Query 021615
Match_columns 310
No_of_seqs 313 out of 2988
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:21:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0536 Obg Predicted GTPase [ 100.0 5.5E-52 1.2E-56 371.3 18.7 238 20-277 88-334 (369)
2 KOG1489 Predicted GTP-binding 100.0 2.4E-48 5.3E-53 343.8 15.0 230 23-272 129-363 (366)
3 PRK12299 obgE GTPase CgtA; Rev 100.0 4E-47 8.8E-52 351.7 22.4 238 18-275 85-327 (335)
4 PRK12297 obgE GTPase CgtA; Rev 100.0 3.3E-46 7.2E-51 353.8 21.5 239 18-277 85-328 (424)
5 PRK12296 obgE GTPase CgtA; Rev 100.0 7E-46 1.5E-50 355.7 21.9 239 18-277 87-341 (500)
6 TIGR02729 Obg_CgtA Obg family 100.0 3.2E-45 6.9E-50 338.7 22.6 235 19-274 85-327 (329)
7 PRK12298 obgE GTPase CgtA; Rev 100.0 1.5E-44 3.3E-49 340.6 22.5 242 18-279 86-336 (390)
8 cd01898 Obg Obg subfamily. Th 99.9 3.9E-25 8.5E-30 185.3 17.5 164 103-273 1-168 (170)
9 COG2262 HflX GTPases [General 99.9 1.2E-25 2.6E-30 206.9 9.8 229 30-276 113-356 (411)
10 PRK11058 GTPase HflX; Provisio 99.9 1.4E-25 3.1E-30 214.1 8.3 162 101-275 196-361 (426)
11 TIGR03156 GTP_HflX GTP-binding 99.9 5E-25 1.1E-29 205.8 6.3 158 101-273 188-349 (351)
12 COG1160 Predicted GTPases [Gen 99.9 2.4E-23 5.2E-28 194.4 15.9 155 103-275 4-164 (444)
13 COG1084 Predicted GTPase [Gene 99.9 1.8E-23 4E-28 187.3 12.5 196 64-274 129-334 (346)
14 TIGR00436 era GTP-binding prot 99.9 1.4E-22 3E-27 183.4 18.0 162 104-280 2-168 (270)
15 COG1159 Era GTPase [General fu 99.9 1.3E-22 2.9E-27 180.2 16.0 166 104-283 8-179 (298)
16 cd01881 Obg_like The Obg-like 99.9 5.4E-23 1.2E-27 172.9 12.5 160 107-273 1-174 (176)
17 PF02421 FeoB_N: Ferrous iron 99.9 2.1E-23 4.5E-28 172.3 8.3 150 103-270 1-155 (156)
18 COG1163 DRG Predicted GTPase [ 99.9 1.1E-22 2.3E-27 181.8 12.7 162 103-276 64-289 (365)
19 cd01899 Ygr210 Ygr210 subfamil 99.9 3.7E-22 8.1E-27 183.6 15.8 173 105-278 1-271 (318)
20 cd01897 NOG NOG1 is a nucleola 99.9 9.9E-22 2.1E-26 164.4 16.0 161 103-275 1-167 (168)
21 COG0486 ThdF Predicted GTPase 99.9 2.1E-22 4.6E-27 188.6 11.2 174 79-276 200-376 (454)
22 PRK09602 translation-associate 99.9 1.7E-21 3.6E-26 184.4 16.0 175 103-278 2-273 (396)
23 KOG0084 GTPase Rab1/YPT1, smal 99.9 8E-22 1.7E-26 164.6 11.3 164 98-278 5-174 (205)
24 PRK15494 era GTPase Era; Provi 99.9 5.6E-21 1.2E-25 178.1 17.5 166 102-283 52-223 (339)
25 PTZ00258 GTP-binding protein; 99.9 2.7E-21 5.8E-26 181.4 15.2 115 100-214 19-152 (390)
26 cd01896 DRG The developmentall 99.9 3.4E-21 7.3E-26 170.7 14.7 160 103-276 1-226 (233)
27 cd04142 RRP22 RRP22 subfamily. 99.9 1.2E-20 2.7E-25 163.1 15.7 169 103-277 1-175 (198)
28 cd01861 Rab6 Rab6 subfamily. 99.9 1.6E-20 3.4E-25 155.9 15.4 157 103-274 1-160 (161)
29 cd01878 HflX HflX subfamily. 99.9 1.7E-20 3.7E-25 162.5 16.1 160 99-273 38-202 (204)
30 COG0012 Predicted GTPase, prob 99.9 6.4E-21 1.4E-25 174.6 13.2 97 103-199 3-109 (372)
31 cd01864 Rab19 Rab19 subfamily. 99.9 1.3E-20 2.9E-25 157.4 14.1 158 102-274 3-164 (165)
32 cd04136 Rap_like Rap-like subf 99.8 1.9E-20 4.1E-25 155.6 14.4 156 103-274 2-161 (163)
33 cd01868 Rab11_like Rab11-like. 99.8 1.4E-20 3.1E-25 157.0 13.6 158 102-274 3-163 (165)
34 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 2.1E-20 4.6E-25 161.8 14.2 163 103-277 1-169 (201)
35 PRK00089 era GTPase Era; Revie 99.8 5.6E-20 1.2E-24 168.2 17.5 162 104-279 7-174 (292)
36 cd01865 Rab3 Rab3 subfamily. 99.8 2.5E-20 5.4E-25 156.0 13.9 158 103-275 2-162 (165)
37 cd04120 Rab12 Rab12 subfamily. 99.8 2.8E-20 6.2E-25 161.2 14.7 156 104-275 2-162 (202)
38 cd04109 Rab28 Rab28 subfamily. 99.8 3.6E-20 7.8E-25 162.1 15.5 163 103-277 1-167 (215)
39 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.5E-20 5.4E-25 155.7 13.7 153 104-273 1-166 (167)
40 TIGR03594 GTPase_EngA ribosome 99.8 5.4E-20 1.2E-24 177.0 17.5 160 102-275 172-343 (429)
41 cd01894 EngA1 EngA1 subfamily. 99.8 3.4E-20 7.4E-25 152.6 13.9 151 106-274 1-156 (157)
42 cd04158 ARD1 ARD1 subfamily. 99.8 3.1E-20 6.7E-25 156.3 13.8 154 104-277 1-162 (169)
43 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 2.6E-20 5.7E-25 155.7 13.3 159 102-275 2-163 (166)
44 cd01867 Rab8_Rab10_Rab13_like 99.8 4.4E-20 9.5E-25 154.8 14.6 159 102-275 3-164 (167)
45 cd04138 H_N_K_Ras_like H-Ras/N 99.8 6.8E-20 1.5E-24 151.6 15.5 157 103-274 2-160 (162)
46 PRK09601 GTP-binding protein Y 99.8 3.2E-20 6.9E-25 172.3 14.8 111 103-213 3-132 (364)
47 cd04122 Rab14 Rab14 subfamily. 99.8 2.8E-20 6.2E-25 155.7 13.1 157 103-275 3-163 (166)
48 PRK03003 GTP-binding protein D 99.8 5.6E-20 1.2E-24 178.7 17.0 187 101-301 210-407 (472)
49 cd04119 RJL RJL (RabJ-Like) su 99.8 7.9E-20 1.7E-24 152.1 15.4 160 103-275 1-166 (168)
50 PRK05291 trmE tRNA modificatio 99.8 1.5E-20 3.2E-25 181.3 12.3 157 98-275 211-369 (449)
51 cd01866 Rab2 Rab2 subfamily. 99.8 7.3E-20 1.6E-24 153.7 15.0 159 102-275 4-165 (168)
52 cd04112 Rab26 Rab26 subfamily. 99.8 4.4E-20 9.4E-25 158.5 13.7 160 103-277 1-164 (191)
53 cd04157 Arl6 Arl6 subfamily. 99.8 6.5E-20 1.4E-24 152.2 14.3 153 104-273 1-161 (162)
54 cd04124 RabL2 RabL2 subfamily. 99.8 5.4E-20 1.2E-24 153.5 13.6 153 103-275 1-157 (161)
55 cd04121 Rab40 Rab40 subfamily. 99.8 6.3E-20 1.4E-24 157.5 14.4 157 101-275 5-166 (189)
56 cd04113 Rab4 Rab4 subfamily. 99.8 1.1E-19 2.3E-24 151.1 15.1 157 103-274 1-160 (161)
57 cd01879 FeoB Ferrous iron tran 99.8 5.1E-20 1.1E-24 152.0 12.9 151 107-274 1-155 (158)
58 cd04175 Rap1 Rap1 subgroup. T 99.8 8E-20 1.7E-24 152.5 14.1 156 103-274 2-161 (164)
59 cd04150 Arf1_5_like Arf1-Arf5- 99.8 1.3E-19 2.8E-24 151.1 15.2 151 103-273 1-158 (159)
60 cd04145 M_R_Ras_like M-Ras/R-R 99.8 1.6E-19 3.6E-24 150.1 15.8 157 103-274 3-162 (164)
61 cd04114 Rab30 Rab30 subfamily. 99.8 8.1E-20 1.8E-24 152.9 14.0 160 100-274 5-167 (169)
62 cd01863 Rab18 Rab18 subfamily. 99.8 1.9E-19 4E-24 149.5 15.3 155 103-273 1-159 (161)
63 KOG0078 GTP-binding protein SE 99.8 1.1E-19 2.4E-24 153.7 14.0 160 99-276 9-174 (207)
64 cd04140 ARHI_like ARHI subfami 99.8 1.1E-19 2.4E-24 152.0 13.8 157 103-273 2-162 (165)
65 cd04149 Arf6 Arf6 subfamily. 99.8 9.7E-20 2.1E-24 153.3 13.5 152 102-273 9-167 (168)
66 PRK03003 GTP-binding protein D 99.8 9.7E-20 2.1E-24 177.1 15.3 159 100-276 36-199 (472)
67 smart00173 RAS Ras subfamily o 99.8 1.3E-19 2.8E-24 150.9 13.9 158 103-275 1-161 (164)
68 cd04144 Ras2 Ras2 subfamily. 99.8 6.8E-20 1.5E-24 157.2 12.5 159 104-276 1-163 (190)
69 cd01874 Cdc42 Cdc42 subfamily. 99.8 1E-19 2.2E-24 154.3 13.4 155 103-274 2-173 (175)
70 cd04101 RabL4 RabL4 (Rab-like4 99.8 1.4E-19 3.1E-24 150.7 14.0 157 103-274 1-162 (164)
71 cd04171 SelB SelB subfamily. 99.8 4.1E-19 8.8E-24 147.4 16.6 150 104-272 2-162 (164)
72 cd04106 Rab23_lke Rab23-like s 99.8 1.8E-19 4E-24 149.6 14.4 157 103-273 1-160 (162)
73 smart00175 RAB Rab subfamily o 99.8 2.3E-19 5.1E-24 149.0 15.0 158 103-275 1-161 (164)
74 cd04154 Arl2 Arl2 subfamily. 99.8 1.7E-19 3.6E-24 152.2 14.3 151 103-273 15-172 (173)
75 cd04117 Rab15 Rab15 subfamily. 99.8 2.1E-19 4.7E-24 149.9 14.6 153 103-273 1-159 (161)
76 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 2E-19 4.3E-24 152.1 14.6 152 102-273 15-173 (174)
77 COG1160 Predicted GTPases [Gen 99.8 1.1E-19 2.4E-24 169.9 14.1 185 101-300 177-375 (444)
78 cd04116 Rab9 Rab9 subfamily. 99.8 3.4E-19 7.3E-24 149.5 15.8 160 102-274 5-169 (170)
79 PRK00093 GTP-binding protein D 99.8 2.7E-19 5.9E-24 172.5 17.2 160 101-275 172-343 (435)
80 PLN00223 ADP-ribosylation fact 99.8 1.8E-19 4E-24 153.5 14.3 154 102-275 17-177 (181)
81 cd00879 Sar1 Sar1 subfamily. 99.8 2.2E-19 4.7E-24 153.6 14.7 153 102-274 19-189 (190)
82 cd04176 Rap2 Rap2 subgroup. T 99.8 2.1E-19 4.6E-24 149.6 14.2 157 103-275 2-162 (163)
83 cd04146 RERG_RasL11_like RERG/ 99.8 1.2E-19 2.6E-24 151.6 12.8 157 104-274 1-162 (165)
84 cd01895 EngA2 EngA2 subfamily. 99.8 6.5E-19 1.4E-23 147.0 17.2 157 103-273 3-172 (174)
85 KOG0092 GTPase Rab5/YPT51 and 99.8 4.3E-20 9.4E-25 153.6 9.8 159 102-280 5-171 (200)
86 cd04151 Arl1 Arl1 subfamily. 99.8 2.3E-19 4.9E-24 149.0 14.0 149 104-273 1-157 (158)
87 smart00178 SAR Sar1p-like memb 99.8 2.2E-19 4.7E-24 153.4 14.2 154 101-274 16-183 (184)
88 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.6E-19 3.6E-24 148.4 12.9 152 103-274 2-155 (157)
89 cd00877 Ran Ran (Ras-related n 99.8 1.9E-19 4.1E-24 151.2 13.3 157 103-276 1-159 (166)
90 cd04127 Rab27A Rab27a subfamil 99.8 2.4E-19 5.3E-24 151.8 13.9 166 102-275 4-176 (180)
91 cd04133 Rop_like Rop subfamily 99.8 2.2E-19 4.8E-24 152.4 13.6 155 103-275 2-172 (176)
92 cd00154 Rab Rab family. Rab G 99.8 5.4E-19 1.2E-23 144.9 15.6 155 103-272 1-158 (159)
93 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2E-19 4.4E-24 172.8 15.0 159 98-275 199-359 (442)
94 cd04126 Rab20 Rab20 subfamily. 99.8 1.7E-19 3.6E-24 158.3 13.2 154 103-276 1-190 (220)
95 cd04123 Rab21 Rab21 subfamily. 99.8 5E-19 1.1E-23 146.4 15.3 157 103-274 1-160 (162)
96 cd00878 Arf_Arl Arf (ADP-ribos 99.8 3.6E-19 7.9E-24 147.4 14.2 150 104-273 1-157 (158)
97 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 9.7E-19 2.1E-23 146.0 16.8 155 103-275 1-165 (168)
98 PRK04213 GTP-binding protein; 99.8 8.9E-19 1.9E-23 151.3 17.1 158 102-277 9-193 (201)
99 PLN03071 GTP-binding nuclear p 99.8 2.9E-19 6.2E-24 157.0 14.1 157 102-277 13-173 (219)
100 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 5.4E-19 1.2E-23 149.0 15.1 159 103-276 1-165 (170)
101 cd04110 Rab35 Rab35 subfamily. 99.8 2.4E-19 5.3E-24 155.0 13.2 158 102-277 6-168 (199)
102 cd01862 Rab7 Rab7 subfamily. 99.8 4.7E-19 1E-23 148.4 14.5 161 103-276 1-167 (172)
103 smart00177 ARF ARF-like small 99.8 3.8E-19 8.1E-24 150.7 14.0 154 102-275 13-173 (175)
104 cd04111 Rab39 Rab39 subfamily. 99.8 3.8E-19 8.3E-24 155.3 14.4 159 103-275 3-165 (211)
105 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 4E-19 8.6E-24 157.0 14.4 157 102-275 13-187 (232)
106 cd01892 Miro2 Miro2 subfamily. 99.8 2.4E-19 5.1E-24 151.0 12.4 159 100-275 2-165 (169)
107 PLN03110 Rab GTPase; Provision 99.8 3.3E-19 7.1E-24 156.2 13.8 159 101-275 11-173 (216)
108 cd01860 Rab5_related Rab5-rela 99.8 6.2E-19 1.3E-23 146.5 14.8 155 103-274 2-161 (163)
109 cd04131 Rnd Rnd subfamily. Th 99.8 3.2E-19 6.9E-24 151.7 13.1 155 103-274 2-174 (178)
110 cd04161 Arl2l1_Arl13_like Arl2 99.8 3.8E-19 8.2E-24 149.4 13.4 150 104-273 1-166 (167)
111 PTZ00369 Ras-like protein; Pro 99.8 2.3E-19 4.9E-24 153.8 12.3 159 103-276 6-167 (189)
112 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 2.4E-19 5.2E-24 151.5 12.2 157 103-276 3-164 (172)
113 cd04115 Rab33B_Rab33A Rab33B/R 99.8 4.7E-19 1E-23 149.0 13.8 160 102-275 2-168 (170)
114 cd04125 RabA_like RabA-like su 99.8 4.4E-19 9.6E-24 151.7 13.8 159 103-276 1-162 (188)
115 cd01890 LepA LepA subfamily. 99.8 1.6E-18 3.4E-23 146.6 16.8 156 103-275 1-176 (179)
116 cd04134 Rho3 Rho3 subfamily. 99.8 3.5E-19 7.6E-24 152.7 12.8 158 103-277 1-175 (189)
117 PRK09518 bifunctional cytidyla 99.8 8.2E-19 1.8E-23 178.3 17.6 162 101-277 449-622 (712)
118 cd01893 Miro1 Miro1 subfamily. 99.8 8.9E-19 1.9E-23 146.8 14.7 154 104-275 2-163 (166)
119 cd04132 Rho4_like Rho4-like su 99.8 6.5E-19 1.4E-23 150.3 14.0 159 103-277 1-168 (187)
120 PLN03118 Rab family protein; P 99.8 4.7E-19 1E-23 154.5 13.3 163 101-278 13-179 (211)
121 cd00876 Ras Ras family. The R 99.8 1E-18 2.2E-23 144.2 14.6 156 104-274 1-159 (160)
122 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.2E-18 2.6E-23 144.5 15.0 151 104-273 1-159 (160)
123 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 7.1E-19 1.5E-23 150.1 13.9 155 102-273 5-177 (182)
124 cd01875 RhoG RhoG subfamily. 99.8 3.2E-19 6.9E-24 153.3 11.6 156 103-276 4-177 (191)
125 cd01871 Rac1_like Rac1-like su 99.8 6.5E-19 1.4E-23 149.1 13.3 154 103-273 2-172 (174)
126 cd04118 Rab24 Rab24 subfamily. 99.8 6.1E-19 1.3E-23 151.3 13.3 158 103-276 1-166 (193)
127 PRK00093 GTP-binding protein D 99.8 7.8E-19 1.7E-23 169.3 15.5 153 103-273 2-159 (435)
128 KOG0080 GTPase Rab18, small G 99.8 1.9E-19 4.1E-24 145.3 8.9 168 100-283 9-181 (209)
129 KOG0394 Ras-related GTPase [Ge 99.8 1.9E-19 4.2E-24 148.5 9.1 160 100-277 7-179 (210)
130 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 6.7E-19 1.5E-23 150.2 12.8 159 103-276 4-170 (183)
131 cd04139 RalA_RalB RalA/RalB su 99.8 1.7E-18 3.7E-23 143.6 14.8 158 103-275 1-161 (164)
132 cd04177 RSR1 RSR1 subgroup. R 99.8 1E-18 2.2E-23 146.6 13.5 158 103-275 2-163 (168)
133 TIGR03594 GTPase_EngA ribosome 99.8 8.4E-19 1.8E-23 168.7 14.6 154 104-275 1-159 (429)
134 cd04143 Rhes_like Rhes_like su 99.8 7.7E-19 1.7E-23 156.8 13.3 159 103-275 1-170 (247)
135 smart00174 RHO Rho (Ras homolo 99.8 7.7E-19 1.7E-23 147.8 12.6 154 105-275 1-171 (174)
136 cd04128 Spg1 Spg1p. Spg1p (se 99.8 1.6E-18 3.4E-23 147.9 14.5 156 103-276 1-166 (182)
137 cd04163 Era Era subfamily. Er 99.8 2.7E-18 5.8E-23 141.9 15.5 157 103-273 4-166 (168)
138 PTZ00133 ADP-ribosylation fact 99.8 1.1E-18 2.4E-23 148.8 13.5 154 102-275 17-177 (182)
139 PLN03108 Rab family protein; P 99.8 1.5E-18 3.3E-23 151.3 14.5 161 101-276 5-168 (210)
140 cd04103 Centaurin_gamma Centau 99.8 1.1E-18 2.5E-23 145.4 13.1 150 104-274 2-157 (158)
141 TIGR03598 GTPase_YsxC ribosome 99.8 1.9E-18 4.1E-23 146.8 14.3 147 101-264 17-178 (179)
142 cd04147 Ras_dva Ras-dva subfam 99.8 2.3E-18 4.9E-23 148.7 14.7 158 104-276 1-163 (198)
143 PF01926 MMR_HSR1: 50S ribosom 99.8 6.9E-19 1.5E-23 138.9 10.5 113 104-231 1-116 (116)
144 cd01900 YchF YchF subfamily. 99.8 5E-19 1.1E-23 159.4 10.7 114 105-218 1-133 (274)
145 cd01873 RhoBTB RhoBTB subfamil 99.8 1.3E-18 2.9E-23 150.0 13.0 155 103-273 3-193 (195)
146 cd04155 Arl3 Arl3 subfamily. 99.8 1.8E-18 4E-23 145.4 13.5 152 102-273 14-172 (173)
147 cd04135 Tc10 TC10 subfamily. 99.8 1.7E-18 3.7E-23 145.6 13.3 155 103-274 1-172 (174)
148 cd04148 RGK RGK subfamily. Th 99.8 1.7E-18 3.7E-23 152.2 13.4 156 103-275 1-162 (221)
149 KOG0087 GTPase Rab11/YPT3, sma 99.8 5.2E-19 1.1E-23 149.2 9.4 161 98-273 10-173 (222)
150 cd01889 SelB_euk SelB subfamil 99.8 5.1E-18 1.1E-22 145.8 15.4 160 103-275 1-185 (192)
151 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 3.7E-18 8E-23 142.3 13.5 161 102-278 22-187 (221)
152 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 4E-18 8.7E-23 149.7 14.4 156 103-275 2-175 (222)
153 PRK09518 bifunctional cytidyla 99.8 3.3E-18 7.1E-23 173.9 15.8 160 98-275 271-435 (712)
154 cd01870 RhoA_like RhoA-like su 99.8 2.6E-18 5.5E-23 144.7 12.5 156 103-275 2-174 (175)
155 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 3.6E-18 7.8E-23 143.1 13.1 147 105-272 2-162 (164)
156 cd04159 Arl10_like Arl10-like 99.8 4.6E-18 1E-22 139.6 13.5 151 104-273 1-158 (159)
157 KOG1491 Predicted GTP-binding 99.8 2.5E-18 5.4E-23 154.5 12.7 111 103-213 21-150 (391)
158 cd00157 Rho Rho (Ras homology) 99.8 4.7E-18 1E-22 142.2 13.6 154 103-273 1-170 (171)
159 PRK09554 feoB ferrous iron tra 99.8 5.7E-18 1.2E-22 172.0 16.7 156 103-274 4-166 (772)
160 cd04130 Wrch_1 Wrch-1 subfamil 99.8 3.7E-18 8E-23 144.0 12.8 153 103-272 1-170 (173)
161 KOG0095 GTPase Rab30, small G 99.8 2.3E-18 4.9E-23 137.5 10.6 160 99-275 4-168 (213)
162 PRK00454 engB GTP-binding prot 99.8 1.2E-17 2.7E-22 143.2 15.8 158 101-275 23-193 (196)
163 TIGR02528 EutP ethanolamine ut 99.8 4.3E-18 9.4E-23 138.6 12.1 137 104-272 2-141 (142)
164 TIGR00231 small_GTP small GTP- 99.8 1.1E-17 2.4E-22 136.4 14.5 155 103-272 2-160 (161)
165 KOG0098 GTPase Rab2, small G p 99.8 3.2E-18 7E-23 141.6 11.1 157 101-275 5-167 (216)
166 COG0218 Predicted GTPase [Gene 99.8 3.1E-17 6.6E-22 138.8 17.2 157 101-275 23-196 (200)
167 cd00881 GTP_translation_factor 99.8 2.3E-17 5.1E-22 140.0 16.3 151 104-275 1-186 (189)
168 cd04137 RheB Rheb (Ras Homolog 99.8 9.7E-18 2.1E-22 142.0 13.1 159 103-276 2-163 (180)
169 cd00880 Era_like Era (E. coli 99.8 2.4E-17 5.3E-22 134.5 14.8 154 107-273 1-161 (163)
170 smart00176 RAN Ran (Ras-relate 99.8 6.6E-18 1.4E-22 146.2 11.3 151 108-277 1-155 (200)
171 PF00071 Ras: Ras family; Int 99.7 8.9E-18 1.9E-22 139.5 10.4 154 104-274 1-159 (162)
172 PRK15467 ethanolamine utilizat 99.7 2.4E-17 5.2E-22 137.5 12.6 141 104-276 3-147 (158)
173 cd04129 Rho2 Rho2 subfamily. 99.7 2.3E-17 4.9E-22 141.2 12.6 156 103-275 2-172 (187)
174 COG0370 FeoB Fe2+ transport sy 99.7 4.4E-17 9.6E-22 158.9 14.5 155 103-275 4-163 (653)
175 KOG1423 Ras-like GTPase ERA [C 99.7 3.5E-17 7.5E-22 145.3 12.1 164 100-276 70-271 (379)
176 KOG0079 GTP-binding protein H- 99.7 1.3E-17 2.8E-22 133.0 8.0 159 99-275 5-168 (198)
177 KOG1191 Mitochondrial GTPase [ 99.7 9.8E-18 2.1E-22 157.1 8.3 168 98-274 264-448 (531)
178 TIGR00437 feoB ferrous iron tr 99.7 5E-17 1.1E-21 161.5 13.5 148 109-274 1-153 (591)
179 TIGR00487 IF-2 translation ini 99.7 1.1E-16 2.4E-21 158.4 15.8 152 100-273 85-247 (587)
180 KOG1486 GTP-binding protein DR 99.7 1.5E-17 3.2E-22 143.9 8.2 159 103-275 63-287 (364)
181 cd01891 TypA_BipA TypA (tyrosi 99.7 1.3E-16 2.9E-21 137.2 13.9 144 102-266 2-172 (194)
182 TIGR00092 GTP-binding protein 99.7 6.1E-17 1.3E-21 150.5 12.0 116 103-218 3-138 (368)
183 KOG0091 GTPase Rab39, small G 99.7 4.7E-17 1E-21 131.9 9.6 156 102-275 8-172 (213)
184 cd04166 CysN_ATPS CysN_ATPS su 99.7 1E-16 2.3E-21 139.6 12.5 144 104-267 1-185 (208)
185 PF00025 Arf: ADP-ribosylation 99.7 2.8E-17 6E-22 139.4 8.6 153 101-273 13-173 (175)
186 KOG0093 GTPase Rab3, small G p 99.7 1.9E-16 4.2E-21 126.2 12.6 163 98-275 17-182 (193)
187 PF00009 GTP_EFTU: Elongation 99.7 2.1E-16 4.6E-21 135.4 13.2 155 101-274 2-185 (188)
188 PRK05306 infB translation init 99.7 2.8E-16 6.1E-21 159.2 15.7 151 100-273 288-449 (787)
189 KOG0073 GTP-binding ADP-ribosy 99.7 2.2E-16 4.8E-21 128.1 11.6 156 102-276 16-178 (185)
190 KOG0086 GTPase Rab4, small G p 99.7 1.5E-16 3.4E-21 127.5 10.5 158 99-273 6-168 (214)
191 cd01888 eIF2_gamma eIF2-gamma 99.7 7.6E-16 1.6E-20 133.6 15.4 160 104-275 2-198 (203)
192 CHL00189 infB translation init 99.7 5.5E-16 1.2E-20 155.9 15.4 156 100-274 242-408 (742)
193 KOG0088 GTPase Rab21, small G 99.7 2.6E-17 5.6E-22 132.7 4.5 163 102-279 13-178 (218)
194 TIGR01393 lepA GTP-binding pro 99.7 1.2E-15 2.5E-20 151.7 16.4 158 101-275 2-179 (595)
195 PF10662 PduV-EutP: Ethanolami 99.7 1.6E-15 3.4E-20 123.0 14.1 138 103-272 2-142 (143)
196 cd01876 YihA_EngB The YihA (En 99.7 1.5E-15 3.3E-20 125.7 14.2 153 104-273 1-168 (170)
197 KOG1490 GTP-binding protein CR 99.7 8.9E-17 1.9E-21 150.7 6.8 163 101-276 167-341 (620)
198 PTZ00132 GTP-binding nuclear p 99.7 1.4E-15 3E-20 133.0 13.9 158 103-277 10-169 (215)
199 cd00882 Ras_like_GTPase Ras-li 99.7 9E-16 1.9E-20 123.6 11.2 152 107-272 1-156 (157)
200 KOG0410 Predicted GTP binding 99.7 3.7E-16 8.1E-21 139.7 9.0 162 96-273 172-338 (410)
201 cd01884 EF_Tu EF-Tu subfamily. 99.6 4.7E-15 1E-19 127.8 15.5 141 103-264 3-171 (195)
202 cd04102 RabL3 RabL3 (Rab-like3 99.6 3.1E-15 6.7E-20 129.6 14.1 124 103-237 1-144 (202)
203 TIGR00475 selB selenocysteine- 99.6 3.4E-15 7.5E-20 148.2 15.8 151 104-275 2-165 (581)
204 PF08477 Miro: Miro-like prote 99.6 2.2E-16 4.7E-21 124.6 5.8 115 104-233 1-119 (119)
205 KOG0075 GTP-binding ADP-ribosy 99.6 6E-16 1.3E-20 123.3 7.7 158 98-274 16-180 (186)
206 PLN00023 GTP-binding protein; 99.6 5.1E-15 1.1E-19 135.3 14.7 127 102-237 21-166 (334)
207 cd04105 SR_beta Signal recogni 99.6 5.8E-15 1.3E-19 128.1 13.8 121 103-237 1-124 (203)
208 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 6.9E-15 1.5E-19 126.8 13.8 162 104-275 2-183 (196)
209 TIGR00491 aIF-2 translation in 99.6 1.6E-14 3.5E-19 142.9 17.5 122 102-236 4-135 (590)
210 PRK12317 elongation factor 1-a 99.6 3.9E-15 8.4E-20 143.2 12.6 147 102-268 6-197 (425)
211 cd01883 EF1_alpha Eukaryotic e 99.6 7.7E-15 1.7E-19 128.8 12.5 142 104-265 1-194 (219)
212 PRK05433 GTP-binding protein L 99.6 2.8E-14 6E-19 142.1 17.3 159 100-275 5-183 (600)
213 cd01886 EF-G Elongation factor 99.6 8.2E-15 1.8E-19 132.5 12.2 125 104-249 1-145 (270)
214 COG3596 Predicted GTPase [Gene 99.6 1.7E-14 3.6E-19 127.2 13.2 164 100-275 37-221 (296)
215 PRK09866 hypothetical protein; 99.6 7.7E-14 1.7E-18 136.1 18.6 113 157-275 230-352 (741)
216 KOG0070 GTP-binding ADP-ribosy 99.6 9E-15 1.9E-19 121.5 9.7 155 101-275 16-177 (181)
217 KOG0395 Ras-related GTPase [Ge 99.6 1.1E-14 2.4E-19 125.4 10.5 160 102-277 3-166 (196)
218 cd04168 TetM_like Tet(M)-like 99.6 4.5E-14 9.8E-19 125.4 14.5 125 104-249 1-145 (237)
219 cd04169 RF3 RF3 subfamily. Pe 99.6 1.9E-14 4.2E-19 129.9 12.2 126 102-248 2-151 (267)
220 PRK10218 GTP-binding protein; 99.6 5.5E-14 1.2E-18 139.6 16.3 155 100-275 3-194 (607)
221 cd04170 EF-G_bact Elongation f 99.6 1.4E-14 2.9E-19 131.1 10.9 151 104-275 1-172 (268)
222 TIGR01394 TypA_BipA GTP-bindin 99.6 7.5E-14 1.6E-18 138.7 16.5 152 103-275 2-190 (594)
223 PRK04004 translation initiatio 99.6 1.2E-13 2.6E-18 137.1 17.8 121 102-235 6-136 (586)
224 PRK10512 selenocysteinyl-tRNA- 99.6 8.7E-14 1.9E-18 138.8 16.8 152 104-275 2-165 (614)
225 COG1100 GTPase SAR1 and relate 99.6 1E-13 2.2E-18 121.0 14.6 157 103-275 6-184 (219)
226 CHL00071 tufA elongation facto 99.5 1E-13 2.3E-18 132.5 15.5 140 102-262 12-179 (409)
227 TIGR00483 EF-1_alpha translati 99.5 6.7E-14 1.5E-18 134.7 13.6 148 101-268 6-199 (426)
228 KOG0083 GTPase Rab26/Rab37, sm 99.5 1.2E-15 2.7E-20 119.7 1.1 156 107-277 2-161 (192)
229 cd04165 GTPBP1_like GTPBP1-lik 99.5 2.9E-13 6.3E-18 119.2 16.3 103 157-272 84-219 (224)
230 cd01885 EF2 EF2 (for archaea a 99.5 1.8E-13 3.9E-18 120.2 14.6 117 104-235 2-138 (222)
231 TIGR03680 eif2g_arch translati 99.5 9.1E-14 2E-18 132.8 13.8 161 103-275 5-195 (406)
232 PF09439 SRPRB: Signal recogni 99.5 3.2E-14 7E-19 120.2 9.1 123 103-238 4-128 (181)
233 PRK12736 elongation factor Tu; 99.5 1.9E-13 4.2E-18 130.1 15.5 155 100-275 10-200 (394)
234 cd01853 Toc34_like Toc34-like 99.5 8.5E-14 1.8E-18 124.3 11.9 130 98-237 27-164 (249)
235 KOG0081 GTPase Rab27, small G 99.5 1.1E-14 2.3E-19 117.7 5.2 163 100-274 7-179 (219)
236 cd04167 Snu114p Snu114p subfam 99.5 2E-13 4.3E-18 119.3 13.4 117 103-235 1-136 (213)
237 KOG0097 GTPase Rab14, small G 99.5 7.4E-14 1.6E-18 110.7 9.3 157 99-273 8-170 (215)
238 PRK12735 elongation factor Tu; 99.5 2.5E-13 5.3E-18 129.5 14.3 154 100-274 10-201 (396)
239 PRK04000 translation initiatio 99.5 2.3E-13 5E-18 130.2 13.7 162 102-275 9-200 (411)
240 KOG3883 Ras family small GTPas 99.5 6.7E-13 1.4E-17 106.7 13.5 167 101-279 8-178 (198)
241 COG0532 InfB Translation initi 99.5 3.8E-13 8.3E-18 128.2 14.2 154 102-275 5-169 (509)
242 cd04104 p47_IIGP_like p47 (47- 99.5 5.6E-13 1.2E-17 115.1 13.9 152 103-275 2-183 (197)
243 COG2229 Predicted GTPase [Gene 99.5 1.3E-12 2.8E-17 108.6 14.9 154 101-274 9-176 (187)
244 KOG0076 GTP-binding ADP-ribosy 99.5 1.3E-13 2.9E-18 113.1 8.6 160 99-275 14-186 (197)
245 PRK05124 cysN sulfate adenylyl 99.5 3.8E-13 8.2E-18 130.7 13.1 148 100-267 25-216 (474)
246 KOG0071 GTP-binding ADP-ribosy 99.5 5.1E-13 1.1E-17 105.9 11.2 153 102-276 17-178 (180)
247 PRK05506 bifunctional sulfate 99.5 4E-13 8.6E-18 135.3 13.5 147 100-266 22-211 (632)
248 PRK00049 elongation factor Tu; 99.5 7.5E-13 1.6E-17 126.1 14.6 153 100-273 10-200 (396)
249 PLN03127 Elongation factor Tu; 99.5 1.3E-12 2.9E-17 125.9 16.5 119 100-239 59-194 (447)
250 TIGR00485 EF-Tu translation el 99.5 8.6E-13 1.9E-17 125.7 14.6 142 100-262 10-179 (394)
251 TIGR00484 EF-G translation elo 99.5 7.1E-13 1.5E-17 134.6 14.6 117 100-237 8-142 (689)
252 KOG1145 Mitochondrial translat 99.5 1.2E-12 2.6E-17 124.4 14.8 155 98-274 149-314 (683)
253 TIGR02034 CysN sulfate adenyly 99.5 1.1E-12 2.4E-17 125.3 14.4 143 104-266 2-187 (406)
254 TIGR00991 3a0901s02IAP34 GTP-b 99.5 6.1E-13 1.3E-17 121.0 11.7 128 100-236 36-167 (313)
255 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 5.1E-13 1.1E-17 117.6 9.6 159 104-275 1-175 (232)
256 PF00350 Dynamin_N: Dynamin fa 99.4 7.8E-13 1.7E-17 110.7 10.4 120 105-232 1-168 (168)
257 cd01850 CDC_Septin CDC/Septin. 99.4 2.7E-12 5.7E-17 116.5 14.6 140 103-255 5-179 (276)
258 KOG4252 GTP-binding protein [S 99.4 8.8E-14 1.9E-18 114.6 4.2 160 98-276 16-181 (246)
259 PLN03126 Elongation factor Tu; 99.4 1.9E-12 4.2E-17 125.5 14.3 133 100-253 79-232 (478)
260 KOG0393 Ras-related small GTPa 99.4 2.8E-13 6E-18 115.2 7.0 160 102-277 4-180 (198)
261 KOG0074 GTP-binding ADP-ribosy 99.4 5.4E-13 1.2E-17 105.9 8.1 154 102-275 17-178 (185)
262 KOG0462 Elongation factor-type 99.4 1.8E-12 3.8E-17 123.3 12.6 160 98-275 56-234 (650)
263 PRK00007 elongation factor G; 99.4 1.6E-12 3.5E-17 132.0 13.4 117 100-237 8-142 (693)
264 TIGR00503 prfC peptide chain r 99.4 3.3E-12 7E-17 125.5 15.0 130 98-248 7-160 (527)
265 PRK12739 elongation factor G; 99.4 2.1E-12 4.6E-17 131.2 14.1 117 100-237 6-140 (691)
266 PRK00741 prfC peptide chain re 99.4 1.9E-12 4.2E-17 127.0 12.9 130 98-248 6-159 (526)
267 COG0481 LepA Membrane GTPase L 99.4 2E-12 4.4E-17 121.1 11.0 161 98-276 5-186 (603)
268 PRK13768 GTPase; Provisional 99.4 3.3E-12 7E-17 114.6 10.9 114 157-275 97-246 (253)
269 PRK13351 elongation factor G; 99.4 5.4E-12 1.2E-16 128.3 13.5 128 100-248 6-153 (687)
270 KOG1532 GTPase XAB1, interacts 99.4 2.9E-12 6.2E-17 112.7 9.6 114 158-278 117-266 (366)
271 PTZ00141 elongation factor 1- 99.4 8.7E-12 1.9E-16 120.4 13.7 143 103-266 8-203 (446)
272 smart00053 DYNc Dynamin, GTPas 99.4 1.8E-11 3.8E-16 108.5 14.0 134 100-238 24-208 (240)
273 KOG0090 Signal recognition par 99.3 7.2E-12 1.6E-16 106.4 10.8 118 103-238 39-161 (238)
274 PTZ00099 rab6; Provisional 99.3 4E-12 8.7E-17 107.9 9.4 111 158-277 30-143 (176)
275 KOG0077 Vesicle coat complex C 99.3 9.3E-12 2E-16 101.6 10.2 121 99-238 17-137 (193)
276 TIGR02836 spore_IV_A stage IV 99.3 1.8E-11 3.9E-16 114.2 12.8 125 103-235 18-193 (492)
277 PTZ00327 eukaryotic translatio 99.3 2.4E-11 5.2E-16 117.3 13.9 161 103-275 35-232 (460)
278 KOG1487 GTP-binding protein DR 99.3 1.9E-12 4E-17 112.9 5.2 122 103-234 60-181 (358)
279 PF04548 AIG1: AIG1 family; I 99.3 2.2E-11 4.8E-16 106.4 11.8 125 104-238 2-132 (212)
280 PF01018 GTP1_OBG: GTP1/OBG; 99.3 9.4E-13 2E-17 108.7 2.4 70 18-100 84-155 (156)
281 KOG1954 Endocytosis/signaling 99.3 4.9E-11 1.1E-15 108.8 11.7 148 99-251 55-240 (532)
282 COG4917 EutP Ethanolamine util 99.3 4.9E-11 1.1E-15 93.1 9.9 140 103-274 2-144 (148)
283 PLN00043 elongation factor 1-a 99.3 5.3E-11 1.1E-15 114.9 12.2 145 102-266 7-203 (447)
284 cd01882 BMS1 Bms1. Bms1 is an 99.2 1.4E-10 3E-15 102.3 13.9 109 101-238 38-149 (225)
285 PF03029 ATP_bind_1: Conserved 99.2 5.8E-12 1.3E-16 111.8 4.9 110 158-271 92-232 (238)
286 TIGR00993 3a0901s04IAP86 chlor 99.2 7.9E-11 1.7E-15 115.6 12.2 128 99-236 115-250 (763)
287 PTZ00416 elongation factor 2; 99.2 9.5E-11 2.1E-15 121.2 13.4 123 100-235 17-157 (836)
288 PLN00116 translation elongatio 99.2 8.5E-11 1.8E-15 121.7 12.9 121 100-235 17-163 (843)
289 TIGR00490 aEF-2 translation el 99.2 4.7E-11 1E-15 121.8 10.3 120 100-236 17-152 (720)
290 KOG1707 Predicted Ras related/ 99.2 8.6E-11 1.9E-15 112.7 11.1 155 101-273 8-172 (625)
291 PRK12740 elongation factor G; 99.1 4.1E-10 8.8E-15 114.4 13.4 109 108-237 1-127 (668)
292 COG0480 FusA Translation elong 99.1 3.9E-10 8.4E-15 113.3 12.1 120 99-238 7-144 (697)
293 KOG0072 GTP-binding ADP-ribosy 99.1 1.2E-10 2.5E-15 93.0 6.2 153 103-275 19-178 (182)
294 COG5256 TEF1 Translation elong 99.1 5.2E-10 1.1E-14 103.9 11.2 146 103-268 8-203 (428)
295 PRK07560 elongation factor EF- 99.1 3E-10 6.5E-15 116.2 10.1 120 100-236 18-153 (731)
296 PRK14845 translation initiatio 99.1 1.4E-09 3E-14 113.4 14.4 147 114-273 473-670 (1049)
297 PF00735 Septin: Septin; Inte 99.1 7.6E-10 1.6E-14 100.6 10.7 139 103-254 5-177 (281)
298 PF05049 IIGP: Interferon-indu 99.1 3.5E-10 7.5E-15 105.6 8.0 156 101-277 34-219 (376)
299 PRK09435 membrane ATPase/prote 99.1 1.9E-09 4.1E-14 99.8 12.4 97 158-274 150-258 (332)
300 cd04178 Nucleostemin_like Nucl 99.1 3E-10 6.6E-15 95.9 6.4 56 101-167 116-172 (172)
301 COG1217 TypA Predicted membran 99.0 3.8E-09 8.3E-14 99.2 12.2 128 101-249 4-149 (603)
302 cd01858 NGP_1 NGP-1. Autoanti 99.0 7E-10 1.5E-14 92.1 6.1 54 103-167 103-157 (157)
303 KOG1144 Translation initiation 99.0 4.6E-09 1E-13 103.1 11.6 159 102-273 475-684 (1064)
304 TIGR00750 lao LAO/AO transport 99.0 4.8E-09 1E-13 96.5 10.7 99 157-275 127-237 (300)
305 COG5019 CDC3 Septin family pro 98.9 1.6E-08 3.4E-13 93.0 12.9 146 103-255 24-198 (373)
306 KOG1547 Septin CDC10 and relat 98.9 1.6E-08 3.4E-13 87.7 12.2 141 103-255 47-220 (336)
307 cd01855 YqeH YqeH. YqeH is an 98.9 2.4E-09 5.1E-14 91.8 6.5 55 102-167 127-190 (190)
308 KOG0096 GTPase Ran/TC4/GSP1 (n 98.9 7.6E-10 1.6E-14 92.4 3.2 160 101-277 9-170 (216)
309 COG1161 Predicted GTPases [Gen 98.9 1.6E-09 3.6E-14 100.3 5.8 59 102-171 132-191 (322)
310 COG4108 PrfC Peptide chain rel 98.9 8.7E-09 1.9E-13 96.2 9.7 131 98-249 8-162 (528)
311 PRK09563 rbgA GTPase YlqF; Rev 98.9 5.5E-09 1.2E-13 95.5 8.1 61 101-172 120-181 (287)
312 cd01849 YlqF_related_GTPase Yl 98.8 5.5E-09 1.2E-13 86.6 6.5 56 101-167 99-155 (155)
313 KOG0461 Selenocysteine-specifi 98.8 8.1E-08 1.7E-12 87.4 14.2 159 103-277 8-194 (522)
314 KOG3886 GTP-binding protein [S 98.8 5.9E-09 1.3E-13 89.9 6.6 122 103-238 5-132 (295)
315 COG2895 CysN GTPases - Sulfate 98.8 1.7E-08 3.8E-13 92.0 9.9 148 100-267 4-194 (431)
316 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 6.4E-09 1.4E-13 84.8 6.3 54 104-168 85-139 (141)
317 COG3276 SelB Selenocysteine-sp 98.8 7.6E-08 1.6E-12 90.3 14.1 151 104-275 2-161 (447)
318 TIGR03596 GTPase_YlqF ribosome 98.8 9E-09 2E-13 93.5 7.8 58 102-170 118-176 (276)
319 TIGR00073 hypB hydrogenase acc 98.8 5.8E-08 1.3E-12 84.4 11.3 154 100-273 20-204 (207)
320 KOG4423 GTP-binding protein-li 98.8 2.8E-10 6.1E-15 94.6 -3.1 164 101-278 24-196 (229)
321 TIGR03597 GTPase_YqeH ribosome 98.8 1.2E-08 2.5E-13 96.2 7.2 118 102-236 154-280 (360)
322 KOG0458 Elongation factor 1 al 98.8 4.7E-08 1E-12 94.2 11.1 148 101-267 176-373 (603)
323 PF03308 ArgK: ArgK protein; 98.8 1.1E-08 2.3E-13 90.5 6.2 96 158-273 123-227 (266)
324 COG5257 GCD11 Translation init 98.8 7.4E-08 1.6E-12 86.9 11.5 165 103-278 11-204 (415)
325 KOG2655 Septin family protein 98.8 8.9E-08 1.9E-12 88.6 12.3 126 103-239 22-175 (366)
326 KOG0468 U5 snRNP-specific prot 98.8 1.9E-08 4E-13 98.0 8.1 119 101-235 127-262 (971)
327 COG1703 ArgK Putative periplas 98.7 1.8E-07 4E-12 83.9 12.7 96 158-273 145-251 (323)
328 COG0050 TufB GTPases - transla 98.7 1.1E-07 2.3E-12 85.0 10.8 133 101-254 11-164 (394)
329 KOG1424 Predicted GTP-binding 98.7 9.5E-09 2.1E-13 97.7 4.4 60 100-170 312-372 (562)
330 cd01856 YlqF YlqF. Proteins o 98.7 3.2E-08 7E-13 83.4 6.5 55 102-167 115-170 (171)
331 cd01851 GBP Guanylate-binding 98.7 1.1E-07 2.3E-12 83.8 10.0 92 102-199 7-103 (224)
332 KOG1673 Ras GTPases [General f 98.7 2.4E-08 5.3E-13 80.8 5.1 156 102-275 20-185 (205)
333 KOG2486 Predicted GTPase [Gene 98.7 1.2E-07 2.6E-12 84.1 9.4 157 100-273 134-313 (320)
334 PRK13796 GTPase YqeH; Provisio 98.7 2.6E-08 5.6E-13 94.0 5.4 58 102-170 160-223 (365)
335 TIGR00101 ureG urease accessor 98.7 2.7E-07 5.9E-12 79.8 11.2 98 158-275 93-195 (199)
336 PRK12288 GTPase RsgA; Reviewed 98.6 8.8E-08 1.9E-12 89.6 6.5 67 104-181 207-284 (347)
337 cd01859 MJ1464 MJ1464. This f 98.6 1.4E-07 3.1E-12 78.0 6.5 55 102-167 101-156 (156)
338 PRK10463 hydrogenase nickel in 98.5 4.1E-08 8.8E-13 89.0 2.9 52 222-273 230-286 (290)
339 PRK12289 GTPase RsgA; Reviewed 98.5 1.1E-07 2.5E-12 88.9 5.5 57 104-171 174-238 (352)
340 KOG0448 Mitofusin 1 GTPase, in 98.5 2.1E-06 4.4E-11 84.4 12.4 139 100-249 107-289 (749)
341 cd03112 CobW_like The function 98.5 3.8E-07 8.3E-12 75.9 6.5 66 157-234 87-158 (158)
342 TIGR00157 ribosome small subun 98.5 1E-06 2.2E-11 78.7 9.5 85 184-273 33-120 (245)
343 TIGR00157 ribosome small subun 98.5 2.1E-07 4.4E-12 83.2 5.0 57 103-171 121-185 (245)
344 PF03193 DUF258: Protein of un 98.4 1.7E-07 3.7E-12 77.9 4.0 58 103-171 36-101 (161)
345 KOG0465 Mitochondrial elongati 98.4 4.4E-07 9.6E-12 87.9 6.0 120 98-238 35-172 (721)
346 KOG2484 GTPase [General functi 98.3 3.6E-07 7.8E-12 84.7 3.8 64 98-172 248-312 (435)
347 PRK00098 GTPase RsgA; Reviewed 98.3 1.2E-06 2.7E-11 80.4 7.2 58 102-170 164-229 (298)
348 KOG0464 Elongation factor G [T 98.3 2.1E-07 4.5E-12 86.5 1.7 129 100-249 35-183 (753)
349 COG5192 BMS1 GTP-binding prote 98.3 1.6E-06 3.5E-11 83.4 7.7 121 103-250 70-191 (1077)
350 cd01859 MJ1464 MJ1464. This f 98.2 6E-06 1.3E-10 68.2 8.8 88 181-275 5-95 (156)
351 cd01858 NGP_1 NGP-1. Autoanti 98.2 3.9E-06 8.4E-11 69.6 7.6 88 182-274 3-93 (157)
352 KOG0467 Translation elongation 98.2 5.9E-06 1.3E-10 82.1 9.3 116 101-235 8-137 (887)
353 KOG2423 Nucleolar GTPase [Gene 98.2 7.5E-07 1.6E-11 82.4 3.0 60 101-171 306-366 (572)
354 KOG3859 Septins (P-loop GTPase 98.2 7.4E-06 1.6E-10 72.8 8.8 125 102-239 42-193 (406)
355 KOG1707 Predicted Ras related/ 98.2 2.4E-05 5.2E-10 75.9 13.0 154 100-277 423-584 (625)
356 cd01854 YjeQ_engC YjeQ/EngC. 98.2 2.1E-06 4.6E-11 78.4 5.6 58 103-171 162-227 (287)
357 KOG3905 Dynein light intermedi 98.2 3.3E-05 7.2E-10 70.2 12.4 165 98-273 48-287 (473)
358 COG1162 Predicted GTPases [Gen 98.1 3.3E-06 7.2E-11 76.5 5.5 58 103-171 165-230 (301)
359 cd01855 YqeH YqeH. YqeH is an 98.1 6.9E-06 1.5E-10 70.2 7.3 90 178-275 25-124 (190)
360 KOG3887 Predicted small GTPase 98.1 1E-05 2.3E-10 70.6 8.2 160 103-275 28-201 (347)
361 PRK10416 signal recognition pa 98.1 2.6E-05 5.6E-10 72.2 11.4 100 158-269 198-303 (318)
362 KOG2485 Conserved ATP/GTP bind 98.1 4.3E-06 9.4E-11 75.5 5.8 66 100-174 141-213 (335)
363 cd01856 YlqF YlqF. Proteins o 98.1 9.6E-06 2.1E-10 68.2 7.6 87 179-274 11-99 (171)
364 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 1.1E-05 2.3E-10 65.7 7.7 80 179-263 3-84 (141)
365 COG0378 HypB Ni2+-binding GTPa 98.1 3.4E-06 7.3E-11 71.5 4.7 75 190-274 120-199 (202)
366 PRK00098 GTPase RsgA; Reviewed 98.1 1.4E-05 3.1E-10 73.4 8.3 83 185-272 78-163 (298)
367 PRK12289 GTPase RsgA; Reviewed 98.1 2.1E-05 4.5E-10 73.8 9.3 83 185-273 87-172 (352)
368 KOG1533 Predicted GTPase [Gene 98.0 1.1E-05 2.3E-10 70.2 6.1 77 157-236 97-177 (290)
369 TIGR01425 SRP54_euk signal rec 98.0 8.5E-05 1.8E-09 71.2 12.8 96 158-267 184-281 (429)
370 TIGR03596 GTPase_YlqF ribosome 98.0 2.1E-05 4.5E-10 71.5 8.2 88 179-275 13-102 (276)
371 KOG0460 Mitochondrial translat 98.0 4.5E-05 9.8E-10 69.7 9.9 132 103-255 55-207 (449)
372 TIGR00064 ftsY signal recognit 98.0 8.4E-05 1.8E-09 67.4 11.7 97 158-268 156-260 (272)
373 TIGR03348 VI_IcmF type VI secr 98.0 2E-05 4.3E-10 84.9 8.8 132 98-237 107-258 (1169)
374 KOG0469 Elongation factor 2 [T 98.0 1.7E-05 3.6E-10 75.7 7.2 135 100-249 17-183 (842)
375 cd03110 Fer4_NifH_child This p 98.0 0.00025 5.5E-09 59.8 13.7 81 158-255 94-174 (179)
376 KOG1534 Putative transcription 98.0 6.5E-06 1.4E-10 70.4 3.7 79 156-237 97-179 (273)
377 cd03114 ArgK-like The function 98.0 0.00019 4.1E-09 59.1 12.1 56 158-233 93-148 (148)
378 smart00010 small_GTPase Small 97.9 4.4E-05 9.6E-10 59.7 7.9 115 103-265 1-115 (124)
379 cd01849 YlqF_related_GTPase Yl 97.9 4.3E-05 9.3E-10 63.1 7.8 79 189-274 1-83 (155)
380 PF02492 cobW: CobW/HypB/UreG, 97.9 2.9E-05 6.2E-10 65.9 6.6 84 158-251 86-170 (178)
381 PRK14722 flhF flagellar biosyn 97.9 4.5E-05 9.8E-10 71.9 8.4 161 100-269 135-325 (374)
382 PRK12727 flagellar biosynthesi 97.9 5.7E-05 1.2E-09 73.8 9.2 97 158-269 430-528 (559)
383 PRK09563 rbgA GTPase YlqF; Rev 97.9 3E-05 6.5E-10 70.9 7.0 97 163-274 6-104 (287)
384 cd01854 YjeQ_engC YjeQ/EngC. 97.9 5.7E-05 1.2E-09 69.0 8.3 83 185-273 76-161 (287)
385 KOG0447 Dynamin-like GTP bindi 97.8 0.00029 6.3E-09 68.1 12.4 143 101-249 307-507 (980)
386 PRK14974 cell division protein 97.8 0.00013 2.7E-09 68.1 9.7 98 158-269 224-323 (336)
387 PF00448 SRP54: SRP54-type pro 97.8 0.00013 2.9E-09 62.9 9.0 95 158-264 85-179 (196)
388 COG0523 Putative GTPases (G3E 97.8 0.00017 3.7E-09 66.8 10.2 82 158-252 86-174 (323)
389 PRK05703 flhF flagellar biosyn 97.8 0.00017 3.7E-09 69.4 10.5 99 158-270 301-402 (424)
390 PRK11889 flhF flagellar biosyn 97.8 0.00019 4E-09 67.9 9.9 99 158-270 322-422 (436)
391 TIGR02475 CobW cobalamin biosy 97.8 0.0001 2.2E-09 69.0 8.3 80 158-250 94-200 (341)
392 PRK12288 GTPase RsgA; Reviewed 97.7 0.00019 4E-09 67.4 9.8 83 186-273 119-205 (347)
393 PRK14721 flhF flagellar biosyn 97.7 0.00042 9.1E-09 66.4 11.9 97 158-269 271-370 (420)
394 KOG0082 G-protein alpha subuni 97.7 0.00016 3.5E-09 67.2 8.3 73 157-237 195-277 (354)
395 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00011 2.4E-09 49.8 5.4 43 188-233 14-58 (58)
396 COG3640 CooC CO dehydrogenase 97.7 0.00021 4.5E-09 62.5 8.4 44 186-235 154-198 (255)
397 PRK11537 putative GTP-binding 97.7 0.00013 2.9E-09 67.5 7.7 136 101-251 3-176 (318)
398 cd00066 G-alpha G protein alph 97.7 0.0001 2.3E-09 68.3 6.9 71 158-236 162-242 (317)
399 cd03115 SRP The signal recogni 97.6 0.00047 1E-08 57.9 10.0 71 158-237 84-154 (173)
400 PRK12724 flagellar biosynthesi 97.6 0.00034 7.4E-09 66.7 9.7 102 158-270 301-404 (432)
401 PRK12726 flagellar biosynthesi 97.6 0.00036 7.8E-09 65.7 9.3 95 158-266 287-383 (407)
402 TIGR03597 GTPase_YqeH ribosome 97.6 0.00013 2.8E-09 68.9 6.3 81 185-273 61-150 (360)
403 cd02038 FleN-like FleN is a me 97.6 0.0016 3.4E-08 52.8 11.9 106 107-235 5-110 (139)
404 KOG1143 Predicted translation 97.6 0.00022 4.7E-09 66.1 7.4 140 104-254 169-338 (591)
405 smart00275 G_alpha G protein a 97.6 0.00022 4.8E-09 66.8 7.7 71 158-236 185-265 (342)
406 PF05783 DLIC: Dynein light in 97.5 0.00071 1.5E-08 65.8 11.0 53 222-274 196-262 (472)
407 PRK01889 GTPase RsgA; Reviewed 97.5 8.6E-05 1.9E-09 69.9 4.3 27 100-126 193-219 (356)
408 cd03111 CpaE_like This protein 97.5 0.0018 3.9E-08 50.0 10.8 104 105-231 2-106 (106)
409 PRK14723 flhF flagellar biosyn 97.5 0.00056 1.2E-08 69.8 9.7 96 158-264 265-362 (767)
410 PRK13796 GTPase YqeH; Provisio 97.5 0.00032 7E-09 66.3 7.6 86 181-274 62-157 (365)
411 KOG0466 Translation initiation 97.5 0.00022 4.8E-09 64.4 5.7 110 157-277 125-242 (466)
412 PRK06731 flhF flagellar biosyn 97.5 0.00097 2.1E-08 60.3 9.9 99 158-270 156-256 (270)
413 COG1419 FlhF Flagellar GTP-bin 97.4 0.0012 2.6E-08 62.3 10.5 155 102-269 203-382 (407)
414 PRK06995 flhF flagellar biosyn 97.4 0.00069 1.5E-08 66.0 9.1 95 158-266 336-432 (484)
415 PRK12723 flagellar biosynthesi 97.4 0.0016 3.5E-08 61.9 11.3 99 158-269 256-356 (388)
416 PRK00771 signal recognition pa 97.4 0.00074 1.6E-08 65.1 9.2 95 158-266 177-273 (437)
417 COG5258 GTPBP1 GTPase [General 97.3 0.00099 2.2E-08 62.1 8.2 125 100-237 115-270 (527)
418 COG3523 IcmF Type VI protein s 97.3 0.00069 1.5E-08 71.9 7.7 130 100-237 123-271 (1188)
419 PF00004 AAA: ATPase family as 97.3 0.0008 1.7E-08 53.2 6.5 21 105-125 1-21 (132)
420 PRK14737 gmk guanylate kinase; 97.2 0.0004 8.7E-09 59.4 4.4 42 105-146 7-49 (186)
421 TIGR03263 guanyl_kin guanylate 97.2 0.00047 1E-08 58.1 4.7 40 104-143 3-43 (180)
422 PF07015 VirC1: VirC1 protein; 97.2 0.0046 1E-07 54.3 10.5 100 158-269 85-187 (231)
423 cd01983 Fer4_NifH The Fer4_Nif 97.1 0.0051 1.1E-07 45.4 9.4 73 105-203 2-74 (99)
424 cd02042 ParA ParA and ParB of 97.1 0.0052 1.1E-07 46.8 9.5 71 105-199 2-73 (104)
425 PRK10867 signal recognition pa 97.1 0.0029 6.3E-08 61.0 9.3 95 158-266 185-281 (433)
426 cd02036 MinD Bacterial cell di 97.1 0.019 4.1E-07 47.9 13.1 65 158-236 64-128 (179)
427 cd00071 GMPK Guanosine monopho 97.0 0.00086 1.9E-08 54.3 4.6 40 105-144 2-43 (137)
428 COG0194 Gmk Guanylate kinase [ 97.0 0.00039 8.6E-09 58.7 2.5 43 104-147 6-49 (191)
429 PRK01889 GTPase RsgA; Reviewed 97.0 0.0037 8.1E-08 58.9 9.0 82 186-272 111-193 (356)
430 TIGR00959 ffh signal recogniti 97.0 0.0049 1.1E-07 59.4 9.9 95 158-266 184-280 (428)
431 KOG2749 mRNA cleavage and poly 96.9 0.0069 1.5E-07 56.0 9.8 32 98-129 99-130 (415)
432 PF00005 ABC_tran: ABC transpo 96.9 0.00049 1.1E-08 55.2 2.1 30 97-126 6-35 (137)
433 COG1136 SalX ABC-type antimicr 96.9 0.00082 1.8E-08 58.9 3.6 32 95-126 24-55 (226)
434 COG1116 TauB ABC-type nitrate/ 96.9 0.00088 1.9E-08 59.2 3.7 29 98-126 25-53 (248)
435 KOG0705 GTPase-activating prot 96.9 0.0015 3.3E-08 63.2 5.5 153 103-277 31-190 (749)
436 PRK14738 gmk guanylate kinase; 96.8 0.0013 2.7E-08 57.2 4.1 41 104-144 15-56 (206)
437 PF05621 TniB: Bacterial TniB 96.8 0.012 2.6E-07 53.8 10.4 110 101-231 60-189 (302)
438 COG1126 GlnQ ABC-type polar am 96.8 0.0012 2.6E-08 57.2 3.8 33 94-126 20-52 (240)
439 COG1134 TagH ABC-type polysacc 96.8 0.0011 2.5E-08 58.2 3.3 34 93-126 44-77 (249)
440 PF09547 Spore_IV_A: Stage IV 96.7 0.014 3E-07 55.5 10.2 21 104-124 19-39 (492)
441 KOG2484 GTPase [General functi 96.7 0.0046 1E-07 57.9 7.0 72 176-252 135-206 (435)
442 cd03226 ABC_cobalt_CbiO_domain 96.7 0.0016 3.5E-08 56.2 3.8 32 95-126 19-50 (205)
443 cd03261 ABC_Org_Solvent_Resist 96.7 0.0017 3.6E-08 57.4 3.8 32 95-126 19-50 (235)
444 TIGR00960 3a0501s02 Type II (G 96.7 0.0017 3.7E-08 56.5 3.8 32 95-126 22-53 (216)
445 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.7 0.0017 3.8E-08 56.5 3.7 32 95-126 23-54 (218)
446 PF13555 AAA_29: P-loop contai 96.7 0.0019 4E-08 44.8 3.0 20 104-123 25-44 (62)
447 PRK00300 gmk guanylate kinase; 96.6 0.0024 5.2E-08 55.0 4.5 42 103-144 6-48 (205)
448 COG3840 ThiQ ABC-type thiamine 96.6 0.0015 3.2E-08 55.2 3.0 25 102-126 25-49 (231)
449 cd03264 ABC_drug_resistance_li 96.6 0.0016 3.4E-08 56.5 3.3 30 96-126 20-49 (211)
450 cd00009 AAA The AAA+ (ATPases 96.6 0.011 2.4E-07 46.7 8.0 24 103-126 20-43 (151)
451 cd03259 ABC_Carb_Solutes_like 96.6 0.002 4.3E-08 56.0 3.8 32 95-126 19-50 (213)
452 TIGR03608 L_ocin_972_ABC putat 96.6 0.0019 4.2E-08 55.6 3.6 31 96-126 18-48 (206)
453 COG3839 MalK ABC-type sugar tr 96.6 0.0016 3.5E-08 60.5 3.3 33 94-126 21-53 (338)
454 cd03224 ABC_TM1139_LivF_branch 96.6 0.0019 4E-08 56.4 3.5 32 95-126 19-50 (222)
455 cd03225 ABC_cobalt_CbiO_domain 96.6 0.0018 4E-08 56.0 3.4 30 97-126 22-51 (211)
456 KOG1424 Predicted GTP-binding 96.6 0.0043 9.4E-08 59.8 6.1 74 174-254 161-236 (562)
457 cd03269 ABC_putative_ATPase Th 96.6 0.0022 4.8E-08 55.5 3.8 32 95-126 19-50 (210)
458 cd03216 ABC_Carb_Monos_I This 96.6 0.0024 5.1E-08 53.3 3.8 32 95-126 19-50 (163)
459 cd03235 ABC_Metallic_Cations A 96.6 0.002 4.4E-08 55.9 3.5 32 95-126 18-49 (213)
460 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.0023 5E-08 52.2 3.6 32 95-126 19-50 (144)
461 cd03229 ABC_Class3 This class 96.6 0.0024 5.2E-08 53.9 3.8 32 95-126 19-50 (178)
462 TIGR01166 cbiO cobalt transpor 96.6 0.0022 4.8E-08 54.6 3.7 29 98-126 14-42 (190)
463 KOG0463 GTP-binding protein GP 96.6 0.015 3.2E-07 54.3 9.1 23 103-125 134-156 (641)
464 cd03292 ABC_FtsE_transporter F 96.6 0.0023 5.1E-08 55.5 3.8 31 96-126 21-51 (214)
465 PRK13540 cytochrome c biogenes 96.6 0.0024 5.2E-08 55.0 3.8 33 94-126 19-51 (200)
466 cd03257 ABC_NikE_OppD_transpor 96.5 0.0022 4.8E-08 56.2 3.7 32 95-126 24-55 (228)
467 PF13207 AAA_17: AAA domain; P 96.5 0.0019 4.1E-08 50.5 2.9 22 104-125 1-22 (121)
468 cd01130 VirB11-like_ATPase Typ 96.5 0.0026 5.5E-08 54.3 3.9 31 96-126 19-49 (186)
469 cd03263 ABC_subfamily_A The AB 96.5 0.0022 4.8E-08 55.9 3.5 31 96-126 22-52 (220)
470 TIGR02211 LolD_lipo_ex lipopro 96.5 0.0024 5.1E-08 55.8 3.7 31 96-126 25-55 (221)
471 cd03293 ABC_NrtD_SsuB_transpor 96.5 0.0024 5.2E-08 55.8 3.7 32 95-126 23-54 (220)
472 cd03238 ABC_UvrA The excision 96.5 0.0016 3.5E-08 55.1 2.5 29 96-124 15-43 (176)
473 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0027 5.9E-08 53.8 3.8 28 99-126 22-49 (177)
474 cd03218 ABC_YhbG The ABC trans 96.5 0.0025 5.4E-08 56.1 3.7 31 96-126 20-50 (232)
475 cd04178 Nucleostemin_like Nucl 96.5 0.0049 1.1E-07 52.0 5.3 58 189-251 1-58 (172)
476 cd03116 MobB Molybdenum is an 96.5 0.0024 5.1E-08 53.2 3.3 22 104-125 3-24 (159)
477 cd03262 ABC_HisP_GlnQ_permease 96.5 0.0025 5.4E-08 55.2 3.6 30 97-126 21-50 (213)
478 cd03301 ABC_MalK_N The N-termi 96.5 0.0026 5.7E-08 55.1 3.8 32 95-126 19-50 (213)
479 TIGR02315 ABC_phnC phosphonate 96.5 0.0026 5.7E-08 56.3 3.8 32 95-126 21-52 (243)
480 PRK11629 lolD lipoprotein tran 96.5 0.0028 6.1E-08 55.9 3.9 32 95-126 28-59 (233)
481 cd03214 ABC_Iron-Siderophores_ 96.5 0.0027 5.8E-08 53.7 3.6 32 95-126 18-49 (180)
482 PRK11248 tauB taurine transpor 96.5 0.0026 5.6E-08 57.1 3.7 32 95-126 20-51 (255)
483 PRK10908 cell division protein 96.5 0.0029 6.3E-08 55.3 4.0 32 95-126 21-52 (222)
484 COG4559 ABC-type hemin transpo 96.5 0.002 4.3E-08 55.7 2.8 29 98-126 23-51 (259)
485 TIGR01189 ccmA heme ABC export 96.5 0.0028 6.1E-08 54.4 3.8 32 95-126 19-50 (198)
486 PRK13541 cytochrome c biogenes 96.5 0.0025 5.5E-08 54.6 3.4 32 95-126 19-50 (195)
487 cd03258 ABC_MetN_methionine_tr 96.5 0.0026 5.7E-08 56.0 3.6 31 96-126 25-55 (233)
488 COG1118 CysA ABC-type sulfate/ 96.4 0.0034 7.3E-08 57.1 4.1 40 87-126 13-52 (345)
489 TIGR02673 FtsE cell division A 96.4 0.002 4.3E-08 56.0 2.6 32 95-126 21-52 (214)
490 cd03215 ABC_Carb_Monos_II This 96.4 0.0028 6E-08 53.8 3.4 30 97-126 21-50 (182)
491 TIGR03864 PQQ_ABC_ATP ABC tran 96.4 0.0031 6.8E-08 55.7 3.8 32 95-126 20-51 (236)
492 cd03265 ABC_DrrA DrrA is the A 96.4 0.0021 4.6E-08 56.1 2.7 32 95-126 19-50 (220)
493 cd03219 ABC_Mj1267_LivG_branch 96.4 0.0028 6E-08 55.9 3.5 31 96-126 20-50 (236)
494 cd03230 ABC_DR_subfamily_A Thi 96.4 0.0033 7.1E-08 52.8 3.8 32 95-126 19-50 (173)
495 COG1124 DppF ABC-type dipeptid 96.4 0.0028 6.2E-08 55.8 3.3 32 95-126 26-57 (252)
496 PRK13538 cytochrome c biogenes 96.4 0.0031 6.7E-08 54.5 3.6 32 95-126 20-51 (204)
497 PRK13539 cytochrome c biogenes 96.4 0.0032 6.9E-08 54.6 3.6 32 95-126 21-52 (207)
498 PRK10584 putative ABC transpor 96.4 0.0033 7.2E-08 55.1 3.8 31 96-126 30-60 (228)
499 TIGR02323 CP_lyasePhnK phospho 96.4 0.0029 6.3E-08 56.5 3.5 33 94-126 21-53 (253)
500 PRK11124 artP arginine transpo 96.4 0.0035 7.6E-08 55.6 3.9 32 95-126 21-52 (242)
No 1
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=100.00 E-value=5.5e-52 Score=371.28 Aligned_cols=238 Identities=47% Similarity=0.763 Sum_probs=213.6
Q ss_pred eee-cceEEEcC-CCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeehhh
Q 021615 20 IHV-TGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLEL 97 (310)
Q Consensus 20 ~~~-~g~~~~~~-~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~ 97 (310)
+.| +||+|+|. ++++++||++++|++++|+||.||+||++|+++. +++|+.+++|.+||++.+.+
T Consensus 88 i~VP~GT~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG~GN~~Fks~~-------------nrAP~~a~~G~~Ge~r~v~L 154 (369)
T COG0536 88 IKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKSSV-------------NRAPRFATPGEPGEERDLRL 154 (369)
T ss_pred EEcCCCCEEEeCCCCeEehhhccCCcEEEEEcCCCCCccchhhcCcc-------------cCCcccCCCCCCCceEEEEE
Confidence 444 89999995 6999999999999999999999999999987643 24788999999999999999
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
|||.+++|++||.||||||||+++++.++|+|++|||||+.|+.|.+.... ...|+++|+||++++|+++.|+
T Consensus 155 ELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-------~~sfv~ADIPGLIEGAs~G~GL 227 (369)
T COG0536 155 ELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-------GESFVVADIPGLIEGASEGVGL 227 (369)
T ss_pred EEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-------CCcEEEecCcccccccccCCCc
Confidence 999999999999999999999999999999999999999999999998632 2379999999999999999999
Q ss_pred HHHHHHHhhhcCEEEEecccCCC---CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCC
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD 254 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~---~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~ 254 (310)
+..|++|+++|.+++||+|++.. ++.++++.+..||..|.+.+.++|.++|+||+|+....+..+.+.+.+....-.
T Consensus 228 G~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~ 307 (369)
T COG0536 228 GLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGW 307 (369)
T ss_pred cHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999874 479999999999999999999999999999999887777788888888754222
Q ss_pred c----cccCccCCHHHHHHHHhhccCC
Q 021615 255 K----VTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 255 ~----~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
. +|+.++.|++++...+.....+
T Consensus 308 ~~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 308 EVFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred CcceeeehhcccCHHHHHHHHHHHHHH
Confidence 2 8999999999999887665443
No 2
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=2.4e-48 Score=343.85 Aligned_cols=230 Identities=44% Similarity=0.706 Sum_probs=208.4
Q ss_pred cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeehhhhhhc
Q 021615 23 TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRV 101 (310)
Q Consensus 23 ~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~l~~ 101 (310)
+||+|+| +.+.+++||+++++++++||||.||+||.+|.. |.. ..|..+++|..|+.+.+.++||.
T Consensus 129 ~Gt~v~d~~~~~~v~el~~~~~~~i~arGG~GG~gn~~fls-----------~~~--r~p~~~~~G~~G~e~~~~lELKs 195 (366)
T KOG1489|consen 129 VGTVVKDIEQGKLVAELTKEGDRVIAARGGEGGKGNKFFLS-----------NEN--RSPKFSKPGLNGEERVIELELKS 195 (366)
T ss_pred CccEEeecccchhHHHhccCCcEEEEeecCCCCccceeecc-----------ccc--cCcccccCCCCCceEEEEEEeee
Confidence 8999999 789999999999999999999999999977643 222 36788999999999999999999
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
+++|++||+||||||||+|+|+.++|++++|+|||+.|+++++.++.. ..+.++|+||+++++++++|++..|
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-------~q~tVADiPGiI~GAh~nkGlG~~F 268 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-------SQITVADIPGIIEGAHMNKGLGYKF 268 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-------ceeEeccCccccccccccCcccHHH
Confidence 999999999999999999999999999999999999999999987754 1489999999999999999999999
Q ss_pred HHHhhhcCEEEEecccCCC---CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhcCCCccc
Q 021615 182 LRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIGCDKVT 257 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~---~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~g~~~~s 257 (310)
++|+++|+.++||+|++.. .++++++.++.||+.|...+.++|.++|+||+|++++++. ++++.+.+..-.+.++|
T Consensus 269 LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvs 348 (366)
T KOG1489|consen 269 LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVS 348 (366)
T ss_pred HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEee
Confidence 9999999999999999998 9999999999999999999999999999999999755433 36676666655578899
Q ss_pred cCccCCHHHHHHHHh
Q 021615 258 SETELSSEDAVKSLS 272 (310)
Q Consensus 258 a~~~~gi~~l~~~l~ 272 (310)
|+.++|++++...|-
T Consensus 349 A~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 349 AKSGEGLEELLNGLR 363 (366)
T ss_pred eccccchHHHHHHHh
Confidence 999999999988763
No 3
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=4e-47 Score=351.71 Aligned_cols=238 Identities=42% Similarity=0.703 Sum_probs=205.8
Q ss_pred cceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeeh
Q 021615 18 MHIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSL 95 (310)
Q Consensus 18 ~~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 95 (310)
+.|.| +||+|+| +++++++||.+++|++++|+||.||+||.+|+++. ++.|+.++.|++||++.+
T Consensus 85 ~~~~vp~gt~v~~~~~~~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~~-------------~~~p~~~~~g~~g~~~~~ 151 (335)
T PRK12299 85 LVLKVPVGTQIYDADTGELIADLTEHGQRFLVAKGGKGGLGNAHFKSST-------------NRAPRYATPGEPGEERWL 151 (335)
T ss_pred eEEEeCCCCEEEECCCCcEEEEcCCCCcEEEEecCCCCcCCchhhcccc-------------CCCCccccCCCCCcEEEE
Confidence 34555 8999998 67899999999999999999999999999886532 236789999999999999
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 175 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~ 175 (310)
.++||.+++|+|||.||||||||+|+|+++++.+++|||||+.|+.+.+.+... .++++|||||+++.++...
T Consensus 152 ~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~-------~~~~i~D~PGli~ga~~~~ 224 (335)
T PRK12299 152 RLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY-------KSFVIADIPGLIEGASEGA 224 (335)
T ss_pred EEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC-------cEEEEEeCCCccCCCCccc
Confidence 999999999999999999999999999999999999999999999999876321 2699999999999999888
Q ss_pred hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHH-HHHHHHh--cC
Q 021615 176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS-LTEEILK--IG 252 (310)
Q Consensus 176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~-l~~~l~~--~g 252 (310)
+++..|++|+++|++++||+|+++.+++++++.|.++|..|.+.+.++|+++|+||+|+.+..+.... +...+.. ..
T Consensus 225 gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~ 304 (335)
T PRK12299 225 GLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGP 304 (335)
T ss_pred cHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999877899999999999998776678999999999999765432222 2222233 34
Q ss_pred CCccccCccCCHHHHHHHHhhcc
Q 021615 253 CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+..+||+++.|+++++..+....
T Consensus 305 i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 305 VFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 56689999999999999987654
No 4
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=3.3e-46 Score=353.79 Aligned_cols=239 Identities=46% Similarity=0.775 Sum_probs=207.3
Q ss_pred cceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeeh
Q 021615 18 MHIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSL 95 (310)
Q Consensus 18 ~~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 95 (310)
+.|.| +||+|+| +++++++||.+++|++++||||.||+||++|.++.+ ..|+.++.|.+||++.+
T Consensus 85 ~~i~vP~Gt~v~~~~~~~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s~~-------------~~p~~~~~G~~ge~~~~ 151 (424)
T PRK12297 85 LIIKVPVGTVVKDAETGEVIADLVEPGQEVVVAKGGRGGRGNAHFATSTN-------------QAPRIAENGEPGEEREL 151 (424)
T ss_pred eEEecCCCCEEEECCCCcEEeeeccCCcEEEEECCCCCCcCchhhcCCCC-------------CCCCcCCCCCCCeEeEE
Confidence 34555 8999999 689999999999999999999999999998875432 36788999999999999
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 175 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~ 175 (310)
.++||.+++|+|||.||||||||+|+|+++++++++|||||+.|+.+.+.... ...+++|||||+++.++...
T Consensus 152 ~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-------~~~~~laD~PGliega~~~~ 224 (424)
T PRK12297 152 RLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-------GRSFVMADIPGLIEGASEGV 224 (424)
T ss_pred EEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-------CceEEEEECCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999886542 12799999999999998888
Q ss_pred hHHHHHHHHhhhcCEEEEecccCCC---CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC
Q 021615 176 GLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG 252 (310)
Q Consensus 176 ~l~~~~~~~l~~~d~il~VvD~s~~---~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g 252 (310)
+++..|++|+++|++++||+|+++. ++.+++..|.++|..|.+.+.++|+++|+||+|+....+..+.+.+.+. ..
T Consensus 225 gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~-~~ 303 (424)
T PRK12297 225 GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG-PK 303 (424)
T ss_pred hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC-Cc
Confidence 9999999999999999999999864 7888899999999999877778999999999998655444455554443 34
Q ss_pred CCccccCccCCHHHHHHHHhhccCC
Q 021615 253 CDKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
+..+||+++.|+++++..+......
T Consensus 304 i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 304 VFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999999998765533
No 5
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=7e-46 Score=355.69 Aligned_cols=239 Identities=44% Similarity=0.722 Sum_probs=207.7
Q ss_pred cceee-cceEEEcCCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeehh
Q 021615 18 MHIHV-TGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLE 96 (310)
Q Consensus 18 ~~~~~-~g~~~~~~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~ 96 (310)
+.|.| +||+|+|++|++++||..+++++++|+||.||+||.+|+++.+ +.|+.++.|++||++.+.
T Consensus 87 ~~i~VP~Gt~v~~~~~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~~~-------------~~p~~~~~G~~Ge~~~~~ 153 (500)
T PRK12296 87 LVLPVPDGTVVLDEDGEVLADLVGAGTRFVAAAGGRGGLGNAALASKAR-------------KAPGFALLGEPGEERDLV 153 (500)
T ss_pred eEEecCCCcEEEcCCCcEEeeeccCCCEEEEEccCCCcCCCcccCCccC-------------CCCccccCCCCCceEEEE
Confidence 34555 8999999999999999999999999999999999999876433 377899999999999999
Q ss_pred hhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615 97 LILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 176 (310)
Q Consensus 97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~ 176 (310)
++||.+++|+|||.||||||||+|+|++.++.+++|||||+.|+.+.+..... +|++|||||+++.++...+
T Consensus 154 leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~--------~f~laDtPGliegas~g~g 225 (500)
T PRK12296 154 LELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT--------RFTVADVPGLIPGASEGKG 225 (500)
T ss_pred EEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe--------EEEEEECCCCccccchhhH
Confidence 99999999999999999999999999999999999999999999999876532 7999999999999888889
Q ss_pred HHHHHHHHhhhcCEEEEecccCC----CCcHHHHHHHHHHHHhcCC---------CCCCCCEEEEEeCCCCCCcHhHHHH
Q 021615 177 LGRNFLRHLRRTRLLVHVIDAAA----ENPVNDYRTVKEELRMYNP---------DYLERPFIVVLNKIDLPEARDRLQS 243 (310)
Q Consensus 177 l~~~~~~~l~~~d~il~VvD~s~----~~~~~~~~~~~~~l~~~~~---------~~~~~p~ivv~NK~Dl~~~~~~~~~ 243 (310)
++..|++|+++||+++||+|+++ .++.+++..+.++|..|.. .+.++|+++|+||+|+.+..+..+.
T Consensus 226 Lg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~ 305 (500)
T PRK12296 226 LGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEF 305 (500)
T ss_pred HHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHH
Confidence 99999999999999999999985 3577788888889988864 3457999999999999866554455
Q ss_pred HHHHHHhcC--CCccccCccCCHHHHHHHHhhccCC
Q 021615 244 LTEEILKIG--CDKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 244 l~~~l~~~g--~~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
+...+...+ +..+|++++.|+.+++..|......
T Consensus 306 l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 306 VRPELEARGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 555565544 4569999999999999988765543
No 6
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=100.00 E-value=3.2e-45 Score=338.73 Aligned_cols=235 Identities=45% Similarity=0.765 Sum_probs=203.9
Q ss_pred ceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeehh
Q 021615 19 HIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLE 96 (310)
Q Consensus 19 ~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~ 96 (310)
.+.| +||+|+| +++++++||.+++|++++||||.||+||++|.++. ++.|+.++.|.+||++.+.
