Query 021615
Match_columns 310
No_of_seqs 313 out of 2988
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 06:44:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lnz_A SPO0B-associated GTP-bi 100.0 2.1E-43 7.1E-48 327.8 15.9 239 19-277 86-330 (342)
2 1udx_A The GTP-binding protein 100.0 3.1E-37 1E-41 292.7 17.2 237 19-277 85-325 (416)
3 4a9a_A Ribosome-interacting GT 99.9 5.1E-24 1.7E-28 199.2 9.3 126 100-235 70-195 (376)
4 3iev_A GTP-binding protein ERA 99.9 1.8E-22 6E-27 184.8 16.4 163 104-279 12-184 (308)
5 3tkl_A RAS-related protein RAB 99.9 2.1E-22 7.2E-27 170.5 10.9 162 100-276 14-178 (196)
6 2dyk_A GTP-binding protein; GT 99.9 2.9E-22 1E-26 164.0 11.3 157 103-274 2-159 (161)
7 2wji_A Ferrous iron transport 99.9 1.2E-21 4.1E-26 162.4 12.7 155 103-275 4-163 (165)
8 1wf3_A GTP-binding protein; GT 99.9 1.3E-21 4.3E-26 178.6 13.8 163 103-277 8-173 (301)
9 1g16_A RAS-related protein SEC 99.9 1.2E-21 4E-26 161.7 12.1 159 102-275 3-163 (170)
10 2gj8_A MNME, tRNA modification 99.9 1.9E-22 6.6E-27 168.6 6.0 159 102-275 4-164 (172)
11 3clv_A RAB5 protein, putative; 99.9 4.2E-21 1.4E-25 162.7 14.3 164 101-275 6-202 (208)
12 1c1y_A RAS-related protein RAP 99.9 3.8E-21 1.3E-25 158.1 13.4 158 103-275 4-165 (167)
13 3tw8_B RAS-related protein RAB 99.9 1.8E-21 6E-26 162.2 11.4 160 100-275 7-169 (181)
14 3q72_A GTP-binding protein RAD 99.9 1.1E-21 3.6E-26 161.6 9.9 157 102-275 2-162 (166)
15 1xzp_A Probable tRNA modificat 99.9 6.9E-22 2.4E-26 190.8 10.1 158 101-275 242-403 (482)
16 2efe_B Small GTP-binding prote 99.9 5.6E-21 1.9E-25 159.5 14.3 161 102-277 12-175 (181)
17 4dkx_A RAS-related protein RAB 99.9 1.3E-21 4.5E-26 170.1 10.8 157 103-277 14-176 (216)
18 4dsu_A GTPase KRAS, isoform 2B 99.9 6.1E-21 2.1E-25 160.2 14.4 160 102-276 4-165 (189)
19 1z0j_A RAB-22, RAS-related pro 99.9 1.8E-21 6.3E-26 160.5 10.9 157 102-275 6-167 (170)
20 3cph_A RAS-related protein SEC 99.9 2.9E-21 1E-25 165.7 12.6 162 99-275 17-180 (213)
21 1ek0_A Protein (GTP-binding pr 99.9 2.4E-21 8.3E-26 159.6 11.5 158 103-275 4-167 (170)
22 2fg5_A RAB-22B, RAS-related pr 99.9 3.3E-21 1.1E-25 163.5 12.6 160 100-276 21-185 (192)
23 2q3h_A RAS homolog gene family 99.9 7.6E-22 2.6E-26 168.2 8.3 161 98-275 16-193 (201)
24 3iby_A Ferrous iron transport 99.9 4.6E-22 1.6E-26 177.4 7.2 154 103-274 2-164 (256)
25 2il1_A RAB12; G-protein, GDP, 99.9 1.4E-21 4.7E-26 166.0 9.7 160 101-275 25-188 (192)
26 1x3s_A RAS-related protein RAB 99.9 6.1E-21 2.1E-25 161.2 13.6 162 102-277 15-178 (195)
27 1r2q_A RAS-related protein RAB 99.9 5.3E-21 1.8E-25 157.5 12.6 157 102-275 6-167 (170)
28 1z0f_A RAB14, member RAS oncog 99.9 6.6E-21 2.3E-25 158.4 13.3 160 101-275 14-176 (179)
29 4dhe_A Probable GTP-binding pr 99.9 5E-21 1.7E-25 165.8 13.0 163 101-276 28-210 (223)
