+ +.+.+.++++.+.++|+++|.++=..+. ....|+...-..+ .+..+ .+.+
T Consensus 169 ~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~--~~~id~~~~~~~~-~~~~~---------------~~~g- 227 (299)
T cd02940 169 IPVIAKLTP--NITDIREIARAAKEGGADGVSAINTVNS--LMGVDLDGTPPAP-GVEGK---------------TTYG- 227 (299)
T ss_pred CCeEEECCC--CchhHHHHHHHHHHcCCCEEEEeccccc--ccccccccCCccc-cccCC---------------CCcC-
Confidence 367777753 4456778888889999999875211111 0000100000000 00000 0000
Q ss_pred HhhhccCCcccHHHHHHHHhhC--CCCEEEE-ecCCHHHHHHHHHcCCcEEEEec
Q 021614 143 YVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 143 ~~~~~~~~~~~~~~i~~ir~~~--~~pv~vK-~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
.+++....+..|+.|.++++.. ++||+.= ++.+.+++...+.+|||+|.+..
T Consensus 228 g~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~t 282 (299)
T cd02940 228 GYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCT 282 (299)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEce
Confidence 1122223445789999999998 8998743 46889999999999999998753
No 372
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.36 E-value=0.35 Score=44.66 Aligned_cols=43 Identities=28% Similarity=0.382 Sum_probs=36.1
Q ss_pred cccHHHHHHHHhhCCCCEEEE-ecCCHHHHHHHHHcCCcEEEEe
Q 021614 151 SLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 151 ~~~~~~i~~ir~~~~~pv~vK-~~~~~~~a~~~~~aGad~I~v~ 193 (310)
+..++.++++++.+++||+.= ++.+.+++..++.+|||+|.+.
T Consensus 220 p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 220 PIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVG 263 (301)
T ss_pred cccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEc
Confidence 346888999999899998854 4578999999999999999774
No 373
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.32 E-value=0.51 Score=43.42 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=36.6
Q ss_pred CcccHHHHHHHHhhCCCCEEEEe-cCCHHHHHHHHHcCCcEEEEe
Q 021614 150 RSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~~aGad~I~v~ 193 (310)
....++.++++++.+++||+.=+ +.+++++..++++|||+|.+.
T Consensus 216 ~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 216 KPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred chHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 33467889999998899988654 468999999999999999875
No 374
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=94.30 E-value=0.29 Score=42.83 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=35.1
Q ss_pred HHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEE
Q 021614 154 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIV 192 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v 192 (310)
.+.++++++.++.|+++.+. .+.++++.+.++|+|.|++
T Consensus 165 ~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 165 PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 57899999999999999975 6899999999999999986
No 375
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=94.29 E-value=0.89 Score=39.09 Aligned_cols=126 Identities=21% Similarity=0.174 Sum_probs=82.2
Q ss_pred eEEEEec-CChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHh
Q 021614 66 FFQLYVY-KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 144 (310)
Q Consensus 66 ~~ql~~~-~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (310)
|+|+-.. .+.+...++++.+.+. ++++.++.. . .
T Consensus 2 ~~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~--~------------------------------------------~ 36 (202)
T cd04726 2 LLQVALDLLDLEEALELAKKVPDG-VDIIEAGTP--L------------------------------------------I 36 (202)
T ss_pred ceEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCH--H------------------------------------------H
Confidence 5566554 4678888888888887 888776221 1 0
Q ss_pred hhccCCcccHHHHHHHHhh-CCCCEEEE--ecCC-HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCC
Q 021614 145 AGQIDRSLSWKDVKWLQTI-TKLPILVK--GVLT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR 220 (310)
Q Consensus 145 ~~~~~~~~~~~~i~~ir~~-~~~pv~vK--~~~~-~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ 220 (310)
. ....+.++.+++. .+.|+++- .... ..+++.+.++|+|+|.++.... +.....+.+..+. ..
T Consensus 37 ~-----~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~~--~g 103 (202)
T cd04726 37 K-----SEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAKK--YG 103 (202)
T ss_pred H-----HhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHHH--cC
Confidence 0 1113678889887 47888873 3322 2457889999999999875321 1122222222222 25
Q ss_pred ceEEEe-cCCCCHHHHHHHHHcCCCEEEEc
Q 021614 221 IPVFLD-GGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 221 ipvia~-GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
++++.+ =+..|+.++.+++..|+|.+.++
T Consensus 104 ~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 104 KEVQVDLIGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred CeEEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence 777765 78899999999888899999885
No 376
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.27 E-value=0.25 Score=45.35 Aligned_cols=91 Identities=20% Similarity=0.328 Sum_probs=54.6
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCCCCcchH-HHHHHHHHHhcCCceEEEecCCCCHHHHHH----HHHcCCCEEEEcHHH
Q 021614 178 DARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 252 (310)
Q Consensus 178 ~a~~~~~aGad~I~v~~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----~l~~GAd~V~ig~~~ 252 (310)
.++.+.+.|+|++.+.++.|....-..... +.+..+.+...+++||++.=|=.+-.++++ +-.+|||++++..|+
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~ 106 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPY 106 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEEST
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccc
Confidence 356778999999999887654321111222 223344555567899888655556666654 334799999999987
Q ss_pred HHHhhhccHHHHHHHHHHH
Q 021614 253 VYSLAAEGEKGVRRVLEML 271 (310)
Q Consensus 253 l~~~~~~G~~~v~~~l~~l 271 (310)
++. ...+++.++++.+
T Consensus 107 ~~~---~s~~~l~~y~~~i 122 (289)
T PF00701_consen 107 YFK---PSQEELIDYFRAI 122 (289)
T ss_dssp SSS---CCHHHHHHHHHHH
T ss_pred ccc---chhhHHHHHHHHH
Confidence 653 2334444444443
No 377
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=94.27 E-value=0.58 Score=41.16 Aligned_cols=41 Identities=20% Similarity=0.614 Sum_probs=34.5
Q ss_pred cHHHHHHHHhhCCCCEEEEe-cCCHHHHHHHHHc-CCcEEEEe
Q 021614 153 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIVS 193 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~~a-Gad~I~v~ 193 (310)
.|+.++.+++.+++||++=+ +.+.+++..+.+. |+|+|.+.
T Consensus 171 ~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 171 DWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 57889999999999998765 4689999988887 89999764
No 378
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.20 E-value=0.29 Score=45.25 Aligned_cols=110 Identities=21% Similarity=0.185 Sum_probs=63.4
Q ss_pred CceeEEEEecCChHHHHHHHHHHHHc--CCcEEEEeeCCCCCCcchHHh-hhccCCCCcccccccccccccccccccchh
Q 021614 63 GIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADI-KNRFTLPPFLTLKNFQGLDLGKMDEANDSG 139 (310)
Q Consensus 63 ~~~~~ql~~~~d~~~~~~~i~~~~~~--G~~~i~i~~~~p~~~~r~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 139 (310)
-|.++.|-++.|.+.+.++++.+.+. |++++.+. |+-..+... +. +.....+. ....+.-
T Consensus 158 iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~-Nt~~~~~~i-d~~~~~~~~~~---------------~~~~gG~ 220 (294)
T cd04741 158 IPVGVKTPPYTDPAQFDTLAEALNAFACPISFITAT-NTLGNGLVL-DPERETVVLKP---------------KTGFGGL 220 (294)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE-ccCCccccc-cCCCCCcccCC---------------CCCCCCc
Confidence 47888998777777788888888888 88887642 211000000 00 00000000 0000000
Q ss_pred hHHHhhhccCCcccHHHHHHHHhhC--CCCEEE-EecCCHHHHHHHHHcCCcEEEEec
Q 021614 140 LAAYVAGQIDRSLSWKDVKWLQTIT--KLPILV-KGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~ir~~~--~~pv~v-K~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
++..+ ....++.++++++.. ++||+. .++.+.+++...+.+|||+|.+..
T Consensus 221 SG~~i-----~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~t 273 (294)
T cd04741 221 AGAYL-----HPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGT 273 (294)
T ss_pred Cchhh-----HHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEch
Confidence 01111 123467788888887 489774 457899999999999999998754
No 379
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=94.19 E-value=0.37 Score=44.77 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=61.2
Q ss_pred HHHHHHHhhCC--CCEEEEecCC----HHHHHHHHHc---CCcEEEEecCCCCCCCCCcchHHHHHHHHHHh---c-CCc
Q 021614 155 KDVKWLQTITK--LPILVKGVLT----AEDARIAVQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRI 221 (310)
Q Consensus 155 ~~i~~ir~~~~--~pv~vK~~~~----~~~a~~~~~a---Gad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~-~~i 221 (310)
+.++..++..+ .|+.+ .+-+ ..++..+.++ ++|.|.+.+.+++. | ...+.+.++++.+ . .++
T Consensus 172 ~A~~~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~---G-~~~~~~~~~~~~l~~~g~~~~ 246 (302)
T cd01571 172 EAWKAFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRR---G-VFRYLIREVRWALDIRGYKHV 246 (302)
T ss_pred HHHHHHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCCC---C-CHHHHHHHHHHHHHhCCCCCe
Confidence 45677777654 46554 3323 3355555555 48999998754211 1 1233344444433 2 468
Q ss_pred eEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 222 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 222 pvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
.|+++||| |.+.+.+..+.|+|.+.+|+.+..
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~ 278 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAISK 278 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccCC
Confidence 89999999 599999998999999999997653
No 380
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=94.00 E-value=1.5 Score=38.78 Aligned_cols=120 Identities=17% Similarity=0.269 Sum_probs=74.9
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
..+.+.+.+-++.++++|++++++..-.+ |-.
T Consensus 69 ~~E~~iM~~DI~~~~~lG~~GVV~G~lt~------------------------------------------------dg~ 100 (241)
T COG3142 69 DDELEIMLEDIRLARELGVQGVVLGALTA------------------------------------------------DGN 100 (241)
T ss_pred hHHHHHHHHHHHHHHHcCCCcEEEeeecC------------------------------------------------CCc
Confidence 34556788888889999999987633211 111
Q ss_pred ccHHHHHHHHhhC-CCCEEEEec----CCHH-HHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEE
Q 021614 152 LSWKDVKWLQTIT-KLPILVKGV----LTAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 225 (310)
Q Consensus 152 ~~~~~i~~ir~~~-~~pv~vK~~----~~~~-~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia 225 (310)
...+.++++.+.. +++|.+-.. .++. -..++.+.|+.-|..|+ |.. ........|.++.+...+++.|++
T Consensus 101 iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsG--g~~--sa~eg~~~l~~li~~a~gri~Im~ 176 (241)
T COG3142 101 IDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSG--GKA--SALEGLDLLKRLIEQAKGRIIIMA 176 (241)
T ss_pred cCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCC--CcC--chhhhHHHHHHHHHHhcCCEEEEe
Confidence 2234566666654 566665543 3444 35889999999996544 321 122234445555555557899999
Q ss_pred ecCCCCHHHHHHH-HHcCCC
Q 021614 226 DGGVRRGTDVFKA-LALGAS 244 (310)
Q Consensus 226 ~GGI~~~~dv~k~-l~~GAd 244 (310)
.|||+ ++.+... ...|+.
T Consensus 177 GaGV~-~~N~~~l~~~tg~~ 195 (241)
T COG3142 177 GAGVR-AENIAELVLLTGVT 195 (241)
T ss_pred CCCCC-HHHHHHHHHhcCch
Confidence 99998 7777765 446753
No 381
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=93.85 E-value=1.1 Score=42.19 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=77.0
Q ss_pred eeecCcccCcceeeccccccccCCCH------HHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChH
Q 021614 3 TTVLGFKISMPIMIAPTAMQKMAHPE------GEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 76 (310)
Q Consensus 3 t~l~g~~~~~Pi~iapm~~~~~~~~~------~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~ 76 (310)
.+|.+.++++.|++|||+-.. ..++ ....+-+.-++-|+.+++++......+- ...++.. -++.....+
T Consensus 6 ~~ig~~~lkNRiv~apm~~~~-~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~--~~~~~~~--~i~~d~~i~ 80 (341)
T PF00724_consen 6 LKIGNLTLKNRIVMAPMTTNM-ADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEG--RGFPGQP--GIWDDEQIP 80 (341)
T ss_dssp EEETTEEESSSEEE----SST-SCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGG--SSSTTSE--BSSSHHHHH
T ss_pred eeECCEEecCCeEECCCCCCC-cccCCCCcHHHHHHHHHHHhhcCCceEEeccccccccc--ccccccc--hhchhhHHH
Confidence 468899999999999996431 1222 3345556666778888887653222110 1112211 122223346
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHH
Q 021614 77 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 156 (310)
Q Consensus 77 ~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (310)
.+.++++.+.+.|++.+ +-+..+.. ... + ........ .+........... ..+..-...+.+.
T Consensus 81 ~~k~l~~~vh~~Ga~i~-~QL~H~G~--~~~--------~-~~~~~~~~---~psa~~~~~~~~~--~~~~~~~~mt~~e 143 (341)
T PF00724_consen 81 GLKKLADAVHAHGAKII-AQLWHAGR--QAN--------P-EYSGDPPV---GPSAPSALPSPIK--FMGYPPREMTEEE 143 (341)
T ss_dssp HHHHHHHHHHHTTSEEE-EEEE--GG--GSS--------G-CCSGGGCE---ESSCSSSSSTTTT--ETSCEEEE--HHH
T ss_pred HHHHHHHHHHhcCccce-eecccccc--ccC--------c-ccCCCCcc---CcccccccCcccc--cCCCCCeeCCHHH
Confidence 67788888899999764 34443321 110 0 00000000 0000000000000 0000013456777
Q ss_pred HHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCC
Q 021614 157 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA 197 (310)
Q Consensus 157 i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg 197 (310)
|+++.+.+ .+-|+++.++|.|+|.+++..|
T Consensus 144 I~~ii~~f-----------~~AA~~A~~AGfDGVEIH~ahG 173 (341)
T PF00724_consen 144 IEEIIEDF-----------AQAARRAKEAGFDGVEIHAAHG 173 (341)
T ss_dssp HHHHHHHH-----------HHHHHHHHHTT-SEEEEEESTT
T ss_pred HHHHHHHH-----------HHHHHHHHHhccCeEeecccch
Confidence 88877753 3568999999999999987433
No 382
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=93.83 E-value=0.49 Score=43.47 Aligned_cols=92 Identities=20% Similarity=0.344 Sum_probs=55.8
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcch-HHHHHHHHHHhcCCceEEEecCCCCHHHHHH----HHHcCCCEEEEcHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 253 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k----~l~~GAd~V~ig~~~l 253 (310)
++.+.+.|+++|.+.++.|....-.... ...+..+.+.+.+++||++.=|=.+-.+.++ +-.+|||+|++..|++
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 4677789999999877655332111222 2233445555666799876444344555553 3347999999999987
Q ss_pred HHhhhccHHHHHHHHHHHHH
Q 021614 254 YSLAAEGEKGVRRVLEMLRE 273 (310)
Q Consensus 254 ~~~~~~G~~~v~~~l~~l~~ 273 (310)
+.. .++++.+++..+.+
T Consensus 108 ~~~---~~~~i~~~~~~ia~ 124 (292)
T PRK03170 108 NKP---TQEGLYQHFKAIAE 124 (292)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 542 34555555555443
No 383
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=93.82 E-value=0.41 Score=45.58 Aligned_cols=93 Identities=22% Similarity=0.262 Sum_probs=62.3
Q ss_pred ccHHHHHHHHhhCCCCEEEEecC------CHHHHHHHHHcCCcEEEEecC----CCCC------C------C--------
Q 021614 152 LSWKDVKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNH----GARQ------L------D-------- 201 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK~~~------~~~~a~~~~~aGad~I~v~~~----gg~~------~------~-------- 201 (310)
.+.|.|.+ ..+-|.++.... +.+..+++.++|+.+|+++.- |.+. + .
T Consensus 111 ~slEeva~---~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~ 187 (367)
T PLN02493 111 SSVEEVAS---TGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLD 187 (367)
T ss_pred CCHHHHHh---cCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhcc
Confidence 34555543 345677877653 345678999999999998631 1000 0 0
Q ss_pred --------------------CCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 202 --------------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 202 --------------------~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
....+|+.+..+++.- ++|||. .||.+.+|+.+++.+|+|+|.++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 188 LGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred ccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 0112456666666543 689888 567899999999999999999875
No 384
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=93.79 E-value=5 Score=36.26 Aligned_cols=98 Identities=12% Similarity=0.024 Sum_probs=63.2
Q ss_pred HHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecC-----CCCCC-----C-CCcchHHHHHHHHHHh---cCC
Q 021614 155 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH-----GARQL-----D-YVPATIMALEEVVKAT---QGR 220 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~-----gg~~~-----~-~~~~~~~~l~~i~~~~---~~~ 220 (310)
+.++.+.+. ++++-+=.+++.+++..+.++|+++|...-+ +..+. + .+-+.+..+.++.+.. ..+
T Consensus 130 ~A~~~L~~~-GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~ 208 (252)
T cd00439 130 PAIKDLIAA-GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKK 208 (252)
T ss_pred HHHHHHHHC-CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCC
Confidence 345555443 7888777789999999999999999976531 11000 0 0013344444444332 235
Q ss_pred ceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHh
Q 021614 221 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 256 (310)
Q Consensus 221 ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~ 256 (310)
..|++ ..+++..++.+++ |+|.|-+.-.++..+
T Consensus 209 tkiL~-AS~r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 209 QRVLW-ASFSDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred CeEEE-EeeCCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 56655 4588999997755 999999998887754
No 385
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=93.79 E-value=2.7 Score=37.15 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=36.9
Q ss_pred cHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021614 153 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
..+.++++++..++||+.=+..+.+.+..+.++|+++|.+..
T Consensus 152 gl~~l~~~~~~~~iPvvAIGGI~~~n~~~~~~~GA~giAvis 193 (221)
T PRK06512 152 NLSLAEWWAEMIEIPCIVQAGSDLASAVEVAETGAEFVALER 193 (221)
T ss_pred ChHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhCCCEEEEhH
Confidence 457788888888999998888899999999999999998764
No 386
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=93.73 E-value=0.44 Score=44.30 Aligned_cols=107 Identities=24% Similarity=0.360 Sum_probs=65.9
Q ss_pred CceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHH
Q 021614 63 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 142 (310)
Q Consensus 63 ~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (310)
-|.++.|-+ +.+.+.++.+.++++|++++.++ |+-..+-+ -+.... -|. .... .|
T Consensus 162 ~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~-NT~~~~~~-id~~~~--~~~--------------~~~~--~G--- 216 (310)
T COG0167 162 VPVFVKLAP--NITDIDEIAKAAEEAGADGLIAI-NTTKSGMK-IDLETK--KPV--------------LANE--TG--- 216 (310)
T ss_pred CceEEEeCC--CHHHHHHHHHHHHHcCCcEEEEE-eecccccc-cccccc--ccc--------------cCcC--CC---
Confidence 477888864 78888899999999999997752 21110000 011000 000 0000 00
Q ss_pred HhhhccCCcccHHHHHHHHhhCC--CCEE-EEecCCHHHHHHHHHcCCcEEEEec
Q 021614 143 YVAGQIDRSLSWKDVKWLQTITK--LPIL-VKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 143 ~~~~~~~~~~~~~~i~~ir~~~~--~pv~-vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
-+++..-.+...+.|++++++.+ +||+ +.++.|.++|..-+.+||+.|.|..
T Consensus 217 GLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~T 271 (310)
T COG0167 217 GLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGT 271 (310)
T ss_pred CcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeee
Confidence 01111112345788999999875 9976 5667899999999999999998754
No 387
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=93.68 E-value=0.44 Score=46.27 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=37.5
Q ss_pred CcccHHHHHHHHhhC---CCCEE-EEecCCHHHHHHHHHcCCcEEEEec
Q 021614 150 RSLSWKDVKWLQTIT---KLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~---~~pv~-vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
....|+.|+++++.. ++||+ ++++.+.+++...+.+|||+|.+..
T Consensus 235 ~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~t 283 (420)
T PRK08318 235 KPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCT 283 (420)
T ss_pred hHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeee
Confidence 345789999999886 78987 5567899999999999999998754
No 388
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=93.68 E-value=0.68 Score=41.91 Aligned_cols=42 Identities=33% Similarity=0.429 Sum_probs=36.6
Q ss_pred cHHHHHHHHhhCCCCEEEEecC-CHHHHHHHHHcCCcEEEEec
Q 021614 153 SWKDVKWLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~~-~~~~a~~~~~aGad~I~v~~ 194 (310)
..+.++++|+.++.||.+.... ++++++.+.++|||++++..