T Consensus 85 ~~~vp~gt~v~~~~~~~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~~-------------~~~p~~~~~g~~g~~~~~~ 151 (329)
T TIGR02729 85 VIKVPVGTVVYDADTGELLADLTEPGQRFVVAKGGRGGLGNAHFKSST-------------NRAPRFATPGEPGEERWLR 151 (329)
T ss_pred EEEeCCCCEEEECCCCcEEeEeccCCcEEEecCCCCCCCCcccccCcc-------------CCCCcccCCCCCCcEEEEE
Confidence 4555 8999999 57899999999999999999999999999887542 2367889999999999999
Q ss_pred hhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615 97 LILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 176 (310)
Q Consensus 97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~ 176 (310)
++||.+++|+|||.||||||||+|+|++.++.+++|||||+.|+.+.+.... ..++++|||||+++.++...+
T Consensus 152 lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-------~~~~~i~D~PGli~~a~~~~g 224 (329)
T TIGR02729 152 LELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-------GRSFVIADIPGLIEGASEGAG 224 (329)
T ss_pred EEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-------ceEEEEEeCCCcccCCccccc
Confidence 9999999999999999999999999999999999999999999999987543 127999999999999888889
Q ss_pred HHHHHHHHhhhcCEEEEecccCCC---CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-hc-
Q 021615 177 LGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-KI- 251 (310)
Q Consensus 177 l~~~~~~~l~~~d~il~VvD~s~~---~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-~~- 251 (310)
++..|++|+++|+++++|+|+++. ++.+++..|.++|..|...+.++|+++|+||+|+....+ .+.+.+.+. ..
T Consensus 225 Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~ 303 (329)
T TIGR02729 225 LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALG 303 (329)
T ss_pred HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcC
Confidence 999999999999999999999976 788899999999998876667899999999999986543 344444443 22
Q ss_pred -CCCccccCccCCHHHHHHHHhhc
Q 021615 252 -GCDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 252 -g~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
.+..+||+++.|+++++..+...
T Consensus 304 ~~vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 304 KPVFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred CcEEEEEccCCcCHHHHHHHHHHH
Confidence 35668999999999999988653
No 7
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=1.5e-44 Score=340.65 Aligned_cols=242 Identities=40% Similarity=0.637 Sum_probs=205.1
Q ss_pred cceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeeh
Q 021615 18 MHIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSL 95 (310)
Q Consensus 18 ~~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 95 (310)
..|.| +||+|+| +++++++||.+++|++++||||.||+||++|.++. ++.|+.++.|.+||++.+
T Consensus 86 ~~i~vP~gt~v~~~~~~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~~~-------------~~~p~~~~~g~~g~~~~~ 152 (390)
T PRK12298 86 ITIKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSSV-------------NRAPRQKTPGTPGEEREL 152 (390)
T ss_pred eEEEcCCCCEEEeCCCCcEEEEeccCCcEEEEecCCCCccchhhhccCc-------------cCCCcccCCCCCCceEEE
Confidence 34555 8999998 68999999999999999999999999999876532 236788999999999999
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 175 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~ 175 (310)
.++||.+++|+|||.||||||||+|+|++.++.++++||||+.|+.+.+..... ..++++||||+++.++.+.
T Consensus 153 ~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-------~~i~~vDtPGi~~~a~~~~ 225 (390)
T PRK12298 153 KLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-------RSFVVADIPGLIEGASEGA 225 (390)
T ss_pred EEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-------cEEEEEeCCCccccccchh
Confidence 999999999999999999999999999999998899999999999999876421 2599999999999888888
Q ss_pred hHHHHHHHHhhhcCEEEEecccC---CCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-
Q 021615 176 GLGRNFLRHLRRTRLLVHVIDAA---AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI- 251 (310)
Q Consensus 176 ~l~~~~~~~l~~~d~il~VvD~s---~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~- 251 (310)
+++..|++|+++||++++|+|++ ...+.+++..|.+++..|...+.++|+++|+||+|+....+..+.+.+.....
T Consensus 226 ~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~ 305 (390)
T PRK12298 226 GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALG 305 (390)
T ss_pred hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhC
Confidence 89999999999999999999998 45677888899999998876667899999999999976544333333222332
Q ss_pred ---CCCccccCccCCHHHHHHHHhhccCCcc
Q 021615 252 ---GCDKVTSETELSSEDAVKSLSTEGGEAD 279 (310)
Q Consensus 252 ---g~~~~sa~~~~gi~~l~~~l~~~~~~~~ 279 (310)
.+..+||+++.|+.+++..+...+.+.+
T Consensus 306 ~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 306 WEGPVYLISAASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHhhhCc
Confidence 3456899999999999999877665433
No 8
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=3.9e-25 Score=185.30 Aligned_cols=164 Identities=54% Similarity=0.879 Sum_probs=130.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
++|+++|.+|||||||+|+|++.+..++.++++|..+..+.+..... ..+.+|||||+.+.......+...|+
T Consensus 1 ~~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-------~~~~l~DtpG~~~~~~~~~~~~~~~~ 73 (170)
T cd01898 1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-------RSFVVADIPGLIEGASEGKGLGHRFL 73 (170)
T ss_pred CCeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-------CeEEEEecCcccCcccccCCchHHHH
Confidence 46999999999999999999998877788899999888887764321 26899999999765444445677888
Q ss_pred HHhhhcCEEEEecccCCC-CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh---cCCCcccc
Q 021615 183 RHLRRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKVTS 258 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~---~g~~~~sa 258 (310)
+++..||++++|+|+++. .+.+.+..|.+++..+.....++|+++|+||+|+.+.....+.+...+.. ..+..+|+
T Consensus 74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 153 (170)
T cd01898 74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISA 153 (170)
T ss_pred HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEec
Confidence 888899999999999998 78888888888888765444579999999999997654433333334443 23556999
Q ss_pred CccCCHHHHHHHHhh
Q 021615 259 ETELSSEDAVKSLST 273 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~ 273 (310)
+.+.|+.++++.++.
T Consensus 154 ~~~~gi~~l~~~i~~ 168 (170)
T cd01898 154 LTGEGLDELLRKLAE 168 (170)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999998764
No 9
>COG2262 HflX GTPases [General function prediction only]
Probab=99.92 E-value=1.2e-25 Score=206.93 Aligned_cols=229 Identities=28% Similarity=0.307 Sum_probs=163.4
Q ss_pred CCCcEEEecCCCCceEEEe--------cCCC--C--CCCCCCcccchhccccccccccccCchhhhhhcCCCCceeehhh
Q 021615 30 KRGKLFSDLAHPGDEVLVA--------RGGR--G--GISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLEL 97 (310)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~--------~gg~--G--G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~ 97 (310)
.+|+++++|++-...+..+ |.|+ | |-|++.....+|. ..+++.....++...-..++..+-.+
T Consensus 113 ~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG~rGpGE~~lE~drR~-----ir~rI~~i~~eLe~v~~~R~~~R~~R 187 (411)
T COG2262 113 REGKLQVELAQLRYELPRLVGSGSHLSRLGGGIGFRGPGETQLETDRRR-----IRRRIAKLKRELENVEKAREPRRKKR 187 (411)
T ss_pred chhhhhhhHHhhhhhhhHhHhhhhhcccccCCCCCCCCCchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3468888888844333222 2232 2 5666655554332 11223333344444555555545455
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
.-...+.|++||++|||||||+|+|++......+..|+|++|+...+...+ +.++.+.||.||++. .+..+
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-------g~~vlLtDTVGFI~~--LP~~L 258 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-------GRKVLLTDTVGFIRD--LPHPL 258 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-------CceEEEecCccCccc--CChHH
Confidence 556789999999999999999999999988889999999999999987653 137999999999976 45667
Q ss_pred HHHHHHH---hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCC
Q 021615 178 GRNFLRH---LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD 254 (310)
Q Consensus 178 ~~~~~~~---l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~ 254 (310)
..+|.+. ...+|++++|+|++++...+.++...+.|..... .+.|+|+|+||+|+.........+.... . ...
T Consensus 259 V~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~--~~~p~i~v~NKiD~~~~~~~~~~~~~~~-~-~~v 334 (411)
T COG2262 259 VEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGA--DEIPIILVLNKIDLLEDEEILAELERGS-P-NPV 334 (411)
T ss_pred HHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCC--CCCCEEEEEecccccCchhhhhhhhhcC-C-CeE
Confidence 7777555 4678999999999999888888888888877643 4689999999999887644222222211 1 245
Q ss_pred ccccCccCCHHHHHHHHhhccC
Q 021615 255 KVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
.+||+++.|++.+.+.+.....
T Consensus 335 ~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 335 FISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred EEEeccCcCHHHHHHHHHHHhh
Confidence 6899999999999988766543
No 10
>PRK11058 GTPase HflX; Provisional
Probab=99.92 E-value=1.4e-25 Score=214.08 Aligned_cols=162 Identities=32% Similarity=0.384 Sum_probs=118.3
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..++|+++|+||||||||+|+|++.+..+.+.+|+|+++....+..... ..+.+|||||+++.. ...+...
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-------~~~~l~DTaG~~r~l--p~~lve~ 266 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-------GETVLADTVGFIRHL--PHDLVAA 266 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-------CeEEEEecCcccccC--CHHHHHH
Confidence 4589999999999999999999998877889999999998877764321 168999999996531 1223333
Q ss_pred H---HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC-CCcc
Q 021615 181 F---LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG-CDKV 256 (310)
Q Consensus 181 ~---~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g-~~~~ 256 (310)
| +.++..||++++|+|++++...++...+.+.+..... .++|+++|+||+|+...... .+........ +..+
T Consensus 267 f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~--~~~pvIiV~NKiDL~~~~~~--~~~~~~~~~~~~v~I 342 (426)
T PRK11058 267 FKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA--HEIPTLLVMNKIDMLDDFEP--RIDRDEENKPIRVWL 342 (426)
T ss_pred HHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc--CCCCEEEEEEcccCCCchhH--HHHHHhcCCCceEEE
Confidence 3 4556789999999999998777776655555554422 36899999999999753221 1111111112 2458
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||+++.|++++++.+....
T Consensus 343 SAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 343 SAQTGAGIPLLFQALTERL 361 (426)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999987765
No 11
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=5e-25 Score=205.76 Aligned_cols=158 Identities=32% Similarity=0.370 Sum_probs=118.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH-
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR- 179 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~- 179 (310)
..++|+++|+||||||||+|+|++.+..+.+++|+|+++....+..... ..+.+|||||+++... ..+..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-------~~i~l~DT~G~~~~l~--~~lie~ 258 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-------GEVLLTDTVGFIRDLP--HELVAA 258 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-------ceEEEEecCcccccCC--HHHHHH
Confidence 5689999999999999999999998866688999999998887765321 2789999999965311 22222
Q ss_pred --HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-cCCCcc
Q 021615 180 --NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-IGCDKV 256 (310)
Q Consensus 180 --~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-~g~~~~ 256 (310)
..+.++..||++++|+|++++...++...+...+..... .++|+++|+||+|+.+..+ ...+ ... ..+..+
T Consensus 259 f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~--~~~piIlV~NK~Dl~~~~~-v~~~---~~~~~~~i~i 332 (351)
T TIGR03156 259 FRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA--EDIPQLLVYNKIDLLDEPR-IERL---EEGYPEAVFV 332 (351)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc--CCCCEEEEEEeecCCChHh-HHHH---HhCCCCEEEE
Confidence 234567899999999999998877776666666665432 3689999999999975432 2211 111 234569
Q ss_pred ccCccCCHHHHHHHHhh
Q 021615 257 TSETELSSEDAVKSLST 273 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~ 273 (310)
||+++.|+++++..+..
T Consensus 333 SAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 333 SAKTGEGLDLLLEAIAE 349 (351)
T ss_pred EccCCCCHHHHHHHHHh
Confidence 99999999999998754
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=2.4e-23 Score=194.38 Aligned_cols=155 Identities=27% Similarity=0.331 Sum_probs=127.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc--cCCchHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA--HLGKGLGR 179 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~--~~~~~l~~ 179 (310)
+.|++||.||||||||+|+|++.+.++ +++|++|.+...+.....+. .|.++||+|+.+.. .....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--------~f~lIDTgGl~~~~~~~l~~~i~~ 75 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--------EFILIDTGGLDDGDEDELQELIRE 75 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--------eEEEEECCCCCcCCchHHHHHHHH
Confidence 679999999999999999999999887 99999999998888775543 79999999998754 34456667
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCc---c
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDK---V 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~---~ 256 (310)
+.+..+..||+++||+|+..+.+.++.. +.+.|.. .++|+++|+||+|.... +.....+.++|+.+ +
T Consensus 76 Qa~~Ai~eADvilfvVD~~~Git~~D~~-ia~~Lr~-----~~kpviLvvNK~D~~~~----e~~~~efyslG~g~~~~I 145 (444)
T COG1160 76 QALIAIEEADVILFVVDGREGITPADEE-IAKILRR-----SKKPVILVVNKIDNLKA----EELAYEFYSLGFGEPVPI 145 (444)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCCEEEEEEcccCchh----hhhHHHHHhcCCCCceEe
Confidence 7788899999999999999877777643 4456664 47999999999998743 34455667787766 8
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||..|.|+.++++.+...+
T Consensus 146 SA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 146 SAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ehhhccCHHHHHHHHHhhc
Confidence 9999999999999987765
No 13
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.90 E-value=1.8e-23 Score=187.27 Aligned_cols=196 Identities=23% Similarity=0.440 Sum_probs=138.4
Q ss_pred hhccccccccccccCchhhhhhcCCCCceeehhhhhh-ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccce
Q 021615 64 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILR-VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG 142 (310)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~l~-~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~ 142 (310)
.|+.++++....++...+.+...+...+..+--..+. ..++|++.|+||||||||++.+++++|.+++|||||...++|
T Consensus 129 lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG 208 (346)
T COG1084 129 LRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG 208 (346)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe
Confidence 4445555555555666666666655555221111112 557899999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCccCCCceEEEeCCCCCccccCC-chHHHHH---HHHhhhcCEEEEecccCC--CCcHHHHHHHHHHHHhc
Q 021615 143 RLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KGLGRNF---LRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMY 216 (310)
Q Consensus 143 ~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~-~~l~~~~---~~~l~~~d~il~VvD~s~--~~~~~~~~~~~~~l~~~ 216 (310)
.+..... +++++||||+.+..-.. ..+.++. ++|+ .++++|++|.+. ..+.+.-..++++++..
T Consensus 209 hfe~~~~--------R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~ 278 (346)
T COG1084 209 HFERGYL--------RIQVIDTPGLLDRPLEERNEIERQAILALRHL--AGVILFLFDPSETCGYSLEEQISLLEEIKEL 278 (346)
T ss_pred eeecCCc--------eEEEecCCcccCCChHHhcHHHHHHHHHHHHh--cCeEEEEEcCccccCCCHHHHHHHHHHHHHh
Confidence 9976543 89999999998764322 2333332 3343 579999999986 55666667778888764
Q ss_pred CCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCC---ccccCccCCHHHHHHHHhhc
Q 021615 217 NPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD---KVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 217 ~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~---~~sa~~~~gi~~l~~~l~~~ 274 (310)
...|+++|+||+|..+. +..+++...+...+.. .+++..+.+.+..-..+...
T Consensus 279 ----f~~p~v~V~nK~D~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 279 ----FKAPIVVVINKIDIADE-EKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred ----cCCCeEEEEecccccch-hHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 35899999999999865 3355555555555444 57888888877766555443
No 14
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=1.4e-22 Score=183.44 Aligned_cols=162 Identities=23% Similarity=0.223 Sum_probs=118.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 181 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~~~ 181 (310)
+|+++|.||||||||+|+|++.+..+ ++.|+||.....+...... .++.+|||||+.+... ....+.+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--------~qii~vDTPG~~~~~~~l~~~~~~~~ 73 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--------SQIIFIDTPGFHEKKHSLNRLMMKEA 73 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--------cEEEEEECcCCCCCcchHHHHHHHHH
Confidence 58999999999999999999998654 8899999976665544322 2689999999976522 122344455
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc---CCCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~---g~~~~sa 258 (310)
..++..+|++++|+|+++....+ ..+.+.+.. .+.|+++|+||+|+....+..+.+....... .+..+||
T Consensus 74 ~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~-----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA 146 (270)
T TIGR00436 74 RSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN-----LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISA 146 (270)
T ss_pred HHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh-----cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEec
Confidence 67788999999999999865543 445555554 3689999999999975443333333222222 3466999
Q ss_pred CccCCHHHHHHHHhhccCCccc
Q 021615 259 ETELSSEDAVKSLSTEGGEADL 280 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~~~~~~ 280 (310)
+++.|++++++.+...+.+.+.
T Consensus 147 ~~g~gi~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 147 LTGDNTSFLAAFIEVHLPEGPF 168 (270)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC
Confidence 9999999999999887755443
No 15
>COG1159 Era GTPase [General function prediction only]
Probab=99.90 E-value=1.3e-22 Score=180.23 Aligned_cols=166 Identities=26% Similarity=0.322 Sum_probs=130.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 181 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~~~ 181 (310)
-|++||.||||||||+|+|.|.+..+ ++.|.||+....|.+..+.. +++++||||+.+..+ .++.+.+..
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~--------QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNA--------QIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCc--------eEEEEeCCCCCCcchHHHHHHHHHH
Confidence 38999999999999999999999887 99999999988888876543 899999999987632 355666777
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-c---CCCccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-I---GCDKVT 257 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-~---g~~~~s 257 (310)
.+.+..+|+++||+|+.......+ +.+.+.|+. ...|+++++||+|.......+..+.+.+.. . .+.++|
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGD-EFILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccH-HHHHHHHhh-----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEee
Confidence 788899999999999997444333 455566654 367999999999998876534455555542 2 344589
Q ss_pred cCccCCHHHHHHHHhhccCCcccccc
Q 021615 258 SETELSSEDAVKSLSTEGGEADLLSS 283 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~~~~~~~~~ 283 (310)
|..+.|+..+.+.+...+.+.+....
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg~~~yp 179 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEGPWYYP 179 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCCCCcCC
Confidence 99999999999999988877665433
No 16
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.89 E-value=5.4e-23 Score=172.93 Aligned_cols=160 Identities=44% Similarity=0.782 Sum_probs=120.6
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhh
Q 021615 107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 186 (310)
Q Consensus 107 lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~ 186 (310)
++|++|||||||+|+|++.+..+++++++|..++.+.+.... ...+.+|||||+.+.....+.+...++.++.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-------GARIQVADIPGLIEGASEGRGLGNQFLAHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-------CCeEEEEeccccchhhhcCCCccHHHHHHHh
Confidence 589999999999999999887678899999999888765441 1278999999997655444556667778888
Q ss_pred hcCEEEEecccCCC------CcHHHHHHHHHHHHhcCCC-----CCCCCEEEEEeCCCCCCcHhHHHHHHHHH---HhcC
Q 021615 187 RTRLLVHVIDAAAE------NPVNDYRTVKEELRMYNPD-----YLERPFIVVLNKIDLPEARDRLQSLTEEI---LKIG 252 (310)
Q Consensus 187 ~~d~il~VvD~s~~------~~~~~~~~~~~~l~~~~~~-----~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l---~~~g 252 (310)
.+|++++|+|+++. .+..+...+..++..+... ..++|+++|+||+|+.............. ....
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAE 153 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCC
Confidence 99999999999987 5677777777777654322 24789999999999986544322211111 1234
Q ss_pred CCccccCccCCHHHHHHHHhh
Q 021615 253 CDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~ 273 (310)
+..+|++++.|++++++.+..
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHh
Confidence 566899999999999998754
No 17
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.89 E-value=2.1e-23 Score=172.31 Aligned_cols=150 Identities=29% Similarity=0.419 Sum_probs=107.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC--CchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~--~~~l~~~ 180 (310)
.+|+++|.||+|||||+|+|+|.+..++++|++|.+...+.+..... .+.++|+||+...... .+.+.+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~--------~~~lvDlPG~ysl~~~s~ee~v~~~ 72 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQ--------QVELVDLPGIYSLSSKSEEERVARD 72 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTE--------EEEEEE----SSSSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCc--------eEEEEECCCcccCCCCCcHHHHHHH
Confidence 36999999999999999999999988899999999999999876542 7999999998654322 2233333
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~~~s 257 (310)
++. .+..|++++|+|+++. ..+ ..+..++.+ .++|+++|+||+|...... ..+.+.+.+ ...+..+|
T Consensus 73 ~l~-~~~~D~ii~VvDa~~l--~r~-l~l~~ql~e-----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L-g~pvi~~s 142 (156)
T PF02421_consen 73 YLL-SEKPDLIIVVVDATNL--ERN-LYLTLQLLE-----LGIPVVVVLNKMDEAERKGIEIDAEKLSERL-GVPVIPVS 142 (156)
T ss_dssp HHH-HTSSSEEEEEEEGGGH--HHH-HHHHHHHHH-----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH-TS-EEEEB
T ss_pred HHh-hcCCCEEEEECCCCCH--HHH-HHHHHHHHH-----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh-CCCEEEEE
Confidence 332 3679999999999862 233 334455555 4799999999999865322 234555444 34455689
Q ss_pred cCccCCHHHHHHH
Q 021615 258 SETELSSEDAVKS 270 (310)
Q Consensus 258 a~~~~gi~~l~~~ 270 (310)
|.++.|++++.+.
T Consensus 143 a~~~~g~~~L~~~ 155 (156)
T PF02421_consen 143 ARTGEGIDELKDA 155 (156)
T ss_dssp TTTTBTHHHHHHH
T ss_pred eCCCcCHHHHHhh
Confidence 9999999999875
No 18
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=181.80 Aligned_cols=162 Identities=37% Similarity=0.583 Sum_probs=128.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
++|++||+|++|||||+|.|++.+..+++|+|||+.|..|.+.+.+. .++++|+||++++++.+.+.+++++
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga--------~IQild~Pgii~gas~g~grG~~vl 135 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGA--------QIQLLDLPGIIEGASSGRGRGRQVL 135 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCc--------eEEEEcCcccccCcccCCCCcceee
Confidence 67999999999999999999999999999999999999999998865 8999999999999999999999999
Q ss_pred HHhhhcCEEEEecccCCCCcH------------------------------------------HHHHHHHHHHHhcCC--
Q 021615 183 RHLRRTRLLVHVIDAAAENPV------------------------------------------NDYRTVKEELRMYNP-- 218 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~------------------------------------------~~~~~~~~~l~~~~~-- 218 (310)
..++.||++++|+|+...... -+...+...|.+|.-
T Consensus 136 sv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~n 215 (365)
T COG1163 136 SVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHN 215 (365)
T ss_pred eeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCccc
Confidence 999999999999999753210 011122222222210
Q ss_pred --------------------CCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHHHhhccC
Q 021615 219 --------------------DYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 219 --------------------~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+..-+|.++|+||+|+... +..+.+.+.. ....+||+.+.|++++.+.+-..++
T Consensus 216 A~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 216 ADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-EELERLARKP---NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-HHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhhC
Confidence 1134799999999999984 4455555433 6667999999999999988765554
No 19
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.89 E-value=3.7e-22 Score=183.64 Aligned_cols=173 Identities=36% Similarity=0.566 Sum_probs=127.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC-----------------CCCccCCCceEEEeCCCC
Q 021615 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT-----------------LGAEKYSSEATLADLPGL 167 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~-----------------~~~~~~~~~~~i~DtPG~ 167 (310)
|++||.||||||||+|+|++.+..+++|||||.+|+.+....... ..+. ...++++|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGK-RYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCc-CcceEEEEECCCC
Confidence 589999999999999999999988899999999999987764210 0000 0126899999999
Q ss_pred CccccCCchHHHHHHHHhhhcCEEEEecccCC-------------CCcHHHHHHHHHHHHhc-----------------C
Q 021615 168 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------------ENPVNDYRTVKEELRMY-----------------N 217 (310)
Q Consensus 168 ~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~-------------~~~~~~~~~~~~~l~~~-----------------~ 217 (310)
+++++...+++.+|+.+++.||++++|+|++. .++.++++.+..||..+ .
T Consensus 80 v~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~ 159 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADA 159 (318)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988889999999999999999999999974 24566666655555442 0
Q ss_pred ------------------------------C--------------------CCCCCCEEEEEeCCCCCCcHhHHHHHHHH
Q 021615 218 ------------------------------P--------------------DYLERPFIVVLNKIDLPEARDRLQSLTEE 247 (310)
Q Consensus 218 ------------------------------~--------------------~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~ 247 (310)
. ....+|+++|+||+|+....+..+.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~~~ 239 (318)
T cd01899 160 EKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLRLK 239 (318)
T ss_pred CCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHHhh
Confidence 0 02357999999999987554433333322
Q ss_pred HHhcCCCccccCccCCHHHHHH-HHhhccCCc
Q 021615 248 ILKIGCDKVTSETELSSEDAVK-SLSTEGGEA 278 (310)
Q Consensus 248 l~~~g~~~~sa~~~~gi~~l~~-~l~~~~~~~ 278 (310)
.....+..+||+.+.++.++.+ .+...+-+.
T Consensus 240 ~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 240 YPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred CCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 1122345589999999999997 577766443
No 20
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.88 E-value=9.9e-22 Score=164.41 Aligned_cols=161 Identities=27% Similarity=0.359 Sum_probs=111.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc-hHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGRNF 181 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~-~l~~~~ 181 (310)
++|+++|.+|||||||+|+|++....+.+++++|..+..+.+.... .++++|||||+.+...... .+....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~~~~~~~~~~~ 72 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY--------LRWQVIDTPGLLDRPLEERNTIEMQA 72 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc--------eEEEEEECCCcCCccccCCchHHHHH
Confidence 5799999999999999999999887777788988887776665432 2799999999965432211 111111
Q ss_pred HHHh-hhcCEEEEecccCCCCc--HHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hcCCCcc
Q 021615 182 LRHL-RRTRLLVHVIDAAAENP--VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKV 256 (310)
Q Consensus 182 ~~~l-~~~d~il~VvD~s~~~~--~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~g~~~~ 256 (310)
...+ ..+|++++|+|+++... .+....|.+++.... .+.|+++|+||+|+....+. ....+... ...+.++
T Consensus 73 ~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~ 148 (168)
T cd01897 73 ITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKIDLLTFEDL-SEIEEEEELEGEEVLKI 148 (168)
T ss_pred HHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccccCchhhH-HHHHHhhhhccCceEEE
Confidence 1111 23689999999987543 244455666665432 36899999999999765432 22222222 2345668
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||+++.|++++++.++..+
T Consensus 149 Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 149 STLTEEGVDEVKNKACELL 167 (168)
T ss_pred EecccCCHHHHHHHHHHHh
Confidence 9999999999999987643
No 21
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.88 E-value=2.1e-22 Score=188.58 Aligned_cols=174 Identities=25% Similarity=0.289 Sum_probs=133.9
Q ss_pred chhhhhhcCCCCceeehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCC
Q 021615 79 DTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSS 157 (310)
Q Consensus 79 ~~~~~~~~g~~g~~~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~ 157 (310)
...++...+.+|+ .++.+.+|+++|.||||||||+|+|++.+.++ ++.|+||++.....+...+.
T Consensus 200 ~l~~ll~~~~~g~------ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~-------- 265 (454)
T COG0486 200 ELDELLATAKQGK------ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGI-------- 265 (454)
T ss_pred HHHHHHHhhhhhh------hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCE--------
Confidence 3444556666666 78899999999999999999999999999887 99999999988888877654
Q ss_pred ceEEEeCCCCCcccc--CCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAH--LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~--~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
++.++||+|+.+... +..|+.+++ ..++.||+++||+|++.+.+.++...+. .+. .++|+++|.||+|+.
T Consensus 266 pv~l~DTAGiRet~d~VE~iGIeRs~-~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~------~~~~~i~v~NK~DL~ 337 (454)
T COG0486 266 PVRLVDTAGIRETDDVVERIGIERAK-KAIEEADLVLFVLDASQPLDKEDLALIE-LLP------KKKPIIVVLNKADLV 337 (454)
T ss_pred EEEEEecCCcccCccHHHHHHHHHHH-HHHHhCCEEEEEEeCCCCCchhhHHHHH-hcc------cCCCEEEEEechhcc
Confidence 899999999987654 345666664 6789999999999999875555544332 111 478999999999998
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHHHhhccC
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
..... ..+ +......+..+|++++.|++.+.+.+.....
T Consensus 338 ~~~~~-~~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 338 SKIEL-ESE-KLANGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred ccccc-chh-hccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 76432 222 2222334677999999999999988765443
No 22
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.87 E-value=1.7e-21 Score=184.40 Aligned_cols=175 Identities=38% Similarity=0.576 Sum_probs=125.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC----------------CCccCCCceEEEeCCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----------------GAEKYSSEATLADLPG 166 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~----------------~~~~~~~~~~i~DtPG 166 (310)
++|+|||.||||||||+|+|++.+..+++|||||++|+.|.+...... ........++++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 579999999999999999999999888999999999999986632110 0001113688999999
Q ss_pred CCccccCCchHHHHHHHHhhhcCEEEEecccCC-------------CCcHHHHHHHHHHHHhc-----------------
Q 021615 167 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------------ENPVNDYRTVKEELRMY----------------- 216 (310)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~-------------~~~~~~~~~~~~~l~~~----------------- 216 (310)
+.++++.+.+++.+|+++++.||++++|+|++. .++.++++.+..||..+
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~ 161 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ 161 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999988888999999999999999999999972 23455554444443221
Q ss_pred -------------------------------C-C------------------CCCCCCEEEEEeCCCCCCcHhHHHHHHH
Q 021615 217 -------------------------------N-P------------------DYLERPFIVVLNKIDLPEARDRLQSLTE 246 (310)
Q Consensus 217 -------------------------------~-~------------------~~~~~p~ivv~NK~Dl~~~~~~~~~l~~ 246 (310)
. + ....+|+++|+||+|.....+....+.+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~i~~ 241 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIERLKE 241 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHHHHh
Confidence 0 0 0135899999999998643332333333
Q ss_pred HHHhcCCCccccCccCCHHH-HHHHHhhccCCc
Q 021615 247 EILKIGCDKVTSETELSSED-AVKSLSTEGGEA 278 (310)
Q Consensus 247 ~l~~~g~~~~sa~~~~gi~~-l~~~l~~~~~~~ 278 (310)
. ....+..+||+.+.++.+ +.+.+...+-+.
T Consensus 242 ~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~ 273 (396)
T PRK09602 242 E-KYYIVVPTSAEAELALRRAAKAGLIDYIPGD 273 (396)
T ss_pred c-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCC
Confidence 2 222345689999999988 566666555443
No 23
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=8e-22 Score=164.56 Aligned_cols=164 Identities=19% Similarity=0.168 Sum_probs=121.6
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 175 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~ 175 (310)
+...++||.|+|.+|||||.|+.++.+....-. ..+|+ +.....+..+. .. .+++||||+|+.++.
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~--~~sTIGVDf~~rt~e~~g----k~--iKlQIWDTAGQERFr---- 72 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTES--YISTIGVDFKIRTVELDG----KT--IKLQIWDTAGQERFR---- 72 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchh--hcceeeeEEEEEEeeecc----eE--EEEEeeeccccHHHh----
Confidence 556789999999999999999999998752111 12233 22223333322 11 289999999997663
Q ss_pred hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhc
Q 021615 176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKI 251 (310)
Q Consensus 176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~ 251 (310)
..+.++.+.|+++|+|+|+++..++..+..|..|+..|.. .++|.++|+||+|+.+... ..+++...+...
T Consensus 73 ---tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~--~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~ 147 (205)
T KOG0084|consen 73 ---TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS--ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIP 147 (205)
T ss_pred ---hhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc--CCCCeEEEeeccccHhheecCHHHHHHHHHhcCCc
Confidence 3556777899999999999999999999999999999875 4589999999999987543 233333333322
Q ss_pred CCCccccCccCCHHHHHHHHhhccCCc
Q 021615 252 GCDKVTSETELSSEDAVKSLSTEGGEA 278 (310)
Q Consensus 252 g~~~~sa~~~~gi~~l~~~l~~~~~~~ 278 (310)
.+.++||+.+.++++.|..++..+...
T Consensus 148 ~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 148 IFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred ceeecccCCccCHHHHHHHHHHHHHHh
Confidence 366899999999999999988766443
No 24
>PRK15494 era GTPase Era; Provisional
Probab=99.87 E-value=5.6e-21 Score=178.10 Aligned_cols=166 Identities=23% Similarity=0.253 Sum_probs=119.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc-cCCchHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA-HLGKGLGR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~-~~~~~l~~ 179 (310)
..+|+++|.||||||||+|+|++.+..+ ++.+.||.....+.+.... .++.+|||||+.+.. .....+.+
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--------~qi~~~DTpG~~~~~~~l~~~~~r 123 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--------TQVILYDTPGIFEPKGSLEKAMVR 123 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--------eEEEEEECCCcCCCcccHHHHHHH
Confidence 3589999999999999999999987654 7788899876666665432 278999999996532 22233444
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc----CCCc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI----GCDK 255 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~----g~~~ 255 (310)
..+.++..||++++|+|+++.....+ ..+.+.+... +.|.++|+||+|+... ....+.+.+... .+.+
T Consensus 124 ~~~~~l~~aDvil~VvD~~~s~~~~~-~~il~~l~~~-----~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~ 195 (339)
T PRK15494 124 CAWSSLHSADLVLLIIDSLKSFDDIT-HNILDKLRSL-----NIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFP 195 (339)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCHHH-HHHHHHHHhc-----CCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEE
Confidence 45566889999999999875322221 3455555542 5688899999998753 234455555433 3456
Q ss_pred cccCccCCHHHHHHHHhhccCCcccccc
Q 021615 256 VTSETELSSEDAVKSLSTEGGEADLLSS 283 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~~~~~~~~~ 283 (310)
+||+++.|+++++..+...+.+.+....
T Consensus 196 iSAktg~gv~eL~~~L~~~l~~~~~~~~ 223 (339)
T PRK15494 196 ISALSGKNIDGLLEYITSKAKISPWLYA 223 (339)
T ss_pred EeccCccCHHHHHHHHHHhCCCCCCCCC
Confidence 8999999999999999988876655433
No 25
>PTZ00258 GTP-binding protein; Provisional
Probab=99.87 E-value=2.7e-21 Score=181.39 Aligned_cols=115 Identities=33% Similarity=0.568 Sum_probs=92.2
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC---------CCccCCCceEEEeCCCCCcc
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLIEG 170 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~---------~~~~~~~~~~i~DtPG~~~~ 170 (310)
...++|+|||.||||||||+|+|++.++.+++|||||++|+.+.+...... +......++.++||||+.++
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 455789999999999999999999999888999999999999998654210 00001125899999999999
Q ss_pred ccCCchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHHH
Q 021615 171 AHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELR 214 (310)
Q Consensus 171 ~~~~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l~ 214 (310)
++.+.+++..|+.++++||++++|+|+.. .++.++++.+..||.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~ 152 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELI 152 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHH
Confidence 88888999999999999999999999852 355666666555543
No 26
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=3.4e-21 Score=170.68 Aligned_cols=160 Identities=36% Similarity=0.519 Sum_probs=120.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
++|+++|+||+|||||+|+|++....+++++|+|..+..+.+.+... .+++|||||+.+.+....++..+++
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~--------~i~l~DtpG~~~~~~~~~~~~~~~l 72 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA--------KIQLLDLPGIIEGAADGKGRGRQVI 72 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe--------EEEEEECCCcccccccchhHHHHHH
Confidence 47999999999999999999999888899999999998888765432 7899999999887655556777788
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHH--------------------------------------------HhcC-
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEEL--------------------------------------------RMYN- 217 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l--------------------------------------------~~~~- 217 (310)
..++.+|++++|+|+++... +...+.++| ++|.
T Consensus 73 ~~~~~ad~il~V~D~t~~~~--~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i 150 (233)
T cd01896 73 AVARTADLILMVLDATKPEG--HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKI 150 (233)
T ss_pred HhhccCCEEEEEecCCcchh--HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCe
Confidence 88999999999999976432 222222333 2221
Q ss_pred ---------------------CCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHHHhhccC
Q 021615 218 ---------------------PDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 218 ---------------------~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
.+....|+++|+||+|+.+..+ ...+ .....+..+|++++.|++++++.+...+.
T Consensus 151 ~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~-~~~~---~~~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 151 HNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE-LDLL---ARQPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred eeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH-HHHH---hcCCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 1112369999999999976533 2222 22345677999999999999999876553
No 27
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.86 E-value=1.2e-20 Score=163.09 Aligned_cols=169 Identities=18% Similarity=0.204 Sum_probs=111.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC-CchHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRNF 181 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~-~~~l~~~~ 181 (310)
.+|+++|.+|||||||++++++.+......|.++.......+..+ +..+ .+.+|||||+.++... ........
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~----~~~~--~l~i~Dt~G~~~~~~~~~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLS----GRVY--DLHILDVPNMQRYPGTAGQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEEC----CEEE--EEEEEeCCCcccCCccchhHHHHHH
Confidence 379999999999999999999876433323333222221222211 1112 6889999998654211 11111112
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCcc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKV 256 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~ 256 (310)
..+++.||++++|+|++++.+++....|.+.+..+.. ...+.|+++|+||+|+..... ....+......+.+.++
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 154 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLEC 154 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEe
Confidence 3456889999999999999999888888887765431 124689999999999965321 12222222223556789
Q ss_pred ccCccCCHHHHHHHHhhccCC
Q 021615 257 TSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~~~ 277 (310)
||+++.|++++|+.++.....
T Consensus 155 Sak~g~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 155 SAKYNWHILLLFKELLISATT 175 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhhc
Confidence 999999999999998876543
No 28
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.86 E-value=1.6e-20 Score=155.87 Aligned_cols=157 Identities=11% Similarity=0.084 Sum_probs=113.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|++|||||||+++|++.+......+.++.+.....+..+. .. ..+.+|||||.... .....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~l~~~D~~G~~~~-------~~~~~ 67 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLED----KT--VRLQLWDTAGQERF-------RSLIP 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECC----EE--EEEEEEECCCcHHH-------HHHHH
Confidence 3799999999999999999999887666666666655554444321 11 16899999997543 12234
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~ 259 (310)
..+..+|++++|+|++++.++++...|...+..... .+.|+++|+||+|+..... ..+........ ..+.++|++
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAK 145 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCC
Confidence 456789999999999998888888888887765322 2689999999999954322 12222222233 345669999
Q ss_pred ccCCHHHHHHHHhhc
Q 021615 260 TELSSEDAVKSLSTE 274 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~ 274 (310)
++.|+++++..++..
T Consensus 146 ~~~~v~~l~~~i~~~ 160 (161)
T cd01861 146 AGHNVKELFRKIASA 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998653
No 29
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.85 E-value=1.7e-20 Score=162.53 Aligned_cols=160 Identities=31% Similarity=0.391 Sum_probs=116.9
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
.+..++|+++|++|||||||+|+|++....+.+.+++|..+....+..... ..+.+|||||+.+... ..+.
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-------~~~~i~Dt~G~~~~~~--~~~~ 108 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-------REVLLTDTVGFIRDLP--HQLV 108 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-------ceEEEeCCCccccCCC--HHHH
Confidence 345689999999999999999999998766677788888877766654321 1689999999965422 1122
Q ss_pred HHH---HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCC
Q 021615 179 RNF---LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGC 253 (310)
Q Consensus 179 ~~~---~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~ 253 (310)
..+ +.++..+|++++|+|++++....+...+.+.+..+.. .++|+++|+||+|+....... ..+.. ..+
T Consensus 109 ~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~--~~~~viiV~NK~Dl~~~~~~~----~~~~~~~~~~ 182 (204)
T cd01878 109 EAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA--EDIPMILVLNKIDLLDDEELE----ERLEAGRPDA 182 (204)
T ss_pred HHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc--CCCCEEEEEEccccCChHHHH----HHhhcCCCce
Confidence 222 3346689999999999988777776666666665432 368999999999997654322 22222 245
Q ss_pred CccccCccCCHHHHHHHHhh
Q 021615 254 DKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~ 273 (310)
..+|++++.|+.+++..|..
T Consensus 183 ~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 183 VFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred EEEEcCCCCCHHHHHHHHHh
Confidence 56899999999999998764
No 30
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6.4e-21 Score=174.60 Aligned_cols=97 Identities=38% Similarity=0.698 Sum_probs=83.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC---------C-CCccCCCceEEEeCCCCCcccc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT---------L-GAEKYSSEATLADLPGLIEGAH 172 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~---------~-~~~~~~~~~~i~DtPG~~~~~~ 172 (310)
.++||||.||||||||+|+++.....+++|||||++|+.|.++.... . +.......+.++|++|+..+++
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 57999999999999999999999988899999999999999874320 0 0111123689999999999999
Q ss_pred CCchHHHHHHHHhhhcCEEEEecccCC
Q 021615 173 LGKGLGRNFLRHLRRTRLLVHVIDAAA 199 (310)
Q Consensus 173 ~~~~l~~~~~~~l~~~d~il~VvD~s~ 199 (310)
.++||+.+|+.+++.+|+|++|||++.
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 999999999999999999999999984
No 31
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=1.3e-20 Score=157.42 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=106.8
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.+||+++|.+|||||||++++.+........+..+.+.....+.... . ...+.+|||||+.+. ....
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~l~i~D~~G~~~~-------~~~~ 69 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEG----K--RVKLQIWDTAGQERF-------RTIT 69 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECC----E--EEEEEEEECCChHHH-------HHHH
Confidence 47899999999999999999987653221111111122222222211 1 126899999997543 1223
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVT 257 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~s 257 (310)
...++.+|++++|+|++++.+++....|..++..+.. .+.|+++|+||+|+....+ ....+.+.+....+.++|
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S 147 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETS 147 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEE
Confidence 3456789999999999998888888888888876432 4689999999999975422 222333322223456799
Q ss_pred cCccCCHHHHHHHHhhc
Q 021615 258 SETELSSEDAVKSLSTE 274 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~ 274 (310)
++++.|++++|..++..
T Consensus 148 a~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 148 AKESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999998754
No 32
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.85 E-value=1.9e-20 Score=155.61 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=106.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
++|+++|.+|||||||++++...... ..+..|+.......+..+. . ...+.+|||||+.++.. +. .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~~~~----~~---~ 67 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDG----Q--QCMLEILDTAGTEQFTA----MR---D 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECC----E--EEEEEEEECCCccccch----HH---H
Confidence 58999999999999999999976532 2233333222222222211 1 12678999999876522 22 2
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCcccc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTS 258 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~sa 258 (310)
.+++.+|++++|+|.++..++++...|.+++..+.. ..+.|+++|+||+|+..... ....+.+.+. ..+.++||
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa 145 (163)
T cd04136 68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETSA 145 (163)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEecC
Confidence 345689999999999998888888888888876532 23689999999999865322 1222222221 34567999
Q ss_pred CccCCHHHHHHHHhhc
Q 021615 259 ETELSSEDAVKSLSTE 274 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~ 274 (310)
+++.|+.++|..++..
T Consensus 146 ~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 146 KSKINVDEVFADLVRQ 161 (163)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998754
No 33
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.85 E-value=1.4e-20 Score=157.00 Aligned_cols=158 Identities=19% Similarity=0.118 Sum_probs=110.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++.+......|.++.......+.... .. ..+.+|||||+.+.. ...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~l~D~~g~~~~~-------~~~ 69 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDG----KT--IKAQIWDTAGQERYR-------AIT 69 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC----EE--EEEEEEeCCChHHHH-------HHH
Confidence 36899999999999999999998875444444444333333333221 11 268999999986432 122
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHH--hcCCCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEIL--KIGCDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~--~~g~~~~sa 258 (310)
..+++.++++++|+|+++..+++++..|..++..... .+.|+++|+||+|+..... ..++...... ...+.++|+
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSA 147 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEEC
Confidence 3456789999999999998888888888888876543 3589999999999875322 1222222222 345677999
Q ss_pred CccCCHHHHHHHHhhc
Q 021615 259 ETELSSEDAVKSLSTE 274 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~ 274 (310)
+++.|++++|+.+...
T Consensus 148 ~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 148 LDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999997653
No 34
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=2.1e-20 Score=161.78 Aligned_cols=163 Identities=17% Similarity=0.112 Sum_probs=109.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
+||+++|.+|||||||+++|++........+....+.....+..+. ... ..+.+|||||..... ..+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~---~~~--~~l~l~Dt~G~~~~~-------~~~~ 68 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDP---NTV--VRLQLWDIAGQERFG-------GMTR 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC---CCE--EEEEEEECCCchhhh-------hhHH
Confidence 4799999999999999999998653221112111122222232220 111 268999999985542 1233
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCcH-hHHHHHHHHHHh---cCCCcc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK---IGCDKV 256 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~--~~~~~~p~ivv~NK~Dl~~~~-~~~~~l~~~l~~---~g~~~~ 256 (310)
.+++.+|++++|+|++++.+++....|..++.... ....+.|+++|+||+|+.... ...+++.+.... ..+.++
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~ 148 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFET 148 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEE
Confidence 45679999999999999999998888888776532 112468999999999996321 112333333333 346679
Q ss_pred ccCccCCHHHHHHHHhhccCC
Q 021615 257 TSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~~~ 277 (310)
||+++.|++++|..+...+..
T Consensus 149 Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 149 SAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999876643
No 35
>PRK00089 era GTPase Era; Reviewed
Probab=99.84 E-value=5.6e-20 Score=168.22 Aligned_cols=162 Identities=27% Similarity=0.370 Sum_probs=115.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 181 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~~~ 181 (310)
.|+++|.||||||||+|+|++.+..+ ++.+.||.....+.+.... .++.++||||+.+... .+..+....
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--------~qi~~iDTPG~~~~~~~l~~~~~~~~ 78 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--------AQIIFVDTPGIHKPKRALNRAMNKAA 78 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--------ceEEEEECCCCCCchhHHHHHHHHHH
Confidence 49999999999999999999998654 7788888876655554321 2799999999976432 122333444
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh----cCCCccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK----IGCDKVT 257 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~----~g~~~~s 257 (310)
...+..+|++++|+|+++.... ....+.+.+.. .+.|+++|+||+|+....+......+.+.. ..+..+|
T Consensus 79 ~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~-----~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iS 152 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEKIGP-GDEFILEKLKK-----VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPIS 152 (292)
T ss_pred HHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh-----cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEec
Confidence 5667899999999999873332 22344445543 368999999999998543334444444433 2345689
Q ss_pred cCccCCHHHHHHHHhhccCCcc
Q 021615 258 SETELSSEDAVKSLSTEGGEAD 279 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~~~~~ 279 (310)
++++.|+.+++..+...+.+.+
T Consensus 153 A~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred CCCCCCHHHHHHHHHHhCCCCC
Confidence 9999999999999988775544
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.84 E-value=2.5e-20 Score=155.98 Aligned_cols=158 Identities=12% Similarity=0.073 Sum_probs=108.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|||||||+++|++.+......+..+.+.....+... ... ..+.+|||||+.+.. ....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~----~~~--~~~~l~Dt~g~~~~~-------~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRN----DKR--VKLQIWDTAGQERYR-------TITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC----CEE--EEEEEEECCChHHHH-------HHHH
Confidence 589999999999999999999876433222211111111111111 011 268999999986542 2334
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~sa~ 259 (310)
.+++.+|++++|+|.++..+++.+..|.+++..+.. ...|+++|+||+|+.+.... .+...+.... +.+.++|++
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAK 146 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECC
Confidence 567899999999999998888888888888876543 36899999999999754321 1222222233 346679999
Q ss_pred ccCCHHHHHHHHhhcc
Q 021615 260 TELSSEDAVKSLSTEG 275 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~ 275 (310)
++.|+.++|+.++...
T Consensus 147 ~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 147 ENINVKQVFERLVDII 162 (165)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987643
No 37
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.84 E-value=2.8e-20 Score=161.22 Aligned_cols=156 Identities=13% Similarity=0.142 Sum_probs=108.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCc-eeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~t-T~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.|+++|.+|||||||++++....... .+..| +.......+..+. .. ..+.+|||+|+.++. ..+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~-~~~~Ti~~~~~~~~i~~~~----~~--v~l~iwDtaGqe~~~-------~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCE-ACKSGVGVDFKIKTVELRG----KK--IRLQIWDTAGQERFN-------SITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEEEECC----EE--EEEEEEeCCCchhhH-------HHHH
Confidence 58999999999999999999765322 22211 1222222222221 11 278999999986552 1233
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH----HHHHHHHHHhcCCCcccc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----LQSLTEEILKIGCDKVTS 258 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~----~~~l~~~l~~~g~~~~sa 258 (310)
.+++.||++++|+|+++..+++....|...+..+.. .+.|+++|+||+|+....+. .+.+.+.+..+.+.++||
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~--~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSA 145 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASA 145 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecC
Confidence 456799999999999999999999999888876542 46899999999999653322 222222222334667999
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|++++|..++...
T Consensus 146 ktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 146 KDNFNVDEIFLKLVDDI 162 (202)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987655
No 38
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.84 E-value=3.6e-20 Score=162.12 Aligned_cols=163 Identities=13% Similarity=0.024 Sum_probs=111.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|||||||+++|++........+..+.+.....+..... . ...+.+|||||+..+ ..+ +.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~---~--~~~~~i~Dt~G~~~~----~~l---~~ 68 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN---L--NVTLQVWDIGGQSIG----GKM---LD 68 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC---C--EEEEEEEECCCcHHH----HHH---HH
Confidence 37999999999999999999987543222333333333333332211 0 127899999997543 122 23
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCcccc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS 258 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~sa 258 (310)
.+++.+|++++|+|++++.+++....|..++..+... ....|+++|+||+|+..... ..+......... .+.++||
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSA 148 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSA 148 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEEC
Confidence 4467899999999999999999998898888876432 22457999999999974321 112222222233 3566899
Q ss_pred CccCCHHHHHHHHhhccCC
Q 021615 259 ETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~~~ 277 (310)
+++.|++++|+.++.....
T Consensus 149 ktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 149 KTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999876543
No 39
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.84 E-value=2.5e-20 Score=155.73 Aligned_cols=153 Identities=19% Similarity=0.235 Sum_probs=105.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC----CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i----~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
+|+++|++|+|||||+++|++..... .....+|.....+.+.++. ..+.+|||||+.+. ..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~-------~~ 65 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN--------ARLKFWDLGGQESL-------RS 65 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC--------EEEEEEECCCChhh-------HH
Confidence 48999999999999999998754321 2233455555555555432 27999999998654 22
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh---------
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--------- 250 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--------- 250 (310)
.+..++..+|++++|+|+++.........+...+... ....+.|+++|+||+|+..... .+++.+.+..
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRN-EALEGVPLLILANKQDLPDALS-VEEIKEVFQDKAEEIGRRD 143 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEEccccccCCC-HHHHHHHhccccccccCCc
Confidence 3445678999999999998876666665555554432 1124789999999999876422 2333333321
Q ss_pred cCCCccccCccCCHHHHHHHHhh
Q 021615 251 IGCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 251 ~g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
..+..+||+++.|+++++++|+.
T Consensus 144 ~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 144 CLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred eEEEEeeCCCCcCHHHHHHHHhc
Confidence 23556899999999999999864
No 40
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=5.4e-20 Score=176.99 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=116.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH--
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-- 178 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~-- 178 (310)
..+|+++|.+|+|||||+|+|++.+.. +.+.++||.++....+.... ..+.+|||||+.+.......+.
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~~e~~ 243 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--------KKYLLIDTAGIRRKGKVTEGVEKY 243 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--------cEEEEEECCCccccccchhhHHHH
Confidence 468999999999999999999988754 47889999887666665432 2689999999977654332222
Q ss_pred --HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH----h--
Q 021615 179 --RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----K-- 250 (310)
Q Consensus 179 --~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~----~-- 250 (310)
...+.+++.||++++|+|++++.+.++... ...+.. .++|+++|+||+|+....+..+.+.+.+. .
T Consensus 244 ~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~-~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 317 (429)
T TIGR03594 244 SVLRTLKAIERADVVLLVLDATEGITEQDLRI-AGLILE-----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLD 317 (429)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHH-----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCC
Confidence 122456789999999999998877776543 344443 36899999999999833333444444443 2
Q ss_pred -cCCCccccCccCCHHHHHHHHhhcc
Q 021615 251 -IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 251 -~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
..+.++||+++.|+.++|..+....
T Consensus 318 ~~~vi~~SA~~g~~v~~l~~~i~~~~ 343 (429)
T TIGR03594 318 FAPIVFISALTGQGVDKLLDAIDEVY 343 (429)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 2455689999999999999876543
No 41
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.84 E-value=3.4e-20 Score=152.64 Aligned_cols=151 Identities=23% Similarity=0.317 Sum_probs=108.1
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHHHHHH
Q 021615 106 GLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNFLR 183 (310)
Q Consensus 106 ~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~~~~~ 183 (310)
+++|.+|||||||+|+|++.... +++.+.+|............ ..+.+|||||+.+... ....+...+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~i~DtpG~~~~~~~~~~~~~~~~~~ 72 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--------REFILIDTGGIEPDDEGISKEIREQAEL 72 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--------eEEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 47999999999999999987643 36778888776665554432 2789999999977533 12223444556
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC---CCccccCc
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVTSET 260 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g---~~~~sa~~ 260 (310)
.++.+|++++|+|+.+.....+.. +...+.. .+.|+++|+||+|+...... ...+...+ +..+|+++
T Consensus 73 ~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~-----~~~piiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~Sa~~ 142 (157)
T cd01894 73 AIEEADVILFVVDGREGLTPADEE-IAKYLRK-----SKKPVILVVNKVDNIKEEDE----AAEFYSLGFGEPIPISAEH 142 (157)
T ss_pred HHHhCCEEEEEEeccccCCccHHH-HHHHHHh-----cCCCEEEEEECcccCChHHH----HHHHHhcCCCCeEEEeccc
Confidence 678899999999998755444432 3344544 35899999999999876433 22333343 35689999
Q ss_pred cCCHHHHHHHHhhc
Q 021615 261 ELSSEDAVKSLSTE 274 (310)
Q Consensus 261 ~~gi~~l~~~l~~~ 274 (310)
+.|++++++.+.+.
T Consensus 143 ~~gv~~l~~~l~~~ 156 (157)
T cd01894 143 GRGIGDLLDAILEL 156 (157)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998653
No 42
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.84 E-value=3.1e-20 Score=156.27 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=106.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
+|+++|.+|||||||+++|++... .. +.+|.......+.+.. ..+.+|||||+.+.. ..+..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~--------~~i~l~Dt~G~~~~~-------~~~~~ 62 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKN--------LKFTIWDVGGKHKLR-------PLWKH 62 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECC--------EEEEEEECCCChhcc-------hHHHH
Confidence 589999999999999999998742 12 2344433333343322 278999999986542 23445
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--h------cCCCc
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--K------IGCDK 255 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~------~g~~~ 255 (310)
+++.+|++++|+|++++.++.....++..+.... ...+.|+++|+||+|+..... .+++.+.+. . ..+.+
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 140 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEK-ELRDALLLIFANKQDVAGALS-VEEMTELLSLHKLCCGRSWYIQG 140 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCh-hhCCCCEEEEEeCcCcccCCC-HHHHHHHhCCccccCCCcEEEEe
Confidence 6678999999999998877777766666654321 223589999999999965321 233333322 1 12445
Q ss_pred cccCccCCHHHHHHHHhhccCC
Q 021615 256 VTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
+||+++.|++++|.+|+....+
T Consensus 141 ~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 141 CDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred CcCCCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999876544
No 43
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.84 E-value=2.6e-20 Score=155.67 Aligned_cols=159 Identities=17% Similarity=0.124 Sum_probs=109.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.+||+++|.+|||||||++++.+........+..+.+.....+.... .. ..+.+|||||+.... ...
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~i~D~~G~~~~~-------~~~ 68 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG----KT--IKLQIWDTAGQERFR-------TIT 68 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC----EE--EEEEEEECCCcHhHH-------HHH
Confidence 36899999999999999999998764433223222222222222111 11 268999999976542 122
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~sa 258 (310)
..+++.+|++++|+|+++..++..+..|..++..+.. .+.|+++|+||+|+...... .++....... ..+.++|+
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSA 146 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence 3456789999999999998888888888888877642 36899999999998654221 1222222232 34566999
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|+.++|..+++..
T Consensus 147 ~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 147 KNATNVEQAFMTMAREI 163 (166)
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999987644
No 44
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.84 E-value=4.4e-20 Score=154.78 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=110.0
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||++++++........+..+.+.....+.... .. ..+.+|||||+.... ...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~----~~--~~l~l~D~~g~~~~~-------~~~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDG----KK--IKLQIWDTAGQERFR-------TIT 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECC----EE--EEEEEEeCCchHHHH-------HHH
Confidence 46899999999999999999998764332222222211112222111 11 268999999976542 223
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa 258 (310)
..+++.+|++++|+|++++.+++.+..|..++..+.. .+.|+++|+||+|+.+... ..+........ ..+.++|+
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSA 147 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 3556789999999999998888888888888877542 4689999999999975321 12223333333 34577999
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|+.++|..++...
T Consensus 148 ~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 148 KANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987654
No 45
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.84 E-value=6.8e-20 Score=151.64 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=106.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|||||||+++|++.+.. ..+..|+.......+..+. .. ..+.+|||||..+.. . .+.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~----~---l~~ 67 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDG----ET--CLLDILDTAGQEEYS----A---MRD 67 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEEECC----EE--EEEEEEECCCCcchH----H---HHH
Confidence 47999999999999999999987532 2232222211111222111 11 157899999986542 2 233
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc--CCCccccCc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVTSET 260 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~--g~~~~sa~~ 260 (310)
.+++.+|++++|+|.++..+++....|...+..+.. ..+.|+++|+||+|+...........+..... .+.++|+++
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKT 146 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCC
Confidence 456689999999999988888888777777766532 23689999999999976432223333333333 455699999
Q ss_pred cCCHHHHHHHHhhc
Q 021615 261 ELSSEDAVKSLSTE 274 (310)
Q Consensus 261 ~~gi~~l~~~l~~~ 274 (310)
+.|++++|..++..
T Consensus 147 ~~gi~~l~~~l~~~ 160 (162)
T cd04138 147 RQGVEEAFYTLVRE 160 (162)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998653
No 46
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.84 E-value=3.2e-20 Score=172.28 Aligned_cols=111 Identities=38% Similarity=0.680 Sum_probs=89.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC---------CCCccCCCceEEEeCCCCCccccC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT---------LGAEKYSSEATLADLPGLIEGAHL 173 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~---------~~~~~~~~~~~i~DtPG~~~~~~~ 173 (310)
.+|++||.||||||||+|+|++.++.+++|||||++|+.|.+..... .+.......+.++||||+.++++.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 57999999999999999999999988899999999999998875431 000011125899999999999888
Q ss_pred CchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHH
Q 021615 174 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEEL 213 (310)
Q Consensus 174 ~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l 213 (310)
+.+++..|+.++++||++++|||++. .++..+++.+..||
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL 132 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTEL 132 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 88999999999999999999999853 24555555555554
No 47
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.84 E-value=2.8e-20 Score=155.67 Aligned_cols=157 Identities=19% Similarity=0.102 Sum_probs=107.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee-eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~-~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.||+++|.+|||||||++++.+.... ..++.|+. +.....+... ... ..+.+|||||..+. ....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~----~~~--~~l~i~Dt~G~~~~-------~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVN----GQK--IKLQIWDTAGQERF-------RAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCcccceeEEEEEEEEC----CEE--EEEEEEECCCcHHH-------HHHH
Confidence 68999999999999999999977532 22332221 1111112111 111 16899999998554 2233
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa 258 (310)
..+++.+|++++|+|++++.+++.+..|...+..... .+.|+++|+||+|+....+ ..++..+.... ..+.++||
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 146 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSA 146 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEEC
Confidence 4556799999999999999999988888887765432 3589999999999975432 12233333333 34566999
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|+.++|..++...
T Consensus 147 ~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 147 KTGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887543
No 48
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=5.6e-20 Score=178.75 Aligned_cols=187 Identities=21% Similarity=0.239 Sum_probs=124.2
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch--H
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG--L 177 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~--l 177 (310)
..++|+++|.||||||||+|+|++.+.. ++++++||.++....+.... ..+.+|||||+.+......+ .
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--------~~~~l~DTaG~~~~~~~~~~~e~ 281 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--------KTWRFVDTAGLRRRVKQASGHEY 281 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--------EEEEEEECCCccccccccchHHH
Confidence 3579999999999999999999998754 48899999987766665432 26899999998654322111 1
Q ss_pred HHH--HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHHHHHhc-
Q 021615 178 GRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEILKI- 251 (310)
Q Consensus 178 ~~~--~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~~l~~~- 251 (310)
-.. ...+++.+|++++|+|+++..+.++...+ ..+.. .++|+++|+||+|+...... ..++.+.+...
T Consensus 282 ~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~-~~~~~-----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~ 355 (472)
T PRK03003 282 YASLRTHAAIEAAEVAVVLIDASEPISEQDQRVL-SMVIE-----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVP 355 (472)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHH-HHHHH-----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCC
Confidence 111 12346789999999999998887776543 44433 37899999999999754221 12233333322
Q ss_pred --CCCccccCccCCHHHHHHHHhhccCCcccccccccccchhhhhhhhcCCC
Q 021615 252 --GCDKVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPRP 301 (310)
Q Consensus 252 --g~~~~sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~le~~~~p 301 (310)
.+..+||+++.|++++|..++.........-............++..|.|
T Consensus 356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p 407 (472)
T PRK03003 356 WAPRVNISAKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPP 407 (472)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC
Confidence 34458999999999999998775544333222222233333334444444
No 49
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.84 E-value=7.9e-20 Score=152.14 Aligned_cols=160 Identities=14% Similarity=0.076 Sum_probs=107.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||+++|++.+......+..+.+.....+.... .. ..+.+|||||..++. ....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~-------~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRN----KE--VRVNFFDLSGHPEYL-------EVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC----eE--EEEEEEECCccHHHH-------HHHH
Confidence 3799999999999999999998763222112111111111222111 11 278999999985442 1223
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC---CCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCcc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD---YLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKV 256 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~---~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~ 256 (310)
.+++.+|++++|+|++++.+++....|..++..+... ..+.|+++|+||+|+..... ..+........ ..+.++
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFET 147 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEE
Confidence 3457899999999999988888888888888776432 24689999999999973211 12222222233 345679
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
|++++.|++++|+.+....
T Consensus 148 Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 148 SACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999986543
No 50
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.84 E-value=1.5e-20 Score=181.34 Aligned_cols=157 Identities=25% Similarity=0.272 Sum_probs=115.6
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 176 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~ 176 (310)
.++..++|+++|+||||||||+|+|++.+.. ++++++||.+.....+..... ++.+|||||+.+....-+.
T Consensus 211 ~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--------~i~l~DT~G~~~~~~~ie~ 282 (449)
T PRK05291 211 ILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--------PLRLIDTAGIRETDDEVEK 282 (449)
T ss_pred HhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--------EEEEEeCCCCCCCccHHHH
Confidence 3456789999999999999999999998764 488999998877766664432 7899999999754221111
Q ss_pred HH-HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCc
Q 021615 177 LG-RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDK 255 (310)
Q Consensus 177 l~-~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~ 255 (310)
.+ +..+.++..+|++++|+|++++.+.++...|.. ..++|+++|+||+|+....... ......+..
T Consensus 283 ~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~~~~~~-----~~~~~~~i~ 349 (449)
T PRK05291 283 IGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--------LKDKPVIVVLNKADLTGEIDLE-----EENGKPVIR 349 (449)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--------cCCCCcEEEEEhhhccccchhh-----hccCCceEE
Confidence 11 123467889999999999998776665544432 1468999999999997643221 112234566
Q ss_pred cccCccCCHHHHHHHHhhcc
Q 021615 256 VTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~ 275 (310)
+|++++.|++++++.+....
T Consensus 350 iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 350 ISAKTGEGIDELREAIKELA 369 (449)
T ss_pred EEeeCCCCHHHHHHHHHHHH
Confidence 99999999999999987755
No 51
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.84 E-value=7.3e-20 Score=153.67 Aligned_cols=159 Identities=16% Similarity=0.066 Sum_probs=111.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||++++++........+..+.+.....+.... . ...+.+|||||..+. ....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~-------~~~~ 70 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG----K--QIKLQIWDTAGQESF-------RSIT 70 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC----E--EEEEEEEECCCcHHH-------HHHH
Confidence 46899999999999999999998765443333323332222232221 1 126899999997543 2233
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa 258 (310)
..+++.+|++++|+|++++.+++++..|..++..+.. .+.|+++|+||+|+..... ..+........ ..+.++|+
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSA 148 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 4566789999999999998889999889888876532 4689999999999974321 12222223333 45666999
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+.+.|+.++|..+++..
T Consensus 149 ~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 149 KTASNVEEAFINTAKEI 165 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887654
No 52
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=4.4e-20 Score=158.52 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=110.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccce-EeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~-~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.||+++|.+|||||||++++.+.+.....++.|+...... .+..+. . ...+.||||||..... ...
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~-------~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDG----V--KVKLQIWDTAGQERFR-------SVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECC----E--EEEEEEEeCCCcHHHH-------Hhh
Confidence 3799999999999999999998875444444333211111 122111 1 1268999999975431 122
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa 258 (310)
..++..+|++++|+|+++..+++++..|...+..+.. .+.|+++|+||+|+..... ..++....... ..+.++|+
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa 145 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSA 145 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeC
Confidence 3456789999999999998888888888888887643 3689999999999964221 11222222222 35667999
Q ss_pred CccCCHHHHHHHHhhccCC
Q 021615 259 ETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~~~ 277 (310)
+++.|+.++|..++..+..
T Consensus 146 ~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 146 KTGLNVELAFTAVAKELKH 164 (191)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999876644
No 53
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.84 E-value=6.5e-20 Score=152.20 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=99.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
+|+++|.+|||||||+++|++.......+. +|.......+... ...+.+|||||..+.. ..+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~--------~~~~~l~Dt~G~~~~~-------~~~~~ 64 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKG--------NLSFTAFDMSGQGKYR-------GLWEH 64 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEEC--------CEEEEEEECCCCHhhH-------HHHHH
Confidence 489999999999999999998643222221 2222122222211 1278999999986542 23344
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcC-CCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----h--cCCCc
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN-PDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGCDK 255 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~-~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-----~--~g~~~ 255 (310)
+++.+|++++|+|+++..++.....+...+.... ....+.|+++|+||+|+.+... ..++...+. . ..+.+
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 143 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT-AVKITQLLGLENIKDKPWHIFA 143 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC-HHHHHHHhCCccccCceEEEEE
Confidence 5678999999999998776665555555543321 1113689999999999976422 223332222 1 12456
Q ss_pred cccCccCCHHHHHHHHhh
Q 021615 256 VTSETELSSEDAVKSLST 273 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~ 273 (310)
+||+++.|++++|++|+.
T Consensus 144 ~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 144 SNALTGEGLDEGVQWLQA 161 (162)
T ss_pred eeCCCCCchHHHHHHHhc
Confidence 999999999999999864
No 54
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.83 E-value=5.4e-20 Score=153.47 Aligned_cols=153 Identities=20% Similarity=0.134 Sum_probs=104.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceE--eeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR--LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~--v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.||+++|.+|||||||++++++........ .|..+.... +..+ ... ..+.+|||||+..+.. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~--~~~~i~Dt~G~~~~~~-------~ 65 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQL--STYALTLYKHNAKFE----GKT--ILVDFWDTAGQERFQT-------M 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcC--CceeeEEEEEEEEEC----CEE--EEEEEEeCCCchhhhh-------h
Confidence 379999999999999999999765322111 111111111 1111 111 2688999999865421 2
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCcccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTS 258 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa 258 (310)
+..+++.+|++++|+|++++.++++...|..++.... .+.|+++|+||+|+.... ..+....... ..+..+|+
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~Sa 140 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLDPSV--TQKKFNFAEKHNLPLYYVSA 140 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCchhH--HHHHHHHHHHcCCeEEEEeC
Confidence 3345679999999999999888888888888887643 368999999999985432 1222222222 33556999
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|++++|..+....
T Consensus 141 ~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 141 ADGTNVVKLFQDAIKLA 157 (161)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999986544
No 55
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.83 E-value=6.3e-20 Score=157.49 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=110.6
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCc-eeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~t-T~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
...||+++|..|||||||+.++...... .++..+ +.+.....+..+. .. ..+.+|||||+.++. .
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~----~~--~~l~iwDt~G~~~~~-------~ 70 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLDG----RR--VKLQLWDTSGQGRFC-------T 70 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEECC----EE--EEEEEEeCCCcHHHH-------H
Confidence 3478999999999999999999976432 222111 1111111222111 11 278999999986542 2
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc----HhHHHHHHHHHHhcCCCc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA----RDRLQSLTEEILKIGCDK 255 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~----~~~~~~l~~~l~~~g~~~ 255 (310)
.+..+++.+|++++|+|++++.+++.+..|.+++..+. .+.|+++|+||+|+... .+..+.+.+.. .+.+.+
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~-~~~~~e 146 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAFKRQVATEQAQAYAERN-GMTFFE 146 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchhccCCCHHHHHHHHHHc-CCEEEE
Confidence 23345679999999999999999999999999998764 36899999999999652 22233333222 345777
Q ss_pred cccCccCCHHHHHHHHhhcc
Q 021615 256 VTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~ 275 (310)
+||+++.|++++|..++...
T Consensus 147 ~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 147 VSPLCNFNITESFTELARIV 166 (189)
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999987644
No 56
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.83 E-value=1.1e-19 Score=151.14 Aligned_cols=157 Identities=15% Similarity=0.058 Sum_probs=107.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|++|||||||+++|.+........+..+.......+.... .. ..+.+|||||+.+.. ....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~l~l~D~~G~~~~~-------~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGG----KR--VKLQIWDTAGQERFR-------SVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC----EE--EEEEEEECcchHHHH-------HhHH
Confidence 4799999999999999999998764332222222222222222211 11 268999999986542 1233
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~ 259 (310)
.+++.+|++++|+|+++..+++.+..|+.++..+.. .+.|+++|+||+|+....+ ..++....... ..+.++|++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSAL 145 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECC
Confidence 456789999999999998888888888887765532 4689999999999975322 12222333333 445669999
Q ss_pred ccCCHHHHHHHHhhc
Q 021615 260 TELSSEDAVKSLSTE 274 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~ 274 (310)
++.|+.++|..++..
T Consensus 146 ~~~~i~~~~~~~~~~ 160 (161)
T cd04113 146 TGENVEEAFLKCARS 160 (161)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998754
No 57
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.83 E-value=5.1e-20 Score=152.04 Aligned_cols=151 Identities=26% Similarity=0.354 Sum_probs=107.2
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC--chHHHHHHHH
Q 021615 107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRNFLRH 184 (310)
Q Consensus 107 lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~--~~l~~~~~~~ 184 (310)
|+|.+|+|||||+|++++....+..++++|.......+..+. ..+.+|||||+.+..... ..+...++.+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 72 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--------KEIEIVDLPGTYSLSPYSEDEKVARDFLLG 72 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--------eEEEEEECCCccccCCCChhHHHHHHHhcC
Confidence 589999999999999999876668889999988777776542 268999999997654321 2233444433
Q ss_pred hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccCccC
Q 021615 185 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSETEL 262 (310)
Q Consensus 185 l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~~~~ 262 (310)
+.+|++++|+|+.+.... ..+..++.. .++|+++|+||+|+.+.............. ..+.++|+.++.
T Consensus 73 -~~~d~vi~v~d~~~~~~~---~~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 143 (158)
T cd01879 73 -EKPDLIVNVVDATNLERN---LYLTLQLLE-----LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGE 143 (158)
T ss_pred -CCCcEEEEEeeCCcchhH---HHHHHHHHH-----cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCC
Confidence 589999999999874332 233344444 368999999999997653222222222222 346679999999
Q ss_pred CHHHHHHHHhhc
Q 021615 263 SSEDAVKSLSTE 274 (310)
Q Consensus 263 gi~~l~~~l~~~ 274 (310)
|+.+++..+...
T Consensus 144 ~~~~l~~~l~~~ 155 (158)
T cd01879 144 GIDELKDAIAEL 155 (158)
T ss_pred CHHHHHHHHHHH
Confidence 999999998654
No 58
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.83 E-value=8e-20 Score=152.45 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=106.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
+||+++|.+|||||||++++..... ...++.|+.......+.... .. ..+.+|||||+.+... +. .
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~----~~---~ 67 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDG----QQ--CMLEILDTAGTEQFTA----MR---D 67 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECC----EE--EEEEEEECCCcccchh----HH---H
Confidence 5799999999999999999986532 23333333322222222211 11 2678999999866522 22 3
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcccc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 258 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~sa 258 (310)
.+++.+|++++|+|.++..+++....|...+..+.. ..+.|+++|+||+|+.... +....+.+.+ ...+.++||
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (164)
T cd04175 68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQGQNLARQW-GCAFLETSA 145 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhccEEcHHHHHHHHHHh-CCEEEEeeC
Confidence 345689999999999988888888878777765432 2468999999999997532 1122333222 234567999
Q ss_pred CccCCHHHHHHHHhhc
Q 021615 259 ETELSSEDAVKSLSTE 274 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~ 274 (310)
+++.|+.++|..++..
T Consensus 146 ~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 146 KAKINVNEIFYDLVRQ 161 (164)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999998754
No 59
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.83 E-value=1.3e-19 Score=151.11 Aligned_cols=151 Identities=19% Similarity=0.194 Sum_probs=100.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|||||||++++...... . + .+|.......+.... ..+.+|||||+.+. ...+.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~-~-~pt~g~~~~~~~~~~--------~~~~l~D~~G~~~~-------~~~~~ 62 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-T-T-IPTIGFNVETVEYKN--------ISFTVWDVGGQDKI-------RPLWR 62 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-c-c-CCCCCcceEEEEECC--------EEEEEEECCCCHhH-------HHHHH
Confidence 37999999999999999999755422 1 2 223322222233221 27899999998543 22344
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--h---c--CCCc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--K---I--GCDK 255 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~---~--g~~~ 255 (310)
.+++.||++++|+|+++..++.+...++..+.... .....|+++|+||+|+.+... .+++.+.+. . . .+.+
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 140 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNED-ELRDAVLLVFANKQDLPNAMS-AAEVTDKLGLHSLRNRNWYIQA 140 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcH-HhcCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCCEEEEE
Confidence 56789999999999998777777666555543221 223589999999999965322 223333331 1 1 1345
Q ss_pred cccCccCCHHHHHHHHhh
Q 021615 256 VTSETELSSEDAVKSLST 273 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~ 273 (310)
+||++|.|+.++|++|+.
T Consensus 141 ~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 141 TCATSGDGLYEGLDWLSN 158 (159)
T ss_pred eeCCCCCCHHHHHHHHhc
Confidence 899999999999999864
No 60
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.83 E-value=1.6e-19 Score=150.07 Aligned_cols=157 Identities=19% Similarity=0.155 Sum_probs=106.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|+|||||++++++... ...+..|+.......+.... . ...+.+|||||+.+.. .+ ..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~----~~---~~ 68 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDG----Q--WAILDILDTAGQEEFS----AM---RE 68 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECC----E--EEEEEEEECCCCcchh----HH---HH
Confidence 5899999999999999999997653 23333333221111221111 1 1268899999986552 22 23
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~ 259 (310)
.+++.+|++++|+|+++..+++....|..++..... ..+.|+++|+||+|+..... ..+...+.... ..+.++||+
T Consensus 69 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (164)
T cd04145 69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAK 147 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCC
Confidence 456689999999999998888888888777765421 23689999999999975422 11222333333 345669999
Q ss_pred ccCCHHHHHHHHhhc
Q 021615 260 TELSSEDAVKSLSTE 274 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~ 274 (310)
++.|+.++|+.++..
T Consensus 148 ~~~~i~~l~~~l~~~ 162 (164)
T cd04145 148 DRLNVDKAFHDLVRV 162 (164)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998654
No 61
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=8.1e-20 Score=152.93 Aligned_cols=160 Identities=19% Similarity=0.127 Sum_probs=109.2
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
+..++|+++|.+|||||||++++++........+..+.+.....+.... .. ..+.+|||||+.+.. .
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~~~D~~g~~~~~-------~ 71 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKG----EK--IKLQIWDTAGQERFR-------S 71 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECC----EE--EEEEEEECCCcHHHH-------H
Confidence 4568899999999999999999996653322222222222222232221 11 157899999985442 2
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh---cCCCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~---~g~~~~ 256 (310)
.....+..+|++++|+|+++..+++.+..|..++..+.. .+.|+++|+||+|+....+....+.+.+.. ..+.++
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~ 149 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLET 149 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEe
Confidence 233456789999999999988888777778877776542 368999999999997543322233333332 346679
Q ss_pred ccCccCCHHHHHHHHhhc
Q 021615 257 TSETELSSEDAVKSLSTE 274 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~ 274 (310)
|++++.|+.++|..++..
T Consensus 150 Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 150 SAKESDNVEKLFLDLACR 167 (169)
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999998754
No 62
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.83 E-value=1.9e-19 Score=149.53 Aligned_cols=155 Identities=19% Similarity=0.115 Sum_probs=106.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.||+++|++|||||||+++|++..... .+....+.... .+.... .. ..+.+|||||+.+... .
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~--~~~~l~D~~g~~~~~~-------~ 65 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVK--TLTVDG----KK--VKLAIWDTAGQERFRT-------L 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEE--EEEECC----EE--EEEEEEECCCchhhhh-------h
Confidence 379999999999999999999876433 22222222211 121111 11 2689999999865422 2
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hcCCCcccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVTS 258 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~g~~~~sa 258 (310)
....++.+|++++|+|+++..+++.+..|...+..+.. ..+.|+++|+||+|+.......+...+... .+.+.++|+
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (161)
T cd01863 66 TSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSA 144 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEec
Confidence 23445789999999999998888888888888877643 246899999999999743222222222223 345667999
Q ss_pred CccCCHHHHHHHHhh
Q 021615 259 ETELSSEDAVKSLST 273 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~ 273 (310)
+++.|+++++..+..
T Consensus 145 ~~~~gi~~~~~~~~~ 159 (161)
T cd01863 145 KTRDGVQQAFEELVE 159 (161)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999998754
No 63
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.1e-19 Score=153.68 Aligned_cols=160 Identities=20% Similarity=0.168 Sum_probs=121.0
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 176 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~ 176 (310)
...+++|+++|.+|||||+|+.++......... -+|+ +-...++..+. . ..++++|||+|+.++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~--~sTiGIDFk~kti~l~g----~--~i~lQiWDtaGQerf------ 74 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSF--ISTIGIDFKIKTIELDG----K--KIKLQIWDTAGQERF------ 74 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCc--cceEEEEEEEEEEEeCC----e--EEEEEEEEcccchhH------
Confidence 356789999999999999999999977532211 1222 22233333332 1 237899999999776
Q ss_pred HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcC
Q 021615 177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIG 252 (310)
Q Consensus 177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g 252 (310)
...+.++++.|+++++|||.++..+++.+..|++.++++.+ .+.|.++|+||+|+.... ++.+.+...+ ...
T Consensus 75 -~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~--~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~-G~~ 150 (207)
T KOG0078|consen 75 -RTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHAS--DDVVKILVGNKCDLEEKRQVSKERGEALAREY-GIK 150 (207)
T ss_pred -HHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCC--CCCcEEEeeccccccccccccHHHHHHHHHHh-CCe
Confidence 33556677899999999999999999999999999999876 479999999999998743 3445555444 345
Q ss_pred CCccccCccCCHHHHHHHHhhccC
Q 021615 253 CDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+.++||+++.++.+.|..|++...
T Consensus 151 F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 151 FFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred EEEccccCCCCHHHHHHHHHHHHH
Confidence 667999999999999999988664
No 64
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.83 E-value=1.1e-19 Score=152.04 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=104.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||++++++...... +..|+.......+.... . ...+.+|||||+.++.. +. .
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~~~~----~~---~ 67 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCSK----N--ICTLQITDTTGSHQFPA----MQ---R 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCcchheEEEEEEECC----E--EEEEEEEECCCCCcchH----HH---H
Confidence 5799999999999999999998763221 11111111111111110 1 12689999999976521 22 2
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHH--hcCCCcccc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDKVTS 258 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~--~~g~~~~sa 258 (310)
.++..+|++++|+|+++..+++....|++.+..+.. ...+.|+++|+||+|+....+. .+....... ...+.++||
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 147 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSA 147 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeec
Confidence 345689999999999999888888888877766432 1246899999999999753221 111111122 345667999
Q ss_pred CccCCHHHHHHHHhh
Q 021615 259 ETELSSEDAVKSLST 273 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~ 273 (310)
+++.|+.++|+.+..
T Consensus 148 ~~g~~v~~~f~~l~~ 162 (165)
T cd04140 148 KTNHNVQELFQELLN 162 (165)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999999753
No 65
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.83 E-value=9.7e-20 Score=153.29 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=100.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|+..... . + .+|.......+.... ..+.+|||||+.+. ...+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~-~-~~t~g~~~~~~~~~~--------~~~~l~Dt~G~~~~-------~~~~ 70 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-T-T-IPTVGFNVETVTYKN--------VKFNVWDVGGQDKI-------RPLW 70 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-c-c-cCCcccceEEEEECC--------EEEEEEECCCCHHH-------HHHH
Confidence 368999999999999999999865421 1 1 122222222232221 27999999998543 2233
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----h--cCCC
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGCD 254 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-----~--~g~~ 254 (310)
..+++.||++++|+|++++.+++....++.++... ....+.|+++|+||+|+.... ..+++.+.+. . ..+.
T Consensus 71 ~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~ 148 (168)
T cd04149 71 RHYYTGTQGLIFVVDSADRDRIDEARQELHRIIND-REMRDALLLVFANKQDLPDAM-KPHEIQEKLGLTRIRDRNWYVQ 148 (168)
T ss_pred HHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcC-HhhcCCcEEEEEECcCCccCC-CHHHHHHHcCCCccCCCcEEEE
Confidence 44567999999999999877776665554444321 112468999999999987532 1233333332 1 1245
Q ss_pred ccccCccCCHHHHHHHHhh
Q 021615 255 KVTSETELSSEDAVKSLST 273 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~ 273 (310)
++||+++.|+.++|.+|+.