30 2nzj_A GTP-binding protein REM 99.8 3.6E-21 1.2E-25 159.6 11.4 160 102-275 4-167 (175)
31 3b1v_A Ferrous iron uptake tra 99.8 4.8E-21 1.6E-25 172.3 12.9 156 102-276 3-163 (272)
32 2qu8_A Putative nucleolar GTP- 99.8 2.5E-21 8.5E-26 169.0 10.7 164 102-276 29-204 (228)
33 3q85_A GTP-binding protein REM 99.8 2.1E-21 7.2E-26 160.3 9.6 161 102-275 2-165 (169)
34 2g6b_A RAS-related protein RAB 99.8 3.5E-21 1.2E-25 160.6 11.1 159 101-275 9-172 (180)
35 1wms_A RAB-9, RAB9, RAS-relate 99.8 6.3E-21 2.1E-25 158.6 12.3 161 102-275 7-172 (177)
36 1ky3_A GTP-binding protein YPT 99.8 4.2E-21 1.4E-25 160.0 11.3 163 101-275 7-176 (182)
37 2hup_A RAS-related protein RAB 99.8 6.5E-21 2.2E-25 163.2 12.4 163 98-275 25-191 (201)
38 3gee_A MNME, tRNA modification 99.8 2.8E-21 9.7E-26 186.4 11.2 165 99-276 230-397 (476)
39 2lkc_A Translation initiation 99.8 5.2E-21 1.8E-25 159.3 11.4 152 101-275 7-169 (178)
40 2bme_A RAB4A, RAS-related prot 99.8 6.7E-21 2.3E-25 159.9 12.1 160 101-275 9-171 (186)
41 2bcg_Y Protein YP2, GTP-bindin 99.8 8.3E-21 2.8E-25 162.5 12.8 161 101-276 7-170 (206)
42 1m2o_B GTP-binding protein SAR 99.8 6.8E-21 2.3E-25 161.6 12.0 153 102-274 23-189 (190)
43 1mky_A Probable GTP-binding pr 99.8 6E-21 2.1E-25 182.8 13.0 157 103-275 2-164 (439)
44 2erx_A GTP-binding protein DI- 99.8 7.5E-21 2.6E-25 156.9 11.9 160 103-276 4-166 (172)
45 2qtf_A Protein HFLX, GTP-bindi 99.8 7.3E-21 2.5E-25 177.8 13.1 162 102-275 179-352 (364)
46 2hxs_A RAB-26, RAS-related pro 99.8 1.2E-21 4E-26 163.3 6.8 164 102-277 6-173 (178)
47 2y8e_A RAB-protein 6, GH09086P 99.8 5.1E-21 1.8E-25 159.1 10.7 158 103-275 15-175 (179)
48 1vg8_A RAS-related protein RAB 99.8 1E-20 3.4E-25 161.7 12.8 163 101-276 7-174 (207)
49 2ew1_A RAS-related protein RAB 99.8 4.1E-21 1.4E-25 164.8 10.2 161 100-275 24-187 (201)
50 2iwr_A Centaurin gamma 1; ANK 99.8 6.9E-21 2.4E-25 158.9 11.2 153 103-275 8-167 (178)
51 2a5j_A RAS-related protein RAB 99.8 6.2E-21 2.1E-25 161.5 11.0 160 101-275 20-182 (191)
52 2gf9_A RAS-related protein RAB 99.8 9E-21 3.1E-25 160.1 11.9 161 100-275 20-183 (189)
53 2h57_A ADP-ribosylation factor 99.8 7.1E-21 2.4E-25 160.9 11.3 159 101-276 20-186 (190)
54 1u8z_A RAS-related protein RAL 99.8 1.5E-20 5.1E-25 154.3 13.0 158 103-275 5-165 (168)
55 1z08_A RAS-related protein RAB 99.8 3.5E-21 1.2E-25 159.0 9.2 159 102-275 6-167 (170)
56 1r8s_A ADP-ribosylation factor 99.8 2.8E-20 9.5E-25 152.8 14.5 153 103-275 1-160 (164)
57 1f6b_A SAR1; gtpases, N-termin 99.8 6.5E-21 2.2E-25 162.9 11.1 153 102-274 25-196 (198)
58 2oil_A CATX-8, RAS-related pro 99.8 4.8E-21 1.6E-25 162.2 10.1 162 99-275 22-186 (193)
59 1zbd_A Rabphilin-3A; G protein 99.8 1.2E-20 4.1E-25 161.0 12.5 160 101-275 7-169 (203)
60 1z06_A RAS-related protein RAB 99.8 1.1E-20 3.9E-25 159.5 12.3 162 101-275 19-186 (189)