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 5778999999989999998754 69999999999999998754
No 389
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=93.58 E-value=0.99 Score=42.24 Aligned_cols=41 Identities=15% Similarity=0.490 Sum_probs=34.5
Q ss_pred cHHHHHHHHhhCCCCEEEEe-cCCHHHHHHHHH-cCCcEEEEe
Q 021614 153 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQ-AGAAGIIVS 193 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~~-aGad~I~v~ 193 (310)
.|+.++++++.+++||+.=+ +.++++++.+.+ .|+|+|.++
T Consensus 182 ~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 182 EYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred ChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 48899999999999988654 468999988886 699999764
No 390
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=93.56 E-value=0.73 Score=42.94 Aligned_cols=100 Identities=13% Similarity=0.197 Sum_probs=66.2
Q ss_pred cHHHHHHHHhhC--CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCC-------------CcchHHHHHHHHHHh
Q 021614 153 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 217 (310)
Q Consensus 153 ~~~~i~~ir~~~--~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~ 217 (310)
+|+=++.++... ++++-+=.+++.+.+..+.++|+++|...- ||-.++ .-+.+..+.++.+..
T Consensus 134 T~eGi~A~~~L~~~GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfV--gRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~ 211 (313)
T cd00957 134 TWEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISPFV--GRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY 211 (313)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeec--chHHHhhhhccccccCCccCCcHHHHHHHHHHHH
Confidence 445555554432 677777678899999999999999987643 221111 113444555554433
Q ss_pred ---cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhh
Q 021614 218 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 257 (310)
Q Consensus 218 ---~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~ 257 (310)
..+..|+ ...+|+..++.+ .+|+|.+-+.-.++..+.
T Consensus 212 ~~~~~~T~vm-aASfRn~~~v~~--laG~d~~Ti~p~ll~~L~ 251 (313)
T cd00957 212 KKFGYKTKVM-GASFRNIGQILA--LAGCDYLTISPALLEELK 251 (313)
T ss_pred HHcCCCcEEE-ecccCCHHHHHH--HhCCCeEEcCHHHHHHHH
Confidence 2244455 567999999987 579999999998887654
No 391
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=93.55 E-value=0.9 Score=42.38 Aligned_cols=41 Identities=20% Similarity=0.669 Sum_probs=34.2
Q ss_pred cHHHHHHHHhhCCCCEEEEe-cCCHHHHHHHH-HcCCcEEEEe
Q 021614 153 SWKDVKWLQTITKLPILVKG-VLTAEDARIAV-QAGAAGIIVS 193 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~-~aGad~I~v~ 193 (310)
.|+.++++++.+++||+.=+ +.+++++..+. +.|+|+|.++
T Consensus 180 ~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 180 NWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred hHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 47889999999999988654 57899998888 6899999773
No 392
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=93.54 E-value=0.7 Score=43.33 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=34.8
Q ss_pred ccHHHHHHHHhhCC-CCEEEEe-cCCHHHHHHHHH-cCCcEEEEe
Q 021614 152 LSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 193 (310)
Q Consensus 152 ~~~~~i~~ir~~~~-~pv~vK~-~~~~~~a~~~~~-aGad~I~v~ 193 (310)
..|+.|+++++..+ +||+.=+ +.+.++++...+ .|+|+|-+.
T Consensus 184 ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 184 ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred cCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 56999999999997 9999765 368999987766 579999763
No 393
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=93.53 E-value=0.65 Score=43.79 Aligned_cols=78 Identities=10% Similarity=0.094 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCccc
Q 021614 74 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 153 (310)
Q Consensus 74 d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (310)
+.+...++++.+++.|++.|.|+.+.... +. . ...+...
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-------------~~-~---------------------------~~~~~~~ 263 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVP-------------AR-I---------------------------DVYPGYQ 263 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------------CC-C---------------------------CCCcccc
Confidence 56777888888888999998887663110 00 0 0011224
Q ss_pred HHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcC-CcEEEE
Q 021614 154 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIV 192 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aG-ad~I~v 192 (310)
++..+.+++.+++||++=+. .+++++..+++.| +|.|.+
T Consensus 264 ~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 264 VPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred HHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 67788899999999876554 6899999999887 998854
No 394
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.49 E-value=1.8 Score=39.29 Aligned_cols=41 Identities=32% Similarity=0.270 Sum_probs=34.7
Q ss_pred cHHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021614 153 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~ 194 (310)
..+.++++|+.++.|+++... .++++++.+.+. ||+++|..
T Consensus 188 ~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 188 LAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 456899999988999999865 589999999875 99998864
No 395
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=93.47 E-value=0.55 Score=41.89 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=32.1
Q ss_pred ccHHHHHHHHhhCCCCEEEE-ecCCHHHHHHHHHcCCcEEEEe
Q 021614 152 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK-~~~~~~~a~~~~~aGad~I~v~ 193 (310)
..|+.|++++ .++||+.= .+.+.+++..+.+.|+|+|.+.
T Consensus 180 ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 180 ADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred CcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 3478888887 67998753 4578999999999999999874
No 396
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=93.37 E-value=3 Score=38.38 Aligned_cols=110 Identities=17% Similarity=0.252 Sum_probs=71.0
Q ss_pred CCHHHHHHHH-HcCCcEEEEecCCCCCCCCC--cchHHHHHHHHHHhcCCceEEEecCCCC-HHHHHHHHHcCCCEEEEc
Q 021614 174 LTAEDARIAV-QAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIG 249 (310)
Q Consensus 174 ~~~~~a~~~~-~aGad~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvia~GGI~~-~~dv~k~l~~GAd~V~ig 249 (310)
.++++|.... +.|+|.+-++...-+..+.+ .-.++.|.++.+.+ ++|+..=||=.. .+++.|++.+|..-|-++
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~ 232 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNVA 232 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 3688887665 57999999875322222212 23577889998877 799888775333 577778999999999999
Q ss_pred HHHHHHhhh-------cc---H---HHHHHHHHHHHHHHHHHHHHcCCC
Q 021614 250 RPVVYSLAA-------EG---E---KGVRRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 250 ~~~l~~~~~-------~G---~---~~v~~~l~~l~~~l~~~m~~~G~~ 285 (310)
+.+..+... .. . .-.....+.+++-.++.|..+|..
T Consensus 233 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 233 TELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred cHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 977554211 00 0 112333455666666777777654
No 397
>PTZ00411 transaldolase-like protein; Provisional
Probab=93.35 E-value=1.1 Score=42.23 Aligned_cols=101 Identities=15% Similarity=0.275 Sum_probs=65.7
Q ss_pred cHHHHHHHHhh--CCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCC-------------CcchHHHHHHHHHHh
Q 021614 153 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 217 (310)
Q Consensus 153 ~~~~i~~ir~~--~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~ 217 (310)
+|+=++.++.. -++++-+=.+++...+..+.++|+++|...- ||-.++ +-+.+..+.++.+..
T Consensus 146 T~eGi~Aa~~L~~eGI~~N~TlvFS~~QA~aaaeAGa~~ISPfV--GRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 223 (333)
T PTZ00411 146 TWEGIQAAKALEKEGIHCNLTLLFSFAQAVACAQAGVTLISPFV--GRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY 223 (333)
T ss_pred CHHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCCEEEeec--chHHHhcccccccccccccCCchHHHHHHHHHHH
Confidence 34445444433 2677766667899999999999999987643 221111 223445555554433
Q ss_pred c--CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhh
Q 021614 218 Q--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 257 (310)
Q Consensus 218 ~--~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~ 257 (310)
+ +--..|....+||..++.+ .+|||.+-+.-.++..+.
T Consensus 224 k~~g~~T~Im~ASfRn~~qi~~--laG~D~lTi~p~ll~~L~ 263 (333)
T PTZ00411 224 KKHGYKTIVMGASFRNTGEILE--LAGCDKLTISPKLLEELA 263 (333)
T ss_pred HHcCCCeEEEecccCCHHHHHH--HHCCCEEeCCHHHHHHHH
Confidence 2 1223555577999999987 389999999988887654
No 398
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=93.33 E-value=6.2 Score=35.94 Aligned_cols=182 Identities=19% Similarity=0.191 Sum_probs=103.6
Q ss_pred cceeeccccccccCCCHHHHHHHHHHHHcCCeeEe--CCC---CCCCHHHHH-------ccCCC--ceeEEEEecCChHH
Q 021614 12 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SSW---STSSVEEVA-------STGPG--IRFFQLYVYKDRNV 77 (310)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~--~~~---~~~~~e~i~-------~~~~~--~~~~ql~~~~d~~~ 77 (310)
.|..+.|+.-.+-.+.++-..+.+-+.+.|+...+ ++. -..+.+|.. +...+ +.++++. ..+.+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG-SNNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC-CccHHH
Confidence 46667787544334555556677777888875433 332 234454422 12222 4455655 356788
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHH
Q 021614 78 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 157 (310)
Q Consensus 78 ~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 157 (310)
..++++.+++.|++++.+. .|... + . +.+-..+..
T Consensus 84 ~~~~a~~a~~~G~d~v~~~--~P~~~------------~---------------------~----------~~~~l~~~~ 118 (284)
T cd00950 84 AIELTKRAEKAGADAALVV--TPYYN------------K---------------------P----------SQEGLYAHF 118 (284)
T ss_pred HHHHHHHHHHcCCCEEEEc--ccccC------------C---------------------C----------CHHHHHHHH
Confidence 8889999999999998873 22210 0 0 001113456
Q ss_pred HHHHhhCCCCEEEEec-------CCHHHHHHHHHc-CCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCC
Q 021614 158 KWLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 229 (310)
Q Consensus 158 ~~ir~~~~~pv~vK~~-------~~~~~a~~~~~a-Gad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (310)
+.+.+..++||++=.. ++++...++.+. .+-+|+-+. .....+.++.+..+.++.++. |
T Consensus 119 ~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s~----------~~~~~~~~~~~~~~~~~~v~~-G-- 185 (284)
T cd00950 119 KAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEAT----------GDLDRVSELIALCPDDFAVLS-G-- 185 (284)
T ss_pred HHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEECC----------CCHHHHHHHHHhCCCCeEEEe-C--
Confidence 7777777888885432 567777777654 233333211 123334444444444555554 3
Q ss_pred CCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 230 RRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 230 ~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
....+...+.+|+++++.|..-+
T Consensus 186 -~d~~~~~~~~~G~~G~~s~~~n~ 208 (284)
T cd00950 186 -DDALTLPFLALGGVGVISVAANV 208 (284)
T ss_pred -ChHhHHHHHHCCCCEEEehHHHh
Confidence 23456678889999999888644
No 399
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.28 E-value=1.2 Score=37.72 Aligned_cols=65 Identities=23% Similarity=0.202 Sum_probs=44.2
Q ss_pred HHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcC-CceEEEecCCCC--------HHHHHHHHHcCCCEEEE
Q 021614 178 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRR--------GTDVFKALALGASGIFI 248 (310)
Q Consensus 178 ~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~-~ipvia~GGI~~--------~~dv~k~l~~GAd~V~i 248 (310)
.++.+.+.|+|+|.+.+ ..+..+.+...+ ++|+++.=|-.+ .+.+.++..+|||++++
T Consensus 18 ~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v 84 (201)
T cd00945 18 LCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDV 84 (201)
T ss_pred HHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 35778889999998754 344445555555 789776433332 34555677899999999
Q ss_pred cHHHHHH
Q 021614 249 GRPVVYS 255 (310)
Q Consensus 249 g~~~l~~ 255 (310)
..++.+.
T Consensus 85 ~~~~~~~ 91 (201)
T cd00945 85 VINIGSL 91 (201)
T ss_pred eccHHHH
Confidence 8877653
No 400
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=93.23 E-value=6.6 Score=35.97 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=58.7
Q ss_pred CCHHHHHHHH-HcCCcEEEEecCCCCCCC-C-C-cchHHHHHHHHHHhcCCceEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 021614 174 LTAEDARIAV-QAGAAGIIVSNHGARQLD-Y-V-PATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFI 248 (310)
Q Consensus 174 ~~~~~a~~~~-~aGad~I~v~~~gg~~~~-~-~-~~~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~k~l~~GAd~V~i 248 (310)
.++++++... +.|+|.+.++...-+..+ . . .-.++.|.++.+.+ ++|+..=||=..+ +++.+++..|..-+-+
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 4588887766 469999998753211122 1 1 23577889998887 7999998877666 5588899999999999
Q ss_pred cHHHHHH
Q 021614 249 GRPVVYS 255 (310)
Q Consensus 249 g~~~l~~ 255 (310)
++.+..+
T Consensus 226 ~T~l~~a 232 (276)
T cd00947 226 NTDLRLA 232 (276)
T ss_pred ChHHHHH
Confidence 9977554
No 401
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=93.17 E-value=3.3 Score=38.53 Aligned_cols=110 Identities=16% Similarity=0.113 Sum_probs=72.4
Q ss_pred CCHHHHHHHH-HcCCcEEEEecCCCCCCCC--C--cchHHHHHHHHHHhcCCceEEEecCCCCHH---------------
Q 021614 174 LTAEDARIAV-QAGAAGIIVSNHGARQLDY--V--PATIMALEEVVKATQGRIPVFLDGGVRRGT--------------- 233 (310)
Q Consensus 174 ~~~~~a~~~~-~aGad~I~v~~~gg~~~~~--~--~~~~~~l~~i~~~~~~~ipvia~GGI~~~~--------------- 233 (310)
.++++|.... +.|+|++-++-..-+..+. + .-.++.|.++++.+ ++|+..=||=..++
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~~ 232 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLKG 232 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhcccccc
Confidence 4588887765 5799999987532222221 2 23577888888876 79999988766665
Q ss_pred -------HHHHHHHcCCCEEEEcHHHHHHhhh-------cc------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021614 234 -------DVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 234 -------dv~k~l~~GAd~V~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~~l~~~m~~~G~~ 285 (310)
++.+++.+|..-|-+++.+..+... .. ..-.....+.+.+..+..|..+|..
T Consensus 233 ~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 233 SKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred ccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999999999977543210 00 0112333345566666677777654
No 402
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=93.08 E-value=3.1 Score=38.27 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=71.9
Q ss_pred CCHHHHHHHH-HcCCcEEEEecCCCCCCCCC-c-chHHHHHHHHHHhcCCceEEEecCCCCH-HHHHHHHHcCCCEEEEc
Q 021614 174 LTAEDARIAV-QAGAAGIIVSNHGARQLDYV-P-ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFIG 249 (310)
Q Consensus 174 ~~~~~a~~~~-~aGad~I~v~~~gg~~~~~~-~-~~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~k~l~~GAd~V~ig 249 (310)
.++++|+... +.|+|.+-++...-+..+.+ | -.++.|.++.+.+ ++|+..=||=..+ +++.+++.+|..-|-++
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~ 233 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKINVN 233 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEec
Confidence 4688887655 57999999876322222222 2 3577888888776 7999999987666 67778999999999999
Q ss_pred HHHHHHhhh-------cc------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021614 250 RPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 250 ~~~l~~~~~-------~G------~~~v~~~l~~l~~~l~~~m~~~G~~ 285 (310)
+.+-.+... .. ..-.....+.+++.++..|+.+|..
T Consensus 234 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 234 TENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred cHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 977443110 00 0112233455566666667766654
No 403
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=92.92 E-value=5 Score=33.75 Aligned_cols=44 Identities=25% Similarity=0.450 Sum_probs=37.3
Q ss_pred cccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021614 151 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 151 ~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
...++.++++++..++||++-+..+.+.+..+.++|+|++.++.
T Consensus 136 ~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 136 PLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEeh
Confidence 34578889998888899998887788999999999999998754
No 404
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=92.89 E-value=5.3 Score=36.80 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=44.0
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEE---EecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi---a~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
++...++|||.|.+.+ +.+.+.+.++.+.+ +.|++ ..+|-.-.-++.+.-++|.+.|..|..++.+
T Consensus 167 a~ay~~AGAD~vfi~g---------~~~~e~i~~~~~~i--~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 167 AKAYVEAGADMIFPEA---------LTSLEEFRQFAKAV--KVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred HHHHHHcCCCEEEeCC---------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHHH
Confidence 5778899999998743 23456666776666 46763 3344211124555667899999999887764
No 405
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=92.89 E-value=8.4 Score=36.23 Aligned_cols=233 Identities=16% Similarity=0.150 Sum_probs=115.5
Q ss_pred ceeeccccccccCCCHHH--HHHHHHHHHcCCeeEeCCCCCCCHHHHHccC-CC------cee-----EEEE--ecCChH
Q 021614 13 PIMIAPTAMQKMAHPEGE--YATARAASAAGTIMTLSSWSTSSVEEVASTG-PG------IRF-----FQLY--VYKDRN 76 (310)
Q Consensus 13 Pi~iapm~~~~~~~~~~~--~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~-~~------~~~-----~ql~--~~~d~~ 76 (310)
|++||=++.. .+.+-| ..|.++|.+.|+.. +=-+. ...+++.... +. ..| +.+| ..-+.+
T Consensus 1 ~~iIAEig~N--H~Gdl~~A~~lI~~A~~aGada-VKfQt-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e 76 (329)
T TIGR03569 1 TFIIAEAGVN--HNGSLELAKKLVDAAAEAGADA-VKFQT-FKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEE 76 (329)
T ss_pred CEEEEEeCCC--ccCcHHHHHHHHHHHHHhCCCE-EEeee-CCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHH
Confidence 6788888664 112223 33777899999763 32222 3334432111 10 011 1111 123457
Q ss_pred HHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHH
Q 021614 77 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 156 (310)
Q Consensus 77 ~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (310)
+...+.+.+++.|...+- +|-. ...-|+-..+..| .++-+ +.+. ..+..
T Consensus 77 ~~~~L~~~~~~~Gi~~~s----tpfd-~~svd~l~~~~v~--------------~~KIa----S~~~--------~n~pL 125 (329)
T TIGR03569 77 DHRELKEYCESKGIEFLS----TPFD-LESADFLEDLGVP--------------RFKIP----SGEI--------TNAPL 125 (329)
T ss_pred HHHHHHHHHHHhCCcEEE----EeCC-HHHHHHHHhcCCC--------------EEEEC----cccc--------cCHHH
Confidence 777888888999987653 2221 1111221122111 11111 0110 13667
Q ss_pred HHHHHhhCCCCEEEEec-CCHHHH----HHHHHcCCc---EEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecC
Q 021614 157 VKWLQTITKLPILVKGV-LTAEDA----RIAVQAGAA---GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 228 (310)
Q Consensus 157 i~~ir~~~~~pv~vK~~-~~~~~a----~~~~~aGad---~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (310)
|+.+.+ +++||+++.. .+.++. ..+.+.|.+ .+.++-...+........+..+..+++.. .+||..++-
T Consensus 126 L~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG~SdH 202 (329)
T TIGR03569 126 LKKIAR-FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVGYSDH 202 (329)
T ss_pred HHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEEECCC
Confidence 777755 5899999975 455553 445567875 34333211111111123455566566555 589998764
Q ss_pred CCCHHHHHHHHHcCCCEEEEcHHHHHHhhhccHHH---H-HHHHHHHHHHHHHHHHHcCCC
Q 021614 229 VRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG---V-RRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 229 I~~~~dv~k~l~~GAd~V~ig~~~l~~~~~~G~~~---v-~~~l~~l~~~l~~~m~~~G~~ 285 (310)
-....-...+.++||+ +|=+-|.-.-...|.+. + -+-+..+.++++..-..+|..
T Consensus 203 t~G~~~~~aAvalGA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~ 261 (329)
T TIGR03569 203 TLGIEAPIAAVALGAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDG 261 (329)
T ss_pred CccHHHHHHHHHcCCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 4433444567789998 55554433222223211 0 122456666677777777743
No 406
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=92.84 E-value=1.3 Score=39.85 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=45.6
Q ss_pred HHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHH
Q 021614 154 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 233 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~ 233 (310)
|..+.+.++..++.++. ...+.+.+..+.+.|++++.+... ....+..|..+++ .+.|||.|-|..+-+
T Consensus 58 ~~~L~~~~~~~gi~f~s-tpfd~~s~d~l~~~~~~~~KIaS~-------dl~n~~lL~~~A~---tgkPvIlSTG~stl~ 126 (241)
T PF03102_consen 58 HKELFEYCKELGIDFFS-TPFDEESVDFLEELGVPAYKIASG-------DLTNLPLLEYIAK---TGKPVILSTGMSTLE 126 (241)
T ss_dssp HHHHHHHHHHTT-EEEE-EE-SHHHHHHHHHHT-SEEEE-GG-------GTT-HHHHHHHHT---T-S-EEEE-TT--HH
T ss_pred HHHHHHHHHHcCCEEEE-CCCCHHHHHHHHHcCCCEEEeccc-------cccCHHHHHHHHH---hCCcEEEECCCCCHH
Confidence 44455555555665553 346788899999999999999652 1234555655543 379999999999999
Q ss_pred HHHHHHH
Q 021614 234 DVFKALA 240 (310)
Q Consensus 234 dv~k~l~ 240 (310)
++.+++.