T Consensus 149 ~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 149 PSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EeeCCCCCChHHHHHHHhc
Confidence 6899999999999999864
No 66
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=9.7e-20 Score=177.08 Aligned_cols=159 Identities=22% Similarity=0.246 Sum_probs=114.3
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGL 177 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l 177 (310)
...++|+|||.||||||||+|+|++.... +.+.+++|.+...+.+.... ..+.+|||||+..... ....+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~~ 107 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--------RRFTVVDTGGWEPDAKGLQASV 107 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--------cEEEEEeCCCcCCcchhHHHHH
Confidence 34588999999999999999999998754 47888888876666554432 2689999999864221 11223
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC---C
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---D 254 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~---~ 254 (310)
...+..+++.||++++|+|+++..+..+ ..+.+.+.. .++|+++|+||+|+....... ..+...++ .
T Consensus 108 ~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-----~~~piilV~NK~Dl~~~~~~~----~~~~~~g~~~~~ 177 (472)
T PRK03003 108 AEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR-----SGKPVILAANKVDDERGEADA----AALWSLGLGEPH 177 (472)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECccCCccchhh----HHHHhcCCCCeE
Confidence 3344556789999999999998766544 445556654 379999999999987532211 12223333 3
Q ss_pred ccccCccCCHHHHHHHHhhccC
Q 021615 255 KVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
.+||+++.|+.++++.+.....
T Consensus 178 ~iSA~~g~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 178 PVSALHGRGVGDLLDAVLAALP 199 (472)
T ss_pred EEEcCCCCCcHHHHHHHHhhcc
Confidence 5999999999999999887653
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.83 E-value=1.3e-19 Score=150.94 Aligned_cols=158 Identities=17% Similarity=0.136 Sum_probs=105.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|||||||++++++..... .+..|+.......+..+. .. ..+.+|||||+.+.. .+ ..
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~g~~~~~----~~---~~ 66 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSYRKQIEIDG----EV--CLLDILDTAGQEEFS----AM---RD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhEEEEEEECC----EE--EEEEEEECCCcccch----HH---HH
Confidence 379999999999999999999865322 222222211111111111 11 268899999987652 12 23
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~ 259 (310)
.++..+|++++|+|+++..+++.+..|...+..... ..+.|+++|+||+|+..... ..+........ ..+.++||+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAK 145 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecC
Confidence 346689999999999998888888777776655332 13689999999999975321 11222222223 446679999
Q ss_pred ccCCHHHHHHHHhhcc
Q 021615 260 TELSSEDAVKSLSTEG 275 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~ 275 (310)
++.|++++|+.+....
T Consensus 146 ~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 146 ERVNVDEAFYDLVREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987643
No 68
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.82 E-value=6.8e-20 Score=157.18 Aligned_cols=159 Identities=14% Similarity=0.097 Sum_probs=107.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
+|+++|.+|||||||+++|...... ..++.|+.......+..+. .. ..+.+|||||..+... ....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~-------~~~~ 66 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVVDG----QP--CMLEVLDTAGQEEYTA-------LRDQ 66 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEECC----EE--EEEEEEECCCchhhHH-------HHHH
Confidence 5899999999999999999976532 2233333221111121111 11 1588999999865422 2234
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCccccC
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~sa~ 259 (310)
+++.+|++++|+|.++..+++.+..|+..+...... ..+.|+++|+||+|+...... .....+.... ..+.++||+
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk 146 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAK 146 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCC
Confidence 567899999999999998888888888888765321 246899999999999643221 1112222222 346679999
Q ss_pred ccCCHHHHHHHHhhccC
Q 021615 260 TELSSEDAVKSLSTEGG 276 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~~ 276 (310)
++.|+.++|..++....
T Consensus 147 ~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 147 TNVNVERAFYTLVRALR 163 (190)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987553
No 69
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.82 E-value=1e-19 Score=154.25 Aligned_cols=155 Identities=16% Similarity=0.148 Sum_probs=105.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|||||||++++..... ..++..|........+... +..+ .+.+|||||+.++.. ...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~~~----~~~~--~l~i~Dt~G~~~~~~-------~~~ 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIG----GEPY--TLGLFDTAGQEDYDR-------LRP 67 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEEEC----CEEE--EEEEEECCCccchhh-------hhh
Confidence 5799999999999999999997653 2223222222111122211 1112 688999999976522 112
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH----------------HHHHH
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----------------LQSLT 245 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~----------------~~~l~ 245 (310)
.+++.+|++++|+|.+++.+++... .|..++..+. .+.|+++|+||+|+....+. ...+.
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 3566899999999999999998885 5777777654 36899999999998654221 11122
Q ss_pred HHHHhcCCCccccCccCCHHHHHHHHhhc
Q 021615 246 EEILKIGCDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 246 ~~l~~~g~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
+.+....+.++||+++.|++++|+.++..
T Consensus 145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 145 RDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 22222456779999999999999988654
No 70
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.82 E-value=1.4e-19 Score=150.72 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=106.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC-CCCCCCCCcee-eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~-~~i~~~~~tT~-~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.||+++|.+|||||||+++|.+.. .....+..|+- +.....+... .... ..+.+|||||+.... ..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~--~~l~i~Dt~G~~~~~-------~~ 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVD---TDNT--VELFIFDSAGQELYS-------DM 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeC---CCCE--EEEEEEECCCHHHHH-------HH
Confidence 379999999999999999998642 22344444432 1111122221 1111 278999999975431 12
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHH-HHHHHh--cCCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL-TEEILK--IGCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l-~~~l~~--~g~~~~s 257 (310)
...+++.+|++++|+|+++..+++.+..|.+.+..+. .+.|+++|+||+|+.+..+..... ...... ..+.++|
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 145 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTS 145 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEe
Confidence 3345678999999999999888888888888887654 368999999999996542211111 111122 3455799
Q ss_pred cCccCCHHHHHHHHhhc
Q 021615 258 SETELSSEDAVKSLSTE 274 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~ 274 (310)
++++.|++++|+.++..
T Consensus 146 a~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 146 ALRGVGYEEPFESLARA 162 (164)
T ss_pred CCCCCChHHHHHHHHHH
Confidence 99999999999998764
No 71
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.82 E-value=4.1e-19 Score=147.41 Aligned_cols=150 Identities=22% Similarity=0.167 Sum_probs=99.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.|+++|.+|||||||+++|++..... ...+.+|.......+.... +..+.+|||||+.++ ...
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~~~DtpG~~~~-------~~~ 67 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-------GKRLGFIDVPGHEKF-------IKN 67 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-------CcEEEEEECCChHHH-------HHH
Confidence 58999999999999999999754222 2234566655544443321 127899999998543 233
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHh-----cC
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILK-----IG 252 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~-----~g 252 (310)
+...+..+|++++|+|+++....+....+ ..+... ..+|+++|+||+|+..... ..+++.+.+.. ..
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~-~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHL-EILELL----GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAP 142 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHH-HHHHHh----CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 44567789999999999863222222222 223321 1249999999999976421 23444455543 34
Q ss_pred CCccccCccCCHHHHHHHHh
Q 021615 253 CDKVTSETELSSEDAVKSLS 272 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~ 272 (310)
+.++|++++.|+++++..+.
T Consensus 143 ~~~~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 143 IFPVSAVTGEGIEELKEYLD 162 (164)
T ss_pred EEEEeCCCCcCHHHHHHHHh
Confidence 55689999999999998874
No 72
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.82 E-value=1.8e-19 Score=149.62 Aligned_cols=157 Identities=15% Similarity=0.082 Sum_probs=105.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|+|||||++++++........+..+.+.....+..... .. ...+.+|||||+.++. ....
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~--~~~~~i~D~~G~~~~~-------~~~~ 69 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQS--DE--DVRLMLWDTAGQEEFD-------AITK 69 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCC--CC--EEEEEEeeCCchHHHH-------HhHH
Confidence 37999999999999999999987532211111112111112222100 01 1268999999986542 2234
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~sa~ 259 (310)
.+++.+|++++|+|++++.+++.+..|...+.... .+.|+++|+||+|+..... ..++..+..... .+.++|++
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 146 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVK 146 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECC
Confidence 45679999999999999888888888888776543 3789999999999865322 112222223333 45569999
Q ss_pred ccCCHHHHHHHHhh
Q 021615 260 TELSSEDAVKSLST 273 (310)
Q Consensus 260 ~~~gi~~l~~~l~~ 273 (310)
++.|++++|..++.
T Consensus 147 ~~~~v~~l~~~l~~ 160 (162)
T cd04106 147 DDFNVTELFEYLAE 160 (162)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999999864
No 73
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.82 E-value=2.3e-19 Score=149.00 Aligned_cols=158 Identities=19% Similarity=0.147 Sum_probs=109.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|||||||+++|++........+..+.......+.... .. ..+.+|||||..+.. ....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~l~D~~G~~~~~-------~~~~ 67 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDG----KR--VKLQIWDTAGQERFR-------SITS 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC----EE--EEEEEEECCChHHHH-------HHHH
Confidence 4799999999999999999998865333333333322222232221 11 268899999975432 2223
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~ 259 (310)
..+..||++++|+|++++.+++.+..|..++..+.. .+.|+++|+||+|+....+ ..+...+.... +.+.++|+.
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 145 (164)
T smart00175 68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAK 145 (164)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCC
Confidence 445689999999999998888888888888877643 3789999999999875321 11222222233 345668999
Q ss_pred ccCCHHHHHHHHhhcc
Q 021615 260 TELSSEDAVKSLSTEG 275 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~ 275 (310)
++.|+.+++..+....
T Consensus 146 ~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 146 TNTNVEEAFEELAREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987654
No 74
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.82 E-value=1.7e-19 Score=152.18 Aligned_cols=151 Identities=20% Similarity=0.217 Sum_probs=102.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|++|||||||+++|++..... + .+|.......+.... ..+.+|||||+... ...+.
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~~~--~-~~t~g~~~~~~~~~~--------~~l~l~D~~G~~~~-------~~~~~ 76 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDIDT--I-SPTLGFQIKTLEYEG--------YKLNIWDVGGQKTL-------RPYWR 76 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCC--c-CCccccceEEEEECC--------EEEEEEECCCCHHH-------HHHHH
Confidence 679999999999999999999874321 1 112211222222221 26899999998543 22344
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------hcCCCc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDK 255 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~~g~~~ 255 (310)
.+++.+|++++|+|+++..++.....+...+.... ...+.|+++|+||+|+.... ..+++.+.+. ...+.+
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (173)
T cd04154 77 NYFESTDALIWVVDSSDRLRLDDCKRELKELLQEE-RLAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRIQP 154 (173)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEEEe
Confidence 56779999999999998877776655555553321 12478999999999997542 2233443332 224667
Q ss_pred cccCccCCHHHHHHHHhh
Q 021615 256 VTSETELSSEDAVKSLST 273 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~ 273 (310)
+||+++.|++++|.+++.
T Consensus 155 ~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 155 CSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ccCCCCcCHHHHHHHHhc
Confidence 999999999999998754
No 75
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.82 E-value=2.1e-19 Score=149.92 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=107.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeecc--ceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN--LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~--~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.+|+++|.+|+|||||++++++...... +.+|.... ...+.... .. ..+.+|||||..+... .
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~----~~--~~l~i~D~~g~~~~~~-------~ 65 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS--HISTIGVDFKMKTIEVDG----IK--VRIQIWDTAGQERYQT-------I 65 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEECC----EE--EEEEEEeCCCcHhHHh-------h
Confidence 3799999999999999999997753222 12232221 12222211 11 2688999999865422 2
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV 256 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~ 256 (310)
...++..+|++++|+|.++..+++....|.+++..+.. .+.|+++|+||+|+.... +....+.+.+ ...+.++
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~ 142 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQKRQVGDEQGNKLAKEY-GMDFFET 142 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCCCHHHHHHHHHHc-CCEEEEE
Confidence 23456789999999999999999999888888876542 368999999999986543 2233333222 2457779
Q ss_pred ccCccCCHHHHHHHHhh
Q 021615 257 TSETELSSEDAVKSLST 273 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~ 273 (310)
||+++.|++++|..|+.
T Consensus 143 Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 143 SACTNSNIKESFTRLTE 159 (161)
T ss_pred eCCCCCCHHHHHHHHHh
Confidence 99999999999999865
No 76
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.82 E-value=2e-19 Score=152.08 Aligned_cols=152 Identities=18% Similarity=0.131 Sum_probs=103.0
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|++|+|||||+++|+..+... ..+|...+...+.... ..+.+|||||+.+. ...+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~---~~~t~~~~~~~~~~~~--------~~~~l~D~~G~~~~-------~~~~ 76 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH---TSPTIGSNVEEIVYKN--------IRFLMWDIGGQESL-------RSSW 76 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC---cCCccccceEEEEECC--------eEEEEEECCCCHHH-------HHHH
Confidence 4689999999999999999998765321 1234433333443332 27899999998543 3345
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----h--cCCC
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----K--IGCD 254 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-----~--~g~~ 254 (310)
..+++.||++++|+|+++...+.....++.++.... ...+.|+++++||+|+..... .+++.+.+. . ..+.
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~-~~~~~p~viv~NK~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~ 154 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHE-DLRKAVLLVLANKQDLKGAMT-PAEISESLGLTSIRDHTWHIQ 154 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEEE
Confidence 566789999999999998766655544444433221 224689999999999875321 233333332 1 1245
Q ss_pred ccccCccCCHHHHHHHHhh
Q 021615 255 KVTSETELSSEDAVKSLST 273 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~ 273 (310)
++||+++.|++++|+.|+.
T Consensus 155 ~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 155 GCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ecccCCCCCHHHHHHHHhc
Confidence 6999999999999999864
No 77
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=1.1e-19 Score=169.90 Aligned_cols=185 Identities=19% Similarity=0.240 Sum_probs=130.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc----
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK---- 175 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~---- 175 (310)
...+|+++|.||+|||||+|+|++.+..+ ++.++||+++....+..+.. ++.++||+|+.+......
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--------~~~liDTAGiRrk~ki~e~~E~ 248 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--------KYVLIDTAGIRRKGKITESVEK 248 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--------EEEEEECCCCCcccccccceEE
Confidence 46889999999999999999999998776 99999999988777775532 799999999976533222
Q ss_pred -hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-hHHHHHHH----HHH
Q 021615 176 -GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTE----EIL 249 (310)
Q Consensus 176 -~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~l~~----~l~ 249 (310)
+.. ..+..+++||++++|+|++.+.+.++.+.. ..+.. .++++++|+||+|+.+.+ ...+.+.+ .+.
T Consensus 249 ~Sv~-rt~~aI~~a~vvllviDa~~~~~~qD~~ia-~~i~~-----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~ 321 (444)
T COG1160 249 YSVA-RTLKAIERADVVLLVIDATEGISEQDLRIA-GLIEE-----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLP 321 (444)
T ss_pred Eeeh-hhHhHHhhcCEEEEEEECCCCchHHHHHHH-HHHHH-----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhc
Confidence 222 335778999999999999998888776544 44443 479999999999997642 23344433 333
Q ss_pred hcCCC---ccccCccCCHHHHHHHHhhccCCcccccccccccchhhhhhhhcCC
Q 021615 250 KIGCD---KVTSETELSSEDAVKSLSTEGGEADLLSSVTSVKDKRDKEIEDYPR 300 (310)
Q Consensus 250 ~~g~~---~~sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~le~~~~ 300 (310)
.+++. .+||+++.++..+|+.+..........-.........+......|+
T Consensus 322 ~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~~pP 375 (444)
T COG1160 322 FLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAKHPP 375 (444)
T ss_pred cccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCC
Confidence 34433 3899999999999988655443333333333333344444444443
No 78
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.82 E-value=3.4e-19 Score=149.51 Aligned_cols=160 Identities=16% Similarity=0.086 Sum_probs=107.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|+|||||++++.+........+..+.......+..+. .. ..+.+|||||+.+.. ...
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~l~i~D~~G~~~~~-------~~~ 71 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG----HF--VTLQIWDTAGQERFR-------SLR 71 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECC----eE--EEEEEEeCCChHHHH-------HhH
Confidence 46899999999999999999997653322222111111111222111 11 268899999986542 123
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC--CCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc---CCCcc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKIDLPEARDRLQSLTEEILKI---GCDKV 256 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~--~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~---g~~~~ 256 (310)
..+++.+|++++|+|+++..+++.+..|..++..+... ..+.|+++|+||+|+.......++..+..... .+.++
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 151 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFET 151 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEE
Confidence 34567899999999999988888888888877654321 23689999999999864322233333333433 35568
Q ss_pred ccCccCCHHHHHHHHhhc
Q 021615 257 TSETELSSEDAVKSLSTE 274 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~ 274 (310)
||+++.|+.++|..++..
T Consensus 152 Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 152 SAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999998653
No 79
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=2.7e-19 Score=172.46 Aligned_cols=160 Identities=21% Similarity=0.284 Sum_probs=116.2
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH-
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG- 178 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~- 178 (310)
...+|+++|.+|+|||||+|+|++.+.. +++.++||.+.....+.... ..+.+|||||+.+.......+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--------~~~~lvDT~G~~~~~~~~~~~e~ 243 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--------QKYTLIDTAGIRRKGKVTEGVEK 243 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--------eeEEEEECCCCCCCcchhhHHHH
Confidence 4578999999999999999999988754 48889999877655554332 2689999999977654333222
Q ss_pred ---HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH----h-
Q 021615 179 ---RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----K- 250 (310)
Q Consensus 179 ---~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~----~- 250 (310)
...+++++.||++++|+|++++.+.++.. +...+.. .++|+++|+||+|+.+.. ..+++.+.+. .
T Consensus 244 ~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~-----~~~~~ivv~NK~Dl~~~~-~~~~~~~~~~~~l~~~ 316 (435)
T PRK00093 244 YSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE-----AGRALVIVVNKWDLVDEK-TMEEFKKELRRRLPFL 316 (435)
T ss_pred HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCcEEEEEECccCCCHH-HHHHHHHHHHHhcccc
Confidence 22346788999999999999887776654 3344443 368999999999998542 2333433333 2
Q ss_pred --cCCCccccCccCCHHHHHHHHhhcc
Q 021615 251 --IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 251 --~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
..+..+||+++.|+.+++..+....
T Consensus 317 ~~~~i~~~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 317 DYAPIVFISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3455689999999999998876533
No 80
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.82 E-value=1.8e-19 Score=153.54 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=103.0
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++++..... .+ .+|...+...+.... ..+.+|||||+.+. ...+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~-~pt~g~~~~~~~~~~--------~~~~i~D~~Gq~~~-------~~~~ 78 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYKN--------ISFTVWDVGGQDKI-------RPLW 78 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc--cc-cCCcceeEEEEEECC--------EEEEEEECCCCHHH-------HHHH
Confidence 368999999999999999999865421 11 223222222233221 27899999998543 2344
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-------CCC
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCD 254 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-------g~~ 254 (310)
..+++.+|++++|+|+++..++.....++..+.. .....+.|+++|+||+|+....+ .+++.+.+.-. .+.
T Consensus 79 ~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~-~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~l~l~~~~~~~~~~~ 156 (181)
T PLN00223 79 RHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQ 156 (181)
T ss_pred HHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhc-CHhhCCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCceEEE
Confidence 4567899999999999987776655444333321 11224689999999999976532 34445444311 123
Q ss_pred ccccCccCCHHHHHHHHhhcc
Q 021615 255 KVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~ 275 (310)
++||++|+|+.++|++|+...
T Consensus 157 ~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 157 STCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred eccCCCCCCHHHHHHHHHHHH
Confidence 589999999999999997665
No 81
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.82 E-value=2.2e-19 Score=153.58 Aligned_cols=153 Identities=24% Similarity=0.263 Sum_probs=106.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|++|||||||+++|++.... ...+|..+..+.+.... ..+.+|||||+... ...+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~--------~~~~l~D~~G~~~~-------~~~~ 80 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGN--------IKFKTFDLGGHEQA-------RRLW 80 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECC--------EEEEEEECCCCHHH-------HHHH
Confidence 478999999999999999999987642 12335555555555432 27899999997543 2234
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-----------
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK----------- 250 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~----------- 250 (310)
..+++.+|++++|+|+++..++.....+..++.... ...+.|+++|+||+|+..... .+++.+.+..
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDE-ELANVPFLILGNKIDLPGAVS-EEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCc-cccCCCEEEEEeCCCCCCCcC-HHHHHHHhCcccccccccccc
Confidence 556789999999999998766655554544443321 224689999999999975322 2344443321
Q ss_pred -------cCCCccccCccCCHHHHHHHHhhc
Q 021615 251 -------IGCDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 251 -------~g~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
..+..+||+++.|++++|.+++..
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 235568999999999999998653
No 82
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.82 E-value=2.1e-19 Score=149.58 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=105.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||++++....... .+..|........+..+. . ...+.+|||||..++.. + +.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~~~~----~---~~ 67 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE-KYDPTIEDFYRKEIEVDS----S--PSVLEILDTAGTEQFAS----M---RD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCchhheEEEEEEECC----E--EEEEEEEECCCcccccc----h---HH
Confidence 479999999999999999999765322 122222111112222211 1 11578999999876532 2 22
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCcccc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTS 258 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~sa 258 (310)
.+++.+|++++|+|.++..++++...|...+..... ..+.|+++|+||+|+..... ....+.+.+ ...+.++||
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa 145 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESEREVSSAEGRALAEEW-GCPFMETSA 145 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcCccCHHHHHHHHHHh-CCEEEEecC
Confidence 345689999999999998888888888888776432 24789999999999864322 112222211 234556899
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|+.++|..++..+
T Consensus 146 ~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 146 KSKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999987543
No 83
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.82 E-value=1.2e-19 Score=151.58 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=105.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
+|+++|.+|||||||+++++.... ...++.++.......+..+. . ...+.+|||||+..... .....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~----~--~~~~~i~D~~g~~~~~~------~~~~~ 67 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDG----E--QVSLEILDTAGQQQADT------EQLER 67 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECC----E--EEEEEEEECCCCccccc------chHHH
Confidence 589999999999999999986542 23344443222222222111 1 11588999999874211 12234
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCccccC
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTSE 259 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~sa~ 259 (310)
+++.+|++++|+|+++..+++.+..|...+..+.....+.|+++|+||+|+.... +....+.+.+ ...+.++|++
T Consensus 68 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sa~ 146 (165)
T cd04146 68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASEL-GCLFFEVSAA 146 (165)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHc-CCEEEEeCCC
Confidence 5678999999999999988888888888877654212478999999999985431 1222333222 2345578999
Q ss_pred cc-CCHHHHHHHHhhc
Q 021615 260 TE-LSSEDAVKSLSTE 274 (310)
Q Consensus 260 ~~-~gi~~l~~~l~~~ 274 (310)
++ .|+.++|..++..
T Consensus 147 ~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 147 EDYDGVHSVFHELCRE 162 (165)
T ss_pred CCchhHHHHHHHHHHH
Confidence 99 5999999998754
No 84
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=6.5e-19 Score=146.98 Aligned_cols=157 Identities=22% Similarity=0.302 Sum_probs=108.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH---
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG--- 178 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~--- 178 (310)
.+|+++|.+|+|||||+|+|++..... .+.+++|.......+.... ..+.+|||||+.+..+....+.
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~iiDtpG~~~~~~~~~~~e~~~ 74 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--------KKYTLIDTAGIRRKGKVEEGIEKYS 74 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--------eeEEEEECCCCccccchhccHHHHH
Confidence 579999999999999999999886443 6677777765544444332 2689999999976543322221
Q ss_pred -HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-hHHHHHHHHHHh------
Q 021615 179 -RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK------ 250 (310)
Q Consensus 179 -~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~l~~~l~~------ 250 (310)
.....++..+|++++|+|++++.+..... +...+.. .+.|+++|+||+|+.... ...+...+.+..
T Consensus 75 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (174)
T cd01895 75 VLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLILE-----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLD 148 (174)
T ss_pred HHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh-----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhccccc
Confidence 12244567899999999999876655543 3333333 368999999999997652 223333333321
Q ss_pred -cCCCccccCccCCHHHHHHHHhh
Q 021615 251 -IGCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 251 -~g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
..+..+|++.+.|+.++++.+.+
T Consensus 149 ~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 149 YAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred CCceEEEeccCCCCHHHHHHHHHH
Confidence 24555899999999999998754
No 85
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4.3e-20 Score=153.64 Aligned_cols=159 Identities=18% Similarity=0.141 Sum_probs=114.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC--CC---CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI--AD---YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 176 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i--~~---~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~ 176 (310)
-.||+|+|..|||||||+-++...+... .+ ..|-|.. +..+.. ..+|.||||+|++++ .+
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tkt-----v~~~~~------~ikfeIWDTAGQERy----~s 69 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKT-----VTVDDN------TIKFEIWDTAGQERY----HS 69 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEE-----EEeCCc------EEEEEEEEcCCcccc----cc
Confidence 4689999999999999999998765221 11 1122221 111111 127899999999987 34
Q ss_pred HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CC
Q 021615 177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GC 253 (310)
Q Consensus 177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~ 253 (310)
+...+ ++.|+++|+|+|+++.+++...+.|.++|+...+ .+.-+.+|+||+|+....+ ..++......+. -+
T Consensus 70 lapMY---yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~--~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~ 144 (200)
T KOG0092|consen 70 LAPMY---YRGANAAIVVYDITDEESFEKAKNWVKELQRQAS--PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLF 144 (200)
T ss_pred cccce---ecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC--CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEE
Confidence 44454 4589999999999999999999999999997644 3455667999999987322 234444444444 45
Q ss_pred CccccCccCCHHHHHHHHhhccCCccc
Q 021615 254 DKVTSETELSSEDAVKSLSTEGGEADL 280 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~~~~~~~ 280 (310)
.++||+++.|++++|..++..+-....
T Consensus 145 ~ETSAKTg~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 145 FETSAKTGENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred EEEecccccCHHHHHHHHHHhccCccc
Confidence 669999999999999999887755443
No 86
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.82 E-value=2.3e-19 Score=148.99 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=98.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
||+++|.+|+|||||+++|...... . + .+|.......+.+.. ..+.+|||||+.++ ...+..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~-~-~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~-------~~~~~~ 62 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-T-T-IPTIGFNVETVTYKN--------LKFQVWDLGGQTSI-------RPYWRC 62 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-C-c-CCccCcCeEEEEECC--------EEEEEEECCCCHHH-------HHHHHH
Confidence 5899999999999999999765432 1 1 233333333333221 27899999998643 223455
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cCCCc
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 255 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g~~~ 255 (310)
++..+|++++|+|+++...+..... +...+... ...++|+++|+||+|+.+... ..++.+.+.. ..+.+
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~ 139 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE--ELKGAVLLVFANKQDMPGALS-EAEISEKLGLSELKDRTWSIFK 139 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch--hhcCCcEEEEEeCCCCCCCCC-HHHHHHHhCccccCCCcEEEEE
Confidence 6789999999999987655443322 22222221 124689999999999975421 2333333321 12667
Q ss_pred cccCccCCHHHHHHHHhh
Q 021615 256 VTSETELSSEDAVKSLST 273 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~ 273 (310)
+|++++.|+.++|+.|++
T Consensus 140 ~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 140 TSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred eeccCCCCHHHHHHHHhc
Confidence 999999999999999864
No 87
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.82 E-value=2.2e-19 Score=153.40 Aligned_cols=154 Identities=22% Similarity=0.210 Sum_probs=106.5
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|.+..... + .+|..+....+.... .++.+|||||+... ...
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~--~-~~t~~~~~~~~~~~~--------~~~~~~D~~G~~~~-------~~~ 77 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ--H-QPTQHPTSEELAIGN--------IKFTTFDLGGHQQA-------RRL 77 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc--c-CCccccceEEEEECC--------EEEEEEECCCCHHH-------HHH
Confidence 34789999999999999999999875322 1 234455555544322 27899999998543 224
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----------
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----------- 249 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~----------- 249 (310)
+..++..+|++++|+|++++..+.....++.++... ....+.|+++|+||+|+..... .+++.+.+.
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~-~~~i~~~l~l~~~~~~~~~~ 155 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSD-EELATVPFLILGNKIDAPYAAS-EDELRYALGLTNTTGSKGKV 155 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCCC-HHHHHHHcCCCccccccccc
Confidence 456678999999999999877666655444444321 1224789999999999875321 334444442
Q ss_pred ---hcCCCccccCccCCHHHHHHHHhhc
Q 021615 250 ---KIGCDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 250 ---~~g~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
...+..+|++++.|+.+.+++|...
T Consensus 156 ~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 156 GVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CCceeEEEEeecccCCChHHHHHHHHhh
Confidence 1124458999999999999998653
No 88
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.82 E-value=1.6e-19 Score=148.41 Aligned_cols=152 Identities=24% Similarity=0.199 Sum_probs=109.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc-hHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~-~l~~~ 180 (310)
.+|+++|++|+|||||+++|++.... +.+.+.+|.......+.... .++.+|||||+.+...... .....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~DtpG~~~~~~~~~~~~~~~ 73 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--------IPVRLIDTAGIRETEDEIEKIGIER 73 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--------EEEEEEECCCcCCCcchHHHHHHHH
Confidence 57999999999999999999988754 37788888766555554332 2789999999976532111 11123
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccCc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSET 260 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~ 260 (310)
....+.++|++++|+|++++.+..+...+.. ..++|+++|+||+|+.+.... ........+..+|+.+
T Consensus 74 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~~----~~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 74 AREAIEEADLVLFVIDASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLPDSEL----LSLLAGKPIIAISAKT 141 (157)
T ss_pred HHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCCcccc----ccccCCCceEEEECCC
Confidence 3456779999999999998777666554432 147999999999999865432 1111123456689999
Q ss_pred cCCHHHHHHHHhhc
Q 021615 261 ELSSEDAVKSLSTE 274 (310)
Q Consensus 261 ~~gi~~l~~~l~~~ 274 (310)
+.|+++++..+...
T Consensus 142 ~~~v~~l~~~l~~~ 155 (157)
T cd04164 142 GEGLDELKEALLEL 155 (157)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999987653
No 89
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.82 E-value=1.9e-19 Score=151.15 Aligned_cols=157 Identities=14% Similarity=0.108 Sum_probs=107.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|||||||+++++...... .+ .+|.......+.... ... ...+.+|||||+.+... +..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~-~~t~~~~~~~~~~~~--~~~--~~~l~i~Dt~G~~~~~~----~~~--- 67 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK-KY-VATLGVEVHPLDFHT--NRG--KIRFNVWDTAGQEKFGG----LRD--- 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CC-CCceeeEEEEEEEEE--CCE--EEEEEEEECCCChhhcc----ccH---
Confidence 479999999999999999998654221 11 122222222221110 011 12689999999876532 222
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hcCCCccccCc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVTSET 260 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~g~~~~sa~~ 260 (310)
.++..+|++++|+|+++..+++.+..|..++..+.. +.|+++|+||+|+.......+ ..+... ...+.++||++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~e~Sa~~ 143 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRKVKAK-QITFHRKKNLQYYEISAKS 143 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccccCCHH-HHHHHHHcCCEEEEEeCCC
Confidence 235689999999999999999888889888887643 799999999999974321111 112222 34567799999
Q ss_pred cCCHHHHHHHHhhccC
Q 021615 261 ELSSEDAVKSLSTEGG 276 (310)
Q Consensus 261 ~~gi~~l~~~l~~~~~ 276 (310)
+.|++++|..|+..+.
T Consensus 144 ~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 144 NYNFEKPFLWLARKLL 159 (166)
T ss_pred CCChHHHHHHHHHHHH
Confidence 9999999999986653
No 90
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.82 E-value=2.4e-19 Score=151.77 Aligned_cols=166 Identities=16% Similarity=0.046 Sum_probs=107.8
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCC----CccCCCceEEEeCCCCCccccCCchH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG----AEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~----~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
..||+++|.+|||||||++++.+........+..+.+.....+......+ .......+.+|||||+.+..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------ 77 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFR------ 77 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHH------
Confidence 46899999999999999999998753221111111111111122111000 00111268999999985541
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCC
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCD 254 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~ 254 (310)
.....+++.+|++++|+|+++..++.++..|..++..+.. ..+.|+++|+||+|+.+... ..++..+..... .+.
T Consensus 78 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 78 -SLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred -HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence 2233456789999999999999999999888888876432 12578999999999965321 112222222333 456
Q ss_pred ccccCccCCHHHHHHHHhhcc
Q 021615 255 KVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~ 275 (310)
++||+++.|++++|..+....
T Consensus 156 e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 156 ETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 799999999999999987543
No 91
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.82 E-value=2.2e-19 Score=152.41 Aligned_cols=155 Identities=20% Similarity=0.200 Sum_probs=107.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccc-eEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL-GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~-~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.||+++|.+++|||||+.++....... .+. +|..... ..+..+ +.. -++.+|||+|..++... .
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~-~~~-~Ti~~~~~~~~~~~----~~~--v~l~i~Dt~G~~~~~~~----~--- 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYI-PTVFDNFSANVSVD----GNT--VNLGLWDTAGQEDYNRL----R--- 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCC-CcceeeeEEEEEEC----CEE--EEEEEEECCCCcccccc----c---
Confidence 579999999999999999999765322 222 2221111 112211 112 27899999999776332 1
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-----------hHHHHHHHHHH
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-----------DRLQSLTEEIL 249 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-----------~~~~~l~~~l~ 249 (310)
..+++.+|++++|+|.++..+++.+ ..|..++..+. .+.|+++|+||+|+.+.. ...++..+...
T Consensus 67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~ 143 (176)
T cd04133 67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK 143 (176)
T ss_pred hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH
Confidence 2356789999999999999999987 67888887764 368999999999996431 11222222223
Q ss_pred hc---CCCccccCccCCHHHHHHHHhhcc
Q 021615 250 KI---GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 250 ~~---g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.. .+.++||+++.|++++|..++...
T Consensus 144 ~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 144 QIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 33 366799999999999999987654
No 92
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.82 E-value=5.4e-19 Score=144.94 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=107.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||+++|++........+.++.......+.... . ...+.+||+||+... .....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~l~D~~g~~~~-------~~~~~ 67 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG----K--TVKLQIWDTAGQERF-------RSITP 67 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC----E--EEEEEEEecCChHHH-------HHHHH
Confidence 3699999999999999999998875544333333322222232211 0 126899999998543 12334
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC-CcHhHHHHHHHHHHh--cCCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP-EARDRLQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~-~~~~~~~~l~~~l~~--~g~~~~sa~ 259 (310)
..++.+|++++|+|++++.+++....|...+..+.. ...|+++++||+|+. ......+.+.+.... ..+..+|++
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 145 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAK 145 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecC
Confidence 456789999999999988778888888877776532 368999999999996 222223344444433 456668999
Q ss_pred ccCCHHHHHHHHh
Q 021615 260 TELSSEDAVKSLS 272 (310)
Q Consensus 260 ~~~gi~~l~~~l~ 272 (310)
++.|+.+++..++
T Consensus 146 ~~~~i~~~~~~i~ 158 (159)
T cd00154 146 TGENVEELFQSLA 158 (159)
T ss_pred CCCCHHHHHHHHh
Confidence 9999999999875
No 93
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.82 E-value=2e-19 Score=172.76 Aligned_cols=159 Identities=26% Similarity=0.365 Sum_probs=112.8
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 176 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~ 176 (310)
.++...+|+++|.||||||||+|+|++.... ++++|+||.+.....+..+.. .+.+|||||+.+....-+.
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--------~v~l~DTaG~~~~~~~ie~ 270 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--------LIKLLDTAGIREHADFVER 270 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--------EEEEeeCCCcccchhHHHH
Confidence 4567789999999999999999999998654 588999999877777665432 6899999999764321111
Q ss_pred HH-HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCc
Q 021615 177 LG-RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDK 255 (310)
Q Consensus 177 l~-~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~ 255 (310)
.+ .....+++.+|++++|+|++++.+.++. |...+.. .++|+++|+||+|+... + .+.+.+.+ ...+..
T Consensus 271 ~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-----~~~piIlV~NK~Dl~~~-~-~~~~~~~~-~~~~~~ 340 (442)
T TIGR00450 271 LGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK-----SKKPFILVLNKIDLKIN-S-LEFFVSSK-VLNSSN 340 (442)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh-----CCCCEEEEEECccCCCc-c-hhhhhhhc-CCceEE
Confidence 11 1234667899999999999987766654 4445432 36899999999999754 1 22222111 123456
Q ss_pred cccCccCCHHHHHHHHhhcc
Q 021615 256 VTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~ 275 (310)
+|+++ .|+.+.++.|....
T Consensus 341 vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred EEEec-CCHHHHHHHHHHHH
Confidence 89997 58888888776644
No 94
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.82 E-value=1.7e-19 Score=158.30 Aligned_cols=154 Identities=21% Similarity=0.171 Sum_probs=105.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|||||||++++...+... + .+|........... .+ .+.+|||||+..+. .+. .
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~-~~Tig~~~~~~~~~------~~--~l~iwDt~G~e~~~----~l~---~ 62 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--T-VSTVGGAFYLKQWG------PY--NISIWDTAGREQFH----GLG---S 62 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--C-CCccceEEEEEEee------EE--EEEEEeCCCcccch----hhH---H
Confidence 379999999999999999999876321 1 22322221111111 11 68999999987652 222 2
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC-------------------cH----h
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE-------------------AR----D 239 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~-------------------~~----~ 239 (310)
.+++.+|++++|+|+++..+++.+..|+..+..... .+.|+++|+||+|+.. .. +
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~--~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~ 140 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTAN--EDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLE 140 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccccccccccccccccccccCCHH
Confidence 346789999999999999999988877777665422 4689999999999865 11 1
Q ss_pred HHHHHHHHHHh-------------cCCCccccCccCCHHHHHHHHhhccC
Q 021615 240 RLQSLTEEILK-------------IGCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 240 ~~~~l~~~l~~-------------~g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
....+.+.+.. ..+.++||++|.|+.++|..++....
T Consensus 141 e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 141 DAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22233322221 23667999999999999999876553
No 95
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.82 E-value=5e-19 Score=146.42 Aligned_cols=157 Identities=19% Similarity=0.145 Sum_probs=107.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|++|+|||||+++|++........+.++.......+.... . ...+.+|||||..... .+..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~D~~g~~~~~----~~~~--- 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGG----K--RIDLAIWDTAGQERYH----ALGP--- 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECC----E--EEEEEEEECCchHHHH----HhhH---
Confidence 4799999999999999999998764332222222222222222111 1 1268999999975442 1222
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~sa~ 259 (310)
..+..+|++++|+|+++..+++....|..++..+.. .+.|+++|+||+|+..... ..+.+.+.....+ +.++|++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 145 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG--NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAK 145 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 234689999999999998888888888888877654 2689999999999975322 1223333333333 4568999
Q ss_pred ccCCHHHHHHHHhhc
Q 021615 260 TELSSEDAVKSLSTE 274 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~ 274 (310)
++.|+.++++.+...
T Consensus 146 ~~~gi~~~~~~l~~~ 160 (162)
T cd04123 146 TGKGIEELFLSLAKR 160 (162)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998654
No 96
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.81 E-value=3.6e-19 Score=147.43 Aligned_cols=150 Identities=18% Similarity=0.197 Sum_probs=102.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
||+++|.+|||||||++++++..... ..+|.......+.+.. ..+.+|||||+... ...+..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~---~~~t~~~~~~~~~~~~--------~~~~i~D~~G~~~~-------~~~~~~ 62 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT---TIPTIGFNVETVEYKN--------VSFTVWDVGGQDKI-------RPLWKH 62 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC---CCCCcCcceEEEEECC--------EEEEEEECCCChhh-------HHHHHH
Confidence 68999999999999999999886321 1222222233333321 27899999998654 223344
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cCCCcc
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDKV 256 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g~~~~ 256 (310)
.+..+|++++|+|++++..+.....++..+..... ..+.|+++|+||+|+..... .+++.+.+.. ..+.++
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 140 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGALS-VSELIEKLGLEKILGRRWHIQPC 140 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccccC-HHHHHHhhChhhccCCcEEEEEe
Confidence 56789999999999988777766555555443221 34789999999999986431 2333333321 235569
Q ss_pred ccCccCCHHHHHHHHhh
Q 021615 257 TSETELSSEDAVKSLST 273 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~ 273 (310)
|++++.|++++|+.|..
T Consensus 141 Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 141 SAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred eCCCCCCHHHHHHHHhh
Confidence 99999999999998754
No 97
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.81 E-value=9.7e-19 Score=145.98 Aligned_cols=155 Identities=22% Similarity=0.210 Sum_probs=104.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
+.|+++|.+|+|||||+|+|++........+++|.......+.... . ....+.+|||||+.+. .....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~--~~~~~~iiDtpG~~~~-------~~~~~ 68 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV---L--KIPGITFIDTPGHEAF-------TNMRA 68 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc---C--CcceEEEEeCCCcHHH-------HHHHH
Confidence 4699999999999999999998876555556667665555554321 0 0127899999998543 12223
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-hHH-HHHHHHHH--------hcC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRL-QSLTEEIL--------KIG 252 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~-~~l~~~l~--------~~g 252 (310)
..+..+|++++|+|+++....+....+ ..+.. .++|+++|+||+|+.... +.. ..+..... ...
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~-~~~~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAI-KLAKA-----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQ 142 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHH-HHHHH-----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCc
Confidence 456789999999999886544443333 33443 368999999999987532 111 12211110 123
Q ss_pred CCccccCccCCHHHHHHHHhhcc
Q 021615 253 CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+.++|+.++.|+.++++.+....
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 143 IVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred EEEeecccCCCHHHHHHHHHHhh
Confidence 55689999999999999986654
No 98
>PRK04213 GTP-binding protein; Provisional
Probab=99.81 E-value=8.9e-19 Score=151.32 Aligned_cols=158 Identities=23% Similarity=0.258 Sum_probs=103.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC----chH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----KGL 177 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~----~~l 177 (310)
.++|+++|.+|||||||+|+|++.....+..|++|..+....+. .+.+|||||+....... ..+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~------------~~~l~Dt~G~~~~~~~~~~~~~~~ 76 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG------------DFILTDLPGFGFMSGVPKEVQEKI 76 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec------------ceEEEeCCccccccccCHHHHHHH
Confidence 46899999999999999999999876667788888765432221 58999999974322111 111
Q ss_pred HHH---HHH-HhhhcCEEEEecccCCCCcH----------HHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-hHHH
Q 021615 178 GRN---FLR-HLRRTRLLVHVIDAAAENPV----------NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQ 242 (310)
Q Consensus 178 ~~~---~~~-~l~~~d~il~VvD~s~~~~~----------~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~ 242 (310)
... ++. .+..++++++|+|.++.... .....+...+.. .++|+++|+||+|+.... +..+
T Consensus 77 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~ 151 (201)
T PRK04213 77 KDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNRDEVLD 151 (201)
T ss_pred HHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcHHHHHH
Confidence 111 222 34567899999998653211 011223333333 368999999999997543 2344
Q ss_pred HHHHHHHhc--------CCCccccCccCCHHHHHHHHhhccCC
Q 021615 243 SLTEEILKI--------GCDKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 243 ~l~~~l~~~--------g~~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
++.+.+... .+..+||+++ |+++++..+.....+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 152 EIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 444444310 2456899999 999999999876543
No 99
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.81 E-value=2.9e-19 Score=156.95 Aligned_cols=157 Identities=13% Similarity=0.073 Sum_probs=108.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
..||+++|.+|||||||+++++..+... .+..+.+... ..+... ... ..+.+|||||..++. .+
T Consensus 13 ~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~--~~~~~~----~~~--~~l~i~Dt~G~~~~~----~~-- 78 (219)
T PLN03071 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTN----CGK--IRFYCWDTAGQEKFG----GL-- 78 (219)
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEE--EEEEEC----CeE--EEEEEEECCCchhhh----hh--
Confidence 3689999999999999999988665322 1111112111 111111 011 278999999987652 12
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hcCCCccc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIGCDKVT 257 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~g~~~~s 257 (310)
+..+++.+|++|+|+|.++..+++.+..|..++..+. .+.|+++|+||+|+.......+.+ .... .+.+.++|
T Consensus 79 -~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~S 153 (219)
T PLN03071 79 -RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEIS 153 (219)
T ss_pred -hHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcC
Confidence 2234678999999999999999999988988887654 368999999999986432111222 2222 33456799
Q ss_pred cCccCCHHHHHHHHhhccCC
Q 021615 258 SETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~~~ 277 (310)
|+++.|+.++|..++....+
T Consensus 154 Ak~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 154 AKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred CCCCCCHHHHHHHHHHHHHc
Confidence 99999999999999876643
No 100
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.81 E-value=5.4e-19 Score=149.03 Aligned_cols=159 Identities=16% Similarity=0.053 Sum_probs=105.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCce-eeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT-~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.||+++|.+|||||||++++.+.... ..|..|. .......+.... . ...+.+|||||+.++.. ..
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~----~--~~~l~i~Dt~G~~~~~~-------~~ 66 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFD-KNYKATIGVDFEMERFEILG----V--PFSLQLWDTAGQERFKC-------IA 66 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECC----E--EEEEEEEeCCChHHHHh-------hH
Confidence 37999999999999999999987532 2221121 121112222211 1 12689999999865421 23
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHHHHHhc--CCCcc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEILKI--GCDKV 256 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~~l~~~--g~~~~ 256 (310)
..+++.+|++++|+|+++..+++....|..++...... ...|+++|+||+|+.+..+. .+........+ .+.++
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~ 145 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSV 145 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEE
Confidence 35567999999999999888888888888877543211 24678999999998653221 11122222333 34579
Q ss_pred ccCccCCHHHHHHHHhhccC
Q 021615 257 TSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~~ 276 (310)
||+++.|++++|..+++.+.
T Consensus 146 Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 146 SALSGENVREFFFRVAALTF 165 (170)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999877653
No 101
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.81 E-value=2.4e-19 Score=154.96 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=108.6
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceee--ccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLM--PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~--~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
..+|+++|++|||||||+++|.+...... + .+|.. .....+.... . ...+.+|||||+.... .
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~-~-~~t~~~~~~~~~~~~~~----~--~~~l~l~D~~G~~~~~-------~ 70 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGS-Y-ITTIGVDFKIRTVEING----E--RVKLQIWDTAGQERFR-------T 70 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC-c-CccccceeEEEEEEECC----E--EEEEEEEeCCCchhHH-------H
Confidence 57899999999999999999998753211 1 12221 1111222111 1 1268899999985542 2
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~ 256 (310)
....++..++++++|+|++++.+++.+..|.+.+.... ...|+++|+||+|+...... .++..+.... ..+.++
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 147 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFET 147 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 33456678999999999999888888888888887643 36899999999999754221 1222222233 345679
Q ss_pred ccCccCCHHHHHHHHhhccCC
Q 021615 257 TSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~~~ 277 (310)
|++++.|+.++|..+......
T Consensus 148 Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 148 SAKENINVEEMFNCITELVLR 168 (199)
T ss_pred ECCCCcCHHHHHHHHHHHHHH
Confidence 999999999999998776543
No 102
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.81 E-value=4.7e-19 Score=148.44 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=104.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|++|||||||++++++........+..+.+.....+.... .. ..+.+|||||+.... ....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~~~D~~g~~~~~-------~~~~ 67 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD----KL--VTLQIWDTAGQERFQ-------SLGV 67 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC----EE--EEEEEEeCCChHHHH-------hHHH
Confidence 3799999999999999999998763321111111111111222111 11 267899999985442 1233
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh---cCCCcc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARD-RLQSLTEEILK---IGCDKV 256 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~---~g~~~~ 256 (310)
.+++.||++++|+|++++.+++....|.+++..... ...+.|+++|+||+|+..... ..+........ ..+.++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFET 147 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEE
Confidence 456789999999999988777777777665543221 123689999999999973211 12333333333 346668
Q ss_pred ccCccCCHHHHHHHHhhccC
Q 021615 257 TSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~~ 276 (310)
|+.++.|++++++.++..+.
T Consensus 148 Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 148 SAKEAINVEQAFETIARKAL 167 (172)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999876553
No 103
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.81 E-value=3.8e-19 Score=150.65 Aligned_cols=154 Identities=19% Similarity=0.182 Sum_probs=102.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||++++..... .. + .+|.......+.... ..+.+|||||+.+. ...+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~-~~-~-~~t~~~~~~~~~~~~--------~~l~l~D~~G~~~~-------~~~~ 74 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES-VT-T-IPTIGFNVETVTYKN--------ISFTVWDVGGQDKI-------RPLW 74 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC-CC-c-CCccccceEEEEECC--------EEEEEEECCCChhh-------HHHH
Confidence 46899999999999999999975432 11 1 123222222232211 27899999998654 2233
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cCCC
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCD 254 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g~~ 254 (310)
..+++.||++++|+|++++.+++....++..+... ....+.|+++|+||+|+.+... .+++.+.+.. ..+.
T Consensus 75 ~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~ 152 (175)
T smart00177 75 RHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNE-DELRDAVILVFANKQDLPDAMK-AAEITEKLGLHSIRDRNWYIQ 152 (175)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhC-HhhcCCcEEEEEeCcCcccCCC-HHHHHHHhCccccCCCcEEEE
Confidence 44578999999999999887777766555555321 1123689999999999975422 2333333321 1233
Q ss_pred ccccCccCCHHHHHHHHhhcc
Q 021615 255 KVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~ 275 (310)
++||++|.|+.++|++|+..+
T Consensus 153 ~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 153 PTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999987653
No 104
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=3.8e-19 Score=155.26 Aligned_cols=159 Identities=19% Similarity=0.148 Sum_probs=108.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|||||||+++|++........+..+.+.....+.... ... ..+.+|||||+.... ....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~---~~~--~~l~i~Dt~G~~~~~-------~~~~ 70 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEP---GVR--IKLQLWDTAGQERFR-------SITR 70 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECC---CCE--EEEEEEeCCcchhHH-------HHHH
Confidence 6899999999999999999998764332222211121112222111 111 268999999986542 1223
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcccc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 258 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~sa 258 (310)
.+++.+|++++|+|++++.+++.+..|..++..+.. ....|+++|+||+|+.... +....+.+.+. ..+.++|+
T Consensus 71 ~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa 148 (211)
T cd04111 71 SYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSA 148 (211)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeC
Confidence 456789999999999999899998888888765432 1346789999999997532 22333333322 45677999
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|+.++|..++...
T Consensus 149 k~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 149 RTGDNVEEAFELLTQEI 165 (211)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999988754
No 105
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=4e-19 Score=156.97 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=106.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..||+++|.+|||||||++++++.... ..+..|........+..+ +.. ..+.||||+|..++. .+.
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~-~~y~pTi~~~~~~~i~~~----~~~--v~l~iwDTaG~e~~~----~~~--- 78 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTAGLETE----EQR--VELSLWDTSGSPYYD----NVR--- 78 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCC-CCcCCceeeeeEEEEEEC----CEE--EEEEEEeCCCchhhH----HHH---
Confidence 368999999999999999999976422 222222111111112211 112 278999999986542 122
Q ss_pred HHHhhhcCEEEEecccCCCCcHHH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc------------H-hHHHHHHHH
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------------R-DRLQSLTEE 247 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~-~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------------~-~~~~~l~~~ 247 (310)
..+++.||++++|+|+++..+++. ...|..++..+.+ +.|+++|+||+|+... . -..++..+.
T Consensus 79 ~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~ 155 (232)
T cd04174 79 PLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAL 155 (232)
T ss_pred HHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHH
Confidence 235679999999999999999987 4788888887643 6799999999998631 0 112233333
Q ss_pred HHhcC---CCccccCccC-CHHHHHHHHhhcc
Q 021615 248 ILKIG---CDKVTSETEL-SSEDAVKSLSTEG 275 (310)
Q Consensus 248 l~~~g---~~~~sa~~~~-gi~~l~~~l~~~~ 275 (310)
....+ +.++||+++. |++++|..++...
T Consensus 156 a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 156 AKQLGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred HHHcCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 34444 4579999998 8999999987654
No 106
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=2.4e-19 Score=151.05 Aligned_cols=159 Identities=18% Similarity=0.096 Sum_probs=105.6
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeec-cceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP-NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~-~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
|..++|+++|.+|||||||++++++....+..+..|+... ....+..+. . ...+.+||++|..+...
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~----~--~~~l~~~d~~g~~~~~~------ 69 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYG----Q--EKYLILREVGEDEVAIL------ 69 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECC----e--EEEEEEEecCCcccccc------
Confidence 4567899999999999999999998764423343333211 112222221 1 12688999999876522
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCC
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCD 254 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~ 254 (310)
....+++.||++++|+|++++.+++.+..|.+.+.. ..+.|+++|+||+|+.+... ..+++.+.+....+.
T Consensus 70 -~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 144 (169)
T cd01892 70 -LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM----LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPL 144 (169)
T ss_pred -cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc----CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCE
Confidence 122345799999999999987777666666555432 13689999999999965422 123333322211235
Q ss_pred ccccCccCCHHHHHHHHhhcc
Q 021615 255 KVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~ 275 (310)
++||+++.|+.++|..++..+
T Consensus 145 ~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 145 HFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred EEEeccCccHHHHHHHHHHHh
Confidence 699999999999999987654
No 107
>PLN03110 Rab GTPase; Provisional
Probab=99.81 E-value=3.3e-19 Score=156.23 Aligned_cols=159 Identities=18% Similarity=0.105 Sum_probs=111.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...||+++|.+|||||||+++|++........+....+.....+..+. .. ..+.+|||||+.+. ...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~----~~--~~l~l~Dt~G~~~~-------~~~ 77 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG----KT--VKAQIWDTAGQERY-------RAI 77 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC----EE--EEEEEEECCCcHHH-------HHH
Confidence 456899999999999999999998764332222222222222232221 11 27899999998654 223
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCcc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKV 256 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~ 256 (310)
+..+++.++++++|+|+++..+++.+..|+..+..+.. .+.|+++|+||+|+..... ....+... ..+.+.++
T Consensus 78 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~-~~~~~~e~ 154 (216)
T PLN03110 78 TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNHLRSVAEEDGQALAEK-EGLSFLET 154 (216)
T ss_pred HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcccccCCCHHHHHHHHHH-cCCEEEEE
Confidence 34456789999999999999999998888888876543 4689999999999864322 22222221 23456779
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||+++.|+.++|..++...
T Consensus 155 SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 155 SALEATNVEKAFQTILLEI 173 (216)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987644
No 108
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.81 E-value=6.2e-19 Score=146.55 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=105.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.||+++|++|||||||+++|++.+... .+..+.+... ..+..+. . ...+.+|||||..+.. ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~v~~~~----~--~~~~~i~D~~G~~~~~-------~~ 66 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLT--QTVNLDD----T--TVKFEIWDTAGQERYR-------SL 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEE--EEEEECC----E--EEEEEEEeCCchHHHH-------HH
Confidence 579999999999999999999886433 2222211111 1222111 1 1268999999975431 12
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~s 257 (310)
...+++.+|++++|+|++++.+++....|...+..... ...|+++++||+|+..... ..+...+.... ..+.++|
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETS 144 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEE
Confidence 22345689999999999998888888888887776432 4689999999999874211 12223333333 3466699
Q ss_pred cCccCCHHHHHHHHhhc
Q 021615 258 SETELSSEDAVKSLSTE 274 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~ 274 (310)
++++.|+.+++..++..
T Consensus 145 a~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 145 AKTGENVNELFTEIAKK 161 (163)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999998764
No 109
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=3.2e-19 Score=151.70 Aligned_cols=155 Identities=14% Similarity=0.134 Sum_probs=105.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|||||||++++.+.... ..+..|........+..+ +.. -.+.+|||||...+... ..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~----~~~--~~l~iwDt~G~~~~~~~-------~~ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP-ETYVPTVFENYTASFEID----EQR--IELSLWDTSGSPYYDNV-------RP 67 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-CCcCCceEEEEEEEEEEC----CEE--EEEEEEECCCchhhhhc-------ch
Confidence 47999999999999999999977532 222222211111112211 112 27899999998655321 12
Q ss_pred HHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc----------------HhHHHHHH
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEA----------------RDRLQSLT 245 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~----------------~~~~~~l~ 245 (310)
.+++.||++++|+|.+++.+++.+ ..|..++..+.+ +.|+++|+||+|+.+. .+..+++.
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 346789999999999999999985 788888887653 6899999999998541 11223333
Q ss_pred HHHHhcCCCccccCccCC-HHHHHHHHhhc
Q 021615 246 EEILKIGCDKVTSETELS-SEDAVKSLSTE 274 (310)
Q Consensus 246 ~~l~~~g~~~~sa~~~~g-i~~l~~~l~~~ 274 (310)
+.+....+.++||+++.+ ++++|..+...
T Consensus 145 ~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 145 KQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 322222356799999995 99999987663
No 110
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.81 E-value=3.8e-19 Score=149.45 Aligned_cols=150 Identities=23% Similarity=0.228 Sum_probs=102.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
+|+++|++|||||||+++|++.... . ..+|.......+.... ..+.+|||||..+. ...+..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~--~-~~~t~g~~~~~~~~~~--------~~~~i~D~~G~~~~-------~~~~~~ 62 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPK--K-VAPTVGFTPTKLRLDK--------YEVCIFDLGGGANF-------RGIWVN 62 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCc--c-ccCcccceEEEEEECC--------EEEEEEECCCcHHH-------HHHHHH
Confidence 4899999999999999999976321 1 1223322222333221 27899999997543 334566
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHH-----HH-----hcCC
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE-----IL-----KIGC 253 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~-----l~-----~~g~ 253 (310)
+++.||+++||+|+++..+++....++..+.... ...++|+++|+||+|+...... .++.+. +. ...+
T Consensus 63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~~~~-~~i~~~~~l~~~~~~~~~~~~~ 140 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKNALLG-ADVIEYLSLEKLVNENKSLCHI 140 (167)
T ss_pred HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcCCCCH-HHHHHhcCcccccCCCCceEEE
Confidence 7889999999999999877777777777665432 2247899999999999765321 122221 11 1234
Q ss_pred CccccCcc------CCHHHHHHHHhh
Q 021615 254 DKVTSETE------LSSEDAVKSLST 273 (310)
Q Consensus 254 ~~~sa~~~------~gi~~l~~~l~~ 273 (310)
..+||++| .|+.+.|++|++
T Consensus 141 ~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 141 EPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEeEceeCCCCccccCHHHHHHHHhc
Confidence 44899998 899999999864
No 111
>PTZ00369 Ras-like protein; Provisional
Probab=99.81 E-value=2.3e-19 Score=153.82 Aligned_cols=159 Identities=18% Similarity=0.118 Sum_probs=107.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
+||+++|.+|||||||++++.+..... .+..|+.......+..+. .. ..+.+|||||+.++.. + +.
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~----l---~~ 71 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFID-EYDPTIEDSYRKQCVIDE----ET--CLLDILDTAGQEEYSA----M---RD 71 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCc-CcCCchhhEEEEEEEECC----EE--EEEEEEeCCCCccchh----h---HH
Confidence 689999999999999999999865321 121111111111111111 11 1678999999876532 2 23
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~ 259 (310)
.+++.+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+..... ........... ..+.++||+
T Consensus 72 ~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak 150 (189)
T PTZ00369 72 QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAK 150 (189)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCC
Confidence 456689999999999999888888888888876532 23689999999999864321 11112222223 345679999
Q ss_pred ccCCHHHHHHHHhhccC
Q 021615 260 TELSSEDAVKSLSTEGG 276 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~~ 276 (310)
++.|+.++|..++....
T Consensus 151 ~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 151 QRVNVDEAFYELVREIR 167 (189)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987653
No 112
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.81 E-value=2.4e-19 Score=151.45 Aligned_cols=157 Identities=16% Similarity=0.124 Sum_probs=106.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeec-cceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP-NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~-~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.+|+++|.+|||||||++++.+.+... .+. .|... ....+..+ +.. ..+.+|||||..++. .+ +
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~-~~~-~t~~~~~~~~~~~~----~~~--~~l~i~Dt~G~~~~~----~l---~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD-YHD-PTIEDAYKQQARID----NEP--ALLDILDTAGQAEFT----AM---R 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC-CcC-CcccceEEEEEEEC----CEE--EEEEEEeCCCchhhH----HH---h
Confidence 579999999999999999999765321 111 12211 11112211 111 268999999986652 22 2
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVT 257 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~s 257 (310)
..++..+|++++|+|+++..+++....|...+..... ..+.|+++|+||+|+.... +....+.+.. .+.+.++|
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~-~~~~~e~S 145 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF-NCPFFETS 145 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh-CCEEEEEe
Confidence 3446689999999999999999988877777765432 1368999999999986432 1222332222 34566799
Q ss_pred cCccCCHHHHHHHHhhccC
Q 021615 258 SETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~~ 276 (310)
|+++.|++++|..++....
T Consensus 146 a~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 146 AALRHYIDDAFHGLVREIR 164 (172)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 9999999999999976553
No 113
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.81 E-value=4.7e-19 Score=149.04 Aligned_cols=160 Identities=18% Similarity=0.100 Sum_probs=107.8
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|++|+|||||+++++.........+..+.+.....+.... .. ..+.+|||||..+... ..+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~------~~~ 69 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG----ER--IKVQLWDTAGQERFRK------SMV 69 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC----eE--EEEEEEeCCChHHHHH------hhH
Confidence 36899999999999999999987653221111111111112222111 11 2689999999864321 112
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVT 257 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~s 257 (310)
..+++.+|++++|+|++++.+++....|..++..+... .+.|+++|+||+|+....+ ....+.+.. .+.+.++|
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~S 147 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQIQVPTDLAQRFADAH-SMPLFETS 147 (170)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccchhhcCCCHHHHHHHHHHc-CCcEEEEe
Confidence 33457899999999999999999998898888765422 3689999999999865432 222232222 35577799
Q ss_pred cCc---cCCHHHHHHHHhhcc
Q 021615 258 SET---ELSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~~---~~gi~~l~~~l~~~~ 275 (310)
|++ +.++.++|..|+...
T Consensus 148 a~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 148 AKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred ccCCcCCCCHHHHHHHHHHHh
Confidence 999 999999999987543
No 114
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=4.4e-19 Score=151.70 Aligned_cols=159 Identities=15% Similarity=0.037 Sum_probs=107.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
++|+++|.+|||||||+++|++........+..+.+.....+..+. .. ..+.+|||||..+.. ..+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~i~Dt~g~~~~~-------~~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIEN----KI--IKLQIWDTNGQERFR-------SLNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC----EE--EEEEEEECCCcHHHH-------hhHH
Confidence 4799999999999999999998764321111111111111222111 11 268899999975442 1334
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~sa~ 259 (310)
..++.+|++++|+|++++.++..+..|..++..+.. ...|+++|+||+|+.+.... .+........ +.+.++|++
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 145 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAR--ENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAK 145 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCC
Confidence 556789999999999999999988888888887643 34799999999998743211 1111222222 346679999
Q ss_pred ccCCHHHHHHHHhhccC
Q 021615 260 TELSSEDAVKSLSTEGG 276 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~~ 276 (310)
++.|+.++|..|+....
T Consensus 146 ~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 146 QSINVEEAFILLVKLII 162 (188)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999877653
No 115
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.81 E-value=1.6e-18 Score=146.58 Aligned_cols=156 Identities=21% Similarity=0.216 Sum_probs=100.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCC---------------CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 167 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~---------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~ 167 (310)
.+|+++|.+|+|||||+++|++....+.. ..++|..+....+.+... +.. ...+.+|||||+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~-~~~--~~~~~l~Dt~G~ 77 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK-DGQ--EYLLNLIDTPGH 77 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC-CCC--cEEEEEEECCCC
Confidence 36999999999999999999975422211 112333332222221100 111 126889999999
Q ss_pred CccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHHHH
Q 021615 168 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLT 245 (310)
Q Consensus 168 ~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~l~ 245 (310)
.++ ...+..++..+|++++|+|+++....++...+.... . .++|+++|+||+|+.+.. ...+++.
T Consensus 78 ~~~-------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~ 144 (179)
T cd01890 78 VDF-------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E-----NNLEIIPVINKIDLPSADPERVKQQIE 144 (179)
T ss_pred hhh-------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H-----cCCCEEEEEECCCCCcCCHHHHHHHHH
Confidence 764 223445677899999999999876666655554322 2 368999999999986432 1123333
Q ss_pred HHHHhcC---CCccccCccCCHHHHHHHHhhcc
Q 021615 246 EEILKIG---CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 246 ~~l~~~g---~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+.+. +. +..+|++++.|++++++.++...
T Consensus 145 ~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 145 DVLG-LDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHhC-CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 3221 22 44699999999999999987653
No 116
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.81 E-value=3.5e-19 Score=152.70 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=105.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|||||||++++++..... .+..|........+..+ .. ...+.+|||||..++.. +..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~i~~~----~~--~~~l~i~Dt~G~~~~~~----l~~--- 66 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ-VYEPTVFENYVHDIFVD----GL--HIELSLWDTAGQEEFDR----LRS--- 66 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-ccCCcceeeeEEEEEEC----CE--EEEEEEEECCCChhccc----ccc---
Confidence 479999999999999999999875322 11111111111111111 11 12689999999876532 111
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------------HHHHHHH
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEI 248 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~l~~~l 248 (310)
.++..+|++++|+|+++..+++... .|..++..+. .+.|+++|+||+|+....+.. ++..+..
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA 143 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 2356899999999999998888775 4777776543 368999999999997643211 1112222
Q ss_pred Hh---cCCCccccCccCCHHHHHHHHhhccCC
Q 021615 249 LK---IGCDKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 249 ~~---~g~~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
.. ..+.++||+++.|++++|..++..+..
T Consensus 144 ~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 144 KRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 22 346679999999999999999876643
No 117
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=8.2e-19 Score=178.26 Aligned_cols=162 Identities=22% Similarity=0.251 Sum_probs=115.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH-
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG- 178 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~- 178 (310)
..++|+++|.||||||||+|+|++.+.. ++++++||.++....+..+.. .+.+|||||+.+......+..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--------~~~liDTaG~~~~~~~~~~~e~ 520 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--------DWLFIDTAGIKRRQHKLTGAEY 520 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--------EEEEEECCCcccCcccchhHHH
Confidence 3479999999999999999999998864 488999999887666654432 688999999875432211111
Q ss_pred -H--HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH----hc
Q 021615 179 -R--NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----KI 251 (310)
Q Consensus 179 -~--~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~----~~ 251 (310)
. ....+++.||++++|+|+++..+.++...+ ..+.. .++|+++|+||+|+.+... .+.+.+.+. ..
T Consensus 521 ~~~~r~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~-----~~~piIiV~NK~DL~~~~~-~~~~~~~~~~~l~~~ 593 (712)
T PRK09518 521 YSSLRTQAAIERSELALFLFDASQPISEQDLKVM-SMAVD-----AGRALVLVFNKWDLMDEFR-RQRLERLWKTEFDRV 593 (712)
T ss_pred HHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCEEEEEEchhcCChhH-HHHHHHHHHHhccCC
Confidence 0 113456889999999999998877776543 44443 3789999999999976432 233333332 22
Q ss_pred C---CCccccCccCCHHHHHHHHhhccCC
Q 021615 252 G---CDKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 252 g---~~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
. +..+||+++.|+.+++..+......
T Consensus 594 ~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 594 TWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2 2458999999999999998776543
No 118
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=8.9e-19 Score=146.77 Aligned_cols=154 Identities=18% Similarity=0.257 Sum_probs=103.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
||+++|.+|||||||+++|.+.... ..++.+ ........... ... ..+.+|||||..+.. ..+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~-~~~~~~~~~~~----~~~--~~~~i~Dt~G~~~~~-------~~~~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRV-LPEITIPADVT----PER--VPTTIVDTSSRPQDR-------ANLAA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCc-ccceEeeeeec----CCe--EEEEEEeCCCchhhh-------HHHhh
Confidence 7999999999999999999987532 223322 11111111111 111 268999999986431 13344
Q ss_pred HhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH------HHHHHHHHHhc-CCCc
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR------LQSLTEEILKI-GCDK 255 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~------~~~l~~~l~~~-g~~~ 255 (310)
.+..+|++++|+|++++.+++... .|...+..+. .+.|+++|+||+|+.+.... ...+.+.+... .+.+
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e 143 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG---VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVE 143 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEE
Confidence 567899999999999988888764 5666776543 26899999999999764321 12222333332 5667
Q ss_pred cccCccCCHHHHHHHHhhcc
Q 021615 256 VTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~ 275 (310)
+||+++.|++++|..+....
T Consensus 144 ~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 144 CSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred eccccccCHHHHHHHHHHHh
Confidence 99999999999999876544
No 119
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.80 E-value=6.5e-19 Score=150.28 Aligned_cols=159 Identities=16% Similarity=0.142 Sum_probs=105.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|+|||||+++|.+.... ..+..|+.......+.... ... ..+.+|||||+.+... ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~---~~~--~~l~i~Dt~G~~~~~~-------~~~ 67 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPN---GKI--IELALWDTAGQEEYDR-------LRP 67 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecC---CcE--EEEEEEECCCchhHHH-------HHH
Confidence 37999999999999999999987632 2222222221122222210 111 2689999999865421 222
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-----HHHHHHHHHHhc---CC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEILKI---GC 253 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----~~~~l~~~l~~~---g~ 253 (310)
.+++.+|++++|+|+++..++++.. .|..++..+. .+.|+++|+||+|+..... ...+..+..... .+
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~ 144 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC---PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAY 144 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEE
Confidence 3467899999999999988888774 4666665543 3689999999999865320 112222223333 44
Q ss_pred CccccCccCCHHHHHHHHhhccCC
Q 021615 254 DKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
.++|++++.|+.++|..+...+..
T Consensus 145 ~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 145 LECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHHHh
Confidence 679999999999999998776643
No 120
>PLN03118 Rab family protein; Provisional
Probab=99.80 E-value=4.7e-19 Score=154.52 Aligned_cols=163 Identities=17% Similarity=0.122 Sum_probs=106.7
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..++|+++|.+|||||||+++|++..... ..+.++.......+..+. .. ..+.+|||||+.++.. .
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~----~~--~~l~l~Dt~G~~~~~~-------~ 78 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGG----KR--LKLTIWDTAGQERFRT-------L 78 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEECC----EE--EEEEEEECCCchhhHH-------H
Confidence 44789999999999999999999875422 111111111111222111 11 1689999999876522 2
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCcc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKV 256 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~ 256 (310)
...+++.+|++++|+|+++..+++.+.. |...+..+.. ..+.|+++|+||+|+...... .+......... .+.++
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~ 157 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYST-NQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLEC 157 (211)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEE
Confidence 2345678999999999999888887764 4455554432 235799999999999653221 12222222333 35568
Q ss_pred ccCccCCHHHHHHHHhhccCCc
Q 021615 257 TSETELSSEDAVKSLSTEGGEA 278 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~~~~ 278 (310)
|++++.|++++|..++......
T Consensus 158 SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 158 SAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999998766443
No 121
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.80 E-value=1e-18 Score=144.23 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=109.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
||+++|++|||||||++++++.. ....+..++.......+.... .. ..+.+||+||..+.. .....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~----~~--~~~~l~D~~g~~~~~-------~~~~~ 66 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDG----ET--YTLDILDTAGQEEFS-------AMRDL 66 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECC----EE--EEEEEEECCChHHHH-------HHHHH
Confidence 58999999999999999999876 334455555443333333221 01 268999999986531 12334
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccCc
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSET 260 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~~ 260 (310)
.++.+|++++|+|.+++.++.+...++..+...... ...|+++|+||+|+..... ..+........ ..+..+|+++
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 145 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKD 145 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCC
Confidence 567899999999999988888887777777654321 3689999999999986321 22333333333 3466799999
Q ss_pred cCCHHHHHHHHhhc
Q 021615 261 ELSSEDAVKSLSTE 274 (310)
Q Consensus 261 ~~gi~~l~~~l~~~ 274 (310)
+.|+.++++.+...
T Consensus 146 ~~~i~~l~~~l~~~ 159 (160)
T cd00876 146 NINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998653
No 122
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.80 E-value=1.2e-18 Score=144.48 Aligned_cols=151 Identities=25% Similarity=0.255 Sum_probs=99.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
+|+++|.+|||||||+++|++..... .. +|.......+.... . ..+.+|||||+... ...+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~--~t~~~~~~~~~~~~-----~--~~l~i~D~~G~~~~-------~~~~~~ 63 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TI--PTVGFNVEMLQLEK-----H--LSLTVWDVGGQEKM-------RTVWKC 63 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-cc--CccCcceEEEEeCC-----c--eEEEEEECCCCHhH-------HHHHHH
Confidence 58999999999999999999876321 11 22221222222111 1 27899999998543 234455
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hc------CCCc
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KI------GCDK 255 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~------g~~~ 255 (310)
++..+|++++|+|++++.++.....++.++... ....+.|+++|+||+|+..... .+++...+. .+ .+.+
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~ 141 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGALT-AEEITRRFKLKKYCSDRDWYVQP 141 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccCcC-HHHHHHHcCCcccCCCCcEEEEe
Confidence 678899999999999877666665555554332 1224789999999999965321 233333321 11 2445
Q ss_pred cccCccCCHHHHHHHHhh
Q 021615 256 VTSETELSSEDAVKSLST 273 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~ 273 (310)
+||+++.|++++|+.++.
T Consensus 142 ~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 142 CSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cccccCCChHHHHHHHhc
Confidence 899999999999998753
No 123
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.80 E-value=7.1e-19 Score=150.12 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=106.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..||+++|.+++|||||++++...... ..+..|........+..+ ...+ .+.+|||+|..++.. + .
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~-~~~~pT~~~~~~~~~~~~----~~~~--~l~iwDtaG~e~~~~----~---~ 70 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEID----TQRI--ELSLWDTSGSPYYDN----V---R 70 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC-CccCCceeeeeEEEEEEC----CEEE--EEEEEECCCchhhHh----h---h
Confidence 357999999999999999999976521 222222211111112211 1112 689999999865522 2 2
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc----------------HhHHHHH
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEA----------------RDRLQSL 244 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~----------------~~~~~~l 244 (310)
..+++.+|++++|+|++++.+++.+ ..|..++..+.+ +.|+++|+||+|+.+. .+..+.+
T Consensus 71 ~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (182)
T cd04172 71 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANM 147 (182)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHH
Confidence 2346789999999999999999987 788888887653 6899999999998541 1123333
Q ss_pred HHHHHhcCCCccccCccCC-HHHHHHHHhh
Q 021615 245 TEEILKIGCDKVTSETELS-SEDAVKSLST 273 (310)
Q Consensus 245 ~~~l~~~g~~~~sa~~~~g-i~~l~~~l~~ 273 (310)
.+.+....+.++||+++.| +.++|..+..
T Consensus 148 a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 148 AKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred HHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 3333223466799999998 9999988755
No 124
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.80 E-value=3.2e-19 Score=153.30 Aligned_cols=156 Identities=18% Similarity=0.156 Sum_probs=105.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccc-eEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL-GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~-~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.||+++|.+|||||||++++...... ..+. .|..... ..+..+ ... ..+.+|||||+.++.. + .
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~-~~~~-~t~~~~~~~~~~~~----~~~--~~l~i~Dt~G~e~~~~----l---~ 68 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFP-KEYI-PTVFDNYSAQTAVD----GRT--VSLNLWDTAGQEEYDR----L---R 68 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-cCCC-CceEeeeEEEEEEC----CEE--EEEEEEECCCchhhhh----h---h
Confidence 58999999999999999999976521 1121 2221111 111111 111 2689999999976522 2 2
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----------------HHHHH
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD----------------RLQSL 244 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----------------~~~~l 244 (310)
..+++.+|++++|+|++++.+++.+. .|..++..+. .+.|+++|+||+|+.+... ..+.+
T Consensus 69 ~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 145 (191)
T cd01875 69 TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGAL 145 (191)
T ss_pred hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHH
Confidence 23467899999999999999999886 5777776543 3689999999999965421 11122
Q ss_pred HHHHHhcCCCccccCccCCHHHHHHHHhhccC
Q 021615 245 TEEILKIGCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 245 ~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
.+.+....+.++||+++.|++++|..++....
T Consensus 146 a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 146 AKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred HHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 22222235667999999999999999987653
No 125
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.80 E-value=6.5e-19 Score=149.12 Aligned_cols=154 Identities=18% Similarity=0.159 Sum_probs=102.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||+.++..... ...+..|........+..+ ... ..+.+|||||..+... +. .
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~----~~~--~~l~i~Dt~G~~~~~~----~~---~ 67 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVD----GKP--VNLGLWDTAGQEDYDR----LR---P 67 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCCcceeeeEEEEEEC----CEE--EEEEEEECCCchhhhh----hh---h
Confidence 4799999999999999999997542 1222222211111111111 111 2689999999865522 12 2
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----------------HHHHHH
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD----------------RLQSLT 245 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----------------~~~~l~ 245 (310)
.++..+|++++|+|++++.+++... .|...+.... .+.|+++|+||+|+.+... ....+.
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 144 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 144 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 3467899999999999998888874 5767676543 3689999999999964321 111222
Q ss_pred HHHHhcCCCccccCccCCHHHHHHHHhh
Q 021615 246 EEILKIGCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 246 ~~l~~~g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
+.+....+.++||+++.|++++|+.++.
T Consensus 145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 145 KEIGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHcCCcEEEEecccccCCHHHHHHHHHH
Confidence 2222224567999999999999999865
No 126
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.80 E-value=6.1e-19 Score=151.27 Aligned_cols=158 Identities=14% Similarity=0.089 Sum_probs=106.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeecc-ceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~-~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.||+++|.+|+|||||+++|++......++..|..... ...+... +.. ..+.+|||||..+... + .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----~~~--~~l~i~D~~G~~~~~~----~---~ 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVG----ERV--VTLGIWDTAGSERYEA----M---S 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEEC----CEE--EEEEEEECCCchhhhh----h---h
Confidence 37999999999999999999987654333433322111 1112211 111 1578999999865422 1 2
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-----HHHHHHHHHHhc--CCC
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEILKI--GCD 254 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----~~~~l~~~l~~~--g~~ 254 (310)
..++..+|++++|+|+++..+++....|..++.... .+.|+++|+||+|+..... ..+++.+..... .+.
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~ 144 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHF 144 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC---CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEE
Confidence 234568999999999999888888777888877643 3689999999999864321 012233323333 345
Q ss_pred ccccCccCCHHHHHHHHhhccC
Q 021615 255 KVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
++|++++.|+.++|+.++....
T Consensus 145 ~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 145 ETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999886553
No 127
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=7.8e-19 Score=169.26 Aligned_cols=153 Identities=25% Similarity=0.318 Sum_probs=112.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~~ 180 (310)
++|+++|.+|||||||+|+|++.+.. +.+++++|.+...+.+.... ..+.+|||||+.+... ....+...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~~~~~~ 73 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--------REFILIDTGGIEPDDDGFEKQIREQ 73 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--------cEEEEEECCCCCCcchhHHHHHHHH
Confidence 68999999999999999999998764 47889999887777665443 2799999999976321 11223444
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC---CCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g---~~~~s 257 (310)
...++..+|++++|+|+.++....+. .+.+.+.. .++|+++|+||+|+.+..... ..+..++ +..+|
T Consensus 74 ~~~~~~~ad~il~vvd~~~~~~~~~~-~~~~~l~~-----~~~piilv~NK~D~~~~~~~~----~~~~~lg~~~~~~iS 143 (435)
T PRK00093 74 AELAIEEADVILFVVDGRAGLTPADE-EIAKILRK-----SNKPVILVVNKVDGPDEEADA----YEFYSLGLGEPYPIS 143 (435)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCcEEEEEECccCccchhhH----HHHHhcCCCCCEEEE
Confidence 56677899999999999876554443 23345554 268999999999976532222 2223444 44589
Q ss_pred cCccCCHHHHHHHHhh
Q 021615 258 SETELSSEDAVKSLST 273 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~ 273 (310)
++++.|+.++++.+..
T Consensus 144 a~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 144 AEHGRGIGDLLDAILE 159 (435)
T ss_pred eeCCCCHHHHHHHHHh
Confidence 9999999999999876
No 128
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.80 E-value=1.9e-19 Score=145.29 Aligned_cols=168 Identities=19% Similarity=0.126 Sum_probs=120.0
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
...+||+++|.+|+|||||+-+++..... +...+|+ +-....+..+. ..+ ++.||||+|++++.. +
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd--~~~~~tIGvDFkvk~m~vdg----~~~--KlaiWDTAGqErFRt----L 76 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFD--DLHPTTIGVDFKVKVMQVDG----KRL--KLAIWDTAGQERFRT----L 76 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccC--ccCCceeeeeEEEEEEEEcC----ceE--EEEEEeccchHhhhc----c
Confidence 34578999999999999999999976532 2222333 22222222222 122 899999999988743 3
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCC
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCD 254 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~ 254 (310)
... +++.|.++++|+|.+..+++..+..|.+|+..|..+. +.-.++|+||+|...+... .++-.+..++ +-+.
T Consensus 77 TpS---yyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~-diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFi 152 (209)
T KOG0080|consen 77 TPS---YYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNP-DIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFI 152 (209)
T ss_pred CHh---HhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCc-cHhHhhhcccccchhcccccHHHHHHHHHhhCcEEE
Confidence 334 4568999999999999999999999999999997543 4556789999998743221 1222223333 3366
Q ss_pred ccccCccCCHHHHHHHHhhccCCcccccc
Q 021615 255 KVTSETELSSEDAVKSLSTEGGEADLLSS 283 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~~~~~~~~~ 283 (310)
++||++.+++...|+.|.....+.+.+.+
T Consensus 153 E~SAkt~~~V~~~FeelveKIi~tp~l~~ 181 (209)
T KOG0080|consen 153 ECSAKTRENVQCCFEELVEKIIETPSLWE 181 (209)
T ss_pred EcchhhhccHHHHHHHHHHHHhcCcchhh
Confidence 79999999999999999998877766543
No 129
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.80 E-value=1.9e-19 Score=148.52 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=117.6
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-----CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 174 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-----~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~ 174 (310)
+.+.||.++|.+|+|||||+|+++..+... -..-|-|.+. .++ . .. ..++||||+|++++.+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev---~Vd--~----~~--vtlQiWDTAGQERFqs-- 73 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEV---QVD--D----RS--VTLQIWDTAGQERFQS-- 73 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEE---EEc--C----eE--EEEEEEecccHHHhhh--
Confidence 456789999999999999999998765211 1122333321 111 1 11 2689999999998844
Q ss_pred chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC-C-CCCCCEEEEEeCCCCCCc------HhHHHHHHH
Q 021615 175 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-D-YLERPFIVVLNKIDLPEA------RDRLQSLTE 246 (310)
Q Consensus 175 ~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~-~-~~~~p~ivv~NK~Dl~~~------~~~~~~l~~ 246 (310)
++-.|+ +.+|++++|+|..++.+++.++.|++|+..+.. . ...-|+|+++||+|+.+. ......+..