61 1zj6_A ADP-ribosylation factor 99.8 9.1E-21 3.1E-25 159.8 11.6 158 100-277 14-178 (187)
62 2bov_A RAla, RAS-related prote 99.8 1.3E-20 4.3E-25 160.8 12.6 161 101-276 13-176 (206)
63 4bas_A ADP-ribosylation factor 99.8 8.1E-21 2.8E-25 161.1 11.2 159 101-276 16-188 (199)
64 1upt_A ARL1, ADP-ribosylation 99.8 1.1E-20 3.9E-25 156.0 11.5 156 100-275 5-167 (171)
65 1z2a_A RAS-related protein RAB 99.8 5.3E-21 1.8E-25 157.4 9.5 158 102-275 5-165 (168)
66 2fn4_A P23, RAS-related protei 99.8 6.1E-21 2.1E-25 158.9 9.9 159 102-275 9-170 (181)
67 1fzq_A ADP-ribosylation factor 99.8 1.6E-20 5.4E-25 158.0 12.5 151 102-276 16-177 (181)
68 2fu5_C RAS-related protein RAB 99.8 1.8E-21 6E-26 163.2 6.3 160 101-275 7-169 (183)
69 2atx_A Small GTP binding prote 99.8 1.9E-20 6.6E-25 158.6 12.9 157 102-275 18-191 (194)
70 3i8s_A Ferrous iron transport 99.8 2.1E-21 7.3E-26 174.7 7.1 157 103-276 4-168 (274)
71 3bc1_A RAS-related protein RAB 99.8 2.5E-20 8.5E-25 156.9 13.2 167 101-275 10-183 (195)
72 1zd9_A ADP-ribosylation factor 99.8 2.2E-20 7.5E-25 157.9 12.8 159 99-276 19-184 (188)
73 3cbq_A GTP-binding protein REM 99.8 8E-21 2.7E-25 162.0 10.1 162 101-275 22-186 (195)
74 2ce2_X GTPase HRAS; signaling 99.8 4E-20 1.4E-24 151.2 13.8 158 103-275 4-163 (166)
75 3t5g_A GTP-binding protein RHE 99.8 2.1E-20 7.1E-25 156.4 12.3 161 102-277 6-169 (181)
76 2a9k_A RAS-related protein RAL 99.8 2.9E-20 1E-24 155.6 13.1 159 102-275 18-179 (187)
77 3ihw_A Centg3; RAS, centaurin, 99.8 1.8E-20 6.1E-25 158.3 11.7 153 102-275 20-178 (184)
78 2p5s_A RAS and EF-hand domain 99.8 2.1E-20 7.3E-25 159.4 12.3 159 100-275 26-195 (199)
79 2gf0_A GTP-binding protein DI- 99.8 2.6E-20 8.8E-25 158.0 12.7 161 102-277 8-171 (199)
80 3reg_A RHO-like small GTPase; 99.8 1.1E-20 3.8E-25 160.2 10.4 160 100-276 21-187 (194)
81 3pqc_A Probable GTP-binding pr 99.8 6.6E-20 2.3E-24 154.6 15.1 158 101-275 22-192 (195)
82 2j0v_A RAC-like GTP-binding pr 99.8 9E-21 3.1E-25 163.0 9.9 159 102-277 9-180 (212)
83 4djt_A GTP-binding nuclear pro 99.8 2.5E-21 8.7E-26 167.2 6.4 163 101-279 10-177 (218)
84 3dz8_A RAS-related protein RAB 99.8 2.6E-21 8.9E-26 163.9 6.3 159 100-275 21-184 (191)
85 2h17_A ADP-ribosylation factor 99.8 9.8E-21 3.4E-25 158.9 9.8 154 101-274 20-180 (181)
86 3bwd_D RAC-like GTP-binding pr 99.8 6.4E-21 2.2E-25 159.3 8.6 158 101-275 7-179 (182)
87 1kao_A RAP2A; GTP-binding prot 99.8 1.9E-20 6.5E-25 153.5 11.2 158 103-275 4-164 (167)
88 3kkq_A RAS-related protein M-R 99.8 4.5E-20 1.5E-24 154.6 13.5 158 102-275 18-180 (183)
89 1wxq_A GTP-binding protein; st 99.8 1.2E-21 4.1E-26 185.0 4.2 166 103-269 1-262 (397)
90 1ksh_A ARF-like protein 2; sma 99.8 1E-20 3.5E-25 159.1 9.4 156 100-275 16-178 (186)
91 3con_A GTPase NRAS; structural 99.8 4.1E-20 1.4E-24 155.9 13.0 159 102-275 21-181 (190)
92 3oes_A GTPase rhebl1; small GT 99.8 1.2E-20 4E-25 161.2 9.6 165 98-277 20-187 (201)