T Consensus 127 EI~~Av~ 133 (241)
T PF03102_consen 127 EIERAVE 133 (241)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988775
No 407
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=92.81 E-value=1.4 Score=40.63 Aligned_cols=86 Identities=20% Similarity=0.170 Sum_probs=58.3
Q ss_pred HHHhhCCCCEEEEecC--CHH----HHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCH
Q 021614 159 WLQTITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 232 (310)
Q Consensus 159 ~ir~~~~~pv~vK~~~--~~~----~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (310)
.+++..+.|+++.... +++ .++.+.+.|+|+|.+..... + .+....++.+.++++.. ++||++- ++.+.
T Consensus 109 ~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p-~-~~~~~~~~~i~~l~~~~--~~pvivK-~v~s~ 183 (299)
T cd02809 109 EVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTP-V-LGRRLTWDDLAWLRSQW--KGPLILK-GILTP 183 (299)
T ss_pred HHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCC-C-CCCCCCHHHHHHHHHhc--CCCEEEe-ecCCH
Confidence 4444445788877652 333 45667789999998864211 0 01113466777777665 5898885 58899
Q ss_pred HHHHHHHHcCCCEEEEc
Q 021614 233 TDVFKALALGASGIFIG 249 (310)
Q Consensus 233 ~dv~k~l~~GAd~V~ig 249 (310)
+++.++..+|||++.+.
T Consensus 184 ~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 184 EDALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHHHCCCCEEEEc
Confidence 99999999999999884
No 408
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=92.80 E-value=4.1 Score=37.47 Aligned_cols=110 Identities=17% Similarity=0.246 Sum_probs=69.7
Q ss_pred CCHHHHHHHH-HcCCcEEEEecCCCCCCCCC--cchHHHHHHHHHHhcCCceEEEecCCCC-HHHHHHHHHcCCCEEEEc
Q 021614 174 LTAEDARIAV-QAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIG 249 (310)
Q Consensus 174 ~~~~~a~~~~-~aGad~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvia~GGI~~-~~dv~k~l~~GAd~V~ig 249 (310)
.++++|+... +.|+|.+-++...-+..+.+ .-.++.|.++.+.+ ++|+..=||=.. .+++.|++..|..-|-++
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 155 TDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVNVA 232 (284)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 4688887765 57999999875322222212 23577888888876 789888775333 567788999999999999
Q ss_pred HHHHHHhhh-------cc------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021614 250 RPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 250 ~~~l~~~~~-------~G------~~~v~~~l~~l~~~l~~~m~~~G~~ 285 (310)
+.+..+... .. ..-.....+.+++..+..|+.+|..
T Consensus 233 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 233 TELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred cHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 977543210 00 0112233345566666666666643
No 409
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=92.78 E-value=0.79 Score=42.00 Aligned_cols=44 Identities=30% Similarity=0.542 Sum_probs=37.1
Q ss_pred cccHHHHHHHHhhCCCCEE---EEecCCHHHHHHHHHcCCcEEEEec
Q 021614 151 SLSWKDVKWLQTITKLPIL---VKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 151 ~~~~~~i~~ir~~~~~pv~---vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
...++.++++++..++||+ ..++.+++++..+.++|+|+|.+..
T Consensus 189 ~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGS 235 (293)
T PRK04180 189 QAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGS 235 (293)
T ss_pred CCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcH
Confidence 3458999999998899986 4445699999999999999998864
No 410
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=92.76 E-value=0.27 Score=41.83 Aligned_cols=77 Identities=27% Similarity=0.348 Sum_probs=54.0
Q ss_pred eeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHh
Q 021614 65 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 144 (310)
Q Consensus 65 ~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (310)
.-+|=.+--|-..++..++.+++...|++++ -|. +
T Consensus 93 ~tIqRiFliDS~al~~~~~~i~~~~PD~vEi---lPg------------------------------------------~ 127 (175)
T PF04309_consen 93 LTIQRIFLIDSSALETGIKQIEQSKPDAVEI---LPG------------------------------------------V 127 (175)
T ss_dssp EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEE---ESC------------------------------------------C
T ss_pred EEEEEeeeecHHHHHHHHHHHhhcCCCEEEE---chH------------------------------------------H
Confidence 3445544678888888888888888888876 111 0
Q ss_pred hhccCCcccHHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021614 145 AGQIDRSLSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 145 ~~~~~~~~~~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~ 194 (310)
. -+.++++++.++.|++..+- .+.|++..+.++||++|..|+
T Consensus 128 ~--------p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 128 M--------PKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp H--------HHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--
T ss_pred H--------HHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCC
Confidence 1 15688888889999999875 689999999999999998764
No 411
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=92.72 E-value=3.6 Score=37.93 Aligned_cols=110 Identities=23% Similarity=0.276 Sum_probs=73.8
Q ss_pred CCHHHHHHHH-HcCCcEEEEecCCCCCCC-CCc--chHHHHHHHHHHhcCCceEEEecCCCCH-HHHHHHHHcCCCEEEE
Q 021614 174 LTAEDARIAV-QAGAAGIIVSNHGARQLD-YVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFI 248 (310)
Q Consensus 174 ~~~~~a~~~~-~aGad~I~v~~~gg~~~~-~~~--~~~~~l~~i~~~~~~~ipvia~GGI~~~-~dv~k~l~~GAd~V~i 248 (310)
.++++|+... +.|+|.+-++...-+..+ ..| -.++.|.++.+.+ ++|+..=||=..+ +++.+++..|..-|-+
T Consensus 158 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 235 (288)
T TIGR00167 158 TDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKVNI 235 (288)
T ss_pred CCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEc
Confidence 3578887766 479999998753222222 223 3678889998877 7999999987766 5788899999999999
Q ss_pred cHHHHHHhhh-------cc------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021614 249 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 249 g~~~l~~~~~-------~G------~~~v~~~l~~l~~~l~~~m~~~G~~ 285 (310)
++.+..+... .. ..-.....+.+.+.+++.|..+|..
T Consensus 236 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 236 DTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred ChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977543210 00 0113334456666677777777754
No 412
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.72 E-value=1.3 Score=38.10 Aligned_cols=80 Identities=29% Similarity=0.255 Sum_probs=52.0
Q ss_pred HHHHHHHHhhCCC-CEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCH
Q 021614 154 WKDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 232 (310)
Q Consensus 154 ~~~i~~ir~~~~~-pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (310)
.+.++.+++..+. -+-...+.+.++++.+.++|+|+|+. +|- +++ +.++++.. +++.+. | .+|+
T Consensus 51 ~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~-p~~------~~~----~~~~~~~~--~~~~i~-G-~~t~ 115 (187)
T PRK07455 51 AELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFT-PHV------DPE----LIEAAVAQ--DIPIIP-G-ALTP 115 (187)
T ss_pred HHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEEC-CCC------CHH----HHHHHHHc--CCCEEc-C-cCCH
Confidence 3456666655432 12233446779999999999999964 321 111 12233332 455544 4 9999
Q ss_pred HHHHHHHHcCCCEEEE
Q 021614 233 TDVFKALALGASGIFI 248 (310)
Q Consensus 233 ~dv~k~l~~GAd~V~i 248 (310)
.++.++..+|||.+.+
T Consensus 116 ~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 116 TEIVTAWQAGASCVKV 131 (187)
T ss_pred HHHHHHHHCCCCEEEE
Confidence 9999999999999987
No 413
>TIGR03586 PseI pseudaminic acid synthase.
Probab=92.70 E-value=3.5 Score=38.76 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=86.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
++|.+...++++.++++|++++=...-. ...+-.... +..... .... .. .....+.+.. ..
T Consensus 13 ~G~~~~A~~lI~~A~~aGAdavKFQ~~~------~~~l~~~~~-~~~~~~---~~~~---~~---~~~~~~~~~~---~e 73 (327)
T TIGR03586 13 NGSLERALAMIEAAKAAGADAIKLQTYT------PDTITLDSD-RPEFII---KGGL---WD---GRTLYDLYQE---AH 73 (327)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEeeecc------HHHhhcccc-cccccc---ccCC---cC---CccHHHHHHH---hh
Confidence 4688999999999999999986553321 111100000 000000 0000 00 0000111111 23
Q ss_pred ccHHH---HHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecC
Q 021614 152 LSWKD---VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 228 (310)
Q Consensus 152 ~~~~~---i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (310)
+.++. +.+.++..+++++. ..++.+.+..+.+.|++++.+... -...+..|..+.+. ..||+.+-|
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~s-tpfd~~svd~l~~~~v~~~KI~S~-------~~~n~~LL~~va~~---gkPvilstG 142 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFS-SPFDETAVDFLESLDVPAYKIASF-------EITDLPLIRYVAKT---GKPIIMSTG 142 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEE-ccCCHHHHHHHHHcCCCEEEECCc-------cccCHHHHHHHHhc---CCcEEEECC
Confidence 33444 55557777888773 456778889999999999998642 12345666665542 689999999
Q ss_pred CCCHHHHHHHHH----cCCCEEEE
Q 021614 229 VRRGTDVFKALA----LGASGIFI 248 (310)
Q Consensus 229 I~~~~dv~k~l~----~GAd~V~i 248 (310)
..+.+++..++. .|..-+.+
T Consensus 143 ~~t~~Ei~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 143 IATLEEIQEAVEACREAGCKDLVL 166 (327)
T ss_pred CCCHHHHHHHHHHHHHCCCCcEEE
Confidence 999999987764 47755555
No 414
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=92.70 E-value=3.1 Score=37.16 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=67.3
Q ss_pred HHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHH---HHhcCC-ceEEEecCCC
Q 021614 155 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV---KATQGR-IPVFLDGGVR 230 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~---~~~~~~-ipvia~GGI~ 230 (310)
..++.+.+. ++++-+=.++|..+|..+.++|+++|..+- ||-.|++......+.+++ +..... ..+++ -+++
T Consensus 106 ~Ai~~L~~e-GI~~NvTLiFS~~QAl~aa~aga~~iSpFv--gRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~v-as~~ 181 (239)
T COG0176 106 KAIKALEAE-GIKTNVTLIFSAAQALLAAEAGATYISPFV--GRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLV-ASAR 181 (239)
T ss_pred HHHHHHHHC-CCeeeEEEEecHHHHHHHHHhCCeEEEeec--chHHhhccCchHHHHHHHHHHHHhccccceEEE-ecCc
Confidence 345555444 466666567899999999999999886543 454444433333444433 332222 34444 4689
Q ss_pred CHHHHHHHHHcCCCEEEEcHHHHHHhhhc
Q 021614 231 RGTDVFKALALGASGIFIGRPVVYSLAAE 259 (310)
Q Consensus 231 ~~~dv~k~l~~GAd~V~ig~~~l~~~~~~ 259 (310)
++.++..+..+|||.+-+.-..+..+..+
T Consensus 182 ~~~~~~~~~l~G~d~~Tip~~~l~~l~~~ 210 (239)
T COG0176 182 FPNHVYIAALAGADVLTIPPDLLKQLLKH 210 (239)
T ss_pred cHHHHHHHHHhCCCcccCCHHHHHHHHhc
Confidence 99999999999999999999888876544
No 415
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=92.51 E-value=8.5 Score=35.37 Aligned_cols=110 Identities=16% Similarity=0.244 Sum_probs=71.1
Q ss_pred CCHHHHHHHH-HcCCcEEEEecCCCCCCCCC--cchHHHHHHHHHHhcCCceEEEecCCCC-HHHHHHHHHcCCCEEEEc
Q 021614 174 LTAEDARIAV-QAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIG 249 (310)
Q Consensus 174 ~~~~~a~~~~-~aGad~I~v~~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvia~GGI~~-~~dv~k~l~~GAd~V~ig 249 (310)
.++++|+... +.|+|.+-++...-+..+.+ .-.++.|.++++.+ ++|+..=||=.. .+++.+++.+|..-|-++
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 230 (282)
T TIGR01858 153 TDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKVNVA 230 (282)
T ss_pred CCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 3578876654 68999999875322222222 23577889998877 789888876444 466778999999999999
Q ss_pred HHHHHHhhh-------cc------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021614 250 RPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 250 ~~~l~~~~~-------~G------~~~v~~~l~~l~~~l~~~m~~~G~~ 285 (310)
+.+..+... .. ..-.....+.+++-++..|+.+|..
T Consensus 231 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 231 TELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred cHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 977543210 00 1113334455666667777777754
No 416
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=92.48 E-value=5.8 Score=34.85 Aligned_cols=43 Identities=21% Similarity=0.469 Sum_probs=38.1
Q ss_pred cccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEe
Q 021614 151 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 151 ~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~ 193 (310)
...++.++++++...+|+++-+..+.+.+..+.++|+|+|.+.
T Consensus 144 ~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 144 PLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred ccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 3457889999998889999988899999999999999999875
No 417
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.46 E-value=2.5 Score=38.45 Aligned_cols=97 Identities=23% Similarity=0.331 Sum_probs=60.2
Q ss_pred HHHHHHHHhhCCCCEEEEec--CCHHH----HHHHHHcCCcEEEEecCCCCCCCCCc---chHHHHHHHHHHhcCCceEE
Q 021614 154 WKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVP---ATIMALEEVVKATQGRIPVF 224 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~--~~~~~----a~~~~~aGad~I~v~~~gg~~~~~~~---~~~~~l~~i~~~~~~~ipvi 224 (310)
.+.++++ ...++||++|.. .+.++ ++.+...|-.-+.+--+|.+.....+ ..+..+..+++.. .+||+
T Consensus 124 ~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV~ 200 (266)
T PRK13398 124 FELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPII 200 (266)
T ss_pred HHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCEE
Confidence 4556666 457899999976 36655 34556678876766655553322222 1233334444333 58999
Q ss_pred Ee-cCCCC-----HHHHHHHHHcCCCEEEEcHHHH
Q 021614 225 LD-GGVRR-----GTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 225 a~-GGI~~-----~~dv~k~l~~GAd~V~ig~~~l 253 (310)
.+ +--.. ......++++||+++++-+-+.
T Consensus 201 ~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 201 VDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred EeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 95 33223 5667778899999999998653
No 418
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=92.45 E-value=2.2 Score=39.93 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=59.0
Q ss_pred CceeEEEEecCCh----HHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccch
Q 021614 63 GIRFFQLYVYKDR----NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDS 138 (310)
Q Consensus 63 ~~~~~ql~~~~d~----~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 138 (310)
.+..+.+..+.+. +...++++.+++.|++.|.||-.+... .++. .
T Consensus 124 ~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~--------qg~s-----------------------g 172 (318)
T TIGR00742 124 IPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWL--------SGLS-----------------------P 172 (318)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhh--------cCCC-----------------------c
Confidence 3667777654322 455677788888999988776443210 0000 0
Q ss_pred hhHHHhhhccCCcccHHHHHHHHhhC-CCCEEEE-ecCCHHHHHHHHHcCCcEEEEe
Q 021614 139 GLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~ir~~~-~~pv~vK-~~~~~~~a~~~~~aGad~I~v~ 193 (310)
..... -+...|+.++++++.. ++||+.= .+.+.+++....+ |+|+|-++
T Consensus 173 ~~~~~-----~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig 223 (318)
T TIGR00742 173 KENRE-----IPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG 223 (318)
T ss_pred ccccc-----CCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 00000 1224588999999887 8998743 4688999988875 99999763
No 419
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.37 E-value=1.8 Score=40.66 Aligned_cols=86 Identities=22% Similarity=0.285 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccC-Cc
Q 021614 73 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID-RS 151 (310)
Q Consensus 73 ~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 151 (310)
.+.+...++++.+++.|++.+.|+.+.... |. .. + ....+... +.
T Consensus 233 ~~~eea~~ia~~Le~~Gvd~iev~~g~~~~-------------~~-~~-~-------------------~~~~~~~~~~~ 278 (338)
T cd04733 233 FTEEDALEVVEALEEAGVDLVELSGGTYES-------------PA-MA-G-------------------AKKESTIAREA 278 (338)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCCC-------------cc-cc-c-------------------cccCCccccch
Confidence 466777788888888888888876653211 00 00 0 00000001 12
Q ss_pred ccHHHHHHHHhhCCCCEEEEecC-CHHHHHHHHHcC-CcEEEE
Q 021614 152 LSWKDVKWLQTITKLPILVKGVL-TAEDARIAVQAG-AAGIIV 192 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK~~~-~~~~a~~~~~aG-ad~I~v 192 (310)
..++..+++|+.+++||++-+.. +++++..+++.| +|.|-+
T Consensus 279 ~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 279 YFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred hhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeee
Confidence 23577889999999999887764 799999888876 898865
No 420
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=92.37 E-value=4.8 Score=37.10 Aligned_cols=110 Identities=24% Similarity=0.288 Sum_probs=72.1
Q ss_pred CHHHHHHH-HHcCCcEEEEecCCCCCCCCC--cc--hHHHHHHHHHHhcCCceEEEecCCCCHH-HHHHHHHcCCCEEEE
Q 021614 175 TAEDARIA-VQAGAAGIIVSNHGARQLDYV--PA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFI 248 (310)
Q Consensus 175 ~~~~a~~~-~~aGad~I~v~~~gg~~~~~~--~~--~~~~l~~i~~~~~~~ipvia~GGI~~~~-dv~k~l~~GAd~V~i 248 (310)
++++|+.. .+.|+|.+.++-..-+..+.+ .+ .++.|.++.+.+. ++|+..=||=..+. ++.+++.+|..-|-+
T Consensus 156 dP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 234 (287)
T PF01116_consen 156 DPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKINI 234 (287)
T ss_dssp SHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEEEE
Confidence 57887665 589999999875322222222 23 4777888887763 69999988765555 788999999999999
Q ss_pred cHHHHHHhhh-------cc------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021614 249 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 249 g~~~l~~~~~-------~G------~~~v~~~l~~l~~~l~~~m~~~G~~ 285 (310)
++.+..+... .. ..-.....+.+.+.++..|..+|..
T Consensus 235 ~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 235 GTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977654211 00 1123344456677777778877764
No 421
>PRK12346 transaldolase A; Provisional
Probab=92.25 E-value=2 Score=40.05 Aligned_cols=100 Identities=13% Similarity=0.235 Sum_probs=65.0
Q ss_pred cHHHHHHHHhh--CCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCC-------------CcchHHHHHHHHHHh
Q 021614 153 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 217 (310)
Q Consensus 153 ~~~~i~~ir~~--~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~ 217 (310)
+|+=++.++.. -++++-+=.+++.+.+..+.++|+++|...- ||-.++ +-+.+..+.++.+..
T Consensus 135 T~eGi~A~~~L~~~GI~~n~TliFS~~Qa~~aa~AGa~~ISPfV--gRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 212 (316)
T PRK12346 135 TWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPFV--GRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY 212 (316)
T ss_pred CHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEecc--cHHHHhhhhccccccccccCCChHHHHHHHHHHH
Confidence 45555555443 2677766667899999999999999986543 221111 223444555554433
Q ss_pred ---cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhh
Q 021614 218 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 257 (310)
Q Consensus 218 ---~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~ 257 (310)
..+. .+....+||..++. ..+|+|.+-+.-.++..+.