T Consensus 74 --Lg~aFY---RgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~ 148 (210)
T KOG0394|consen 74 --LGVAFY---RGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK 148 (210)
T ss_pred --ccccee---cCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH
Confidence 344554 489999999999999999999999999876642 2 235799999999999763 223445555
Q ss_pred HHHhcCCCccccCccCCHHHHHHHHhhccCC
Q 021615 247 EILKIGCDKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 247 ~l~~~g~~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
.-..+.+.++|||...++.++|...+..+..
T Consensus 149 s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 149 SKGNIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred hcCCceeEEecccccccHHHHHHHHHHHHHh
Confidence 5556778889999999999999998776644
No 130
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.80 E-value=6.7e-19 Score=150.18 Aligned_cols=159 Identities=16% Similarity=0.172 Sum_probs=103.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||++++...... ...|..+.......+... +.. ...+.+|||||+.+. ...+.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~---~~~--~~~l~l~Dt~G~~~~-------~~~~~ 70 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLG---NSK--GITFHFWDVGGQEKL-------RPLWK 70 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeecc---CCC--ceEEEEEECCCcHhH-------HHHHH
Confidence 57999999999999999999876532 222222111111112110 001 127899999998543 22334
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hc------CCC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KI------GCD 254 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~------g~~ 254 (310)
.+++.||++++|+|+++..+++....+..++..+.. ..++|+++|+||+|+..... .+.+...+. .. .+.
T Consensus 71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 148 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALS-VSEVEKLLALHELSASTPWHVQ 148 (183)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCC-HHHHHHHhCccccCCCCceEEE
Confidence 456789999999999987777777666666655432 23689999999999874311 122222221 11 244
Q ss_pred ccccCccCCHHHHHHHHhhccC
Q 021615 255 KVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
++||+++.|+++++..+.....
T Consensus 149 ~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 149 PACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred EeecccCCCHHHHHHHHHHHHH
Confidence 6899999999999999876663
No 131
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.80 E-value=1.7e-18 Score=143.62 Aligned_cols=158 Identities=19% Similarity=0.137 Sum_probs=104.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
+||+++|++|||||||+++++..... ..+..++..........+ ... ..+.+|||||+.+.. .+. .
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~----~~~--~~~~i~D~~g~~~~~----~~~---~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLD----GED--VQLNILDTAGQEDYA----AIR---D 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEEC----CEE--EEEEEEECCChhhhh----HHH---H
Confidence 47999999999999999999976532 233333322211111111 111 268999999986542 222 2
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-hHHHHHHHHHHh--cCCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~l~~~l~~--~g~~~~sa~ 259 (310)
..++.+|++++|+|.+++.++.....+...+..... ..+.|+++|+||+|+.... ............ ..+.++|++
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAK 145 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCC
Confidence 345688999999999988777777777666665422 2479999999999997621 112222222333 345669999
Q ss_pred ccCCHHHHHHHHhhcc
Q 021615 260 TELSSEDAVKSLSTEG 275 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~ 275 (310)
++.|++++|..++...
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 146 TRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987544
No 132
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.80 E-value=1e-18 Score=146.63 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=105.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
++|+++|.+|||||||++++.+... ...+..|+.......+.... . ...+.+|||||+.++.. +.+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~~----~~~--- 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF-IESYDPTIEDSYRKQVEIDG----R--QCDLEILDTAGTEQFTA----MRE--- 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECC----E--EEEEEEEeCCCcccchh----hhH---
Confidence 4799999999999999999997653 22222222211111122111 1 12689999999876532 222
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCcccc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTS 258 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~sa 258 (310)
..++.++++++|+|.+++.+++....|...+.... ...+.|+++++||+|+..... ....+.+.+....+.++||
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 146 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIK-DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSA 146 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeC
Confidence 33457999999999999888888888877776532 124789999999999975422 1122222222234667999
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|+.++|..++...
T Consensus 147 ~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 147 RKRTNVDEVFIDLVRQI 163 (168)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987643
No 133
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=8.4e-19 Score=168.70 Aligned_cols=154 Identities=25% Similarity=0.297 Sum_probs=114.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 181 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~~~ 181 (310)
+|++||.||||||||+|+|++....+ .+++++|.+.....+.... ..+.+|||||+..... ....+....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--------~~~~liDTpG~~~~~~~~~~~~~~~~ 72 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--------REFILIDTGGIEEDDDGLDKQIREQA 72 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--------eEEEEEECCCCCCcchhHHHHHHHHH
Confidence 58999999999999999999987654 8899999887777665443 2799999999854321 123344555
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC---Ccccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---DKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~---~~~sa 258 (310)
..+++.+|++++|+|+.++....+. .+.+.++. .++|+++|+||+|+....... ..+..+++ ..+||
T Consensus 73 ~~~~~~ad~vl~vvD~~~~~~~~d~-~i~~~l~~-----~~~piilVvNK~D~~~~~~~~----~~~~~lg~~~~~~vSa 142 (429)
T TIGR03594 73 EIAIEEADVILFVVDGREGLTPEDE-EIAKWLRK-----SGKPVILVANKIDGKKEDAVA----AEFYSLGFGEPIPISA 142 (429)
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----hCCCEEEEEECccCCcccccH----HHHHhcCCCCeEEEeC
Confidence 6678899999999999886555543 34555655 368999999999987643322 22345555 45899
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|+.++++.+....
T Consensus 143 ~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 143 EHGRGIGDLLDAILELL 159 (429)
T ss_pred CcCCChHHHHHHHHHhc
Confidence 99999999999987655
No 134
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.79 E-value=7.7e-19 Score=156.85 Aligned_cols=159 Identities=11% Similarity=0.124 Sum_probs=109.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||++++++.... ..+..|+.+.....+... ...+ .+.||||+|..++.. + ..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~-~~y~pTi~d~~~k~~~i~----~~~~--~l~I~Dt~G~~~~~~----~---~~ 66 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFE-EQYTPTIEDFHRKLYSIR----GEVY--QLDILDTSGNHPFPA----M---RR 66 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCChhHhEEEEEEEC----CEEE--EEEEEECCCChhhhH----H---HH
Confidence 37999999999999999999876532 233333322222222221 1112 688999999865421 1 12
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC-------CCCCCCEEEEEeCCCCCCc-HhHHHHHHHHHHh---c
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-------DYLERPFIVVLNKIDLPEA-RDRLQSLTEEILK---I 251 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~-------~~~~~p~ivv~NK~Dl~~~-~~~~~~l~~~l~~---~ 251 (310)
.++..+|++++|+|+++..+++.+..|.+++..... ...+.|+++|+||+|+... ....+++.+.+.. .
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~ 146 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENC 146 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCC
Confidence 235689999999999999999988888888865421 2246899999999999742 1223444444432 3
Q ss_pred CCCccccCccCCHHHHHHHHhhcc
Q 021615 252 GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 252 g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+.++||+++.|++++|..+...+
T Consensus 147 ~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 147 AYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 467799999999999999987754
No 135
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.79 E-value=7.7e-19 Score=147.79 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=103.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHH
Q 021615 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 184 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~ 184 (310)
|+++|.+|||||||++++.+..... .+..+........+..+ ... ..+.+|||||+.+.... . ...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~--~~~~i~Dt~G~~~~~~~----~---~~~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE-DYVPTVFENYSADVEVD----GKP--VELGLWDTAGQEDYDRL----R---PLS 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC-CCCCcEEeeeeEEEEEC----CEE--EEEEEEECCCCcccchh----c---hhh
Confidence 5799999999999999999875322 22222221111122211 111 16899999998765321 1 234
Q ss_pred hhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH----------------HHHHHHH
Q 021615 185 LRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----------------LQSLTEE 247 (310)
Q Consensus 185 l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~----------------~~~l~~~ 247 (310)
+..+|++++|+|+++..+++.+. .|...+..+. .+.|+++|+||+|+...... ...+.+.
T Consensus 67 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 67 YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 56899999999999988888774 4777776653 37899999999999753221 1122222
Q ss_pred HHhcCCCccccCccCCHHHHHHHHhhcc
Q 021615 248 ILKIGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 248 l~~~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+....+.++|++++.|++++|..+...+
T Consensus 144 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 144 IGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 2222456799999999999999987654
No 136
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.79 E-value=1.6e-18 Score=147.94 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=104.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeecc--ceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN--LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~--~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.||+++|.+|||||||++++.+..... .+. .|.... ...+..+. .. ..+.+|||+|..++.. .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~-~T~g~~~~~~~i~~~~----~~--~~l~iwDt~G~~~~~~-------~ 65 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE-DYI-QTLGVNFMEKTISIRG----TE--ITFSIWDLGGQREFIN-------M 65 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCC-CccceEEEEEEEEECC----EE--EEEEEEeCCCchhHHH-------h
Confidence 379999999999999999998765322 222 222111 11222211 11 2689999999865421 2
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc---Hh---HHHHHHHHHHhc--C
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA---RD---RLQSLTEEILKI--G 252 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~---~~---~~~~l~~~l~~~--g 252 (310)
+..+++.+|++++|+|++++.+++++..|..++..+.+ ...| ++|+||+|+... .+ ..+...+..... .
T Consensus 66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~ 142 (182)
T cd04128 66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAP 142 (182)
T ss_pred hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCE
Confidence 23456789999999999999999998888888876543 2356 678999999531 11 112222222233 3
Q ss_pred CCccccCccCCHHHHHHHHhhccC
Q 021615 253 CDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+.++||+++.|++++|..++..+.
T Consensus 143 ~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 143 LIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 566999999999999999877663
No 137
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.79 E-value=2.7e-18 Score=141.90 Aligned_cols=157 Identities=27% Similarity=0.358 Sum_probs=107.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC-CchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~-~~~l~~~ 180 (310)
.+|+++|.+|+|||||+|+|++..... .+.+.+|............ ..+.+|||||+.+.... ...+...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~liDtpG~~~~~~~~~~~~~~~ 75 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDD--------AQIIFVDTPGIHKPKKKLGERMVKA 75 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCC--------eEEEEEECCCCCcchHHHHHHHHHH
Confidence 569999999999999999999887543 4555566544444433221 26899999998765322 1122333
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc----CCCcc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI----GCDKV 256 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~----g~~~~ 256 (310)
....+..+|++++|+|++++.... ...+...+..+ +.|+++|+||+|+....+....+.+.+... .+..+
T Consensus 76 ~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~-----~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (168)
T cd04163 76 AWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS-----KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPI 149 (168)
T ss_pred HHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh-----CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEE
Confidence 455678899999999999763222 23344455442 689999999999985444444444444432 34558
Q ss_pred ccCccCCHHHHHHHHhh
Q 021615 257 TSETELSSEDAVKSLST 273 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~ 273 (310)
|++.+.|++++++.+..
T Consensus 150 s~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 150 SALKGENVDELLEEIVK 166 (168)
T ss_pred EeccCCChHHHHHHHHh
Confidence 99999999999998854
No 138
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.79 E-value=1.1e-18 Score=148.81 Aligned_cols=154 Identities=21% Similarity=0.188 Sum_probs=101.0
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|++|||||||++++...... . + .+|.......+.... ..+.+|||||+.+. ...+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~-~-~~T~~~~~~~~~~~~--------~~~~l~D~~G~~~~-------~~~~ 78 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV-T-T-IPTIGFNVETVEYKN--------LKFTMWDVGGQDKL-------RPLW 78 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-c-c-CCccccceEEEEECC--------EEEEEEECCCCHhH-------HHHH
Confidence 468999999999999999999754321 1 1 123333333333221 27899999998543 2233
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-------CCC
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCD 254 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-------g~~ 254 (310)
..+++.+|++|+|+|+++..++.+...++..+... ....+.|+++|+||+|+.+... .+++.+.+... .+.
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~ 156 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLSE-DELRDAVLLVFANKQDLPNAMS-TTEVTEKLGLHSVRQRNWYIQ 156 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhC-HhhcCCCEEEEEeCCCCCCCCC-HHHHHHHhCCCcccCCcEEEE
Confidence 45578999999999999877666655444443221 1224689999999999875322 22333333211 123
Q ss_pred ccccCccCCHHHHHHHHhhcc
Q 021615 255 KVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~ 275 (310)
++||+++.|+.++|..++...
T Consensus 157 ~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 157 GCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred eeeCCCCCCHHHHHHHHHHHH
Confidence 579999999999999987644
No 139
>PLN03108 Rab family protein; Provisional
Probab=99.79 E-value=1.5e-18 Score=151.33 Aligned_cols=161 Identities=15% Similarity=0.046 Sum_probs=108.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...||+|+|.+|+|||||+++|++.+......+....+.....+.... .. ..+.+|||||..... ..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~----~~--i~l~l~Dt~G~~~~~-------~~ 71 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN----KP--IKLQIWDTAGQESFR-------SI 71 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECC----EE--EEEEEEeCCCcHHHH-------HH
Confidence 347899999999999999999998754332222211111122222211 11 168899999986442 22
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~s 257 (310)
...++..+|++++|+|+++..+++.+..|...+..+.. ...|+++|+||+|+..... ..++..+.... +.+.++|
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 149 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 149 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 34556789999999999998888888778777765432 3689999999999965321 12222223333 3456689
Q ss_pred cCccCCHHHHHHHHhhccC
Q 021615 258 SETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~~ 276 (310)
++++.|+.++|..++....
T Consensus 150 a~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 150 AKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999877653
No 140
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.79 E-value=1.1e-18 Score=145.43 Aligned_cols=150 Identities=16% Similarity=0.146 Sum_probs=103.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
+|+++|.+|||||||++++....... .++ ++.......+..+. .. ..+.+|||+|.... .
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~-~~~-~~~~~~~~~i~~~~----~~--~~l~i~D~~g~~~~------------~ 61 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQ-LES-PEGGRFKKEVLVDG----QS--HLLLIRDEGGAPDA------------Q 61 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC-CCC-CCccceEEEEEECC----EE--EEEEEEECCCCCch------------h
Confidence 79999999999999999987654211 111 11111111222221 11 26899999998531 2
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC--cHh----HHHHHHHHHHhcCCCccc
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE--ARD----RLQSLTEEILKIGCDKVT 257 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~--~~~----~~~~l~~~l~~~g~~~~s 257 (310)
+++.+|++++|+|.++..+++....|+.++..+.. ..+.|+++|+||+|+.. ..+ ..+.+.+....+.+.++|
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 140 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETC 140 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEe
Confidence 34579999999999999999998889888877642 23589999999999852 111 122333333345677899
Q ss_pred cCccCCHHHHHHHHhhc
Q 021615 258 SETELSSEDAVKSLSTE 274 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~ 274 (310)
|+++.|++++|..++..
T Consensus 141 Ak~~~~i~~~f~~~~~~ 157 (158)
T cd04103 141 ATYGLNVERVFQEAAQK 157 (158)
T ss_pred cCCCCCHHHHHHHHHhh
Confidence 99999999999998643
No 141
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.79 E-value=1.9e-18 Score=146.82 Aligned_cols=147 Identities=22% Similarity=0.257 Sum_probs=100.5
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC----
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---- 174 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~--~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~---- 174 (310)
..++|+++|.+|+|||||+|+|++.. ..+++.+++|.......++ ..+.+|||||+.......
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~liDtpG~~~~~~~~~~~~ 85 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-----------DGFRLVDLPGYGYAKVSKEEKE 85 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-----------CcEEEEeCCCCccccCChhHHH
Confidence 45789999999999999999999875 3346777788765443321 168999999986432111
Q ss_pred --chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHH
Q 021615 175 --KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEIL 249 (310)
Q Consensus 175 --~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~ 249 (310)
..+...+++....++++++|+|++++....+.. +...+.. .++|+++|+||+|+....+ ..+++.+.+.
T Consensus 86 ~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~-----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~ 159 (179)
T TIGR03598 86 KWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE-----RGIPVLIVLTKADKLKKSELNKQLKKIKKALK 159 (179)
T ss_pred HHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHh
Confidence 111223344444578999999998765555543 3345543 3689999999999976432 3455555665
Q ss_pred hc----CCCccccCccCCH
Q 021615 250 KI----GCDKVTSETELSS 264 (310)
Q Consensus 250 ~~----g~~~~sa~~~~gi 264 (310)
.. .+..+||++++|+
T Consensus 160 ~~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 160 KDADDPSVQLFSSLKKTGI 178 (179)
T ss_pred hccCCCceEEEECCCCCCC
Confidence 53 4666999999986
No 142
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.79 E-value=2.3e-18 Score=148.75 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=107.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
||+++|.+|||||||++++++.... ..+..|+.......+.... . ...+.+|||||+.++.. + ...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~----~--~~~l~i~D~~G~~~~~~----~---~~~ 66 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGG----V--SLTLDILDTSGSYSFPA----M---RKL 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECC----E--EEEEEEEECCCchhhhH----H---HHH
Confidence 5899999999999999999987532 2233333222222222211 1 12689999999865421 1 223
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--HHHHHHHHHH-h--cCCCcccc
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEIL-K--IGCDKVTS 258 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~l~~~l~-~--~g~~~~sa 258 (310)
++..+|++++|+|+++..+++....|...+..+... .+.|+++|+||+|+..... ..+...+... . ..+..+|+
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 145 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSA 145 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecC
Confidence 467899999999999988888888888777765432 3689999999999965311 1111122221 2 34567999
Q ss_pred CccCCHHHHHHHHhhccC
Q 021615 259 ETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~~ 276 (310)
+++.|+.++|+.+...+.
T Consensus 146 ~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 146 KDNENVLEVFKELLRQAN 163 (198)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999987654
No 143
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.79 E-value=6.9e-19 Score=138.87 Aligned_cols=113 Identities=34% Similarity=0.555 Sum_probs=85.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc--hHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--GLGRN 180 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~--~l~~~ 180 (310)
+|+++|.+|||||||+|+|++.+. .+++.+++|..+..+.+.... ..+.++||||+.+...... .....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--------~~~~~vDtpG~~~~~~~~~~~~~~~~ 72 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--------KKFILVDTPGINDGESQDNDGKEIRK 72 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--------EEEEEEESSSCSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--------eeEEEEeCCCCcccchhhHHHHHHHH
Confidence 589999999999999999998754 458899999988665555432 2689999999987643322 13445
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 231 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK 231 (310)
+++.+..+|+++||+|++. ...++...+.++|+ .++|+++|+||
T Consensus 73 ~~~~~~~~d~ii~vv~~~~-~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 73 FLEQISKSDLIIYVVDASN-PITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp HHHHHCTESEEEEEEETTS-HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred HHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 7788899999999999776 22344556666674 37999999998
No 144
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.79 E-value=5e-19 Score=159.40 Aligned_cols=114 Identities=37% Similarity=0.665 Sum_probs=94.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC--------C-CccCCCceEEEeCCCCCccccCCc
Q 021615 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--------G-AEKYSSEATLADLPGLIEGAHLGK 175 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~--------~-~~~~~~~~~i~DtPG~~~~~~~~~ 175 (310)
|++||.||||||||+|+|++.+..+++|||||++|+.+.+...... . .......+.++||||+.++++.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999999988999999999999998754310 0 000112489999999999998889
Q ss_pred hHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHHHhcCC
Q 021615 176 GLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNP 218 (310)
Q Consensus 176 ~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l~~~~~ 218 (310)
+++..|+.++++||++++|+|+.. .++..+++.+..||..++.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~ 133 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADL 133 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999853 2688888888888887754
No 145
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=1.3e-18 Score=150.02 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=100.5
Q ss_pred CeEEEEcCCCCcHHHHHH-HHHcCCCC----CCCCCCceeec-cceEeeC------CCCCCCccCCCceEEEeCCCCCcc
Q 021615 103 ADVGLVGLPNAGKSTLLA-AITHAKPD----IADYPFTTLMP-NLGRLDG------DPTLGAEKYSSEATLADLPGLIEG 170 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln-~L~~~~~~----i~~~~~tT~~~-~~~~v~~------~~~~~~~~~~~~~~i~DtPG~~~~ 170 (310)
.||+++|.+|||||||+. ++.+.... ...+.. |... ....... ....++..+ .+.+|||+|+.+.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~p-Ti~~~~~~~~~~~~~~~~~~~~~~~~v--~l~iwDTaG~~~~ 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVP-TVWAIDQYRVCQEVLERSRDVVDGVSV--SLRLWDTFGDHDK 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCC-ceecccceeEEeeeccccceeeCCEEE--EEEEEeCCCChhh
Confidence 589999999999999996 56544321 112211 2210 0000000 001112222 7899999998642
Q ss_pred ccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCc------------
Q 021615 171 AHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEA------------ 237 (310)
Q Consensus 171 ~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------------ 237 (310)
+. ..+++.||++++|+|.+++.+++... .|..++..+. .+.|+++|+||+|+...
T Consensus 80 ------~~---~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~~~ 147 (195)
T cd01873 80 ------DR---RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRYADLDEVNRARRPL 147 (195)
T ss_pred ------hh---cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccccccchhhhccccc
Confidence 11 12467899999999999999998886 5878887654 36899999999998631
Q ss_pred -----------HhHHHHHHHHHHhcCCCccccCccCCHHHHHHHHhh
Q 021615 238 -----------RDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 238 -----------~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
.+..+.+.+.+. +.+.++||+++.|++++|..++.
T Consensus 148 ~~~~~~~~~V~~~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 148 ARPIKNADILPPETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred ccccccCCccCHHHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHH
Confidence 112233333222 35677999999999999998864
No 146
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.79 E-value=1.8e-18 Score=145.36 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=100.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.++|+++|++|||||||+++|++..... ...|...+...+.... ..+.+|||||..+. ...+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~~--------~~~~~~D~~G~~~~-------~~~~ 75 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSDG--------FKLNVWDIGGQRAI-------RPYW 75 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECC--------EEEEEEECCCCHHH-------HHHH
Confidence 4679999999999999999999875321 1112211122333221 26899999997432 2344
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-------CCC
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GCD 254 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-------g~~ 254 (310)
..+++.||++++|+|+++...+.....+...+.... ...+.|+++++||+|+....+ .+++.+.+.-. .+.
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~-~~~i~~~l~~~~~~~~~~~~~ 153 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATAAP-AEEIAEALNLHDLRDRTWHIQ 153 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccCCC-HHHHHHHcCCcccCCCeEEEE
Confidence 556788999999999998666655544444433221 123689999999999976432 33444433211 134
Q ss_pred ccccCccCCHHHHHHHHhh
Q 021615 255 KVTSETELSSEDAVKSLST 273 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~ 273 (310)
++||+++.|++++|+++++
T Consensus 154 ~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 154 ACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EeECCCCCCHHHHHHHHhc
Confidence 6899999999999999864
No 147
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.79 E-value=1.7e-18 Score=145.64 Aligned_cols=155 Identities=16% Similarity=0.166 Sum_probs=103.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|++|+|||||++++.+.+.. ..+..+........+... ...+ .+.+|||||..+.... . .
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~----~~~~--~~~i~Dt~G~~~~~~~----~---~ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVG----GKQY--LLGLYDTAGQEDYDRL----R---P 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEC----CEEE--EEEEEeCCCccccccc----c---c
Confidence 37999999999999999999977532 222222222211122221 1112 5789999998765321 1 1
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------------HHHHHHHH
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------------LQSLTEEI 248 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~l~~~l 248 (310)
..+..+|++++|+|..++.+++... .|...+..+. .+.|+++|+||+|+.+.... .++.....
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLA 143 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 2356899999999999988887774 5666676542 47899999999998653211 11222223
Q ss_pred HhcC---CCccccCccCCHHHHHHHHhhc
Q 021615 249 LKIG---CDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 249 ~~~g---~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
...+ +.++||+++.|++++|+.++..
T Consensus 144 ~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 144 KEIGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 3343 5579999999999999988654
No 148
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.78 E-value=1.7e-18 Score=152.22 Aligned_cols=156 Identities=18% Similarity=0.170 Sum_probs=103.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.+|+++|.+|||||||++++++.......++ +|. +.....+..+. . ...+.+|||||+... +..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~-~t~~~~~~~~~i~~~~----~--~~~l~i~Dt~G~~~~------~~~- 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYD-ASGDDDTYERTVSVDG----E--ESTLVVIDHWEQEMW------TED- 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcC-CCccccceEEEEEECC----E--EEEEEEEeCCCcchH------HHh-
Confidence 4799999999999999999986653311221 111 11111222211 1 126899999998611 111
Q ss_pred HHHHhh-hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHH--hcCCCcc
Q 021615 181 FLRHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDKV 256 (310)
Q Consensus 181 ~~~~l~-~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~--~~g~~~~ 256 (310)
.++. .+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+...... .++..+... ...+.++
T Consensus 67 --~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~ 143 (221)
T cd04148 67 --SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIET 143 (221)
T ss_pred --HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEe
Confidence 1234 79999999999998888888888888876532 236899999999998654321 111112222 2345679
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||+++.|+.++|+.++...
T Consensus 144 SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 144 SAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987655
No 149
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.2e-19 Score=149.21 Aligned_cols=161 Identities=17% Similarity=0.095 Sum_probs=117.3
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
+...++||+++|.+++|||-|+.+++..+......+..-.+.....+..+. .. .+.+||||+|+.++. .+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~----k~--vkaqIWDTAGQERyr----Ai 79 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG----KT--VKAQIWDTAGQERYR----AI 79 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC----cE--EEEeeecccchhhhc----cc
Confidence 567789999999999999999999998875543322222222222222211 11 178999999998762 23
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH---hcCCC
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCD 254 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~---~~g~~ 254 (310)
.. .+.+.|-+.++|+|++...+++....|+.||+.+.. .+.++++|+||+||........+-...+. .+.+.
T Consensus 80 tS---aYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad--~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~ 154 (222)
T KOG0087|consen 80 TS---AYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFL 154 (222)
T ss_pred cc---hhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC--CCeEEEEeecchhhhhccccchhhhHhHHHhcCceEE
Confidence 33 345689999999999999999999999999998865 47899999999999874333333333333 36788
Q ss_pred ccccCccCCHHHHHHHHhh
Q 021615 255 KVTSETELSSEDAVKSLST 273 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~ 273 (310)
++||....+++.+|..+..
T Consensus 155 EtSAl~~tNVe~aF~~~l~ 173 (222)
T KOG0087|consen 155 ETSALDATNVEKAFERVLT 173 (222)
T ss_pred EecccccccHHHHHHHHHH
Confidence 8999999999999977654
No 150
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.78 E-value=5.1e-18 Score=145.80 Aligned_cols=160 Identities=21% Similarity=0.240 Sum_probs=103.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC-------CCCCCCCCceeeccceEeeCCCCCC------CccCCCceEEEeCCCCCc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAK-------PDIADYPFTTLMPNLGRLDGDPTLG------AEKYSSEATLADLPGLIE 169 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~-------~~i~~~~~tT~~~~~~~v~~~~~~~------~~~~~~~~~i~DtPG~~~ 169 (310)
.+|+++|.+|+|||||+++|++.. ......+++|.......+....... ...-...+.+|||||+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 369999999999999999999731 1112344567665544443321000 00002378999999983
Q ss_pred cccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHH
Q 021615 170 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTE 246 (310)
Q Consensus 170 ~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~ 246 (310)
.+.+.+...+..+|++++|+|+++....+..+.+. .... .+.|+++|+||+|+....+ ..+++.+
T Consensus 80 ------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 80 ------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI-----LCKKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred ------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 23445556667899999999998755444433332 2222 2579999999999975322 2333333
Q ss_pred HHH---------hcCCCccccCccCCHHHHHHHHhhcc
Q 021615 247 EIL---------KIGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 247 ~l~---------~~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+. ...+..+|++++.|++++++.|....
T Consensus 148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 322 12345699999999999999986654
No 151
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.7e-18 Score=142.31 Aligned_cols=161 Identities=16% Similarity=0.112 Sum_probs=112.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
..||+++|..+|||||||+++......- +| ..|+ +-...++.+. +..+ ++++|||+|++++.. +.
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~-~Y-qATIGiDFlskt~~l~----d~~v--rLQlWDTAGQERFrs----li- 88 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDN-TY-QATIGIDFLSKTMYLE----DRTV--RLQLWDTAGQERFRS----LI- 88 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcc-cc-cceeeeEEEEEEEEEc----CcEE--EEEEEecccHHHHhh----hh-
Confidence 3899999999999999999998764211 11 1121 1111112211 1222 899999999988733 33
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-HHHHHHHHhcC--CCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKIG--CDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~l~~~l~~~g--~~~~ 256 (310)
-.+++.+.++|.|+|+++..++++...|.+.+....... +.-+++|+||.||.+..+.. ++-....++++ +.++
T Consensus 89 --psY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~et 165 (221)
T KOG0094|consen 89 --PSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIET 165 (221)
T ss_pred --hhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEe
Confidence 356679999999999999999999999999998765311 35678899999999864422 12222333443 5568
Q ss_pred ccCccCCHHHHHHHHhhccCCc
Q 021615 257 TSETELSSEDAVKSLSTEGGEA 278 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~~~~ 278 (310)
|++.|.++..+|..+++.+-..
T Consensus 166 sak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 166 SAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred cccCCCCHHHHHHHHHHhccCc
Confidence 9999999999999988766544
No 152
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.78 E-value=4e-18 Score=149.71 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=103.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||++||.+|||||||++++++.... ..|..|........+..+ +.. ..+.+|||+|..++.. +. .
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~-~~y~pTi~~~~~~~~~~~----~~~--v~L~iwDt~G~e~~~~----l~---~ 67 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP-GSYVPTVFENYTASFEID----KRR--IELNMWDTSGSSYYDN----VR---P 67 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CccCCccccceEEEEEEC----CEE--EEEEEEeCCCcHHHHH----Hh---H
Confidence 47999999999999999999976522 222222221111122221 111 2689999999865522 11 2
Q ss_pred HHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----------------hHHHHHH
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRLQSLT 245 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----------------~~~~~l~ 245 (310)
.++..+|++++|+|++++.+++.+ ..|..++..+. .+.|+++|+||+|+.... +....+.
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 345789999999999999998887 45666666544 368999999999996531 1122222
Q ss_pred HHHHhcCCCccccCccC-CHHHHHHHHhhcc
Q 021615 246 EEILKIGCDKVTSETEL-SSEDAVKSLSTEG 275 (310)
Q Consensus 246 ~~l~~~g~~~~sa~~~~-gi~~l~~~l~~~~ 275 (310)
+.+....+.++||+++. |+.++|.......
T Consensus 145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 145 KQVGAVSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 22222346679999988 4999998876644
No 153
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=3.3e-18 Score=173.87 Aligned_cols=160 Identities=21% Similarity=0.215 Sum_probs=114.4
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc-cCCc
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA-HLGK 175 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~-~~~~ 175 (310)
.....++|+++|.||||||||+|+|++.+..+ .++|++|.+...+...... ..+.+|||||+.... ....
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~ 342 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--------TDFKLVDTGGWEADVEGIDS 342 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--------EEEEEEeCCCcCCCCccHHH
Confidence 33456789999999999999999999987654 8899999876655544332 278999999987431 1122
Q ss_pred hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC--
Q 021615 176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC-- 253 (310)
Q Consensus 176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~-- 253 (310)
.+......+++.||+++||+|+++.....+ ..+.+.|+. .++|+++|+||+|+....... ..+..+++
T Consensus 343 ~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~~~~----~~~~~lg~~~ 412 (712)
T PRK09518 343 AIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-----AGKPVVLAVNKIDDQASEYDA----AEFWKLGLGE 412 (712)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-----cCCCEEEEEECcccccchhhH----HHHHHcCCCC
Confidence 344445566789999999999987544333 345556654 479999999999987542221 22222332
Q ss_pred -CccccCccCCHHHHHHHHhhcc
Q 021615 254 -DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 254 -~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.++||+++.|+.++++.+....
T Consensus 413 ~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 413 PYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred eEEEECCCCCCchHHHHHHHHhc
Confidence 3489999999999999987765
No 154
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.78 E-value=2.6e-18 Score=144.75 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=102.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|++|||||||++++.+.... ..+..|........+..+ ...+ .+.+|||||+.+.... ..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~----~~~~--~l~i~Dt~G~~~~~~~-------~~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYVADIEVD----GKQV--ELALWDTAGQEDYDRL-------RP 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccccceEEEEEEC----CEEE--EEEEEeCCCchhhhhc-------cc
Confidence 57999999999999999999986532 122222222112223221 1111 6899999998654221 11
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------------HHHHHHH
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEEI 248 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~l~~~l 248 (310)
..+..+|++++|+|+++..+++++. .|..++..+. .+.|+++|+||+|+....... ....+..
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~ 144 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 144 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence 2457899999999999888777764 4666666543 368999999999986532211 1111112
Q ss_pred Hh---cCCCccccCccCCHHHHHHHHhhcc
Q 021615 249 LK---IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 249 ~~---~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.. ..+.++||+++.|++++|..++..+
T Consensus 145 ~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 145 NKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 22 2456799999999999999987543
No 155
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.77 E-value=3.6e-18 Score=143.11 Aligned_cols=147 Identities=22% Similarity=0.245 Sum_probs=95.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHH
Q 021615 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 184 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~ 184 (310)
|+++|.+|||||||++++.+..... .+. .|.......+... ...+.+|||||..+. ...+..+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~-~~~-pt~g~~~~~i~~~--------~~~l~i~Dt~G~~~~-------~~~~~~~ 64 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE-SVV-PTTGFNSVAIPTQ--------DAIMELLEIGGSQNL-------RKYWKRY 64 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc-ccc-ccCCcceEEEeeC--------CeEEEEEECCCCcch-------hHHHHHH
Confidence 7899999999999999999775321 111 1221112222221 127899999998654 2234456
Q ss_pred hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH------HhcC--CCc-
Q 021615 185 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI------LKIG--CDK- 255 (310)
Q Consensus 185 l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l------~~~g--~~~- 255 (310)
++.+|++++|+|+++...+.....++.++.... .+.|+++|+||+|+..... ..++.+.+ .+.+ +.+
T Consensus 65 ~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~---~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04162 65 LSGSQGLIFVVDSADSERLPLARQELHQLLQHP---PDLPLVVLANKQDLPAARS-VQEIHKELELEPIARGRRWILQGT 140 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC---CCCcEEEEEeCcCCcCCCC-HHHHHHHhCChhhcCCCceEEEEe
Confidence 789999999999998777766666666554322 4799999999999876432 22222221 1222 223
Q ss_pred -----cccCccCCHHHHHHHHh
Q 021615 256 -----VTSETELSSEDAVKSLS 272 (310)
Q Consensus 256 -----~sa~~~~gi~~l~~~l~ 272 (310)
+|+.+++|+.++|..|.
T Consensus 141 Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 141 SLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred eecCCCChhHHHHHHHHHHHHh
Confidence 45555999999998863
No 156
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.77 E-value=4.6e-18 Score=139.55 Aligned_cols=151 Identities=25% Similarity=0.324 Sum_probs=99.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
.|+++|++|||||||+++|++.+......| |.......+.... ..+.+|||||+.+. ...+..
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~--------~~~~~~D~~g~~~~-------~~~~~~ 63 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKGN--------VTLKVWDLGGQPRF-------RSMWER 63 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEECC--------EEEEEEECCCCHhH-------HHHHHH
Confidence 489999999999999999998764332222 2222222222211 26899999998543 223445
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------hcCCCcc
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGCDKV 256 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~~g~~~~ 256 (310)
++..+|++++|+|+++...+.....++..+... ....++|+++|+||+|+.+... ...+.+.+. ...+..+
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 141 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALS-VDELIEQMNLKSITDREVSCYSI 141 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcC-HHHHHHHhCcccccCCceEEEEE
Confidence 678899999999998866655554444444321 1224689999999999876432 222222221 1234568
Q ss_pred ccCccCCHHHHHHHHhh
Q 021615 257 TSETELSSEDAVKSLST 273 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~ 273 (310)
|++++.|+.++++.+..
T Consensus 142 Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 142 SCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EeccCCChHHHHHHHhh
Confidence 99999999999998753
No 157
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.77 E-value=2.5e-18 Score=154.48 Aligned_cols=111 Identities=40% Similarity=0.689 Sum_probs=90.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC---------CCCccCCCceEEEeCCCCCccccC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT---------LGAEKYSSEATLADLPGLIEGAHL 173 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~---------~~~~~~~~~~~i~DtPG~~~~~~~ 173 (310)
.++++||.||+|||||+|+|+......++|||+|++|+.+.+...+. .+.......+++.|++|+..+++.
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~ 100 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASA 100 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCccc
Confidence 46999999999999999999999988999999999999998864321 001111236899999999999999
Q ss_pred CchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHH
Q 021615 174 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEEL 213 (310)
Q Consensus 174 ~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l 213 (310)
++|++..|++|++.+|++++|+++.. -++..+++.+.+||
T Consensus 101 G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL 150 (391)
T KOG1491|consen 101 GEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEEL 150 (391)
T ss_pred CcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHH
Confidence 99999999999999999999999865 24555555555544
No 158
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.77 E-value=4.7e-18 Score=142.23 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=99.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||+++|++........+ +........+... ... ..+.+|||||+.+.... . .
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~----~~~--~~l~~~D~~g~~~~~~~----~---~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVP-TVFDNYSATVTVD----GKQ--VNLGLWDTAGQEEYDRL----R---P 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeEEEEEEC----CEE--EEEEEEeCCCccccccc----c---h
Confidence 4799999999999999999998864221111 1111111111111 111 26899999999765221 1 1
Q ss_pred HHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH------------HHHHHHHHH
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR------------LQSLTEEIL 249 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~------------~~~l~~~l~ 249 (310)
..++.+|++++|+|++++.++... ..|...+..+. .+.|+++|+||+|+...... .+...+...
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~ 143 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAK 143 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHH
Confidence 234689999999999987666554 34555665543 27999999999999765432 122223333
Q ss_pred hc---CCCccccCccCCHHHHHHHHhh
Q 021615 250 KI---GCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 250 ~~---g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
.. .+.++|++++.|+++++..+..
T Consensus 144 ~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 144 EIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 33 4566899999999999988753
No 159
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.77 E-value=5.7e-18 Score=172.02 Aligned_cols=156 Identities=24% Similarity=0.334 Sum_probs=111.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC--CchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~--~~~l~~~ 180 (310)
.+|+++|.||||||||+|+|++.+..+++++++|.+...+.+..... ++.++||||+.+.... ...+.+.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~--------~i~lvDtPG~ysl~~~~~~~s~~E~ 75 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDH--------QVTLVDLPGTYSLTTISSQTSLDEQ 75 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCce--------EEEEEECCCccccccccccccHHHH
Confidence 47999999999999999999999888899999999888888765432 7999999999765321 1123333
Q ss_pred HHH-H--hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC--CCc
Q 021615 181 FLR-H--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDK 255 (310)
Q Consensus 181 ~~~-~--l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g--~~~ 255 (310)
..+ + .+.+|++++|+|+++.+.. ..+..++.+ .++|+++|+||+|+.+.......+.+.-+.++ +..
T Consensus 76 i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e-----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvp 147 (772)
T PRK09554 76 IACHYILSGDADLLINVVDASNLERN---LYLTLQLLE-----LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIP 147 (772)
T ss_pred HHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHH-----cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEE
Confidence 222 2 2478999999999874432 234455554 37999999999998744222222222222344 455
Q ss_pred cccCccCCHHHHHHHHhhc
Q 021615 256 VTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~ 274 (310)
+|+..+.|++++.+.+...
T Consensus 148 iSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 148 LVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred EEeecCCCHHHHHHHHHHh
Confidence 8999999999999887654
No 160
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.77 E-value=3.7e-18 Score=143.96 Aligned_cols=153 Identities=19% Similarity=0.146 Sum_probs=101.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|.+|+|||||++++.+... ...+..|+.+.....+.... . ...+.+|||||+.+.... ..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~~~-------~~ 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY-PTEYVPTAFDNFSVVVLVDG----K--PVRLQLCDTAGQDEFDKL-------RP 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECC----E--EEEEEEEECCCChhhccc-------cc
Confidence 3799999999999999999987542 23344443222112222111 1 126899999999665332 11
Q ss_pred HHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----------------HHHHHH
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----------------RLQSLT 245 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----------------~~~~l~ 245 (310)
.+++.+|++++|+|.+++.+++.. +.|...+.... .+.|+++|+||+|+..... ....+.
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a 143 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALA 143 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHH
Confidence 245689999999999998888776 35766776532 3689999999999864321 122222
Q ss_pred HHHHhcCCCccccCccCCHHHHHHHHh
Q 021615 246 EEILKIGCDKVTSETELSSEDAVKSLS 272 (310)
Q Consensus 246 ~~l~~~g~~~~sa~~~~gi~~l~~~l~ 272 (310)
+......+.++||+++.|++++|+.+.
T Consensus 144 ~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 144 EKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 222222566799999999999998764
No 161
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.3e-18 Score=137.47 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=118.6
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 176 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~ 176 (310)
.+-++||++||..|+|||.|+++++..-... -.+.|+ +--+.+++... .+ .+++||||+|++++ ++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfpp--gqgatigvdfmiktvev~g----ek--iklqiwdtagqerf----rs 71 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPP--GQGATIGVDFMIKTVEVNG----EK--IKLQIWDTAGQERF----RS 71 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCC--CCCceeeeeEEEEEEEECC----eE--EEEEEeeccchHHH----HH
Confidence 4678999999999999999999999764222 112233 11122232221 12 28999999999876 33
Q ss_pred HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh---cCC
Q 021615 177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGC 253 (310)
Q Consensus 177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~---~g~ 253 (310)
+. .++.+.++++++|+|++...+++-+-.|+.|++.|.. ..+--|+|+||+|+.+..+..+.+-+.+.. .-+
T Consensus 72 it---qsyyrsahalilvydiscqpsfdclpewlreie~yan--~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyf 146 (213)
T KOG0095|consen 72 IT---QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN--NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYF 146 (213)
T ss_pred HH---HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh--cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhh
Confidence 33 4455689999999999999999999999999999964 345568999999998876666666666653 456
Q ss_pred CccccCccCCHHHHHHHHhhcc
Q 021615 254 DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.++||++.++++.+|..++..+
T Consensus 147 letsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 147 LETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hhhcccchhhHHHHHHHHHHHH
Confidence 7799999999999998887654
No 162
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.77 E-value=1.2e-17 Score=143.20 Aligned_cols=158 Identities=22% Similarity=0.232 Sum_probs=106.4
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC----
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---- 174 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~--~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~---- 174 (310)
..++|+++|.+|||||||+|+|++.+ ..+++.+++|.......+. ..+.+|||||+.......
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~l~l~DtpG~~~~~~~~~~~~ 91 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN-----------DKLRLVDLPGYGYAKVSKEEKE 91 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC-----------CeEEEeCCCCCCCcCCCchHHH
Confidence 56889999999999999999999865 3446677777654433221 279999999975421110
Q ss_pred --chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHHHHH
Q 021615 175 --KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEIL 249 (310)
Q Consensus 175 --~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~~l~ 249 (310)
..+...+++....++++++|+|++.+....+. .+...+.. .+.|+++++||+|+....+. .+.+.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~ 165 (196)
T PRK00454 92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE-----YGIPVLIVLTKADKLKKGERKKQLKKVRKALK 165 (196)
T ss_pred HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH-----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 11223334444556789999998875444332 23344443 36899999999999764322 233444444
Q ss_pred h--cCCCccccCccCCHHHHHHHHhhcc
Q 021615 250 K--IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 250 ~--~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
. ..+.++|++++.|++++++.+...+
T Consensus 166 ~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 166 FGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred hcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 3 4566789999999999999987654
No 163
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.77 E-value=4.3e-18 Score=138.64 Aligned_cols=137 Identities=21% Similarity=0.224 Sum_probs=89.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
||+++|.+|||||||+|+|++.... +. .|. .+.. .-.+|||||+... .....+....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~-~t~-----~~~~-----------~~~~iDt~G~~~~---~~~~~~~~~~ 58 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YK-KTQ-----AVEY-----------NDGAIDTPGEYVE---NRRLYSALIV 58 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---cc-cce-----eEEE-----------cCeeecCchhhhh---hHHHHHHHHH
Confidence 7999999999999999999987531 11 111 1111 1268999997311 1111222234
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC---CCccccCc
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVTSET 260 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g---~~~~sa~~ 260 (310)
.++.+|++++|+|++++.++... .|.+. ...|+++|+||+|+.+.....+...+.+...+ +.++|+++
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~~-~~~~~--------~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFPP-GFASI--------FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCCh-hHHHh--------ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCC
Confidence 46899999999999987765442 23221 13599999999999753222333333344433 45589999
Q ss_pred cCCHHHHHHHHh
Q 021615 261 ELSSEDAVKSLS 272 (310)
Q Consensus 261 ~~gi~~l~~~l~ 272 (310)
+.|++++|..++
T Consensus 130 ~~gi~~l~~~l~ 141 (142)
T TIGR02528 130 EQGLEALVDYLN 141 (142)
T ss_pred CCCHHHHHHHHh
Confidence 999999999874
No 164
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.77 E-value=1.1e-17 Score=136.44 Aligned_cols=155 Identities=25% Similarity=0.195 Sum_probs=100.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
++|+++|.+|+|||||+++|++........+++|.......+..... . ..+.+|||||+.+... +..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~D~~G~~~~~~----~~~--- 68 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGK----T--YKFNLLDTAGQEDYRA----IRR--- 68 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCE----E--EEEEEEECCCcccchH----HHH---
Confidence 58999999999999999999998844466677777655544433220 0 2689999999765422 222
Q ss_pred HHhhhcCEEEEecccCCC-CcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHHHHHHHHhcCCCcccc
Q 021615 183 RHLRRTRLLVHVIDAAAE-NPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSLTEEILKIGCDKVTS 258 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~-~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~l~~~l~~~g~~~~sa 258 (310)
.....++.++.++|.... ....... .+...+..... .+.|+++|+||+|+.... +........+....+.++|+
T Consensus 69 ~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa 146 (161)
T TIGR00231 69 LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE--SNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSA 146 (161)
T ss_pred HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc--cCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeec
Confidence 223456777777776654 3333222 33344444332 278999999999997642 22222333333445677999
Q ss_pred CccCCHHHHHHHHh
Q 021615 259 ETELSSEDAVKSLS 272 (310)
Q Consensus 259 ~~~~gi~~l~~~l~ 272 (310)
+.+.|+.++++.+.
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999998863
No 165
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.2e-18 Score=141.58 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=111.5
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceE--eeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR--LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~--v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
..+|+.++|..|||||.|+.+++...... .+ -.|+....+. +..+. . .-+++||||+|+..+ .++.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~-~h-d~TiGvefg~r~~~id~----k--~IKlqiwDtaGqe~f----rsv~ 72 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQP-VH-DLTIGVEFGARMVTIDG----K--QIKLQIWDTAGQESF----RSVT 72 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccc-cc-cceeeeeeceeEEEEcC----c--eEEEEEEecCCcHHH----HHHH
Confidence 35789999999999999999999876322 11 1333222221 22111 1 238999999999766 3334
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCC
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCD 254 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~ 254 (310)
+ ++++.+-++++|+|+...+++..+..|+.+++.+.. .+..+++++||+|+....+ .-+.+.++ ..+-+.
T Consensus 73 ~---syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~--~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e-hgLifm 146 (216)
T KOG0098|consen 73 R---SYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSN--ENMVIMLIGNKSDLEARREVSKEEGEAFARE-HGLIFM 146 (216)
T ss_pred H---HHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcC--CCcEEEEEcchhhhhccccccHHHHHHHHHH-cCceee
Confidence 4 445688999999999999999999999999998752 4677899999999986533 23334333 223344
Q ss_pred ccccCccCCHHHHHHHHhhcc
Q 021615 255 KVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~ 275 (310)
++||+++.|++++|...+...
T Consensus 147 ETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 147 ETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred hhhhhhhhhHHHHHHHHHHHH
Confidence 699999999999998776543
No 166
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=3.1e-17 Score=138.82 Aligned_cols=157 Identities=27% Similarity=0.269 Sum_probs=110.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~--~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
..+.|+++|.+|||||||||+|++.+ ..++..|+.|+.++...+. ..+.++|.||+.= +.-.....
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-----------~~~~lVDlPGYGy-Akv~k~~~ 90 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-----------DELRLVDLPGYGY-AKVPKEVK 90 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-----------CcEEEEeCCCccc-ccCCHHHH
Confidence 45679999999999999999999987 6679999999988877664 1489999999852 22222222
Q ss_pred HHH----HHHh---hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH---HHHHHHH
Q 021615 179 RNF----LRHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL---QSLTEEI 248 (310)
Q Consensus 179 ~~~----~~~l---~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~---~~l~~~l 248 (310)
..| ..++ ..-.++++++|+..+....+. .+.+.+.. .+.|+++|+||+|.....+.. ..+.+.+
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~-----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l 164 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE-----LGIPVIVVLTKADKLKKSERNKQLNKVAEEL 164 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH-----cCCCeEEEEEccccCChhHHHHHHHHHHHHh
Confidence 222 2233 345788999999886655554 34456665 479999999999999865443 3344333
Q ss_pred Hh-cC----CCccccCccCCHHHHHHHHhhcc
Q 021615 249 LK-IG----CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 249 ~~-~g----~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.. .. +...|+..+.|++++-..+....
T Consensus 165 ~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 165 KKPPPDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred cCCCCccceEEEEecccccCHHHHHHHHHHHh
Confidence 21 11 33368999999999888775543
No 167
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.76 E-value=2.3e-17 Score=139.98 Aligned_cols=151 Identities=21% Similarity=0.216 Sum_probs=101.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCC----------------CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIAD----------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 167 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~----------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~ 167 (310)
+|+++|.+|||||||+|+|++....... ..++|.......+... ...+.+|||||+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~liDtpG~ 72 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--------DRRVNFIDTPGH 72 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--------CEEEEEEeCCCc
Confidence 4899999999999999999987643311 1223333333333322 127899999998
Q ss_pred CccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHH
Q 021615 168 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSL 244 (310)
Q Consensus 168 ~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l 244 (310)
.+. ...+..++..+|++++|+|++.+....... +...+.. .+.|+++|+||+|+....+ ..+.+
T Consensus 73 ~~~-------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~~i~iv~nK~D~~~~~~~~~~~~~~ 139 (189)
T cd00881 73 EDF-------SSEVIRGLSVSDGAILVVDANEGVQPQTRE-HLRIARE-----GGLPIIVAINKIDRVGEEDLEEVLREI 139 (189)
T ss_pred HHH-------HHHHHHHHHhcCEEEEEEECCCCCcHHHHH-HHHHHHH-----CCCCeEEEEECCCCcchhcHHHHHHHH
Confidence 543 234556677999999999998766544433 3334433 3789999999999986322 23344
Q ss_pred HHHHHhc----------------CCCccccCccCCHHHHHHHHhhcc
Q 021615 245 TEEILKI----------------GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 245 ~~~l~~~----------------g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+.+... .+.++|++.+.|+.+++..+....
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 140 KELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 4444432 234489999999999999987654
No 168
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.76 E-value=9.7e-18 Score=142.03 Aligned_cols=159 Identities=14% Similarity=0.053 Sum_probs=105.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||++++++.... ..+..|+.......+.... .. ..+.+|||||+.++. ....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~l~D~~g~~~~~-------~~~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV-ESYYPTIENTFSKIIRYKG----QD--YHLEIVDTAGQDEYS-------ILPQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-cccCcchhhhEEEEEEECC----EE--EEEEEEECCChHhhH-------HHHH
Confidence 47999999999999999999977532 2222233222222222211 11 157899999986542 1222
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~sa~ 259 (310)
.++..++++++|+|.++..+++....++..+..+. ...+.|+++|+||+|+...... .+......... .+.++|++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSAR 146 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 44568999999999999888888877777665532 2246899999999998643211 11222222333 35669999
Q ss_pred ccCCHHHHHHHHhhccC
Q 021615 260 TELSSEDAVKSLSTEGG 276 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~~ 276 (310)
++.|+.+++..+.....
T Consensus 147 ~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 147 ENENVEEAFELLIEEIE 163 (180)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999877653
No 169
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.76 E-value=2.4e-17 Score=134.54 Aligned_cols=154 Identities=29% Similarity=0.332 Sum_probs=108.9
Q ss_pred EEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHh
Q 021615 107 LVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL 185 (310)
Q Consensus 107 lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l 185 (310)
++|++|+|||||+++|++.... ....+.+|............ ...+.+|||||+.+...........+...+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~ 73 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-------LGPVVLIDTPGIDEAGGLGREREELARRVL 73 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-------CCcEEEEECCCCCccccchhhHHHHHHHHH
Confidence 5899999999999999998766 46777777766665554331 127999999999887654443334555667
Q ss_pred hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHH------HHHHHhcCCCccccC
Q 021615 186 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL------TEEILKIGCDKVTSE 259 (310)
Q Consensus 186 ~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l------~~~l~~~g~~~~sa~ 259 (310)
..+|++++|+|++......... +...... .+.|+++|+||+|+....+..... ........+..+|++
T Consensus 74 ~~~d~il~v~~~~~~~~~~~~~-~~~~~~~-----~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 147 (163)
T cd00880 74 ERADLILFVVDADLRADEEEEK-LLELLRE-----RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSAL 147 (163)
T ss_pred HhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeee
Confidence 8899999999999876665544 3333332 478999999999998754332221 111112345558999
Q ss_pred ccCCHHHHHHHHhh
Q 021615 260 TELSSEDAVKSLST 273 (310)
Q Consensus 260 ~~~gi~~l~~~l~~ 273 (310)
++.|+++++..+..
T Consensus 148 ~~~~v~~l~~~l~~ 161 (163)
T cd00880 148 TGEGIDELREALIE 161 (163)
T ss_pred ccCCHHHHHHHHHh
Confidence 99999999998754
No 170
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.75 E-value=6.6e-18 Score=146.20 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=103.9
Q ss_pred EcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccce--EeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHh
Q 021615 108 VGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL 185 (310)
Q Consensus 108 vG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~--~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l 185 (310)
||.+|||||||+++++..... ..+. +|...... .+..+ ... ..+.||||||..++.. ....++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~-~~~~-~Tig~~~~~~~~~~~----~~~--~~l~iwDt~G~e~~~~-------l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-KKYV-ATLGVEVHPLVFHTN----RGP--IRFNVWDTAGQEKFGG-------LRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC-CCCC-CceeEEEEEEEEEEC----CEE--EEEEEEECCCchhhhh-------hhHHHh
Confidence 699999999999999965422 1221 22221111 11111 111 2789999999976522 223456
Q ss_pred hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH--HhcCCCccccCccCC
Q 021615 186 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI--LKIGCDKVTSETELS 263 (310)
Q Consensus 186 ~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l--~~~g~~~~sa~~~~g 263 (310)
+.+|++++|+|+++..+++.+..|..++..+. .+.|+++|+||+|+.......+.. ... ..+.+.++||+++.|
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~ 141 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVKDRKVKAKSI-TFHRKKNLQYYDISAKSNYN 141 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCHHHH-HHHHHcCCEEEEEeCCCCCC
Confidence 78999999999999999999988999898764 368999999999986432111111 211 234577799999999
Q ss_pred HHHHHHHHhhccCC
Q 021615 264 SEDAVKSLSTEGGE 277 (310)
Q Consensus 264 i~~l~~~l~~~~~~ 277 (310)
+.++|..++.....
T Consensus 142 v~~~F~~l~~~i~~ 155 (200)
T smart00176 142 FEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999876543
No 171
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.74 E-value=8.9e-18 Score=139.54 Aligned_cols=154 Identities=21% Similarity=0.287 Sum_probs=109.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCce-eeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT-~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
||+++|.+++|||||++++.+..... .+..|. .+.....+..+ ... -.+.+||++|..+.. .+. .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~----~~~--~~l~i~D~~g~~~~~----~~~---~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE-NYIPTIGIDSYSKEVSID----GKP--VNLEIWDTSGQERFD----SLR---D 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS-SSETTSSEEEEEEEEEET----TEE--EEEEEEEETTSGGGH----HHH---H
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc-cccccccccccccccccc----ccc--ccccccccccccccc----ccc---c
Confidence 69999999999999999999875322 222221 22222223222 111 268999999986542 122 2
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcccc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVTS 258 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~sa 258 (310)
..++.+|++++|+|.++..+++.+..|...+..+.+ ...|+++|+||+|+.+.. +....+.+.+. ..+.++|+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa 143 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSA 143 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBT
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEEC
Confidence 345789999999999999999999999999998765 358999999999987622 22334444443 56777999
Q ss_pred CccCCHHHHHHHHhhc
Q 021615 259 ETELSSEDAVKSLSTE 274 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~ 274 (310)
+++.|+.++|..+...
T Consensus 144 ~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 144 KNGENVKEIFQELIRK 159 (162)
T ss_dssp TTTTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999987654
No 172
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.74 E-value=2.4e-17 Score=137.45 Aligned_cols=141 Identities=20% Similarity=0.229 Sum_probs=94.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
+|+++|.+|+|||||+|+|.+.... . ...+.+.+.. ..+|||||+.... ....+.+..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~--------~~~~~v~~~~----------~~~iDtpG~~~~~---~~~~~~~~~ 60 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-A--------RKTQAVEFND----------KGDIDTPGEYFSH---PRWYHALIT 60 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-C--------ccceEEEECC----------CCcccCCccccCC---HHHHHHHHH
Confidence 6999999999999999999976421 0 1112222211 1369999984321 223334445
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC----CCccccC
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG----CDKVTSE 259 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g----~~~~sa~ 259 (310)
.+..+|++++|+|+++..+... .+...+ . .++|+++++||+|+.... .+.+.+.+...+ +..+|++
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~--~~~~~~---~---~~~~ii~v~nK~Dl~~~~--~~~~~~~~~~~~~~~p~~~~Sa~ 130 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLP--AGLLDI---G---VSKRQIAVISKTDMPDAD--VAATRKLLLETGFEEPIFELNSH 130 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccC--HHHHhc---c---CCCCeEEEEEccccCccc--HHHHHHHHHHcCCCCCEEEEECC
Confidence 5789999999999987654322 121121 1 267999999999986532 344555555554 4459999
Q ss_pred ccCCHHHHHHHHhhccC
Q 021615 260 TELSSEDAVKSLSTEGG 276 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~~ 276 (310)
++.|++++|..+++...
T Consensus 131 ~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 131 DPQSVQQLVDYLASLTK 147 (158)
T ss_pred CccCHHHHHHHHHHhch
Confidence 99999999999877663
No 173
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.74 E-value=2.3e-17 Score=141.17 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=102.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|++|+|||||+++|....... .+..|+.......+.... . ...+.+|||||+.+.... . .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~----~--~~~l~i~Dt~g~~~~~~~----~---~ 67 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDG----K--PVQLALWDTAGQEEYERL----R---P 67 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECC----E--EEEEEEEECCCChhcccc----c---h
Confidence 379999999999999999998544221 111122111122222111 1 125789999998655321 1 1
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--------------hHHHHHHHH
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR--------------DRLQSLTEE 247 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--------------~~~~~l~~~ 247 (310)
.++..+|++++|+|.++..+++.+. .|...+.... .+.|+++|+||+|+.... +....+.+.
T Consensus 68 ~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC---PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence 2356899999999999888888775 5777776543 368999999999985421 112223333
Q ss_pred HHhcCCCccccCccCCHHHHHHHHhhcc
Q 021615 248 ILKIGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 248 l~~~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+....+.++||+++.|++++|..++...
T Consensus 145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 145 IGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred hCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 3223567799999999999999998655
No 174
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.73 E-value=4.4e-17 Score=158.89 Aligned_cols=155 Identities=26% Similarity=0.382 Sum_probs=115.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc--ccCCchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG--AHLGKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~--~~~~~~l~~~ 180 (310)
.+|+++|.||+|||||+|+|+|.+..++++|+.|.+...+.+..... .+.++|.||.-.- .+.++.+.+.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--------~i~ivDLPG~YSL~~~S~DE~Var~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--------EIEIVDLPGTYSLTAYSEDEKVARD 75 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--------eEEEEeCCCcCCCCCCCchHHHHHH
Confidence 35999999999999999999999999999999999999999876643 7999999998653 3445666666
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~~~s 257 (310)
|+.. ...|+++.|+|+++.+. ++... -+|.+ .++|+++++|++|.....- ..+.+.+.+ ...+..++
T Consensus 76 ~ll~-~~~D~ivnVvDAtnLeR--nLylt-lQLlE-----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L-GvPVv~tv 145 (653)
T COG0370 76 FLLE-GKPDLIVNVVDATNLER--NLYLT-LQLLE-----LGIPMILALNMIDEAKKRGIRIDIEKLSKLL-GVPVVPTV 145 (653)
T ss_pred HHhc-CCCCEEEEEcccchHHH--HHHHH-HHHHH-----cCCCeEEEeccHhhHHhcCCcccHHHHHHHh-CCCEEEEE
Confidence 6441 46799999999997442 22222 23333 4899999999999865421 123333222 23444589
Q ss_pred cCccCCHHHHHHHHhhcc
Q 021615 258 SETELSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~ 275 (310)
|+.|.|++++........
T Consensus 146 A~~g~G~~~l~~~i~~~~ 163 (653)
T COG0370 146 AKRGEGLEELKRAIIELA 163 (653)
T ss_pred eecCCCHHHHHHHHHHhc
Confidence 999999999998876544
No 175
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.73 E-value=3.5e-17 Score=145.34 Aligned_cols=164 Identities=25% Similarity=0.260 Sum_probs=118.7
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC----
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---- 174 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~---- 174 (310)
.....|+++|.||||||||.|.+.|.+... +..+.||.....+.+..... ++.++||||++......
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eT--------Qlvf~DTPGlvs~~~~r~~~l 141 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGET--------QLVFYDTPGLVSKKMHRRHHL 141 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCce--------EEEEecCCcccccchhhhHHH
Confidence 445679999999999999999999999765 88889999888888865533 89999999998753321
Q ss_pred -chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH------------
Q 021615 175 -KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL------------ 241 (310)
Q Consensus 175 -~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~------------ 241 (310)
..+....+..+..||+++.|+|+++....-. -.++..++.| ...|.++|+||+|.......+
T Consensus 142 ~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y----s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l 216 (379)
T KOG1423|consen 142 MMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY----SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGEL 216 (379)
T ss_pred HHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH----hcCCceeeccchhcchhhhHHhhhHHhcccccc
Confidence 1222344667889999999999996322222 2345667777 478999999999988643211
Q ss_pred ----HHHHHHHHhc----------CC------CccccCccCCHHHHHHHHhhccC
Q 021615 242 ----QSLTEEILKI----------GC------DKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 242 ----~~l~~~l~~~----------g~------~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
.++.+.+... |+ ..+|+..|.|++++-++|...+-
T Consensus 217 ~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 217 AKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred chhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 1222222211 23 23799999999999999987664
No 176
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.72 E-value=1.3e-17 Score=132.98 Aligned_cols=159 Identities=19% Similarity=0.151 Sum_probs=113.7
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 176 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~ 176 (310)
+..+++..|+|.|++|||||+.++..... ...|. ||+ +-.+.+++..+ . ..+++||||+|++.+ ..
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtF-s~sYi-tTiGvDfkirTv~i~G----~--~VkLqIwDtAGqErF----rt 72 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTF-SGSYI-TTIGVDFKIRTVDING----D--RVKLQIWDTAGQERF----RT 72 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhccc-ccceE-EEeeeeEEEEEeecCC----c--EEEEEEeecccHHHH----HH
Confidence 34567788999999999999999987632 22332 232 33344444322 1 237999999999765 22
Q ss_pred HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHH-HHH--hcCC
Q 021615 177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE-EIL--KIGC 253 (310)
Q Consensus 177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~-~l~--~~g~ 253 (310)
..-.+.+..+++++|+|.++.+++.....|+++++...+ ..|-++|+||.|.++......+-.+ ... .+.+
T Consensus 73 ---itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~ 146 (198)
T KOG0079|consen 73 ---ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIEL 146 (198)
T ss_pred ---HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc---cccceecccCCCCccceeeehHHHHHHHHhcCchh
Confidence 223345689999999999999999999999999998664 6788999999999875332222222 223 3456
Q ss_pred CccccCccCCHHHHHHHHhhcc
Q 021615 254 DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.++|+++..+++..|.-+....
T Consensus 147 FETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 147 FETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred eehhhhhcccchHHHHHHHHHH
Confidence 7799999999999998876544
No 177
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=9.8e-18 Score=157.14 Aligned_cols=168 Identities=22% Similarity=0.251 Sum_probs=116.3
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc---C
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH---L 173 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~---~ 173 (310)
.++...+|+++|+||||||||+|+|++.+..+ ++.|+||.+.....++..+. ++.+.||+|+.+... +
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~--------~v~L~DTAGiRe~~~~~iE 335 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGV--------PVRLSDTAGIREESNDGIE 335 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCe--------EEEEEeccccccccCChhH
Confidence 67788999999999999999999999999877 99999999988888775543 899999999988221 2
Q ss_pred CchHHHHHHHHhhhcCEEEEecccCCCCcHHHHH--HHHHHHH----hcCCCCCCCCEEEEEeCCCCCCcHhHHHH-HHH
Q 021615 174 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR--TVKEELR----MYNPDYLERPFIVVLNKIDLPEARDRLQS-LTE 246 (310)
Q Consensus 174 ~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~--~~~~~l~----~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~-l~~ 246 (310)
..++.+++ +.++++|++++|+|+....+.++.. ...+... .+.......|++++.||+|+...-..... ...
T Consensus 336 ~~gI~rA~-k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~ 414 (531)
T KOG1191|consen 336 ALGIERAR-KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV 414 (531)
T ss_pred HHhHHHHH-HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee
Confidence 23455554 5688999999999994433333322 1222211 11122245799999999999865221111 011
Q ss_pred HHH-----hcCCCc-cccCccCCHHHHHHHHhhc
Q 021615 247 EIL-----KIGCDK-VTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 247 ~l~-----~~g~~~-~sa~~~~gi~~l~~~l~~~ 274 (310)
... .+.... +++.+++|++++...+...
T Consensus 415 ~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~ 448 (531)
T KOG1191|consen 415 YPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNI 448 (531)
T ss_pred ccccccCcccceEEEeeechhhhHHHHHHHHHHH
Confidence 111 222222 7999999999999887553
No 178
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.72 E-value=5e-17 Score=161.48 Aligned_cols=148 Identities=25% Similarity=0.389 Sum_probs=104.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC--CchHHHHHHHHhh
Q 021615 109 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRNFLRHLR 186 (310)
Q Consensus 109 G~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~--~~~l~~~~~~~l~ 186 (310)
|.||||||||+|+|++.+..++++|++|.+...+.+..+.. ++.+|||||+.+.... .+.+.+.+.. .+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--------~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~ 71 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--------DIEIVDLPGIYSLTTFSLEEEVARDYLL-NE 71 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--------EEEEEECCCccccCccchHHHHHHHHHh-hc
Confidence 89999999999999999887899999999888877765432 6899999999775432 1222333322 24
Q ss_pred hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCCccccCccCC
Q 021615 187 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVTSETELS 263 (310)
Q Consensus 187 ~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~~~sa~~~~g 263 (310)
.+|++++|+|+++.+. .. .+..++.. .++|+++|+||+|+.+... ..+.+.+.+ ...+.++|++++.|
T Consensus 72 ~aDvvI~VvDat~ler--~l-~l~~ql~~-----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~l-g~pvv~tSA~tg~G 142 (591)
T TIGR00437 72 KPDLVVNVVDASNLER--NL-YLTLQLLE-----LGIPMILALNLVDEAEKKGIRIDEEKLEERL-GVPVVPTSATEGRG 142 (591)
T ss_pred CCCEEEEEecCCcchh--hH-HHHHHHHh-----cCCCEEEEEehhHHHHhCCChhhHHHHHHHc-CCCEEEEECCCCCC
Confidence 7899999999987432 22 22233333 3689999999999864322 122232222 23455689999999
Q ss_pred HHHHHHHHhhc
Q 021615 264 SEDAVKSLSTE 274 (310)
Q Consensus 264 i~~l~~~l~~~ 274 (310)
++++++.+...
T Consensus 143 i~eL~~~i~~~ 153 (591)
T TIGR00437 143 IERLKDAIRKA 153 (591)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 179
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.72 E-value=1.1e-16 Score=158.39 Aligned_cols=152 Identities=20% Similarity=0.200 Sum_probs=106.4
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
.+.+.|+++|.+|+|||||+++|.+.+......+++|.+.....+.... ...+++|||||+.++..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-------~~~i~~iDTPGhe~F~~------- 150 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED-------GKMITFLDTPGHEAFTS------- 150 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC-------CcEEEEEECCCCcchhh-------
Confidence 3457899999999999999999998775555566677655444443321 11689999999976532
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc--------
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------- 251 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-------- 251 (310)
.+.+.+..+|++++|+|+.+....+..+.+ ..+.. .+.|+++++||+|+.+.. .+.+...+...
T Consensus 151 ~r~rga~~aDiaILVVda~dgv~~qT~e~i-~~~~~-----~~vPiIVviNKiDl~~~~--~e~v~~~L~~~g~~~~~~~ 222 (587)
T TIGR00487 151 MRARGAKVTDIVVLVVAADDGVMPQTIEAI-SHAKA-----ANVPIIVAINKIDKPEAN--PDRVKQELSEYGLVPEDWG 222 (587)
T ss_pred HHHhhhccCCEEEEEEECCCCCCHhHHHHH-HHHHH-----cCCCEEEEEECcccccCC--HHHHHHHHHHhhhhHHhcC
Confidence 233556789999999999876555554444 23332 378999999999997532 12222333222
Q ss_pred ---CCCccccCccCCHHHHHHHHhh
Q 021615 252 ---GCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 252 ---g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
.+.++||+++.|+.++++.+..
T Consensus 223 ~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 223 GDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CCceEEEEECCCCCChHHHHHhhhh
Confidence 2556999999999999998754
No 180
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.72 E-value=1.5e-17 Score=143.91 Aligned_cols=159 Identities=31% Similarity=0.444 Sum_probs=121.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
++|+++|+|.+|||||+..+++.+...+.|.|||+....|.+++... .+++.|.||+++++++++|.+++..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--------~IQllDLPGIieGAsqgkGRGRQvi 134 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--------NIQLLDLPGIIEGASQGKGRGRQVI 134 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--------eEEEecCcccccccccCCCCCceEE
Confidence 67999999999999999999999999999999999999999988764 7999999999999999999999988
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHH--------------------------------------------HhcCC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEEL--------------------------------------------RMYNP 218 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l--------------------------------------------~~~~~ 218 (310)
...+.||++++|+|++..+... +.+..|| ++|.-
T Consensus 135 avArtaDlilMvLDatk~e~qr--~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI 212 (364)
T KOG1486|consen 135 AVARTADLILMVLDATKSEDQR--EILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKI 212 (364)
T ss_pred EEeecccEEEEEecCCcchhHH--HHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHee
Confidence 8888999999999998642211 1222232 22210
Q ss_pred ----------------------CCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHHHhhcc
Q 021615 219 ----------------------DYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 219 ----------------------~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+..-.+++.|.||+|...-+ ++.+..+.-.-..+|+....++..+++.+=..+
T Consensus 213 ~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~e----evdrlAr~PnsvViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 213 HNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIE----EVDRLARQPNSVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred ccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecHH----HHHHHhcCCCcEEEEeccccCHHHHHHHHHHHh
Confidence 00124788899999987643 232222334455689999999998888764433
No 181
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.71 E-value=1.3e-16 Score=137.18 Aligned_cols=144 Identities=19% Similarity=0.244 Sum_probs=90.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CC---------------CCCceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI-AD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 165 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~---------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP 165 (310)
+.+|+++|.+|+|||||+++|++..... .. ..++|.......+... ...+.+||||
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~--------~~~~~l~Dtp 73 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK--------DTKINIVDTP 73 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC--------CEEEEEEECC
Confidence 4579999999999999999999632111 11 1223333333333322 1278999999
Q ss_pred CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHH
Q 021615 166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQS 243 (310)
Q Consensus 166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~ 243 (310)
|+.++. .....+++.+|++++|+|+++... .....++..+.. .+.|+++|+||+|+.... ...++
T Consensus 74 G~~~~~-------~~~~~~~~~~d~~ilV~d~~~~~~-~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~ 140 (194)
T cd01891 74 GHADFG-------GEVERVLSMVDGVLLLVDASEGPM-PQTRFVLKKALE-----LGLKPIVVINKIDRPDARPEEVVDE 140 (194)
T ss_pred CcHHHH-------HHHHHHHHhcCEEEEEEECCCCcc-HHHHHHHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHH
Confidence 996642 234456789999999999987432 233334444433 368999999999996432 22344
Q ss_pred HHHHHHh---------cCCCccccCccCCHHH
Q 021615 244 LTEEILK---------IGCDKVTSETELSSED 266 (310)
Q Consensus 244 l~~~l~~---------~g~~~~sa~~~~gi~~ 266 (310)
+.+.+.. ..+..+|+++|.|+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 141 VFDLFIELGATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred HHHHHHHhCCccccCccCEEEeehhccccccc
Confidence 4444422 2234479898877643
No 182
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.71 E-value=6.1e-17 Score=150.49 Aligned_cols=116 Identities=35% Similarity=0.625 Sum_probs=96.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCC--------C-CCccCCCceEEEeCCCCCcccc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPT--------L-GAEKYSSEATLADLPGLIEGAH 172 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~--------~-~~~~~~~~~~i~DtPG~~~~~~ 172 (310)
.+++|||.||+|||||+|+|++..+ .+++|||||..|+.+.+..... . +.......+.++|+||++++++
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 5799999999999999999999998 8899999999999999875431 0 0000113689999999999999
Q ss_pred CCchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHHHhcCC
Q 021615 173 LGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNP 218 (310)
Q Consensus 173 ~~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l~~~~~ 218 (310)
.+.+++..|+.+++.||++++|+|+.. .++..++..+..||..++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~ 138 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADE 138 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999864 2577888888888776643
No 183
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.71 E-value=4.7e-17 Score=131.87 Aligned_cols=156 Identities=20% Similarity=0.214 Sum_probs=111.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceE------eeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR------LDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 175 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~------v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~ 175 (310)
-+++.++|.+-+|||||+..++..+..--. +|+.|. ++..+ + +..++++|||+|++++ +
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaels------dptvgvdffarlie~~p---g--~riklqlwdtagqerf----r 72 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELS------DPTVGVDFFARLIELRP---G--YRIKLQLWDTAGQERF----R 72 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccC------CCccchHHHHHHHhcCC---C--cEEEEEEeeccchHHH----H
Confidence 356889999999999999999987632211 333332 12221 1 2238999999999877 3
Q ss_pred hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-h--cC
Q 021615 176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-K--IG 252 (310)
Q Consensus 176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-~--~g 252 (310)
++.+ ++.+++-++++|+|+++..++++.+.|.+|...+-......-+.+|+.|+|+....+.-.+-.+.+. . +.
T Consensus 73 sitk---syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~ 149 (213)
T KOG0091|consen 73 SITK---SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA 149 (213)
T ss_pred HHHH---HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCce
Confidence 3443 4556888999999999999999999999998876543334457889999999865443223333333 3 44
Q ss_pred CCccccCccCCHHHHHHHHhhcc
Q 021615 253 CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+.++|++++.++++.|..|+.+.
T Consensus 150 FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 150 FVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred EEEecccCCCcHHHHHHHHHHHH
Confidence 66799999999999999887643
No 184
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.71 E-value=1e-16 Score=139.57 Aligned_cols=144 Identities=19% Similarity=0.149 Sum_probs=92.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCC-------------------------------CCCCceeeccceEeeCCCCCCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTLGA 152 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~-------------------------------~~~~tT~~~~~~~v~~~~~~~~ 152 (310)
+|+++|.+|+|||||+++|+.....+. ...++|++.....+...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----- 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----- 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-----
Confidence 589999999999999999986543221 11455665555544432
Q ss_pred ccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 021615 153 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 232 (310)
Q Consensus 153 ~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~ 232 (310)
+.++.++||||+.++ .......+..+|++++|+|++.+...+... ....+... ...++++|+||+
T Consensus 76 ---~~~~~liDTpG~~~~-------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~~~~~~~~----~~~~iIvviNK~ 140 (208)
T cd04166 76 ---KRKFIIADTPGHEQY-------TRNMVTGASTADLAILLVDARKGVLEQTRR-HSYILSLL----GIRHVVVAVNKM 140 (208)
T ss_pred ---CceEEEEECCcHHHH-------HHHHHHhhhhCCEEEEEEECCCCccHhHHH-HHHHHHHc----CCCcEEEEEEch
Confidence 237899999998543 233455678999999999998754333322 22333332 124578899999
Q ss_pred CCCCc-Hh----HHHHHHHHHHhcC-----CCccccCccCCHHHH
Q 021615 233 DLPEA-RD----RLQSLTEEILKIG-----CDKVTSETELSSEDA 267 (310)
Q Consensus 233 Dl~~~-~~----~~~~l~~~l~~~g-----~~~~sa~~~~gi~~l 267 (310)
|+... .+ ...++.+.+..++ +..+||+++.|+.+.
T Consensus 141 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 141 DLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 99753 22 1234444445555 345899999998754
No 185
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.71 E-value=2.8e-17 Score=139.38 Aligned_cols=153 Identities=19% Similarity=0.265 Sum_probs=103.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.-.+|+++|+.|||||||+++|....... ..+|...+...+.... ..+.+||.+|..... ..
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~~~--------~~~~~~d~gG~~~~~-------~~ 74 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKYKG--------YSLTIWDLGGQESFR-------PL 74 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEETT--------EEEEEEEESSSGGGG-------GG
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc---cCcccccccceeeeCc--------EEEEEEecccccccc-------cc
Confidence 34679999999999999999998654111 1223333334444332 279999999985432 23
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--hcC------
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL--KIG------ 252 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~~g------ 252 (310)
|..++..+|+++||+|+++..........+.++-. .....+.|+++++||+|+.+... .+++...+. .+.
T Consensus 75 w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~-~~~~~~~piLIl~NK~D~~~~~~-~~~i~~~l~l~~l~~~~~~~ 152 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPERLQEAKEELKELLN-DPELKDIPILILANKQDLPDAMS-EEEIKEYLGLEKLKNKRPWS 152 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHT-SGGGTTSEEEEEEESTTSTTSST-HHHHHHHTTGGGTTSSSCEE
T ss_pred ceeeccccceeEEEEecccceeecccccchhhhcc-hhhcccceEEEEeccccccCcch-hhHHHhhhhhhhcccCCceE
Confidence 44566789999999999987665555444444433 22335799999999999987533 344544443 222
Q ss_pred CCccccCccCCHHHHHHHHhh
Q 021615 253 CDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~ 273 (310)
+..+|+.+|+|+.+.+++|..
T Consensus 153 v~~~sa~~g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 153 VFSCSAKTGEGVDEGLEWLIE 173 (175)
T ss_dssp EEEEBTTTTBTHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHh
Confidence 334899999999999999865
No 186
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.9e-16 Score=126.18 Aligned_cols=163 Identities=12% Similarity=0.070 Sum_probs=115.7
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
.....+|+.++|.+.+|||||+.+..+....++-+....++-...++.... . ..++++|||+|++..
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~----k--RiklQiwDTagqEry------- 83 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSD----K--RIKLQIWDTAGQERY------- 83 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecc----c--EEEEEEEecccchhh-------
Confidence 445566999999999999999999998764332211111121222222111 1 127899999999764
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhcCC--C
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIGC--D 254 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~g~--~ 254 (310)
....-.+++.++++++++|+++.+++...+.|...++.|.. .+.|+|+|+||||+.++... .+.-.....++|+ .
T Consensus 84 rtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw--~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefF 161 (193)
T KOG0093|consen 84 RTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW--DNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFF 161 (193)
T ss_pred hHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeec--cCceEEEEecccCCccceeeeHHHHHHHHHHhChHHh
Confidence 22233456799999999999999999999999999998865 57899999999999875321 2333344445554 4
Q ss_pred ccccCccCCHHHHHHHHhhcc
Q 021615 255 KVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+.|++...+++++|..|....
T Consensus 162 EtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 162 ETSAKENINVKQVFERLVDII 182 (193)
T ss_pred hhcccccccHHHHHHHHHHHH
Confidence 589999999999999876544
No 187
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.70 E-value=2.1e-16 Score=135.36 Aligned_cols=155 Identities=24% Similarity=0.337 Sum_probs=101.7
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC------------------CCCceeeccceEeeCCCCCCCccCCCceEEE
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD------------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 162 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~------------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~ 162 (310)
...+|+++|..++|||||+++|+.....+.. ....|.......+... .-...++++
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~------~~~~~i~~i 75 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKN------ENNRKITLI 75 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBT------ESSEEEEEE
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccc------ccccceeec
Confidence 4567999999999999999999865422211 1122332222223200 012379999
Q ss_pred eCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hH
Q 021615 163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DR 240 (310)
Q Consensus 163 DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~ 240 (310)
||||+.++ .....+.+..+|++++|+|+.++...+..+.+ ..+.. .+.|+++|+||+|+...+ +.
T Consensus 76 DtPG~~~f-------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l-~~~~~-----~~~p~ivvlNK~D~~~~~~~~~ 142 (188)
T PF00009_consen 76 DTPGHEDF-------IKEMIRGLRQADIAILVVDANDGIQPQTEEHL-KILRE-----LGIPIIVVLNKMDLIEKELEEI 142 (188)
T ss_dssp EESSSHHH-------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHH-HHHHH-----TT-SEEEEEETCTSSHHHHHHH
T ss_pred ccccccce-------eecccceecccccceeeeeccccccccccccc-ccccc-----cccceEEeeeeccchhhhHHHH
Confidence 99998553 33556668899999999999987655554433 45555 478999999999998321 22
Q ss_pred HHHHHHHH-HhcC--------CCccccCccCCHHHHHHHHhhc
Q 021615 241 LQSLTEEI-LKIG--------CDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 241 ~~~l~~~l-~~~g--------~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
.+++.+.+ +..+ +..+|+.++.|+.++++.+...
T Consensus 143 ~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 143 IEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp HHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHh
Confidence 33333222 2232 4458999999999999988654
No 188
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.70 E-value=2.8e-16 Score=159.22 Aligned_cols=151 Identities=20% Similarity=0.203 Sum_probs=107.0
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
.+.+.|+++|.+|+|||||+++|.+........++.|.+.....+.... ..++||||||+.++..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--------~~ItfiDTPGhe~F~~------- 352 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--------GKITFLDTPGHEAFTA------- 352 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--------EEEEEEECCCCccchh-------
Confidence 4678999999999999999999998765555566677655544444321 2789999999976632
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------h--
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------K-- 250 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~-- 250 (310)
.+.+.+..+|++++|||+.+....+..+.| ..+.. .+.|+++|+||+|+.... .+.+...+. .