93 3a1s_A Iron(II) transport prot 99.8 8.5E-21 2.9E-25 169.4 9.0 156 102-275 5-165 (258)
94 1svi_A GTP-binding protein YSX 99.8 6.1E-20 2.1E-24 155.3 13.7 157 101-274 22-192 (195)
95 2o52_A RAS-related protein RAB 99.8 7.4E-21 2.5E-25 162.6 8.0 161 100-275 23-186 (200)
96 3cpj_B GTP-binding protein YPT 99.8 1.6E-20 5.6E-25 163.1 10.0 163 100-277 11-176 (223)
97 3t1o_A Gliding protein MGLA; G 99.8 1.2E-19 3.9E-24 153.3 14.9 165 101-275 13-190 (198)
98 2hjg_A GTP-binding protein ENG 99.8 7.2E-21 2.5E-25 182.1 8.1 157 102-276 3-164 (436)
99 2f7s_A C25KG, RAS-related prot 99.8 8.2E-21 2.8E-25 163.9 7.6 168 100-275 23-197 (217)
100 2hjg_A GTP-binding protein ENG 99.8 9E-21 3.1E-25 181.4 8.3 162 101-276 174-348 (436)
101 2atv_A RERG, RAS-like estrogen 99.8 3.8E-20 1.3E-24 157.2 10.9 158 101-275 27-189 (196)
102 2wjg_A FEOB, ferrous iron tran 99.8 1.8E-20 6.1E-25 157.7 8.7 157 103-277 8-169 (188)
103 2b6h_A ADP-ribosylation factor 99.8 3E-20 1E-24 157.9 10.1 155 101-275 28-189 (192)
104 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.6E-20 5.4E-25 157.2 8.3 159 102-277 5-180 (186)
105 4gzl_A RAS-related C3 botulinu 99.8 2.6E-20 8.9E-25 159.8 9.6 157 101-274 29-202 (204)
106 4dcu_A GTP-binding protein ENG 99.8 3.7E-20 1.2E-24 178.2 11.3 162 101-276 194-368 (456)
107 2j1l_A RHO-related GTP-binding 99.8 2.4E-20 8.1E-25 161.2 8.7 157 102-275 34-207 (214)
108 2gco_A H9, RHO-related GTP-bin 99.8 3.4E-20 1.1E-24 158.5 9.2 157 102-275 25-198 (201)
109 3q3j_B RHO-related GTP-binding 99.8 3.4E-20 1.2E-24 160.4 9.3 160 101-277 26-203 (214)
110 3l0i_B RAS-related protein RAB 99.8 1.1E-21 3.7E-26 167.4 -0.1 161 100-276 31-195 (199)
111 2e87_A Hypothetical protein PH 99.8 4.9E-19 1.7E-23 165.1 17.7 163 101-275 166-334 (357)
112 1m7b_A RND3/RHOE small GTP-bin 99.8 3.2E-20 1.1E-24 156.2 8.8 157 102-275 7-181 (184)
113 1moz_A ARL1, ADP-ribosylation 99.8 1.6E-20 5.6E-25 157.1 6.7 155 101-275 17-178 (183)
114 2fh5_B SR-beta, signal recogni 99.8 2.3E-19 7.9E-24 154.4 13.9 159 101-274 6-213 (214)
115 3r7w_A Gtpase1, GTP-binding pr 99.8 9.1E-20 3.1E-24 166.7 12.0 164 102-275 3-179 (307)
116 2fv8_A H6, RHO-related GTP-bin 99.8 3.9E-20 1.3E-24 158.8 8.7 158 102-276 25-199 (207)
117 1gwn_A RHO-related GTP-binding 99.8 3.9E-20 1.3E-24 159.1 8.6 158 101-275 27-202 (205)
118 2cxx_A Probable GTP-binding pr 99.8 2.8E-19 9.5E-24 150.3 13.2 154 102-275 1-182 (190)
119 2x77_A ADP-ribosylation factor 99.8 9.7E-20 3.3E-24 153.6 10.2 155 101-275 21-182 (189)
120 3c5c_A RAS-like protein 12; GD 99.8 7.4E-20 2.5E-24 154.7 9.3 158 102-275 21-184 (187)
121 1jal_A YCHF protein; nucleotid 99.8 1.6E-19 5.4E-24 167.9 11.8 111 103-213 3-132 (363)
122 1ega_A Protein (GTP-binding pr 99.8 9.6E-20 3.3E-24 166.1 10.1 157 103-277 9-175 (301)