T Consensus 213 k~~~~~T-~Vm~ASfRn~~qi~--alaG~d~lTi~p~ll~~L~ 252 (316)
T PRK12346 213 KQHRYET-IVMGASFRRTEQIL--ALAGCDRLTISPNLLKELQ 252 (316)
T ss_pred HHcCCCc-EEEecccCCHHHHH--HHhCCCEEeCCHHHHHHHH
Confidence 2233 44446699999997 3469999999988887654
No 422
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=92.19 E-value=7.5 Score=34.01 Aligned_cols=89 Identities=20% Similarity=0.245 Sum_probs=54.6
Q ss_pred HHHHHHHhhCCCCEEEEecC-CHHHHHHHH--HcCCcEEEEecC----CCCCCCCCcchHHHHHHHHHHhcCCceEEEec
Q 021614 155 KDVKWLQTITKLPILVKGVL-TAEDARIAV--QAGAAGIIVSNH----GARQLDYVPATIMALEEVVKATQGRIPVFLDG 227 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~-~~~~a~~~~--~aGad~I~v~~~----gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (310)
+.++.+|+..+++++--... +.++...+. ...+|++.+... ||+. ..-.|..+. +.+ ..|++..|
T Consensus 90 ~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG---~~~dw~~l~---~~~--~~p~~LAG 161 (210)
T PRK01222 90 EFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTG---KTFDWSLLP---AGL--AKPWILAG 161 (210)
T ss_pred HHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCC---CccchHHhh---hcc--CCCEEEEC
Confidence 45777777667776632222 222333322 236899988753 2221 122344441 122 46999999
Q ss_pred CCCCHHHHHHHHHc-CCCEEEEcHHH
Q 021614 228 GVRRGTDVFKALAL-GASGIFIGRPV 252 (310)
Q Consensus 228 GI~~~~dv~k~l~~-GAd~V~ig~~~ 252 (310)
||. ++++.+++.. +..+|=+.|.+
T Consensus 162 Gi~-peNv~~ai~~~~p~gvDvsSgv 186 (210)
T PRK01222 162 GLN-PDNVAEAIRQVRPYGVDVSSGV 186 (210)
T ss_pred CCC-HHHHHHHHHhcCCCEEEecCce
Confidence 998 8999999984 88888887755
No 423
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=92.18 E-value=1.8 Score=41.41 Aligned_cols=104 Identities=15% Similarity=0.088 Sum_probs=60.8
Q ss_pred cccHHHHHHHHhhCC--CCEEEEec--------CCH----HHHHHHHHcCCcEEEEecCCCCC-------CCCCcchH--
Q 021614 151 SLSWKDVKWLQTITK--LPILVKGV--------LTA----EDARIAVQAGAAGIIVSNHGARQ-------LDYVPATI-- 207 (310)
Q Consensus 151 ~~~~~~i~~ir~~~~--~pv~vK~~--------~~~----~~a~~~~~aGad~I~v~~~gg~~-------~~~~~~~~-- 207 (310)
.+..|++..||+..+ .+.+...- .+. ..+....+-|.|.+-+++..... ...-+...
T Consensus 225 Rf~lEv~daVr~~Ip~s~~~l~~~~~~~fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~ 304 (400)
T KOG0134|consen 225 RFPLEVVDAVRKEIPASRVFLRGSPTNEFQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAF 304 (400)
T ss_pred hhhHHHHHHHHHhhccccceEEecCchhhhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccc
Confidence 356899999999862 22222111 122 33566778899977765421100 00001111
Q ss_pred --HHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcC-CCEEEEcHHHHHH
Q 021614 208 --MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVYS 255 (310)
Q Consensus 208 --~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~V~ig~~~l~~ 255 (310)
+.-..++... ...-|-+.||.++.+.+.+++..| .|+|+.||+|+..
T Consensus 305 ~~~f~e~~r~~~-kgt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~an 354 (400)
T KOG0134|consen 305 FVEFAETIRPVF-KGTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLAN 354 (400)
T ss_pred hhhhhhHHHHHh-cCcEEEecCCccCHHHHHHHHhcCCceeEEecchhccC
Confidence 1112233333 133456667899999999999998 5699999999763
No 424
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=92.11 E-value=6.6 Score=37.84 Aligned_cols=88 Identities=19% Similarity=0.205 Sum_probs=57.8
Q ss_pred HHHHHHHHhh-CCCCEEEE--ecCCHHH-HHHHHHcCCcEEEEecCCCCCCCCCcchHHH-HHHHHHHhcCCceEEE-ec
Q 021614 154 WKDVKWLQTI-TKLPILVK--GVLTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMA-LEEVVKATQGRIPVFL-DG 227 (310)
Q Consensus 154 ~~~i~~ir~~-~~~pv~vK--~~~~~~~-a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~-l~~i~~~~~~~ipvia-~G 227 (310)
.+.++++++. .+.+|.+= ..-.++. ++.+.++|+|.++++..++ ..+... +..++ .. .+.+.. .=
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~------~~ti~~ai~~ak-k~--GikvgVD~l 284 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAP------ISTIEKAIHEAQ-KT--GIYSILDML 284 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccCC------HHHHHHHHHHHH-Hc--CCEEEEEEc
Confidence 3678899887 56676643 3322333 7889999999999986432 122322 23332 22 455555 55
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcH
Q 021614 228 GVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 228 GI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
+..++.+.++.+..+.|.|.+.+
T Consensus 285 np~tp~e~i~~l~~~vD~Vllht 307 (391)
T PRK13307 285 NVEDPVKLLESLKVKPDVVELHR 307 (391)
T ss_pred CCCCHHHHHHHhhCCCCEEEEcc
Confidence 67788888888888999999886
No 425
>PLN02826 dihydroorotate dehydrogenase
Probab=92.08 E-value=0.92 Score=43.94 Aligned_cols=106 Identities=19% Similarity=0.230 Sum_probs=65.4
Q ss_pred CceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHH
Q 021614 63 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 142 (310)
Q Consensus 63 ~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (310)
.|.++.+-+..+.+.+.++++.+.+.|+++|.++=.+.. |..|+... +.... .+
T Consensus 263 ~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~---r~~dl~~~---~~~~~-----------------~G--- 316 (409)
T PLN02826 263 PPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTIS---RPDSVLGH---PHADE-----------------AG--- 316 (409)
T ss_pred CceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCc---Cccchhcc---ccccc-----------------CC---
Confidence 367778876666667888888899999999876311111 11011000 00000 00
Q ss_pred HhhhccCCcccHHHHHHHHhhC--CCCEE-EEecCCHHHHHHHHHcCCcEEEEec
Q 021614 143 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 143 ~~~~~~~~~~~~~~i~~ir~~~--~~pv~-vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
-+++..-.+.+.+.++++++.. ++||+ +.++.+.+++...+.+||+.|.+..
T Consensus 317 GlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~T 371 (409)
T PLN02826 317 GLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYT 371 (409)
T ss_pred CcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecH
Confidence 0111111234567888888877 68876 5567899999999999999998753
No 426
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=92.04 E-value=1.4 Score=41.50 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=34.5
Q ss_pred ccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcC-CcEEEE
Q 021614 152 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIV 192 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aG-ad~I~v 192 (310)
..++..+.+|+.+++||++=+..+++++..+++.| +|.|-+
T Consensus 272 ~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 272 QPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAF 313 (338)
T ss_pred cchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEe
Confidence 34678899999999999988777799999988876 999965
No 427
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=91.97 E-value=1.1 Score=37.97 Aligned_cols=117 Identities=24% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHH
Q 021614 80 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKW 159 (310)
Q Consensus 80 ~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (310)
+..+-++++|+-+++.-=-.|. |+|.. .|.++.-.| +.|++
T Consensus 25 eQAkIAE~AGA~AVMaLervPa------diR~~-------------------------GGVaRMsDP--------~~I~e 65 (208)
T PF01680_consen 25 EQAKIAEEAGAVAVMALERVPA------DIRAA-------------------------GGVARMSDP--------KMIKE 65 (208)
T ss_dssp HHHHHHHHHT-SEEEE-SS-HH------HHHHT-------------------------TS---S--H--------HHHHH
T ss_pred HHHHHHHHhCCeEEEEeccCCH------hHHhc-------------------------CCccccCCH--------HHHHH
Q ss_pred HHhhCCCCEEEEecCC-HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHH
Q 021614 160 LQTITKLPILVKGVLT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 238 (310)
Q Consensus 160 ir~~~~~pv~vK~~~~-~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~ 238 (310)
+.+.+.+||..|.... .-+|+.+...|+|+|.=|- .....+.-.-+-+... ++|++. |-++..+++.-
T Consensus 66 I~~aVsIPVMAK~RIGHfvEAqiLealgVD~IDESE--------VLTpAD~~~HI~K~~F-~vPFVc--GarnLGEALRR 134 (208)
T PF01680_consen 66 IMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESE--------VLTPADEENHIDKHNF-KVPFVC--GARNLGEALRR 134 (208)
T ss_dssp HHHH-SSEEEEEEETT-HHHHHHHHHTT-SEEEEET--------TS--S-SS----GGG--SS-EEE--EESSHHHHHHH
T ss_pred HHHheEeceeeccccceeehhhhHHHhCCceecccc--------ccccccccccccchhC-CCCeEe--cCCCHHHHHhh
Q ss_pred HHcCCCEE
Q 021614 239 LALGASGI 246 (310)
Q Consensus 239 l~~GAd~V 246 (310)
+..||..+
T Consensus 135 I~EGAaMI 142 (208)
T PF01680_consen 135 IAEGAAMI 142 (208)
T ss_dssp HHTT-SEE
T ss_pred HHhhhhhh
No 428
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=91.86 E-value=1.8 Score=38.88 Aligned_cols=97 Identities=20% Similarity=0.262 Sum_probs=54.6
Q ss_pred HHHHHHHhhCCCCEEEEecC---CH----HHHHHHHHcCCcEEEEecCC-----CC-CCCCCcchHHH---HHHHHHHhc
Q 021614 155 KDVKWLQTITKLPILVKGVL---TA----EDARIAVQAGAAGIIVSNHG-----AR-QLDYVPATIMA---LEEVVKATQ 218 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~---~~----~~a~~~~~aGad~I~v~~~g-----g~-~~~~~~~~~~~---l~~i~~~~~ 218 (310)
+.++.|.+..++||++=+-. +. +.++.+.++|+++|.+-... |+ ......+.-+. +..++++..
T Consensus 59 ~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~ 138 (243)
T cd00377 59 AAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD 138 (243)
T ss_pred HHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh
Confidence 44677777778998876543 33 33677889999999993311 10 00011122223 333333333
Q ss_pred C--CceEEEe--------cCCCCHHHHHH-HHHcCCCEEEEcHH
Q 021614 219 G--RIPVFLD--------GGVRRGTDVFK-ALALGASGIFIGRP 251 (310)
Q Consensus 219 ~--~ipvia~--------GGI~~~~dv~k-~l~~GAd~V~ig~~ 251 (310)
. +++|++- .|+...-.-.+ +.++|||++++-.+
T Consensus 139 ~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 139 DLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred ccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 3 6888886 23333333333 44589999998654
No 429
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=91.86 E-value=2.2 Score=40.40 Aligned_cols=83 Identities=23% Similarity=0.320 Sum_probs=57.6
Q ss_pred CCCEEEEecC------CHHHHHHHHHcCCcEEEEecCC---CC---------CCC-------------------------
Q 021614 165 KLPILVKGVL------TAEDARIAVQAGAAGIIVSNHG---AR---------QLD------------------------- 201 (310)
Q Consensus 165 ~~pv~vK~~~------~~~~a~~~~~aGad~I~v~~~g---g~---------~~~------------------------- 201 (310)
+.|+++-... +.+..+++.++|+++|+++... |+ +..
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI 196 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence 3677765432 2455788999999999997421 10 000
Q ss_pred CCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 202 YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 202 ~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
....+|+.+.++++.. ++||++- ||.+.+|+.++..+|+|++.+..
T Consensus 197 ~~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 197 DPTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 0113466677776654 6899887 78899999999999999999865
No 430
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=91.80 E-value=1.9 Score=39.76 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=57.2
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCC---C-CCCCcchHHH----HHHHHHHhcCCceEEEec--CCCCHHH
Q 021614 165 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR---Q-LDYVPATIMA----LEEVVKATQGRIPVFLDG--GVRRGTD 234 (310)
Q Consensus 165 ~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~---~-~~~~~~~~~~----l~~i~~~~~~~ipvia~G--GI~~~~d 234 (310)
+.|+++-++.+.-.|+.+.++|.+++.+++++-. . .|.+.-++.. +.++.+.+ ++||+++. |..++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 4588888888888899999999999999875411 1 1222223332 23333333 79999986 7778888
Q ss_pred H----HHHHHcCCCEEEEcH
Q 021614 235 V----FKALALGASGIFIGR 250 (310)
Q Consensus 235 v----~k~l~~GAd~V~ig~ 250 (310)
+ .+...+||.++.|--
T Consensus 90 v~~tv~~~~~aG~agi~IED 109 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIED 109 (285)
T ss_pred HHHHHHHHHHcCCeEEEEec
Confidence 5 355568998888843
No 431
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=91.80 E-value=10 Score=34.67 Aligned_cols=183 Identities=16% Similarity=0.134 Sum_probs=102.1
Q ss_pred cceeeccccccccCCCHHHHHHHHHHHHcCCeeEe--CCCC---CCCHHHHH-------ccCCC--ceeEEEEecCChHH
Q 021614 12 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SSWS---TSSVEEVA-------STGPG--IRFFQLYVYKDRNV 77 (310)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~--~~~~---~~~~e~i~-------~~~~~--~~~~ql~~~~d~~~ 77 (310)
.|.++-|+.-.+-.+.++-..+.+-+.+.|+...+ ++.+ ..+.+|.. +...+ +.+++.. ..+.+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHH
Confidence 35667777433334444445566667777866443 3322 34444422 22122 4555654 346677
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHH
Q 021614 78 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 157 (310)
Q Consensus 78 ~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 157 (310)
..++++.+++.|++++.+.. |... + . +.+-..+..
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p--P~y~------------~---------------------~----------~~~~i~~~~ 116 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT--PYYN------------K---------------------P----------TQEGLYQHF 116 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC--CcCC------------C---------------------C----------CHHHHHHHH
Confidence 88888999999999998732 2210 0 0 001113456
Q ss_pred HHHHhhCCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCC
Q 021614 158 KWLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 229 (310)
Q Consensus 158 ~~ir~~~~~pv~vK~~-------~~~~~a~~~~~aG-ad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (310)
+.+.+.+++||++=.. .+++..+++.+.. +-+|+-+ . .....+.++.+..+.++.++...
T Consensus 117 ~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s---------~-~d~~~~~~l~~~~~~~~~v~~G~-- 184 (285)
T TIGR00674 117 KAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEA---------T-GNLERISEIKAIAPDDFVVLSGD-- 184 (285)
T ss_pred HHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeC---------C-CCHHHHHHHHHhcCCCeEEEECc--
Confidence 7777777889886432 4677777777643 1222211 1 12334444544444455555522
Q ss_pred CCHHHHHHHHHcCCCEEEEcHHHHH
Q 021614 230 RRGTDVFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 230 ~~~~dv~k~l~~GAd~V~ig~~~l~ 254 (310)
...+...+.+|+++.+.|...++
T Consensus 185 --d~~~~~~~~~G~~G~i~~~~~~~ 207 (285)
T TIGR00674 185 --DALTLPMMALGGKGVISVTANVA 207 (285)
T ss_pred --hHHHHHHHHcCCCEEEehHHHhh
Confidence 24566788999999998876543
No 432
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=91.72 E-value=11 Score=34.79 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=104.1
Q ss_pred cceeeccccccccCCCHHHHHHHHHHHHcCCeeE--eCCC---CCCCHHHHH-------ccCCC--ceeEEEEecCChHH
Q 021614 12 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSSW---STSSVEEVA-------STGPG--IRFFQLYVYKDRNV 77 (310)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~--~~~~---~~~~~e~i~-------~~~~~--~~~~ql~~~~d~~~ 77 (310)
.|.++.|+.-.+-.+.++-..+.+-..+.|+... .++. .+.+.+|.. +...+ +.+.+.. ..+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~-~~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG-ALNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC-cchHHH
Confidence 4777888854433445455567777777886543 2332 345555432 11122 4455554 356777
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHH
Q 021614 78 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 157 (310)
Q Consensus 78 ~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 157 (310)
..++.+.+++.|++++.+. .|.. + + .. + +-..+..
T Consensus 84 ai~~a~~A~~~Gad~v~v~--pP~y----------~--~---------------------~~-~---------~~l~~~f 118 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVI--VPYY----------N--K---------------------PN-Q---------EALYDHF 118 (294)
T ss_pred HHHHHHHHHHcCCCEEEEc--CccC----------C--C---------------------CC-H---------HHHHHHH
Confidence 7888899999999998873 2221 0 0 00 0 1113557
Q ss_pred HHHHhhC-CCCEEEEec-------CCHHHHHHHHH--cCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEec
Q 021614 158 KWLQTIT-KLPILVKGV-------LTAEDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 227 (310)
Q Consensus 158 ~~ir~~~-~~pv~vK~~-------~~~~~a~~~~~--aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (310)
+.+.+.+ ++||++=.. ++++...++.+ -.+-+|+-+. ..+..+.++.+....++.|+. |
T Consensus 119 ~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss----------~d~~~~~~~~~~~~~~~~v~~-G 187 (294)
T TIGR02313 119 AEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKESN----------KDFEHLNHLFLEAGRDFLLFC-G 187 (294)
T ss_pred HHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-c
Confidence 7777778 799886542 45777777764 3344444321 123334444433333555544 3
Q ss_pred CCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 228 GVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 228 GI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
+...+..++.+||++++.|..-+
T Consensus 188 ---~d~~~~~~l~~Ga~G~is~~~n~ 210 (294)
T TIGR02313 188 ---IELLCLPMLAIGAAGSIAATANV 210 (294)
T ss_pred ---chHHHHHHHHCCCCEEEecHHhh
Confidence 23556678899999999888543
No 433
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=91.71 E-value=0.46 Score=46.61 Aligned_cols=66 Identities=21% Similarity=0.192 Sum_probs=43.8
Q ss_pred ecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 021614 172 GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 248 (310)
Q Consensus 172 ~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~i 248 (310)
++.++++++.+.+ |+|++.|+..--+ .+.....+.++.. ..+.| -|+++.+|+..+..+|||++++
T Consensus 218 GI~t~~d~~~~~~-~~davLiG~~lm~----~~d~~~~~~~L~~---~~vKI---CGit~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 218 GIYTHAQVRELSP-FANGFLIGSSLMA----EDDLELAVRKLIL---GENKV---CGLTRPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred CCCCHHHHHHHHh-cCCEEEECHHHcC----CCCHHHHHHHHhc---ccccc---CCCCCHHHHHHHHhCCCCEEee
Confidence 4578999988865 7999987542111 1122233333321 12333 4799999999999999999998
No 434
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=91.68 E-value=11 Score=34.75 Aligned_cols=184 Identities=15% Similarity=0.073 Sum_probs=104.9
Q ss_pred cceeeccccccccCCCHHHHHHHHHHHHcCCeeEe--CCCC---CCCHHHHH-------ccCCC--ceeEEEEecCChHH
Q 021614 12 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SSWS---TSSVEEVA-------STGPG--IRFFQLYVYKDRNV 77 (310)
Q Consensus 12 ~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~--~~~~---~~~~e~i~-------~~~~~--~~~~ql~~~~d~~~ 77 (310)
.|.++-|+.-.+-.+.++-..+.+-..+.|+...+ ++.+ ..+.+|.. +...+ +.+++.. .+.+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 46677888543334555556677778888866443 3332 34555422 22222 5666764 35788
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHH
Q 021614 78 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 157 (310)
Q Consensus 78 ~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 157 (310)
..++++.+++.|++++.+. .|... + . . .+ -..+..
T Consensus 88 ai~~a~~a~~~Gadav~~~--pP~y~------------~--~-------------------s-~~---------~i~~~f 122 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLL--PPYLI------------N--G-------------------E-QE---------GLYAHV 122 (296)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCCC------------C--C-------------------C-HH---------HHHHHH
Confidence 8888899999999998772 22210 0 0 0 00 112456
Q ss_pred HHHHhhCCCCEEEEe----cCCHHHHHHHHHc--CCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCC
Q 021614 158 KWLQTITKLPILVKG----VLTAEDARIAVQA--GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 231 (310)
Q Consensus 158 ~~ir~~~~~pv~vK~----~~~~~~a~~~~~a--Gad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~ 231 (310)
+.+.+.+++||++=. .++++...++.+. .+-+|+-+. .++..+.++.+..++++.|+...+. .