T Consensus 353 m~~rga~~aDiaILVVdAddGv~~qT~e~i-~~a~~-----~~vPiIVviNKiDl~~a~--~e~V~~eL~~~~~~~e~~g 424 (787)
T PRK05306 353 MRARGAQVTDIVVLVVAADDGVMPQTIEAI-NHAKA-----AGVPIIVAINKIDKPGAN--PDRVKQELSEYGLVPEEWG 424 (787)
T ss_pred HHHhhhhhCCEEEEEEECCCCCCHhHHHHH-HHHHh-----cCCcEEEEEECccccccC--HHHHHHHHHHhcccHHHhC
Confidence 334556789999999999886555554444 23333 478999999999997532 112222221 1
Q ss_pred --cCCCccccCccCCHHHHHHHHhh
Q 021615 251 --IGCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 251 --~g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
..+.++||+++.|+.++++.+..
T Consensus 425 ~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 425 GDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred CCceEEEEeCCCCCCchHHHHhhhh
Confidence 23566899999999999998764
No 189
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.69 E-value=2.2e-16 Score=128.07 Aligned_cols=156 Identities=21% Similarity=0.206 Sum_probs=108.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
-.+|.++|..||||||++++|.+..+.. .-.|..-++.++.+... ++++||.-|+. .+...|
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~---i~pt~gf~Iktl~~~~~--------~L~iwDvGGq~-------~lr~~W 77 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDT---ISPTLGFQIKTLEYKGY--------TLNIWDVGGQK-------TLRSYW 77 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccc---cCCccceeeEEEEecce--------EEEEEEcCCcc-------hhHHHH
Confidence 4679999999999999999999886332 11222223333433322 79999999984 445566
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--H---HHHHHHHHHhc--CCC
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--R---LQSLTEEILKI--GCD 254 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~---~~~l~~~l~~~--g~~ 254 (310)
..|++.+|++|||+|.++...+++....+.++-. ...+.+.|+++++||.|+..+-. . .-.+.+.+... .+.
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~-eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~ 156 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQECKQELTELLV-EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLV 156 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHHHHHHHHHHHh-hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEE
Confidence 6778999999999999987766665554455443 45567899999999999985421 1 11222222332 445
Q ss_pred ccccCccCCHHHHHHHHhhccC
Q 021615 255 KVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
.+++.+|+++.+-+.+|+....
T Consensus 157 ~cs~~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 157 KCSAVTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred EEeccccccHHHHHHHHHHHHH
Confidence 5899999999999999877653
No 190
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.5e-16 Score=127.48 Aligned_cols=158 Identities=16% Similarity=0.104 Sum_probs=111.0
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 176 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~ 176 (310)
...++|++++|+.|+|||.|+.++...+.+- +...+......+..+... ..+++||||+|++++ +.
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK--------~vKLQIWDTAGQErF----RS 73 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGK--------TVKLQIWDTAGQERF----RS 73 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCc--------EEEEEEeecccHHHH----HH
Confidence 4567899999999999999999999776332 111111111111111111 127999999999876 33
Q ss_pred HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH-H--hcCC
Q 021615 177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-L--KIGC 253 (310)
Q Consensus 177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l-~--~~g~ 253 (310)
..+ .+.+.+-+.++|+|+++.++++.+..|+...+...+ .++-+++++||.|+..+.+..-.-...+ . .+-+
T Consensus 74 VtR---sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs--~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~f 148 (214)
T KOG0086|consen 74 VTR---SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMF 148 (214)
T ss_pred HHH---HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCC--CcEEEEEeCChhhcChhhhhhHHHHHhhhcccceee
Confidence 344 445688899999999999999999999999887654 4577888999999987654322222222 2 3567
Q ss_pred CccccCccCCHHHHHHHHhh
Q 021615 254 DKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~ 273 (310)
.++|+.+|.++++.|-..+.
T Consensus 149 lETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 149 LETSALTGENVEEAFLKCAR 168 (214)
T ss_pred eeecccccccHHHHHHHHHH
Confidence 78999999999999976554
No 191
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.69 E-value=7.6e-16 Score=133.63 Aligned_cols=160 Identities=18% Similarity=0.153 Sum_probs=96.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCC--C-CCCCCceeeccceEeeCC---------C----------C------CCCccC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPD--I-ADYPFTTLMPNLGRLDGD---------P----------T------LGAEKY 155 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~--i-~~~~~tT~~~~~~~v~~~---------~----------~------~~~~~~ 155 (310)
+|+++|+.++|||||+.+|++.... . .-.-..|.......+... + . .+....
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 6899999999999999999876210 0 001111221111111110 0 0 000001
Q ss_pred CCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCc-HHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615 156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 234 (310)
Q Consensus 156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~-~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 234 (310)
...+.+|||||+.+ +...++..+..+|++++|+|+.++.. .+... .+..+..+ ...|+++|+||+|+
T Consensus 82 ~~~i~~iDtPG~~~-------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~-~l~~~~~~----~~~~iiivvNK~Dl 149 (203)
T cd01888 82 VRHVSFVDCPGHEI-------LMATMLSGAAVMDGALLLIAANEPCPQPQTSE-HLAALEIM----GLKHIIIVQNKIDL 149 (203)
T ss_pred ccEEEEEECCChHH-------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHH-HHHHHHHc----CCCcEEEEEEchhc
Confidence 14789999999743 44566777788999999999987422 22222 22333332 12579999999999
Q ss_pred CCcHh---HHHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhhcc
Q 021615 235 PEARD---RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 235 ~~~~~---~~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
....+ ..+.+.+.+.. ..+..+|++++.|++++++.++..+
T Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 86432 22344444432 2345689999999999999987655
No 192
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.68 E-value=5.5e-16 Score=155.87 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=106.9
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
...+.|+++|.+|+|||||+++|.+........++.|.......+.... ... ...+++|||||+..+ ..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~--~~~--~~kItfiDTPGhe~F-------~~ 310 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEY--KDE--NQKIVFLDTPGHEAF-------SS 310 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEe--cCC--ceEEEEEECCcHHHH-------HH
Confidence 4668999999999999999999998765555555666544433332210 000 137999999998544 33
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh---------
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--------- 250 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--------- 250 (310)
.+.+.+..+|++++|||+.+....+..+.+. .+.. .+.|+++|+||+|+.... .+.+.+.+..
T Consensus 311 mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~-~~k~-----~~iPiIVViNKiDl~~~~--~e~v~~eL~~~~ll~e~~g 382 (742)
T CHL00189 311 MRSRGANVTDIAILIIAADDGVKPQTIEAIN-YIQA-----ANVPIIVAINKIDKANAN--TERIKQQLAKYNLIPEKWG 382 (742)
T ss_pred HHHHHHHHCCEEEEEEECcCCCChhhHHHHH-HHHh-----cCceEEEEEECCCccccC--HHHHHHHHHHhccchHhhC
Confidence 3445678899999999998865555554443 3332 478999999999997542 1222222221
Q ss_pred --cCCCccccCccCCHHHHHHHHhhc
Q 021615 251 --IGCDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 251 --~g~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
..+.++||+++.|+.+++..+...
T Consensus 383 ~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 383 GDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred CCceEEEEECCCCCCHHHHHHhhhhh
Confidence 235568999999999999987654
No 193
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.68 E-value=2.6e-17 Score=132.68 Aligned_cols=163 Identities=19% Similarity=0.185 Sum_probs=112.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
-+||+++|..-+|||||+-+++..+..- ...+|+..... .-.-.+++ ....+.||||+|+.++- .++..+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~--kHlsTlQASF~--~kk~n~ed--~ra~L~IWDTAGQErfH----ALGPIY 82 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNC--KHLSTLQASFQ--NKKVNVED--CRADLHIWDTAGQERFH----ALGPIY 82 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcch--hhHHHHHHHHh--hccccccc--ceeeeeeeeccchHhhh----ccCceE
Confidence 3789999999999999999998765322 11123211110 00001111 12368999999998873 333343
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-HHHHHHHHhc--CCCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKI--GCDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~l~~~l~~~--g~~~~sa 258 (310)
++.++++++|+|+++.++++..+.|..||+.... ....+++|+||+|+..+.... .+.....+.. .+.++||
T Consensus 83 ---YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG--nei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSA 157 (218)
T KOG0088|consen 83 ---YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG--NEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSA 157 (218)
T ss_pred ---EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC--CeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheeccc
Confidence 3589999999999999999999999999997643 346789999999998654321 2222222233 3566999
Q ss_pred CccCCHHHHHHHHhhccCCcc
Q 021615 259 ETELSSEDAVKSLSTEGGEAD 279 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~~~~~ 279 (310)
+...|+.++|..|...+.+..
T Consensus 158 k~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 158 KDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred ccccCHHHHHHHHHHHHHHHh
Confidence 999999999999988776544
No 194
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.67 E-value=1.2e-15 Score=151.73 Aligned_cols=158 Identities=22% Similarity=0.230 Sum_probs=104.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC---------------CCCceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 165 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~---------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP 165 (310)
.+.+|+++|.+++|||||+++|+.....+.. ..+.|.......+.+.. .++.. ..+++||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~-~~g~~--~~l~liDTP 78 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKA-KDGET--YVLNLIDTP 78 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEc-CCCCE--EEEEEEECC
Confidence 3568999999999999999999875322211 11333332222222210 01111 278999999
Q ss_pred CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHH
Q 021615 166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQS 243 (310)
Q Consensus 166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~ 243 (310)
|+.++. ..+.+++..||++++|+|+++....++...|+..+. .+.|+++|+||+|+.... ...++
T Consensus 79 G~~dF~-------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~~~~~~~~e 145 (595)
T TIGR01393 79 GHVDFS-------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPSADPERVKKE 145 (595)
T ss_pred CcHHHH-------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCccCHHHHHHH
Confidence 997652 244566789999999999998777776666654443 367999999999997532 12233
Q ss_pred HHHHHHhcC---CCccccCccCCHHHHHHHHhhcc
Q 021615 244 LTEEILKIG---CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 244 l~~~l~~~g---~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+.+.+. +. +..+||+++.|+.++++.+....
T Consensus 146 l~~~lg-~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 146 IEEVIG-LDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred HHHHhC-CCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 333222 21 35589999999999999987755
No 195
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.67 E-value=1.6e-15 Score=122.96 Aligned_cols=138 Identities=20% Similarity=0.249 Sum_probs=98.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|.+||+++||||||+++|.+.+... . .|.. +.+. =.++||||-- .++..+-+...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~---~-KTq~-----i~~~-----------~~~IDTPGEy---iE~~~~y~aLi 58 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY---K-KTQA-----IEYY-----------DNTIDTPGEY---IENPRFYHALI 58 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc---C-ccce-----eEec-----------ccEEECChhh---eeCHHHHHHHH
Confidence 479999999999999999999876321 1 1211 2111 1459999942 22355555666
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCc---cccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDK---VTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~---~sa~ 259 (310)
.....||++++|.|++++.....-. .... ..+|+|-|+||+|+.......+...+.|...|+.. +|+.
T Consensus 59 ~ta~dad~V~ll~dat~~~~~~pP~----fa~~-----f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~ 129 (143)
T PF10662_consen 59 VTAQDADVVLLLQDATEPRSVFPPG----FASM-----FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAV 129 (143)
T ss_pred HHHhhCCEEEEEecCCCCCccCCch----hhcc-----cCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECC
Confidence 6678999999999999754321111 1111 36899999999999965566788888888877665 8999
Q ss_pred ccCCHHHHHHHHh
Q 021615 260 TELSSEDAVKSLS 272 (310)
Q Consensus 260 ~~~gi~~l~~~l~ 272 (310)
+++|++++.++|.
T Consensus 130 ~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 130 TGEGIEELKDYLE 142 (143)
T ss_pred CCcCHHHHHHHHh
Confidence 9999999999874
No 196
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.67 E-value=1.5e-15 Score=125.70 Aligned_cols=153 Identities=22% Similarity=0.260 Sum_probs=97.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC--CCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC---C---c
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA--KPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL---G---K 175 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~--~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~---~---~ 175 (310)
+|+++|.+|||||||+|.|++. .+..+..+++|......... ..+.+|||||+...... . .
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~~~D~~g~~~~~~~~~~~~~~~ 69 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-----------DKFRLVDLPGYGYAKVSKEVKEKWG 69 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-----------CeEEEecCCCccccccCHHHHHHHH
Confidence 5899999999999999999943 33445666666544332221 16899999998654210 0 1
Q ss_pred hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHHHHH---
Q 021615 176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEIL--- 249 (310)
Q Consensus 176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~~l~--- 249 (310)
.+...+......++++++|+|.......... .+.+.+.. .+.|+++|+||+|+....+. ...+...+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~-----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~ 143 (170)
T cd01876 70 KLIEEYLENRENLKGVVLLIDSRHGPTEIDL-EMLDWLEE-----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFE 143 (170)
T ss_pred HHHHHHHHhChhhhEEEEEEEcCcCCCHhHH-HHHHHHHH-----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhcc
Confidence 1222333333457889999998865433322 23344544 25899999999999654321 122222332
Q ss_pred -hcCCCccccCccCCHHHHHHHHhh
Q 021615 250 -KIGCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 250 -~~g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
...+..+|++++.|+.++++.+.+
T Consensus 144 ~~~~~~~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 144 IDPPIILFSSLKGQGIDELRALIEK 168 (170)
T ss_pred CCCceEEEecCCCCCHHHHHHHHHH
Confidence 224446899999999999998865
No 197
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.66 E-value=8.9e-17 Score=150.68 Aligned_cols=163 Identities=23% Similarity=0.309 Sum_probs=120.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH-
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR- 179 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~- 179 (310)
..++++|+|+||+|||||+|.++.+++.+.+|+|||.....|.+++.-. +++++||||+.+...+.....+
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYl--------rwQViDTPGILD~plEdrN~IEm 238 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYL--------RWQVIDTPGILDRPEEDRNIIEM 238 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhee--------eeeecCCccccCcchhhhhHHHH
Confidence 3457899999999999999999999999999999999888888766532 7999999999887655443222
Q ss_pred ---HHHHHhhhcCEEEEecccCC--CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhc
Q 021615 180 ---NFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKI 251 (310)
Q Consensus 180 ---~~~~~l~~~d~il~VvD~s~--~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~ 251 (310)
..+.|++. +++|+.|.|. +.+.++--.+++.++- -+.++|+|+|+||+|+...++ .-+++.+.+..-
T Consensus 239 qsITALAHLra--aVLYfmDLSe~CGySva~QvkLfhsIKp---LFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~ 313 (620)
T KOG1490|consen 239 QIITALAHLRS--AVLYFMDLSEMCGYSVAAQVKLYHSIKP---LFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDD 313 (620)
T ss_pred HHHHHHHHhhh--hheeeeechhhhCCCHHHHHHHHHHhHH---HhcCCceEEEeecccccCccccCHHHHHHHHHHHhc
Confidence 23566665 6899999986 4444444445555553 336899999999999976432 233455555544
Q ss_pred C---CCccccCccCCHHHHHHHHhhccC
Q 021615 252 G---CDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 252 g---~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+ +...|+.+.+|+.++-...|..+.
T Consensus 314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 314 GNVKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred cCceEEEecccchhceeeHHHHHHHHHH
Confidence 4 456899999999998876665443
No 198
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.66 E-value=1.4e-15 Score=132.98 Aligned_cols=158 Identities=14% Similarity=0.085 Sum_probs=103.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|++|||||||++++....... .+ .+|............ .... ..+.+|||||..+... + ..
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~~-~~-~~t~~~~~~~~~~~~--~~~~--i~i~~~Dt~g~~~~~~----~---~~ 76 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFEK-KY-IPTLGVEVHPLKFYT--NCGP--ICFNVWDTAGQEKFGG----L---RD 76 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCC-CC-CCccceEEEEEEEEE--CCeE--EEEEEEECCCchhhhh----h---hH
Confidence 689999999999999998766443211 11 223222222221110 0111 2789999999865421 1 22
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccCc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET 260 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~~ 260 (310)
.++..++++++|+|.++..++.....|...+.... .+.|+++|+||+|+.......+ ....... +.+.++|+++
T Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~e~Sa~~ 152 (215)
T PTZ00132 77 GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVKDRQVKAR-QITFHRKKNLQYYDISAKS 152 (215)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCccccCCHH-HHHHHHHcCCEEEEEeCCC
Confidence 34557899999999999888888888888877553 3689999999999864321111 1222232 3456799999
Q ss_pred cCCHHHHHHHHhhccCC
Q 021615 261 ELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 261 ~~gi~~l~~~l~~~~~~ 277 (310)
+.|+++.|..++..+..
T Consensus 153 ~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 153 NYNFEKPFLWLARRLTN 169 (215)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999998876543
No 199
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.66 E-value=9e-16 Score=123.62 Aligned_cols=152 Identities=20% Similarity=0.164 Sum_probs=96.5
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhh
Q 021615 107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 186 (310)
Q Consensus 107 lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~ 186 (310)
++|++|+|||||+++|++..........|............. ....+.+||+||+.+... .....+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~~~-------~~~~~~~ 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDG------KKVKLQIWDTAGQERFRS-------LRRLYYR 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECC------EEEEEEEEecCChHHHHh-------HHHHHhc
Confidence 589999999999999998765222222222222222222110 012789999999865422 2234567
Q ss_pred hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHH----HHHHHHhcCCCccccCccC
Q 021615 187 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS----LTEEILKIGCDKVTSETEL 262 (310)
Q Consensus 187 ~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~----l~~~l~~~g~~~~sa~~~~ 262 (310)
.+|++++|+|++.+........+...... .....+.|+++|+||+|+......... .........+..+|+..+.
T Consensus 68 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 146 (157)
T cd00882 68 GADGIILVYDVTDRESFENVKEWLLLILI-NKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGE 146 (157)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHH-hhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCC
Confidence 89999999999987766666554211111 112247999999999999765432222 1122223456668999999
Q ss_pred CHHHHHHHHh
Q 021615 263 SSEDAVKSLS 272 (310)
Q Consensus 263 gi~~l~~~l~ 272 (310)
|+.+++..+.
T Consensus 147 ~i~~~~~~l~ 156 (157)
T cd00882 147 NVEELFEELA 156 (157)
T ss_pred ChHHHHHHHh
Confidence 9999998864
No 200
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.65 E-value=3.7e-16 Score=139.72 Aligned_cols=162 Identities=29% Similarity=0.239 Sum_probs=120.7
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 175 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~ 175 (310)
.++-...+.|++||++|+|||||+++|+++.....+..|.|++|+.-...... +..+.+.||-||+.. ++.
T Consensus 172 gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-------g~~vlltDTvGFisd--LP~ 242 (410)
T KOG0410|consen 172 GREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-------GNFVLLTDTVGFISD--LPI 242 (410)
T ss_pred ccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-------CcEEEEeechhhhhh--CcH
Confidence 34556778999999999999999999997776668899999998765544221 136899999999875 345
Q ss_pred hHHHHH---HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh
Q 021615 176 GLGRNF---LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARDRLQSLTEEILK 250 (310)
Q Consensus 176 ~l~~~~---~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~ 250 (310)
.+..+| +.++..+|++++|+|++.|...++.+.+...|...+- ...-..++-|-||+|........ +.
T Consensus 243 ~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-------E~ 315 (410)
T KOG0410|consen 243 QLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-------EK 315 (410)
T ss_pred HHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-------cc
Confidence 666555 5667889999999999999988888888888876532 00112366788999986542110 22
Q ss_pred cCCCccccCccCCHHHHHHHHhh
Q 021615 251 IGCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 251 ~g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
.+...+|+.+|+|++++...+-.
T Consensus 316 n~~v~isaltgdgl~el~~a~~~ 338 (410)
T KOG0410|consen 316 NLDVGISALTGDGLEELLKAEET 338 (410)
T ss_pred CCccccccccCccHHHHHHHHHH
Confidence 34566899999999999987644
No 201
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.65 E-value=4.7e-15 Score=127.85 Aligned_cols=141 Identities=21% Similarity=0.223 Sum_probs=92.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC----------------CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 166 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i----------------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG 166 (310)
.+|+++|.+++|||||+++|+...... ....++|.......+... +..+.++||||
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------~~~i~~iDtPG 74 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--------NRHYAHVDCPG 74 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC--------CeEEEEEECcC
Confidence 469999999999999999998641100 113445554433333222 23789999999
Q ss_pred CCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHH----
Q 021615 167 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL---- 241 (310)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~---- 241 (310)
+.+ +.......+..+|++++|+|+......++.+ ++..+.. .++| +++|+||+|+....+..
T Consensus 75 ~~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~-~~~~~~~-----~~~~~iIvviNK~D~~~~~~~~~~~~ 141 (195)
T cd01884 75 HAD-------YIKNMITGAAQMDGAILVVSATDGPMPQTRE-HLLLARQ-----VGVPYIVVFLNKADMVDDEELLELVE 141 (195)
T ss_pred HHH-------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCcEEEEEeCCCCCCcHHHHHHHH
Confidence 854 3344566678899999999998755444433 3445554 3566 77899999997543322
Q ss_pred HHHHHHHHhcCC-------CccccCccCCH
Q 021615 242 QSLTEEILKIGC-------DKVTSETELSS 264 (310)
Q Consensus 242 ~~l~~~l~~~g~-------~~~sa~~~~gi 264 (310)
+++.+.+..+++ .++|+.+|.+.
T Consensus 142 ~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 142 MEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 345555555554 34788888874
No 202
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.65 E-value=3.1e-15 Score=129.60 Aligned_cols=124 Identities=16% Similarity=0.065 Sum_probs=84.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeec--cceEeeCCCC-CCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP--NLGRLDGDPT-LGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~--~~~~v~~~~~-~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
.||+++|.++||||||++++++...... + ..|... ....+.+... .....+ .+.+|||+|..++ ..+.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~-~-~~Tig~~~~~k~~~~~~~~~~~~~~--~l~IwDtaG~e~~----~~l~- 71 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGR-P-SWTVGCSVDVKHHTYKEGTPEEKTF--FVELWDVGGSESV----KSTR- 71 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC-C-CcceeeeEEEEEEEEcCCCCCCcEE--EEEEEecCCchhH----HHHH-
Confidence 3799999999999999999998753322 1 222221 1112222110 011122 6899999999665 2222
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC-----------------CCCCCCEEEEEeCCCCCCc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-----------------DYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~-----------------~~~~~p~ivv~NK~Dl~~~ 237 (310)
..+++.+|++++|+|.++..+++.+..|..++..... ...+.|+++|+||+|+.+.
T Consensus 72 --~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 72 --AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred --HHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 2345689999999999999999999999998875321 1135899999999999754
No 203
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.64 E-value=3.4e-15 Score=148.21 Aligned_cols=151 Identities=19% Similarity=0.111 Sum_probs=102.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.|+++|.+|+|||||+++|++..... ...+++|.+.....+.... ..+.+|||||+.++ ...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--------~~v~~iDtPGhe~f-------~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--------YRLGFIDVPGHEKF-------ISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--------EEEEEEECCCHHHH-------HHH
Confidence 58999999999999999999854211 2234566655444444322 27899999998543 345
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHh---HHHHHHHHHHhc-----
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARD---RLQSLTEEILKI----- 251 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~---~~~~l~~~l~~~----- 251 (310)
+...+..+|++++|+|++++...+..+.+ ..+.. .+.| +++|+||+|+.+... ..+++.+.+...
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl-~il~~-----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~ 140 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHL-AVLDL-----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKN 140 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 56667889999999999985444444333 23333 3577 999999999986432 123344444433
Q ss_pred -CCCccccCccCCHHHHHHHHhhcc
Q 021615 252 -GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 252 -g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+.++|++++.|+.+++..+....
T Consensus 141 ~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 141 AKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred CcEEEEeCCCCCCchhHHHHHHHHH
Confidence 344589999999999998875543
No 204
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.64 E-value=2.2e-16 Score=124.65 Aligned_cols=115 Identities=18% Similarity=0.205 Sum_probs=74.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCC---C-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPD---I-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~---i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
||+|+|.+|||||||+++|.+.... . ......+.......+.... ..+.+||++|..+......
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~d~~g~~~~~~~~~---- 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDR--------QSLQFWDFGGQEEFYSQHQ---- 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEE--------EEEEEEEESSSHCHHCTSH----
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCc--------eEEEEEecCccceeccccc----
Confidence 6999999999999999999988754 1 2222223222222222211 1478999999966533211
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 233 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 233 (310)
..+..+|++++|+|.+++.+++.+..+...+........+.|+++|+||.|
T Consensus 69 ---~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 ---FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ---HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ---chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 126689999999999998877776555444443321123599999999998
No 205
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.64 E-value=6e-16 Score=123.35 Aligned_cols=158 Identities=25% Similarity=0.333 Sum_probs=108.8
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
.++.-..+.++|..|+|||||+|.+...+. ..+...|...+...+.-.. ..+.+||.||+..+
T Consensus 16 f~k~emel~lvGLq~sGKtt~Vn~ia~g~~--~edmiptvGfnmrk~tkgn--------vtiklwD~gGq~rf------- 78 (186)
T KOG0075|consen 16 FWKEEMELSLVGLQNSGKTTLVNVIARGQY--LEDMIPTVGFNMRKVTKGN--------VTIKLWDLGGQPRF------- 78 (186)
T ss_pred HHHheeeEEEEeeccCCcceEEEEEeeccc--hhhhcccccceeEEeccCc--------eEEEEEecCCCccH-------
Confidence 455667799999999999999999876431 1122334333333332221 16899999999665
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------h
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------K 250 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~ 250 (310)
...|.++.+.+++++||+|+++++..+..+.-++.| .+.+.+.++|+++++||.|+.++-.. ..+.+++. +
T Consensus 79 rsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~L-L~k~~l~gip~LVLGnK~d~~~AL~~-~~li~rmgL~sitdRE 156 (186)
T KOG0075|consen 79 RSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDL-LDKPSLTGIPLLVLGNKIDLPGALSK-IALIERMGLSSITDRE 156 (186)
T ss_pred HHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHH-hcchhhcCCcEEEecccccCcccccH-HHHHHHhCccccccce
Confidence 346677788999999999999976655433222222 23566778999999999999987543 33333332 2
Q ss_pred cCCCccccCccCCHHHHHHHHhhc
Q 021615 251 IGCDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 251 ~g~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
..+..+|++...+++...++|...
T Consensus 157 vcC~siScke~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 157 VCCFSISCKEKVNIDITLDWLIEH 180 (186)
T ss_pred EEEEEEEEcCCccHHHHHHHHHHH
Confidence 345558999999999999998554
No 206
>PLN00023 GTP-binding protein; Provisional
Probab=99.63 E-value=5.1e-15 Score=135.28 Aligned_cols=127 Identities=18% Similarity=0.130 Sum_probs=85.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeec--cceEeeCCCC-------CCCccCCCceEEEeCCCCCcccc
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP--NLGRLDGDPT-------LGAEKYSSEATLADLPGLIEGAH 172 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~--~~~~v~~~~~-------~~~~~~~~~~~i~DtPG~~~~~~ 172 (310)
..||+++|..|||||||+++|++...... + ..|+.. ....+.++.. .++....-.+.||||+|+..+..
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~~-~-~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSSIAR-P-PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCcccc-c-CCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 36899999999999999999997753221 1 122211 1122222110 00000112689999999976522
Q ss_pred CCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC----------CCCCCCEEEEEeCCCCCCc
Q 021615 173 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP----------DYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 173 ~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~----------~~~~~p~ivv~NK~Dl~~~ 237 (310)
+ ...+++.+|++|+|+|+++..+++.+..|.+++..+.. .....|+++|+||+|+...
T Consensus 99 ----L---~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 99 ----C---RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred ----h---hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 2 22346789999999999999999999999999987531 1124799999999999653
No 207
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.63 E-value=5.8e-15 Score=128.11 Aligned_cols=121 Identities=24% Similarity=0.315 Sum_probs=77.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
++|+++|++|||||||+++|+..+... . .++..++...+..... . ....+.+|||||+.+. ...+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-t--~~s~~~~~~~~~~~~~--~--~~~~~~l~D~pG~~~~-------~~~~~ 66 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS-T--VTSIEPNVATFILNSE--G--KGKKFRLVDVPGHPKL-------RDKLL 66 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC-c--cCcEeecceEEEeecC--C--CCceEEEEECCCCHHH-------HHHHH
Confidence 469999999999999999999875321 1 2222344444332110 0 1237899999998653 34556
Q ss_pred HHhhhc-CEEEEecccCCC-CcHHHHHHHHHH-HHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 183 RHLRRT-RLLVHVIDAAAE-NPVNDYRTVKEE-LRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 183 ~~l~~~-d~il~VvD~s~~-~~~~~~~~~~~~-l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.+++.+ +++|||+|+++. ....+...++.. +........+.|+++|+||+|+..+
T Consensus 67 ~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 67 ETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 667788 999999999986 334333323222 2211111147899999999998764
No 208
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.62 E-value=6.9e-15 Score=126.84 Aligned_cols=162 Identities=17% Similarity=0.103 Sum_probs=101.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCC--CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~--~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
+|+++|.||||||||+|+|++.+..... .+.+|.....+...... ..+.++||||+.+.......+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--------~~i~viDTPG~~d~~~~~~~~~~~i 73 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--------RRVNVIDTPGLFDTSVSPEQLSKEI 73 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--------eEEEEEECcCCCCccCChHHHHHHH
Confidence 6999999999999999999998755422 44566666555444322 3799999999987643222333332
Q ss_pred ----HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-------HHHHHHHHHHh
Q 021615 182 ----LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-------RLQSLTEEILK 250 (310)
Q Consensus 182 ----~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-------~~~~l~~~l~~ 250 (310)
.......|+++||+|+.. ...++ ....+.+.........+++++|+|++|.....+ ....+...+..
T Consensus 74 ~~~~~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~ 151 (196)
T cd01852 74 VRCLSLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK 151 (196)
T ss_pred HHHHHhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH
Confidence 233456899999999887 44444 334455544322222378899999999875321 11344444444
Q ss_pred cCCC--c---c--ccCccCCHHHHHHHHhhcc
Q 021615 251 IGCD--K---V--TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 251 ~g~~--~---~--sa~~~~gi~~l~~~l~~~~ 275 (310)
++-. . . ++..+.++.++++.+....
T Consensus 152 c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 152 CGGRYVAFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred hCCeEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 4311 1 1 3566778888887765544
No 209
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.62 E-value=1.6e-14 Score=142.86 Aligned_cols=122 Identities=23% Similarity=0.175 Sum_probs=77.6
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCC-------CccC---CCceEEEeCCCCCccc
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG-------AEKY---SSEATLADLPGLIEGA 171 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~-------~~~~---~~~~~i~DtPG~~~~~ 171 (310)
.+-|+++|.+|+|||||+|+|++.........++|.+.....+..+.... ...+ ...+.+|||||+..+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 45699999999999999999998864333333344432222222111000 0000 0248999999986552
Q ss_pred cCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 172 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 172 ~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
......++.+|++++|+|+++....++++.+ ..+.. .+.|+++++||+|+..
T Consensus 84 -------~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~~l~~-----~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 84 -------NLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRM-----YKTPFVVAANKIDRIP 135 (590)
T ss_pred -------HHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-HHHHH-----cCCCEEEEEECCCccc
Confidence 2233456789999999999875555554433 23333 3689999999999964
No 210
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.62 E-value=3.9e-15 Score=143.20 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=95.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCCCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTL 150 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~~~ 150 (310)
..+|+++|.+|+|||||+++|+.....+ ...+++|++.....+....
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~-- 83 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK-- 83 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC--
Confidence 3579999999999999999998543222 1145667766655554432
Q ss_pred CCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCC--CCcHHHHHHHHHHHHhcCCCCCCCCEEEE
Q 021615 151 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVV 228 (310)
Q Consensus 151 ~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~--~~~~~~~~~~~~~l~~~~~~~~~~p~ivv 228 (310)
..+.+|||||+.++. ......+..+|++++|+|+++ ....+..+ ....+..+ ...|+++|
T Consensus 84 ------~~i~liDtpG~~~~~-------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~-~~~~~~~~----~~~~iivv 145 (425)
T PRK12317 84 ------YYFTIVDCPGHRDFV-------KNMITGASQADAAVLVVAADDAGGVMPQTRE-HVFLARTL----GINQLIVA 145 (425)
T ss_pred ------eEEEEEECCCcccch-------hhHhhchhcCCEEEEEEEcccCCCCCcchHH-HHHHHHHc----CCCeEEEE
Confidence 279999999986542 223344678999999999987 33222222 22233332 12468999
Q ss_pred EeCCCCCCc-HhH----HHHHHHHHHhcCC-------CccccCccCCHHHHH
Q 021615 229 LNKIDLPEA-RDR----LQSLTEEILKIGC-------DKVTSETELSSEDAV 268 (310)
Q Consensus 229 ~NK~Dl~~~-~~~----~~~l~~~l~~~g~-------~~~sa~~~~gi~~l~ 268 (310)
+||+|+.+. .+. .+++.+.+...++ ..+||+++.|+.++.
T Consensus 146 iNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 146 INKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred EEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 999999752 222 2344444544443 458999999998744
No 211
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.61 E-value=7.7e-15 Score=128.81 Aligned_cols=142 Identities=20% Similarity=0.185 Sum_probs=89.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCCCCCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTLGA 152 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~~~~~ 152 (310)
+|+++|.+++|||||+.+|+.....+ ....++|++.....+....
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~---- 76 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK---- 76 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC----
Confidence 48999999999999999996331111 1123445554444443322
Q ss_pred ccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-------cHHHHHHHHHHHHhcCCCCCCCCE
Q 021615 153 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYLERPF 225 (310)
Q Consensus 153 ~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-------~~~~~~~~~~~l~~~~~~~~~~p~ 225 (310)
.++.+|||||+.++ ...+...+..+|++++|+|+++.. ..+..+.+ ..+..+ ..+|+
T Consensus 77 ----~~i~liDtpG~~~~-------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~i 140 (219)
T cd01883 77 ----YRFTILDAPGHRDF-------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL----GVKQL 140 (219)
T ss_pred ----eEEEEEECCChHHH-------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc----CCCeE
Confidence 37999999998543 234556677899999999998742 11222222 222222 23689
Q ss_pred EEEEeCCCCCCc---HhHH----HHHHHHHHhcC-------CCccccCccCCHH
Q 021615 226 IVVLNKIDLPEA---RDRL----QSLTEEILKIG-------CDKVTSETELSSE 265 (310)
Q Consensus 226 ivv~NK~Dl~~~---~~~~----~~l~~~l~~~g-------~~~~sa~~~~gi~ 265 (310)
++|+||+|+... .... +.+.+.+...+ +..+||++|.|+.
T Consensus 141 iivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 141 IVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 999999999832 2222 33333445544 4458999999987
No 212
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.60 E-value=2.8e-14 Score=142.10 Aligned_cols=159 Identities=23% Similarity=0.248 Sum_probs=104.1
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC---------------CCCceeeccceEeeCCCCCCCccCCCceEEEeC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~---------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~Dt 164 (310)
..+.+|+++|..++|||||+.+|+.....+.. ..+.|.......+.+.. .+... ..+++|||
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~-~dg~~--~~lnLiDT 81 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKA-KDGET--YILNLIDT 81 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEc-cCCCc--EEEEEEEC
Confidence 35678999999999999999999864322110 12333333333332210 01111 27899999
Q ss_pred CCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--HHH
Q 021615 165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQ 242 (310)
Q Consensus 165 PG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~ 242 (310)
||+.++. ..+.+++..||++++|+|+++....++...|..... .+.|+++|+||+|+..... ..+
T Consensus 82 PGh~dF~-------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~------~~lpiIvViNKiDl~~a~~~~v~~ 148 (600)
T PRK05433 82 PGHVDFS-------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NDLEIIPVLNKIDLPAADPERVKQ 148 (600)
T ss_pred CCcHHHH-------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEEEECCCCCcccHHHHHH
Confidence 9997752 345566789999999999998766666555543322 3689999999999975421 122
Q ss_pred HHHHHHHhcC---CCccccCccCCHHHHHHHHhhcc
Q 021615 243 SLTEEILKIG---CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 243 ~l~~~l~~~g---~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
++.+.+. +. +..+||+++.|+.++++.+....
T Consensus 149 ei~~~lg-~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 149 EIEDVIG-IDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred HHHHHhC-CCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 3332221 11 34689999999999999987655
No 213
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.60 E-value=8.2e-15 Score=132.47 Aligned_cols=125 Identities=22% Similarity=0.183 Sum_probs=83.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC---C---CC------------CCCCceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKP---D---IA------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 165 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~---~---i~------------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP 165 (310)
+|+++|.+|+|||||+++|+.... . +. ...++|+......+.+.. .++.++|||
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--------~~i~liDTP 72 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--------HRINIIDTP 72 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--------EEEEEEECC
Confidence 489999999999999999974221 1 11 122344444444443322 278999999
Q ss_pred CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHH
Q 021615 166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQS 243 (310)
Q Consensus 166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~ 243 (310)
|+.++ ...+.+.++.+|++++|+|+......++. .++..+.. .++|+++++||+|+.... ...+.
T Consensus 73 G~~df-------~~~~~~~l~~aD~ailVVDa~~g~~~~t~-~~~~~~~~-----~~~p~ivviNK~D~~~a~~~~~~~~ 139 (270)
T cd01886 73 GHVDF-------TIEVERSLRVLDGAVAVFDAVAGVEPQTE-TVWRQADR-----YNVPRIAFVNKMDRTGADFFRVVEQ 139 (270)
T ss_pred CcHHH-------HHHHHHHHHHcCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHH
Confidence 98654 23456778899999999999886544443 34455554 368999999999997532 23455
Q ss_pred HHHHHH
Q 021615 244 LTEEIL 249 (310)
Q Consensus 244 l~~~l~ 249 (310)
+.+.+.
T Consensus 140 l~~~l~ 145 (270)
T cd01886 140 IREKLG 145 (270)
T ss_pred HHHHhC
Confidence 555444
No 214
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=1.7e-14 Score=127.18 Aligned_cols=164 Identities=20% Similarity=0.231 Sum_probs=112.8
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
+...+|.++|.+|+|||||+|+|+..+... +..+.+|..++.....++. +.+++|||||+.++-..+....
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--------~~l~lwDtPG~gdg~~~D~~~r 108 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--------ENLVLWDTPGLGDGKDKDAEHR 108 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--------cceEEecCCCcccchhhhHHHH
Confidence 345578899999999999999999766443 4444444333322223322 2789999999998766556677
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc-------------------Hh
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-------------------RD 239 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~-------------------~~ 239 (310)
..+...+.+.|++++++|+.++...-+...+.+.+..- .++++++++|.+|+... ++
T Consensus 109 ~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~----~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~ 184 (296)
T COG3596 109 QLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG----LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE 184 (296)
T ss_pred HHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc----cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHH
Confidence 77888899999999999999987666666665555432 35899999999998642 11
Q ss_pred HHHHHHHHHHh-cCCCccccCccCCHHHHHHHHhhcc
Q 021615 240 RLQSLTEEILK-IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 240 ~~~~l~~~l~~-~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+.+.+.+.+.. .++...+...+-|++.+...+....
T Consensus 185 k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 185 KAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred HHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence 22233333332 2344456678889999888776544
No 215
>PRK09866 hypothetical protein; Provisional
Probab=99.59 E-value=7.7e-14 Score=136.08 Aligned_cols=113 Identities=22% Similarity=0.308 Sum_probs=76.5
Q ss_pred CceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
..++++||||+..... ..+.....+.+..+|+|+||+|+.......+ ..+.+.+..... ..|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K---~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQ---SVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCC---CCCEEEEEEcccCCC
Confidence 4678999999975421 2355555667899999999999987544444 345566665321 259999999999864
Q ss_pred cHh-HHHHHHH----HHHhc-----CCCccccCccCCHHHHHHHHhhcc
Q 021615 237 ARD-RLQSLTE----EILKI-----GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 237 ~~~-~~~~l~~----~l~~~-----g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
..+ ..+.+.+ .+... .+.++||..+.|++.++..+....
T Consensus 304 reeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 304 RNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred cccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 211 1222222 22221 345589999999999999987644
No 216
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=9e-15 Score=121.51 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=107.0
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.-.+|+++|..||||||++..|--.+.-.. -.|+.-+...+++... +|++||.-|+.+.. ..
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~ykn~--------~f~vWDvGGq~k~R-------~l 77 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEYKNI--------SFTVWDVGGQEKLR-------PL 77 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEEcce--------EEEEEecCCCcccc-------cc
Confidence 346799999999999999999976652211 2344444445555432 89999999996542 24
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cCC
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGC 253 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g~ 253 (310)
|..++..++++|||+|.++.+.....+.-+..+-. .+++...|+++.+||.|++++-. ..++.+.+.- ..+
T Consensus 78 W~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~-~~~l~~~~llv~aNKqD~~~als-~~ei~~~L~l~~l~~~~w~i 155 (181)
T KOG0070|consen 78 WKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLA-EPELRNAPLLVFANKQDLPGALS-AAEITNKLGLHSLRSRNWHI 155 (181)
T ss_pred hhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHc-CcccCCceEEEEechhhccccCC-HHHHHhHhhhhccCCCCcEE
Confidence 56677899999999999987665544322222222 12345799999999999987643 3444444431 124
Q ss_pred CccccCccCCHHHHHHHHhhcc
Q 021615 254 DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
..+.|.+|+|+.+.++++...+
T Consensus 156 q~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 156 QSTCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred eeccccccccHHHHHHHHHHHH
Confidence 4489999999999999987765
No 217
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.58 E-value=1.1e-14 Score=125.43 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=110.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|+|||+|+.++...... ..|..|.-+.+...+..+ +..+ .+.|+||+|+.++.. + -
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~-~~y~ptied~y~k~~~v~----~~~~--~l~ilDt~g~~~~~~----~---~ 68 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV-EDYDPTIEDSYRKELTVD----GEVC--MLEILDTAGQEEFSA----M---R 68 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc-cccCCCccccceEEEEEC----CEEE--EEEEEcCCCcccChH----H---H
Confidence 357999999999999999999877522 223222222222222222 1112 678999999766632 1 2
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVT 257 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~s 257 (310)
..++..+|++++|+++++..+++....+++.+.. .......|+++|+||+|+..... ....+.. ...+.+.++|
T Consensus 69 ~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r-~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~-~~~~~f~E~S 146 (196)
T KOG0395|consen 69 DLYIRNGDGFLLVYSITDRSSFEEAKQLREQILR-VKGRDDVPIILVGNKCDLERERQVSEEEGKALAR-SWGCAFIETS 146 (196)
T ss_pred HHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHH-hhCcCCCCEEEEEEcccchhccccCHHHHHHHHH-hcCCcEEEee
Confidence 2456789999999999999999999999998833 22334589999999999986322 2223322 2244577899
Q ss_pred cCccCCHHHHHHHHhhccCC
Q 021615 258 SETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~~~ 277 (310)
|+...+++++|..|......
T Consensus 147 ak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 147 AKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred ccCCcCHHHHHHHHHHHHHh
Confidence 99999999999998775543
No 218
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.57 E-value=4.5e-14 Score=125.37 Aligned_cols=125 Identities=24% Similarity=0.315 Sum_probs=82.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC---CCC-CC--------------ceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI---ADY-PF--------------TTLMPNLGRLDGDPTLGAEKYSSEATLADLP 165 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i---~~~-~~--------------tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP 165 (310)
+|+++|.+|+|||||+++|+.....+ +.. .. .|.......+... +.++.+||||
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~--------~~~i~liDTP 72 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE--------DTKVNLIDTP 72 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC--------CEEEEEEeCC
Confidence 48999999999999999998653221 100 01 1111122222221 1279999999
Q ss_pred CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc--HhHHHH
Q 021615 166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQS 243 (310)
Q Consensus 166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~ 243 (310)
|+.++. .....+++.+|++++|+|+++....+ .+.+++.+.. .++|+++++||+|+..+ .+..++
T Consensus 73 G~~~f~-------~~~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~-----~~~P~iivvNK~D~~~a~~~~~~~~ 139 (237)
T cd04168 73 GHMDFI-------AEVERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK-----LNIPTIIFVNKIDRAGADLEKVYQE 139 (237)
T ss_pred CccchH-------HHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH-----cCCCEEEEEECccccCCCHHHHHHH
Confidence 997652 23456778899999999999865443 3455566655 36899999999999854 344555
Q ss_pred HHHHHH
Q 021615 244 LTEEIL 249 (310)
Q Consensus 244 l~~~l~ 249 (310)
+.+.+.
T Consensus 140 i~~~~~ 145 (237)
T cd04168 140 IKEKLS 145 (237)
T ss_pred HHHHHC
Confidence 655554
No 219
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.57 E-value=1.9e-14 Score=129.88 Aligned_cols=126 Identities=24% Similarity=0.273 Sum_probs=79.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCC---CC-----CCce-e-------------eccceEeeCCCCCCCccCCCce
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIA---DY-----PFTT-L-------------MPNLGRLDGDPTLGAEKYSSEA 159 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~---~~-----~~tT-~-------------~~~~~~v~~~~~~~~~~~~~~~ 159 (310)
..+|+++|.+|+|||||+++|+.....+. .. ..+| . ......+.+. +.++
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~--------~~~i 73 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR--------DCVI 73 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC--------CEEE
Confidence 35799999999999999999985432211 00 0111 1 1111122221 2379
Q ss_pred EEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-
Q 021615 160 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR- 238 (310)
Q Consensus 160 ~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~- 238 (310)
.+|||||+.++. ......++.+|++++|+|+++....+. +.+++.+.. .++|+++++||+|+..+.
T Consensus 74 ~liDTPG~~df~-------~~~~~~l~~aD~~IlVvda~~g~~~~~-~~i~~~~~~-----~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 74 NLLDTPGHEDFS-------EDTYRTLTAVDSAVMVIDAAKGVEPQT-RKLFEVCRL-----RGIPIITFINKLDREGRDP 140 (267)
T ss_pred EEEECCCchHHH-------HHHHHHHHHCCEEEEEEECCCCccHHH-HHHHHHHHh-----cCCCEEEEEECCccCCCCH
Confidence 999999986542 234566789999999999987544332 344444443 368999999999987653
Q ss_pred -hHHHHHHHHH
Q 021615 239 -DRLQSLTEEI 248 (310)
Q Consensus 239 -~~~~~l~~~l 248 (310)
...+++.+.+
T Consensus 141 ~~~~~~l~~~l 151 (267)
T cd04169 141 LELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHHH
Confidence 2244454444
No 220
>PRK10218 GTP-binding protein; Provisional
Probab=99.57 E-value=5.5e-14 Score=139.56 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=100.9
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-C---------------CCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-A---------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~---------------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D 163 (310)
..+.+|+++|..++|||||+++|+.....+ . ...+.|.......+.+.. .++.+||
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~--------~~inliD 74 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND--------YRINIVD 74 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCC--------EEEEEEE
Confidence 346789999999999999999999643211 1 122334443333443322 2799999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHH
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRL 241 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~ 241 (310)
|||+.++. ..+...++.+|++++|+|+.+....+... ++..+.. .+.|.++|+||+|+..+. +..
T Consensus 75 TPG~~df~-------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~-~l~~a~~-----~gip~IVviNKiD~~~a~~~~vl 141 (607)
T PRK10218 75 TPGHADFG-------GEVERVMSMVDSVLLVVDAFDGPMPQTRF-VTKKAFA-----YGLKPIVVINKVDRPGARPDWVV 141 (607)
T ss_pred CCCcchhH-------HHHHHHHHhCCEEEEEEecccCccHHHHH-HHHHHHH-----cCCCEEEEEECcCCCCCchhHHH
Confidence 99997762 23456678999999999998765444433 3344433 378999999999997542 334
Q ss_pred HHHHHHHHhc---------CCCccccCccC----------CHHHHHHHHhhcc
Q 021615 242 QSLTEEILKI---------GCDKVTSETEL----------SSEDAVKSLSTEG 275 (310)
Q Consensus 242 ~~l~~~l~~~---------g~~~~sa~~~~----------gi~~l~~~l~~~~ 275 (310)
+++.+.+..+ .+..+|+.++. |+..+++.+....
T Consensus 142 ~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 142 DQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred HHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 5555554332 23447888887 4667776655443
No 221
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.57 E-value=1.4e-14 Score=131.10 Aligned_cols=151 Identities=21% Similarity=0.208 Sum_probs=91.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC---CC-CC--------------CceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI---AD-YP--------------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 165 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i---~~-~~--------------~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP 165 (310)
+|+++|.+|+|||||+++|+.....+ +. .. ..|.......+.+.. ..+++||||
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--------~~i~liDtP 72 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--------HKINLIDTP 72 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--------EEEEEEECc
Confidence 48999999999999999997543211 10 01 122222223333221 278999999
Q ss_pred CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHH
Q 021615 166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQS 243 (310)
Q Consensus 166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~ 243 (310)
|+.++ .......+..+|++++|+|++......... +++.+.. .++|.++|+||+|+.... +..+.
T Consensus 73 G~~~f-------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~~~-----~~~p~iivvNK~D~~~~~~~~~~~~ 139 (268)
T cd04170 73 GYADF-------VGETRAALRAADAALVVVSAQSGVEVGTEK-LWEFADE-----AGIPRIIFINKMDRERADFDKTLAA 139 (268)
T ss_pred CHHHH-------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECCccCCCCHHHHHHH
Confidence 98653 234556678999999999999866554433 3344544 368999999999998652 22334
Q ss_pred HHHHHHhcCC-CccccCccCCHHHHHHHHhhcc
Q 021615 244 LTEEILKIGC-DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 244 l~~~l~~~g~-~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+.+.+....+ ..++..++.++..+++.+...+
T Consensus 140 l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~ 172 (268)
T cd04170 140 LQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKA 172 (268)
T ss_pred HHHHhCCCeEEEEecccCCCceeEEEEcccCEE
Confidence 4333321111 1145666666666655554433
No 222
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.56 E-value=7.5e-14 Score=138.65 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=101.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC------C----------CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI------A----------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 166 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i------~----------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG 166 (310)
.+|+++|..++|||||+++|+.....+ . ..-+.|.......+.+.. .++.+|||||
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--------~kinlIDTPG 73 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--------TKINIVDTPG 73 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--------EEEEEEECCC
Confidence 579999999999999999998642211 0 112344444333444332 2799999999
Q ss_pred CCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHHH
Q 021615 167 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQSL 244 (310)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~l 244 (310)
+.++ .....+.+..+|++++|+|+.+....+. ..++..+.. .+.|.++|+||+|+..+. +..+++
T Consensus 74 h~DF-------~~ev~~~l~~aD~alLVVDa~~G~~~qT-~~~l~~a~~-----~~ip~IVviNKiD~~~a~~~~v~~ei 140 (594)
T TIGR01394 74 HADF-------GGEVERVLGMVDGVLLLVDASEGPMPQT-RFVLKKALE-----LGLKPIVVINKIDRPSARPDEVVDEV 140 (594)
T ss_pred HHHH-------HHHHHHHHHhCCEEEEEEeCCCCCcHHH-HHHHHHHHH-----CCCCEEEEEECCCCCCcCHHHHHHHH
Confidence 9665 2344566789999999999987543333 445555554 368999999999997542 334555
Q ss_pred HHHHHhc---------CCCccccCccC----------CHHHHHHHHhhcc
Q 021615 245 TEEILKI---------GCDKVTSETEL----------SSEDAVKSLSTEG 275 (310)
Q Consensus 245 ~~~l~~~---------g~~~~sa~~~~----------gi~~l~~~l~~~~ 275 (310)
.+.+..+ .+..+|++.+. |+..+|+.+....
T Consensus 141 ~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 141 FDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred HHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 5555422 23346888885 7888888876654
No 223
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.56 E-value=1.2e-13 Score=137.14 Aligned_cols=121 Identities=21% Similarity=0.134 Sum_probs=73.6
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC--CC-------ccC-CCceEEEeCCCCCccc
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--GA-------EKY-SSEATLADLPGLIEGA 171 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~--~~-------~~~-~~~~~i~DtPG~~~~~ 171 (310)
.+.|+++|.+|+|||||+++|.+...........|.+.....++..... .. ..+ ...+++|||||+.++.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 3569999999999999999998765332222223322111111111000 00 000 0137999999997652
Q ss_pred cCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 172 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 172 ~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
. ...+.+..+|++++|+|+++....+.++.+ ..+.. .+.|+++++||+|+.
T Consensus 86 ~-------~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~~~~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 86 N-------LRKRGGALADIAILVVDINEGFQPQTIEAI-NILKR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred H-------HHHHhHhhCCEEEEEEECCCCCCHhHHHHH-HHHHH-----cCCCEEEEEECcCCc
Confidence 2 223445689999999999875444444333 23333 378999999999985
No 224
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.56 E-value=8.7e-14 Score=138.80 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=102.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
-|+++|.+++|||||+++|++.+... ....+.|++.....+.... +..+.+|||||+.++ ...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-------g~~i~~IDtPGhe~f-------i~~ 67 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-------GRVLGFIDVPGHEKF-------LSN 67 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-------CcEEEEEECCCHHHH-------HHH
Confidence 48999999999999999999864221 2334666654333332111 125899999998543 344
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHh---HHHHHHHHHHhcC----
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARD---RLQSLTEEILKIG---- 252 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g---- 252 (310)
....+..+|++++|+|+......++.+.+ ..+.. .+.| +++|+||+|+.+... ..+++.+.+...+
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl-~il~~-----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~ 141 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHL-AILQL-----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEA 141 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 55667889999999999876544444433 33443 2456 579999999976422 2334445554443
Q ss_pred -CCccccCccCCHHHHHHHHhhcc
Q 021615 253 -CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 253 -~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+..+|+.++.|++++++.+....
T Consensus 142 ~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 142 KLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhh
Confidence 44589999999999999987543
No 225
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.55 E-value=1e-13 Score=120.96 Aligned_cols=157 Identities=20% Similarity=0.142 Sum_probs=104.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCC-ceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~-tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.+|+++|++|||||||+++|.+........+. .+..+......... .-++.+|||+|+.+. ...+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-------~~~~~~~Dt~gq~~~-------~~~~ 71 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-------NIKLQLWDTAGQEEY-------RSLR 71 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC-------EEEEEeecCCCHHHH-------HHHH
Confidence 78999999999999999999988644322211 11122211111110 115899999999765 2233
Q ss_pred HHHhhhcCEEEEecccCC-CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHH-------------
Q 021615 182 LRHLRRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEE------------- 247 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~-~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~------------- 247 (310)
-.+...++++++|+|... ....+..+.|..++..... ...|+++|+||+|+.........+...
T Consensus 72 ~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (219)
T COG1100 72 PEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPK 149 (219)
T ss_pred HHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhH
Confidence 345578999999999998 5556666778888877543 358999999999998764321111110
Q ss_pred --HH---hcCCCccccC--ccCCHHHHHHHHhhcc
Q 021615 248 --IL---KIGCDKVTSE--TELSSEDAVKSLSTEG 275 (310)
Q Consensus 248 --l~---~~g~~~~sa~--~~~gi~~l~~~l~~~~ 275 (310)
.. ...+..+|++ ++.++.++|..+....
T Consensus 150 ~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 150 AVLPEVANPALLETSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred HhhhhhcccceeEeecccCCCcCHHHHHHHHHHHH
Confidence 00 1225568899 9999999998876655
No 226
>CHL00071 tufA elongation factor Tu
Probab=99.55 E-value=1e-13 Score=132.55 Aligned_cols=140 Identities=20% Similarity=0.197 Sum_probs=91.3
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC----------------CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 165 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i----------------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP 165 (310)
..+|+++|.+|+|||||+++|++....+ ....++|.+.....+... +..+.++|||
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--------~~~~~~iDtP 83 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE--------NRHYAHVDCP 83 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC--------CeEEEEEECC
Confidence 4569999999999999999999752211 112455555443333221 1268999999
Q ss_pred CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHH---
Q 021615 166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL--- 241 (310)
Q Consensus 166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~--- 241 (310)
|+.+ +.....+.+..+|++++|+|+......++.+.+ ..+.. .++| +|+++||+|+.+..+..
T Consensus 84 Gh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~-~~~~~-----~g~~~iIvvvNK~D~~~~~~~~~~~ 150 (409)
T CHL00071 84 GHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHI-LLAKQ-----VGVPNIVVFLNKEDQVDDEELLELV 150 (409)
T ss_pred ChHH-------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCEEEEEEEccCCCCHHHHHHHH
Confidence 9743 334456667889999999999876544443333 44444 3678 77899999998654433
Q ss_pred -HHHHHHHHhcCC-------CccccCccC
Q 021615 242 -QSLTEEILKIGC-------DKVTSETEL 262 (310)
Q Consensus 242 -~~l~~~l~~~g~-------~~~sa~~~~ 262 (310)
+++.+.+..+++ ..+|+.++.
T Consensus 151 ~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 151 ELEVRELLSKYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred HHHHHHHHHHhCCCCCcceEEEcchhhcc
Confidence 345555555543 335766664
No 227
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.54 E-value=6.7e-14 Score=134.66 Aligned_cols=148 Identities=18% Similarity=0.131 Sum_probs=92.6
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPT 149 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~~ 149 (310)
...+|+++|..++|||||+++|+.....+ ....++|++.....+....
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~- 84 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK- 84 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC-
Confidence 34679999999999999999998532111 0122445544444443322
Q ss_pred CCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcH---HHHHHHHHHHHhcCCCCCCCCEE
Q 021615 150 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV---NDYRTVKEELRMYNPDYLERPFI 226 (310)
Q Consensus 150 ~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~---~~~~~~~~~l~~~~~~~~~~p~i 226 (310)
..+.+|||||+.++ ...+...+..+|++++|+|+++.... +..+ ....+..+ ...|++
T Consensus 85 -------~~i~iiDtpGh~~f-------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~-~~~~~~~~----~~~~iI 145 (426)
T TIGR00483 85 -------YEVTIVDCPGHRDF-------IKNMITGASQADAAVLVVAVGDGEFEVQPQTRE-HAFLARTL----GINQLI 145 (426)
T ss_pred -------eEEEEEECCCHHHH-------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHH-HHHHHHHc----CCCeEE
Confidence 27899999998543 33444556789999999999886322 1111 11122221 135789
Q ss_pred EEEeCCCCCCc-HhH----HHHHHHHHHhcC-------CCccccCccCCHHHHH
Q 021615 227 VVLNKIDLPEA-RDR----LQSLTEEILKIG-------CDKVTSETELSSEDAV 268 (310)
Q Consensus 227 vv~NK~Dl~~~-~~~----~~~l~~~l~~~g-------~~~~sa~~~~gi~~l~ 268 (310)
+|+||+|+.+. .+. .+++.+.+...+ +.++||+++.|+.+++
T Consensus 146 VviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 146 VAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred EEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 99999999742 222 234444555444 3458999999998643
No 228
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.54 E-value=1.2e-15 Score=119.72 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=105.1
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhh
Q 021615 107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 186 (310)
Q Consensus 107 lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~ 186 (310)
++|.+++|||.|+-++-.......++. .|. |.-.....+.-.....++++|||+|++++.+ ... .+.+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fi-stv----gid~rnkli~~~~~kvklqiwdtagqerfrs----vt~---ayyr 69 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFI-STV----GIDFRNKLIDMDDKKVKLQIWDTAGQERFRS----VTH---AYYR 69 (192)
T ss_pred ccccCccCceEEEEEeccCceecCcee-eee----eeccccceeccCCcEEEEEEeeccchHHHhh----hhH---hhhc
Confidence 689999999999877764432111111 111 1110000011111123799999999987732 333 4456
Q ss_pred hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCccccCccC
Q 021615 187 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDKVTSETEL 262 (310)
Q Consensus 187 ~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~~sa~~~~ 262 (310)
.+|++++++|+.+..++++.+.|+.++++|.. ..+.+.+++||||+..+.. .-+.+.+. ..+.+.++|+++|-
T Consensus 70 da~allllydiankasfdn~~~wlsei~ey~k--~~v~l~llgnk~d~a~er~v~~ddg~kla~~-y~ipfmetsaktg~ 146 (192)
T KOG0083|consen 70 DADALLLLYDIANKASFDNCQAWLSEIHEYAK--EAVALMLLGNKCDLAHERAVKRDDGEKLAEA-YGIPFMETSAKTGF 146 (192)
T ss_pred ccceeeeeeecccchhHHHHHHHHHHHHHHHH--hhHhHhhhccccccchhhccccchHHHHHHH-HCCCceeccccccc
Confidence 89999999999999999999999999999965 4577889999999965321 22333322 24566679999999
Q ss_pred CHHHHHHHHhhccCC
Q 021615 263 SSEDAVKSLSTEGGE 277 (310)
Q Consensus 263 gi~~l~~~l~~~~~~ 277 (310)
+++-.|-.++.++..
T Consensus 147 nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 147 NVDLAFLAIAEELKK 161 (192)
T ss_pred cHhHHHHHHHHHHHH
Confidence 999999888776543
No 229
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.54 E-value=2.9e-13 Score=119.19 Aligned_cols=103 Identities=22% Similarity=0.077 Sum_probs=69.0
Q ss_pred CceEEEeCCCCCccccCCchHHHHHHHHhh--hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615 157 SEATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 234 (310)
Q Consensus 157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~--~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 234 (310)
..+.++||||+.++ .+.....+. .+|++++|+|+..+....+.+ +...+.. .++|+++|+||+|+
T Consensus 84 ~~i~liDtpG~~~~-------~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~-~l~~l~~-----~~ip~ivvvNK~D~ 150 (224)
T cd04165 84 KLVTFIDLAGHERY-------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKE-HLGLALA-----LNIPVFVVVTKIDL 150 (224)
T ss_pred cEEEEEECCCcHHH-------HHHHHHhhcccCCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCEEEEEECccc
Confidence 36899999998554 223344443 689999999998765544433 4444544 36899999999999
Q ss_pred CCcHh---HHHHHHHHHHhc----------------------------CCCccccCccCCHHHHHHHHh
Q 021615 235 PEARD---RLQSLTEEILKI----------------------------GCDKVTSETELSSEDAVKSLS 272 (310)
Q Consensus 235 ~~~~~---~~~~l~~~l~~~----------------------------g~~~~sa~~~~gi~~l~~~l~ 272 (310)
.+... ..+++.+.+... .+..+|+.+|.|++++..+|.
T Consensus 151 ~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 151 APANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred cCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 75432 233344444321 233369999999999998864
No 230
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.54 E-value=1.8e-13 Score=120.20 Aligned_cols=117 Identities=19% Similarity=0.146 Sum_probs=74.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCC-CC---------------CCceeeccceEeeCCCC----CCCccCCCceEEEe
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIA-DY---------------PFTTLMPNLGRLDGDPT----LGAEKYSSEATLAD 163 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~-~~---------------~~tT~~~~~~~v~~~~~----~~~~~~~~~~~i~D 163 (310)
+|+++|..++|||||+.+|+.....+. .. .+.|.......+.+... .... ...+.+||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~--~~~i~iiD 79 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGN--EYLINLID 79 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCC--ceEEEEEC
Confidence 699999999999999999986532221 00 11122111111111100 0011 22789999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
|||+.++. ......++.+|++++|+|+.++...+....+. .... .+.|+++|+||+|+.
T Consensus 80 TPG~~~f~-------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~-----~~~p~ilviNKiD~~ 138 (222)
T cd01885 80 SPGHVDFS-------SEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALK-----ERVKPVLVINKIDRL 138 (222)
T ss_pred CCCccccH-------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHH-----cCCCEEEEEECCCcc
Confidence 99997753 24456778999999999999876665544333 3332 367999999999986
No 231
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.53 E-value=9.1e-14 Score=132.83 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=97.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEee--------------CCCCCCCc----cCCCceEE
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLD--------------GDPTLGAE----KYSSEATL 161 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~--------------~~~~~~~~----~~~~~~~i 161 (310)
.+|+++|.+++|||||+++|++..... ....+.|......... .....+.. .....+.+
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 84 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF 84 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 469999999999999999998653111 1111223221111100 00000000 01237899
Q ss_pred EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-
Q 021615 162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD- 239 (310)
Q Consensus 162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~- 239 (310)
|||||+.++ ...+...+..+|++++|+|++++. ..+..+.+ ..+... ..+|+++|+||+|+.+...
T Consensus 85 iDtPGh~~f-------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l-~~l~~~----gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 85 VDAPGHETL-------MATMLSGAALMDGALLVIAANEPCPQPQTKEHL-MALEII----GIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred EECCCHHHH-------HHHHHHHHHHCCEEEEEEECCCCccccchHHHH-HHHHHc----CCCeEEEEEEccccCCHHHH
Confidence 999998543 345666677899999999999754 22222222 233332 1357899999999986432
Q ss_pred --HHHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhhcc
Q 021615 240 --RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 240 --~~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
..+++.+.+.. ..+.++|+.++.|++++++.|....
T Consensus 153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 22344444432 2345589999999999999997654
No 232
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.53 E-value=3.2e-14 Score=120.20 Aligned_cols=123 Identities=21% Similarity=0.264 Sum_probs=68.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
..|.|+|++|+|||+|+..|....... ..|...++.... ... .....+.++|+||+.+-. ..+... +
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~---T~tS~e~n~~~~-~~~-----~~~~~~~lvD~PGH~rlr---~~~~~~-~ 70 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP---TVTSMENNIAYN-VNN-----SKGKKLRLVDIPGHPRLR---SKLLDE-L 70 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS------B---SSEEEECC-GSS-----TCGTCECEEEETT-HCCC---HHHHHH-H
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC---eeccccCCceEE-eec-----CCCCEEEEEECCCcHHHH---HHHHHh-h
Confidence 469999999999999999999874211 122333333221 100 112379999999996642 112111 1
Q ss_pred HHhhhcCEEEEecccCCC--CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615 183 RHLRRTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR 238 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~--~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~ 238 (310)
.++..+.+||||+|++.. ...+..+.++..|..-.......|+++++||.|+..+.
T Consensus 71 ~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 71 KYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred hchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 247889999999998741 11223344444443222123468999999999998753
No 233
>PRK12736 elongation factor Tu; Reviewed
Probab=99.53 E-value=1.9e-13 Score=130.08 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=99.0
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC----------------CCCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i----------------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D 163 (310)
|.-.+|+++|.+++|||||+++|++..... ....++|.+.....+... ...+.++|
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~--------~~~i~~iD 81 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE--------KRHYAHVD 81 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC--------CcEEEEEE
Confidence 345679999999999999999998632110 113445554432222211 23789999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHH-
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL- 241 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~- 241 (310)
|||+.++ .......+..+|++++|+|+......++.+.+ ..+.. .++| +++++||+|+.+.++..
T Consensus 82 tPGh~~f-------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~-~~~~~-----~g~~~~IvviNK~D~~~~~~~~~ 148 (394)
T PRK12736 82 CPGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLARQ-----VGVPYLVVFLNKVDLVDDEELLE 148 (394)
T ss_pred CCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHH-HHHHH-----cCCCEEEEEEEecCCcchHHHHH
Confidence 9998543 33445666789999999999875444444433 34443 3677 67899999998543332
Q ss_pred ---HHHHHHHHhcCC-------CccccCccC--------CHHHHHHHHhhcc
Q 021615 242 ---QSLTEEILKIGC-------DKVTSETEL--------SSEDAVKSLSTEG 275 (310)
Q Consensus 242 ---~~l~~~l~~~g~-------~~~sa~~~~--------gi~~l~~~l~~~~ 275 (310)
+++.+.+...++ ..+|+.++. ++..+++.+....
T Consensus 149 ~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 149 LVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 244555555553 447888873 5677777765543
No 234
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.53 E-value=8.5e-14 Score=124.26 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=83.1
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC---
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--- 173 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~--- 173 (310)
++....+|+|+|.+|||||||+|+|++.... ++.+..+|............ .++.++||||+.+....
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--------~~i~vIDTPGl~~~~~~~~~ 98 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--------FKLNIIDTPGLLESVMDQRV 98 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--------eEEEEEECCCcCcchhhHHH
Confidence 5566689999999999999999999998754 36666667655544333221 27899999999876321
Q ss_pred CchHHHHHHHHhh--hcCEEEEecccCCCC-cHHHHHHHHHHHHh-cCCCCCCCCEEEEEeCCCCCCc
Q 021615 174 GKGLGRNFLRHLR--RTRLLVHVIDAAAEN-PVNDYRTVKEELRM-YNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 174 ~~~l~~~~~~~l~--~~d~il~VvD~s~~~-~~~~~~~~~~~l~~-~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.........+++. ..|+++||..++... ...+ ..+.+.+.. +... ...++++|+||+|....
T Consensus 99 ~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~-i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 99 NRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPS-IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChh-hHhCEEEEEeCCccCCC
Confidence 1112222333343 468899987665422 2232 234445544 3322 24689999999998643
No 235
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.1e-14 Score=117.69 Aligned_cols=163 Identities=21% Similarity=0.195 Sum_probs=108.0
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCC-cee----eccceEee-CCCCCCCccCCCceEEEeCCCCCccccC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPF-TTL----MPNLGRLD-GDPTLGAEKYSSEATLADLPGLIEGAHL 173 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~-tT~----~~~~~~v~-~~~~~~~~~~~~~~~i~DtPG~~~~~~~ 173 (310)
..+.+...+|.+|+||||++.+.+..+... .| +|. .+....+. ..+...+......+++|||+|++++
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~---qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF--- 80 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNT---QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF--- 80 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccc---eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHH---
Confidence 345567789999999999999988765211 01 111 11111111 1111122222336899999999887
Q ss_pred CchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHHHHHHH-HHHhc
Q 021615 174 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQSLTE-EILKI 251 (310)
Q Consensus 174 ~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~l~~-~l~~~ 251 (310)
+++.-+|.+ .|=.+++++|.++..++-+...|+..|+.+.. .+.| +++++||+|+.+....-+.-.. ...++
T Consensus 81 -RSLTTAFfR---DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY--cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky 154 (219)
T KOG0081|consen 81 -RSLTTAFFR---DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY--CENPDIVLCGNKADLEDQRVVSEDQAAALADKY 154 (219)
T ss_pred -HHHHHHHHH---hhccceEEEeccchHHHHHHHHHHHHHHHhhc--cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHh
Confidence 455666655 67789999999999999999999999876532 2344 7889999999875443222222 22344
Q ss_pred C--CCccccCccCCHHHHHHHHhhc
Q 021615 252 G--CDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 252 g--~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
| +.++||.++.+++..++.|...
T Consensus 155 glPYfETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 155 GLPYFETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred CCCeeeeccccCcCHHHHHHHHHHH
Confidence 4 5558999999999999887553
No 236
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.52 E-value=2e-13 Score=119.31 Aligned_cols=117 Identities=21% Similarity=0.242 Sum_probs=73.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCC----------C---------CCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIAD----------Y---------PFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~----------~---------~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D 163 (310)
.+|+++|.+++|||||+++|+.....+.. + .+.|.......+.... .... ...+.+||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~-~~~~--~~~i~iiD 77 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPD-SKGK--SYLFNIID 77 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEc-CCCC--EEEEEEEE
Confidence 36999999999999999999875432210 0 1112111111111110 0011 12789999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
|||+.++. ......+..+|++++|+|+++...... ..+...+.. .+.|+++|+||+|+.
T Consensus 78 tpG~~~f~-------~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-----~~~p~iiviNK~D~~ 136 (213)
T cd04167 78 TPGHVNFM-------DEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-----EGLPIVLVINKIDRL 136 (213)
T ss_pred CCCCcchH-------HHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECcccC
Confidence 99997652 234566779999999999987665543 233344432 358999999999985
No 237
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=7.4e-14 Score=110.74 Aligned_cols=157 Identities=20% Similarity=0.177 Sum_probs=107.4
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCce-e--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-L--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 175 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT-~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~ 175 (310)
...++|-.++|.-|+|||.|+..++..+.- ++.|.|- . ...+..+.+. ..+++||||+|+.++ +
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfm-adcphtigvefgtriievsgq--------kiklqiwdtagqerf----r 74 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQ--------KIKLQIWDTAGQERF----R 74 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHh-hcCCcccceecceeEEEecCc--------EEEEEEeecccHHHH----H
Confidence 456788899999999999999999977521 2222211 0 1111122222 127999999999766 2
Q ss_pred hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhcC--
Q 021615 176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKIG-- 252 (310)
Q Consensus 176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~g-- 252 (310)
... .++.+.+-..++|+|+....+..++..|+...+..-. .+..+++++||.|+....+. .++.++..++-|
T Consensus 75 avt---rsyyrgaagalmvyditrrstynhlsswl~dar~ltn--pnt~i~lignkadle~qrdv~yeeak~faeengl~ 149 (215)
T KOG0097|consen 75 AVT---RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLM 149 (215)
T ss_pred HHH---HHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCC--CceEEEEecchhhhhhcccCcHHHHHHHHhhcCeE
Confidence 233 3445688899999999999888888888877665421 34567889999999875442 344444444444
Q ss_pred CCccccCccCCHHHHHHHHhh
Q 021615 253 CDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~ 273 (310)
+.+.|+++|.++++.|-..+.
T Consensus 150 fle~saktg~nvedafle~ak 170 (215)
T KOG0097|consen 150 FLEASAKTGQNVEDAFLETAK 170 (215)
T ss_pred EEEecccccCcHHHHHHHHHH
Confidence 556899999999999866544
No 238
>PRK12735 elongation factor Tu; Reviewed
Probab=99.51 E-value=2.5e-13 Score=129.47 Aligned_cols=154 Identities=20% Similarity=0.229 Sum_probs=95.8
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCC-----CC-----------CCCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKP-----DI-----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~-----~i-----------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D 163 (310)
+...+|+++|.+++|||||+++|++... .. ....++|.+.....+... +..+.++|
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~--------~~~i~~iD 81 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA--------NRHYAHVD 81 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC--------CcEEEEEE
Confidence 3446799999999999999999986210 00 113345554333222221 12689999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCcHhHH-
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRL- 241 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~- 241 (310)
|||+.+ +.....+.+..+|++++|+|+......+..+.+ ..+.. .++|.+ +++||+|+.+..+..
T Consensus 82 tPGh~~-------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l-~~~~~-----~gi~~iivvvNK~Dl~~~~~~~~ 148 (396)
T PRK12735 82 CPGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ-----VGVPYIVVFLNKCDMVDDEELLE 148 (396)
T ss_pred CCCHHH-------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHH-HHHHH-----cCCCeEEEEEEecCCcchHHHHH
Confidence 999843 334455667789999999999875444433333 34443 367865 579999997543322
Q ss_pred ---HHHHHHHHhcCC-------CccccCccC----------CHHHHHHHHhhc
Q 021615 242 ---QSLTEEILKIGC-------DKVTSETEL----------SSEDAVKSLSTE 274 (310)
Q Consensus 242 ---~~l~~~l~~~g~-------~~~sa~~~~----------gi~~l~~~l~~~ 274 (310)
.++.+.+..+++ ..+|+.++. ++..+++.+...
T Consensus 149 ~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 149 LVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 244445554443 447888873 566677666543
No 239
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.50 E-value=2.3e-13 Score=130.15 Aligned_cols=162 Identities=18% Similarity=0.163 Sum_probs=99.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeCCC--------CC------C--C--ccCCCceE
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDP--------TL------G--A--EKYSSEAT 160 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~~~--------~~------~--~--~~~~~~~~ 160 (310)
-.+|+++|..++|||||+.+|++..... ....+.|............ .+ . + ......+.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 3579999999999999999997642111 1123445443221111100 00 0 0 00113789
Q ss_pred EEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh
Q 021615 161 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD 239 (310)
Q Consensus 161 i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 239 (310)
+|||||+.+ +...++..+..+|++++|+|++++. ..+..+.+ ..+... ...|+++|+||+|+.+..+
T Consensus 89 liDtPG~~~-------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~~----~i~~iiVVlNK~Dl~~~~~ 156 (411)
T PRK04000 89 FVDAPGHET-------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDII----GIKNIVIVQNKIDLVSKER 156 (411)
T ss_pred EEECCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc----CCCcEEEEEEeeccccchh
Confidence 999999754 3445666677889999999999754 23333322 333332 1247899999999986433
Q ss_pred H---HHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhhcc
Q 021615 240 R---LQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 240 ~---~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
. .+++.+.+.. ..+..+|++++.|++++++.+....
T Consensus 157 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 157 ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 2 2334443332 2345589999999999999987654
No 240
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.50 E-value=6.7e-13 Score=106.74 Aligned_cols=167 Identities=19% Similarity=0.183 Sum_probs=119.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
...+|+++|.-++|||+++..|.-.+..+ .++..|--+...+.++.+. .....+.+.||.|+..+. ..+-+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~r-----garE~l~lyDTaGlq~~~---~eLpr 79 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDR-----GAREQLRLYDTAGLQGGQ---QELPR 79 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCC-----ChhheEEEeecccccCch---hhhhH
Confidence 34569999999999999999988655444 2332232344444444321 223478999999997652 22333
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH---HhcCCCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI---LKIGCDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l---~~~g~~~~ 256 (310)
.++.-+|++++|+|..++.+++..+.+..++..+.. ..++|+++++||+|+.+..+........+ ++..+.++
T Consensus 80 ---hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~Kd-KKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eV 155 (198)
T KOG3883|consen 80 ---HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKD-KKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEV 155 (198)
T ss_pred ---hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccc-cccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEE
Confidence 235678999999999999999999999999998654 34799999999999976544333333333 35677889
Q ss_pred ccCccCCHHHHHHHHhhccCCcc
Q 021615 257 TSETELSSEDAVKSLSTEGGEAD 279 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~~~~~ 279 (310)
.+.+...+.+.|..|+...-...
T Consensus 156 ta~dR~sL~epf~~l~~rl~~pq 178 (198)
T KOG3883|consen 156 TAMDRPSLYEPFTYLASRLHQPQ 178 (198)
T ss_pred EeccchhhhhHHHHHHHhccCCc
Confidence 99999999999999988775443
No 241
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=3.8e-13 Score=128.22 Aligned_cols=154 Identities=20% Similarity=0.199 Sum_probs=116.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.|-|.++|.--.|||||+..+-+.........+.|.+.....+..+.. -...++++||||+.-+..+ -
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-----~~~~itFiDTPGHeAFt~m-------R 72 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-----KIPGITFIDTPGHEAFTAM-------R 72 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-----CCceEEEEcCCcHHHHHHH-------H
Confidence 466999999999999999999999887777888898776666665421 0137999999999655321 1
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCC-------
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCD------- 254 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~------- 254 (310)
.+-..-||++++|||+.+....+..+.+ +.++. .+.|+++++||+|+++.. .......+.+.|+.
T Consensus 73 aRGa~vtDIaILVVa~dDGv~pQTiEAI-~hak~-----a~vP~iVAiNKiDk~~~n--p~~v~~el~~~gl~~E~~gg~ 144 (509)
T COG0532 73 ARGASVTDIAILVVAADDGVMPQTIEAI-NHAKA-----AGVPIVVAINKIDKPEAN--PDKVKQELQEYGLVPEEWGGD 144 (509)
T ss_pred hcCCccccEEEEEEEccCCcchhHHHHH-HHHHH-----CCCCEEEEEecccCCCCC--HHHHHHHHHHcCCCHhhcCCc
Confidence 2223568999999999998887777766 34554 489999999999999653 45556666655543
Q ss_pred ----ccccCccCCHHHHHHHHhhcc
Q 021615 255 ----KVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 255 ----~~sa~~~~gi~~l~~~l~~~~ 275 (310)
++||++|.|+.+++..+...+
T Consensus 145 v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 145 VIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred eEEEEeeccCCCCHHHHHHHHHHHH
Confidence 379999999999998865433
No 242
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.49 E-value=5.6e-13 Score=115.09 Aligned_cols=152 Identities=18% Similarity=0.242 Sum_probs=86.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC-CC----CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI-AD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~----~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
.+|+++|.+|||||||+|+|++..... .. ...+|... ..+... . ...+.+|||||+.+....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~-~------~~~l~l~DtpG~~~~~~~---- 68 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHP-K------FPNVTLWDLPGIGSTAFP---- 68 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecC-C------CCCceEEeCCCCCcccCC----
Confidence 469999999999999999999854211 11 00112111 111110 0 126899999999764221
Q ss_pred HHHHHHH--hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH------------hHHHH
Q 021615 178 GRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR------------DRLQS 243 (310)
Q Consensus 178 ~~~~~~~--l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~------------~~~~~ 243 (310)
...+++. +..+|++++|.|.. ....+ ..+.+.+..+ ++|+++|+||+|+.... +..++
T Consensus 69 ~~~~l~~~~~~~~d~~l~v~~~~--~~~~d-~~~~~~l~~~-----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~ 140 (197)
T cd04104 69 PDDYLEEMKFSEYDFFIIISSTR--FSSND-VKLAKAIQCM-----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE 140 (197)
T ss_pred HHHHHHHhCccCcCEEEEEeCCC--CCHHH-HHHHHHHHHh-----CCCEEEEEecccchhhhhhccccccccHHHHHHH
Confidence 1222222 46789999885432 22222 3455666653 68999999999995321 12233
Q ss_pred HHHHHH----hcCC-----CccccC--ccCCHHHHHHHHhhcc
Q 021615 244 LTEEIL----KIGC-----DKVTSE--TELSSEDAVKSLSTEG 275 (310)
Q Consensus 244 l~~~l~----~~g~-----~~~sa~--~~~gi~~l~~~l~~~~ 275 (310)
+.+.+. ..+. ..+|+. .+.++..+.+.+...+
T Consensus 141 i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 141 IRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 333332 2122 225666 4677777777765554
No 243
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.49 E-value=1.3e-12 Score=108.62 Aligned_cols=154 Identities=18% Similarity=0.180 Sum_probs=107.5
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-------CCCCC---ceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-------ADYPF---TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 170 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-------~~~~~---tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~ 170 (310)
...||+++|+.++||||++.+++...+-+ ..+-. ||.....+.+..+.. ..+.++||||+.++
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-------~~v~LfgtPGq~RF 81 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-------TGVHLFGTPGQERF 81 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-------ceEEEecCCCcHHH
Confidence 45789999999999999999999876311 11222 566666666654431 27999999999765
Q ss_pred ccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-
Q 021615 171 AHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL- 249 (310)
Q Consensus 171 ~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~- 249 (310)
...|.-.++.+..+++++|.+.+..+ ....+.+.+... ...|+++++||.|+.++.. .+.+.+.+.
T Consensus 82 -------~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~----~~ip~vVa~NK~DL~~a~p-pe~i~e~l~~ 148 (187)
T COG2229 82 -------KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR----NPIPVVVAINKQDLFDALP-PEKIREALKL 148 (187)
T ss_pred -------HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc----cCCCEEEEeeccccCCCCC-HHHHHHHHHh
Confidence 22333345789999999999998877 334455555542 1289999999999988643 344444443
Q ss_pred ---hcCCCccccCccCCHHHHHHHHhhc
Q 021615 250 ---KIGCDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 250 ---~~g~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
.......++..+.|..+.+..|...
T Consensus 149 ~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 149 ELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ccCCCceeeeecccchhHHHHHHHHHhh
Confidence 3345557888899999988876543
No 244
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.3e-13 Score=113.05 Aligned_cols=160 Identities=22% Similarity=0.217 Sum_probs=113.4
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCCC-C----CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI-A----DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL 173 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~----~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~ 173 (310)
-|.-+.|+|+|.-|||||||+.++-...... . ..-.+|..-+.+++.... ..+.+||.-|+
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~--------~~l~fwdlgGQ------ 79 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN--------APLSFWDLGGQ------ 79 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc--------ceeEEEEcCCh------
Confidence 3455679999999999999999886443211 1 122345555666665442 37999999998
Q ss_pred CchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH----
Q 021615 174 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL---- 249 (310)
Q Consensus 174 ~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~---- 249 (310)
+++...|..+...|++++||||+++++.++......+.+.. .....+.|+++.+||.|+.+..+ ..++...+.
T Consensus 80 -e~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~-~E~leg~p~L~lankqd~q~~~~-~~El~~~~~~~e~ 156 (197)
T KOG0076|consen 80 -ESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVE-NEKLEGAPVLVLANKQDLQNAME-AAELDGVFGLAEL 156 (197)
T ss_pred -HHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHH-HHHhcCCchhhhcchhhhhhhhh-HHHHHHHhhhhhh
Confidence 44555667777899999999999997777666555444433 22345899999999999987643 344444443
Q ss_pred ----hcCCCccccCccCCHHHHHHHHhhcc
Q 021615 250 ----KIGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 250 ----~~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+.+.++|+.+|.|+++-..++....
T Consensus 157 ~~~rd~~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 157 IPRRDNPFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred cCCccCccccchhhhcccHHHHHHHHHHHH
Confidence 23566799999999999999876554
No 245
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.48 E-value=3.8e-13 Score=130.73 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=90.6
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC-----------CCCc----------------------eeeccceEeeC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-----------YPFT----------------------TLMPNLGRLDG 146 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~-----------~~~t----------------------T~~~~~~~v~~ 146 (310)
+...+|+++|.+++|||||+++|+.....+.. ..++ |++.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45678999999999999999999865432211 0122 22222222221
Q ss_pred CCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEE
Q 021615 147 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI 226 (310)
Q Consensus 147 ~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~i 226 (310)
. ...+.++||||+.++ .......+..+|++++|+|+..+...++.+.+ ..+... ..+|++
T Consensus 105 ~--------~~~i~~iDTPGh~~f-------~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~l----g~~~iI 164 (474)
T PRK05124 105 E--------KRKFIIADTPGHEQY-------TRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLL----GIKHLV 164 (474)
T ss_pred C--------CcEEEEEECCCcHHH-------HHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHh----CCCceE
Confidence 1 137899999997533 33444556889999999999875433222222 122222 125789
Q ss_pred EEEeCCCCCCc-HhHHHHHHHHH----HhcC------CCccccCccCCHHHH
Q 021615 227 VVLNKIDLPEA-RDRLQSLTEEI----LKIG------CDKVTSETELSSEDA 267 (310)
Q Consensus 227 vv~NK~Dl~~~-~~~~~~l~~~l----~~~g------~~~~sa~~~~gi~~l 267 (310)
+|+||+|+.+. .+..+++.+.+ ..++ +.++|++++.|+..+
T Consensus 165 vvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 165 VAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred EEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 99999999743 23334444333 2333 445899999998764
No 246
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=5.1e-13 Score=105.91 Aligned_cols=153 Identities=18% Similarity=0.229 Sum_probs=106.8
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
-.+|+.+|..+|||||++..|.-.++.. ...|..-++.++.+... +|.+||.-|+.. +..-|
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~---~ipTvGFnvetVtykN~--------kfNvwdvGGqd~-------iRplW 78 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYKNV--------KFNVWDVGGQDK-------IRPLW 78 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcc---cccccceeEEEEEeeee--------EEeeeeccCchh-------hhHHH
Confidence 3679999999999999999998765322 11233333444544432 799999999854 33345
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhc--CCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------hcC
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY--NPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIG 252 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~--~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~~g 252 (310)
..++..+.+++||+|+++.+..+. .++||... .+++...|+++.+||.|++++.. ..++.+.++ ...
T Consensus 79 rhYy~gtqglIFV~Dsa~~dr~ee---Ar~ELh~ii~~~em~~~~~LvlANkQDlp~A~~-pqei~d~leLe~~r~~~W~ 154 (180)
T KOG0071|consen 79 RHYYTGTQGLIFVVDSADRDRIEE---ARNELHRIINDREMRDAIILILANKQDLPDAMK-PQEIQDKLELERIRDRNWY 154 (180)
T ss_pred HhhccCCceEEEEEeccchhhHHH---HHHHHHHHhCCHhhhcceEEEEecCcccccccC-HHHHHHHhccccccCCccE
Confidence 556788999999999987655443 44555432 34556789999999999997632 455555554 123
Q ss_pred CCccccCccCCHHHHHHHHhhccC
Q 021615 253 CDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+.++++.+++|+.+-+.+|+....
T Consensus 155 vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 155 VQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred eeccccccchhHHHHHHHHHhhcc
Confidence 445899999999999999877653
No 247
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.47 E-value=4e-13 Score=135.25 Aligned_cols=147 Identities=17% Similarity=0.149 Sum_probs=90.4
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC-----------CCCce----------------------eeccceEeeC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-----------YPFTT----------------------LMPNLGRLDG 146 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~-----------~~~tT----------------------~~~~~~~v~~ 146 (310)
+...+|+++|.+|+|||||+++|+.....+.. ..++| ++.....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 33457999999999999999999976533311 22332 2222222221
Q ss_pred CCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEE
Q 021615 147 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI 226 (310)
Q Consensus 147 ~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~i 226 (310)
. +.++.++||||+.++ .......+..+|++++|+|+..+...++.+.+ ..+... ..++++
T Consensus 102 ~--------~~~~~liDtPG~~~f-------~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~----~~~~ii 161 (632)
T PRK05506 102 P--------KRKFIVADTPGHEQY-------TRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLL----GIRHVV 161 (632)
T ss_pred C--------CceEEEEECCChHHH-------HHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHh----CCCeEE
Confidence 1 237899999998543 23344557789999999999875433322222 223332 125788
Q ss_pred EEEeCCCCCC-cHhHHHHHH----HHHHhcCC-----CccccCccCCHHH
Q 021615 227 VVLNKIDLPE-ARDRLQSLT----EEILKIGC-----DKVTSETELSSED 266 (310)
Q Consensus 227 vv~NK~Dl~~-~~~~~~~l~----~~l~~~g~-----~~~sa~~~~gi~~ 266 (310)
+|+||+|+.+ ..+..+++. +.+..+++ ..+|++++.|+.+
T Consensus 162 vvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 162 LAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred EEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 9999999975 223333333 33344443 4589999999874
No 248
>PRK00049 elongation factor Tu; Reviewed
Probab=99.47 E-value=7.5e-13 Score=126.13 Aligned_cols=153 Identities=20% Similarity=0.216 Sum_probs=96.7
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC----------------CCCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i----------------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D 163 (310)
+...+|+++|.+++|||||+++|++..... ....++|++.....+... +..+.++|
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------~~~i~~iD 81 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE--------KRHYAHVD 81 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC--------CeEEEEEE
Confidence 344679999999999999999999731110 113455665443333221 13689999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCcHhHH-
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRL- 241 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~- 241 (310)
|||+.+ +.......+..+|++++|+|+..+...++.+ ++..+.. .+.|.+ +++||+|+.+..+..
T Consensus 82 tPG~~~-------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~-~~~~~~~-----~g~p~iiVvvNK~D~~~~~~~~~ 148 (396)
T PRK00049 82 CPGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQ-----VGVPYIVVFLNKCDMVDDEELLE 148 (396)
T ss_pred CCCHHH-------HHHHHHhhhccCCEEEEEEECCCCCchHHHH-HHHHHHH-----cCCCEEEEEEeecCCcchHHHHH
Confidence 999853 2334445567899999999998765444433 3344544 367876 689999998543322
Q ss_pred ---HHHHHHHHhcCC-------CccccCccC----------CHHHHHHHHhh
Q 021615 242 ---QSLTEEILKIGC-------DKVTSETEL----------SSEDAVKSLST 273 (310)
Q Consensus 242 ---~~l~~~l~~~g~-------~~~sa~~~~----------gi~~l~~~l~~ 273 (310)
.++.+.+..+++ ..+|+..+. ++..+++.|..
T Consensus 149 ~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~ 200 (396)
T PRK00049 149 LVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS 200 (396)
T ss_pred HHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHh
Confidence 245555555544 336777654 45566666654
No 249
>PLN03127 Elongation factor Tu; Provisional
Probab=99.47 E-value=1.3e-12 Score=125.86 Aligned_cols=119 Identities=21% Similarity=0.214 Sum_probs=78.7
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCC------C----------CCCCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKP------D----------IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~------~----------i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D 163 (310)
|...+|+++|..++|||||+++|++... . .....++|++.....++.. +.++.++|
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------~~~i~~iD 130 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA--------KRHYAHVD 130 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC--------CeEEEEEE
Confidence 4456799999999999999999973310 0 0122566666544333322 12789999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHh
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARD 239 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~ 239 (310)
|||+.++ .......+..+|++++|+|+......++.+ ....+.. .++| +++++||+|+.+..+
T Consensus 131 tPGh~~f-------~~~~~~g~~~aD~allVVda~~g~~~qt~e-~l~~~~~-----~gip~iIvviNKiDlv~~~~ 194 (447)
T PLN03127 131 CPGHADY-------VKNMITGAAQMDGGILVVSAPDGPMPQTKE-HILLARQ-----VGVPSLVVFLNKVDVVDDEE 194 (447)
T ss_pred CCCccch-------HHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHHH-----cCCCeEEEEEEeeccCCHHH
Confidence 9998543 233344556799999999998765444433 3334444 3678 578899999986433
No 250
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.47 E-value=8.6e-13 Score=125.73 Aligned_cols=142 Identities=20% Similarity=0.220 Sum_probs=89.8
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCC----------C------CCCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPD----------I------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~----------i------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D 163 (310)
+.-.+|+++|..++|||||+++|++.... . ....++|.+.....+... +..+.+||
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~--------~~~~~liD 81 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE--------NRHYAHVD 81 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC--------CEEEEEEE
Confidence 34467999999999999999999843100 0 112456665433333211 13689999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCcHhHH-
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEARDRL- 241 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~- 241 (310)
|||+.++ ...+...+..+|++++|+|+......++.+.+ ..+.. .+.|.+ +|+||+|+.+..+..
T Consensus 82 tpGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l-~~~~~-----~gi~~iIvvvNK~Dl~~~~~~~~ 148 (394)
T TIGR00485 82 CPGHADY-------VKNMITGAAQMDGAILVVSATDGPMPQTREHI-LLARQ-----VGVPYIVVFLNKCDMVDDEELLE 148 (394)
T ss_pred CCchHHH-------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCEEEEEEEecccCCHHHHHH
Confidence 9999654 33455666789999999999875544444333 33443 356755 689999998654322
Q ss_pred ---HHHHHHHHhcC-------CCccccCccC
Q 021615 242 ---QSLTEEILKIG-------CDKVTSETEL 262 (310)
Q Consensus 242 ---~~l~~~l~~~g-------~~~~sa~~~~ 262 (310)
+++.+.+...+ +..+|+.++.
T Consensus 149 ~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 149 LVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 24555555544 3346777664
No 251
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.46 E-value=7.1e-13 Score=134.61 Aligned_cols=117 Identities=23% Similarity=0.196 Sum_probs=82.1
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC------CC------------CCCceeeccceEeeCCCCCCCccCCCceEE
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI------AD------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 161 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i------~~------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i 161 (310)
..+.+|+++|.+|+|||||+++|+.....+ .+ ..++|+......+.+.. .++.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--------~~i~l 79 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--------HRINI 79 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--------eEEEE
Confidence 456789999999999999999997532211 11 23445554444444332 27999
Q ss_pred EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
|||||+.++. ......++.+|++++|+|+.+....++.. ++..+.. .++|+++|+||+|+..+
T Consensus 80 iDTPG~~~~~-------~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~-----~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 80 IDTPGHVDFT-------VEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR-----YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred EECCCCcchh-------HHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH-----cCCCEEEEEECCCCCCC
Confidence 9999997652 13456678899999999998866555443 4444544 36899999999999864
No 252
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.2e-12 Score=124.40 Aligned_cols=155 Identities=20% Similarity=0.176 Sum_probs=117.4
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
..++.|-|-++|.-.-|||||+.+|-+.........+.|.+.-...+.... +.++++.||||+..+.
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-------G~~iTFLDTPGHaAF~------ 215 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-------GKSITFLDTPGHAAFS------ 215 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-------CCEEEEecCCcHHHHH------
Confidence 345678899999999999999999999987777788888876666665442 2489999999995442
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC----
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---- 253 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~---- 253 (310)
..-.+-..-+|++++||.+.+....+..+.+.. .+. .+.|+++.+||||.+++. .+...+.|...|+
T Consensus 216 -aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkh-Ak~-----A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~ 286 (683)
T KOG1145|consen 216 -AMRARGANVTDIVVLVVAADDGVMPQTLEAIKH-AKS-----ANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVED 286 (683)
T ss_pred -HHHhccCccccEEEEEEEccCCccHhHHHHHHH-HHh-----cCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHH
Confidence 222334456899999999999888777766643 332 589999999999998764 4556666655443
Q ss_pred -------CccccCccCCHHHHHHHHhhc
Q 021615 254 -------DKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 254 -------~~~sa~~~~gi~~l~~~l~~~ 274 (310)
.++||++|+|+..+-+.+...
T Consensus 287 ~GGdVQvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 287 LGGDVQVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred cCCceeEEEeecccCCChHHHHHHHHHH
Confidence 348999999999999876543
No 253
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.45 E-value=1.1e-12 Score=125.30 Aligned_cols=143 Identities=19% Similarity=0.190 Sum_probs=88.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCC---------------------------------CCCceeeccceEeeCCCCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIAD---------------------------------YPFTTLMPNLGRLDGDPTL 150 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~---------------------------------~~~tT~~~~~~~v~~~~~~ 150 (310)
+|+++|..++|||||+++|+.....+.. .-+.|++.....+...
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 6999999999999999999754322210 0112233222222221
Q ss_pred CCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 021615 151 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN 230 (310)
Q Consensus 151 ~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~N 230 (310)
+.++.++||||+.++ .......+..+|++++|+|+..+...++.+.+ ..+..+ ...++++|+|
T Consensus 79 -----~~~~~liDtPGh~~f-------~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~----~~~~iivviN 141 (406)
T TIGR02034 79 -----KRKFIVADTPGHEQY-------TRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLL----GIRHVVLAVN 141 (406)
T ss_pred -----CeEEEEEeCCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHc----CCCcEEEEEE
Confidence 237899999998543 33344567799999999999875444333322 233332 1246889999
Q ss_pred CCCCCCcH-hHHHHHHHH----HHhcC-----CCccccCccCCHHH
Q 021615 231 KIDLPEAR-DRLQSLTEE----ILKIG-----CDKVTSETELSSED 266 (310)
Q Consensus 231 K~Dl~~~~-~~~~~l~~~----l~~~g-----~~~~sa~~~~gi~~ 266 (310)
|+|+.+.. +..+.+.+. +...+ +.++|+.+|.|+.+
T Consensus 142 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 142 KMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 99997532 233333333 33444 34589999999875
No 254
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.45 E-value=6.1e-13 Score=120.96 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=78.1
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
....+|+++|.+|+||||++|+|++.+... +.+..+|..+........ +.++.++||||+.+....+....
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--------G~~l~VIDTPGL~d~~~~~e~~~ 107 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--------GFTLNIIDTPGLIEGGYINDQAV 107 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--------CeEEEEEECCCCCchHHHHHHHH
Confidence 345789999999999999999999988643 555555554443332222 12799999999987632222211
Q ss_pred HHHHHHh--hhcCEEEEecccCCC-CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 179 RNFLRHL--RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 179 ~~~~~~l--~~~d~il~VvD~s~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
.....++ ...|+++||.+.+.. ....+ ..+.+.+..........++++|+|++|...
T Consensus 108 ~~ik~~l~~~g~DvVLyV~rLD~~R~~~~D-kqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 108 NIIKRFLLGKTIDVLLYVDRLDAYRVDTLD-GQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHHhhcCCCCEEEEEeccCcccCCHHH-HHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 1111112 258999999554432 22222 223344443322223478999999999763
No 255
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.43 E-value=5.1e-13 Score=117.59 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=94.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
||+++|+.++||||+.+.+++.-+ .-..+...|..+....+..... -.+.+||+||+...... .+...-.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-------~~l~iwD~pGq~~~~~~--~~~~~~~ 71 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-------LPLNIWDCPGQDDFMEN--YFNSQRE 71 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-------CEEEEEEE-SSCSTTHT--THTCCHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-------cEEEEEEcCCccccccc--cccccHH
Confidence 699999999999999999997753 3355666777766666643322 17899999999865332 1111112
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHH---HHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------HHHHHHHHHhcC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKE---ELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILKIG 252 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~---~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------~~~l~~~l~~~g 252 (310)
.-++.++++|||+|+.+.+..+++..+.. .+.++.+ +..+.|+++|+|+...+.+ .+.+.+.+...+
T Consensus 72 ~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp---~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~ 148 (232)
T PF04670_consen 72 EIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP---NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG 148 (232)
T ss_dssp HHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST---T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 23578999999999996555555554444 4455554 6789999999999875432 234444445444
Q ss_pred -----CCccccCccCCHHHHHHHHhhcc
Q 021615 253 -----CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 253 -----~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+..+|..+ ..+.+++..+...+
T Consensus 149 ~~~~~~~~TSI~D-~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 149 IEDITFFLTSIWD-ESLYEAWSKIVQKL 175 (232)
T ss_dssp -TSEEEEEE-TTS-THHHHHHHHHHHTT
T ss_pred ccceEEEeccCcC-cHHHHHHHHHHHHH
Confidence 33356666 36666666655544
No 256
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.43 E-value=7.8e-13 Score=110.68 Aligned_cols=120 Identities=25% Similarity=0.249 Sum_probs=75.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCC---------------------------------
Q 021615 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG--------------------------------- 151 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~--------------------------------- 151 (310)
|+++|..++|||||+|+|+|.+........+|..+..-.........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 78999999999999999999874432222333322222211000000
Q ss_pred ---------------CccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhc
Q 021615 152 ---------------AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY 216 (310)
Q Consensus 152 ---------------~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~ 216 (310)
.......+.|+||||+.+....... .+.+++..+|+++||+++.......+...+.+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~---~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~ 157 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTE---ITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD 157 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSH---HHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHH---HHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC
Confidence 0000236899999999775443343 3445567999999999999876666667676666542
Q ss_pred CCCCCCCCEEEEEeCC
Q 021615 217 NPDYLERPFIVVLNKI 232 (310)
Q Consensus 217 ~~~~~~~p~ivv~NK~ 232 (310)
...+++|.||+
T Consensus 158 -----~~~~i~V~nk~ 168 (168)
T PF00350_consen 158 -----KSRTIFVLNKA 168 (168)
T ss_dssp -----CSSEEEEEE-G
T ss_pred -----CCeEEEEEcCC
Confidence 34589999995
No 257
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.43 E-value=2.7e-12 Score=116.54 Aligned_cols=140 Identities=19% Similarity=0.208 Sum_probs=81.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCC---------CCCce-eeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIAD---------YPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 172 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~---------~~~tT-~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~ 172 (310)
++|+++|.+|+|||||+|+|++....... ...|+ .......+..+. . .-++.+|||||+.+...
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g----~--~~~l~iiDTpGfgd~~~ 78 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENG----V--KLKLTVIDTPGFGDNIN 78 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECC----E--EEEEEEEecCCcccccc
Confidence 57999999999999999999988643321 22222 222222222211 1 12689999999976533
Q ss_pred CCc-------hHHHHHHHHh--------------hhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 021615 173 LGK-------GLGRNFLRHL--------------RRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLN 230 (310)
Q Consensus 173 ~~~-------~l~~~~~~~l--------------~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~N 230 (310)
... .+..+|..++ .++|+++|+++.+... ...+++ +.+.+.. .+|+++|+|
T Consensus 79 ~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~-~lk~l~~------~v~vi~Vin 151 (276)
T cd01850 79 NSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE-FMKRLSK------RVNIIPVIA 151 (276)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH-HHHHHhc------cCCEEEEEE
Confidence 211 1111222211 1478999999987532 223333 3344442 589999999
Q ss_pred CCCCCCcHh---HHHHHHHHHHhcCCCc
Q 021615 231 KIDLPEARD---RLQSLTEEILKIGCDK 255 (310)
Q Consensus 231 K~Dl~~~~~---~~~~l~~~l~~~g~~~ 255 (310)
|+|+....+ ....+.+.+...++..
T Consensus 152 K~D~l~~~e~~~~k~~i~~~l~~~~i~~ 179 (276)
T cd01850 152 KADTLTPEELKEFKQRIMEDIEEHNIKI 179 (276)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHcCCce
Confidence 999976433 2334445555555443
No 258
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=8.8e-14 Score=114.56 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=110.9
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 175 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~ 175 (310)
.+...+|++++|..++||||++.+++..-.. .+|. .|+ +-....+... .. ..++.+|||+|+.++.
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifT-kdyk-ktIgvdflerqi~v~----~E--dvr~mlWdtagqeEfD---- 83 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFT-KDYK-KTIGVDFLERQIKVL----IE--DVRSMLWDTAGQEEFD---- 83 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccc-cccc-cccchhhhhHHHHhh----HH--HHHHHHHHhccchhHH----
Confidence 3455678999999999999999999954311 1110 011 0000001100 00 1267899999998773
Q ss_pred hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhc
Q 021615 176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKI 251 (310)
Q Consensus 176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~ 251 (310)
.+.. .+.+.|.+.++|++.++..+++....|.+++..-. .++|.++|-||+|+.+... ..+.+.+.+ ..
T Consensus 84 aItk---Ayyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~---~~IPtV~vqNKIDlveds~~~~~evE~lak~l-~~ 156 (246)
T KOG4252|consen 84 AITK---AYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET---ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL-HK 156 (246)
T ss_pred HHHH---HHhccccceEEEEecccHHHHHHHHHHHHHHHHHh---ccCCeEEeeccchhhHhhhcchHHHHHHHHHh-hh
Confidence 2333 44568999999999999999999999999887633 4799999999999986432 234444333 35
Q ss_pred CCCccccCccCCHHHHHHHHhhccC
Q 021615 252 GCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 252 g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
.+..+|.+...++..+|.+|++...
T Consensus 157 RlyRtSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 157 RLYRTSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 6778999999999999999987553
No 259
>PLN03126 Elongation factor Tu; Provisional
Probab=99.43 E-value=1.9e-12 Score=125.52 Aligned_cols=133 Identities=19% Similarity=0.220 Sum_probs=85.9
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC----------------CCCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i----------------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D 163 (310)
+...+|+++|.+++|||||+++|++....+ ....+.|.+.....+... +..+.++|
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--------~~~i~liD 150 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--------NRHYAHVD 150 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--------CcEEEEEE
Confidence 445679999999999999999999632211 112233443322223221 23789999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHHH
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQ 242 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~ 242 (310)
|||+.++ .......+..+|++++|+|+......+..+.+ ..+.. .++| +++++||+|+.+.++..+
T Consensus 151 tPGh~~f-------~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~-~~~~~-----~gi~~iIvvvNK~Dl~~~~~~~~ 217 (478)
T PLN03126 151 CPGHADY-------VKNMITGAAQMDGAILVVSGADGPMPQTKEHI-LLAKQ-----VGVPNMVVFLNKQDQVDDEELLE 217 (478)
T ss_pred CCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEecccccCHHHHHH
Confidence 9998653 33445667789999999999876555443433 34444 3677 778999999986443333
Q ss_pred ----HHHHHHHhcCC
Q 021615 243 ----SLTEEILKIGC 253 (310)
Q Consensus 243 ----~l~~~l~~~g~ 253 (310)
++.+.+..+++
T Consensus 218 ~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 218 LVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHHHhcCC
Confidence 45555555554
No 260
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.42 E-value=2.8e-13 Score=115.23 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=113.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..|+++||..++|||+|+..++.... ...|..|-.+-....+..+. +.. ..+.+|||+|+.+..... -
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~f-p~~yvPTVFdnys~~v~V~d---g~~--v~L~LwDTAGqedYDrlR-----p- 71 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAF-PEEYVPTVFDNYSANVTVDD---GKP--VELGLWDTAGQEDYDRLR-----P- 71 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcC-cccccCeEEccceEEEEecC---CCE--EEEeeeecCCCccccccc-----c-
Confidence 35799999999999999998886631 12222222222223333320 111 268999999999874321 1
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----------------hHHHHH
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRLQSL 244 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----------------~~~~~l 244 (310)
+ .+..+|+++++++..++.++++. ..|..|+..+.+ +.|+|+|++|.|+.+.. ++..++
T Consensus 72 l-sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp---~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~l 147 (198)
T KOG0393|consen 72 L-SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP---NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLEL 147 (198)
T ss_pred c-CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC---CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHH
Confidence 1 35688999999999999998875 778889999874 89999999999998532 223455
Q ss_pred HHHHHhcCCCccccCccCCHHHHHHHHhhccCC
Q 021615 245 TEEILKIGCDKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 245 ~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
.+.+....+.++|+.+..|+.++|+.....+..
T Consensus 148 A~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 148 AKEIGAVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred HHHhCcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 555555678889999999999999887665544
No 261
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.42 E-value=5.4e-13 Score=105.92 Aligned_cols=154 Identities=21% Similarity=0.263 Sum_probs=104.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
-.+|+++|..|||||||+..|.+.++.- .+ |...+...+.++.. + .+++||+-|+ +++...
T Consensus 17 EirilllGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g~-----f--~LnvwDiGGq-------r~IRpy 78 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDGT-----F--HLNVWDIGGQ-------RGIRPY 78 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecCc-----E--EEEEEecCCc-------cccchh
Confidence 3569999999999999999999988542 22 22222334444432 1 7899999998 445556
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------hcCC
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIGC 253 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~~g~ 253 (310)
|..++++.|.++||+|..+...++.+..-+-||.. .......|+++..||.|++.+.. .+++...+. ...+
T Consensus 79 WsNYyenvd~lIyVIDS~D~krfeE~~~el~ELle-eeKl~~vpvlIfankQdlltaa~-~eeia~klnl~~lrdRswhI 156 (185)
T KOG0074|consen 79 WSNYYENVDGLIYVIDSTDEKRFEEISEELVELLE-EEKLAEVPVLIFANKQDLLTAAK-VEEIALKLNLAGLRDRSWHI 156 (185)
T ss_pred hhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhh-hhhhhccceeehhhhhHHHhhcc-hHHHHHhcchhhhhhceEEe
Confidence 66778899999999998776655544332223221 12235789999999999986532 233333322 3346
Q ss_pred CccccCccCCHHHHHHHHhhcc
Q 021615 254 DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
..+|+....|+.+-..+++.+.
T Consensus 157 q~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 157 QECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred eeCccccccCccCcchhhhcCC
Confidence 6689999999988888876554
No 262
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.8e-12 Score=123.28 Aligned_cols=160 Identities=20% Similarity=0.186 Sum_probs=114.3
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCC---------------CCCCCCCceeeccceEeeCCCCCCCccCCCceEEE
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKP---------------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 162 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~---------------~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~ 162 (310)
....+.+++||-.---|||||..+|+.... .+...-+.|+..+...+.+.. +..| .++++
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~---~~~y--lLNLI 130 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD---GQSY--LLNLI 130 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc---CCce--EEEee
Confidence 445778899999999999999999975322 122345667766665554433 1223 78999
Q ss_pred eCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--H
Q 021615 163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--R 240 (310)
Q Consensus 163 DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~ 240 (310)
||||+.++.. ...+.+..||++++|||++.+...+..-.++..++ .+..+|.|+||+|++.++. .
T Consensus 131 DTPGHvDFs~-------EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe------~~L~iIpVlNKIDlp~adpe~V 197 (650)
T KOG0462|consen 131 DTPGHVDFSG-------EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE------AGLAIIPVLNKIDLPSADPERV 197 (650)
T ss_pred cCCCcccccc-------eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH------cCCeEEEeeeccCCCCCCHHHH
Confidence 9999998854 33456678999999999999887777776766665 3678899999999997642 2
Q ss_pred HHHHHHHHHhc--CCCccccCccCCHHHHHHHHhhcc
Q 021615 241 LQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 241 ~~~l~~~l~~~--g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
...+.+.+... .+..+||++|.|++++++.+.+..
T Consensus 198 ~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 198 ENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred HHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhC
Confidence 22333333211 344489999999999999876655
No 263
>PRK00007 elongation factor G; Reviewed
Probab=99.42 E-value=1.6e-12 Score=131.97 Aligned_cols=117 Identities=21% Similarity=0.170 Sum_probs=82.7
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCC---CC---C------------CCCCceeeccceEeeCCCCCCCccCCCceEE
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKP---DI---A------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 161 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~---~i---~------------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i 161 (310)
..+.+|+|+|.+|+|||||+++|+.... .+ . ...++|++.....+.+.. ..+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--------~~~~l 79 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--------HRINI 79 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--------eEEEE
Confidence 4567899999999999999999974211 11 1 134455555444444332 37999
Q ss_pred EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
+||||+.++. ....+.+..+|++++|+|+......++.. ++..+.. .++|.++++||+|+..+
T Consensus 80 iDTPG~~~f~-------~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~-----~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 80 IDTPGHVDFT-------IEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK-----YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred EeCCCcHHHH-------HHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH-----cCCCEEEEEECCCCCCC
Confidence 9999987642 23556778899999999998876666544 4445554 36899999999999864
No 264
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.42 E-value=3.3e-12 Score=125.45 Aligned_cols=130 Identities=20% Similarity=0.256 Sum_probs=81.8
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC---CCC------CCc-------------eeeccceEeeCCCCCCCccC
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADY------PFT-------------TLMPNLGRLDGDPTLGAEKY 155 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i---~~~------~~t-------------T~~~~~~~v~~~~~~~~~~~ 155 (310)
+.....+|+++|.+++|||||+++|+.....+ +.. ..+ |.......+++.
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~-------- 78 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR-------- 78 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC--------
Confidence 55667889999999999999999986322111 100 011 111111222222
Q ss_pred CCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
+..+.+|||||+.++ ....++.+..+|++++|+|++.....+ .+.+++.+.. .+.|+++++||+|+.
T Consensus 79 ~~~inliDTPG~~df-------~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~-----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 79 DCLVNLLDTPGHEDF-------SEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVTRL-----RDTPIFTFMNKLDRD 145 (527)
T ss_pred CeEEEEEECCChhhH-------HHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh-----cCCCEEEEEECcccc
Confidence 127899999999654 234456778999999999998753333 3445444443 368999999999997
Q ss_pred Cc--HhHHHHHHHHH
Q 021615 236 EA--RDRLQSLTEEI 248 (310)
Q Consensus 236 ~~--~~~~~~l~~~l 248 (310)
.. .+..+.+.+.+
T Consensus 146 ~~~~~~ll~~i~~~l 160 (527)
T TIGR00503 146 IRDPLELLDEVENEL 160 (527)
T ss_pred CCCHHHHHHHHHHHh
Confidence 53 23344444444
No 265
>PRK12739 elongation factor G; Reviewed
Probab=99.42 E-value=2.1e-12 Score=131.19 Aligned_cols=117 Identities=23% Similarity=0.166 Sum_probs=82.5
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCC---CC---C------------CCCCceeeccceEeeCCCCCCCccCCCceEE
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKP---DI---A------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 161 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~---~i---~------------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i 161 (310)
..+.+|+++|.+|+|||||+++|+.... .+ . ...++|++.....+.+.. .++.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--------~~i~l 77 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--------HRINI 77 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--------EEEEE
Confidence 3567899999999999999999975321 11 1 133455544444444322 27999
Q ss_pred EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
+||||+.++ .....+.+..+|++++|+|+......++. .++..+.. .++|+++++||+|+...
T Consensus 78 iDTPG~~~f-------~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~-----~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 78 IDTPGHVDF-------TIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK-----YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred EcCCCHHHH-------HHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECCCCCCC
Confidence 999998653 22456778899999999999886655544 34445554 36899999999999864
No 266
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.41 E-value=1.9e-12 Score=127.03 Aligned_cols=130 Identities=21% Similarity=0.262 Sum_probs=82.8
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC---CCC------CCc-------------eeeccceEeeCCCCCCCccC
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADY------PFT-------------TLMPNLGRLDGDPTLGAEKY 155 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i---~~~------~~t-------------T~~~~~~~v~~~~~~~~~~~ 155 (310)
+.....+|+|+|.+|+|||||+++|+.....+ +.. ..+ |.......+.+.
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~-------- 77 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR-------- 77 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC--------
Confidence 45667889999999999999999997422111 110 111 111111222222
Q ss_pred CCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
+..+.+|||||+.++. ....+++..+|++++|+|+++....+ .+.+++.... .+.|+++++||+|+.
T Consensus 78 ~~~inliDTPG~~df~-------~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~-----~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 78 DCLINLLDTPGHEDFS-------EDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL-----RDTPIFTFINKLDRD 144 (526)
T ss_pred CEEEEEEECCCchhhH-------HHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh-----cCCCEEEEEECCccc
Confidence 1279999999997652 23456678999999999998765433 3444444443 378999999999997
Q ss_pred CcH--hHHHHHHHHH
Q 021615 236 EAR--DRLQSLTEEI 248 (310)
Q Consensus 236 ~~~--~~~~~l~~~l 248 (310)
... +..+++.+.+
T Consensus 145 ~a~~~~~l~~i~~~l 159 (526)
T PRK00741 145 GREPLELLDEIEEVL 159 (526)
T ss_pred ccCHHHHHHHHHHHh
Confidence 643 2234444443
No 267
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=2e-12 Score=121.13 Aligned_cols=161 Identities=26% Similarity=0.308 Sum_probs=119.1
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCC---------------CCCCCCCceeeccceEeeCCCCCCCccCCCceEEE
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKP---------------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 162 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~---------------~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~ 162 (310)
..+.+.+..++-.-.-|||||-.+|+.... .+...-+.|+..+...+.+... ++..| .++++
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~-~g~~Y--~lnlI 81 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAK-DGETY--VLNLI 81 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeC-CCCEE--EEEEc
Confidence 345677889999999999999999975421 2234567787777766665431 22334 78999
Q ss_pred eCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHH
Q 021615 163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ 242 (310)
Q Consensus 163 DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 242 (310)
||||+.+++- ..-+.+..|.+.++|||++.+...+.+...+-.+.. +.-++-|+||+|++.++ .+
T Consensus 82 DTPGHVDFsY-------EVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~------~LeIiPViNKIDLP~Ad--pe 146 (603)
T COG0481 82 DTPGHVDFSY-------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN------NLEIIPVLNKIDLPAAD--PE 146 (603)
T ss_pred CCCCccceEE-------EehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc------CcEEEEeeecccCCCCC--HH
Confidence 9999999854 234566789999999999998877777777767763 66789999999999764 34
Q ss_pred HHHHHHHh-cCCCc-----cccCccCCHHHHHHHHhhccC
Q 021615 243 SLTEEILK-IGCDK-----VTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 243 ~l~~~l~~-~g~~~-----~sa~~~~gi~~l~~~l~~~~~ 276 (310)
..+++++. +|+.. +||++|.|++++++.+....-
T Consensus 147 rvk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 147 RVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred HHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCC
Confidence 44555543 34443 899999999999999877653
No 268
>PRK13768 GTPase; Provisional
Probab=99.37 E-value=3.3e-12 Score=114.58 Aligned_cols=114 Identities=22% Similarity=0.298 Sum_probs=75.1
Q ss_pred CceEEEeCCCCCccccCCchHHHHHHHHhhh--cCEEEEecccCCCCcHHHHHHHH--HHHHhcCCCCCCCCEEEEEeCC
Q 021615 157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDYRTVK--EELRMYNPDYLERPFIVVLNKI 232 (310)
Q Consensus 157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~--~d~il~VvD~s~~~~~~~~~~~~--~~l~~~~~~~~~~p~ivv~NK~ 232 (310)
..+.++||||+.+.... ......+.+++.. ++++++|+|++......++.... ....... .++|+++|+||+
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~---~~~~~i~v~nK~ 172 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR---LGLPQIPVLNKA 172 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH---cCCCEEEEEEhH
Confidence 36899999999876533 5566677777766 89999999997654444432221 1111111 378999999999
Q ss_pred CCCCcHhHHHHHHH----------------------------HHHhcC----CCccccCccCCHHHHHHHHhhcc
Q 021615 233 DLPEARDRLQSLTE----------------------------EILKIG----CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 233 Dl~~~~~~~~~l~~----------------------------~l~~~g----~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
|+.+..+. +.+.+ .+.+.+ +..+|+.++.|++++...+....
T Consensus 173 D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 173 DLLSEEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhcCchhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 99865332 11111 122223 34589999999999998876544
No 269
>PRK13351 elongation factor G; Reviewed
Probab=99.37 E-value=5.4e-12 Score=128.30 Aligned_cols=128 Identities=25% Similarity=0.258 Sum_probs=83.6
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC---C---------C------CCCceeeccceEeeCCCCCCCccCCCceEE
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI---A---------D------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 161 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i---~---------~------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i 161 (310)
..+.+|+++|..|+|||||+++|+.....+ + + ....|+......+.+. +..+++
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--------~~~i~l 77 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--------NHRINL 77 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--------CEEEEE
Confidence 346789999999999999999998542111 0 0 0112222222233222 237999
Q ss_pred EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--h
Q 021615 162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--D 239 (310)
Q Consensus 162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~ 239 (310)
|||||+.++. ......++.+|++++|+|+++....+... ++..+.. .++|+++|+||+|+...+ .
T Consensus 78 iDtPG~~df~-------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~-~~~~~~~-----~~~p~iiviNK~D~~~~~~~~ 144 (687)
T PRK13351 78 IDTPGHIDFT-------GEVERSLRVLDGAVVVFDAVTGVQPQTET-VWRQADR-----YGIPRLIFINKMDRVGADLFK 144 (687)
T ss_pred EECCCcHHHH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCCEEEEEECCCCCCCCHHH
Confidence 9999997642 23456678899999999999876655544 3344544 368999999999998652 2
Q ss_pred HHHHHHHHH
Q 021615 240 RLQSLTEEI 248 (310)
Q Consensus 240 ~~~~l~~~l 248 (310)
..+++.+.+
T Consensus 145 ~~~~i~~~l 153 (687)
T PRK13351 145 VLEDIEERF 153 (687)
T ss_pred HHHHHHHHH
Confidence 334444443
No 270
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.36 E-value=2.9e-12 Score=112.69 Aligned_cols=114 Identities=22% Similarity=0.283 Sum_probs=70.0
Q ss_pred ceEEEeCCCCCccccC---CchHHHHHHHHhhhcCEEEEecccCCCCcHH----HHHHHHHHHHhcCCCCCCCCEEEEEe
Q 021615 158 EATLADLPGLIEGAHL---GKGLGRNFLRHLRRTRLLVHVIDAAAENPVN----DYRTVKEELRMYNPDYLERPFIVVLN 230 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~---~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~----~~~~~~~~l~~~~~~~~~~p~ivv~N 230 (310)
.+.++||||+++-... +.-+...+.... .-+++||+|........ +....+..|.. .+.|+|+|+|
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte~lass~--ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk-----tklp~ivvfN 189 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITETLASSF--PTVVVYVVDTPRSTSPTTFMSNMLYACSILYK-----TKLPFIVVFN 189 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHhhHhhcC--CeEEEEEecCCcCCCchhHHHHHHHHHHHHHh-----ccCCeEEEEe
Confidence 5899999999984322 222344443322 35889999976532222 22233334443 4789999999
Q ss_pred CCCCCCcHh------HHHHHHHHH-----------------------HhcCCCccccCccCCHHHHHHHHhhccCCc
Q 021615 231 KIDLPEARD------RLQSLTEEI-----------------------LKIGCDKVTSETELSSEDAVKSLSTEGGEA 278 (310)
Q Consensus 231 K~Dl~~~~~------~~~~l~~~l-----------------------~~~g~~~~sa~~~~gi~~l~~~l~~~~~~~ 278 (310)
|+|+.+..- ..+.+.+.+ ..+....+|+.+|.|+.++|..+-+...+.
T Consensus 190 K~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 190 KTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 999987421 112222222 233444589999999999998876655443
No 271
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.36 E-value=8.7e-12 Score=120.38 Aligned_cols=143 Identities=16% Similarity=0.125 Sum_probs=89.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCC-------------------------------CCCCceeeccceEeeCCCCCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTLG 151 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~-------------------------------~~~~tT~~~~~~~v~~~~~~~ 151 (310)
.+|+++|..++|||||+.+|+..-..+. ...+.|.+.....++..
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~---- 83 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP---- 83 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC----
Confidence 4699999999999999999975221110 11223433333222222
Q ss_pred CccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCc-------HHHHHHHHHHHHhcCCCCCCCC
Q 021615 152 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMYNPDYLERP 224 (310)
Q Consensus 152 ~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~-------~~~~~~~~~~l~~~~~~~~~~p 224 (310)
+..+.++||||+.++ .......+..+|++++|+|+..+.. .+..+. +..+.. .++|
T Consensus 84 ----~~~i~lIDtPGh~~f-------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh-~~~~~~-----~gi~ 146 (446)
T PTZ00141 84 ----KYYFTIIDAPGHRDF-------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREH-ALLAFT-----LGVK 146 (446)
T ss_pred ----CeEEEEEECCChHHH-------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHH-HHHHHH-----cCCC
Confidence 237899999998654 3455566788999999999987531 222222 233443 3666
Q ss_pred -EEEEEeCCCCCC---cHh----HHHHHHHHHHhcCC-------CccccCccCCHHH
Q 021615 225 -FIVVLNKIDLPE---ARD----RLQSLTEEILKIGC-------DKVTSETELSSED 266 (310)
Q Consensus 225 -~ivv~NK~Dl~~---~~~----~~~~l~~~l~~~g~-------~~~sa~~~~gi~~ 266 (310)
+|+++||+|... .++ ..+++.+.+...++ .++|+.+|.|+.+
T Consensus 147 ~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 147 QMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred eEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 678999999532 122 23445555555555 3479999999864
No 272
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.35 E-value=1.8e-11 Score=108.45 Aligned_cols=134 Identities=20% Similarity=0.180 Sum_probs=79.8
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccce-----------EeeCCC-CCC----------------
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-----------RLDGDP-TLG---------------- 151 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~-----------~v~~~~-~~~---------------- 151 (310)
-..+.|+++|+.|+||||++++|++...........|..|..- .+.... .+.
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 3567899999999999999999998742111111222222111 111000 000
Q ss_pred ---CccC-------------CCceEEEeCCCCCccccCC------chHHHHHHHHhh-hcCEEEEecccCCCCcHHHHHH
Q 021615 152 ---AEKY-------------SSEATLADLPGLIEGAHLG------KGLGRNFLRHLR-RTRLLVHVIDAAAENPVNDYRT 208 (310)
Q Consensus 152 ---~~~~-------------~~~~~i~DtPG~~~~~~~~------~~l~~~~~~~l~-~~d~il~VvD~s~~~~~~~~~~ 208 (310)
...+ ...++++||||+...+... ..+......+++ ..+++++|+|+......++...
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 0000 1468999999997542211 223344566676 4569999999876444444334
Q ss_pred HHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615 209 VKEELRMYNPDYLERPFIVVLNKIDLPEAR 238 (310)
Q Consensus 209 ~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~ 238 (310)
+.+.+.. .++|+++|+||+|..+..
T Consensus 184 ia~~ld~-----~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 184 LAKEVDP-----QGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHH-----cCCcEEEEEECCCCCCcc
Confidence 4455544 478999999999998653
No 273
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=7.2e-12 Score=106.43 Aligned_cols=118 Identities=28% Similarity=0.370 Sum_probs=83.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
..|.++|+.++|||+|+-.|+... ....+|+..|+.+.+..... ...++|.||+.+ +.+.+.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs---~~~TvtSiepn~a~~r~gs~--------~~~LVD~PGH~r-------lR~kl~ 100 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGS---HRGTVTSIEPNEATYRLGSE--------NVTLVDLPGHSR-------LRRKLL 100 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCC---ccCeeeeeccceeeEeecCc--------ceEEEeCCCcHH-------HHHHHH
Confidence 479999999999999999998663 12235677888888765432 579999999843 445555
Q ss_pred HHhh---hcCEEEEecccCC--CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615 183 RHLR---RTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR 238 (310)
Q Consensus 183 ~~l~---~~d~il~VvD~s~--~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~ 238 (310)
.++. .+.+++||||+.. ++..+..+.++..|..........|+++++||.|+..+.
T Consensus 101 e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk 161 (238)
T KOG0090|consen 101 EYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK 161 (238)
T ss_pred HHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence 5554 7999999999875 333344455555554432122457899999999998653
No 274
>PTZ00099 rab6; Provisional
Probab=99.35 E-value=4e-12 Score=107.85 Aligned_cols=111 Identities=12% Similarity=0.056 Sum_probs=81.3
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.+.||||||+.++.. ....+++.||++++|+|++++.+++....|..++..... ...|+++|+||+|+...
T Consensus 30 ~l~iwDt~G~e~~~~-------~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~--~~~piilVgNK~DL~~~ 100 (176)
T PTZ00099 30 RLQLWDTAGQERFRS-------LIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG--KDVIIALVGNKTDLGDL 100 (176)
T ss_pred EEEEEECCChHHhhh-------ccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccc
Confidence 789999999976532 223456799999999999998889988888887765432 36789999999999642
Q ss_pred Hh-HHHHHHHHHHhc--CCCccccCccCCHHHHHHHHhhccCC
Q 021615 238 RD-RLQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 238 ~~-~~~~l~~~l~~~--g~~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
.. ..++........ .+.++||+++.|+.++|..++..+.+
T Consensus 101 ~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 101 RKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 11 112222333333 35669999999999999999876644
No 275
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=9.3e-12 Score=101.57 Aligned_cols=121 Identities=25% Similarity=0.337 Sum_probs=87.1
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
.+...|++++|..|||||||++.|-..+..+ ...|.+|+...+..... +++.+|.-|+.. -.
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~q---hvPTlHPTSE~l~Ig~m--------~ftt~DLGGH~q-------Ar 78 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPTSEELSIGGM--------TFTTFDLGGHLQ-------AR 78 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccccc---cCCCcCCChHHheecCc--------eEEEEccccHHH-------HH
Confidence 3456689999999999999999998876433 23456665555544332 799999999843 34
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR 238 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~ 238 (310)
+.+..++..||+++|.||+.+.+.+...+.-.+.+-. ...+.+.|+++..||+|.+.+.
T Consensus 79 r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~-~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 79 RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLS-DESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHh-HHHHhcCcceeecccccCCCcc
Confidence 5677888999999999999987665544332222211 2234689999999999998763
No 276
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.32 E-value=1.8e-11 Score=114.24 Aligned_cols=125 Identities=24% Similarity=0.282 Sum_probs=83.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC----CCC-----------C-CCCCC---ceeeccc---eEeeCCCCCCCccCCCceE
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA----KPD-----------I-ADYPF---TTLMPNL---GRLDGDPTLGAEKYSSEAT 160 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~----~~~-----------i-~~~~~---tT~~~~~---~~v~~~~~~~~~~~~~~~~ 160 (310)
.-|+++|+.|+|||||+|+|++. +.. + .+.++ ||.+|.. ..+...+. ....-++.
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~---~~~~~~Vr 94 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININ---EGTKFKVR 94 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEecc---CCCcccEE
Confidence 45999999999999999999998 433 2 56777 7777765 33332211 11223799
Q ss_pred EEeCCCCCccccCCchHHHH----------------------HHHHhh-hcCEEEEec-ccCC-----CCcHHHHHHHHH
Q 021615 161 LADLPGLIEGAHLGKGLGRN----------------------FLRHLR-RTRLLVHVI-DAAA-----ENPVNDYRTVKE 211 (310)
Q Consensus 161 i~DtPG~~~~~~~~~~l~~~----------------------~~~~l~-~~d~il~Vv-D~s~-----~~~~~~~~~~~~ 211 (310)
++||+|+......+.--... ..+.+. ++|+.++|. |.+- ....+.-+.+.+
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999997643322111111 344455 899999999 8751 123334466778
Q ss_pred HHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 212 ELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 212 ~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
+|+. .++|+++|+||+|-.
T Consensus 175 eLk~-----~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 175 ELKE-----LNKPFIILLNSTHPY 193 (492)
T ss_pred HHHh-----cCCCEEEEEECcCCC
Confidence 8887 589999999999944
No 277
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.32 E-value=2.4e-11 Score=117.27 Aligned_cols=161 Identities=14% Similarity=0.158 Sum_probs=97.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEe---------------eCCCCC----------CCcc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRL---------------DGDPTL----------GAEK 154 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v---------------~~~~~~----------~~~~ 154 (310)
..|+++|.-..|||||+.+|++..... .-.-+.|++.-.... ...... ....
T Consensus 35 ~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (460)
T PTZ00327 35 INIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMT 114 (460)
T ss_pred EEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccccc
Confidence 569999999999999999999864311 111122221110000 000000 0001
Q ss_pred CCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCC-CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615 155 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 233 (310)
Q Consensus 155 ~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 233 (310)
+...+.++||||+.+ +.+.....+..+|++++|+|+..+ ...+..+.+ ..+... .-.++++|+||+|
T Consensus 115 ~~~~i~~IDtPGH~~-------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~l----gi~~iIVvlNKiD 182 (460)
T PTZ00327 115 LKRHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIM----KLKHIIILQNKID 182 (460)
T ss_pred ccceEeeeeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHc----CCCcEEEEEeccc
Confidence 123689999999843 344556667789999999999874 222222222 223322 1246899999999
Q ss_pred CCCcHh---HHHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhhcc
Q 021615 234 LPEARD---RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 234 l~~~~~---~~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+.+... ..+++.+.+.. ..+..+|+.++.|++.+++.|....
T Consensus 183 lv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 183 LVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred ccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 986432 23344444432 2455589999999999999987543
No 278
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.31 E-value=1.9e-12 Score=112.95 Aligned_cols=122 Identities=34% Similarity=0.523 Sum_probs=99.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
++|+++|+|.+|||||+..|++....++.|.|||.....|.+.+... ++++.|.||+++++..++|.+++..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~ga--------Kiqlldlpgiiegakdgkgrg~qvi 131 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGA--------KIQLLDLPGIIEGAKDGKGRGKQVI 131 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecccc--------ceeeecCcchhcccccCCCCccEEE
Confidence 47999999999999999999999988999999999888888766543 8999999999999999999999988
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 234 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 234 (310)
...+.|+++++|+|+-.+ ..+-+.+.+||+-+.-.+...|--+..-|-|.
T Consensus 132 avartcnli~~vld~~kp--~~hk~~ie~eleg~girlnk~pp~i~~kkKdk 181 (358)
T KOG1487|consen 132 AVARTCNLIFIVLDVLKP--LSHKKIIEKELEGFGIRLNKQPPNIGTKKKDK 181 (358)
T ss_pred EEeecccEEEEEeeccCc--ccHHHHHHHhhhcceeeccCCCCCcccccccc
Confidence 888899999999999854 44556677888876544444454444444444
No 279
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.30 E-value=2.2e-11 Score=106.38 Aligned_cols=125 Identities=19% Similarity=0.149 Sum_probs=74.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCC--CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~--~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
+|+|+|.+|+||||++|.|++....... ....|............ ..+.|+||||+.+.......+.+.+
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--------~~v~VIDTPGl~d~~~~~~~~~~~i 73 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--------RQVTVIDTPGLFDSDGSDEEIIREI 73 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--------EEEEEEE--SSEETTEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--------eEEEEEeCCCCCCCcccHHHHHHHH
Confidence 5899999999999999999998754322 22234333333322222 3799999999976544333333433
Q ss_pred HHH----hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615 182 LRH----LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR 238 (310)
Q Consensus 182 ~~~----l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~ 238 (310)
.+. ....+++++|++.. .-+..+...+......+.+.. .+.++||++..|.....
T Consensus 74 ~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 74 KRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDD 132 (212)
T ss_dssp HHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTT
T ss_pred HHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHH-HhHhhHHhhhccccccc
Confidence 332 34579999999988 344444444433333444332 46789999999876643
No 280
>PF01018 GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins []. These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis; and several others. Although the proteins contain GTP-binding motifs and are similar to each other, they do not share sequence similarity to other GTP-binding proteins, and have thus been classed as a novel group, the GTP1/OBG family. As yet, the functions of these proteins is uncertain, but they have been shown to be important in development and normal cell metabolism [, ].; GO: 0005525 GTP binding; PDB: 1LNZ_A 1UDX_A.
Probab=99.30 E-value=9.4e-13 Score=108.69 Aligned_cols=70 Identities=41% Similarity=0.688 Sum_probs=40.9
Q ss_pred cceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeeh
Q 021615 18 MHIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSL 95 (310)
Q Consensus 18 ~~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 95 (310)
+.|.| +||+|+| +++++++||.++++++++||||.||.||.+|.++. .+.|+.++.|++||++.+
T Consensus 84 l~i~VP~GT~V~~~~~~~~l~Dl~~~g~~~lvArGG~GG~GN~~f~s~~-------------~~~P~~~~~G~~Ge~~~l 150 (156)
T PF01018_consen 84 LIIKVPVGTVVYDADTGELLADLTEPGQRFLVARGGRGGLGNAHFKSST-------------NRAPRFATPGEPGEERKL 150 (156)
T ss_dssp EEEEE-TTEEEEETTT--EEEEE-STT-EEEEE--------GGGC-BTT-------------CSS--EEE------EEEE
T ss_pred cEeeecCCcEEEeeccccchheeecccceeEEecCCCCccccccccCCC-------------CCCCCccCCCCCceEEEE
Confidence 45566 8999999 78999999999999999999999999998876532 236788999999999999
Q ss_pred hhhhh
Q 021615 96 ELILR 100 (310)
Q Consensus 96 ~~~l~ 100 (310)
.||||
T Consensus 151 ~LELK 155 (156)
T PF01018_consen 151 ELELK 155 (156)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99987
No 281
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=4.9e-11 Score=108.79 Aligned_cols=148 Identities=20% Similarity=0.284 Sum_probs=97.3
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCC---CCCCCCCcee------eccceEeeCC-----CCCCCccC---------
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKP---DIADYPFTTL------MPNLGRLDGD-----PTLGAEKY--------- 155 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~---~i~~~~~tT~------~~~~~~v~~~-----~~~~~~~~--------- 155 (310)
...-+-|.++|+...||||+|+.|+..+. .+++.|.|.. .+..+.+++. +..+...+
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 34456799999999999999999998862 3355554432 2222222221 11111110
Q ss_pred -----------CCceEEEeCCCCCccccCCchHHHHH----HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCC
Q 021615 156 -----------SSEATLADLPGLIEGAHLGKGLGRNF----LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY 220 (310)
Q Consensus 156 -----------~~~~~i~DtPG~~~~~~~~~~l~~~~----~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~ 220 (310)
-.+++|+||||+.++..+....+..| ...+++||.|++++|+...+-..+++.+...|+-
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----- 209 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----- 209 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-----
Confidence 14689999999998876543333222 2335799999999999987777778878777775
Q ss_pred CCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc
Q 021615 221 LERPFIVVLNKIDLPEARDRLQSLTEEILKI 251 (310)
Q Consensus 221 ~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~ 251 (310)
.+-.+-||+||+|..+.++.+...-...+++
T Consensus 210 ~EdkiRVVLNKADqVdtqqLmRVyGALmWsl 240 (532)
T KOG1954|consen 210 HEDKIRVVLNKADQVDTQQLMRVYGALMWSL 240 (532)
T ss_pred CcceeEEEeccccccCHHHHHHHHHHHHHhh
Confidence 3567889999999998766444444444444
No 282
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.26 E-value=4.9e-11 Score=93.05 Aligned_cols=140 Identities=18% Similarity=0.169 Sum_probs=94.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.++++||..|+|||||++.|-|... +....-.+++.. =..+||||.-- +++.+-.+..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~---------lykKTQAve~~d----------~~~IDTPGEy~---~~~~~Y~aL~ 59 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT---------LYKKTQAVEFND----------KGDIDTPGEYF---EHPRWYHALI 59 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh---------hhcccceeeccC----------ccccCCchhhh---hhhHHHHHHH
Confidence 4699999999999999999999862 111111233211 13589999531 1122223344
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC---CCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g---~~~~sa~ 259 (310)
.....+|++++|-.+.++.+.-.-. .+ ....+|+|-|++|+|+.+. ..++..+++|.+.| +..+|+.
T Consensus 60 tt~~dadvi~~v~~and~~s~f~p~----f~-----~~~~k~vIgvVTK~DLaed-~dI~~~~~~L~eaGa~~IF~~s~~ 129 (148)
T COG4917 60 TTLQDADVIIYVHAANDPESRFPPG----FL-----DIGVKKVIGVVTKADLAED-ADISLVKRWLREAGAEPIFETSAV 129 (148)
T ss_pred HHhhccceeeeeecccCccccCCcc----cc-----cccccceEEEEecccccch-HhHHHHHHHHHHcCCcceEEEecc
Confidence 4457899999999888754321111 11 1135779999999999963 44677777777766 4448999
Q ss_pred ccCCHHHHHHHHhhc
Q 021615 260 TELSSEDAVKSLSTE 274 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~ 274 (310)
...|+++++++|...
T Consensus 130 d~~gv~~l~~~L~~~ 144 (148)
T COG4917 130 DNQGVEELVDYLASL 144 (148)
T ss_pred CcccHHHHHHHHHhh
Confidence 999999999998654
No 283
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.25 E-value=5.3e-11 Score=114.94 Aligned_cols=145 Identities=17% Similarity=0.144 Sum_probs=88.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCCCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTL 150 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~~~ 150 (310)
-.+|+++|..++|||||+-+|+..-..+ ...-+.|++.....+...
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~--- 83 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT--- 83 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC---
Confidence 3569999999999999999987422111 001122333222222211
Q ss_pred CCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcH------HHHHHHHHHHHhcCCCCCCCC
Q 021615 151 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLERP 224 (310)
Q Consensus 151 ~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~------~~~~~~~~~l~~~~~~~~~~p 224 (310)
+..++++||||+.++ .......+..+|++++|+|+...... .+....+..+.. .+.|
T Consensus 84 -----~~~i~liDtPGh~df-------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-----~gi~ 146 (447)
T PLN00043 84 -----KYYCTVIDAPGHRDF-------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-----LGVK 146 (447)
T ss_pred -----CEEEEEEECCCHHHH-------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-----cCCC
Confidence 237899999999655 33445567789999999999874210 122222222332 3564
Q ss_pred -EEEEEeCCCCCCc---H----hHHHHHHHHHHhcCC-------CccccCccCCHHH
Q 021615 225 -FIVVLNKIDLPEA---R----DRLQSLTEEILKIGC-------DKVTSETELSSED 266 (310)
Q Consensus 225 -~ivv~NK~Dl~~~---~----~~~~~l~~~l~~~g~-------~~~sa~~~~gi~~ 266 (310)
+++++||+|+.+. . +..+++...+.+.|+ .++|+.+|+|+.+
T Consensus 147 ~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 147 QMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 6889999998631 1 224455556665563 4579999998754
No 284
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.25 E-value=1.4e-10 Score=102.31 Aligned_cols=109 Identities=22% Similarity=0.311 Sum_probs=71.0
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCC--CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~--i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
....|+++|.+|+|||||++.|.+.... +....++ . ..+... ..++.++||||..
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i----~i~~~~--------~~~i~~vDtPg~~---------- 94 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I----TVVTGK--------KRRLTFIECPNDI---------- 94 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E----EEEecC--------CceEEEEeCCchH----------
Confidence 3456999999999999999999875311 1111111 0 011111 2378999999863
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCE-EEEEeCCCCCCcH
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLNKIDLPEAR 238 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~-ivv~NK~Dl~~~~ 238 (310)
...+..++.+|++++|+|++......+. .++..+.. .+.|. ++|+||+|+....
T Consensus 95 ~~~l~~ak~aDvVllviDa~~~~~~~~~-~i~~~l~~-----~g~p~vi~VvnK~D~~~~~ 149 (225)
T cd01882 95 NAMIDIAKVADLVLLLIDASFGFEMETF-EFLNILQV-----HGFPRVMGVLTHLDLFKKN 149 (225)
T ss_pred HHHHHHHHhcCEEEEEEecCcCCCHHHH-HHHHHHHH-----cCCCeEEEEEeccccCCcH
Confidence 2334566789999999999875554443 34455554 25675 4599999997543
No 285
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.24 E-value=5.8e-12 Score=111.77 Aligned_cols=110 Identities=23% Similarity=0.296 Sum_probs=56.5
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhh--cCEEEEecccCCCCcHHHH-HHHHHHHH-hcCCCCCCCCEEEEEeCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDY-RTVKEELR-MYNPDYLERPFIVVLNKID 233 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~--~d~il~VvD~s~~~~~~~~-~~~~~~l~-~~~~~~~~~p~ivv~NK~D 233 (310)
.+.++|||||++.... ......+.+.+.+ .-++++++|+........+ ..++-.+. .+. .+.|.+.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~---~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH-SDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR---LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHH-SHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH---HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEe-chhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh---CCCCEEEeeeccC
Confidence 6899999999986432 2233344455542 3478999998864433222 22222211 111 3789999999999
Q ss_pred CCCcH--h---------------------HHHHHHHHHHhc----CCCccccCccCCHHHHHHHH
Q 021615 234 LPEAR--D---------------------RLQSLTEEILKI----GCDKVTSETELSSEDAVKSL 271 (310)
Q Consensus 234 l~~~~--~---------------------~~~~l~~~l~~~----g~~~~sa~~~~gi~~l~~~l 271 (310)
+.+.. . ..+++.+.+... .+..+|+++++|+.+++..+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~i 232 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAI 232 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHH
Confidence 98721 0 011122222222 34457899999999888775
No 286
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.23 E-value=7.9e-11 Score=115.61 Aligned_cols=128 Identities=15% Similarity=0.074 Sum_probs=78.5
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCC-CCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC--
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADY-PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-- 174 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~-~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~-- 174 (310)
+....+|+|+|.+|+||||++|+|++.+.. +..+ +.||.. ........ +..+.|+||||+.+.....
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~id--------G~~L~VIDTPGL~dt~~dq~~ 185 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQ--------GVKIRVIDTPGLKSSASDQSK 185 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEEC--------CceEEEEECCCCCccccchHH
Confidence 444567999999999999999999998743 3443 455542 21111111 1279999999998763221
Q ss_pred -chHHHHHHHHhh--hcCEEEEecccCCCCc-HHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 175 -KGLGRNFLRHLR--RTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 175 -~~l~~~~~~~l~--~~d~il~VvD~s~~~~-~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
..+.......+. .+|++|||........ .++.. +.+.+...........+|||+++.|...
T Consensus 186 neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~-aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 186 NEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLP-LLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHH-HHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 223333333433 4799999987654322 23333 3344433322223578999999999875
No 287
>PTZ00416 elongation factor 2; Provisional
Probab=99.23 E-value=9.5e-11 Score=121.18 Aligned_cols=123 Identities=20% Similarity=0.147 Sum_probs=78.4
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCC---------------ceeeccceEeeCCCC--CCCccCCCceEE
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPF---------------TTLMPNLGRLDGDPT--LGAEKYSSEATL 161 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~---------------tT~~~~~~~v~~~~~--~~~~~~~~~~~i 161 (310)
..+.+|+++|..++|||||+++|+.....+ ....+ +|.......+.+... ......+..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 345689999999999999999998754322 11111 122211111211100 000001226899
Q ss_pred EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
+||||+.++. ......++.+|++++|+|+..+...++.. +++.+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~-------~~~~~al~~~D~ailVvda~~g~~~~t~~-~~~~~~~-----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFS-------SEVTAALRVTDGALVVVDCVEGVCVQTET-VLRQALQ-----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHH-------HHHHHHHhcCCeEEEEEECCCCcCccHHH-HHHHHHH-----cCCCEEEEEEChhhh
Confidence 9999997652 24456678899999999999866555543 4455554 368999999999997
No 288
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.22 E-value=8.5e-11 Score=121.70 Aligned_cols=121 Identities=19% Similarity=0.125 Sum_probs=79.0
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCC---------------ceeeccceEeeCCCC----------CCCc
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPF---------------TTLMPNLGRLDGDPT----------LGAE 153 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~---------------tT~~~~~~~v~~~~~----------~~~~ 153 (310)
..+.+|+++|..++|||||+.+|+.....+ ....+ .|.......+.+... ....
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 356789999999999999999998654322 11111 122222222222100 0001
Q ss_pred cCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615 154 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 233 (310)
Q Consensus 154 ~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 233 (310)
+..+.++||||+.++. ......++.+|++++|+|+..+...+....| +.+.. .++|+++++||+|
T Consensus 97 --~~~inliDtPGh~dF~-------~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~-----~~~p~i~~iNK~D 161 (843)
T PLN00116 97 --EYLINLIDSPGHVDFS-------SEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALG-----ERIRPVLTVNKMD 161 (843)
T ss_pred --ceEEEEECCCCHHHHH-------HHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHH-----CCCCEEEEEECCc
Confidence 2268999999997763 2445667889999999999987666554444 44443 3789999999999
Q ss_pred CC
Q 021615 234 LP 235 (310)
Q Consensus 234 l~ 235 (310)
+.
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 98
No 289
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.21 E-value=4.7e-11 Score=121.81 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=75.9
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC----------CCC------CCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------ADY------PFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i----------~~~------~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D 163 (310)
..+.+|+++|..++|||||+++|+.....+ .++ .++|+........... ... +..+.++|
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~--~~~--~~~i~liD 92 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEY--EGN--EYLINLID 92 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEee--cCC--ceEEEEEe
Confidence 346789999999999999999997532111 011 1223322221111100 111 12789999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
|||+.++. ......+..+|++++|+|+......++...| ..+.. .+.|.++|+||+|+..
T Consensus 93 TPG~~~f~-------~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~-----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 93 TPGHVDFG-------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK-----ENVKPVLFINKVDRLI 152 (720)
T ss_pred CCCccccH-------HHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH-----cCCCEEEEEEChhccc
Confidence 99997752 2345677899999999999875444443333 33333 3578899999999974
No 290
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.21 E-value=8.6e-11 Score=112.74 Aligned_cols=155 Identities=15% Similarity=0.218 Sum_probs=106.4
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCC--CCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAK--PDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~--~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
.-.+|+++|..|+|||||+-+|+..+ ..+ ...+..|+.+. +..+ . ....++||.--.+.
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPad---vtPe------~--vpt~ivD~ss~~~~------- 69 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPAD---VTPE------N--VPTSIVDTSSDSDD------- 69 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCc---cCcC------c--CceEEEecccccch-------
Confidence 34579999999999999999999876 223 22233333211 1111 1 15799999843322
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-----HHHHHHHHHHhc
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLTEEILKI 251 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----~~~~l~~~l~~~ 251 (310)
.......++++|++.+|++.+++.+.+.+ ..|+-.++.......+.|+|+|+||+|...... ....+...+.+.
T Consensus 70 ~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei 149 (625)
T KOG1707|consen 70 RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI 149 (625)
T ss_pred hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH
Confidence 12345678899999999999987777766 456677776554456899999999999976432 244455555443
Q ss_pred -CCCccccCccCCHHHHHHHHhh
Q 021615 252 -GCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 252 -g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
.+.++||++..++.++|...-.
T Consensus 150 EtciecSA~~~~n~~e~fYyaqK 172 (625)
T KOG1707|consen 150 ETCIECSALTLANVSELFYYAQK 172 (625)
T ss_pred HHHHhhhhhhhhhhHhhhhhhhh
Confidence 4667899999999999987543
No 291
>PRK12740 elongation factor G; Reviewed
Probab=99.15 E-value=4.1e-10 Score=114.39 Aligned_cols=109 Identities=25% Similarity=0.216 Sum_probs=72.1
Q ss_pred EcCCCCcHHHHHHHHHcCCCCC---CC---------------CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCc
Q 021615 108 VGLPNAGKSTLLAAITHAKPDI---AD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 169 (310)
Q Consensus 108 vG~~naGKSSLln~L~~~~~~i---~~---------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~ 169 (310)
+|.+|+|||||+++|+.....+ ++ ..+.|.......+.+. +..+.+|||||+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--------~~~i~liDtPG~~~ 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--------GHKINLIDTPGHVD 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--------CEEEEEEECCCcHH
Confidence 5999999999999996543221 11 1122222222233222 12799999999965
Q ss_pred cccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 170 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 170 ~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
+ ...+...+..+|++++|+|++......... ++..+.. .++|+++|+||+|+...
T Consensus 73 ~-------~~~~~~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~-----~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 73 F-------TGEVERALRVLDGAVVVVCAVGGVEPQTET-VWRQAEK-----YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred H-------HHHHHHHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH-----cCCCEEEEEECCCCCCC
Confidence 3 234456678899999999999876555443 3344443 36899999999999754
No 292
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=3.9e-10 Score=113.26 Aligned_cols=120 Identities=27% Similarity=0.243 Sum_probs=84.1
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCC---------------CceeeccceEeeCCCCCCCccCCCceE
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYP---------------FTTLMPNLGRLDGDPTLGAEKYSSEAT 160 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~---------------~tT~~~~~~~v~~~~~~~~~~~~~~~~ 160 (310)
+..+.+|+++|+-.+|||||..+|+-....+ +... +.|+......+.... +..++
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-------~~~iN 79 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-------DYRIN 79 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-------ceEEE
Confidence 4566789999999999999999997443222 1111 122222222222221 12899
Q ss_pred EEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615 161 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR 238 (310)
Q Consensus 161 i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~ 238 (310)
++||||+.++.. ...+.++-+|+++.|+|+......+.. .+|+....| ++|.++++||+|+..++
T Consensus 80 lIDTPGHVDFt~-------EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~~-----~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 80 LIDTPGHVDFTI-------EVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADKY-----GVPRILFVNKMDRLGAD 144 (697)
T ss_pred EeCCCCccccHH-------HHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhhc-----CCCeEEEEECccccccC
Confidence 999999999844 456778899999999999987766654 455555554 79999999999998763
No 293
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.2e-10 Score=93.01 Aligned_cols=153 Identities=17% Similarity=0.153 Sum_probs=97.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.++.++|.-|+||+|++-++--.+.- .. -.|...+...+++... ++++||.-|+.. +..-|.
T Consensus 19 ~rililgldGaGkttIlyrlqvgevv-tt--kPtigfnve~v~yKNL--------k~~vwdLggqtS-------irPyWR 80 (182)
T KOG0072|consen 19 MRILILGLDGAGKTTILYRLQVGEVV-TT--KPTIGFNVETVPYKNL--------KFQVWDLGGQTS-------IRPYWR 80 (182)
T ss_pred eEEEEeeccCCCeeEEEEEcccCccc-cc--CCCCCcCccccccccc--------cceeeEccCccc-------ccHHHH
Confidence 45899999999999999887644311 11 1122223334444322 899999999843 334555
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHH----HHHHh--cCCCc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLT----EEILK--IGCDK 255 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~----~~l~~--~g~~~ 255 (310)
.++...|.++||||.++.+....... +...|.+ +++.+..+++++||.|.......-+.+. ..++. ..+..
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E--~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~ 158 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQE--EELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVK 158 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhcc--HhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEe
Confidence 66789999999999998654433221 1122221 2334567889999999876532211111 12222 34556
Q ss_pred cccCccCCHHHHHHHHhhcc
Q 021615 256 VTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~ 275 (310)
.||..|.|+++.+++|....
T Consensus 159 tSA~kg~Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 159 TSAVKGEGLDPAMDWLQRPL 178 (182)
T ss_pred eccccccCCcHHHHHHHHHH
Confidence 89999999999999987654
No 294
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=5.2e-10 Score=103.91 Aligned_cols=146 Identities=21% Similarity=0.227 Sum_probs=88.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCCCCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTLG 151 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~~~~ 151 (310)
.+++++|...+|||||+-+|+-.-..+ ..+-+.|.+.....++.+
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~---- 83 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD---- 83 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC----
Confidence 468999999999999999996331111 112223333322223222
Q ss_pred CccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-------cHHHHHHHHHHHHhcCCCCCCCC
Q 021615 152 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYLERP 224 (310)
Q Consensus 152 ~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-------~~~~~~~~~~~l~~~~~~~~~~p 224 (310)
. ..++|+|+||+.++ ......-+.+||+.++|||+...+ .-+..+.+ .|.... .-..
T Consensus 84 --k--~~~tIiDaPGHrdF-------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~--~La~tl---Gi~~ 147 (428)
T COG5256 84 --K--YNFTIIDAPGHRDF-------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA--FLARTL---GIKQ 147 (428)
T ss_pred --C--ceEEEeeCCchHHH-------HHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH--HHHHhc---CCce
Confidence 1 26999999997554 233344457899999999998752 11222211 222221 1356
Q ss_pred EEEEEeCCCCCC-cHhHHHHHHHHHH----hcCC-------CccccCccCCHHHHH
Q 021615 225 FIVVLNKIDLPE-ARDRLQSLTEEIL----KIGC-------DKVTSETELSSEDAV 268 (310)
Q Consensus 225 ~ivv~NK~Dl~~-~~~~~~~l~~~l~----~~g~-------~~~sa~~~~gi~~l~ 268 (310)
+||++||+|..+ .+++++++...+. .+|+ .++|+..|+++.+.-
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 899999999985 3345555554443 3444 447999998877654
No 295
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.10 E-value=3e-10 Score=116.16 Aligned_cols=120 Identities=16% Similarity=0.170 Sum_probs=76.6
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC-CC---------------CceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-YP---------------FTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~-~~---------------~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D 163 (310)
..+.+|+++|..++|||||+.+|+.....+.. .. +.|+......+.+. +... +..+.++|
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~--~~~~--~~~i~liD 93 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHE--YEGK--EYLINLID 93 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEE--ecCC--cEEEEEEc
Confidence 45678999999999999999999864322211 00 12222222222110 0101 12689999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
|||+.++. ....+.+..+|++++|+|+......+....| ..+.. .+.|.++++||+|+..
T Consensus 94 tPG~~df~-------~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~-----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 94 TPGHVDFG-------GDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALR-----ERVKPVLFINKVDRLI 153 (731)
T ss_pred CCCccChH-------HHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHH-----cCCCeEEEEECchhhc
Confidence 99997752 3445667889999999999876554444444 33333 2568899999999863
No 296
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.09 E-value=1.4e-09 Score=113.37 Aligned_cols=147 Identities=21% Similarity=0.165 Sum_probs=93.4
Q ss_pred cHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC----------CCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 114 GKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----------GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 114 GKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~----------~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
+||||+.+|.+.+.......+.|++.-...++..... ....-...+.+|||||+..+.. ...+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~-------lr~~ 545 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTS-------LRKR 545 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHH-------HHHh
Confidence 4999999999998766777788886655555433110 0000012589999999865421 1123
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-----------------hHHHHH--
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-----------------DRLQSL-- 244 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-----------------~~~~~l-- 244 (310)
.+..+|++++|+|+++....+..+.+ ..+.. .++|+++|+||+|+.... ....++
T Consensus 546 g~~~aDivlLVVDa~~Gi~~qT~e~I-~~lk~-----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~ 619 (1049)
T PRK14845 546 GGSLADLAVLVVDINEGFKPQTIEAI-NILRQ-----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI 619 (1049)
T ss_pred hcccCCEEEEEEECcccCCHhHHHHH-HHHHH-----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 35679999999999875444444433 34443 368999999999996321 011111
Q ss_pred -----HHHHHhcCC-----------------CccccCccCCHHHHHHHHhh
Q 021615 245 -----TEEILKIGC-----------------DKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 245 -----~~~l~~~g~-----------------~~~sa~~~~gi~~l~~~l~~ 273 (310)
...|...|+ .++||++|+|+.++...+..
T Consensus 620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 112333332 33899999999999987753
No 297
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.08 E-value=7.6e-10 Score=100.59 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=76.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCC--CCC--------ceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIAD--YPF--------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 172 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~--~~~--------tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~ 172 (310)
++|.|+|.+|+|||||+|.|++....... .+. .++......+... .....+.++||||+.+...
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~------~~~l~LtiiDTpGfGd~i~ 78 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEEN------GVKLNLTIIDTPGFGDNID 78 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEET------CEEEEEEEEEEC-CSSSST
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccC------CcceEEEEEeCCCcccccc
Confidence 57999999999999999999987633321 111 1112111122111 1123789999999976533
Q ss_pred CC-------chHHHHHHHHh-------------hhcCEEEEecccCCC-CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 021615 173 LG-------KGLGRNFLRHL-------------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNK 231 (310)
Q Consensus 173 ~~-------~~l~~~~~~~l-------------~~~d~il~VvD~s~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK 231 (310)
.. ..+..+|..++ .+.|+++|+++++.. -...+++ .++.|.. ..++|-|+.|
T Consensus 79 n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~-~mk~Ls~------~vNvIPvIaK 151 (281)
T PF00735_consen 79 NSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE-FMKRLSK------RVNVIPVIAK 151 (281)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH-HHHHHTT------TSEEEEEEST
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH-HHHHhcc------cccEEeEEec
Confidence 21 11223333333 256999999998753 3344554 3456653 5789999999
Q ss_pred CCCCCcHhH---HHHHHHHHHhcCCC
Q 021615 232 IDLPEARDR---LQSLTEEILKIGCD 254 (310)
Q Consensus 232 ~Dl~~~~~~---~~~l~~~l~~~g~~ 254 (310)
+|.....+. ...+.+.+...++.
T Consensus 152 aD~lt~~el~~~k~~i~~~l~~~~I~ 177 (281)
T PF00735_consen 152 ADTLTPEELQAFKQRIREDLEENNIK 177 (281)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHTT--
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCce
Confidence 999986542 23344444444443
No 298
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.07 E-value=3.5e-10 Score=105.65 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=81.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCC---CCCC--CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKP---DIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 175 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~---~i~~--~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~ 175 (310)
...+|+|+|.+|+|||||||+|.|-.. ..++ ...||..+..+..+.. ..+.+||.||+......
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~---------pnv~lWDlPG~gt~~f~-- 102 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF---------PNVTLWDLPGIGTPNFP-- 102 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS----------TTEEEEEE--GGGSS----
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC---------CCCeEEeCCCCCCCCCC--
Confidence 445899999999999999999976321 1122 2245665555444322 26899999998643221
Q ss_pred hHHHHHHHH--hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC-C-----------cHhHH
Q 021615 176 GLGRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP-E-----------ARDRL 241 (310)
Q Consensus 176 ~l~~~~~~~--l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~-~-----------~~~~~ 241 (310)
...++.. +.+.|.++++.+.. .+..+.. +..++.. .++|+.+|.+|+|.. . .+..+
T Consensus 103 --~~~Yl~~~~~~~yD~fiii~s~r--f~~ndv~-La~~i~~-----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L 172 (376)
T PF05049_consen 103 --PEEYLKEVKFYRYDFFIIISSER--FTENDVQ-LAKEIQR-----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLL 172 (376)
T ss_dssp --HHHHHHHTTGGG-SEEEEEESSS----HHHHH-HHHHHHH-----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHH
T ss_pred --HHHHHHHccccccCEEEEEeCCC--CchhhHH-HHHHHHH-----cCCcEEEEEecccccHhhhhccCCcccCHHHHH
Confidence 2233333 57889888876533 3334433 4566766 489999999999961 1 11222
Q ss_pred HH----HHHHHHhcCCCc-----cccCcc--CCHHHHHHHHhhccCC
Q 021615 242 QS----LTEEILKIGCDK-----VTSETE--LSSEDAVKSLSTEGGE 277 (310)
Q Consensus 242 ~~----l~~~l~~~g~~~-----~sa~~~--~gi~~l~~~l~~~~~~ 277 (310)
+. +.+.|.+.++.. +|...- ..+..+.+.|...+..
T Consensus 173 ~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 173 QEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp HHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred HHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 33 344455555443 444433 3466666666655543
No 299
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.06 E-value=1.9e-09 Score=99.85 Aligned_cols=97 Identities=9% Similarity=0.108 Sum_probs=62.2
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.+.|+||+|...... .....||++++|++...++..+. +...+- +..-++|+||+|+...
T Consensus 150 d~viieT~Gv~qs~~----------~i~~~aD~vlvv~~p~~gd~iq~---~k~gi~-------E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 150 DVILVETVGVGQSET----------AVAGMVDFFLLLQLPGAGDELQG---IKKGIM-------ELADLIVINKADGDNK 209 (332)
T ss_pred CEEEEECCCCccchh----------HHHHhCCEEEEEecCCchHHHHH---HHhhhh-------hhhheEEeehhcccch
Confidence 789999999974421 12457999999987444443332 222111 2334899999998864
Q ss_pred H---hHHHHHHHHHHhc---------CCCccccCccCCHHHHHHHHhhc
Q 021615 238 R---DRLQSLTEEILKI---------GCDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 238 ~---~~~~~l~~~l~~~---------g~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
. ....++...+... .+..+|+.++.|++++++.+...