T Consensus 123 ~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKds~----------~d~~~~~~~~~~~~~~~~v~~G~~~-~ 191 (296)
T TIGR03249 123 EAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKDGI----------GDMEQMIEITQRLGDRLGYLGGMPT-A 191 (296)
T ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEEeCCCc-c
Confidence 677777789987633 2467877777652 444554321 1344444444444445544442211 1
Q ss_pred HHHHHHHHHcCCCEEEEcHHHH
Q 021614 232 GTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 232 ~~dv~k~l~~GAd~V~ig~~~l 253 (310)
...+...+.+||++++.|..-+
T Consensus 192 d~~~~~~~~~Ga~G~is~~~n~ 213 (296)
T TIGR03249 192 EVTAPAYLPLGVTSYSSAIFNF 213 (296)
T ss_pred hhhHHHHHhCCCCEEEecHHHh
Confidence 3345677889999999887543
No 435
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=91.65 E-value=1.7 Score=38.40 Aligned_cols=42 Identities=12% Similarity=0.315 Sum_probs=33.7
Q ss_pred cHHHHHHHHhhC-----CCCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021614 153 SWKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 153 ~~~~i~~ir~~~-----~~pv~vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
..+.++++++.. ++|+.+-+..+.+.+..+.++|||.++++.
T Consensus 150 ~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGS 196 (220)
T PRK08883 150 TLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGS 196 (220)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeH
Confidence 456677777654 378888787889999999999999998753
No 436
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=91.65 E-value=1.4 Score=42.11 Aligned_cols=93 Identities=22% Similarity=0.335 Sum_probs=61.9
Q ss_pred cHHHHHHHHhhCCCCEEEEecC------CHHHHHHHHHcCCcEEEEecC----CCCC-----------------------
Q 021614 153 SWKDVKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSNH----GARQ----------------------- 199 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~~------~~~~a~~~~~aGad~I~v~~~----gg~~----------------------- 199 (310)
++|.|.+.. .+-|.+.-... +.+..+++.++|+++|+++.- |.|.
T Consensus 122 slEev~~~~--~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~ 199 (367)
T TIGR02708 122 DLPEISEAL--NGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTG 199 (367)
T ss_pred CHHHHHhhc--CCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccC
Confidence 455554321 24566665542 345678999999999998641 1000
Q ss_pred ----CC------CCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 200 ----LD------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 200 ----~~------~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
.. ....+|+.+.++++.. ++||++= ||.+.+|+.++..+|+|+|.++.
T Consensus 200 ~~~~~~~~~~~~~~~~~w~~i~~l~~~~--~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 200 AGKSMDNVYKSAKQKLSPRDIEEIAGYS--GLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred CccchhhhccccCCCCCHHHHHHHHHhc--CCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 00 0123466777777665 6899976 69999999999999999998764
No 437
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.65 E-value=3.4 Score=35.62 Aligned_cols=89 Identities=24% Similarity=0.141 Sum_probs=54.5
Q ss_pred HHHHHHHHhhC-CCCEEEEe-cCCHH--HHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEe-cC
Q 021614 154 WKDVKWLQTIT-KLPILVKG-VLTAE--DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD-GG 228 (310)
Q Consensus 154 ~~~i~~ir~~~-~~pv~vK~-~~~~~--~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~-GG 228 (310)
.+.++.+|+.. +..+++-. ..++. +++.+.++|+|+|.++... .......+.+..+.. .++++.. -+
T Consensus 40 ~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~------~~~~~~~~i~~~~~~--g~~~~~~~~~ 111 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA------DDATIKGAVKAAKKH--GKEVQVDLIN 111 (206)
T ss_pred HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC------CHHHHHHHHHHHHHc--CCEEEEEecC
Confidence 36788888874 44555332 23443 6899999999999876421 111222222222222 6787765 34
Q ss_pred CCCH-HHHHHHHHcCCCEEEEcH
Q 021614 229 VRRG-TDVFKALALGASGIFIGR 250 (310)
Q Consensus 229 I~~~-~dv~k~l~~GAd~V~ig~ 250 (310)
..+. +++..+..+|+|.|.+..
T Consensus 112 ~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 112 VKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred CCChHHHHHHHHHcCCCEEEEcC
Confidence 4443 677778888999998853
No 438
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=91.57 E-value=0.54 Score=41.64 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=37.8
Q ss_pred ccHHHHHHHHhhC-CCCEEEEe-cCCHHHHHHHHHcCCcEEEEec
Q 021614 152 LSWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 152 ~~~~~i~~ir~~~-~~pv~vK~-~~~~~~a~~~~~aGad~I~v~~ 194 (310)
...+.++.+++.. +.|+.+.+ +.+.++++.+.++|||.|++++
T Consensus 165 v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence 4578999999988 89999886 4789999999999999999865
No 439
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=91.52 E-value=1.4 Score=42.23 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 206 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 206 ~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
+|+.+..+++.. ++||+.- ||.+.+|+.+++.+|+|++.+..
T Consensus 241 tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 241 TWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred CHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEcC
Confidence 456666666554 6898885 78999999999999999999863
No 440
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=91.35 E-value=6.1 Score=32.87 Aligned_cols=94 Identities=19% Similarity=0.156 Sum_probs=57.2
Q ss_pred HHHHHHHhhCCCCEEEEecC-CHHH-----HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecC
Q 021614 155 KDVKWLQTITKLPILVKGVL-TAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 228 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~-~~~~-----a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (310)
+.++.+++..+.|+++.... +... ++.+.++|+|+|.+....+.. .....+.+.++++.+ .+++++..-.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~---~~~~~~~~~~i~~~~-~~~~v~~~~~ 122 (200)
T cd04722 47 EVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL---AREDLELIRELREAV-PDVKVVVKLS 122 (200)
T ss_pred cHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH---HHHHHHHHHHHHHhc-CCceEEEEEC
Confidence 44667777778998887752 2222 468999999999987642210 001234455555544 3577777655
Q ss_pred CCCHHHHHHHHHcCCCEEEEcHHH
Q 021614 229 VRRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 229 I~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
.....+.......|+|.+.+...+
T Consensus 123 ~~~~~~~~~~~~~g~d~i~~~~~~ 146 (200)
T cd04722 123 PTGELAAAAAEEAGVDEVGLGNGG 146 (200)
T ss_pred CCCccchhhHHHcCCCEEEEcCCc
Confidence 443333222466899999987643
No 441
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.33 E-value=12 Score=34.62 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=43.5
Q ss_pred HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEE---EecCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Q 021614 179 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRGTDVFKALALGASGIFIGRPVVYS 255 (310)
Q Consensus 179 a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi---a~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~ 255 (310)
++...++|||.|.+.+ +.+.+.+.++.+.+ +.|++ ..+|-.-..++.+.-++|...|..|...+..
T Consensus 172 a~aY~eAGAD~ifi~~---------~~~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 172 AQAYVEAGADMIFPEA---------MTELEMYRRFADAV--KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred HHHHHHcCCCEEEecC---------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 5778899999998743 33466667776666 56763 3344221123445556899999999877664
No 442
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=91.29 E-value=7.5 Score=35.76 Aligned_cols=110 Identities=20% Similarity=0.229 Sum_probs=70.0
Q ss_pred CCHHHHHHHH-HcCCcEEEEecCCCCCCCCCc--chHHHHHHHHHHhcCCceEEEecCCCC-HHHHHHHHHcCCCEEEEc
Q 021614 174 LTAEDARIAV-QAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIG 249 (310)
Q Consensus 174 ~~~~~a~~~~-~aGad~I~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvia~GGI~~-~~dv~k~l~~GAd~V~ig 249 (310)
.+++++.... +.|+|.+-++...-+..+.+. -.++.|.++++.+ ++|+..=||=.. .+++.+++.+|..-|-++
T Consensus 155 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKVNID 232 (284)
T ss_pred CCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 3578877654 679999998753222222222 3577888888876 789888775443 466778999999999999
Q ss_pred HHHHHHhhh-------cc------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021614 250 RPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 250 ~~~l~~~~~-------~G------~~~v~~~l~~l~~~l~~~m~~~G~~ 285 (310)
+-+..+... .. ..-.....+.+++..+..|+.+|..
T Consensus 233 T~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 233 TNIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred cHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 977543210 00 0113333455666666667666653
No 443
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=91.27 E-value=3.4 Score=38.59 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=40.8
Q ss_pred Cce-EEEecCCCCHHHHHH----HHHcCCC--EEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcc
Q 021614 220 RIP-VFLDGGVRRGTDVFK----ALALGAS--GIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 292 (310)
Q Consensus 220 ~ip-via~GGI~~~~dv~k----~l~~GAd--~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~ 292 (310)
.+| |+.|+|+.. +...+ |..+||+ +|..||+.-+. ++.-++..=.+..+.+|...|.++|++|..
T Consensus 242 ~~P~i~LSaGV~~-~~F~~~l~~A~~aGa~fnGvL~GRAtW~~-------~v~~~~~~g~~a~~~wL~t~g~~ni~~Ln~ 313 (329)
T PRK04161 242 HLPYIYLSAGVSA-KLFQETLVFAAEAGAQFNGVLCGRATWAG-------SVPVYITEGEEAARKWLCTEGFQNIDELNR 313 (329)
T ss_pred CCCEEEEcCCCCH-HHHHHHHHHHHhcCCCcccEEeehhhhhh-------hhhhhhcCCHHHHHHHHHHHhHHHHHHHHH
Confidence 677 888899874 43333 4447998 99999986442 122222222345566677777777777654
Q ss_pred c
Q 021614 293 D 293 (310)
Q Consensus 293 ~ 293 (310)
-
T Consensus 314 v 314 (329)
T PRK04161 314 V 314 (329)
T ss_pred H
Confidence 3
No 444
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=91.26 E-value=3.1 Score=38.84 Aligned_cols=100 Identities=12% Similarity=0.187 Sum_probs=65.4
Q ss_pred cHHHHHHHHhh--CCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCC-------------CcchHHHHHHHHHHh
Q 021614 153 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 217 (310)
Q Consensus 153 ~~~~i~~ir~~--~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~ 217 (310)
+|+=++.++.. -++++-+=.+++.+.+..+.++|+++|...- ||-.++ ..+.+..+.++.+..
T Consensus 134 T~eGi~A~~~L~~~GI~vN~TliFS~~Qa~aaa~AGa~~ISPFV--gRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~ 211 (317)
T TIGR00874 134 TWEGIRAAEELEKEGIHCNLTLLFSFVQAIACAEAKVTLISPFV--GRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY 211 (317)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeec--chHhHhhhhccCccccccccCchHHHHHHHHHHH
Confidence 34445444443 2677777678899999999999999987653 221110 123444555554433
Q ss_pred ---cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhh
Q 021614 218 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 257 (310)
Q Consensus 218 ---~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~ 257 (310)
..+..|+ ...+||..++.+ .+|||.+-+.-.++..+.
T Consensus 212 k~~g~~T~Im-~ASfRn~~qv~~--laG~d~~Ti~p~ll~~L~ 251 (317)
T TIGR00874 212 KKHGYPTEVM-GASFRNKEEILA--LAGCDRLTISPALLDELK 251 (317)
T ss_pred HHcCCCcEEE-eeccCCHHHHHH--HHCCCeEeCCHHHHHHHH
Confidence 2244444 567999999987 579999999988877653
No 445
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=91.15 E-value=4.6 Score=36.61 Aligned_cols=97 Identities=25% Similarity=0.339 Sum_probs=60.4
Q ss_pred HHHHHHHHhhCCCCEEEEec-C-CHHH----HHHHHHcCCcEEEEecCCCCCCCC---CcchHHHHHHHHHHhcCCceEE
Q 021614 154 WKDVKWLQTITKLPILVKGV-L-TAED----ARIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPVF 224 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~-~-~~~~----a~~~~~aGad~I~v~~~gg~~~~~---~~~~~~~l~~i~~~~~~~ipvi 224 (310)
.+.++.+. ..++||++|.. . +.++ +..+.+.|.+-|.+--+|-+.... ....+..+..+++.. .+||+
T Consensus 122 ~~LL~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV~ 198 (260)
T TIGR01361 122 FELLKEVG-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPII 198 (260)
T ss_pred HHHHHHHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCEE
Confidence 35566664 46899999976 3 6665 355667898767664443222211 124566666666544 68999
Q ss_pred Ee-c---CCCC--HHHHHHHHHcCCCEEEEcHHHH
Q 021614 225 LD-G---GVRR--GTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 225 a~-G---GI~~--~~dv~k~l~~GAd~V~ig~~~l 253 (310)
.+ + |.+. ..-...++++||+++++-+-+-
T Consensus 199 ~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t 233 (260)
T TIGR01361 199 VDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPD 233 (260)
T ss_pred EcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 93 3 3222 3344468889999999988653
No 446
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=91.13 E-value=2.5 Score=40.68 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=63.9
Q ss_pred cHHHHHHHHhh--CCCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCC-------------CcchHHHHHHHHHHh
Q 021614 153 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 217 (310)
Q Consensus 153 ~~~~i~~ir~~--~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~ 217 (310)
+|+=++.++.. -++++-+=.+++.+.|..+.++|+++|...- ||-.+| .-+.+..+.++.+..
T Consensus 140 T~eGi~A~~~L~~~GI~~n~TlvFS~~QA~aaaeAGa~~ISPfV--gRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~ 217 (391)
T PRK12309 140 TWEGIKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPFV--GRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY 217 (391)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeec--chhhhhhhhccCCCccccccchHHHHHHHHHHHH
Confidence 34555555443 2677766667899999999999999887643 221110 112344455554443
Q ss_pred c---CCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHh
Q 021614 218 Q---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 256 (310)
Q Consensus 218 ~---~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~ 256 (310)
+ .+..|++ ..+|+..++.+ .+|||.+-+.-.++..+
T Consensus 218 ~~~~~~T~Im~-ASfRn~~~v~~--laG~d~~Ti~p~ll~~L 256 (391)
T PRK12309 218 KKFGYKTEVMG-ASFRNIGEIIE--LAGCDLLTISPKLLEQL 256 (391)
T ss_pred HhcCCCcEEEe-cccCCHHHHHH--HHCCCeeeCCHHHHHHH
Confidence 2 2344544 56899999987 47999999998777654
No 447
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=91.11 E-value=12 Score=34.05 Aligned_cols=186 Identities=22% Similarity=0.298 Sum_probs=0.0
Q ss_pred eeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHccCCCceeEEEEecCChHHHHHHHHHHHHcCCcEE
Q 021614 14 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAI 93 (310)
Q Consensus 14 i~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i 93 (310)
++.+|.+.. +.+--...|+...+.|+-+.-+.-- +-+-.++-|| +.+.+-+.-+-+..++.|-..+
T Consensus 48 viAGPCsvE---s~E~i~~~A~~vk~~Ga~~lRGgaf--------KPRTSPYsFQ---Glge~gL~~l~~a~~~~Gl~vv 113 (286)
T COG2876 48 VIAGPCSVE---SEEQVRETAESVKAAGAKALRGGAF--------KPRTSPYSFQ---GLGEEGLKLLKRAADETGLPVV 113 (286)
T ss_pred EEecCcccC---CHHHHHHHHHHHHHcchhhccCCcC--------CCCCCccccc---ccCHHHHHHHHHHHHHcCCeeE
Q ss_pred EEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHHHHHhhCCCCEEEEec
Q 021614 94 ALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV 173 (310)
Q Consensus 94 ~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~~ 173 (310)
+-+..-|.-+....+..=.-++.|+++.+ +.++++ -..++||++|-.
T Consensus 114 -----tEvm~~~~~e~~~~y~DilqvGARNMQNF---------------------------~LLke~-G~~~kPvLLKRg 160 (286)
T COG2876 114 -----TEVMDVRDVEAAAEYADILQVGARNMQNF---------------------------ALLKEV-GRQNKPVLLKRG 160 (286)
T ss_pred -----EEecCHHHHHHHHhhhhHHHhcccchhhh---------------------------HHHHHh-cccCCCeEEecC
Q ss_pred --CCHHH----HHHHHHcCCcEEEEecCCCCCCCCC---cchHHHHHHHHHHhcCCceEEEecCCCCHHHHH------HH
Q 021614 174 --LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPVFLDGGVRRGTDVF------KA 238 (310)
Q Consensus 174 --~~~~~----a~~~~~aGad~I~v~~~gg~~~~~~---~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~------k~ 238 (310)
.|.++ |+-....|-.-|++.-+|-+..+.. .-++..+.-+++.. .+|||++=-=.++..-. .+
T Consensus 161 ~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPVivDpSH~~Grr~lv~pla~AA 238 (286)
T COG2876 161 LSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVIVDPSHATGRRDLVEPLAKAA 238 (286)
T ss_pred ccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEEECCCCcccchhhHHHHHHHH
Q ss_pred HHcCCCEEEE
Q 021614 239 LALGASGIFI 248 (310)
Q Consensus 239 l~~GAd~V~i 248 (310)
+++|||++|+
T Consensus 239 ~AaGAdglmi 248 (286)
T COG2876 239 IAAGADGLMI 248 (286)
T ss_pred HhccCCeeEE
No 448
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=91.08 E-value=1.5 Score=39.72 Aligned_cols=71 Identities=21% Similarity=0.206 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHH
Q 021614 176 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 252 (310)
Q Consensus 176 ~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~ 252 (310)
.+.|+...++||++|.+-..... ....++.+..+++.+ ++||+.--=|..+.++.++..+|||+|.+.-..
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~----f~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERF----FQGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred HHHHHHHHhCCCeEEEEeccccc----CCCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 45688899999999987543211 112366777777665 799998777889999999999999999988655
No 449
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=91.05 E-value=3.5 Score=38.42 Aligned_cols=65 Identities=22% Similarity=0.374 Sum_probs=39.2
Q ss_pred Cce-EEEecCCCCHHHHHH----HHHcCC--CEEEEcHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCCHhhhcc
Q 021614 220 RIP-VFLDGGVRRGTDVFK----ALALGA--SGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 292 (310)
Q Consensus 220 ~ip-via~GGI~~~~dv~k----~l~~GA--d~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l~~~m~~~G~~~i~~l~~ 292 (310)
.+| |+.|+|+.. +...+ |..+|| ++|..||+.-+. ++..++..=....+.++...|.++|++|..
T Consensus 240 ~~P~i~LSaGV~~-~~F~~~l~~A~~aGa~fsGvL~GRAtW~~-------~v~~~~~~g~~~~~ewL~t~g~~ni~~Ln~ 311 (324)
T PRK12399 240 HLPYIYLSAGVSA-ELFQETLVFAHEAGAKFNGVLCGRATWAG-------SVKVYIEQGEAAAREWLRTEGFENIDELNK 311 (324)
T ss_pred CCCEEEEcCCCCH-HHHHHHHHHHHHcCCCcceEEeehhhhHh-------hhhhhhcCCHHHHHHHHHHHhHHHHHHHHH
Confidence 677 888899874 43333 445799 799999986442 122222222244555666666666666654
No 450
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=91.00 E-value=10 Score=33.95 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEec
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 227 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G 227 (310)
+.++...++|||.|.+-. + +.+...++.+.+ ++|+++.|
T Consensus 160 ~Ra~ay~~AGAd~i~~e~---------~-~~e~~~~i~~~~--~~P~~~~g 198 (240)
T cd06556 160 ADALAYAPAGADLIVMEC---------V-PVELAKQITEAL--AIPLAGIG 198 (240)
T ss_pred HHHHHHHHcCCCEEEEcC---------C-CHHHHHHHHHhC--CCCEEEEe
Confidence 346788899999998742 2 456666777766 68988765
No 451
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=90.93 E-value=12 Score=34.04 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=78.7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCccc
Q 021614 74 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 153 (310)
Q Consensus 74 d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (310)
..+...++++.+.++|++.|++.. |.. |. . +........
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~--~a~----------~~----~-------------------------~~~~~~~~~ 57 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWG--GAT----------FD----V-------------------------CMRFLNEDP 57 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccC--Ccc----------hh----h-------------------------hccccCCCH
Confidence 456677788889999999998753 221 00 0 000011123
Q ss_pred HHHHHHHHhhC-CCCEEEEec-------------CCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhc-
Q 021614 154 WKDVKWLQTIT-KLPILVKGV-------------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ- 218 (310)
Q Consensus 154 ~~~i~~ir~~~-~~pv~vK~~-------------~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~- 218 (310)
|+.++.+++.. +.++.+=.+ ...++.+.+.++|+|.|.++.+. ..++.+.+..+..+
T Consensus 58 ~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~--------~~~~~~~~~i~~ak~ 129 (275)
T cd07937 58 WERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDAL--------NDVRNLEVAIKAVKK 129 (275)
T ss_pred HHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecC--------ChHHHHHHHHHHHHH
Confidence 67777777653 333332111 13567889999999999886531 12333333222221
Q ss_pred CCce----EE-EecCCCCHHHHHH----HHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHH
Q 021614 219 GRIP----VF-LDGGVRRGTDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREE 274 (310)
Q Consensus 219 ~~ip----vi-a~GGI~~~~dv~k----~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~ 274 (310)
.... +. ..++..+.+.+.+ +..+|||.+.+.-.. +..-+..+.+++..+++.