T Consensus 210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~ 258 (332)
T PRK09435 210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDH 258 (332)
T ss_pred hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3 2334444444421 23348999999999999988764
No 300
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.05 E-value=3e-10 Score=95.93 Aligned_cols=56 Identities=32% Similarity=0.552 Sum_probs=45.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 167 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~ 167 (310)
...+|+++|.||+|||||+|+|++.+. .+++.|++|...+...+. ..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-----------~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-----------KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-----------CCEEEEECcCC
Confidence 346899999999999999999999876 458999999875544431 26899999996
No 301
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.00 E-value=3.8e-09 Score=99.18 Aligned_cols=128 Identities=20% Similarity=0.276 Sum_probs=84.6
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCC------C----------CCCCCceeeccceEeeCCCCCCCccCCCceEEEeC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPD------I----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~------i----------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~Dt 164 (310)
.+.+|+++-.-.-|||||+..|+..... + ...-+.|+-..-..+.+.. .++.|+||
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~--------~~INIvDT 75 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG--------TRINIVDT 75 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC--------eEEEEecC
Confidence 4567999999999999999999865311 1 1123344432222333332 28999999
Q ss_pred CCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHH
Q 021615 165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQ 242 (310)
Q Consensus 165 PG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~ 242 (310)
||+-++-. ...+-+.-.|.++++||+.+....+.--.+.+.|.. +.+-|+|+||+|++.+. +..+
T Consensus 76 PGHADFGG-------EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~------gL~PIVVvNKiDrp~Arp~~Vvd 142 (603)
T COG1217 76 PGHADFGG-------EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL------GLKPIVVINKIDRPDARPDEVVD 142 (603)
T ss_pred CCcCCccc-------hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc------CCCcEEEEeCCCCCCCCHHHHHH
Confidence 99987632 333445578999999999997666655455566653 55668889999998763 2334
Q ss_pred HHHHHHH
Q 021615 243 SLTEEIL 249 (310)
Q Consensus 243 ~l~~~l~ 249 (310)
+..+.+-
T Consensus 143 ~vfDLf~ 149 (603)
T COG1217 143 EVFDLFV 149 (603)
T ss_pred HHHHHHH
Confidence 4444443
No 302
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.99 E-value=7e-10 Score=92.14 Aligned_cols=54 Identities=31% Similarity=0.485 Sum_probs=42.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 167 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~ 167 (310)
.+|+++|.||||||||+|+|.+... .+++.+++|........ ...+.++||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-----------MKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-----------CCCEEEEECcCC
Confidence 4689999999999999999999765 45889999986443221 125899999995
No 303
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=4.6e-09 Score=103.10 Aligned_cols=159 Identities=22% Similarity=0.228 Sum_probs=102.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC------C---CCccC-CCceEEEeCCCCCccc
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT------L---GAEKY-SSEATLADLPGLIEGA 171 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~------~---~~~~~-~~~~~i~DtPG~~~~~ 171 (310)
.+-++|+|.-.+|||-|+..|.+.++.-+.+.+.|.......++.... + ....+ -+.+.++||||+..+.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 466899999999999999999998876677777776432222221100 0 00001 1368999999998774
Q ss_pred cCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc--------------
Q 021615 172 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-------------- 237 (310)
Q Consensus 172 ~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~-------------- 237 (310)
.+ .. +-...||++|+|+|+..+-..+.++.+ +.|+. .+.|+||.+||+|++-.
T Consensus 555 nl----Rs---rgsslC~~aIlvvdImhGlepqtiESi-~lLR~-----rktpFivALNKiDRLYgwk~~p~~~i~~~lk 621 (1064)
T KOG1144|consen 555 NL----RS---RGSSLCDLAILVVDIMHGLEPQTIESI-NLLRM-----RKTPFIVALNKIDRLYGWKSCPNAPIVEALK 621 (1064)
T ss_pred hh----hh---ccccccceEEEEeehhccCCcchhHHH-HHHHh-----cCCCeEEeehhhhhhcccccCCCchHHHHHH
Confidence 42 11 223479999999999886555555544 33443 47899999999998631
Q ss_pred ---Hh-------HHHHHHHHHHhcC-----------------CCccccCccCCHHHHHHHHhh
Q 021615 238 ---RD-------RLQSLTEEILKIG-----------------CDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 238 ---~~-------~~~~l~~~l~~~g-----------------~~~~sa~~~~gi~~l~~~l~~ 273 (310)
.. ++..+.-.|...| +.++||.+|+|+.+++.+|..
T Consensus 622 kQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ 684 (1064)
T KOG1144|consen 622 KQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQ 684 (1064)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHH
Confidence 01 1222222232222 334799999999999988654
No 304
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.95 E-value=4.8e-09 Score=96.47 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=61.1
Q ss_pred CceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
..+.|+||||..... ...+..+|.++++.+.... +++......+ .++|.++|+||+|+..
T Consensus 127 ~D~viidT~G~~~~e----------~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-------~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 127 YDVIIVETVGVGQSE----------VDIANMADTFVVVTIPGTG---DDLQGIKAGL-------MEIADIYVVNKADGEG 186 (300)
T ss_pred CCEEEEeCCCCchhh----------hHHHHhhceEEEEecCCcc---HHHHHHHHHH-------hhhccEEEEEcccccc
Confidence 378999999975321 1234568888888654432 3333332223 3688899999999986
Q ss_pred cHhHH---HHHH---HHH-Hh---c--CCCccccCccCCHHHHHHHHhhcc
Q 021615 237 ARDRL---QSLT---EEI-LK---I--GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 237 ~~~~~---~~l~---~~l-~~---~--g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
..+.. ..+. ..+ .. . .+..+|++++.|+++++..+....
T Consensus 187 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 187 ATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 54211 1111 111 11 1 244589999999999999887653
No 305
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.93 E-value=1.6e-08 Score=92.99 Aligned_cols=146 Identities=17% Similarity=0.162 Sum_probs=84.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCC----CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc---
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIA----DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--- 175 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~----~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~--- 175 (310)
+.|.++|++|.|||||+|.|++....-. +.......+.+-.......+....+.-.++++||||+.++.....
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we 103 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWE 103 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHH
Confidence 5799999999999999999998732111 111111111111111111111112233799999999988644321
Q ss_pred ----hHHHHHHHHh--------------hhcCEEEEecccCC-CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 176 ----GLGRNFLRHL--------------RRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 176 ----~l~~~~~~~l--------------~~~d~il~VvD~s~-~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
.+..+|..++ .+.++++|.+-.+. .-..-+++.+ +.|.. .+.+|-|+.|+|...
T Consensus 104 ~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~M-k~ls~------~vNlIPVI~KaD~lT 176 (373)
T COG5019 104 PIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAM-KRLSK------RVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHH-HHHhc------ccCeeeeeeccccCC
Confidence 2233333333 25699999998765 3334455443 45553 467899999999998
Q ss_pred cHhH---HHHHHHHHHhcCCCc
Q 021615 237 ARDR---LQSLTEEILKIGCDK 255 (310)
Q Consensus 237 ~~~~---~~~l~~~l~~~g~~~ 255 (310)
.++. .+.+++.+....+..
T Consensus 177 ~~El~~~K~~I~~~i~~~nI~v 198 (373)
T COG5019 177 DDELAEFKERIREDLEQYNIPV 198 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCce
Confidence 7542 234444555544443
No 306
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=1.6e-08 Score=87.75 Aligned_cols=141 Identities=21% Similarity=0.246 Sum_probs=80.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCC-------C-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPD-------I-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 174 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~-------i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~ 174 (310)
++|.+||.+|.|||||+|.|+.++.. . .++|.||..-....+-.. .+.+ -+++++||||+.+.....
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE---~gVk--lkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEE---KGVK--LKLTVIDTPGFGDQINND 121 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeee---cceE--EEEEEecCCCcccccCcc
Confidence 57999999999999999999876421 1 245555432222222111 1112 278999999998754322
Q ss_pred c-------hHHHHHHHHh--------------hhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 021615 175 K-------GLGRNFLRHL--------------RRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKI 232 (310)
Q Consensus 175 ~-------~l~~~~~~~l--------------~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~ 232 (310)
. .+..++.+++ .+.++++|.+..+... ..-+++.+ +.|.+ -..++-|+-|+
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDiefl-krLt~------vvNvvPVIaka 194 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFL-KRLTE------VVNVVPVIAKA 194 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHH-HHHhh------hheeeeeEeec
Confidence 1 2223332332 2468899999887632 22233322 33332 24578889999
Q ss_pred CCCCcHhH---HHHHHHHHHhcCCCc
Q 021615 233 DLPEARDR---LQSLTEEILKIGCDK 255 (310)
Q Consensus 233 Dl~~~~~~---~~~l~~~l~~~g~~~ 255 (310)
|-..-++. .+.+.+.+...++..
T Consensus 195 DtlTleEr~~FkqrI~~el~~~~i~v 220 (336)
T KOG1547|consen 195 DTLTLEERSAFKQRIRKELEKHGIDV 220 (336)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCccc
Confidence 98765432 234455555555543
No 307
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.91 E-value=2.4e-09 Score=91.77 Aligned_cols=55 Identities=36% Similarity=0.363 Sum_probs=44.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCC---------CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAK---------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 167 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~---------~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~ 167 (310)
..+++++|.||+|||||+|+|.+.. +.++..|+||..+....+.. .+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-----------~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-----------GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-----------CCEEEeCcCC
Confidence 3579999999999999999999753 34578899999877655521 5799999996
No 308
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=7.6e-10 Score=92.38 Aligned_cols=160 Identities=14% Similarity=0.166 Sum_probs=104.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCce-eeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT-~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
..++++++|..+.||||++++..-.+..- .|+.|+ ...+. +......+ . -+|.+|||.|++.......
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~-~y~at~Gv~~~p--l~f~tn~g--~--irf~~wdtagqEk~gglrd---- 77 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEK-TYPATLGVEVHP--LLFDTNRG--Q--IRFNVWDTAGQEKKGGLRD---- 77 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhccccee-cccCcceeEEee--eeeecccC--c--EEEEeeecccceeeccccc----
Confidence 46789999999999999999987554222 111111 11111 11111111 1 2789999999987632211
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHH-HHHHhcCCCcccc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLT-EEILKIGCDKVTS 258 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~-~~l~~~g~~~~sa 258 (310)
. .++ ...+.++++|..+..+......|.+.+..... +.|+++++||.|........+.+. -.-..+...++|+
T Consensus 78 g--yyI-~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~---NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSa 151 (216)
T KOG0096|consen 78 G--YYI-QGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE---NIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISA 151 (216)
T ss_pred c--cEE-ecceeEEEeeeeehhhhhcchHHHHHHHHHhc---CCCeeeeccceeccccccccccceeeecccceeEEeec
Confidence 1 122 35677888999998888888888888877553 589999999999876531111110 1112456777999
Q ss_pred CccCCHHHHHHHHhhccCC
Q 021615 259 ETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~~~ 277 (310)
+...+++..|-+|+....-
T Consensus 152 ksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 152 KSNYNFERPFLWLARKLTG 170 (216)
T ss_pred ccccccccchHHHhhhhcC
Confidence 9999999999999887654
No 309
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.91 E-value=1.6e-09 Score=100.34 Aligned_cols=59 Identities=37% Similarity=0.455 Sum_probs=48.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 171 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~ 171 (310)
..+|++||.||||||||||+|.+.... ++++|++|...+...+. ..+.++||||++-..
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-----------~~i~LlDtPGii~~~ 191 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-----------DGIYLLDTPGIIPPK 191 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-----------CCeEEecCCCcCCCC
Confidence 356999999999999999999999864 49999999976655442 268999999997653
No 310
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=8.7e-09 Score=96.22 Aligned_cols=131 Identities=22% Similarity=0.254 Sum_probs=85.3
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC---------CCCCCce-------------eeccceEeeCCCCCCCccC
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---------ADYPFTT-------------LMPNLGRLDGDPTLGAEKY 155 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i---------~~~~~tT-------------~~~~~~~v~~~~~~~~~~~ 155 (310)
+...-.+.+||-.|-||||||...|+-.-..| ....+++ .....-++++.+
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~------- 80 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD------- 80 (528)
T ss_pred HHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC-------
Confidence 34445669999999999999999875221111 1111122 111222233332
Q ss_pred CCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
..+++.||||+.+++. ..++.+..+|.+|+|+|+..+...+..+ +.+..+. .+.|++-++||+|+.
T Consensus 81 -~~iNLLDTPGHeDFSE-------DTYRtLtAvDsAvMVIDaAKGiE~qT~K-LfeVcrl-----R~iPI~TFiNKlDR~ 146 (528)
T COG4108 81 -CLVNLLDTPGHEDFSE-------DTYRTLTAVDSAVMVIDAAKGIEPQTLK-LFEVCRL-----RDIPIFTFINKLDRE 146 (528)
T ss_pred -eEEeccCCCCccccch-------hHHHHHHhhheeeEEEecccCccHHHHH-HHHHHhh-----cCCceEEEeeccccc
Confidence 2789999999988743 5667788899999999999876666544 3333332 589999999999997
Q ss_pred CcH--hHHHHHHHHHH
Q 021615 236 EAR--DRLQSLTEEIL 249 (310)
Q Consensus 236 ~~~--~~~~~l~~~l~ 249 (310)
..+ +.++++.+.|.
T Consensus 147 ~rdP~ELLdEiE~~L~ 162 (528)
T COG4108 147 GRDPLELLDEIEEELG 162 (528)
T ss_pred cCChHHHHHHHHHHhC
Confidence 653 34455554443
No 311
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.88 E-value=5.5e-09 Score=95.47 Aligned_cols=61 Identities=26% Similarity=0.350 Sum_probs=49.0
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 172 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~ 172 (310)
...+|+++|.||||||||+|+|++.+. .+++.|++|.......+ . ..+.++||||+.....
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~--~---------~~~~l~DtPGi~~~~~ 181 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL--G---------KGLELLDTPGILWPKL 181 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe--C---------CcEEEEECCCcCCCCC
Confidence 346799999999999999999999875 56899999998654332 1 2689999999976543
No 312
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.85 E-value=5.5e-09 Score=86.59 Aligned_cols=56 Identities=32% Similarity=0.534 Sum_probs=45.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 167 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~ 167 (310)
...+++++|.||+|||||+|+|++... .+++.++||..+....+. ..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-----------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-----------CCEEEEECCCC
Confidence 456799999999999999999998774 468889999987654432 26899999996
No 313
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=8.1e-08 Score=87.37 Aligned_cols=159 Identities=22% Similarity=0.292 Sum_probs=99.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCC-------CCCCCCceeeccceEeeCC--CCC-CCccCCCceEEEeCCCCCcccc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPD-------IADYPFTTLMPNLGRLDGD--PTL-GAEKYSSEATLADLPGLIEGAH 172 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~-------i~~~~~tT~~~~~~~v~~~--~~~-~~~~~~~~~~i~DtPG~~~~~~ 172 (310)
.+++++|.-.+|||||.++|+..... .+...+.|++--...+... ..+ ....+ .+.++|+||+
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~l--q~tlvDCPGH----- 80 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQL--QFTLVDCPGH----- 80 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccc--eeEEEeCCCc-----
Confidence 57999999999999999999754211 1222334443333222211 111 11222 6899999998
Q ss_pred CCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHH-HHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHH----HH
Q 021615 173 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVK-EELRMYNPDYLERPFIVVLNKIDLPEARD---RLQ----SL 244 (310)
Q Consensus 173 ~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~-~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~----~l 244 (310)
.++.+.......-.|+.++|+|+......+..+.+. .++ .-+..++|+||+|...+.. .++ .+
T Consensus 81 --asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-------~c~klvvvinkid~lpE~qr~ski~k~~kk~ 151 (522)
T KOG0461|consen 81 --ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-------LCKKLVVVINKIDVLPENQRASKIEKSAKKV 151 (522)
T ss_pred --HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-------hccceEEEEeccccccchhhhhHHHHHHHHH
Confidence 566666666666679999999998765555444332 222 2466789999999876522 222 33
Q ss_pred HHHHHhcCC------CccccCcc----CCHHHHHHHHhhccCC
Q 021615 245 TEEILKIGC------DKVTSETE----LSSEDAVKSLSTEGGE 277 (310)
Q Consensus 245 ~~~l~~~g~------~~~sa~~~----~gi~~l~~~l~~~~~~ 277 (310)
++-++..++ .++|+..| +++.++...|.+..-+
T Consensus 152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 344444443 34789999 7788888777655433
No 314
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.84 E-value=5.9e-09 Score=89.87 Aligned_cols=122 Identities=20% Similarity=0.170 Sum_probs=85.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.||.++|.+|+||||+-..++....+- ...++.|++...+.+.+-+. --+.+||+.|+..+ -+.+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-------l~LnlwDcGgqe~f-------men~ 70 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-------LVLNLWDCGGQEEF-------MENY 70 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-------heeehhccCCcHHH-------HHHH
Confidence 579999999999999988887554322 44567777766666544332 15789999998643 1122
Q ss_pred HH-----HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615 182 LR-----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR 238 (310)
Q Consensus 182 ~~-----~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~ 238 (310)
++ -++..++++||+|++..+...++....+.|+.+...-....+.+.+.|+|+....
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 22 2467899999999998777777766666555444333467789999999998653
No 315
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.84 E-value=1.7e-08 Score=91.97 Aligned_cols=148 Identities=17% Similarity=0.176 Sum_probs=88.5
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-----------CC----------------------CCCceeeccceEeeC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----------AD----------------------YPFTTLMPNLGRLDG 146 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-----------~~----------------------~~~tT~~~~~~~v~~ 146 (310)
+.+.++.-+|.---||||||-+|+.....+ +. ..+.|++.....+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 445668889999999999999997542111 00 112222221111111
Q ss_pred CCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEE
Q 021615 147 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI 226 (310)
Q Consensus 147 ~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~i 226 (310)
. .++|+|+||||+.++ .+.+..-...||+.+++||+......+..+. ..+... +.=+.++
T Consensus 84 ~--------KRkFIiADTPGHeQY-------TRNMaTGASTadlAIlLVDAR~Gvl~QTrRH--s~I~sL---LGIrhvv 143 (431)
T COG2895 84 E--------KRKFIIADTPGHEQY-------TRNMATGASTADLAILLVDARKGVLEQTRRH--SFIASL---LGIRHVV 143 (431)
T ss_pred c--------cceEEEecCCcHHHH-------hhhhhcccccccEEEEEEecchhhHHHhHHH--HHHHHH---hCCcEEE
Confidence 1 358999999999543 3344444578999999999976543333221 112211 0135688
Q ss_pred EEEeCCCCCCc-HhHHHHHHHHH----HhcCC-----CccccCccCCHHHH
Q 021615 227 VVLNKIDLPEA-RDRLQSLTEEI----LKIGC-----DKVTSETELSSEDA 267 (310)
Q Consensus 227 vv~NK~Dl~~~-~~~~~~l~~~l----~~~g~-----~~~sa~~~~gi~~l 267 (310)
+.+||+|+.+- ++..+++...+ .++++ .++||..|+++...
T Consensus 144 vAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~ 194 (431)
T COG2895 144 VAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSK 194 (431)
T ss_pred EEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccccc
Confidence 99999999873 34455555443 34443 34788888876544
No 316
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.83 E-value=6.4e-09 Score=84.84 Aligned_cols=54 Identities=39% Similarity=0.545 Sum_probs=42.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 168 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~ 168 (310)
+++++|.+|+|||||+|+|.+.+. .++..+++|.......+ + ..+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--T---------PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--C---------CCEEEEECCCcC
Confidence 799999999999999999998874 45777777776543333 1 258999999985
No 317
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=7.6e-08 Score=90.31 Aligned_cols=151 Identities=20% Similarity=0.107 Sum_probs=105.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
-|+..|.---|||||+.++++..... ...-++|.+......+... ..+.++|+||+.++ ...
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--------~~~~fIDvpgh~~~-------i~~ 66 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--------GVMGFIDVPGHPDF-------ISN 66 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--------CceEEeeCCCcHHH-------HHH
Confidence 37788999999999999999886443 3355777765554443322 26899999999654 335
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHHHHHHHHHH-----hcCCC
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQSLTEEIL-----KIGCD 254 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~l~~~l~-----~~g~~ 254 (310)
....+...|..++|||+.+.-..+..+.+ ..|..+ +.+ .++|+||+|+.+.....+.+.+.+. ...+.
T Consensus 67 miag~~~~d~alLvV~~deGl~~qtgEhL-~iLdll-----gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~ 140 (447)
T COG3276 67 LLAGLGGIDYALLVVAADEGLMAQTGEHL-LILDLL-----GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIF 140 (447)
T ss_pred HHhhhcCCceEEEEEeCccCcchhhHHHH-HHHHhc-----CCCceEEEEeccccccHHHHHHHHHHHHhhccccccccc
Confidence 55666778999999999876666655544 345543 444 5999999999975432222222222 34556
Q ss_pred ccccCccCCHHHHHHHHhhcc
Q 021615 255 KVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+|+.+++|++++-+.+....
T Consensus 141 ~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 141 KTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred ccccccCCCHHHHHHHHHHhh
Confidence 689999999999999876655
No 318
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.83 E-value=9e-09 Score=93.52 Aligned_cols=58 Identities=29% Similarity=0.410 Sum_probs=47.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCC-CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 170 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~-~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~ 170 (310)
..+|+++|.||+|||||+|+|++.. ..+++.|++|..+....+ . ..+.++||||+...
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~---------~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL--S---------DGLELLDTPGILWP 176 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe--C---------CCEEEEECCCcccC
Confidence 4679999999999999999999887 455889999987654333 1 26899999999654
No 319
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.79 E-value=5.8e-08 Score=84.44 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=84.3
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCC---CC--C-CCCCCceeecc--------ceEeeCCC--CCC----------Cc
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAK---PD--I-ADYPFTTLMPN--------LGRLDGDP--TLG----------AE 153 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~---~~--i-~~~~~tT~~~~--------~~~v~~~~--~~~----------~~ 153 (310)
...+.|+++|++|+|||||+++++... .. + ...++.+.+.. ...+.... ... ..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 356789999999999999999997541 11 1 11111111110 00010000 000 00
Q ss_pred cCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615 154 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 233 (310)
Q Consensus 154 ~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 233 (310)
..+..+.+++|.|...... .+ . ...+..+.|+|+.+.+... ...... ...|.++++||+|
T Consensus 100 ~~~~d~IiIEt~G~l~~~~-------~~-~--~~~~~~i~Vvd~~~~d~~~-----~~~~~~-----~~~a~iiv~NK~D 159 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCPA-------DF-D--LGEHMRVVLLSVTEGDDKP-----LKYPGM-----FKEADLIVINKAD 159 (207)
T ss_pred cCCCCEEEEecCCCcCCCc-------cc-c--cccCeEEEEEecCcccchh-----hhhHhH-----HhhCCEEEEEHHH
Confidence 0023678899988322111 11 1 1245556788887543211 111111 2578899999999
Q ss_pred CCCcH-hHHHHHHHHHHh----cCCCccccCccCCHHHHHHHHhh
Q 021615 234 LPEAR-DRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 234 l~~~~-~~~~~l~~~l~~----~g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
+.+.. .....+.+.+.+ ..+..+|++++.|++++++.+..
T Consensus 160 l~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~ 204 (207)
T TIGR00073 160 LAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEG 204 (207)
T ss_pred ccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 97532 123344444443 34566899999999999999754
No 320
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.79 E-value=2.8e-10 Score=94.64 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=106.6
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
-+.++.|+|+-++||||++.+.+....... | -.|+ +-....+..++ .. .-++++||+.|+.++-.+..
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~-y-RAtIgvdfalkVl~wdd----~t-~vRlqLwdIagQerfg~mtr--- 93 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYH-Y-RATIGVDFALKVLQWDD----KT-IVRLQLWDIAGQERFGNMTR--- 93 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHH-H-HHHHhHHHHHHHhccCh----HH-HHHHHHhcchhhhhhcceEE---
Confidence 457899999999999999999875431100 0 0011 11111111111 00 02688999999986643211
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCcH-----hHHHHHHHHHHhc
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEAR-----DRLQSLTEEILKI 251 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~--~~~~~~p~ivv~NK~Dl~~~~-----~~~~~l~~~l~~~ 251 (310)
-+.+.+.+..+|+|.++..+++....|.+++..-. +.-.-.|+++..||||..... .....+.+.-.-.
T Consensus 94 ----Vyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~ 169 (229)
T KOG4423|consen 94 ----VYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE 169 (229)
T ss_pred ----EEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc
Confidence 23457899999999999999998888988876432 222346789999999987532 1223333333334
Q ss_pred CCCccccCccCCHHHHHHHHhhccCCc
Q 021615 252 GCDKVTSETELSSEDAVKSLSTEGGEA 278 (310)
Q Consensus 252 g~~~~sa~~~~gi~~l~~~l~~~~~~~ 278 (310)
|+.++|+++..++++....|.+.....
T Consensus 170 gwtets~Kenkni~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 170 GWTETSAKENKNIPEAQRELVEKILVN 196 (229)
T ss_pred ceeeeccccccChhHHHHHHHHHHHhh
Confidence 788899999999999999887765443
No 321
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.79 E-value=1.2e-08 Score=96.22 Aligned_cols=118 Identities=20% Similarity=0.243 Sum_probs=69.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCC------CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 175 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~------~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~ 175 (310)
..+|.+||.+|||||||+|+|++.. ..++++|+||+......+. ..+.++||||+........
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-----------~~~~l~DtPG~~~~~~~~~ 222 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-----------DGHSLYDTPGIINSHQMAH 222 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-----------CCCEEEECCCCCChhHhhh
Confidence 4589999999999999999999854 3458899999976644431 1568999999976421111
Q ss_pred hHHHHHHHHh---hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 176 GLGRNFLRHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 176 ~l~~~~~~~l---~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
-+...-+..+ .......+.+|....-....+..+ ..+. . ....+.+.++|.+...
T Consensus 223 ~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~-d~~~----~-~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 223 YLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARF-DYLK----G-EKTSFTFYVSNELNIH 280 (360)
T ss_pred hcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEE-EEec----C-CceEEEEEccCCceeE
Confidence 1111112222 334667777776542222111111 0111 0 2345677777777654
No 322
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=4.7e-08 Score=94.24 Aligned_cols=148 Identities=21% Similarity=0.246 Sum_probs=87.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCC---------------CCC--CC--------------CCceeeccceEeeCCCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKP---------------DIA--DY--------------PFTTLMPNLGRLDGDPT 149 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~---------------~i~--~~--------------~~tT~~~~~~~v~~~~~ 149 (310)
.....+++|..++|||||+-+|+-.-. ..+ .+ .+.|.+.....++..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~-- 253 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK-- 253 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC--
Confidence 445689999999999999999863210 011 11 111222111112211
Q ss_pred CCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC------cHHHHHHHHHHHHhcCCCCCCC
Q 021615 150 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLER 223 (310)
Q Consensus 150 ~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~------~~~~~~~~~~~l~~~~~~~~~~ 223 (310)
...++|+|+||+-++-. ....-...+|+.++|+|++... +..+.+.....|+.+ .-.
T Consensus 254 ------~~~~tliDaPGhkdFi~-------nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L----gi~ 316 (603)
T KOG0458|consen 254 ------SKIVTLIDAPGHKDFIP-------NMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL----GIS 316 (603)
T ss_pred ------ceeEEEecCCCccccch-------hhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc----Ccc
Confidence 23789999999766532 3334456799999999998632 112222222233332 135
Q ss_pred CEEEEEeCCCCCC-cHhHHHHHHHHHH-----hc-------CCCccccCccCCHHHH
Q 021615 224 PFIVVLNKIDLPE-ARDRLQSLTEEIL-----KI-------GCDKVTSETELSSEDA 267 (310)
Q Consensus 224 p~ivv~NK~Dl~~-~~~~~~~l~~~l~-----~~-------g~~~~sa~~~~gi~~l 267 (310)
.++|++||+|+.+ .+++++++...+. .+ .|.++|...|+|+...
T Consensus 317 qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 317 QLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred eEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 6899999999985 3455665555443 33 4555889999887654
No 323
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.78 E-value=1.1e-08 Score=90.51 Aligned_cols=96 Identities=15% Similarity=0.191 Sum_probs=63.6
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.++|+.|.|..... ..-..-||.+++|+-....+..+.++.=.-|+ .=++|+||+|+..+
T Consensus 123 D~IiiETVGvGQsE----------~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi----------aDi~vVNKaD~~gA 182 (266)
T PF03308_consen 123 DVIIIETVGVGQSE----------VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI----------ADIFVVNKADRPGA 182 (266)
T ss_dssp SEEEEEEESSSTHH----------HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-----------SEEEEE--SHHHH
T ss_pred CEEEEeCCCCCccH----------HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh----------ccEEEEeCCChHHH
Confidence 57888888875431 23345789999999888777665544322222 33899999998777
Q ss_pred HhHHHHHHHHHHhc-----C----CCccccCccCCHHHHHHHHhh
Q 021615 238 RDRLQSLTEEILKI-----G----CDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 238 ~~~~~~l~~~l~~~-----g----~~~~sa~~~~gi~~l~~~l~~ 273 (310)
+....++...+.-. + +..+|+..+.|++++.+.+.+
T Consensus 183 ~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 183 DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 66666777666532 1 222799999999999988755
No 324
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=7.4e-08 Score=86.94 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=100.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC------------CCCCCceeec--c-----ceEeeCCCC--CCCccCCCceEE
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI------------ADYPFTTLMP--N-----LGRLDGDPT--LGAEKYSSEATL 161 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i------------~~~~~tT~~~--~-----~~~v~~~~~--~~~~~~~~~~~i 161 (310)
.+|++||.-.-|||||..+|+|-.... -.|.-+++.. . .......+. -....+-+.+.+
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSf 90 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSF 90 (415)
T ss_pred eEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEE
Confidence 579999999999999999999853111 1121111100 0 000000000 000022357899
Q ss_pred EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--
Q 021615 162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-- 239 (310)
Q Consensus 162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-- 239 (310)
+|.||++ -+-..+++-..--|+.++|++++.+.+..+-..-+-.|... .-+.+++|-||+|+...+.
T Consensus 91 VDaPGHe-------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi----gik~iiIvQNKIDlV~~E~Al 159 (415)
T COG5257 91 VDAPGHE-------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII----GIKNIIIVQNKIDLVSRERAL 159 (415)
T ss_pred eeCCchH-------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh----ccceEEEEecccceecHHHHH
Confidence 9999984 22223344334458999999998855433333222334432 2367899999999997643
Q ss_pred -HHHHHHHHHH-----hcCCCccccCccCCHHHHHHHHhhccCCc
Q 021615 240 -RLQSLTEEIL-----KIGCDKVTSETELSSEDAVKSLSTEGGEA 278 (310)
Q Consensus 240 -~~~~l~~~l~-----~~g~~~~sa~~~~gi~~l~~~l~~~~~~~ 278 (310)
..++++++++ ...+.++||..+.+++.+++++....-..
T Consensus 160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 4455555554 33566799999999999999988766443
No 325
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=8.9e-08 Score=88.59 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=77.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC-------CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC-
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI-------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG- 174 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i-------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~- 174 (310)
+.+.++|.+|.|||||+|.|+.....- ...+..|.......+...+ ..+.-.++++||||+.+.....
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee----~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEE----NGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecC----CCeEEeeEEeccCCCcccccccc
Confidence 579999999999999999999873211 1111112222111221111 1222378999999998753321
Q ss_pred ------chHHHHHHHHh-------------hhcCEEEEecccCCC-CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615 175 ------KGLGRNFLRHL-------------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 234 (310)
Q Consensus 175 ------~~l~~~~~~~l-------------~~~d~il~VvD~s~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 234 (310)
..+..+|..++ .+.++++|.+..... -..-++..+ +.+.. .+.+|-|+-|+|.
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~M-k~l~~------~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFM-KKLSK------KVNLIPVIAKADT 170 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHH-HHHhc------cccccceeecccc
Confidence 22334444443 267999999998764 334444433 44442 5788999999999
Q ss_pred CCcHh
Q 021615 235 PEARD 239 (310)
Q Consensus 235 ~~~~~ 239 (310)
....+
T Consensus 171 lT~~E 175 (366)
T KOG2655|consen 171 LTKDE 175 (366)
T ss_pred CCHHH
Confidence 98755
No 326
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.9e-08 Score=97.96 Aligned_cols=119 Identities=28% Similarity=0.365 Sum_probs=80.6
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCC-CCC-----CCCCCceeec-----------cceEeeCCCCCCCccCCCceEEEe
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAK-PDI-----ADYPFTTLMP-----------NLGRLDGDPTLGAEKYSSEATLAD 163 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~-~~i-----~~~~~tT~~~-----------~~~~v~~~~~~~~~~~~~~~~i~D 163 (310)
.+..|+++|+-.+|||+|+..|.... +.. .+.-+|+... +..++-... ..+. ..-++++|
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D-~~~K--S~l~nilD 203 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSD-SKGK--SYLMNILD 203 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEec-CcCc--eeeeeeec
Confidence 45679999999999999999998653 111 2222222211 111111111 1111 22689999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
|||+..+.. .....++.+|++++|+|+.+...+..-+.+...+.. +.|+.+|+||+|++
T Consensus 204 TPGHVnF~D-------E~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~------~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 204 TPGHVNFSD-------ETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN------RLPIVVVINKVDRL 262 (971)
T ss_pred CCCcccchH-------HHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc------cCcEEEEEehhHHH
Confidence 999987743 445667789999999999998888776666666653 78999999999975
No 327
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.73 E-value=1.8e-07 Score=83.94 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=63.3
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.++|+.|.|..... ..-..-+|.+++|.=....+..+-++.=.-| .-=++|+||.|+..+
T Consensus 145 DvIIVETVGvGQse----------v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE----------iaDi~vINKaD~~~A 204 (323)
T COG1703 145 DVIIVETVGVGQSE----------VDIANMADTFLVVMIPGAGDDLQGIKAGIME----------IADIIVINKADRKGA 204 (323)
T ss_pred CEEEEEecCCCcch----------hHHhhhcceEEEEecCCCCcHHHHHHhhhhh----------hhheeeEeccChhhH
Confidence 57888888875431 1223468999998877767766554432222 333899999998877
Q ss_pred HhHHHHHHHHHHhc-------CCC----ccccCccCCHHHHHHHHhh
Q 021615 238 RDRLQSLTEEILKI-------GCD----KVTSETELSSEDAVKSLST 273 (310)
Q Consensus 238 ~~~~~~l~~~l~~~-------g~~----~~sa~~~~gi~~l~~~l~~ 273 (310)
+....++...+... +|. .+++..++|+.++++.+..
T Consensus 205 ~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~ 251 (323)
T COG1703 205 EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIED 251 (323)
T ss_pred HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHH
Confidence 55455555444422 232 3899999999999987654
No 328
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.1e-07 Score=84.97 Aligned_cols=133 Identities=22% Similarity=0.252 Sum_probs=87.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCC-----------CC-----CCCCCceeeccceEeeCCCCCCCccCCCceEEEeC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKP-----------DI-----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~-----------~i-----~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~Dt 164 (310)
.-.+|+.+|.-+-|||||..+|+..-. .+ ...-+.|+.+....++.. ++.+..+|+
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~--------~rhyahVDc 82 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA--------NRHYAHVDC 82 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC--------CceEEeccC
Confidence 345799999999999999999974311 01 112345554444333332 236889999
Q ss_pred CCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHH--
Q 021615 165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL-- 241 (310)
Q Consensus 165 PG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~-- 241 (310)
||+-++ .+....-..+.|..|+|+.+.+....+..+.++ |.+. .+.| +++++||+|+.+..+.+
T Consensus 83 PGHaDY-------vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--larq----vGvp~ivvflnK~Dmvdd~ellel 149 (394)
T COG0050 83 PGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LARQ----VGVPYIVVFLNKVDMVDDEELLEL 149 (394)
T ss_pred CChHHH-------HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhhh----cCCcEEEEEEecccccCcHHHHHH
Confidence 999554 334444456789999999999866555544332 2111 3676 66788999999865543
Q ss_pred --HHHHHHHHhcCCC
Q 021615 242 --QSLTEEILKIGCD 254 (310)
Q Consensus 242 --~~l~~~l~~~g~~ 254 (310)
.++++.|..++++
T Consensus 150 VemEvreLLs~y~f~ 164 (394)
T COG0050 150 VEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHHHHHHHHcCCC
Confidence 3566677778877
No 329
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.72 E-value=9.5e-09 Score=97.66 Aligned_cols=60 Identities=33% Similarity=0.429 Sum_probs=48.8
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCC-CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 170 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~-~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~ 170 (310)
+....||+||+|||||||+||+|.|.+ +.++..|+.|.+.+...+. ..+.+.|+||++=.
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-----------~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-----------PSVCLCDCPGLVFP 372 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-----------CCceecCCCCcccc
Confidence 335789999999999999999999987 5669999999876654443 26899999998743
No 330
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.70 E-value=3.2e-08 Score=83.38 Aligned_cols=55 Identities=29% Similarity=0.385 Sum_probs=44.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 167 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~ 167 (310)
..+++++|.+|+|||||+|+|.+... .+++.+++|.......+. ..+.++||||+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-----------~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-----------PGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-----------CCEEEEECCCC
Confidence 46899999999999999999998764 457888899876554432 16899999997
No 331
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.69 E-value=1.1e-07 Score=83.83 Aligned_cols=92 Identities=20% Similarity=0.018 Sum_probs=58.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC--CCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA--KPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~--~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
..-|+++|++++|||||+|.|++. ...+ .....||............ .. ...+.++||||+.+..... ...
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~---~~--~~~v~~lDteG~~~~~~~~-~~~ 80 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL---GK--EHAVLLLDTEGTDGRERGE-FED 80 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC---CC--cceEEEEecCCcCccccCc-hhh
Confidence 345899999999999999999998 5444 3445666644433332210 00 1379999999998653321 011
Q ss_pred HHHHHHhh--hcCEEEEecccCC
Q 021615 179 RNFLRHLR--RTRLLVHVIDAAA 199 (310)
Q Consensus 179 ~~~~~~l~--~~d~il~VvD~s~ 199 (310)
...+..+. -+++++|.++...
T Consensus 81 ~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 81 DARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred hhHHHHHHHHHhCEEEEeccCcc
Confidence 22223333 3899999998865
No 332
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.69 E-value=2.4e-08 Score=80.83 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=98.8
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
..+|+++|.+..|||||+-...+..... ....+.........+... .-.+.+||.-|+.++..+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t--------~IsfSIwdlgG~~~~~n~------ 85 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGT--------DISFSIWDLGGQREFINM------ 85 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecce--------EEEEEEEecCCcHhhhcc------
Confidence 3579999999999999999988765321 000000000001111111 116899999998654221
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc--HhHHHHHHH---HH-H--hc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA--RDRLQSLTE---EI-L--KI 251 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~l~~---~l-~--~~ 251 (310)
.--....+-+++|++|.+++.+...+..|.++.+.+.. ...| |+|++|-|..-. .+..+.+.. .. + +.
T Consensus 86 -lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk--tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA 161 (205)
T KOG1673|consen 86 -LPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK--TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNA 161 (205)
T ss_pred -CceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC--ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 10112456789999999999999999999988876643 4566 567999987421 111122221 11 1 34
Q ss_pred CCCccccCccCCHHHHHHHHhhcc
Q 021615 252 GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 252 g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+..+|+....++...|..+.+..
T Consensus 162 sL~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 162 SLFFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred cEEEeeccccccHHHHHHHHHHHH
Confidence 677799999999999998876654
No 333
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.67 E-value=1.2e-07 Score=84.11 Aligned_cols=157 Identities=18% Similarity=0.139 Sum_probs=92.0
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc---ccC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG---AHL 173 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~---~~~ 173 (310)
...+.++++|.+|+|||||+|.++..+... ...++-|...+...+ +..+.++|.||+... ...
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-----------~~~~~~vDlPG~~~a~y~~~~ 202 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-----------GKSWYEVDLPGYGRAGYGFEL 202 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-----------cceEEEEecCCcccccCCccC
Confidence 345789999999999999999999775322 225555554444333 237999999994321 001
Q ss_pred Cch---HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-----HHHHHH
Q 021615 174 GKG---LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-----RLQSLT 245 (310)
Q Consensus 174 ~~~---l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----~~~~l~ 245 (310)
.+. +...++-.-+.--.+.+++|++.+...-+...+ +.+.+ .++|+.+|+||||...... ....+.
T Consensus 203 ~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i-~~~ge-----~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~ 276 (320)
T KOG2486|consen 203 PADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEI-AWLGE-----NNVPMTSVFTKCDKQKKVKRTGKKPGLNIK 276 (320)
T ss_pred cchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHH-HHHhh-----cCCCeEEeeehhhhhhhccccccCccccce
Confidence 122 223332222333445677888875444333322 33444 4799999999999864311 011111
Q ss_pred HHHH---------hcCCCccccCccCCHHHHHHHHhh
Q 021615 246 EEIL---------KIGCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 246 ~~l~---------~~g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
..+. .+.|..+|+-+..|+..+.-.++.
T Consensus 277 ~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 277 INFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred eehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 1111 234556888888888887765543
No 334
>PRK13796 GTPase YqeH; Provisional
Probab=98.66 E-value=2.6e-08 Score=94.00 Aligned_cols=58 Identities=38% Similarity=0.418 Sum_probs=44.3
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCC------CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 170 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~------~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~ 170 (310)
..++.+||.||||||||+|+|.+.. ..+++.|+||+......+. ....++||||+...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~-----------~~~~l~DTPGi~~~ 223 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD-----------DGSFLYDTPGIIHR 223 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC-----------CCcEEEECCCcccc
Confidence 3579999999999999999998542 2348899999976543331 14589999999743
No 335
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.66 E-value=2.7e-07 Score=79.78 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=59.1
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
..++++|.|..-. ..+ ... -+|.++.|+|+.+....... ....+ ...-++++||+|+.+.
T Consensus 93 D~iiIEt~G~~l~----~~~----~~~--l~~~~i~vvD~~~~~~~~~~--~~~qi--------~~ad~~~~~k~d~~~~ 152 (199)
T TIGR00101 93 EMVFIESGGDNLS----ATF----SPE--LADLTIFVIDVAAGDKIPRK--GGPGI--------TRSDLLVINKIDLAPM 152 (199)
T ss_pred CEEEEECCCCCcc----ccc----chh--hhCcEEEEEEcchhhhhhhh--hHhHh--------hhccEEEEEhhhcccc
Confidence 5678888884211 111 111 25789999999865442210 11111 2223889999999852
Q ss_pred -HhHHHHHHHHHHh----cCCCccccCccCCHHHHHHHHhhcc
Q 021615 238 -RDRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 238 -~~~~~~l~~~l~~----~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
....+.+.+.++. ..+..+|++++.|++++++++....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 153 VGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred ccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 1223344444443 3566699999999999999987543
No 336
>PRK12288 GTPase RsgA; Reviewed
Probab=98.58 E-value=8.8e-08 Score=89.59 Aligned_cols=67 Identities=25% Similarity=0.277 Sum_probs=44.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC-CCCCCC-------CceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC-
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKP-DIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG- 174 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~-~i~~~~-------~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~- 174 (310)
.++|+|.||||||||+|+|++... .+++.+ .||.......+.. ...++||||+.+..-..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-----------~~~liDTPGir~~~l~~~ 275 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-----------GGDLIDSPGVREFGLWHL 275 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-----------CCEEEECCCCCcccCCCC
Confidence 479999999999999999998753 233333 2565544444421 34699999998764422
Q ss_pred --chHHHHH
Q 021615 175 --KGLGRNF 181 (310)
Q Consensus 175 --~~l~~~~ 181 (310)
.++...|
T Consensus 276 ~~~~l~~~F 284 (347)
T PRK12288 276 EPEQVTQGF 284 (347)
T ss_pred CHHHHHHhh
Confidence 3455444
No 337
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.56 E-value=1.4e-07 Score=78.02 Aligned_cols=55 Identities=33% Similarity=0.485 Sum_probs=40.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 167 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~ 167 (310)
..+++++|.+|+|||||+|+|.+.... +++.+++|........ + ..+.+|||||+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~--~---------~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI--T---------SKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc--C---------CCEEEEECcCC
Confidence 457999999999999999999976543 3667777754332211 1 26899999995
No 338
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.54 E-value=4.1e-08 Score=88.96 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=38.0
Q ss_pred CCCEEEEEeCCCCCCc-HhHHHHHHHHHHhc----CCCccccCccCCHHHHHHHHhh
Q 021615 222 ERPFIVVLNKIDLPEA-RDRLQSLTEEILKI----GCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 222 ~~p~ivv~NK~Dl~~~-~~~~~~l~~~l~~~----g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
..+-++|+||+|+.+. ....+.+.+.+..+ .+..+|++++.|+++++.+|..
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4677999999999863 22344555555443 4556899999999999999865
No 339
>PRK12289 GTPase RsgA; Reviewed
Probab=98.52 E-value=1.1e-07 Score=88.93 Aligned_cols=57 Identities=25% Similarity=0.230 Sum_probs=41.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC-CCCCCCCC-------ceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAK-PDIADYPF-------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 171 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~-~~i~~~~~-------tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~ 171 (310)
.++|+|+||||||||+|+|.+.. ..++..+. ||.......++. ...++||||+.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-----------g~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-----------GGLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-----------CcEEEeCCCccccc
Confidence 47999999999999999999765 33455555 666554433321 24799999997653
No 340
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.1e-06 Score=84.45 Aligned_cols=139 Identities=22% Similarity=0.251 Sum_probs=83.0
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceee-----ccce---Ee--------------e-------CCC--
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLM-----PNLG---RL--------------D-------GDP-- 148 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~-----~~~~---~v--------------~-------~~~-- 148 (310)
+.-.||++.|.+++||||++|+++..+.-.+....||-. -..| .. . .+.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 566899999999999999999999876444333333310 0000 00 0 000
Q ss_pred --------CCCCc---cCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcC
Q 021615 149 --------TLGAE---KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN 217 (310)
Q Consensus 149 --------~~~~~---~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~ 217 (310)
.|++. -+...+.++|.||+.-. ..+.....++...+|++|||+.+.+..+....+.+. ...
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~----se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~-~vs--- 258 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD----SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFH-KVS--- 258 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCc----hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHH-Hhh---
Confidence 00110 01236889999999754 334455667778999999999998765554433332 222
Q ss_pred CCCCCCC-EEEEEeCCCCCCcH-hHHHHHHHHHH
Q 021615 218 PDYLERP-FIVVLNKIDLPEAR-DRLQSLTEEIL 249 (310)
Q Consensus 218 ~~~~~~p-~ivv~NK~Dl~~~~-~~~~~l~~~l~ 249 (310)
.++| +.++.||.|...++ +..+.+.+.+.
T Consensus 259 ---~~KpniFIlnnkwDasase~ec~e~V~~Qi~ 289 (749)
T KOG0448|consen 259 ---EEKPNIFILNNKWDASASEPECKEDVLKQIH 289 (749)
T ss_pred ---ccCCcEEEEechhhhhcccHHHHHHHHHHHH
Confidence 1355 56677888987653 34445554443
No 341
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.46 E-value=3.8e-07 Score=75.93 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=40.5
Q ss_pred CceEEEeCCCCCccccCCchHHHH-----HHHHhhhcCEEEEecccCCCCc-HHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 021615 157 SEATLADLPGLIEGAHLGKGLGRN-----FLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLN 230 (310)
Q Consensus 157 ~~~~i~DtPG~~~~~~~~~~l~~~-----~~~~l~~~d~il~VvD~s~~~~-~~~~~~~~~~l~~~~~~~~~~p~ivv~N 230 (310)
....++||||..+... +... .+....+.|.+++|+|+..... ......+..++.. -=++|+|
T Consensus 87 ~d~I~IEt~G~~~p~~----~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~--------ad~ivln 154 (158)
T cd03112 87 FDRIVIETTGLADPGP----VAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF--------ADRILLN 154 (158)
T ss_pred CCEEEEECCCcCCHHH----HHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH--------CCEEEEe
Confidence 4679999999976522 2222 2233456899999999875221 1122334455543 1267899
Q ss_pred CCCC
Q 021615 231 KIDL 234 (310)
Q Consensus 231 K~Dl 234 (310)
|+|+
T Consensus 155 k~dl 158 (158)
T cd03112 155 KTDL 158 (158)
T ss_pred cccC
Confidence 9996
No 342
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.45 E-value=1e-06 Score=78.74 Aligned_cols=85 Identities=20% Similarity=0.185 Sum_probs=64.6
Q ss_pred HhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC--CccccCc
Q 021615 184 HLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKVTSET 260 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~--~~~sa~~ 260 (310)
++.++|.+++|+|+.++. ++..+..|+..+.. .+.|.++|+||+|+.+..+...+..+.+...++ ..+|+++
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAkt 107 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKN 107 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 456899999999999766 67777777766653 468999999999997644433344455555554 4589999
Q ss_pred cCCHHHHHHHHhh
Q 021615 261 ELSSEDAVKSLST 273 (310)
Q Consensus 261 ~~gi~~l~~~l~~ 273 (310)
+.|++++|..+..
T Consensus 108 g~gi~eLf~~l~~ 120 (245)
T TIGR00157 108 QDGLKELIEALQN 120 (245)
T ss_pred chhHHHHHhhhcC
Confidence 9999999998764
No 343
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.45 E-value=2.1e-07 Score=83.16 Aligned_cols=57 Identities=26% Similarity=0.285 Sum_probs=39.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCC-CCCC-------CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKP-DIAD-------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 171 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~-~i~~-------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~ 171 (310)
..++++|.||||||||+|+|.+... .+++ ...||.......+ . ...++||||+.+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~----------~~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H----------GGLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C----------CcEEEeCCCccccC
Confidence 3689999999999999999998642 2222 2336665544333 1 24899999998754
No 344
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.44 E-value=1.7e-07 Score=77.87 Aligned_cols=58 Identities=26% Similarity=0.283 Sum_probs=35.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCC-C---CCC----CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKP-D---IAD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 171 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~-~---i~~----~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~ 171 (310)
..++++|++|||||||+|+|.+... . ++. --.||.......++ ....|+||||+.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~-----------~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP-----------DGGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET-----------TSEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC-----------CCcEEEECCCCCccc
Confidence 6799999999999999999998741 1 111 12244433333331 156899999997653
No 345
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=4.4e-07 Score=87.93 Aligned_cols=120 Identities=24% Similarity=0.253 Sum_probs=82.8
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCC---CCC---------------CCCceeeccceEeeCCCCCCCccCCCce
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD---IAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEA 159 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~---i~~---------------~~~tT~~~~~~~v~~~~~~~~~~~~~~~ 159 (310)
.++.+..|+++-.--+||||+..+++-.... +.. .-+.|.......+. |. . .++
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~----w~--~--~~i 106 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFT----WR--D--YRI 106 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeee----ec--c--cee
Confidence 4557788999999999999999998643211 111 11222221111111 11 1 279
Q ss_pred EEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH
Q 021615 160 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR 238 (310)
Q Consensus 160 ~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~ 238 (310)
.++||||++++..+ ..+.++-.|..++|+|+..+...+.. .++..+..| ++|.++.+||+|+..+.
T Consensus 107 NiIDTPGHvDFT~E-------VeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~ry-----~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 107 NIIDTPGHVDFTFE-------VERALRVLDGAVLVLDAVAGVESQTE-TVWRQMKRY-----NVPRICFINKMDRMGAS 172 (721)
T ss_pred EEecCCCceeEEEE-------ehhhhhhccCeEEEEEcccceehhhH-HHHHHHHhc-----CCCeEEEEehhhhcCCC
Confidence 99999999998653 34566678999999999887666654 455677776 79999999999998764
No 346
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.34 E-value=3.6e-07 Score=84.67 Aligned_cols=64 Identities=28% Similarity=0.471 Sum_probs=51.4
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 172 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~ 172 (310)
+++...+|||+|+||+||||+||+|...+.. +++.|+.|..-....+ + ..+.++|.||++-...
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L--d---------k~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL--D---------KKIRLLDSPGIVPPSI 312 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec--c---------CCceeccCCceeecCC
Confidence 4677889999999999999999999998864 4888888876544332 2 3689999999986544
No 347
>PRK00098 GTPase RsgA; Reviewed
Probab=98.33 E-value=1.2e-06 Score=80.44 Aligned_cols=58 Identities=29% Similarity=0.241 Sum_probs=39.8
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCC-------CceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 170 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~-------~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~ 170 (310)
...++++|.+|||||||+|+|.+.... .+..+ .||.......+. ....++||||+.+.
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~-----------~~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP-----------GGGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC-----------CCcEEEECCCcCcc
Confidence 346899999999999999999987532 23332 255444433332 14589999999764
No 348
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=2.1e-07 Score=86.51 Aligned_cols=129 Identities=22% Similarity=0.229 Sum_probs=84.9
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC---C---------------CCCCceeeccceEeeCCCCCCCccCCCceEE
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI---A---------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 161 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i---~---------------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i 161 (310)
..+.+|+++..-.+||||...+++-....+ + ...+.|+......+++. +.++.+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwk--------g~rinl 106 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK--------GHRINL 106 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccc--------cceEee
Confidence 445679999999999999999986432111 1 11223332222222222 238999
Q ss_pred EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--h
Q 021615 162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--D 239 (310)
Q Consensus 162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~ 239 (310)
+||||+.++.- ...++++.-|+++.|+|++.+...+.+..|++ -.. .+.|.++.+||+|...+. .
T Consensus 107 idtpghvdf~l-------everclrvldgavav~dasagve~qtltvwrq-adk-----~~ip~~~finkmdk~~anfe~ 173 (753)
T KOG0464|consen 107 IDTPGHVDFRL-------EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ-ADK-----FKIPAHCFINKMDKLAANFEN 173 (753)
T ss_pred ecCCCcceEEE-------EHHHHHHHhcCeEEEEeccCCcccceeeeehh-ccc-----cCCchhhhhhhhhhhhhhhhh
Confidence 99999998754 34566777899999999998877766665543 332 478999999999998653 2
Q ss_pred HHHHHHHHHH
Q 021615 240 RLQSLTEEIL 249 (310)
Q Consensus 240 ~~~~l~~~l~ 249 (310)
..+.+.+.+.
T Consensus 174 avdsi~ekl~ 183 (753)
T KOG0464|consen 174 AVDSIEEKLG 183 (753)
T ss_pred HHHHHHHHhC
Confidence 2344444443
No 349
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=1.6e-06 Score=83.45 Aligned_cols=121 Identities=19% Similarity=0.239 Sum_probs=78.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
+-|++||+||+|||||+..|...-. ..|+....|.+..... -.+++++..+|.-. .++.
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~t------k~ti~~i~GPiTvvsg-----K~RRiTflEcp~Dl----------~~mi 128 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRFT------KQTIDEIRGPITVVSG-----KTRRITFLECPSDL----------HQMI 128 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHHH------HhhhhccCCceEEeec-----ceeEEEEEeChHHH----------HHHH
Confidence 4578999999999999999986531 1122222222211100 02379999999432 2444
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHHHHHHHHHHh
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRLQSLTEEILK 250 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~l~~~l~~ 250 (310)
....-||++++++|+.-+...+.++.+ +.+.. .+.| ++.|++..|+......+......|..
T Consensus 129 DvaKIaDLVlLlIdgnfGfEMETmEFL-nil~~-----HGmPrvlgV~ThlDlfk~~stLr~~KKrlkh 191 (1077)
T COG5192 129 DVAKIADLVLLLIDGNFGFEMETMEFL-NILIS-----HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKH 191 (1077)
T ss_pred hHHHhhheeEEEeccccCceehHHHHH-HHHhh-----cCCCceEEEEeecccccChHHHHHHHHHHhh
Confidence 555678999999999876666665533 44443 3555 67899999999877666666665543
No 350
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.24 E-value=6e-06 Score=68.21 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=57.1
Q ss_pred HHHHhh-hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc--CCCccc
Q 021615 181 FLRHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVT 257 (310)
Q Consensus 181 ~~~~l~-~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~--g~~~~s 257 (310)
.++|+. .||++++|+|++++....+. .+...+.. .++|+++|+||+|+.+... ...+....... .+..+|
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~-----~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~iS 77 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE-----LGKKLLIVLNKADLVPKEV-LEKWKSIKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh-----CCCcEEEEEEhHHhCCHHH-HHHHHHHHHhCCCcEEEEE
Confidence 345554 59999999999875433332 23333322 3689999999999975422 22222222222 345589
Q ss_pred cCccCCHHHHHHHHhhcc
Q 021615 258 SETELSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~ 275 (310)
++++.|+++++..+....
T Consensus 78 a~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 78 AKERLGTKILRRTIKELA 95 (156)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999887543
No 351
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.24 E-value=3.9e-06 Score=69.56 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=59.2
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-CC--Ccccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-GC--DKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-g~--~~~sa 258 (310)
++.++.+|++++|+|++.+.... ...+.+.+... ..++|+++|+||+|+.+..+ ...+...+.+. .+ ..+|+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa 77 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE---KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASI 77 (157)
T ss_pred hHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc---cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeec
Confidence 56788999999999998754322 23344445432 13589999999999976533 34444444432 12 23799
Q ss_pred CccCCHHHHHHHHhhc
Q 021615 259 ETELSSEDAVKSLSTE 274 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~ 274 (310)
+.+.|++++++.+...
T Consensus 78 ~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 78 NNPFGKGSLIQLLRQF 93 (157)
T ss_pred cccccHHHHHHHHHHH
Confidence 9999999999887543
No 352
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=5.9e-06 Score=82.06 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=77.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCC-CCcee------ec-------cceEeeCCCCCCCccCCCceEEEeCCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADY-PFTTL------MP-------NLGRLDGDPTLGAEKYSSEATLADLPG 166 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~-~~tT~------~~-------~~~~v~~~~~~~~~~~~~~~~i~DtPG 166 (310)
.+.+|.++-.-.-|||||...|...+.-++.. .++-+ +. ..+.+.... .. ..++++|+||
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~----~~--~~~nlidspg 81 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH----KD--YLINLIDSPG 81 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc----Cc--eEEEEecCCC
Confidence 35679999999999999999999876544321 12111 00 001111100 01 2689999999
Q ss_pred CCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 167 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
++++.++ .-+..+-||..++++|+-.+...+.+..+++.... +...++|+||+|++
T Consensus 82 hvdf~se-------vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~------~~~~~lvinkidrl 137 (887)
T KOG0467|consen 82 HVDFSSE-------VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE------GLKPILVINKIDRL 137 (887)
T ss_pred ccchhhh-------hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc------cCceEEEEehhhhH
Confidence 9998652 33445679999999999988877777666655543 56778999999953
No 353
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.21 E-value=7.5e-07 Score=82.44 Aligned_cols=60 Identities=28% Similarity=0.401 Sum_probs=46.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 171 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~ 171 (310)
.-..|++||+||+||||+||.|-..++. +++.|+-|.-.+..++ .+++.++|+||+.-..
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL-----------mkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL-----------MKRIFLIDCPGVVYPS 366 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH-----------HhceeEecCCCccCCC
Confidence 3457999999999999999999998865 4888888874433222 2479999999997543
No 354
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=7.4e-06 Score=72.78 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=74.6
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC----CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc--
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-- 175 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i----~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~-- 175 (310)
.++|..||.+|.|||||+..|++..... ...|..-+.++...+.-. . ..-+++|+||.|+.+......
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEs----n--vrlKLtiv~tvGfGDQinK~~Sy 115 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQES----N--VRLKLTIVDTVGFGDQINKEDSY 115 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhc----C--eeEEEEEEeecccccccCccccc
Confidence 3679999999999999999999876432 223333333222222111 1 122789999999976432211
Q ss_pred -----hHHHHHHHHh---------------hhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615 176 -----GLGRNFLRHL---------------RRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDL 234 (310)
Q Consensus 176 -----~l~~~~~~~l---------------~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl 234 (310)
.+..+|..++ .+.++++|.+..+.... ..+. ...+.|. ..+.+|-|+-|+|.
T Consensus 116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~L-KslDLvtmk~Ld------skVNIIPvIAKaDt 188 (406)
T KOG3859|consen 116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSL-KSLDLVTMKKLD------SKVNIIPVIAKADT 188 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcch-hHHHHHHHHHHh------hhhhhHHHHHHhhh
Confidence 1223332222 35688999998876432 2222 2223444 25677888899998
Q ss_pred CCcHh
Q 021615 235 PEARD 239 (310)
Q Consensus 235 ~~~~~ 239 (310)
....+
T Consensus 189 isK~e 193 (406)
T KOG3859|consen 189 ISKEE 193 (406)
T ss_pred hhHHH
Confidence 87544
No 355
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.20 E-value=2.4e-05 Score=75.88 Aligned_cols=154 Identities=20% Similarity=0.195 Sum_probs=91.4
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeecc-ceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~-~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
|..+.+.++|+.|+|||.|++++.|....- .+.+++...+ +..+... +.. .-+.+-|.+-. +......
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~---g~~---k~LiL~ei~~~-~~~~l~~--- 491 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVK---GQQ---KYLILREIGED-DQDFLTS--- 491 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeec---ccc---ceEEEeecCcc-ccccccC---
Confidence 466789999999999999999999965332 2222222111 1111111 111 13566666544 2211111
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCC
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCD 254 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~ 254 (310)
.. ..||++.+++|.+++.+++....+ ...|... ...|+++|+.|+|+....+ +..++. .+++++
T Consensus 492 ----ke-~~cDv~~~~YDsS~p~sf~~~a~v---~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~---~~~~i~ 559 (625)
T KOG1707|consen 492 ----KE-AACDVACLVYDSSNPRSFEYLAEV---YNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFC---RQLGLP 559 (625)
T ss_pred ----cc-ceeeeEEEecccCCchHHHHHHHH---HHHhhhc-cCCceEEEeeccccchhhhccCCChHHHH---HhcCCC
Confidence 01 469999999999988776654433 2333222 5799999999999976542 123333 345554
Q ss_pred c---cccCccCCHHHHHHHHhhccCC
Q 021615 255 K---VTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 255 ~---~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
. +|.+.... .++|..|+..+..
T Consensus 560 ~P~~~S~~~~~s-~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 560 PPIHISSKTLSS-NELFIKLATMAQY 584 (625)
T ss_pred CCeeeccCCCCC-chHHHHHHHhhhC
Confidence 4 56664333 8899888877644
No 356
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.20 E-value=2.1e-06 Score=78.44 Aligned_cols=58 Identities=31% Similarity=0.257 Sum_probs=38.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC-CC-------CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI-AD-------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 171 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~-------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~ 171 (310)
..++++|++|||||||+|+|++..... +. ...||.......+. ....++||||+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~-----------~~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP-----------GGGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC-----------CCCEEEECCCCCccC
Confidence 569999999999999999999875321 21 12244433322221 134799999997643
No 357
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.17 E-value=3.3e-05 Score=70.15 Aligned_cols=165 Identities=16% Similarity=0.134 Sum_probs=90.2
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
.+.....|.++|..++||||||..|-+.+. . .++.-+.- ..++......+.. .++.+|-.-|-.-. .++
T Consensus 48 klpsgk~VlvlGdn~sGKtsLi~klqg~e~-~--KkgsgLeY--~yl~V~de~RDd~--tr~~VWiLDGd~~h----~~L 116 (473)
T KOG3905|consen 48 KLPSGKNVLVLGDNGSGKTSLISKLQGSET-V--KKGSGLEY--LYLHVHDEDRDDL--TRCNVWILDGDLYH----KGL 116 (473)
T ss_pred cCCCCCeEEEEccCCCchhHHHHHhhcccc-c--CCCCCcce--EEEecccccchhh--hhcceEEecCchhh----hhH
Confidence 445667899999999999999999998761 1 11111110 1111111111111 25666766563211 222
Q ss_pred HHHHHHHhhhc-CEEEEecccCCC-CcHHHHHHHHHHHH-------------------------hcCC------------
Q 021615 178 GRNFLRHLRRT-RLLVHVIDAAAE-NPVNDYRTVKEELR-------------------------MYNP------------ 218 (310)
Q Consensus 178 ~~~~~~~l~~~-d~il~VvD~s~~-~~~~~~~~~~~~l~-------------------------~~~~------------ 218 (310)
-+-.+..-.-+ -++++++|++.+ ...+.++.|...+. .|..
T Consensus 117 Lk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r 196 (473)
T KOG3905|consen 117 LKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRR 196 (473)
T ss_pred HhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccc
Confidence 21111111112 367888899876 22333333332221 1110
Q ss_pred ----------------------CCCCCCEEEEEeCCCCCCc--------HhHHHHHHHHHHhc----C--CCccccCccC
Q 021615 219 ----------------------DYLERPFIVVLNKIDLPEA--------RDRLQSLTEEILKI----G--CDKVTSETEL 262 (310)
Q Consensus 219 ----------------------~~~~~p~ivv~NK~Dl~~~--------~~~~~~l~~~l~~~----g--~~~~sa~~~~ 262 (310)
...+.|++||++|||.... ++.+..+...++++ | +..+|.++..
T Consensus 197 ~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~K 276 (473)
T KOG3905|consen 197 TTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETK 276 (473)
T ss_pred cccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeeccccc
Confidence 1246899999999998431 23344444445433 2 4558999999
Q ss_pred CHHHHHHHHhh
Q 021615 263 SSEDAVKSLST 273 (310)
Q Consensus 263 gi~~l~~~l~~ 273 (310)
+++=++.++..
T Consensus 277 NidllyKYivh 287 (473)
T KOG3905|consen 277 NIDLLYKYIVH 287 (473)
T ss_pred chHHHHHHHHH
Confidence 99999887764
No 358
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.14 E-value=3.3e-06 Score=76.49 Aligned_cols=58 Identities=29% Similarity=0.289 Sum_probs=38.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC-CC---CCC----CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAK-PD---IAD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 171 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~-~~---i~~----~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~ 171 (310)
...+++|.+|||||||+|+|.... .+ ++. --.||.......+.. .-.|+||||+.+..
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-----------gG~iiDTPGf~~~~ 230 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-----------GGWIIDTPGFRSLG 230 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-----------CCEEEeCCCCCccC
Confidence 357899999999999999998743 11 221 223555444433321 34789999997753
No 359
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.14 E-value=6.9e-06 Score=70.22 Aligned_cols=90 Identities=19% Similarity=0.195 Sum_probs=57.1
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH-----Hhc-
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-----LKI- 251 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l-----~~~- 251 (310)
...+..+++++|++++|+|+++...... .++... ..++|+++|+||+|+.........+.... ...
T Consensus 25 ~~~l~~~~~~ad~il~VvD~~~~~~~~~-----~~l~~~---~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 25 LNLLSSISPKKALVVHVVDIFDFPGSLI-----PRLRLF---GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHhcccCCcEEEEEEECccCCCccc-----hhHHHh---cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 3344556789999999999987542211 112111 13689999999999975432122222111 222
Q ss_pred ----CCCccccCccCCHHHHHHHHhhcc
Q 021615 252 ----GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 252 ----g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+..+|++++.|+++++..+...+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 244589999999999999987644
No 360
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=1e-05 Score=70.55 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=89.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
++|.++|.--+||||+-...+..-+ .-.-+...|..+....+...- ..+.+||.||+.+.....-. +
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sf--------inf~v~dfPGQ~~~Fd~s~D----~ 95 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSF--------INFQVWDFPGQMDFFDPSFD----Y 95 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhh--------cceEEeecCCccccCCCccC----H
Confidence 6699999999999999888776542 112222233332222222111 16899999999886432222 2
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-------HHHHHHHHHHhcCCC
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-------RLQSLTEEILKIGCD 254 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-------~~~~l~~~l~~~g~~ 254 (310)
..-++.+.+++||+|+.+. -.+.+..+...+.....-..+..+-|.+.|.|-+..+. ......+.+...|+.
T Consensus 96 e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle 174 (347)
T KOG3887|consen 96 EMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLE 174 (347)
T ss_pred HHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhc
Confidence 2334679999999998752 23333333333322222224677888999999886532 223344455555554
Q ss_pred cc------ccCccCCHHHHHHHHhhcc
Q 021615 255 KV------TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 255 ~~------sa~~~~gi~~l~~~l~~~~ 275 (310)
.+ .+.-..++-++|..+..++
T Consensus 175 ~v~vsf~LTSIyDHSIfEAFSkvVQkL 201 (347)
T KOG3887|consen 175 KVQVSFYLTSIYDHSIFEAFSKVVQKL 201 (347)
T ss_pred cceEEEEEeeecchHHHHHHHHHHHHH
Confidence 42 1222334555555544433
No 361
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.13 E-value=2.6e-05 Score=72.24 Aligned_cols=100 Identities=14% Similarity=0.070 Sum_probs=54.6
Q ss_pred ceEEEeCCCCCccccCC-chHHHHHHHHh-----hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 021615 158 EATLADLPGLIEGAHLG-KGLGRNFLRHL-----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 231 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~-~~l~~~~~~~l-----~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK 231 (310)
.++++||||........ ..+. .+.+.+ ...+..++|+|++.. .+.+......... -.+.-+|+||
T Consensus 198 D~ViIDTaGr~~~~~~l~~eL~-~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~------~~~~giIlTK 268 (318)
T PRK10416 198 DVLIIDTAGRLHNKTNLMEELK-KIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEA------VGLTGIILTK 268 (318)
T ss_pred CEEEEeCCCCCcCCHHHHHHHH-HHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhh------CCCCEEEEEC
Confidence 68999999986532210 1111 222222 135778999999853 2333333222221 1345788999
Q ss_pred CCCCCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615 232 IDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 269 (310)
Q Consensus 232 ~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~ 269 (310)
+|....- -.+.......+++..-..+|++++++-.
T Consensus 269 lD~t~~~---G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~ 303 (318)
T PRK10416 269 LDGTAKG---GVVFAIADELGIPIKFIGVGEGIDDLQP 303 (318)
T ss_pred CCCCCCc---cHHHHHHHHHCCCEEEEeCCCChhhCcc
Confidence 9965432 2233334455666655558888766543
No 362
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.12 E-value=4.3e-06 Score=75.48 Aligned_cols=66 Identities=26% Similarity=0.359 Sum_probs=48.1
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCC------CCCCCCCCceeeccc-eEeeCCCCCCCccCCCceEEEeCCCCCcccc
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNL-GRLDGDPTLGAEKYSSEATLADLPGLIEGAH 172 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~------~~i~~~~~tT~~~~~-~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~ 172 (310)
.....|.++|-||+|||||+|++.... ..++.+|+.|..... ..+.- ...+.++||||+....+
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~---------rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH---------RPPVYLIDTPGILVPSI 211 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc---------CCceEEecCCCcCCCCC
Confidence 355789999999999999999986432 344889999986544 22221 23689999999987755
Q ss_pred CC
Q 021615 173 LG 174 (310)
Q Consensus 173 ~~ 174 (310)
.+
T Consensus 212 ~~ 213 (335)
T KOG2485|consen 212 VD 213 (335)
T ss_pred CC
Confidence 43
No 363
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.12 E-value=9.6e-06 Score=68.25 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=58.9
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc--CCCcc
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKV 256 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~--g~~~~ 256 (310)
.+....+..+|++++|+|++.+....+.. +.+.+ .++|.++|+||+|+.+..+ ...+.+.+... .+..+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~-i~~~~-------~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~vi~i 81 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPL-LEKIL-------GNKPRIIVLNKADLADPKK-TKKWLKYFESKGEKVLFV 81 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCChh-hHhHh-------cCCCEEEEEehhhcCChHH-HHHHHHHHHhcCCeEEEE
Confidence 35567789999999999998654332221 22222 2579999999999975432 23333444432 23458
Q ss_pred ccCccCCHHHHHHHHhhc
Q 021615 257 TSETELSSEDAVKSLSTE 274 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~ 274 (310)
|++++.|++++...+...
T Consensus 82 Sa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 82 NAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred ECCCcccHHHHHHHHHHH
Confidence 999999999999888664
No 364
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.12 E-value=1.1e-05 Score=65.75 Aligned_cols=80 Identities=20% Similarity=0.261 Sum_probs=53.1
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC--CCcc
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKV 256 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g--~~~~ 256 (310)
+.++++++.||++++|+|+.++....+ ..+.+.+.... .++|+++|+||+|+.+.. ....+.+.+...+ +..+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~---~~k~~iivlNK~DL~~~~-~~~~~~~~~~~~~~~ii~i 77 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD---PRKKNILLLNKADLLTEE-QRKAWAEYFKKEGIVVVFF 77 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc---CCCcEEEEEechhcCCHH-HHHHHHHHHHhcCCeEEEE
Confidence 356788999999999999987654442 23334444321 368999999999997543 3445555565544 3446
Q ss_pred ccCccCC
Q 021615 257 TSETELS 263 (310)
Q Consensus 257 sa~~~~g 263 (310)
|+.++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 7776653
No 365
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.11 E-value=3.4e-06 Score=71.53 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=46.1
Q ss_pred EEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHH----hcCCCccccCccCCH
Q 021615 190 LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEIL----KIGCDKVTSETELSS 264 (310)
Q Consensus 190 ~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~----~~g~~~~sa~~~~gi 264 (310)
.-++|+|.+.++... +.-.|.+. +.=++|+||.|+...-. .++.+.+... +..+..++.++|+|+
T Consensus 120 ~~v~VidvteGe~~P---------~K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 120 LRVVVIDVTEGEDIP---------RKGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred eEEEEEECCCCCCCc---------ccCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 667888877654211 11112222 24578999999976422 1233333333 456777999999999
Q ss_pred HHHHHHHhhc
Q 021615 265 EDAVKSLSTE 274 (310)
Q Consensus 265 ~~l~~~l~~~ 274 (310)
++.+.++...
T Consensus 190 ~~~~~~i~~~ 199 (202)
T COG0378 190 DEWLRFIEPQ 199 (202)
T ss_pred HHHHHHHHhh
Confidence 9999987543
No 366
>PRK00098 GTPase RsgA; Reviewed
Probab=98.06 E-value=1.4e-05 Score=73.36 Aligned_cols=83 Identities=19% Similarity=0.125 Sum_probs=59.5
Q ss_pred hhhcCEEEEecccCCCCcHHH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC--CccccCcc
Q 021615 185 LRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKVTSETE 261 (310)
Q Consensus 185 l~~~d~il~VvD~s~~~~~~~-~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~--~~~sa~~~ 261 (310)
+.++|++++|+|+.++.+... +..+...+.. .++|.++|+||+|+.+..+....+.+.+...++ ..+|++++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~-----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-----NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 468999999999987655433 3445444443 468999999999997443444445555555554 45899999
Q ss_pred CCHHHHHHHHh
Q 021615 262 LSSEDAVKSLS 272 (310)
Q Consensus 262 ~gi~~l~~~l~ 272 (310)
.|+++++..+.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999998875
No 367
>PRK12289 GTPase RsgA; Reviewed
Probab=98.06 E-value=2.1e-05 Score=73.81 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=59.4
Q ss_pred hhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC--CccccCcc
Q 021615 185 LRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC--DKVTSETE 261 (310)
Q Consensus 185 l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~--~~~sa~~~ 261 (310)
+.++|.+++|+|+.++. ....+..++..... .+.|+++|+||+|+.+..+ .+.+.+.+...++ ..+|+.++
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-----~~ip~ILVlNK~DLv~~~~-~~~~~~~~~~~g~~v~~iSA~tg 160 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLSRFLVKAES-----TGLEIVLCLNKADLVSPTE-QQQWQDRLQQWGYQPLFISVETG 160 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEchhcCChHH-HHHHHHHHHhcCCeEEEEEcCCC
Confidence 56899999999998754 22233444443332 4789999999999986533 4555566666554 44799999
Q ss_pred CCHHHHHHHHhh
Q 021615 262 LSSEDAVKSLST 273 (310)
Q Consensus 262 ~gi~~l~~~l~~ 273 (310)
.|+++++..+..
T Consensus 161 ~GI~eL~~~L~~ 172 (352)
T PRK12289 161 IGLEALLEQLRN 172 (352)
T ss_pred CCHHHHhhhhcc
Confidence 999999998764
No 368
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.02 E-value=1.1e-05 Score=70.21 Aligned_cols=77 Identities=26% Similarity=0.325 Sum_probs=44.3
Q ss_pred CceEEEeCCCCCccccCCchHHHHHHHHhhhcCE---EEEecccCC-CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 021615 157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRL---LVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 232 (310)
Q Consensus 157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~---il~VvD~s~-~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~ 232 (310)
..+.++|.||+.+.......+... .+.+++.|. ++.++|+-- .++..-+..++-.+.... ..+-|-+=|+.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I-~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl--~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKI-FRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML--HMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHH-HHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH--hhcccchhhhhHh
Confidence 368999999999865433444433 455655554 455555422 233333333333333221 1467888899999
Q ss_pred CCCC
Q 021615 233 DLPE 236 (310)
Q Consensus 233 Dl~~ 236 (310)
|+..
T Consensus 174 Dl~~ 177 (290)
T KOG1533|consen 174 DLLK 177 (290)
T ss_pred HHHH
Confidence 9875
No 369
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.02 E-value=8.5e-05 Score=71.17 Aligned_cols=96 Identities=11% Similarity=0.080 Sum_probs=49.9
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHH--hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~--l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.++|+||||..... ..+-...... ....+.+++|+|+...... .. ..+.+.. .-.+.-+|+||+|-.
T Consensus 184 DvViIDTaGr~~~d---~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~-~a~~F~~-----~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 184 DIIIVDTSGRHKQE---DSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EA-QAKAFKD-----SVDVGSVIITKLDGH 252 (429)
T ss_pred CEEEEECCCCCcch---HHHHHHHHHHhhhcCCcEEEEEeccccChhH--HH-HHHHHHh-----ccCCcEEEEECccCC
Confidence 78999999975431 2222232222 2346889999998754221 11 1122222 123567889999986
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHHH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSEDA 267 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l 267 (310)
..-- .........+.+..-..+|+.++++
T Consensus 253 argG---~aLs~~~~t~~PI~fig~Ge~v~Dl 281 (429)
T TIGR01425 253 AKGG---GALSAVAATKSPIIFIGTGEHIDDF 281 (429)
T ss_pred CCcc---HHhhhHHHHCCCeEEEcCCCChhhc
Confidence 4321 1122223334444444455555443
No 370
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.01 E-value=2.1e-05 Score=71.51 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=59.9
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC--CCcc
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKV 256 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g--~~~~ 256 (310)
+++.+.++.+|++++|+|+..+....+. .+.+.+ .++|+++|+||+|+.+..+ ...+.+.+...+ +..+
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-------~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~~~~~vi~i 83 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-------GNKPRLIVLNKADLADPAV-TKQWLKYFEEKGIKALAI 83 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-------CCCCEEEEEEccccCCHHH-HHHHHHHHHHcCCeEEEE
Confidence 4566778999999999999865443331 222222 2589999999999975432 344444454433 3458
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
|+..+.|+.++.+.+....
T Consensus 84 Sa~~~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 84 NAKKGKGVKKIIKAAKKLL 102 (276)
T ss_pred ECCCcccHHHHHHHHHHHH
Confidence 9999999999988775543
No 371
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=4.5e-05 Score=69.68 Aligned_cols=132 Identities=23% Similarity=0.303 Sum_probs=83.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCC-----------CC-----CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKP-----------DI-----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 166 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~-----------~i-----~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG 166 (310)
.+|+-+|.-.-|||||..+++.... .+ ...-+.|+ +...+.|... .+.+-=+|+||
T Consensus 55 vNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITI--n~aHveYeTa------~RhYaH~DCPG 126 (449)
T KOG0460|consen 55 VNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITI--NAAHVEYETA------KRHYAHTDCPG 126 (449)
T ss_pred ccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceE--eeeeeeeecc------ccccccCCCCc
Confidence 4689999999999999999975321 11 11223344 3344444332 23567799999
Q ss_pred CCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCC-CCEEEEEeCCCCCCcHhHH----
Q 021615 167 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPFIVVLNKIDLPEARDRL---- 241 (310)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~-~p~ivv~NK~Dl~~~~~~~---- 241 (310)
+-++ .+....-...-|+.++||.+.+....+.-+.++-. ++ .+ ..++|.+||.|+.+..+.+
T Consensus 127 HADY-------IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLA-rQ-----VGV~~ivvfiNKvD~V~d~e~leLVE 193 (449)
T KOG0460|consen 127 HADY-------IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLA-RQ-----VGVKHIVVFINKVDLVDDPEMLELVE 193 (449)
T ss_pred hHHH-------HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHH-HH-----cCCceEEEEEecccccCCHHHHHHHH
Confidence 9554 22222333456999999999997666655544311 11 23 4478889999999665533
Q ss_pred HHHHHHHHhcCCCc
Q 021615 242 QSLTEEILKIGCDK 255 (310)
Q Consensus 242 ~~l~~~l~~~g~~~ 255 (310)
-++++.|..+|+..
T Consensus 194 mE~RElLse~gf~G 207 (449)
T KOG0460|consen 194 MEIRELLSEFGFDG 207 (449)
T ss_pred HHHHHHHHHcCCCC
Confidence 35666777777765
No 372
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.99 E-value=8.4e-05 Score=67.38 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=54.0
Q ss_pred ceEEEeCCCCCccccCCchHH---HHHHHHhh-----hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEE
Q 021615 158 EATLADLPGLIEGAHLGKGLG---RNFLRHLR-----RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL 229 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~---~~~~~~l~-----~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~ 229 (310)
.+.++||||..... ..+- ..+.+.+. .+|.+++|+|++. ..+.+.......+.. .+.-+|+
T Consensus 156 D~ViIDT~G~~~~d---~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~------~~~g~Il 224 (272)
T TIGR00064 156 DVVLIDTAGRLQNK---VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV------GLTGIIL 224 (272)
T ss_pred CEEEEeCCCCCcch---HHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC------CCCEEEE
Confidence 68999999986531 1111 12222222 2789999999974 333444333333221 2457889
Q ss_pred eCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCHHHHH
Q 021615 230 NKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAV 268 (310)
Q Consensus 230 NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~ 268 (310)
||+|.....-.. .......+++..-..+|++++++-
T Consensus 225 TKlDe~~~~G~~---l~~~~~~~~Pi~~~~~Gq~~~dl~ 260 (272)
T TIGR00064 225 TKLDGTAKGGII---LSIAYELKLPIKFIGVGEKIDDLA 260 (272)
T ss_pred EccCCCCCccHH---HHHHHHHCcCEEEEeCCCChHhCc
Confidence 999986543222 222334455555555777765543
No 373
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.99 E-value=2e-05 Score=84.90 Aligned_cols=132 Identities=23% Similarity=0.166 Sum_probs=72.9
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCc--eee-ccceEeeCCCCCCCccCCCceEEEeCCCCCccc---
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFT--TLM-PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA--- 171 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~t--T~~-~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~--- 171 (310)
.+-.+|=-+|+|++|+||||+|+.- |.+....+.... +.. .....++. .+.+..+++||+|..-..
T Consensus 107 ~lY~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w-------wf~~~avliDtaG~y~~~~~~ 178 (1169)
T TIGR03348 107 YLYDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW-------WFTDEAVLIDTAGRYTTQDSD 178 (1169)
T ss_pred hhhcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce-------EecCCEEEEcCCCccccCCCc
Confidence 4556666899999999999999987 443222110000 000 00001111 123478999999954221
Q ss_pred -cCCchHHHHHHHHhh------hcCEEEEecccCCCC--cH----HHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCc
Q 021615 172 -HLGKGLGRNFLRHLR------RTRLLVHVIDAAAEN--PV----NDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 172 -~~~~~l~~~~~~~l~------~~d~il~VvD~s~~~--~~----~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~~ 237 (310)
......-..|+..++ -.++||+++|+++.. .. .....++..|.+.... -...|+.||++|||+...
T Consensus 179 ~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 179 PEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred ccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 112333445555553 369999999987621 11 1123333333322211 137899999999998853
No 374
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=1.7e-05 Score=75.67 Aligned_cols=135 Identities=18% Similarity=0.241 Sum_probs=83.8
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-----CCCCCcee--eccceEeeC-------------------CCCCCCc
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----ADYPFTTL--MPNLGRLDG-------------------DPTLGAE 153 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-----~~~~~tT~--~~~~~~v~~-------------------~~~~~~~ 153 (310)
+.+.++.++..-.-|||||...|.....-+ +...||.. +.+...+.. ...-...