T Consensus 130 ~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~----G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 130 AGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMA----GLLTPYAAYELVKALKKE 190 (275)
T ss_pred CCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC----CCCCHHHHHHHHHHHHHh
Confidence 1222 22 2456677776664 355799988877532 111234455555555543
No 452
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=90.90 E-value=8.6 Score=33.06 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=36.6
Q ss_pred cHHHHHHHHhhCC-CCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021614 153 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 153 ~~~~i~~ir~~~~-~pv~vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
.++.++++++..+ +||++=+..+.+.+..+.++|+|++.+..
T Consensus 147 g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs 189 (212)
T PRK00043 147 GLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVS 189 (212)
T ss_pred CHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeH
Confidence 4788999988876 99998887899999999999999998754
No 453
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=90.83 E-value=1.8 Score=39.79 Aligned_cols=177 Identities=18% Similarity=0.217 Sum_probs=98.0
Q ss_pred cCcceeeccccccccCCCHHHH---HHHHHHHHcCCeeEeCCCCCCCHHHHHccCC-CceeEEEEec-----CChHHHHH
Q 021614 10 ISMPIMIAPTAMQKMAHPEGEY---ATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVY-----KDRNVVAQ 80 (310)
Q Consensus 10 ~~~Pi~iapm~~~~~~~~~~~~---~la~~a~~~g~~~~~~~~~~~~~e~i~~~~~-~~~~~ql~~~-----~d~~~~~~ 80 (310)
...|+||.-..+.. .+...+. -+...|++..+|.++.-=-...++.+..+-. +..++|+..- .+.+.+.+
T Consensus 41 ~~~Pvii~~~~~~~-~~~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~ 119 (281)
T PRK06806 41 LNSPIILQIAEVRL-NHSPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKE 119 (281)
T ss_pred hCCCEEEEcCcchh-ccCChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHH
Confidence 46888886543321 1111222 3556788889998886544456666554332 5778888722 23467899
Q ss_pred HHHHHHHcCCcE--EEEeeCCCCCCcchHHhhhccCCCCcccccccc-cccccccccccchhhHHHhhhccCCcccHHHH
Q 021614 81 LVRRAERAGFKA--IALTVDTPRLGRREADIKNRFTLPPFLTLKNFQ-GLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 157 (310)
Q Consensus 81 ~i~~~~~~G~~~--i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 157 (310)
+.+.+++.|+.. =..+++--..... .+...+.-|... ..+. ....+-+--++++..+.+ + ..|.+.++.+
T Consensus 120 v~~~a~~~gv~veaE~ghlG~~d~~~~--~~g~s~t~~eea--~~f~~~tg~DyLAvaiG~~hg~~--~-~~~~l~~~~L 192 (281)
T PRK06806 120 IVELAKQYGATVEAEIGRVGGSEDGSE--DIEMLLTSTTEA--KRFAEETDVDALAVAIGNAHGMY--N-GDPNLRFDRL 192 (281)
T ss_pred HHHHHHHcCCeEEEEeeeECCccCCcc--cccceeCCHHHH--HHHHHhhCCCEEEEccCCCCCCC--C-CCCccCHHHH
Confidence 999999988743 2245541111100 000000000000 0000 000000000011111111 1 3466789999
Q ss_pred HHHHhhCCCCEEEEe--cCCHHHHHHHHHcCCcEEEEec
Q 021614 158 KWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 158 ~~ir~~~~~pv~vK~--~~~~~~a~~~~~aGad~I~v~~ 194 (310)
+++++.+++|+++=+ ..+.+.+..+.++|++.|-+..
T Consensus 193 ~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T 231 (281)
T PRK06806 193 QEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINVAT 231 (281)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhH
Confidence 999999999999888 5789999999999999998754
No 454
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=90.82 E-value=3.5 Score=38.76 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=34.4
Q ss_pred CcccHHHHHHHHhhC-CCCEEEEe-cCCHHHHHHHHHcCCcEEEEe
Q 021614 150 RSLSWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~-~~pv~vK~-~~~~~~a~~~~~aGad~I~v~ 193 (310)
+...|+.++++++.+ ++||+.=+ +.+++++..+.+ |+|+|.++
T Consensus 189 ~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIG 233 (333)
T PRK11815 189 PPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIG 233 (333)
T ss_pred CCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEc
Confidence 345689999999885 89988644 578999998886 79999774
No 455
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=90.76 E-value=0.61 Score=41.19 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=37.7
Q ss_pred ccHHHHHHHHhhC-CCCEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021614 152 LSWKDVKWLQTIT-KLPILVKGV-LTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 152 ~~~~~i~~ir~~~-~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~ 194 (310)
...+.++.+++.. +.|+++.+. .++++++.+.++|||.|++++
T Consensus 161 ~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 161 GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 3478899999998 999999875 689999999999999999865
No 456
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=90.74 E-value=2.3 Score=38.56 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=35.9
Q ss_pred cHHHHHHHHhhCCCCEEEEe-cCCHHHHHHHHHcCCcEEEEec
Q 021614 153 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~-~~~~~~a~~~~~aGad~I~v~~ 194 (310)
..+.++++|+.+++|+.++- +.++++++.+.++ +|+++|..
T Consensus 193 ~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGS 234 (265)
T COG0159 193 VKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGS 234 (265)
T ss_pred HHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcH
Confidence 46779999999999999995 5789999999999 99998853
No 457
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=90.70 E-value=0.8 Score=43.16 Aligned_cols=105 Identities=19% Similarity=0.241 Sum_probs=64.5
Q ss_pred CceeEEEEecCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHH
Q 021614 63 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 142 (310)
Q Consensus 63 ~~~~~ql~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (310)
-|.|+.|.++.+.+.+.++++.+++.|+++|.+. |+-. .. +. +..| ... .. .+
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~-NT~~-~~---~~---~~~~-~~~-------------~~--~G--- 263 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIAT-NTTV-SR---SL---VQGP-KNS-------------DE--TG--- 263 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEE-CCCC-cc---cc---ccCc-ccc-------------CC--CC---
Confidence 4778888866666678888898999999998752 2211 00 00 0000 000 00 00
Q ss_pred HhhhccCCcccHHHHHHHHhhC--CCCEE-EEecCCHHHHHHHHHcCCcEEEEec
Q 021614 143 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 143 ~~~~~~~~~~~~~~i~~ir~~~--~~pv~-vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
-+++........+.++.+++.. ++||+ ++++.+.+++...+.+|||.|.+..
T Consensus 264 GlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~t 318 (335)
T TIGR01036 264 GLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYS 318 (335)
T ss_pred cccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhH
Confidence 0111111223456788887776 58987 6678999999999999999997643
No 458
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=90.65 E-value=3 Score=38.55 Aligned_cols=82 Identities=23% Similarity=0.367 Sum_probs=56.6
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCC--C---CCCCcchHHHH----HHHHHHhcCCceEEEec--CCCCHH
Q 021614 165 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR--Q---LDYVPATIMAL----EEVVKATQGRIPVFLDG--GVRRGT 233 (310)
Q Consensus 165 ~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~--~---~~~~~~~~~~l----~~i~~~~~~~ipvia~G--GI~~~~ 233 (310)
+.|+++-++.+.-.|+.+.++|.++|.+++++-. . .|.+.-+++.+ .+|.+.+ ++||++++ |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 4688888888888999999999999999875311 1 13233333333 3333333 79999986 677888
Q ss_pred HH----HHHHHcCCCEEEE
Q 021614 234 DV----FKALALGASGIFI 248 (310)
Q Consensus 234 dv----~k~l~~GAd~V~i 248 (310)
++ .+...+||.++.|
T Consensus 94 ~v~r~V~~~~~aGaagi~I 112 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHI 112 (292)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 86 3455689988888
No 459
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=90.64 E-value=1.8 Score=39.10 Aligned_cols=71 Identities=25% Similarity=0.345 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHH
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
+.++...++||++|.|-.-. . +...+++.|..+++.+ ++|+..-==|-++.++.++..+|||+|.+=-.++
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~--~--~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEP--K--FFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAIL 142 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--S--C--CCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGS
T ss_pred HHHHHHHhcCCCEEEEECCC--C--CCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhC
Confidence 55888899999999886421 1 1224577788887776 7999998889999999999999999998765443
No 460
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=90.58 E-value=4.6 Score=38.83 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=80.7
Q ss_pred CcceeeccccccccCCCHHHHHHHHHHHHcCCeeEeCCCC--------C------CC---HHHH----HccCCCceeEEE
Q 021614 11 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS--------T------SS---VEEV----ASTGPGIRFFQL 69 (310)
Q Consensus 11 ~~Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~--------~------~~---~e~i----~~~~~~~~~~ql 69 (310)
..|++.|=|+.. .++.-..+++.+++.|+.+.-=..| . .. +.++ .+...-|.|+.|
T Consensus 113 ~~pvIaSi~~~~---s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKL 189 (385)
T PLN02495 113 DRILIASIMEEY---NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKM 189 (385)
T ss_pred CCcEEEEccCCC---CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEe
Confidence 348877755433 2333355888888988654311111 0 11 2222 222224788888
Q ss_pred EecCChHHHHHHHHHHHHcCCcEEEEeeCC-CC-CCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhc
Q 021614 70 YVYKDRNVVAQLVRRAERAGFKAIALTVDT-PR-LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQ 147 (310)
Q Consensus 70 ~~~~d~~~~~~~i~~~~~~G~~~i~i~~~~-p~-~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (310)
-+ +...+.++++.+.+.|+++|.+. |+ +. .+ -|+++.-..| .+... .+.+.+-.+.
T Consensus 190 sP--n~t~i~~ia~aa~~~Gadgi~li-NT~~~~~~---ID~~t~~p~~--------------~~~~~--~~~GGlSG~a 247 (385)
T PLN02495 190 TP--NITDITQPARVALKSGCEGVAAI-NTIMSVMG---INLDTLRPEP--------------CVEGY--STPGGYSSKA 247 (385)
T ss_pred CC--ChhhHHHHHHHHHHhCCCEEEEe-cccCcccc---cccccCcccc--------------ccCCC--CCCCCccchh
Confidence 64 34457788888899999998752 22 11 11 0111100000 00000 0000000000
Q ss_pred cCCcccHHHHHHHHhhC------CCCEE-EEecCCHHHHHHHHHcCCcEEEEec
Q 021614 148 IDRSLSWKDVKWLQTIT------KLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 148 ~~~~~~~~~i~~ir~~~------~~pv~-vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
. .......+.++++.. ++||+ +.++.+.++|...+.+||+.|.+..
T Consensus 248 l-kpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~T 300 (385)
T PLN02495 248 V-RPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCT 300 (385)
T ss_pred h-hHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEee
Confidence 0 112233444444443 47866 5567899999999999999998754
No 461
>PRK07695 transcriptional regulator TenI; Provisional
Probab=90.56 E-value=10 Score=32.58 Aligned_cols=42 Identities=24% Similarity=0.444 Sum_probs=36.4
Q ss_pred cHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEec
Q 021614 153 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
.++.++++++..++||++=+..+++.+..+.+.|+|+|.+..
T Consensus 137 g~~~l~~~~~~~~ipvia~GGI~~~~~~~~~~~Ga~gvav~s 178 (201)
T PRK07695 137 GLEELSDIARALSIPVIAIGGITPENTRDVLAAGVSGIAVMS 178 (201)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcCCCEEEEEH
Confidence 467889998888999998777799999999999999998764
No 462
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=90.47 E-value=1.7 Score=40.06 Aligned_cols=46 Identities=20% Similarity=0.450 Sum_probs=38.8
Q ss_pred CCcccHHHHHHHHhhCCCCEEEEec--CCHHHHHHHHHcCCcEEEEec
Q 021614 149 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 149 ~~~~~~~~i~~ir~~~~~pv~vK~~--~~~~~a~~~~~aGad~I~v~~ 194 (310)
.|.+.++.+++|++.+++|+++=+. .+.++.+.+.+.|+.-|-++.
T Consensus 187 ~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T 234 (285)
T PRK07709 187 EPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNT 234 (285)
T ss_pred CCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCh
Confidence 4667789999999999999988876 456889999999999997653
No 463
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=90.44 E-value=3.5 Score=36.88 Aligned_cols=41 Identities=32% Similarity=0.456 Sum_probs=34.2
Q ss_pred HHHHHHHHhhC-CCCEEEEecC-CHHHHHHHHHcCCcEEEEec
Q 021614 154 WKDVKWLQTIT-KLPILVKGVL-TAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 154 ~~~i~~ir~~~-~~pv~vK~~~-~~~~a~~~~~aGad~I~v~~ 194 (310)
.+.++++|+.. +.|+.+.+.. +.++++.+.++|+|+++++.
T Consensus 173 ~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 173 ERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred HHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 55788888877 5899888765 89999999999999998753
No 464
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=90.43 E-value=5.3 Score=37.67 Aligned_cols=127 Identities=22% Similarity=0.332 Sum_probs=71.4
Q ss_pred HHHHHHHHhhCCCCEEEEecC--CHHH----HHHHHHcCCcEEEEecCCCCCCCCC-c--chHHHHHHHHHHhcCCceEE
Q 021614 154 WKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLDYV-P--ATIMALEEVVKATQGRIPVF 224 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~~--~~~~----a~~~~~aGad~I~v~~~gg~~~~~~-~--~~~~~l~~i~~~~~~~ipvi 224 (310)
.+.++++- ..++||++|-.. +.++ ++.+...|-+-+.+--+|.+..... . ..+..+..+++.. ..|||
T Consensus 190 ~~LL~~va-~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi 266 (335)
T PRK08673 190 FDLLKEVG-KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVI 266 (335)
T ss_pred HHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEE
Confidence 45555554 468999999763 5655 4556677887777765554443211 1 2344455555443 58998
Q ss_pred EecCCCCH------HHHHHHHHcCCCEEEEcHHHHHHh-hhccHHHH-HHHHHHHHHHHHHHHHHcC
Q 021614 225 LDGGVRRG------TDVFKALALGASGIFIGRPVVYSL-AAEGEKGV-RRVLEMLREEFELAMALSG 283 (310)
Q Consensus 225 a~GGI~~~------~dv~k~l~~GAd~V~ig~~~l~~~-~~~G~~~v-~~~l~~l~~~l~~~m~~~G 283 (310)
++-.=.++ .-...++++|||++++-.-+--.- .+.|...+ -+-+..+.++++..-..+|
T Consensus 267 ~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 267 VDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred EeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 86543333 345568889999999987542210 12332211 1224455555555555544
No 465
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=90.41 E-value=4.5 Score=38.22 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=33.4
Q ss_pred ccHHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcC-CcEEEE
Q 021614 152 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIV 192 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aG-ad~I~v 192 (310)
..|+.++.+++.+++||++=+. .+++++..+++.| +|+|-+
T Consensus 272 ~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 272 PFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred hhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 3478889999999999987764 6899998888765 999965
No 466
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=90.40 E-value=4.2 Score=38.13 Aligned_cols=96 Identities=16% Similarity=0.105 Sum_probs=59.1
Q ss_pred cHHHHHHHHhhCC-CCEEEEecC------CHHHHHH-HHHcCCcEEEEecCCCC--CCCCCcchH----HHHHHHHHHhc
Q 021614 153 SWKDVKWLQTITK-LPILVKGVL------TAEDARI-AVQAGAAGIIVSNHGAR--QLDYVPATI----MALEEVVKATQ 218 (310)
Q Consensus 153 ~~~~i~~ir~~~~-~pv~vK~~~------~~~~a~~-~~~aGad~I~v~~~gg~--~~~~~~~~~----~~l~~i~~~~~ 218 (310)
.++.++.+|+..+ .|+++-... +++++.. ....++|++.++-.... ....+...+ +.+..+++.+
T Consensus 99 ~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~- 177 (326)
T cd02811 99 LAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL- 177 (326)
T ss_pred hhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc-
Confidence 3467888888775 887765431 5665544 44578999988542110 011122234 3345555544
Q ss_pred CCceEEEe--cCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 219 GRIPVFLD--GGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 219 ~~ipvia~--GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
++||++= |--.+.+++.+....|+|++.++.
T Consensus 178 -~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 178 -SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred -CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 7898883 433667888777789999999864
No 467
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=90.39 E-value=4.1 Score=36.46 Aligned_cols=83 Identities=30% Similarity=0.378 Sum_probs=54.3
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEecCC-----CCCCCCCcchHHH----HHHHHHHhcCCceEEEec--CCCC-H
Q 021614 165 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-----ARQLDYVPATIMA----LEEVVKATQGRIPVFLDG--GVRR-G 232 (310)
Q Consensus 165 ~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~g-----g~~~~~~~~~~~~----l~~i~~~~~~~ipvia~G--GI~~-~ 232 (310)
+.|+++-++-+.-.|+.+.++|.+++.+++++ |. .|.+.-+++. +.++.+.+ ++||++++ |..+ +
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~-pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~ 84 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGY-PDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDP 84 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS--SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCC-CCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchh
Confidence 47899999999999999999999999988743 21 2333333333 34444444 79999987 6666 4
Q ss_pred HHH----HHHHHcCCCEEEEcH
Q 021614 233 TDV----FKALALGASGIFIGR 250 (310)
Q Consensus 233 ~dv----~k~l~~GAd~V~ig~ 250 (310)
.++ .+...+||.++.|--
T Consensus 85 ~~v~~tv~~~~~aG~agi~IED 106 (238)
T PF13714_consen 85 ENVARTVRELERAGAAGINIED 106 (238)
T ss_dssp HHHHHHHHHHHHCT-SEEEEES
T ss_pred HHHHHHHHHHHHcCCcEEEeec
Confidence 444 456668999998843
No 468
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.37 E-value=2.3 Score=39.62 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=34.4
Q ss_pred ccHHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHc-CCcEEEEe
Q 021614 152 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQA-GAAGIIVS 193 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~a-Gad~I~v~ 193 (310)
..++.++.+++.+++||++-+. .+++++..+++. |+|.|.+.
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALG 311 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeec
Confidence 3467789999999999998765 469999999988 79998663
No 469
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=90.37 E-value=5.1 Score=33.96 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=35.6
Q ss_pred CcccHHHHHHHHhhCCCCEEEEecCCHHHHHHHHHcCCcEEEEe
Q 021614 150 RSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 193 (310)
Q Consensus 150 ~~~~~~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aGad~I~v~ 193 (310)
+...|+.++++++..++||++=+..+++.+..+.++|++++.+.
T Consensus 134 ~~~g~~~l~~~~~~~~~pv~AlGGI~~~~i~~l~~~Ga~gvAvi 177 (180)
T PF02581_consen 134 PPLGLDGLREIARASPIPVYALGGITPENIPELREAGADGVAVI 177 (180)
T ss_dssp TTCHHHHHHHHHHHTSSCEEEESS--TTTHHHHHHTT-SEEEES
T ss_pred cccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcCCCEEEEE
Confidence 44557889999999999999988889999999999999999764
No 470
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=90.36 E-value=2.5 Score=40.26 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCCCEEEEecCCHHHHHHHHHcC-CcEEEE
Q 021614 155 KDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIV 192 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~~~~~a~~~~~aG-ad~I~v 192 (310)
+..+.+|+.+++||++-+..+++.+..+++.| +|.|.+
T Consensus 282 ~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~ 320 (362)
T PRK10605 282 AFREKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAF 320 (362)
T ss_pred HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEE
Confidence 44577888889999988888999999999888 999865
No 471
>PRK05269 transaldolase B; Provisional
Probab=90.36 E-value=4.1 Score=38.11 Aligned_cols=100 Identities=15% Similarity=0.235 Sum_probs=66.2
Q ss_pred cHHHHHHHHhhC--CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCCCCC-------------CcchHHHHHHHHHHh
Q 021614 153 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 217 (310)
Q Consensus 153 ~~~~i~~ir~~~--~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~-------------~~~~~~~l~~i~~~~ 217 (310)
+|+=++.++... ++++-+=.+++.+.+..+.++|+++|...- ||-.++ +.+.+..+.++.+..
T Consensus 136 T~eGi~A~~~L~~~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPfV--gRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 213 (318)
T PRK05269 136 TWEGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFV--GRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY 213 (318)
T ss_pred CHHHHHHHHHHHHcCCceeEeEecCHHHHHHHHHcCCCEEEeec--cHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH
Confidence 345555544432 677766667899999999999999887653 221111 223455555554433
Q ss_pred ---cCCceEEEecCCCCHHHHHHHHHcCCCEEEEcHHHHHHhh
Q 021614 218 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 257 (310)
Q Consensus 218 ---~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig~~~l~~~~ 257 (310)
..+..|++ ..+|+..++.+ ..|+|.+-+.-.++..+.
T Consensus 214 k~~~~~t~im~-ASfrn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 214 KKHGYKTVVMG-ASFRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred HHcCCCceEEe-eccCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 23455666 57999999986 569999999888887654
No 472
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=90.24 E-value=7.6 Score=36.74 Aligned_cols=112 Identities=14% Similarity=0.173 Sum_probs=73.9
Q ss_pred CCHHHHHHHH-HcCCcEEEEecCCCCCCCCC---c----chHHHHHHHHHHhcCCceEEEecCCCCH-------------
Q 021614 174 LTAEDARIAV-QAGAAGIIVSNHGARQLDYV---P----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 232 (310)
Q Consensus 174 ~~~~~a~~~~-~aGad~I~v~~~gg~~~~~~---~----~~~~~l~~i~~~~~~~ipvia~GGI~~~------------- 232 (310)
.++++|+... +.|+|.+-++...-+..+.+ | -.++.|.++.+.+ .++|++.=||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v-~~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARL-PDTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccC-CCCCEEEeCCCCCchHhhHHHHhhccc
Confidence 4678887655 57999999875322222111 2 3567788887765 25999998876554
Q ss_pred ---------HHHHHHHHcCCCEEEEcHHHHHHhhh-------cc------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 021614 233 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 286 (310)
Q Consensus 233 ---------~dv~k~l~~GAd~V~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~~l~~~m~~~G~~~ 286 (310)
+++.+++.+|..-|-+++-+-.+... .. ..-.....+.+++..+..|..+|...
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ 325 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAG 325 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999976543210 11 11133444566777778888888653
No 473
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=90.16 E-value=1.5 Score=40.22 Aligned_cols=46 Identities=17% Similarity=0.454 Sum_probs=38.9
Q ss_pred CCcccHHHHHHHHhhCCCCEEEEec--CCHHHHHHHHHcCCcEEEEec
Q 021614 149 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 149 ~~~~~~~~i~~ir~~~~~pv~vK~~--~~~~~a~~~~~aGad~I~v~~ 194 (310)
.|.+.++.+++|++.+++|+++=+. .+.++.+++.+.|+.-|-+..
T Consensus 184 ~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T 231 (282)
T TIGR01858 184 TPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNVAT 231 (282)
T ss_pred CCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 4677799999999999999998876 457889999999999987653
No 474
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=90.13 E-value=3 Score=37.11 Aligned_cols=94 Identities=19% Similarity=0.176 Sum_probs=54.5
Q ss_pred HHHHHHHhhC--CCCEEEEec---CCHHH----HHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHh---cCCce
Q 021614 155 KDVKWLQTIT--KLPILVKGV---LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIP 222 (310)
Q Consensus 155 ~~i~~ir~~~--~~pv~vK~~---~~~~~----a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~---~~~ip 222 (310)
..|+++++.. +.|+..-.. ..+.. +..+...|+|+|.+.-.+.... ....+.+..+.+.+ ..+..
T Consensus 40 ~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~~---~~a~e~l~~v~~av~~~~~~~~ 116 (235)
T PF04476_consen 40 WVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGCKDY---DEAIEALEAVVRAVKDFDPDKK 116 (235)
T ss_pred HHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCCCCH---HHHHHHHHHHHHHHhhhCCCcE
Confidence 3456666655 378776553 12222 3445678999999977653221 12233444443333 23456
Q ss_pred EEEecC-------CCCHHHHHHHH-HcCCCEEEEcHH
Q 021614 223 VFLDGG-------VRRGTDVFKAL-ALGASGIFIGRP 251 (310)
Q Consensus 223 via~GG-------I~~~~dv~k~l-~~GAd~V~ig~~ 251 (310)
+++.+= --++.++.+.. .+|++++|+-+.
T Consensus 117 vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa 153 (235)
T PF04476_consen 117 VVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTA 153 (235)
T ss_pred EEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecc
Confidence 776652 12466777665 479999999874
No 475
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=90.09 E-value=11 Score=34.71 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=69.7
Q ss_pred CCHHHHHHHH-HcCCcEEEEecCCCCCCCCCc--chHHHHHHHHHHhcCCceEEEecCCCC-HHHHHHHHHcCCCEEEEc
Q 021614 174 LTAEDARIAV-QAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFIG 249 (310)
Q Consensus 174 ~~~~~a~~~~-~aGad~I~v~~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvia~GGI~~-~~dv~k~l~~GAd~V~ig 249 (310)
.++++|+... +.|+|.+-++...-+..+.+. -.++.|.++.+.+ ++|+..=||=.. .+++.|++.+|..-|-++
T Consensus 155 T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~ 232 (284)
T PRK12737 155 TNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKVNVA 232 (284)
T ss_pred CCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeC
Confidence 3578887655 689999998763222222222 3577789998877 789888775443 466778999999999999
Q ss_pred HHHHHHhhh-------cc------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021614 250 RPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 285 (310)
Q Consensus 250 ~~~l~~~~~-------~G------~~~v~~~l~~l~~~l~~~m~~~G~~ 285 (310)
+-+-.+... .. ..-.....+.+++..+..|+.+|..
T Consensus 233 T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 233 TELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred cHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 977543110 00 0112233345566666667766654
No 476
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=90.08 E-value=2.7 Score=39.90 Aligned_cols=90 Identities=22% Similarity=0.314 Sum_probs=60.6
Q ss_pred cHHHHHHHHhhC-CCCEEEEecC------CHHHHHHHHHcCCcEEEEecCC---C-CC--------CC------------
Q 021614 153 SWKDVKWLQTIT-KLPILVKGVL------TAEDARIAVQAGAAGIIVSNHG---A-RQ--------LD------------ 201 (310)
Q Consensus 153 ~~~~i~~ir~~~-~~pv~vK~~~------~~~~a~~~~~aGad~I~v~~~g---g-~~--------~~------------ 201 (310)
+.|.|.+ .. +-|.++.... +.+..+++.++|+.+|+++.-. | +. ..
T Consensus 114 s~Eei~~---~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~ 190 (351)
T cd04737 114 SLEEIAK---ASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEG 190 (351)
T ss_pred CHHHHHH---hcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccc
Confidence 4555543 33 4578887753 2455788999999999986411 1 00 00
Q ss_pred --C------------CcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEE
Q 021614 202 --Y------------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 248 (310)
Q Consensus 202 --~------------~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~i 248 (310)
. ...+|+.+..+++.. ++||++- ||.+++|+.++..+|||++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~v 248 (351)
T cd04737 191 TGKGKGISEIYAAAKQKLSPADIEFIAKIS--GLPVIVK-GIQSPEDADVAINAGADGIWV 248 (351)
T ss_pred cccCcchhhhhhhccCCCCHHHHHHHHHHh--CCcEEEe-cCCCHHHHHHHHHcCCCEEEE
Confidence 0 012456666666655 6899987 589999999999999999999
No 477
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=89.81 E-value=15 Score=33.28 Aligned_cols=96 Identities=17% Similarity=0.111 Sum_probs=57.0
Q ss_pred HHHHHHHhhCCCCEEEEecC-C-HHHHHHHHHcCCcEEEEecCCC-CCCCCC--cchHHHHHHHHHHhcCCceEEEec--
Q 021614 155 KDVKWLQTITKLPILVKGVL-T-AEDARIAVQAGAAGIIVSNHGA-RQLDYV--PATIMALEEVVKATQGRIPVFLDG-- 227 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~-~-~~~a~~~~~aGad~I~v~~~gg-~~~~~~--~~~~~~l~~i~~~~~~~ipvia~G-- 227 (310)
-++.++++.+.+|+.+-... + .+-...+..+|+|+|.+-.+.| +-.+.| .+....+.+.++.++.++.|+++=
T Consensus 69 ~i~~~v~~~~~~p~GvnvL~nd~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~ 148 (257)
T TIGR00259 69 VIAGQLKSDVSIPLGINVLRNDAVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVV 148 (257)
T ss_pred HHHHHHHHhcCCCeeeeeecCCCHHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceee
Confidence 35788888888997765443 3 3345667789999999854332 212222 123344455555555456666642
Q ss_pred ------CCCCHHHHHH-HHHcC-CCEEEEcH
Q 021614 228 ------GVRRGTDVFK-ALALG-ASGIFIGR 250 (310)
Q Consensus 228 ------GI~~~~dv~k-~l~~G-Ad~V~ig~ 250 (310)
+=++-++..+ +...| ||++.+..
T Consensus 149 kh~~~l~~~~~~e~a~~~~~~~~aDavivtG 179 (257)
T TIGR00259 149 KHAVHLGNRDLESIALDTVERGLADAVILSG 179 (257)
T ss_pred cccCcCCCCCHHHHHHHHHHhcCCCEEEECc
Confidence 2244555555 44455 99998875
No 478
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=89.79 E-value=2.9 Score=37.47 Aligned_cols=84 Identities=17% Similarity=0.101 Sum_probs=54.7
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCCC----CCCCcchHHHHHH----HHHHhcCCceEEEecCCC---CHH
Q 021614 165 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ----LDYVPATIMALEE----VVKATQGRIPVFLDGGVR---RGT 233 (310)
Q Consensus 165 ~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~~----~~~~~~~~~~l~~----i~~~~~~~ipvia~GGI~---~~~ 233 (310)
+-|+++-.+-+.-.|+.+.++|+|+|.++++.... .|...-+++.+.. +.+.. ...||+++.--. +++
T Consensus 11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~-~~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA-PLALIVADLPFGAYGAPT 89 (240)
T ss_pred CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC-CCCCEEEeCCCCCCcCHH
Confidence 46888777788889999999999999998753211 1222223433322 22222 247999997444 335
Q ss_pred H----HHHHHHcCCCEEEEc
Q 021614 234 D----VFKALALGASGIFIG 249 (310)
Q Consensus 234 d----v~k~l~~GAd~V~ig 249 (310)
+ +.+.+.+||++|-+-
T Consensus 90 ~~~~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEc
Confidence 5 445677999999994
No 479
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=89.79 E-value=16 Score=33.52 Aligned_cols=183 Identities=16% Similarity=0.099 Sum_probs=102.8
Q ss_pred ceeeccccccccCCCHHHHHHHHHHHHcCCeeE--eCCC---CCCCHHHHH-------ccCCC--ceeEEEEecCChHHH
Q 021614 13 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMT--LSSW---STSSVEEVA-------STGPG--IRFFQLYVYKDRNVV 78 (310)
Q Consensus 13 Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~--~~~~---~~~~~e~i~-------~~~~~--~~~~ql~~~~d~~~~ 78 (310)
|.++.|+.-.+-.+.++-..+.+-..+.|+... .++. ...+.||.. +...+ +.+.+.. . +.+..
T Consensus 6 ~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~ 83 (289)
T cd00951 6 SFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATA 83 (289)
T ss_pred EEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHH
Confidence 556777754333445555667777888887543 3332 234555422 22122 5566664 3 77888
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHH
Q 021614 79 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 158 (310)
Q Consensus 79 ~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (310)
.++++.+++.|++++.+. .|... +. +.+-..+..+
T Consensus 84 i~~a~~a~~~Gad~v~~~--pP~y~--------------~~-----------------------------~~~~i~~~f~ 118 (289)
T cd00951 84 IAYAQAAEKAGADGILLL--PPYLT--------------EA-----------------------------PQEGLYAHVE 118 (289)
T ss_pred HHHHHHHHHhCCCEEEEC--CCCCC--------------CC-----------------------------CHHHHHHHHH
Confidence 889999999999998772 22210 00 0011124567
Q ss_pred HHHhhCCCCEEEEec----CCHHHHHHHHH-c-CCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCH
Q 021614 159 WLQTITKLPILVKGV----LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 232 (310)
Q Consensus 159 ~ir~~~~~pv~vK~~----~~~~~a~~~~~-a-Gad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (310)
.+.+.+++||++=.. ++++...++.+ . .+-+|+-+. ..+..+.++.+..++++.|+. |-.+.
T Consensus 119 ~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~pnivgiKds~----------~d~~~~~~~~~~~~~~~~v~~--G~~~~ 186 (289)
T cd00951 119 AVCKSTDLGVIVYNRANAVLTADSLARLAERCPNLVGFKDGV----------GDIELMRRIVAKLGDRLLYLG--GLPTA 186 (289)
T ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEe--CCCcc
Confidence 777778899886432 56777777776 3 333333221 123344444444433444333 33222
Q ss_pred HH-HHHHHHcCCCEEEEcHHHHH
Q 021614 233 TD-VFKALALGASGIFIGRPVVY 254 (310)
Q Consensus 233 ~d-v~k~l~~GAd~V~ig~~~l~ 254 (310)
++ +..++.+||++++.|.+-++
T Consensus 187 d~~~~~~l~~Ga~G~is~~~n~~ 209 (289)
T cd00951 187 EVFALAYLAMGVPTYSSAVFNFV 209 (289)
T ss_pred hHhHHHHHHCCCCEEEechhhhh
Confidence 33 56788999999988865443
No 480
>PLN02334 ribulose-phosphate 3-epimerase
Probab=89.77 E-value=14 Score=32.67 Aligned_cols=90 Identities=10% Similarity=-0.000 Sum_probs=51.8
Q ss_pred HHHHHHHhhCCCCEEEEecC-CH-HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCH
Q 021614 155 KDVKWLQTITKLPILVKGVL-TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 232 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~~-~~-~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 232 (310)
+.++++++.++.|+-+-... ++ +....+.++|+|+|.++.. + +........+..+++ ..+-+-.+-.-.|+
T Consensus 55 ~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~---q-~~~d~~~~~~~~i~~---~g~~iGls~~~~t~ 127 (229)
T PLN02334 55 PVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIE---Q-ASTIHLHRLIQQIKS---AGMKAGVVLNPGTP 127 (229)
T ss_pred HHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeec---c-ccchhHHHHHHHHHH---CCCeEEEEECCCCC
Confidence 67888888877776655543 34 4577889999999977542 1 000112233333332 23333333322355
Q ss_pred HHHHHHHHcC--CCEEEEcHH
Q 021614 233 TDVFKALALG--ASGIFIGRP 251 (310)
Q Consensus 233 ~dv~k~l~~G--Ad~V~ig~~ 251 (310)
.+..+.+..+ +|.++++.-
T Consensus 128 ~~~~~~~~~~~~~Dyi~~~~v 148 (229)
T PLN02334 128 VEAVEPVVEKGLVDMVLVMSV 148 (229)
T ss_pred HHHHHHHHhccCCCEEEEEEE
Confidence 6666655444 999999863
No 481
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=89.72 E-value=8.1 Score=36.57 Aligned_cols=112 Identities=12% Similarity=0.186 Sum_probs=73.4
Q ss_pred CCHHHHHHHH-HcCCcEEEEecCCCCCCCCC---c----chHHHHHHHHHHhcCCceEEEecCCCCH-------------
Q 021614 174 LTAEDARIAV-QAGAAGIIVSNHGARQLDYV---P----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 232 (310)
Q Consensus 174 ~~~~~a~~~~-~aGad~I~v~~~gg~~~~~~---~----~~~~~l~~i~~~~~~~ipvia~GGI~~~------------- 232 (310)
.++++|.... +.|+|.+-++...-+..+.+ | -.++.|.++.+.+ .++|++.=||=..+
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v-~~vPLVLHGgSGvp~~~~~~~~~~g~~ 251 (347)
T PRK13399 173 TDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARL-PNTHLVMHGSSSVPQELQEIINAYGGK 251 (347)
T ss_pred CCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhc-CCCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 4588887765 57999998875322222111 2 3466788888776 25999998876544
Q ss_pred ---------HHHHHHHHcCCCEEEEcHHHHHHhhh-------cc------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 021614 233 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 286 (310)
Q Consensus 233 ---------~dv~k~l~~GAd~V~ig~~~l~~~~~-------~G------~~~v~~~l~~l~~~l~~~m~~~G~~~ 286 (310)
+++.|++.+|..-|-+++-+-.+... .. ..-.....+.+.+-+++.|..+|...
T Consensus 252 ~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ 327 (347)
T PRK13399 252 MKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999966443210 00 01133344566677777888888664
No 482
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=89.69 E-value=2.2 Score=40.07 Aligned_cols=40 Identities=15% Similarity=0.286 Sum_probs=33.1
Q ss_pred cHHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcC-CcEEEE
Q 021614 153 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAG-AAGIIV 192 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aG-ad~I~v 192 (310)
.++..+.+++.+++||+.-+. .+++++..+++.| +|.|.+
T Consensus 278 ~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 278 QVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred cHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 356788899999999998765 5899999999988 898854
No 483
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=89.58 E-value=19 Score=34.00 Aligned_cols=156 Identities=14% Similarity=0.095 Sum_probs=84.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcc
Q 021614 73 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 152 (310)
Q Consensus 73 ~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (310)
-+.+...++++.+.++|++.|+++.+..-.+ .+..... ....
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~------------------------------------~s~~~g~--~~~~ 63 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGG------------------------------------SSFNYGF--GAHT 63 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCC------------------------------------ccccCCC--CCCC
Confidence 3678888999999999999999865421000 0000000 0011
Q ss_pred cHHHHHHHHhhC-CCCEEEEe---cCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCce-EEEec
Q 021614 153 SWKDVKWLQTIT-KLPILVKG---VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP-VFLDG 227 (310)
Q Consensus 153 ~~~~i~~ir~~~-~~pv~vK~---~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ip-via~G 227 (310)
.++.++.+++.. +..+.+-. ..+.++.+.+.++|+|.|.+..+-.. .....+.+..++ ..+..+- .+.+.
T Consensus 64 ~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e----~~~~~~~i~~ak-~~G~~v~~~l~~a 138 (337)
T PRK08195 64 DEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTE----ADVSEQHIGLAR-ELGMDTVGFLMMS 138 (337)
T ss_pred HHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecch----HHHHHHHHHHHH-HCCCeEEEEEEec
Confidence 367788886654 33443322 23678999999999999998764211 011122222222 2221211 22234
Q ss_pred CCCCHHHHHH----HHHcCCCEEEEcHHHHHHhhhccHHHHHHHHHHHHHHH
Q 021614 228 GVRRGTDVFK----ALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEF 275 (310)
Q Consensus 228 GI~~~~dv~k----~l~~GAd~V~ig~~~l~~~~~~G~~~v~~~l~~l~~~l 275 (310)
+-.+++.+.+ +...||+.+.+.-.+ +.--++.+.+++..+++++
T Consensus 139 ~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~----G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 139 HMAPPEKLAEQAKLMESYGAQCVYVVDSA----GALLPEDVRDRVRALRAAL 186 (337)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEeCCCC----CCCCHHHHHHHHHHHHHhc
Confidence 5567766654 334699998877532 1112445555666665544
No 484
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=89.58 E-value=24 Score=35.31 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=30.7
Q ss_pred CCceEEEecCCCCHHHHHHHHH------cC-----CCEEEEcHHHHHH
Q 021614 219 GRIPVFLDGGVRRGTDVFKALA------LG-----ASGIFIGRPVVYS 255 (310)
Q Consensus 219 ~~ipvia~GGI~~~~dv~k~l~------~G-----Ad~V~ig~~~l~~ 255 (310)
.+|-+++.|||.+++|...+|- .| .|++.+|++.|..