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 456678899999999999999998654322 12222211 111111110 0000111
Q ss_pred cCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615 154 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 233 (310)
Q Consensus 154 ~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 233 (310)
.| -+.++|.||+.++++ .....++-+|+.+.|+|+-+..-.+.-..+++.+.+ .-+| ++|+||+|
T Consensus 97 ~F--LiNLIDSPGHVDFSS-------EVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E-----RIkP-vlv~NK~D 161 (842)
T KOG0469|consen 97 GF--LINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE-----RIKP-VLVMNKMD 161 (842)
T ss_pred ce--eEEeccCCCcccchh-------hhhheeEeccCcEEEEEccCceEechHHHHHHHHHh-----hccc-eEEeehhh
Confidence 12 578999999999865 344567789999999999887766665666666664 2345 66789999
Q ss_pred CC------CcHhHHHHHHHHHH
Q 021615 234 LP------EARDRLQSLTEEIL 249 (310)
Q Consensus 234 l~------~~~~~~~~l~~~l~ 249 (310)
+. +.++..+.+.+..+
T Consensus 162 RAlLELq~~~EeLyqtf~R~VE 183 (842)
T KOG0469|consen 162 RALLELQLSQEELYQTFQRIVE 183 (842)
T ss_pred HHHHhhcCCHHHHHHHHHHHHh
Confidence 73 23444555555554
No 375
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.97 E-value=0.00025 Score=59.81 Aligned_cols=81 Identities=21% Similarity=0.233 Sum_probs=54.8
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.++++|||+.... .....+..+|.+++|+..+.. .......+.+.++.+ +.|+.+|+||+|....
T Consensus 94 d~viiDtpp~~~~---------~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~-----~~~~~vV~N~~~~~~~ 158 (179)
T cd03110 94 ELIIIDGPPGIGC---------PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF-----GIPVGVVINKYDLNDE 158 (179)
T ss_pred CEEEEECcCCCcH---------HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc-----CCCEEEEEeCCCCCcc
Confidence 7899999975432 223445689999999998854 445556666666653 5678899999997643
Q ss_pred HhHHHHHHHHHHhcCCCc
Q 021615 238 RDRLQSLTEEILKIGCDK 255 (310)
Q Consensus 238 ~~~~~~l~~~l~~~g~~~ 255 (310)
..+++.+.++..+++.
T Consensus 159 --~~~~~~~~~~~~~~~v 174 (179)
T cd03110 159 --IAEEIEDYCEEEGIPI 174 (179)
T ss_pred --hHHHHHHHHHHcCCCe
Confidence 2345556666666543
No 376
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.96 E-value=6.5e-06 Score=70.42 Aligned_cols=79 Identities=24% Similarity=0.260 Sum_probs=45.1
Q ss_pred CCceEEEeCCCCCccccCCchHHHHHHHHhhh---cCEEEEecccCC-CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 021615 156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRR---TRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 231 (310)
Q Consensus 156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~---~d~il~VvD~s~-~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK 231 (310)
...+.++|+||+++-... ...-.++.+|+.+ --+++|++|..= -+...-+.-.+..+... -..+.|.|=|++|
T Consensus 97 eddylifDcPGQIELytH-~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAM--i~lE~P~INvlsK 173 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTH-LPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAM--ISLEVPHINVLSK 173 (273)
T ss_pred cCCEEEEeCCCeeEEeec-ChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHH--HHhcCcchhhhhH
Confidence 357899999999984321 2334456666654 235677777542 11111111112222211 1147899999999
Q ss_pred CCCCCc
Q 021615 232 IDLPEA 237 (310)
Q Consensus 232 ~Dl~~~ 237 (310)
+|+...
T Consensus 174 MDLlk~ 179 (273)
T KOG1534|consen 174 MDLLKD 179 (273)
T ss_pred HHHhhh
Confidence 999875
No 377
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.95 E-value=0.00019 Score=59.07 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=35.3
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 233 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 233 (310)
.+.++||||.... +...+..||.+++|...+- .+.+..+.-.. ...-=++++||+|
T Consensus 93 D~iiIDtaG~~~~----------~~~~~~~Ad~~ivv~tpe~---~D~y~~~k~~~-------~~~~~~~~~~k~~ 148 (148)
T cd03114 93 DVIIVETVGVGQS----------EVDIASMADTTVVVMAPGA---GDDIQAIKAGI-------MEIADIVVVNKAD 148 (148)
T ss_pred CEEEEECCccChh----------hhhHHHhCCEEEEEECCCc---hhHHHHhhhhH-------hhhcCEEEEeCCC
Confidence 7899999997532 2345568999999887762 23332222111 2334488899998
No 378
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.94 E-value=4.4e-05 Score=59.74 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=64.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.||+++|..|+|||+|+.++....... .+ |. +.. |+.-.. .
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~--~~--~~-~t~------------------------~~~~~~----------~ 41 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDY--VP--TV-FTI------------------------GIDVYD----------P 41 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccc--cC--ce-ehh------------------------hhhhcc----------c
Confidence 379999999999999999996543110 00 00 000 011000 0
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccCccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETEL 262 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~ 262 (310)
...+.++.++.|+|.....+++.. |...+..... .+.|.+++.||.|+....+...... ..+.+.+++++.
T Consensus 42 ~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k--~dl~~~~~~nk~dl~~~~~~~~~~~-----~~~~~~s~~~~~ 112 (124)
T smart00010 42 TSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNK--SDLPILVGGNRDVLEEERQVATEEG-----LEFAETSAKTPE 112 (124)
T ss_pred cccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCC--CCCcEEEEeechhhHhhCcCCHHHH-----HHHHHHhCCCcc
Confidence 123456788888888776655443 4444443322 3578899999999843211111111 123356788888
Q ss_pred CHH
Q 021615 263 SSE 265 (310)
Q Consensus 263 gi~ 265 (310)
++.
T Consensus 113 ~~~ 115 (124)
T smart00010 113 EGE 115 (124)
T ss_pred hhh
Confidence 763
No 379
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.92 E-value=4.3e-05 Score=63.15 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=51.9
Q ss_pred CEEEEecccCCCCcHHHHHHHH-HHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-C--CCccccCccCCH
Q 021615 189 RLLVHVIDAAAENPVNDYRTVK-EELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-G--CDKVTSETELSS 264 (310)
Q Consensus 189 d~il~VvD~s~~~~~~~~~~~~-~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-g--~~~~sa~~~~gi 264 (310)
|++++|+|+.++...... .+. ..+.. .++|+++|+||+|+....+ ...+...+... + +..+|++++.|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~-~i~~~~~~~-----~~~p~IiVlNK~Dl~~~~~-~~~~~~~~~~~~~~~ii~vSa~~~~gi 73 (155)
T cd01849 1 DVILEVLDARDPLGTRSP-DIERVLIKE-----KGKKLILVLNKADLVPKEV-LRKWLAYLRHSYPTIPFKISATNGQGI 73 (155)
T ss_pred CEEEEEEeccCCccccCH-HHHHHHHhc-----CCCCEEEEEechhcCCHHH-HHHHHHHHHhhCCceEEEEeccCCcCh
Confidence 789999999876544332 222 22322 3689999999999976532 33333333322 2 345899999999
Q ss_pred HHHHHHHhhc
Q 021615 265 EDAVKSLSTE 274 (310)
Q Consensus 265 ~~l~~~l~~~ 274 (310)
.++.+.+...
T Consensus 74 ~~L~~~i~~~ 83 (155)
T cd01849 74 EKKESAFTKQ 83 (155)
T ss_pred hhHHHHHHHH
Confidence 9999887543
No 380
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.90 E-value=2.9e-05 Score=65.87 Aligned_cols=84 Identities=24% Similarity=0.377 Sum_probs=46.7
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
...++-+.|..+.... -+....+...-..+.++.|+|+..-...... ..+...+.. -=++|+||+|+.+
T Consensus 86 d~IiIE~sG~a~p~~l--~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~--------ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 86 DRIIIETSGLADPAPL--ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF--------ADVIVLNKIDLVS 155 (178)
T ss_dssp SEEEEEEECSSGGGGH--HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT---------SEEEEE-GGGHH
T ss_pred CEEEECCccccccchh--hhccccccccccccceeEEeccccccccccchhhhhhcchh--------cCEEEEeccccCC
Confidence 6789999997665332 0011112223356899999999653212222 333344432 2278899999987
Q ss_pred cHhHHHHHHHHHHhc
Q 021615 237 ARDRLQSLTEEILKI 251 (310)
Q Consensus 237 ~~~~~~~l~~~l~~~ 251 (310)
..+..+.+.+.++.+
T Consensus 156 ~~~~i~~~~~~ir~l 170 (178)
T PF02492_consen 156 DEQKIERVREMIREL 170 (178)
T ss_dssp HH--HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 653446666666544
No 381
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=4.5e-05 Score=71.85 Aligned_cols=161 Identities=15% Similarity=0.143 Sum_probs=77.8
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-C--CCCCceeecc------------------ceEeeCCCCCC---CccC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-A--DYPFTTLMPN------------------LGRLDGDPTLG---AEKY 155 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~--~~~~tT~~~~------------------~~~v~~~~~~~---~~~~ 155 (310)
...-.++|+|++||||||++..|...-... + ...+.|.+.. ...+.....+. ...-
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 334568999999999999999997531100 0 0111111111 00000000000 0000
Q ss_pred CCceEEEeCCCCCccccCCchHHHHHHHHh---hhcCEEEEecccCCCCcHHHHHHHHHHHHhcC--CCC-CCCCEEEEE
Q 021615 156 SSEATLADLPGLIEGAHLGKGLGRNFLRHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDY-LERPFIVVL 229 (310)
Q Consensus 156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l---~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~--~~~-~~~p~ivv~ 229 (310)
+..++++||||..... ..+... +..+ ..+.-.++|++++... +++..+........ +.. ...+-=+|+
T Consensus 215 ~~DlVLIDTaG~~~~d---~~l~e~-La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~ 288 (374)
T PRK14722 215 NKHMVLIDTIGMSQRD---RTVSDQ-IAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCIL 288 (374)
T ss_pred CCCEEEEcCCCCCccc---HHHHHH-HHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEE
Confidence 2378999999976432 222222 2223 2344568899987632 22222222222110 000 001235778
Q ss_pred eCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615 230 NKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 269 (310)
Q Consensus 230 NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~ 269 (310)
+|.|-... .-.+.......+++..-..+|+.+.+-+.
T Consensus 289 TKlDEt~~---~G~~l~~~~~~~lPi~yvt~Gq~VPedl~ 325 (374)
T PRK14722 289 TKLDEASN---LGGVLDTVIRYKLPVHYVSTGQKVPENLY 325 (374)
T ss_pred eccccCCC---ccHHHHHHHHHCcCeEEEecCCCCCcccc
Confidence 99997654 23344444555666655566666666443
No 382
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=5.7e-05 Score=73.76 Aligned_cols=97 Identities=21% Similarity=0.211 Sum_probs=54.5
Q ss_pred ceEEEeCCCCCccccCCchHHHH--HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~--~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.++|+||||...... .+... .+.... ....++|+++.. ...++..+.+.+.. ..+.-+|+||+|..
T Consensus 430 DLVLIDTaG~s~~D~---~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~------~~~~gvILTKlDEt 497 (559)
T PRK12727 430 KLVLIDTAGMGQRDR---ALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAH------AKPQGVVLTKLDET 497 (559)
T ss_pred CEEEecCCCcchhhH---HHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHh------hCCeEEEEecCcCc
Confidence 789999999864321 11111 122222 234567777763 23343333333322 24677999999986
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 269 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~ 269 (310)
.. .-.+...+...+++..-...|+.+.+-+.
T Consensus 498 ~~---lG~aLsv~~~~~LPI~yvt~GQ~VPeDL~ 528 (559)
T PRK12727 498 GR---FGSALSVVVDHQMPITWVTDGQRVPDDLH 528 (559)
T ss_pred cc---hhHHHHHHHHhCCCEEEEeCCCCchhhhh
Confidence 43 34455555566676666667777754443
No 383
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.89 E-value=3e-05 Score=70.88 Aligned_cols=97 Identities=16% Similarity=0.275 Sum_probs=64.6
Q ss_pred eCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHH
Q 021615 163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ 242 (310)
Q Consensus 163 DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 242 (310)
-.||+... ..+++.+.++.+|++++|+|+..+...++ ..+.+.+ .++|+++|+||+|+.+. +..+
T Consensus 6 wfpgHm~k------~~~~l~~~l~~aDvIL~VvDar~p~~~~~-~~l~~~~-------~~kp~iiVlNK~DL~~~-~~~~ 70 (287)
T PRK09563 6 WFPGHMAK------ARREIKENLKLVDVVIEVLDARIPLSSEN-PMIDKII-------GNKPRLLILNKSDLADP-EVTK 70 (287)
T ss_pred CcHHHHHH------HHHHHHHHhhhCCEEEEEEECCCCCCCCC-hhHHHHh-------CCCCEEEEEEchhcCCH-HHHH
Confidence 45777543 23456778899999999999976544332 1122222 26899999999999754 3234
Q ss_pred HHHHHHHhcC--CCccccCccCCHHHHHHHHhhc
Q 021615 243 SLTEEILKIG--CDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 243 ~l~~~l~~~g--~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
.+.+.+...+ +..+|++.+.|+.++...+...
T Consensus 71 ~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 71 KWIEYFEEQGIKALAINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred HHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHH
Confidence 4555554433 3557999999999998876544
No 384
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.86 E-value=5.7e-05 Score=69.05 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=59.1
Q ss_pred hhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC--CCccccCcc
Q 021615 185 LRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTSETE 261 (310)
Q Consensus 185 l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g--~~~~sa~~~ 261 (310)
+.++|++++|+|+.++. +...++.++..+.. .++|.++|+||+|+.+..+. ..........+ +..+|++++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~-----~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA-----AGIEPVIVLTKADLLDDEEE-ELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH-----cCCCEEEEEEHHHCCChHHH-HHHHHHHHhCCCeEEEEECCCC
Confidence 46899999999998876 55666666655554 36899999999999765321 22222233344 345899999
Q ss_pred CCHHHHHHHHhh
Q 021615 262 LSSEDAVKSLST 273 (310)
Q Consensus 262 ~gi~~l~~~l~~ 273 (310)
.|+++++..+..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999988764
No 385
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.82 E-value=0.00029 Score=68.08 Aligned_cols=143 Identities=22% Similarity=0.246 Sum_probs=81.7
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCC-------------------------------
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDP------------------------------- 148 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~------------------------------- 148 (310)
.+++|++||.-.+||||.+..+..+..-. +.-.-.|..|...++.-.|
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R 386 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR 386 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence 56899999999999999999998765322 2222223333222221000
Q ss_pred -------------------CCCCccCCCceEEEeCCCCCcccc-----C-CchHHHHHHHHhhhcCEEEEecccCCCCcH
Q 021615 149 -------------------TLGAEKYSSEATLADLPGLIEGAH-----L-GKGLGRNFLRHLRRTRLLVHVIDAAAENPV 203 (310)
Q Consensus 149 -------------------~~~~~~~~~~~~i~DtPG~~~~~~-----~-~~~l~~~~~~~l~~~d~il~VvD~s~~~~~ 203 (310)
..+. . -.+.+++|.||.+.... . ...+.+.-..|+.+.++||+++--.+-+..
T Consensus 387 Mr~sVr~GkTVSnEvIsltVKGP-g-LqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE 464 (980)
T KOG0447|consen 387 MRKNVKEGCTVSPETISLNVKGP-G-LQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE 464 (980)
T ss_pred HHhcccCCcccccceEEEeecCC-C-cceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence 0000 0 03578999999987522 1 123444455677888888888743222211
Q ss_pred HHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc-HhHHHHHHHHHH
Q 021615 204 NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-RDRLQSLTEEIL 249 (310)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~-~~~~~~l~~~l~ 249 (310)
...+-..+...++ .++..|+|++|.|+.+. -.....+.+.++
T Consensus 465 --RSnVTDLVsq~DP--~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 465 --RSIVTDLVSQMDP--HGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred --hhhHHHHHHhcCC--CCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 1122233344444 67889999999999754 122345555544
No 386
>PRK14974 cell division protein FtsY; Provisional
Probab=97.81 E-value=0.00013 Score=68.08 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=52.8
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHH--HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~--~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.++++||||..... ..+-..+.. ..-..|.+++|+|+.... +........... -..--+++||+|..
T Consensus 224 DvVLIDTaGr~~~~---~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~------~~~~giIlTKlD~~ 292 (336)
T PRK14974 224 DVVLIDTAGRMHTD---ANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEA------VGIDGVILTKVDAD 292 (336)
T ss_pred CEEEEECCCccCCc---HHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhc------CCCCEEEEeeecCC
Confidence 58999999986532 122222111 122468899999997532 222222211111 12356789999986
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 269 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~ 269 (310)
..--.. .......+.+..-..+|++++++..
T Consensus 293 ~~~G~~---ls~~~~~~~Pi~~i~~Gq~v~Dl~~ 323 (336)
T PRK14974 293 AKGGAA---LSIAYVIGKPILFLGVGQGYDDLIP 323 (336)
T ss_pred CCccHH---HHHHHHHCcCEEEEeCCCChhhccc
Confidence 543222 2222334555544558888866553
No 387
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.79 E-value=0.00013 Score=62.88 Aligned_cols=95 Identities=15% Similarity=0.035 Sum_probs=51.8
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.++++||||..........--..+...+ ..+-+++|+|++.. .+++..+....... .+-=++++|.|-...
T Consensus 85 D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~------~~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 85 DLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMG--QEDLEQALAFYEAF------GIDGLILTKLDETAR 155 (196)
T ss_dssp SEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGG--GHHHHHHHHHHHHS------STCEEEEESTTSSST
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccC--hHHHHHHHHHhhcc------cCceEEEEeecCCCC
Confidence 5899999998654221111112333333 46788999998853 33444443333321 233566999998654
Q ss_pred HhHHHHHHHHHHhcCCCccccCccCCH
Q 021615 238 RDRLQSLTEEILKIGCDKVTSETELSS 264 (310)
Q Consensus 238 ~~~~~~l~~~l~~~g~~~~sa~~~~gi 264 (310)
- -.+.......+.+..-..+|+.+
T Consensus 156 ~---G~~l~~~~~~~~Pi~~it~Gq~V 179 (196)
T PF00448_consen 156 L---GALLSLAYESGLPISYITTGQRV 179 (196)
T ss_dssp T---HHHHHHHHHHTSEEEEEESSSST
T ss_pred c---ccceeHHHHhCCCeEEEECCCCh
Confidence 3 23344445555555555556555
No 388
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.79 E-value=0.00017 Score=66.78 Aligned_cols=82 Identities=28% Similarity=0.349 Sum_probs=52.1
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHH-----HhhhcCEEEEecccCCCCcHHH--HHHHHHHHHhcCCCCCCCCEEEEEe
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLR-----HLRRTRLLVHVIDAAAENPVND--YRTVKEELRMYNPDYLERPFIVVLN 230 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~-----~l~~~d~il~VvD~s~~~~~~~--~~~~~~~l~~~~~~~~~~p~ivv~N 230 (310)
...++-|-|+-+.. .+...|.. ..-.-|.++-|||+........ .+....++.. .=++|+|
T Consensus 86 D~ivIEtTGlA~P~----pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~--------AD~ivlN 153 (323)
T COG0523 86 DRLVIETTGLADPA----PVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF--------ADVIVLN 153 (323)
T ss_pred CEEEEeCCCCCCCH----HHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh--------CcEEEEe
Confidence 57899999987652 23333332 1124588999999987433221 2334444443 2288899
Q ss_pred CCCCCCcHhHHHHHHHHHHhcC
Q 021615 231 KIDLPEARDRLQSLTEEILKIG 252 (310)
Q Consensus 231 K~Dl~~~~~~~~~l~~~l~~~g 252 (310)
|+|+.++.+ .+.+.+.+..+.
T Consensus 154 K~Dlv~~~~-l~~l~~~l~~ln 174 (323)
T COG0523 154 KTDLVDAEE-LEALEARLRKLN 174 (323)
T ss_pred cccCCCHHH-HHHHHHHHHHhC
Confidence 999998764 777777777654
No 389
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.78 E-value=0.00017 Score=69.44 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=56.6
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhh---hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLR---RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 234 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~---~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 234 (310)
.++|+||||..... ......+...+. ...-..+|++++. ...++..+. ..|.. .+ +--++++|+|-
T Consensus 301 DlVlIDt~G~~~~d---~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~---~~f~~--~~-~~~vI~TKlDe 369 (424)
T PRK05703 301 DVILIDTAGRSQRD---KRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIY---KHFSR--LP-LDGLIFTKLDE 369 (424)
T ss_pred CEEEEeCCCCCCCC---HHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHH---HHhCC--CC-CCEEEEecccc
Confidence 78999999985432 112222222222 2345677788763 223333333 33321 11 23578999998
Q ss_pred CCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHH
Q 021615 235 PEARDRLQSLTEEILKIGCDKVTSETELSSEDAVKS 270 (310)
Q Consensus 235 ~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~ 270 (310)
... .-.+...+...+++..-..+|.++.+-+..
T Consensus 370 t~~---~G~i~~~~~~~~lPv~yit~Gq~VpdDl~~ 402 (424)
T PRK05703 370 TSS---LGSILSLLIESGLPISYLTNGQRVPDDIKV 402 (424)
T ss_pred ccc---ccHHHHHHHHHCCCEEEEeCCCCChhhhhh
Confidence 644 334566666777877777788887555543
No 390
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00019 Score=67.88 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=55.1
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHh--hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l--~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.++|+||||..... ...-....+.+ ...+.+++|+|++.. ..+.. +.+..|.. . ..-=++++|.|-.
T Consensus 322 DvVLIDTaGRs~kd---~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~---~i~~~F~~--~-~idglI~TKLDET 390 (436)
T PRK11889 322 DYILIDTAGKNYRA---SETVEEMIETMGQVEPDYICLTLSASMK--SKDMI---EIITNFKD--I-HIDGIVFTKFDET 390 (436)
T ss_pred CEEEEeCccccCcC---HHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHH---HHHHHhcC--C-CCCEEEEEcccCC
Confidence 68999999985432 22222222222 234678888988632 22322 33344432 1 2345778999987
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVKS 270 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~ 270 (310)
..- =.+.......+++..-...|+++.+-+..
T Consensus 391 ~k~---G~iLni~~~~~lPIsyit~GQ~VPeDI~~ 422 (436)
T PRK11889 391 ASS---GELLKIPAVSSAPIVLMTDGQDVKKNIHI 422 (436)
T ss_pred CCc---cHHHHHHHHHCcCEEEEeCCCCCCcchhh
Confidence 542 23334444556666666677777766654
No 391
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.75 E-value=0.0001 Score=68.96 Aligned_cols=80 Identities=26% Similarity=0.308 Sum_probs=47.9
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHH-Hh---hhcCEEEEecccCCCCc--H--------------------HH-HHHHH
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLR-HL---RRTRLLVHVIDAAAENP--V--------------------ND-YRTVK 210 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~-~l---~~~d~il~VvD~s~~~~--~--------------------~~-~~~~~ 210 (310)
...++.|.|.-+. ..+...|.. .+ -+.|.++.|+|+..... + .. ...+.
T Consensus 94 d~IvIEtsG~a~P----~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (341)
T TIGR02475 94 DHILIETSGLALP----KPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFE 169 (341)
T ss_pred CEEEEeCCCCCCH----HHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHH
Confidence 6789999998764 334444421 11 24688999999974211 0 00 01222
Q ss_pred HHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh
Q 021615 211 EELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK 250 (310)
Q Consensus 211 ~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~ 250 (310)
.++.. .=++|+||+|+.++. ..+.+.+.+..
T Consensus 170 ~Qi~~--------AD~IvlnK~Dl~~~~-~l~~~~~~l~~ 200 (341)
T TIGR02475 170 DQLAC--------ADLVILNKADLLDAA-GLARVRAEIAA 200 (341)
T ss_pred HHHHh--------CCEEEEeccccCCHH-HHHHHHHHHHH
Confidence 33332 237889999999764 46677777765
No 392
>PRK12288 GTPase RsgA; Reviewed
Probab=97.74 E-value=0.00019 Score=67.35 Aligned_cols=83 Identities=23% Similarity=0.158 Sum_probs=60.2
Q ss_pred hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--HHHHHHHHHHhcCC--CccccCcc
Q 021615 186 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGC--DKVTSETE 261 (310)
Q Consensus 186 ~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~l~~~l~~~g~--~~~sa~~~ 261 (310)
.++|.+++|++......+..++.|+..... .++|.++|+||+|+.+..+ ....+.+.+...++ ..+|++++
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACET-----LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHh-----cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 568999999998766666666666554432 4689999999999986432 23344445555554 44799999
Q ss_pred CCHHHHHHHHhh
Q 021615 262 LSSEDAVKSLST 273 (310)
Q Consensus 262 ~gi~~l~~~l~~ 273 (310)
.|+++++..+..
T Consensus 194 ~GideL~~~L~~ 205 (347)
T PRK12288 194 EGLEELEAALTG 205 (347)
T ss_pred cCHHHHHHHHhh
Confidence 999999998864
No 393
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00042 Score=66.39 Aligned_cols=97 Identities=11% Similarity=0.137 Sum_probs=55.1
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhh---hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLR---RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 234 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~---~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 234 (310)
.+.++||+|..... ..+... +..+. ...-.++|+|++.. .+++. +.+..|.. -..-=++++|.|-
T Consensus 271 d~VLIDTaGrsqrd---~~~~~~-l~~l~~~~~~~~~~LVl~at~~--~~~~~---~~~~~f~~---~~~~~~I~TKlDE 338 (420)
T PRK14721 271 HMVLIDTVGMSQRD---QMLAEQ-IAMLSQCGTQVKHLLLLNATSS--GDTLD---EVISAYQG---HGIHGCIITKVDE 338 (420)
T ss_pred CEEEecCCCCCcch---HHHHHH-HHHHhccCCCceEEEEEcCCCC--HHHHH---HHHHHhcC---CCCCEEEEEeeeC
Confidence 67999999986532 112222 22232 23456788888742 23333 33344432 1234577899997
Q ss_pred CCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615 235 PEARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 269 (310)
Q Consensus 235 ~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~ 269 (310)
... .-.+...+...+++..-..+|..+.+-+.
T Consensus 339 t~~---~G~~l~~~~~~~lPi~yvt~Gq~VP~Dl~ 370 (420)
T PRK14721 339 AAS---LGIALDAVIRRKLVLHYVTNGQKVPEDLH 370 (420)
T ss_pred CCC---ccHHHHHHHHhCCCEEEEECCCCchhhhh
Confidence 654 33444555566677766777888755443
No 394
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.69 E-value=0.00016 Score=67.20 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=48.8
Q ss_pred CceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcH----------HHHHHHHHHHHhcCCCCCCCCEE
Q 021615 157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV----------NDYRTVKEELRMYNPDYLERPFI 226 (310)
Q Consensus 157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~----------~~~~~~~~~l~~~~~~~~~~p~i 226 (310)
..+.+.|++|+.. -.+.|...++.+++++||++.++.+.. .....+.+.+-. .+-..+.++|
T Consensus 195 ~~f~~~DvGGQRs-------eRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n-~~~F~~tsii 266 (354)
T KOG0082|consen 195 LKFRMFDVGGQRS-------ERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN-NKWFANTSII 266 (354)
T ss_pred CceEEEeCCCcHH-------HhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc-CcccccCcEE
Confidence 3688999999743 344666778999999999999873211 111223333332 2234578999
Q ss_pred EEEeCCCCCCc
Q 021615 227 VVLNKIDLPEA 237 (310)
Q Consensus 227 vv~NK~Dl~~~ 237 (310)
+++||.|+..+
T Consensus 267 LFLNK~DLFeE 277 (354)
T KOG0082|consen 267 LFLNKKDLFEE 277 (354)
T ss_pred EEeecHHHHHH
Confidence 99999999753
No 395
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.69 E-value=0.00011 Score=49.78 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=28.8
Q ss_pred cCEEEEecccCC--CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615 188 TRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 233 (310)
Q Consensus 188 ~d~il~VvD~s~--~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 233 (310)
.++++|++|.|. +.+.++-..++++++..- .++|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F---~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF---PNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT---TTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc---CCCCEEEEEeccC
Confidence 579999999987 556666667778887643 4899999999998
No 396
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.69 E-value=0.00021 Score=62.46 Aligned_cols=44 Identities=27% Similarity=0.393 Sum_probs=29.6
Q ss_pred hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCC-CCEEEEEeCCCCC
Q 021615 186 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPFIVVLNKIDLP 235 (310)
Q Consensus 186 ~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~-~p~ivv~NK~Dl~ 235 (310)
+.+|.++.|+|.+.. +....+.+.+.... .+ +++.+|+||+|-.
T Consensus 154 ~~vD~vivVvDpS~~-sl~taeri~~L~~e-----lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 154 EGVDLVIVVVDPSYK-SLRTAERIKELAEE-----LGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCCCEEEEEeCCcHH-HHHHHHHHHHHHHH-----hCCceEEEEEeeccch
Confidence 578999999999853 33333434322222 24 8899999999965
No 397
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.67 E-value=0.00013 Score=67.53 Aligned_cols=136 Identities=16% Similarity=0.195 Sum_probs=71.0
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCC----CCC-CCCCC-ceeec------cceEeeCC-----CCCC------------
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAK----PDI-ADYPF-TTLMP------NLGRLDGD-----PTLG------------ 151 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~----~~i-~~~~~-tT~~~------~~~~v~~~-----~~~~------------ 151 (310)
.++-.+|.|+-|||||||+|+++... ..+ .+..+ ..++. ....+... +...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 45667889999999999999998542 111 12111 11100 00111100 0000
Q ss_pred ---CccCCCceEEEeCCCCCccccCCchHHHHHHH--Hh---hhcCEEEEecccCCCCc-HHHHHHHHHHHHhcCCCCCC
Q 021615 152 ---AEKYSSEATLADLPGLIEGAHLGKGLGRNFLR--HL---RRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLE 222 (310)
Q Consensus 152 ---~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~--~l---~~~d~il~VvD~s~~~~-~~~~~~~~~~l~~~~~~~~~ 222 (310)
...+.....++.|.|.-+. ..+...|+. .+ -+.+.++.|+|+..... .........++..
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p----~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------- 151 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADP----GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------- 151 (318)
T ss_pred HHhccCCCCCEEEEECCCccCH----HHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------
Confidence 0001235688999998654 233333321 11 23588999999975221 1112223334432
Q ss_pred CCEEEEEeCCCCCCcHhHHHHHHHHHHhc
Q 021615 223 RPFIVVLNKIDLPEARDRLQSLTEEILKI 251 (310)
Q Consensus 223 ~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~ 251 (310)
.=++|+||+|+.++. +.+.+.++.+
T Consensus 152 -AD~IvlnK~Dl~~~~---~~~~~~l~~l 176 (318)
T PRK11537 152 -ADRILLTKTDVAGEA---EKLRERLARI 176 (318)
T ss_pred -CCEEEEeccccCCHH---HHHHHHHHHh
Confidence 227889999998753 4555555543
No 398
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.67 E-value=0.0001 Score=68.29 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=49.9
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC----------cHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN----------PVNDYRTVKEELRMYNPDYLERPFIV 227 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~----------~~~~~~~~~~~l~~~~~~~~~~p~iv 227 (310)
.+.+||++|+.. ..+.|..+++.+++++||+|.++.+ ...+...+.+.+-. .+.+.+.|+++
T Consensus 162 ~~~~~DvgGq~~-------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~-~~~~~~~pill 233 (317)
T cd00066 162 KFRMFDVGGQRS-------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN-SRWFANTSIIL 233 (317)
T ss_pred EEEEECCCCCcc-------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh-CccccCCCEEE
Confidence 689999999843 3446777889999999999998742 22233333333332 23345799999
Q ss_pred EEeCCCCCC
Q 021615 228 VLNKIDLPE 236 (310)
Q Consensus 228 v~NK~Dl~~ 236 (310)
++||.|+..
T Consensus 234 ~~NK~D~f~ 242 (317)
T cd00066 234 FLNKKDLFE 242 (317)
T ss_pred EccChHHHH
Confidence 999999874
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.64 E-value=0.00047 Score=57.88 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=38.9
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.+.++||||...........-..+ ......+.+++|+|+... .+..+........ .+ ..-+|+||+|....
T Consensus 84 d~viiDt~g~~~~~~~~l~~l~~l-~~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~-----~~-~~~viltk~D~~~~ 154 (173)
T cd03115 84 DVVIVDTAGRLQIDENLMEELKKI-KRVVKPDEVLLVVDAMTG--QDAVNQAKAFNEA-----LG-ITGVILTKLDGDAR 154 (173)
T ss_pred CEEEEECcccchhhHHHHHHHHHH-HhhcCCCeEEEEEECCCC--hHHHHHHHHHHhh-----CC-CCEEEEECCcCCCC
Confidence 589999999753211000001112 222348999999998643 2333333222222 12 35677899998764
No 400
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00034 Score=66.70 Aligned_cols=102 Identities=14% Similarity=0.043 Sum_probs=54.8
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhh--hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~--~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.++++||||..........--..+++... ...-.++|+|++... ++.. +.+..|.. . .+-=+|++|.|-.
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~---~~~~~f~~--~-~~~glIlTKLDEt 372 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTL---TVLKAYES--L-NYRRILLTKLDEA 372 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHH---HHHHHhcC--C-CCCEEEEEcccCC
Confidence 68999999986432211111112222221 123578899987542 2222 33334321 1 2346778999976
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVKS 270 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~ 270 (310)
..- =.+.......+.+..-...|+++.+-+..
T Consensus 373 ~~~---G~il~i~~~~~lPI~ylt~GQ~VPeDi~~ 404 (432)
T PRK12724 373 DFL---GSFLELADTYSKSFTYLSVGQEVPFDILN 404 (432)
T ss_pred CCc---cHHHHHHHHHCCCEEEEecCCCCCCCHHH
Confidence 542 23344445566666666667777665544
No 401
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00036 Score=65.70 Aligned_cols=95 Identities=11% Similarity=-0.017 Sum_probs=51.3
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHH--hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~--l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.++|+||||..... ...-...... ....+.+++|+++.. ...+.. +.+..|.. -.+--++++|.|-.
T Consensus 287 D~VLIDTAGr~~~d---~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~---~i~~~f~~---l~i~glI~TKLDET 355 (407)
T PRK12726 287 DHILIDTVGRNYLA---EESVSEISAYTDVVHPDLTCFTFSSGM--KSADVM---TILPKLAE---IPIDGFIITKMDET 355 (407)
T ss_pred CEEEEECCCCCccC---HHHHHHHHHHhhccCCceEEEECCCcc--cHHHHH---HHHHhcCc---CCCCEEEEEcccCC
Confidence 78999999985432 1111121111 123467778887642 222322 33334432 12346779999986
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSED 266 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~ 266 (310)
.. .=.+.......+.+..-...|+.+.+
T Consensus 356 ~~---~G~~Lsv~~~tglPIsylt~GQ~Vpd 383 (407)
T PRK12726 356 TR---IGDLYTVMQETNLPVLYMTDGQNITE 383 (407)
T ss_pred CC---ccHHHHHHHHHCCCEEEEecCCCCCc
Confidence 54 23334444556666666666776665
No 402
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.58 E-value=0.00013 Score=68.89 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=54.5
Q ss_pred hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHH-HHHHHHHhcCC-----Cc
Q 021615 185 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQ-SLTEEILKIGC-----DK 255 (310)
Q Consensus 185 l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~-~l~~~l~~~g~-----~~ 255 (310)
...++++++|+|+.+... .|..++..+. .++|+++|+||+|+..... ... .+.+.+...++ ..
T Consensus 61 ~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~---~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~ 132 (360)
T TIGR03597 61 GDSNALIVYVVDIFDFEG-----SLIPELKRFV---GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIIL 132 (360)
T ss_pred ccCCcEEEEEEECcCCCC-----CccHHHHHHh---CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEE
Confidence 467899999999976431 1333444432 2689999999999975422 222 22234455554 34
Q ss_pred cccCccCCHHHHHHHHhh
Q 021615 256 VTSETELSSEDAVKSLST 273 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~ 273 (310)
+||+++.|+++++..+..
T Consensus 133 vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 133 VSAKKGNGIDELLDKIKK 150 (360)
T ss_pred ecCCCCCCHHHHHHHHHH
Confidence 899999999999999864
No 403
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.58 E-value=0.0016 Score=52.83 Aligned_cols=106 Identities=21% Similarity=0.219 Sum_probs=59.7
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhh
Q 021615 107 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 186 (310)
Q Consensus 107 lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~ 186 (310)
.-+.+|+||||+--.+...-... ...+ ..++.+...+...| .++++|+|+.... .....+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~---~~~~-----~~vd~D~~~~~~~y--d~VIiD~p~~~~~---------~~~~~l~ 65 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKL---GKRV-----LLLDADLGLANLDY--DYIIIDTGAGISD---------NVLDFFL 65 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHC---CCcE-----EEEECCCCCCCCCC--CEEEEECCCCCCH---------HHHHHHH
Confidence 34789999999877665331100 0111 11222211111112 7899999986432 2234566
Q ss_pred hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 187 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 187 ~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.||.+++|++.+... ..+.....+.+.... ...++.+|+|+++..
T Consensus 66 ~aD~vviv~~~~~~s-~~~~~~~l~~l~~~~---~~~~~~lVvN~~~~~ 110 (139)
T cd02038 66 AADEVIVVTTPEPTS-ITDAYALIKKLAKQL---RVLNFRVVVNRAESP 110 (139)
T ss_pred hCCeEEEEcCCChhH-HHHHHHHHHHHHHhc---CCCCEEEEEeCCCCH
Confidence 899999999987433 333333444454321 245678999999754
No 404
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00022 Score=66.07 Aligned_cols=140 Identities=23% Similarity=0.268 Sum_probs=75.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCC--------------CCCceeeccceEeeCCCCCCCccC-------------C
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIAD--------------YPFTTLMPNLGRLDGDPTLGAEKY-------------S 156 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~--------------~~~tT~~~~~~~v~~~~~~~~~~~-------------~ 156 (310)
+|+++|--.+|||||+-.|+..+..-++ ..+.|.......+..+..-....| .
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SS 248 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSS 248 (591)
T ss_pred EEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhc
Confidence 6999999999999999999865421110 001111110001111100000111 1
Q ss_pred CceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
+-++++|.+|+.++.+-.. ...-. ...|..++|+.+.....+...+.+- .+.. .+.|++++++|+|+.+
T Consensus 249 KlvTfiDLAGh~kY~~TTi---~gLtg--Y~Ph~A~LvVsA~~Gi~~tTrEHLg-l~~A-----L~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 249 KLVTFIDLAGHAKYQKTTI---HGLTG--YTPHFACLVVSADRGITWTTREHLG-LIAA-----LNIPFFVLVTKMDLVD 317 (591)
T ss_pred ceEEEeecccchhhheeee---eeccc--CCCceEEEEEEcCCCCccccHHHHH-HHHH-----hCCCeEEEEEeecccc
Confidence 3589999999876532100 00011 1347788888887765544433332 2222 4799999999999987
Q ss_pred c---HhHHHHHHHHHHhcCCC
Q 021615 237 A---RDRLQSLTEEILKIGCD 254 (310)
Q Consensus 237 ~---~~~~~~l~~~l~~~g~~ 254 (310)
. +....++...+...|+.
T Consensus 318 ~~~~~~tv~~l~nll~~~Gc~ 338 (591)
T KOG1143|consen 318 RQGLKKTVKDLSNLLAKAGCT 338 (591)
T ss_pred chhHHHHHHHHHHHHhhcCcc
Confidence 6 23344455555444443
No 405
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.58 E-value=0.00022 Score=66.80 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=50.2
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC----------cHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN----------PVNDYRTVKEELRMYNPDYLERPFIV 227 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~----------~~~~~~~~~~~l~~~~~~~~~~p~iv 227 (310)
.+.+||+.|+.. ..+.|..++..+++++||+|.++.+ ...+...+++.+-. .+.+.+.|+++
T Consensus 185 ~~~~~DvgGqr~-------~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~-~~~~~~~piil 256 (342)
T smart00275 185 FFRMFDVGGQRS-------ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN-SRWFANTSIIL 256 (342)
T ss_pred EEEEEecCCchh-------hhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc-CccccCCcEEE
Confidence 678999999843 3456777889999999999999732 23333333344433 23446799999
Q ss_pred EEeCCCCCC
Q 021615 228 VLNKIDLPE 236 (310)
Q Consensus 228 v~NK~Dl~~ 236 (310)
++||.|+..
T Consensus 257 ~~NK~D~~~ 265 (342)
T smart00275 257 FLNKIDLFE 265 (342)
T ss_pred EEecHHhHH
Confidence 999999874
No 406
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.55 E-value=0.00071 Score=65.78 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=35.9
Q ss_pred CCCEEEEEeCCCCCCc--------HhHHHHHHHHHH----hcC--CCccccCccCCHHHHHHHHhhc
Q 021615 222 ERPFIVVLNKIDLPEA--------RDRLQSLTEEIL----KIG--CDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 222 ~~p~ivv~NK~Dl~~~--------~~~~~~l~~~l~----~~g--~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
+.|++||++|+|.... ++.++-+...++ .+| +..+|++...++.-++.++...
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~ 262 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR 262 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence 5799999999997431 233444444454 334 4557999999998888776543
No 407
>PRK01889 GTPase RsgA; Reviewed
Probab=97.53 E-value=8.6e-05 Score=69.93 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=23.4
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+..-.++++|.+|+|||||+|.|.+..
T Consensus 193 ~~g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 193 SGGKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred hcCCEEEEECCCCccHHHHHHHHHHhc
Confidence 344579999999999999999999864
No 408
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.51 E-value=0.0018 Score=49.97 Aligned_cols=104 Identities=20% Similarity=0.239 Sum_probs=59.4
Q ss_pred EEEE-cCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 105 VGLV-GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 105 V~lv-G~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
|+++ +..|+||||+...|...-.... ......++.++... ..+.++|||+.... ....
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~-------~~~~~l~d~d~~~~-----~D~IIiDtpp~~~~---------~~~~ 60 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEA-------GRRVLLVDLDLQFG-----DDYVVVDLGRSLDE---------VSLA 60 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcC-------CCcEEEEECCCCCC-----CCEEEEeCCCCcCH---------HHHH
Confidence 3444 4589999998877764321110 11111233332211 26899999987542 2234
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 231 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK 231 (310)
.+..||.+++|++.+. ........+.+.++..... ....+.+|+|+
T Consensus 61 ~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~~~~-~~~~~~lVvNr 106 (106)
T cd03111 61 ALDQADRVFLVTQQDL-PSIRNAKRLLELLRVLDYS-LPAKIELVLNR 106 (106)
T ss_pred HHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHcCCC-CcCceEEEecC
Confidence 5668999999998774 3344455555666554321 13467788885
No 409
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.00056 Score=69.78 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=52.0
Q ss_pred ceEEEeCCCCCccccCCchHHHHHH--HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFL--RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~--~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.++|+||||..... ..+..... ......+-.++|+|++.. .+++. +.++.|.....-.+-=+|++|.|-.
T Consensus 265 D~VLIDTAGRs~~d---~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~---~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 265 HLVLIDTVGMSQRD---RNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLN---EVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CEEEEeCCCCCccC---HHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHH---HHHHHHhhcccCCCCEEEEeccCCC
Confidence 68999999965432 22222221 112234567899998742 33333 2333432110012346779999977
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSS 264 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi 264 (310)
..- =.+.......+++..-..+|+++
T Consensus 337 ~~~---G~iL~i~~~~~lPI~yit~GQ~V 362 (767)
T PRK14723 337 THL---GPALDTVIRHRLPVHYVSTGQKV 362 (767)
T ss_pred CCc---cHHHHHHHHHCCCeEEEecCCCC
Confidence 542 23344445556666666677777
No 410
>PRK13796 GTPase YqeH; Provisional
Probab=97.49 E-value=0.00032 Score=66.29 Aligned_cols=86 Identities=17% Similarity=0.282 Sum_probs=56.7
Q ss_pred HHHHhhhcC-EEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH---hHHHHH-HHHHHhcCC--
Q 021615 181 FLRHLRRTR-LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSL-TEEILKIGC-- 253 (310)
Q Consensus 181 ~~~~l~~~d-~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~l-~~~l~~~g~-- 253 (310)
.++.+...+ ++++|+|+.+.. ..|..++..+. .++|+++|+||+|+.... +....+ .......++
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~---~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~ 133 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV---GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRP 133 (365)
T ss_pred HHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh---CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCc
Confidence 456666666 999999998733 12334454432 268999999999997532 122222 223344444
Q ss_pred ---CccccCccCCHHHHHHHHhhc
Q 021615 254 ---DKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 254 ---~~~sa~~~~gi~~l~~~l~~~ 274 (310)
..+||+.+.|+++++..+...
T Consensus 134 ~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 134 VDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999998543
No 411
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00022 Score=64.37 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=66.1
Q ss_pred CceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 157 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 157 ~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
+.+.++|+||+.-- -..++.-..--|+.++++.+....+..+...-+..++.. .-+.++++-||+|+..
T Consensus 125 RHVSfVDCPGHDiL-------MaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM----~LkhiiilQNKiDli~ 193 (466)
T KOG0466|consen 125 RHVSFVDCPGHDIL-------MATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM----KLKHIIILQNKIDLIK 193 (466)
T ss_pred EEEEeccCCchHHH-------HHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh----hhceEEEEechhhhhh
Confidence 35789999998421 111222222347777787766532211111111122221 1367899999999987
Q ss_pred cH---hHHHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhhccCC
Q 021615 237 AR---DRLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 237 ~~---~~~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
+. ++.+.+..++.. ..+.++||.-+.+++.+.+++....-.
T Consensus 194 e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 194 ESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred HHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 53 345555555552 246668999999999999998876644
No 412
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.00097 Score=60.30 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=56.1
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHh--hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l--~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.+.++||||..... ...-..+...+ ...+-+++|+|++.. .++. .+.++.|.. -.+--++++|.|-.
T Consensus 156 D~ViIDt~Gr~~~~---~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~---~~~~~~f~~---~~~~~~I~TKlDet 224 (270)
T PRK06731 156 DYILIDTAGKNYRA---SETVEEMIETMGQVEPDYICLTLSASMK--SKDM---IEIITNFKD---IHIDGIVFTKFDET 224 (270)
T ss_pred CEEEEECCCCCcCC---HHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHH---HHHHHHhCC---CCCCEEEEEeecCC
Confidence 78999999986432 12222222222 234678999998742 2222 233444432 13345778999987
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHHHHHH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVKS 270 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~ 270 (310)
..- -.+.......+.+..-..+|+++.+-+..
T Consensus 225 ~~~---G~~l~~~~~~~~Pi~~it~Gq~vp~di~~ 256 (270)
T PRK06731 225 ASS---GELLKIPAVSSAPIVLMTDGQDVKKNIHI 256 (270)
T ss_pred CCc---cHHHHHHHHHCcCEEEEeCCCCCCcchhh
Confidence 542 23334444556666666677777766654
No 413
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.43 E-value=0.0012 Score=62.28 Aligned_cols=155 Identities=14% Similarity=0.139 Sum_probs=74.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCC--CC-CCCCCceeecc-ceEee------------CCCCCCCccC--------CC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKP--DI-ADYPFTTLMPN-LGRLD------------GDPTLGAEKY--------SS 157 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~--~i-~~~~~tT~~~~-~~~v~------------~~~~~~~~~~--------~~ 157 (310)
...|++||++||||||-+--|...-. .. ....+.|.+.. +|.++ .........+ ..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 45689999999999999887753321 00 11122232211 11100 0000000000 13
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPE 236 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~ 236 (310)
.++++||.|.-........--..+.... ...-..+|++++. ..++++. .+..|.. .| --++++|+|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~-~~i~~~Lvlsat~--K~~dlke---i~~~f~~----~~i~~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVS-HSIEVYLVLSATT--KYEDLKE---IIKQFSL----FPIDGLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhcc-ccceEEEEEecCc--chHHHHH---HHHHhcc----CCcceeEEEcccccC
Confidence 6899999997543221111111222222 2233455666653 2344443 3444432 22 256789999775
Q ss_pred cHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615 237 ARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 269 (310)
Q Consensus 237 ~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~ 269 (310)
. +-.+...+...+.+..--..|+.+.+-+.
T Consensus 353 s---~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~ 382 (407)
T COG1419 353 S---LGNLFSLMYETRLPVSYVTNGQRVPEDIV 382 (407)
T ss_pred c---hhHHHHHHHHhCCCeEEEeCCCCCCchhh
Confidence 4 33344444555555555556676666554
No 414
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.42 E-value=0.00069 Score=65.97 Aligned_cols=95 Identities=13% Similarity=0.151 Sum_probs=51.9
Q ss_pred ceEEEeCCCCCccccCCchHHHH--HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~--~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.+.++||+|...... .+... ++.......-.++|+|+.... . .+.+.+..|.. ....-+|+||+|-.
T Consensus 336 d~VLIDTaGr~~~d~---~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~---~l~~i~~~f~~---~~~~g~IlTKlDet 404 (484)
T PRK06995 336 HIVLIDTIGMSQRDR---MVSEQIAMLHGAGAPVKRLLLLNATSHG--D---TLNEVVQAYRG---PGLAGCILTKLDEA 404 (484)
T ss_pred CeEEeCCCCcChhhH---HHHHHHHHHhccCCCCeeEEEEeCCCcH--H---HHHHHHHHhcc---CCCCEEEEeCCCCc
Confidence 579999999654321 11111 122111122267888887432 2 23334444432 22445778999976
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSED 266 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~ 266 (310)
.. .-.+.......+++..-..+|+++.+
T Consensus 405 ~~---~G~~l~i~~~~~lPI~yvt~GQ~VPe 432 (484)
T PRK06995 405 AS---LGGALDVVIRYKLPLHYVSNGQRVPE 432 (484)
T ss_pred cc---chHHHHHHHHHCCCeEEEecCCCChh
Confidence 54 33444555566677666777888833
No 415
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.0016 Score=61.85 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=54.8
Q ss_pred ceEEEeCCCCCccccCCchHH--HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLG--RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~--~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.++++||||...... ..+. ..++.......-.++|+|++.. ..++. +.+..|.. -.+-=++++|.|-.
T Consensus 256 DlVLIDTaGr~~~~~--~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~---~~~~~~~~---~~~~~~I~TKlDet 325 (388)
T PRK12723 256 DLVLVDTIGKSPKDF--MKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVK---EIFHQFSP---FSYKTVIFTKLDET 325 (388)
T ss_pred CEEEEcCCCCCccCH--HHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHH---HHHHHhcC---CCCCEEEEEeccCC
Confidence 689999999764311 1111 1222222212257899999864 23333 34444421 12446778999986
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 269 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~ 269 (310)
..- =.+.......+++..-...|+.+.+-+.
T Consensus 326 ~~~---G~~l~~~~~~~~Pi~yit~Gq~vPeDl~ 356 (388)
T PRK12723 326 TCV---GNLISLIYEMRKEVSYVTDGQIVPHNIS 356 (388)
T ss_pred Ccc---hHHHHHHHHHCCCEEEEeCCCCChhhhh
Confidence 542 3334444555666666667788754443
No 416
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.41 E-value=0.00074 Score=65.13 Aligned_cols=95 Identities=13% Similarity=0.129 Sum_probs=49.1
Q ss_pred ceEEEeCCCCCccccCCchHHHHH--HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~--~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.++|+||||..... ..+-..+ +..+..+|.+++|+|++.. .+.+. ....+.... ...-+|+||+|-.
T Consensus 177 DvVIIDTAGr~~~d---~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~----~a~~F~~~l--~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHALE---EDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKN----QAKAFHEAV--GIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccch---HHHHHHHHHHHHHhcccceeEEEecccc--HHHHH----HHHHHHhcC--CCCEEEEecccCC
Confidence 68999999975431 2222111 1223467899999998764 22222 223332111 1346788999976
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSED 266 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~ 266 (310)
..-- .........+.+..-..+|+.+++
T Consensus 246 a~~G---~~ls~~~~~~~Pi~fig~Ge~v~D 273 (437)
T PRK00771 246 AKGG---GALSAVAETGAPIKFIGTGEKIDD 273 (437)
T ss_pred Cccc---HHHHHHHHHCcCEEEEecCCCccc
Confidence 4321 222222334444444444555533
No 417
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.31 E-value=0.00099 Score=62.06 Aligned_cols=125 Identities=24% Similarity=0.185 Sum_probs=72.1
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC---C-----------CCceeeccceEeeCCCCCCC---------cc--
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD---Y-----------PFTTLMPNLGRLDGDPTLGA---------EK-- 154 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~---~-----------~~tT~~~~~~~v~~~~~~~~---------~~-- 154 (310)
+.-..|+..|.-++|||||+-.|+-.++.-++ . .+-|.+.....+.++....- ..
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 34456899999999999999988754432211 0 11111222222222111000 00
Q ss_pred ----CCCceEEEeCCCCCccccCCchHHHHHHHHh--hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEE
Q 021615 155 ----YSSEATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVV 228 (310)
Q Consensus 155 ----~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l--~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv 228 (310)
-++-+.++||-|++.. -+..++-+ .+.|-.++|+-+.+..+.-.-+.+--.+. .+.|+++|
T Consensus 195 vv~~aDklVsfVDtvGHEpw-------LrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a------~~lPviVv 261 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPW-------LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA------MELPVIVV 261 (527)
T ss_pred hhhhcccEEEEEecCCccHH-------HHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh------hcCCEEEE
Confidence 0134789999999643 11222222 46799999999888655433333322222 47899999
Q ss_pred EeCCCCCCc
Q 021615 229 LNKIDLPEA 237 (310)
Q Consensus 229 ~NK~Dl~~~ 237 (310)
++|+|+.+.
T Consensus 262 vTK~D~~~d 270 (527)
T COG5258 262 VTKIDMVPD 270 (527)
T ss_pred EEecccCcH
Confidence 999999875
No 418
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.00069 Score=71.90 Aligned_cols=130 Identities=22% Similarity=0.209 Sum_probs=67.9
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc----C
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH----L 173 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~----~ 173 (310)
-.++=-.|||+||+||||++...--.-+-. ........ .++-+.+. .+.+.-+++||.|-.-... .
T Consensus 123 yeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~---~gT~~cdw-----wf~deaVlIDtaGry~~q~s~~~~ 194 (1188)
T COG3523 123 YELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAG---PGTRNCDW-----WFTDEAVLIDTAGRYITQDSADEV 194 (1188)
T ss_pred hcCCceEEecCCCCCcchHHhcccccCcchhhhccccccC---CCCcccCc-----ccccceEEEcCCcceecccCcchh
Confidence 344446899999999999987543322211 11111111 11111121 1234789999999543221 1
Q ss_pred CchHHHHHHHHh------hhcCEEEEecccCC---CCcHHH---HHHHHHHHHhcCCCC-CCCCEEEEEeCCCCCCc
Q 021615 174 GKGLGRNFLRHL------RRTRLLVHVIDAAA---ENPVND---YRTVKEELRMYNPDY-LERPFIVVLNKIDLPEA 237 (310)
Q Consensus 174 ~~~l~~~~~~~l------~~~d~il~VvD~s~---~~~~~~---~~~~~~~l~~~~~~~-~~~p~ivv~NK~Dl~~~ 237 (310)
+...-..|+..+ +-.++|++-+|+++ .+..+. ...++.-|.+....+ ...|+.+++||+|+...
T Consensus 195 ~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 195 DRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred hHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 122222333332 33589999998876 222222 222333232222111 46899999999999863
No 419
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.27 E-value=0.0008 Score=53.16 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 021615 105 VGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~~~ 125 (310)
|.+.|+||+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 678999999999999999975
No 420
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.21 E-value=0.0004 Score=59.35 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=34.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeC
Q 021615 105 VGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDG 146 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~ 146 (310)
|+|+|++|||||||+++|....+.. ...+.||..|..+..++
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G 49 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEG 49 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCC
Confidence 7899999999999999999876554 44678898887776654
No 421
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.21 E-value=0.00047 Score=58.13 Aligned_cols=40 Identities=30% Similarity=0.415 Sum_probs=29.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceE
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGR 143 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~ 143 (310)
-|+|+|++|||||||++.|.+..+.. .....+|..|..+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~ 43 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE 43 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC
Confidence 48999999999999999999875443 33345566555444
No 422
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.17 E-value=0.0046 Score=54.27 Aligned_cols=100 Identities=10% Similarity=0.102 Sum_probs=61.0
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHH---HHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVN---DYRTVKEELRMYNPDYLERPFIVVLNKIDL 234 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~---~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl 234 (310)
.+.|+||+|..... ....+..+|++|.=.-.+..+..+ .++.+.+..+.. ....|.-|++|++.-
T Consensus 85 d~VlvDleG~as~~---------~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~---~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 85 DFVLVDLEGGASEL---------NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAE---RRDIPAAVLFTRVPA 152 (231)
T ss_pred CEEEEeCCCCCchh---------HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhh---CCCCCeeEEEecCCc
Confidence 58999999974321 122356899998866655433333 333333333222 246899999999985
Q ss_pred CCcHhHHHHHHHHHHhcCCCccccCccCCHHHHHH
Q 021615 235 PEARDRLQSLTEEILKIGCDKVTSETELSSEDAVK 269 (310)
Q Consensus 235 ~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~l~~ 269 (310)
.........+.+.+.++.+..++......+.+++.
T Consensus 153 ~~~~~~~~~~~e~~~~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 153 ARLTRAQRIISEQLESLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred chhhHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 43323333445556667777777777777777765
No 423
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.14 E-value=0.0051 Score=45.38 Aligned_cols=73 Identities=25% Similarity=0.219 Sum_probs=46.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHH
Q 021615 105 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 184 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~ 184 (310)
+++.|.+|+||||+...+...-.. . ......++ .+.++|+|+....... + ....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~-------g~~v~~~~------------d~iivD~~~~~~~~~~---~---~~~~ 55 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-R-------GKRVLLID------------DYVLIDTPPGLGLLVL---L---CLLA 55 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-C-------CCeEEEEC------------CEEEEeCCCCccchhh---h---hhhh
Confidence 678899999999999988754211 0 00111111 4799999998654210 0 1234
Q ss_pred hhhcCEEEEecccCCCCcH
Q 021615 185 LRRTRLLVHVIDAAAENPV 203 (310)
Q Consensus 185 l~~~d~il~VvD~s~~~~~ 203 (310)
+..+|.++++++.......
T Consensus 56 ~~~~~~vi~v~~~~~~~~~ 74 (99)
T cd01983 56 LLAADLVIIVTTPEALAVL 74 (99)
T ss_pred hhhCCEEEEecCCchhhHH
Confidence 5578999999998764433
No 424
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.13 E-value=0.0052 Score=46.82 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=44.7
Q ss_pred EEEEc-CCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 105 VGLVG-LPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 105 V~lvG-~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
|+++| ..|+||||+...|...-... ......++.++. | .+.++|+|+.... ....
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~--------~~~vl~~d~d~~-----~--d~viiD~p~~~~~---------~~~~ 57 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR--------GKRVLLIDLDPQ-----Y--DYIIIDTPPSLGL---------LTRN 57 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC--------CCcEEEEeCCCC-----C--CEEEEeCcCCCCH---------HHHH
Confidence 56777 58999999987776432110 111222333322 2 6899999997533 2235
Q ss_pred HhhhcCEEEEecccCC
Q 021615 184 HLRRTRLLVHVIDAAA 199 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~ 199 (310)
.+..||.++++++.+.
T Consensus 58 ~l~~ad~viv~~~~~~ 73 (104)
T cd02042 58 ALAAADLVLIPVQPSP 73 (104)
T ss_pred HHHHCCEEEEeccCCH
Confidence 5668999999998864
No 425
>PRK10867 signal recognition particle protein; Provisional
Probab=97.08 E-value=0.0029 Score=60.97 Aligned_cols=95 Identities=16% Similarity=0.095 Sum_probs=45.8
Q ss_pred ceEEEeCCCCCccccCCchHHHHH--HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~--~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.++|+||||..... ..+-... +..+-..+-+++|+|+... .+... ..+.+... . ...-+|+||.|-.
T Consensus 185 DvVIIDTaGrl~~d---~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~-~a~~F~~~----~-~i~giIlTKlD~~ 253 (433)
T PRK10867 185 DVVIVDTAGRLHID---EELMDELKAIKAAVNPDEILLVVDAMTG--QDAVN-TAKAFNEA----L-GLTGVILTKLDGD 253 (433)
T ss_pred CEEEEeCCCCcccC---HHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHH-HHHHHHhh----C-CCCEEEEeCccCc
Confidence 68999999975421 1112111 1122356778999998642 22222 22222211 1 1245678999965
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSED 266 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~ 266 (310)
...-.... .....+++..-..+|+.+++
T Consensus 254 ~rgG~als---i~~~~~~PI~fig~Ge~v~D 281 (433)
T PRK10867 254 ARGGAALS---IRAVTGKPIKFIGTGEKLDD 281 (433)
T ss_pred ccccHHHH---HHHHHCcCEEEEeCCCcccc
Confidence 43222222 22333444433344554443
No 426
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.06 E-value=0.019 Score=47.89 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=42.9
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
.++|+|||+.... .....+..||.+++|++.+... ......+.+.+... ......+|+|++|...
T Consensus 64 d~viiD~p~~~~~---------~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~~~~~----~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER---------GFITAIAPADEALLVTTPEISS-LRDADRVKGLLEAL----GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH---------HHHHHHHhCCcEEEEeCCCcch-HHHHHHHHHHHHHc----CCceEEEEEeCCcccc
Confidence 6899999986432 2234456899999999887543 34444455555542 1234678999998764
No 427
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.05 E-value=0.00086 Score=54.33 Aligned_cols=40 Identities=30% Similarity=0.296 Sum_probs=28.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC--CCCCCCceeeccceEe
Q 021615 105 VGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRL 144 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~~~~~~--i~~~~~tT~~~~~~~v 144 (310)
|+|+|++|+|||||++.|....+. ....+.||..|..+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~ 43 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEV 43 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCcc
Confidence 689999999999999999986432 1334456666655443
No 428
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.00039 Score=58.72 Aligned_cols=43 Identities=33% Similarity=0.397 Sum_probs=34.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGD 147 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~ 147 (310)
-++|.|++|||||||+++|.... .. -....||+.|..|.+++.
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~ 49 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGV 49 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCc
Confidence 37899999999999999999887 44 445678888888887653
No 429
>PRK01889 GTPase RsgA; Reviewed
Probab=97.00 E-value=0.0037 Score=58.91 Aligned_cols=82 Identities=12% Similarity=0.017 Sum_probs=52.9
Q ss_pred hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcCCCccccCccCCH
Q 021615 186 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIGCDKVTSETELSS 264 (310)
Q Consensus 186 ~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g~~~~sa~~~~gi 264 (310)
.++|.+++|+++........++.++..+.. .+.+.++|+||+|+.+..+ ..+.+...-....+..+|++++.|+
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~-----~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWE-----SGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGL 185 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHH-----cCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccH
Confidence 578999999999643333344444444443 3677789999999986522 2222222201123344899999999
Q ss_pred HHHHHHHh
Q 021615 265 EDAVKSLS 272 (310)
Q Consensus 265 ~~l~~~l~ 272 (310)
+++...+.
T Consensus 186 ~~L~~~L~ 193 (356)
T PRK01889 186 DVLAAWLS 193 (356)
T ss_pred HHHHHHhh
Confidence 99998875
No 430
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.99 E-value=0.0049 Score=59.35 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=47.2
Q ss_pred ceEEEeCCCCCccccCCchHHHHH--HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~--~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.++|+||||..... ..+-... +...-..+.+++|+|+... .+... ....+... . ...-+|+||+|-.
T Consensus 184 DvVIIDTaGr~~~d---~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~-~a~~f~~~----v-~i~giIlTKlD~~ 252 (428)
T TIGR00959 184 DVVIVDTAGRLQID---EELMEELAAIKEILNPDEILLVVDAMTG--QDAVN-TAKTFNER----L-GLTGVVLTKLDGD 252 (428)
T ss_pred CEEEEeCCCccccC---HHHHHHHHHHHHhhCCceEEEEEeccch--HHHHH-HHHHHHhh----C-CCCEEEEeCccCc
Confidence 68999999975421 1111111 1223357889999998743 22222 22222211 1 2346779999965
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSED 266 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~ 266 (310)
...-....+ ....+++..-..+|+.+++
T Consensus 253 ~~~G~~lsi---~~~~~~PI~fi~~Ge~i~d 280 (428)
T TIGR00959 253 ARGGAALSV---RSVTGKPIKFIGVGEKIDD 280 (428)
T ss_pred ccccHHHHH---HHHHCcCEEEEeCCCChhh
Confidence 432222222 2333444433344444443
No 431
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.94 E-value=0.0069 Score=56.03 Aligned_cols=32 Identities=25% Similarity=0.157 Sum_probs=26.3
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI 129 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i 129 (310)
+-..+++|.+||+.++|||||...|++...+.
T Consensus 99 ~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~ 130 (415)
T KOG2749|consen 99 ESSYGPRVMVVGPTDVGKSTLCRILLNYAVKQ 130 (415)
T ss_pred hhccCCEEEEECCCccchHHHHHHHHHHHHHc
Confidence 33568999999999999999999998764433
No 432
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.92 E-value=0.00049 Score=55.18 Aligned_cols=30 Identities=37% Similarity=0.402 Sum_probs=25.4
Q ss_pred hhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 97 LILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.++..-.++|+|++|+|||||++.|++..
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEEccCCCccccceeeecccc
Confidence 345555679999999999999999999875
No 433
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.91 E-value=0.00082 Score=58.91 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=25.9
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.++..--|+|+|++|||||||+|.+.+-.
T Consensus 24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 33445555569999999999999999999875
No 434
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.00088 Score=59.15 Aligned_cols=29 Identities=31% Similarity=0.334 Sum_probs=23.8
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.....==|+++|++|+|||||+|.+.|-.
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33344459999999999999999999875
No 435
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.89 E-value=0.0015 Score=63.23 Aligned_cols=153 Identities=17% Similarity=0.232 Sum_probs=93.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.|++|||...+|||+|+.+.+........-|..........+.+. . ..+.+.|-.|..+. +|
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gq------s--~lLlirdeg~~~~a---------Qf- 92 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQ------S--HLLLIRDEGGHPDA---------QF- 92 (749)
T ss_pred hheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeecc------c--eEeeeecccCCchh---------hh-
Confidence 469999999999999999876443222111111111111111111 1 14566666663221 23
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc-------HhHHHHHHHHHHhcCCCc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA-------RDRLQSLTEEILKIGCDK 255 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~-------~~~~~~l~~~l~~~g~~~ 255 (310)
....|++|||+...+...++....+..++..|.. ..+.|+++++.+. .... +.....+......+...+
T Consensus 93 --t~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~-r~~i~l~lvgtqd-~iS~~~~rv~~da~~r~l~~~~krcsy~e 168 (749)
T KOG0705|consen 93 --CQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRN-ISDLPLILVGTQD-HISAKRPRVITDDRARQLSAQMKRCSYYE 168 (749)
T ss_pred --hhhccceEEEEEeccccCHHHHHHHHhhcccccc-cccchHHhhcCcc-hhhcccccccchHHHHHHHHhcCccceee
Confidence 3467999999999998999988888777765543 3457777777653 3221 122334444444556677
Q ss_pred cccCccCCHHHHHHHHhhccCC
Q 021615 256 VTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
..+.+|.+++..|+.++.....
T Consensus 169 t~atyGlnv~rvf~~~~~k~i~ 190 (749)
T KOG0705|consen 169 TCATYGLNVERVFQEVAQKIVQ 190 (749)
T ss_pred cchhhhhhHHHHHHHHHHHHHH
Confidence 8999999999999987765543
No 436
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.83 E-value=0.0013 Score=57.17 Aligned_cols=41 Identities=24% Similarity=0.197 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEe
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRL 144 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v 144 (310)
-|+|+|++|||||||++.|....... -..+.||..+..+..
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~ 56 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEI 56 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCC
Confidence 37899999999999999998654433 445566765554443
No 437
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.82 E-value=0.012 Score=53.75 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=63.6
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcc----------
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG---------- 170 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~---------- 170 (310)
+.+.++|||++|-|||++++++....+...+.. ... .++..+.+|.--+.
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~-~~~-------------------~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED-AER-------------------IPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC-Ccc-------------------ccEEEEecCCCCChHHHHHHHHHH
Confidence 457799999999999999999998875432210 000 14555666543210
Q ss_pred ------ccC-CchHHHHHHHHhhhcCEEEEecccCC---CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 021615 171 ------AHL-GKGLGRNFLRHLRRTRLLVHVIDAAA---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 231 (310)
Q Consensus 171 ------~~~-~~~l~~~~~~~l~~~d~il~VvD~s~---~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK 231 (310)
... ...+.......++.+.+=++|+|=-+ ..+...-+.+.+.|+... +....|+++|+++
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~-NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG-NELQIPIVGVGTR 189 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh-hccCCCeEEeccH
Confidence 000 01223334556778888899998432 112222334445555443 2347999998764
No 438
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0012 Score=57.16 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=27.4
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.....-.|+++|++|+|||||+++|-+-+
T Consensus 20 gi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 20 GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 345556666679999999999999999998876
No 439
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.77 E-value=0.0011 Score=58.23 Aligned_cols=34 Identities=32% Similarity=0.398 Sum_probs=29.4
Q ss_pred eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+++...-+|++||.+|||||||++.|.|.-
T Consensus 44 ~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 44 KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred cCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 4456677788899999999999999999999875
No 440
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.71 E-value=0.014 Score=55.47 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 021615 104 DVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~ 124 (310)
=||+||+--+|||||+.++..
T Consensus 19 YiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred EEEeecCcccCchhHHHHHHH
Confidence 489999999999999999975
No 441
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.71 E-value=0.0046 Score=57.90 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=50.0
Q ss_pred hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC
Q 021615 176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG 252 (310)
Q Consensus 176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g 252 (310)
.+...|.+.++.+|+||.|+|+.++......+ +.+.+.... .++..|+|+||+|+... +..+.+...|...+
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~-vE~~V~~~~---gnKkLILVLNK~DLVPr-Ev~e~Wl~YLr~~~ 206 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPE-VEEAVLQAH---GNKKLILVLNKIDLVPR-EVVEKWLVYLRREG 206 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChh-HHHHHHhcc---CCceEEEEeehhccCCH-HHHHHHHHHHHhhC
Confidence 34556777788999999999999876544322 212222111 34889999999999976 55777888887553
No 442
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.70 E-value=0.0016 Score=56.18 Aligned_cols=32 Identities=31% Similarity=0.290 Sum_probs=26.4
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455556679999999999999999999874
No 443
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.68 E-value=0.0017 Score=57.38 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=26.5
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 19 VDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455566679999999999999999999875
No 444
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.68 E-value=0.0017 Score=56.49 Aligned_cols=32 Identities=38% Similarity=0.349 Sum_probs=26.5
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 22 LNFHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455566679999999999999999999874
No 445
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.66 E-value=0.0017 Score=56.47 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=26.3
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 23 ~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 23 VSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 33455556679999999999999999999874
No 446
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.66 E-value=0.0019 Score=44.85 Aligned_cols=20 Identities=45% Similarity=0.484 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAIT 123 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~ 123 (310)
..+|.|++|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999886
No 447
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.65 E-value=0.0024 Score=55.01 Aligned_cols=42 Identities=33% Similarity=0.434 Sum_probs=30.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEe
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRL 144 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v 144 (310)
.-|+|+|++|+|||||++.|.+..+.. .....+|..|..+.+
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~ 48 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEV 48 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCc
Confidence 358999999999999999999875422 333456666655543
No 448
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.65 E-value=0.0015 Score=55.25 Aligned_cols=25 Identities=40% Similarity=0.428 Sum_probs=22.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.-.|+|+|++|+|||||+|.+.|-.
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhcc
Confidence 3459999999999999999999865
No 449
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.0016 Score=56.50 Aligned_cols=30 Identities=33% Similarity=0.414 Sum_probs=25.1
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+... .++|+|++|+|||||++.|.|..
T Consensus 20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 20 SLTLGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred eEEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 3445556 79999999999999999999864
No 450
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.63 E-value=0.011 Score=46.74 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.-+.++|++|+|||+|++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999763
No 451
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.002 Score=55.98 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=26.4
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 19 LSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455566679999999999999999999874
No 452
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.61 E-value=0.0019 Score=55.64 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=25.9
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455556679999999999999999999874
No 453
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.0016 Score=60.46 Aligned_cols=33 Identities=33% Similarity=0.323 Sum_probs=27.0
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.++..-=++++|++|||||||++.+.|-.
T Consensus 21 ~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 21 DVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555555569999999999999999999876
No 454
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.59 E-value=0.0019 Score=56.42 Aligned_cols=32 Identities=34% Similarity=0.356 Sum_probs=26.5
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 19 VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455566679999999999999999999875
No 455
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.59 E-value=0.0018 Score=56.03 Aligned_cols=30 Identities=33% Similarity=0.321 Sum_probs=25.0
Q ss_pred hhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 97 LILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+...-.++|+|++|+|||||++.|.|..
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344455569999999999999999999875
No 456
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.59 E-value=0.0043 Score=59.82 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=51.3
Q ss_pred CchHHHHHHHHhhhcCEEEEecccCCCCcHH--HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc
Q 021615 174 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVN--DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI 251 (310)
Q Consensus 174 ~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~--~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~ 251 (310)
+-.+-++.++.++++|+||.+||+.++..+. +++....+.. ..+..++++||+|+... ++...+.+.+..-
T Consensus 161 NLE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d------~~K~~~LLvNKaDLl~~-~qr~aWa~YF~~~ 233 (562)
T KOG1424|consen 161 NLEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD------PSKANVLLVNKADLLPP-EQRVAWAEYFRQN 233 (562)
T ss_pred CHHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccc------cccceEEEEehhhcCCH-HHHHHHHHHHHhc
Confidence 3466788899999999999999999865433 2222222222 24778899999999986 4456777777654
Q ss_pred CCC
Q 021615 252 GCD 254 (310)
Q Consensus 252 g~~ 254 (310)
.+.
T Consensus 234 ni~ 236 (562)
T KOG1424|consen 234 NIP 236 (562)
T ss_pred Cce
Confidence 433
No 457
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0022 Score=55.52 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=26.3
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455556679999999999999999999874
No 458
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.57 E-value=0.0024 Score=53.25 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=26.9
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.++..-.++|+|++|+|||||++.|.|..
T Consensus 19 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 19 VSLSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34456666679999999999999999999875
No 459
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.57 E-value=0.002 Score=55.89 Aligned_cols=32 Identities=34% Similarity=0.349 Sum_probs=26.5
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 18 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 18 VSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34455566679999999999999999999874
No 460
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.57 E-value=0.0023 Score=52.23 Aligned_cols=32 Identities=41% Similarity=0.513 Sum_probs=26.2
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++++|++|+|||||++.|.+..
T Consensus 19 ~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 19 ISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 33455555679999999999999999999875
No 461
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.0024 Score=53.94 Aligned_cols=32 Identities=34% Similarity=0.427 Sum_probs=26.6
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 19 i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 19 VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455566679999999999999999999874
No 462
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.56 E-value=0.0022 Score=54.63 Aligned_cols=29 Identities=31% Similarity=0.285 Sum_probs=24.3
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+...-.++|+|++|+|||||++.|.|..
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44445569999999999999999999874
No 463
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=96.56 E-value=0.015 Score=54.26 Aligned_cols=23 Identities=57% Similarity=0.761 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
++|++||.-.+|||||+-.|+..
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHg 156 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHG 156 (641)
T ss_pred EEEEEEecccCCcceeEeeeeec
Confidence 57999999999999999888754
No 464
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.56 E-value=0.0023 Score=55.46 Aligned_cols=31 Identities=39% Similarity=0.374 Sum_probs=25.7
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445555679999999999999999999874
No 465
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.55 E-value=0.0024 Score=54.95 Aligned_cols=33 Identities=30% Similarity=0.290 Sum_probs=27.2
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344455666679999999999999999999875
No 466
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.55 E-value=0.0022 Score=56.15 Aligned_cols=32 Identities=34% Similarity=0.431 Sum_probs=26.5
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 24 VSFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455566679999999999999999999875
No 467
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.55 E-value=0.0019 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|.|+|||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999875
No 468
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.54 E-value=0.0026 Score=54.26 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=25.7
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
...++....++++|++|+|||||+++|++.-
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3455566679999999999999999999764
No 469
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.53 E-value=0.0022 Score=55.91 Aligned_cols=31 Identities=32% Similarity=0.312 Sum_probs=25.7
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.++..-.++|+|++|+|||||++.|.|..
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555569999999999999999999975
No 470
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.53 E-value=0.0024 Score=55.75 Aligned_cols=31 Identities=32% Similarity=0.346 Sum_probs=25.9
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445556679999999999999999999875
No 471
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.52 E-value=0.0024 Score=55.76 Aligned_cols=32 Identities=38% Similarity=0.406 Sum_probs=26.3
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 23 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 23 ISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33455556679999999999999999999874
No 472
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.52 E-value=0.0016 Score=55.14 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=24.0
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHc
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~ 124 (310)
.+.+...-.++|+|++|+|||||++.+..
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 34555666799999999999999999874
No 473
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.51 E-value=0.0027 Score=53.80 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=23.8
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
++..-.++|+|++|+|||||++.|.+..
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3444569999999999999999999874
No 474
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.51 E-value=0.0025 Score=56.07 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=25.7
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445555679999999999999999999874
No 475
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.50 E-value=0.0049 Score=51.97 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=35.8
Q ss_pred CEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc
Q 021615 189 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI 251 (310)
Q Consensus 189 d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~ 251 (310)
|++++|+|+..+....+ ..+.+.+.. . ..++|+++|+||+|+.+. +....+.+.+...
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l-~--~~~kp~IlVlNK~DL~~~-~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQ-A--GGNKKLVLVLNKIDLVPK-ENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHh-c--cCCCCEEEEEehhhcCCH-HHHHHHHHHHHhh
Confidence 78999999987533322 223333211 0 136899999999999865 3355555555443
No 476
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.50 E-value=0.0024 Score=53.21 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+++|++|+|||||+++|...
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999964
No 477
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.50 E-value=0.0025 Score=55.24 Aligned_cols=30 Identities=33% Similarity=0.414 Sum_probs=25.2
Q ss_pred hhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 97 LILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+...-.++|+|++|+|||||++.|+|..
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555679999999999999999999875
No 478
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.50 E-value=0.0026 Score=55.15 Aligned_cols=32 Identities=31% Similarity=0.278 Sum_probs=26.2
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 19 LNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33445556679999999999999999999874
No 479
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.48 E-value=0.0026 Score=56.32 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=26.4
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34455556679999999999999999999875
No 480
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.48 E-value=0.0028 Score=55.89 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=26.1
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33445555679999999999999999999874
No 481
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.48 E-value=0.0027 Score=53.73 Aligned_cols=32 Identities=38% Similarity=0.468 Sum_probs=26.5
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.+..
T Consensus 18 ~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 18 LSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455566679999999999999999999874
No 482
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.48 E-value=0.0026 Score=57.06 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=26.8
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455566679999999999999999999875
No 483
>PRK10908 cell division protein FtsE; Provisional
Probab=96.48 E-value=0.0029 Score=55.30 Aligned_cols=32 Identities=34% Similarity=0.325 Sum_probs=26.8
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.+..
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455666679999999999999999999875
No 484
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.48 E-value=0.002 Score=55.72 Aligned_cols=29 Identities=38% Similarity=0.407 Sum_probs=24.0
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.++..--++|+|+.|+|||||+..|+|.-
T Consensus 23 ~~~pGev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 23 DLRPGEVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred eccCCcEEEEECCCCccHHHHHHHhhCcc
Confidence 34444458999999999999999999874
No 485
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.47 E-value=0.0028 Score=54.42 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=26.7
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|+|..
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44455566679999999999999999999975
No 486
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.46 E-value=0.0025 Score=54.60 Aligned_cols=32 Identities=28% Similarity=0.269 Sum_probs=26.4
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455556679999999999999999999975
No 487
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.0026 Score=55.97 Aligned_cols=31 Identities=32% Similarity=0.421 Sum_probs=26.0
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455556679999999999999999999875
No 488
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.0034 Score=57.12 Aligned_cols=40 Identities=35% Similarity=0.415 Sum_probs=32.2
Q ss_pred CCCCceeehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 87 GQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 87 g~~g~~~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+..+....+.+.++..--++++|++|||||||+..+.|-.
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC
Confidence 3334444566777788889999999999999999999876
No 489
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.44 E-value=0.002 Score=55.96 Aligned_cols=32 Identities=34% Similarity=0.313 Sum_probs=26.3
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33455556679999999999999999999874
No 490
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.43 E-value=0.0028 Score=53.76 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=25.4
Q ss_pred hhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 97 LILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.++..-.++++|++|+|||||++.|.+..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555679999999999999999999975
No 491
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.42 E-value=0.0031 Score=55.70 Aligned_cols=32 Identities=34% Similarity=0.409 Sum_probs=26.2
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|+|..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 20 VSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 33445555679999999999999999999875
No 492
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0021 Score=56.13 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=26.2
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33455555679999999999999999999874
No 493
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.42 E-value=0.0028 Score=55.92 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=25.7
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3445555679999999999999999999874
No 494
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0033 Score=52.85 Aligned_cols=32 Identities=31% Similarity=0.363 Sum_probs=26.5
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.+..
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455556679999999999999999999875
No 495
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.0028 Score=55.76 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=26.6
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+++..+-.++++|.+|+|||||.+.|.|-.
T Consensus 26 VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 26 VSLEIERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 33455556679999999999999999999976
No 496
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.40 E-value=0.0031 Score=54.45 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=26.8
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.+..
T Consensus 20 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 20 LSFTLNAGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred ceEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44455666679999999999999999999975
No 497
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.39 E-value=0.0032 Score=54.55 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=26.4
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33455556679999999999999999999975
No 498
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.39 E-value=0.0033 Score=55.14 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=25.8
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 30 ELVVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3444555679999999999999999999975
No 499
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.39 E-value=0.0029 Score=56.48 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=27.5
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.++..-.++|+|++|+|||||++.|+|..
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344556666679999999999999999999975
No 500
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.38 E-value=0.0035 Score=55.57 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=26.4
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|+|||||++.|.|..
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455556679999999999999999999875
Done!