T Consensus 212 ~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMat 259 (717)
T COG4981 212 DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMAT 259 (717)
T ss_pred CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhh
Confidence 4799999999999999987763 23 5999999988764
No 485
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=89.50 E-value=2.2 Score=40.92 Aligned_cols=47 Identities=21% Similarity=0.183 Sum_probs=36.1
Q ss_pred cCCcccHHHHHHHHhhCCCCEEEEecCC----HHHHHHHHHcCCcEEEEec
Q 021614 148 IDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 148 ~~~~~~~~~i~~ir~~~~~pv~vK~~~~----~~~a~~~~~aGad~I~v~~ 194 (310)
.+|....+.|+.+++.+++||-+-.-.| .-....+.++|+|.|...-
T Consensus 182 ltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAi 232 (472)
T COG5016 182 LTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDTAI 232 (472)
T ss_pred CChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhhhhh
Confidence 4677778999999999999998765332 3334678899999998643
No 486
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=89.48 E-value=4 Score=37.94 Aligned_cols=79 Identities=24% Similarity=0.277 Sum_probs=51.7
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcc
Q 021614 73 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 152 (310)
Q Consensus 73 ~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (310)
-|.+.+.++++.+.+.|+++|.++ ++ + | -...+ ..+-
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~-Gs-t-G------------------------------------E~~~L----t~eE 62 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTM-GT-F-G------------------------------------ECATL----TWEE 62 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC-cc-c-c------------------------------------cchhC----CHHH
Confidence 488999999999999999999862 11 1 0 00011 1111
Q ss_pred cHHHHHHHHhhC--CCCEEEEec-CC----HHHHHHHHHcCCcEEEEec
Q 021614 153 SWKDVKWLQTIT--KLPILVKGV-LT----AEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 153 ~~~~i~~ir~~~--~~pv~vK~~-~~----~~~a~~~~~aGad~I~v~~ 194 (310)
-.+.++.+++.. ++||++... .+ .+.++.+.++|+|++.+..
T Consensus 63 r~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~ 111 (309)
T cd00952 63 KQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGR 111 (309)
T ss_pred HHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 124455565554 589998875 33 3457889999999998864
No 487
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=89.40 E-value=1.6 Score=41.86 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 021614 177 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 249 (310)
Q Consensus 177 ~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~V~ig 249 (310)
+....+.++|+|.|++...-|.+ .-.++.+.-+++.. +.++||+ |.+-+.+.+...+++|||++=+|
T Consensus 254 ~rl~ll~~aGvdvviLDSSqGnS----~~qiemik~iK~~y-P~l~Via-GNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQGNS----IYQLEMIKYIKETY-PDLQIIA-GNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred HHHHHhhhcCCcEEEEecCCCcc----hhHHHHHHHHHhhC-CCceeec-cceeeHHHHHHHHHccCceeEec
Confidence 44678899999999998754433 12355566666654 3678887 77888999999999999985544
No 488
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=89.38 E-value=2.2 Score=39.28 Aligned_cols=46 Identities=17% Similarity=0.435 Sum_probs=38.7
Q ss_pred CCcccHHHHHHHHhhCCCCEEEEec--CCHHHHHHHHHcCCcEEEEec
Q 021614 149 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 149 ~~~~~~~~i~~ir~~~~~pv~vK~~--~~~~~a~~~~~aGad~I~v~~ 194 (310)
.|.+.++.++++++.+++|+++=+. .+.++.+++.+.|+.-|-++.
T Consensus 186 ~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T 233 (284)
T PRK12737 186 EPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGICKVNVAT 233 (284)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCc
Confidence 4667799999999999999988876 456789999999999887654
No 489
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=89.32 E-value=2.3 Score=39.22 Aligned_cols=46 Identities=13% Similarity=0.393 Sum_probs=38.6
Q ss_pred CCcccHHHHHHHHhhCCCCEEEEec--CCHHHHHHHHHcCCcEEEEec
Q 021614 149 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 149 ~~~~~~~~i~~ir~~~~~pv~vK~~--~~~~~a~~~~~aGad~I~v~~ 194 (310)
.|.+.++.+++|++.+++|+++=+. .+.++.+.+.+.|+.-|-+..
T Consensus 186 ~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T 233 (286)
T PRK12738 186 TPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVAT 233 (286)
T ss_pred CCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCc
Confidence 4667799999999999999998876 456889999999999887653
No 490
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=89.31 E-value=3.8 Score=37.55 Aligned_cols=84 Identities=26% Similarity=0.368 Sum_probs=57.4
Q ss_pred CCCEEEEecCCHHHHHHHHHcCCcEEEEecCCCC---C-CCCCcchHHHH----HHHHHHhcCCceEEEec--CCCCHHH
Q 021614 165 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR---Q-LDYVPATIMAL----EEVVKATQGRIPVFLDG--GVRRGTD 234 (310)
Q Consensus 165 ~~pv~vK~~~~~~~a~~~~~aGad~I~v~~~gg~---~-~~~~~~~~~~l----~~i~~~~~~~ipvia~G--GI~~~~d 234 (310)
+-|+.+-++.++-.|+.+.++|.+++.+|+.+-. . .|.+..+++.+ .+|.+.+ ++||+++. |..++..
T Consensus 17 ~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~dtGfG~~~n 94 (289)
T COG2513 17 GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDIDTGFGEALN 94 (289)
T ss_pred CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEeccCCCCcHHH
Confidence 4578888888899999999999999999885411 1 23444445443 3333333 89999876 6666555
Q ss_pred HH----HHHHcCCCEEEEcH
Q 021614 235 VF----KALALGASGIFIGR 250 (310)
Q Consensus 235 v~----k~l~~GAd~V~ig~ 250 (310)
+. ++..+|+.++.|=-
T Consensus 95 vartV~~~~~aG~agi~iED 114 (289)
T COG2513 95 VARTVRELEQAGAAGIHIED 114 (289)
T ss_pred HHHHHHHHHHcCcceeeeee
Confidence 44 55668998887754
No 491
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=89.30 E-value=14 Score=32.08 Aligned_cols=126 Identities=17% Similarity=0.060 Sum_probs=73.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCc
Q 021614 72 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 151 (310)
Q Consensus 72 ~~d~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (310)
..|...+.+.++++.+.|++.|.+.+- | + + .. + +..
T Consensus 12 ~~~~~~~~~~~~~~~~~G~~~i~l~~~---------d---~---~--------------------------~~-~--~~~ 47 (220)
T PRK05581 12 SADFARLGEEVKAVEAAGADWIHVDVM---------D---G---H--------------------------FV-P--NLT 47 (220)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCc---------c---C---C--------------------------cC-C--CcC
Confidence 356677778899999999998876311 0 0 0 00 0 111
Q ss_pred ccHHHHHHHHhhCCCCEEEE--ecCCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCC
Q 021614 152 LSWKDVKWLQTITKLPILVK--GVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 229 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~pv~vK--~~~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI 229 (310)
+..+.++++++.++.|+.+- ..-..+....+.++|+|+|.++.. +. ......+..+++ . ++.+..+=+-
T Consensus 48 ~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~---~~---~~~~~~~~~~~~-~--~~~~g~~~~~ 118 (220)
T PRK05581 48 IGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFHVE---AS---EHIHRLLQLIKS-A--GIKAGLVLNP 118 (220)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEeec---cc---hhHHHHHHHHHH-c--CCEEEEEECC
Confidence 23567888887665454332 222334567778999999988652 10 111222332222 2 4444444455
Q ss_pred CCHHHHHHHHHcCCCEEEEcH
Q 021614 230 RRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 230 ~~~~dv~k~l~~GAd~V~ig~ 250 (310)
.+..+..+.+..++|.+.+++
T Consensus 119 ~t~~e~~~~~~~~~d~i~~~~ 139 (220)
T PRK05581 119 ATPLEPLEDVLDLLDLVLLMS 139 (220)
T ss_pred CCCHHHHHHHHhhCCEEEEEE
Confidence 666777787777899888875
No 492
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=89.24 E-value=0.95 Score=40.36 Aligned_cols=43 Identities=30% Similarity=0.394 Sum_probs=37.5
Q ss_pred ccHHHHHHHHhhCCC-CEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021614 152 LSWKDVKWLQTITKL-PILVKGV-LTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 152 ~~~~~i~~ir~~~~~-pv~vK~~-~~~~~a~~~~~aGad~I~v~~ 194 (310)
...+.++++++..+. |+++.+. .+.++++.+.++|||+|++++
T Consensus 170 ~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGS 214 (232)
T PRK04169 170 VPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGN 214 (232)
T ss_pred CCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEECh
Confidence 347889999999888 9999874 689999999999999999865
No 493
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=89.23 E-value=3.6 Score=38.22 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=57.6
Q ss_pred cHHHHHHHHhhCCCCEEEEecC---C-HHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecC
Q 021614 153 SWKDVKWLQTITKLPILVKGVL---T-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 228 (310)
Q Consensus 153 ~~~~i~~ir~~~~~pv~vK~~~---~-~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GG 228 (310)
..+.|+++|+.++.|+-+-... . .+..+.+.+.|++.|.++. + .+ ...+.++++. .+++++ -
T Consensus 50 l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~--g------~p-~~~i~~lk~~---g~~v~~--~ 115 (307)
T TIGR03151 50 VRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGA--G------NP-GKYIPRLKEN---GVKVIP--V 115 (307)
T ss_pred HHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcC--C------Cc-HHHHHHHHHc---CCEEEE--E
Confidence 3467899998888898776542 2 2345668899999997642 2 12 2344444432 577775 6
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 021614 229 VRRGTDVFKALALGASGIFI 248 (310)
Q Consensus 229 I~~~~dv~k~l~~GAd~V~i 248 (310)
+.+.+++.++..+|||.+.+
T Consensus 116 v~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 116 VASVALAKRMEKAGADAVIA 135 (307)
T ss_pred cCCHHHHHHHHHcCCCEEEE
Confidence 78899999999999999987
No 494
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=89.22 E-value=5.6 Score=36.34 Aligned_cols=95 Identities=23% Similarity=0.426 Sum_probs=60.9
Q ss_pred HHHHHHHHhhCCCCEEEEec--CCHHH----HHHHHHcCCcEEEEecCCCCC-CCCCcchHHHHHHHHHHhcCCceEEEe
Q 021614 154 WKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQ-LDYVPATIMALEEVVKATQGRIPVFLD 226 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~--~~~~~----a~~~~~aGad~I~v~~~gg~~-~~~~~~~~~~l~~i~~~~~~~ipvia~ 226 (310)
.+.++.+.+ ++.||.+|-. .++++ ++.+.+.|-.-|.+.-+|-+- ...-...+..+..+++.. ...|||.|
T Consensus 120 tdLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~-t~lPVi~D 197 (281)
T PRK12457 120 TDLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTT-GDLPVIFD 197 (281)
T ss_pred HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhC-CCCCEEEe
Confidence 355666644 6899999976 67766 577788899999887766431 111123445555555431 25899986
Q ss_pred ---------------cCCCCHH--HHHHHHHcCCCEEEEcH
Q 021614 227 ---------------GGVRRGT--DVFKALALGASGIFIGR 250 (310)
Q Consensus 227 ---------------GGI~~~~--dv~k~l~~GAd~V~ig~ 250 (310)
||-|..- -+..+++.|||++++-.
T Consensus 198 pSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 198 VTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred CCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4444322 23357789999999976
No 495
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=89.21 E-value=5 Score=38.10 Aligned_cols=96 Identities=13% Similarity=0.071 Sum_probs=60.3
Q ss_pred cHHHHHHHHhhC-CCCEEEEec------CCHHHH-HHHHHcCCcEEEEecCCCCC--CCCCcchHH----HHHHHHHHhc
Q 021614 153 SWKDVKWLQTIT-KLPILVKGV------LTAEDA-RIAVQAGAAGIIVSNHGARQ--LDYVPATIM----ALEEVVKATQ 218 (310)
Q Consensus 153 ~~~~i~~ir~~~-~~pv~vK~~------~~~~~a-~~~~~aGad~I~v~~~gg~~--~~~~~~~~~----~l~~i~~~~~ 218 (310)
..+.++.+|+.. +.|+++=+. .+++++ +.+...++|++.++-..... ...+...+. .+.++++.+
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~- 185 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL- 185 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh-
Confidence 446678888876 789887442 234544 45556789999886422111 111222343 345555544
Q ss_pred CCceEEE--ecCCCCHHHHHHHHHcCCCEEEEcH
Q 021614 219 GRIPVFL--DGGVRRGTDVFKALALGASGIFIGR 250 (310)
Q Consensus 219 ~~ipvia--~GGI~~~~dv~k~l~~GAd~V~ig~ 250 (310)
++||++ .|.-.+.+++.++..+|+|++.++.
T Consensus 186 -~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 186 -PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred -CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 689887 4544668888778889999999854
No 496
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=89.15 E-value=17 Score=33.10 Aligned_cols=181 Identities=20% Similarity=0.187 Sum_probs=101.1
Q ss_pred ceeeccccccccCCCHHHHHHHHHHHHcCCeeEe--CCCC---CCCHHHHH-------c-cCCC-ceeEEEEecCChHHH
Q 021614 13 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SSWS---TSSVEEVA-------S-TGPG-IRFFQLYVYKDRNVV 78 (310)
Q Consensus 13 Pi~iapm~~~~~~~~~~~~~la~~a~~~g~~~~~--~~~~---~~~~e~i~-------~-~~~~-~~~~ql~~~~d~~~~ 78 (310)
|.++.|+.-.+-.+.++-..+.+-..+.|+...+ ++.+ +.+.+|.. + .... +.++++. ..+.+..
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 4556677543323444445577777788875433 3322 34444422 1 1222 5666765 4578888
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccHHHHH
Q 021614 79 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 158 (310)
Q Consensus 79 ~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (310)
.++++.+++.|++++.+.. |... +.+ -.+ ..+..+
T Consensus 86 i~~a~~a~~~Gad~v~v~~--P~~~--------------~~s-------------------~~~----------l~~y~~ 120 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP--PYYF--------------KPS-------------------QEE----------LIDYFR 120 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE--STSS--------------SCC-------------------HHH----------HHHHHH
T ss_pred HHHHHHHhhcCceEEEEec--cccc--------------cch-------------------hhH----------HHHHHH
Confidence 8999999999999998743 3220 000 011 125577
Q ss_pred HHHhhCCCCEEEEec-------CCHHHHHHHHHcC-CcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEecCCC
Q 021614 159 WLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 230 (310)
Q Consensus 159 ~ir~~~~~pv~vK~~-------~~~~~a~~~~~aG-ad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~GGI~ 230 (310)
.+.+.+++|+++=.. .+++...++.+.. +-+++.+. .++..+.++.+....++.++. |
T Consensus 121 ~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s~----------~~~~~~~~~~~~~~~~~~v~~-G--- 186 (289)
T PF00701_consen 121 AIADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDSS----------GDLERLIQLLRAVGPDFSVFC-G--- 186 (289)
T ss_dssp HHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEESS----------SBHHHHHHHHHHSSTTSEEEE-S---
T ss_pred HHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcCc----------hhHHHHHHHhhhcccCeeeec-c---
Confidence 777888999997543 3466666666622 22333211 123344455555445665553 4
Q ss_pred CHHHHHHHHHcCCCEEEEcHHHH
Q 021614 231 RGTDVFKALALGASGIFIGRPVV 253 (310)
Q Consensus 231 ~~~dv~k~l~~GAd~V~ig~~~l 253 (310)
+...+..++.+|+++++.+.+.+
T Consensus 187 ~d~~~~~~l~~G~~G~is~~~n~ 209 (289)
T PF00701_consen 187 DDELLLPALAAGADGFISGLANV 209 (289)
T ss_dssp SGGGHHHHHHTTSSEEEESGGGT
T ss_pred ccccccccccccCCEEEEccccc
Confidence 45567889999999999998654
No 497
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=89.09 E-value=0.63 Score=41.37 Aligned_cols=41 Identities=29% Similarity=0.466 Sum_probs=33.0
Q ss_pred HHHHHHHHhhCCCCEEEEec-CCHHHHHHHHHcCCcEEEEec
Q 021614 154 WKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 154 ~~~i~~ir~~~~~pv~vK~~-~~~~~a~~~~~aGad~I~v~~ 194 (310)
-++++..++..+.|+++.+. .+.+.|+.+.++|||.|++.|
T Consensus 171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn 212 (230)
T PF01884_consen 171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGN 212 (230)
T ss_dssp HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESC
T ss_pred HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECC
Confidence 34555555667999999975 689999999999999999876
No 498
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.06 E-value=6.5 Score=37.30 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=0.0
Q ss_pred ccccccccCCCHHHHHHHHHHHHcCCeeEeCCCCCCCHHHHHc----------------------cCCCceeEEEEecCC
Q 021614 17 APTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS----------------------TGPGIRFFQLYVYKD 74 (310)
Q Consensus 17 apm~~~~~~~~~~~~~la~~a~~~g~~~~~~~~~~~~~e~i~~----------------------~~~~~~~~ql~~~~d 74 (310)
+|-+..++. .++-.-++++++++|+++...-++...++.+.+ ....+..+.-....+
T Consensus 142 sp~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t 220 (352)
T PRK13396 142 SPYAFQGHG-ESALELLAAAREATGLGIITEVMDAADLEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAAT 220 (352)
T ss_pred CCcccCCch-HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCC
Q ss_pred hHHHHHHHHHHHHcCCcEEEEeeCCCCCCcchHHhhhccCCCCcccccccccccccccccccchhhHHHhhhccCCcccH
Q 021614 75 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 154 (310)
Q Consensus 75 ~~~~~~~i~~~~~~G~~~i~i~~~~p~~~~r~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (310)
.+.+...++.+...|-.-+.+ | ..|.-.+.+.-......+
T Consensus 221 ~ee~~~A~e~i~~~Gn~~viL---~-------------------------------------erG~rtf~s~y~~~~~dl 260 (352)
T PRK13396 221 IDEWLMAAEYILAAGNPNVIL---C-------------------------------------ERGIRTFDRQYTRNTLDL 260 (352)
T ss_pred HHHHHHHHHHHHHcCCCeEEE---E-------------------------------------ecCCccCcCCCCCCCcCH
Q ss_pred HHHHHHHhhCCCCEEEEec-------CCHHHHHHHHHcCCcEEEEecC
Q 021614 155 KDVKWLQTITKLPILVKGV-------LTAEDARIAVQAGAAGIIVSNH 195 (310)
Q Consensus 155 ~~i~~ir~~~~~pv~vK~~-------~~~~~a~~~~~aGad~I~v~~~ 195 (310)
..+..+++.+++||++=-. ..+..++.+..+|||++.+--|
T Consensus 261 ~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H 308 (352)
T PRK13396 261 SVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVH 308 (352)
T ss_pred HHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEec
No 499
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=88.92 E-value=3.6 Score=38.32 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=34.2
Q ss_pred cccHHHHHHHHhhC--CCCEE-EEecCCHHHHHHHHHcCCcEEEEec
Q 021614 151 SLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 194 (310)
Q Consensus 151 ~~~~~~i~~ir~~~--~~pv~-vK~~~~~~~a~~~~~aGad~I~v~~ 194 (310)
+.....+.++++.. ++||+ +.++.+.+++...+.+||+.|.+..
T Consensus 225 p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~t 271 (310)
T PRK02506 225 PTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGT 271 (310)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhH
Confidence 34567788887776 68876 4456899999999999999997643
No 500
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=88.80 E-value=10 Score=33.38 Aligned_cols=91 Identities=29% Similarity=0.245 Sum_probs=61.0
Q ss_pred HHHHHHHHhhCC-CCEEE--Eec-CCHHHHHHHHHcCCcEEEEecCCCCCCCCCcchHHHHHHHHHHhcCCceEEEec-C
Q 021614 154 WKDVKWLQTITK-LPILV--KGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG-G 228 (310)
Q Consensus 154 ~~~i~~ir~~~~-~pv~v--K~~-~~~~~a~~~~~aGad~I~v~~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvia~G-G 228 (310)
.+.++.+|+.++ .+|++ |.. ...-+++.+.++|||.+++++.. ..+++....+..+.. ...+..+= |
T Consensus 44 ~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A------~~~TI~~~i~~A~~~--~~~v~iDl~~ 115 (217)
T COG0269 44 MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAA------DDATIKKAIKVAKEY--GKEVQIDLIG 115 (217)
T ss_pred HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecC------CHHHHHHHHHHHHHc--CCeEEEEeec
Confidence 467899999864 55543 222 22457899999999999998742 123444433333333 34444332 7
Q ss_pred CCCHHHHHHHHH-cCCCEEEEcHHH
Q 021614 229 VRRGTDVFKALA-LGASGIFIGRPV 252 (310)
Q Consensus 229 I~~~~dv~k~l~-~GAd~V~ig~~~ 252 (310)
+.++.+..+.+. +|.|.+.+=|..
T Consensus 116 ~~~~~~~~~~l~~~gvd~~~~H~g~ 140 (217)
T COG0269 116 VWDPEQRAKWLKELGVDQVILHRGR 140 (217)
T ss_pred CCCHHHHHHHHHHhCCCEEEEEecc
Confidence 899999999999 999999887754
Done!