123 2yc2_C IFT27, small RAB-relate 99.8 6E-20 2.1E-24 156.6 7.8 164 101-275 19-190 (208)
124 3llu_A RAS-related GTP-binding 99.8 3.3E-19 1.1E-23 151.7 12.1 162 100-275 18-195 (196)
125 2dby_A GTP-binding protein; GD 99.8 7.3E-20 2.5E-24 171.0 8.7 111 103-213 2-135 (368)
126 2g3y_A GTP-binding protein GEM 99.8 1.7E-19 5.8E-24 156.2 10.3 161 101-275 36-201 (211)
127 3lvq_E ARF-GAP with SH3 domain 99.8 2.3E-19 7.9E-24 174.2 12.2 157 100-276 320-483 (497)
128 1mky_A Probable GTP-binding pr 99.8 2.8E-19 9.7E-24 171.2 12.4 160 102-275 180-353 (439)
129 3gj0_A GTP-binding nuclear pro 99.8 2.2E-20 7.6E-25 161.8 4.3 156 102-276 15-174 (221)
130 3geh_A MNME, tRNA modification 99.8 2.3E-20 7.9E-25 179.4 4.7 163 98-277 220-384 (462)
131 3lxx_A GTPase IMAP family memb 99.8 1.4E-19 4.7E-24 159.2 9.1 166 100-275 27-212 (239)
132 3k53_A Ferrous iron transport 99.8 2.1E-19 7.1E-24 161.2 9.6 157 102-275 3-164 (271)
133 3lxw_A GTPase IMAP family memb 99.8 4.7E-19 1.6E-23 157.0 11.3 164 102-275 21-206 (247)
134 3qq5_A Small GTP-binding prote 99.8 1.2E-19 4.3E-24 172.3 8.1 158 101-275 33-194 (423)
135 3o47_A ADP-ribosylation factor 99.8 2.4E-19 8E-24 165.5 9.6 155 101-275 164-325 (329)
136 3th5_A RAS-related C3 botulinu 99.7 1.3E-20 4.3E-25 161.3 0.0 158 100-274 28-202 (204)
137 2xtp_A GTPase IMAP family memb 99.8 8.5E-19 2.9E-23 156.0 11.6 165 101-275 21-206 (260)
138 2cjw_A GTP-binding protein GEM 99.8 4.5E-19 1.5E-23 150.7 9.4 161 102-275 6-170 (192)
139 4dcu_A GTP-binding protein ENG 99.8 3.8E-19 1.3E-23 171.1 9.0 156 102-275 23-183 (456)
140 2zej_A Dardarin, leucine-rich 99.8 1.8E-18 6.1E-23 145.6 9.9 160 103-275 3-176 (184)
141 3t5d_A Septin-7; GTP-binding p 99.8 9.5E-18 3.2E-22 150.7 14.5 163 103-275 9-202 (274)
142 2wkq_A NPH1-1, RAS-related C3 99.8 1.2E-18 4.1E-23 159.5 8.5 161 98-275 151-328 (332)
143 3dpu_A RAB family protein; roc 99.8 1.1E-18 3.7E-23 171.1 8.6 161 101-278 40-209 (535)
144 2f9l_A RAB11B, member RAS onco 99.7 7.3E-18 2.5E-22 143.7 10.1 159 102-275 5-166 (199)
145 3sjy_A Translation initiation 99.7 3.1E-17 1.1E-21 155.3 14.9 164 101-275 7-190 (403)
146 2aka_B Dynamin-1; fusion prote 99.7 5.9E-18 2E-22 153.1 9.3 168 101-273 25-249 (299)
147 1oix_A RAS-related protein RAB 99.7 8.2E-18 2.8E-22 142.7 9.0 160 100-274 27-189 (191)
148 3izy_P Translation initiation 99.7 1.4E-18 4.9E-23 169.2 3.3 155 101-275 3-166 (537)
149 3j2k_7 ERF3, eukaryotic polype 99.7 8E-17 2.7E-21 154.1 14.7 149 100-269 15-217 (439)
150 1wb1_A Translation elongation 99.7 6.7E-17 2.3E-21 156.3 14.1 152 102-274 19-186 (482)
151 3def_A T7I23.11 protein; chlor 99.7 4E-17 1.4E-21 145.6 11.5 128 101-236 35-165 (262)
152 1h65_A Chloroplast outer envel 99.7 6.6E-17 2.3E-21 144.8 12.6 128 102-237 39-169 (270)
153 3r7w_B Gtpase2, GTP-binding pr 99.7 5.3E-17 1.8E-21 148.6 11.9 155 104-276 1-173 (331)
154 1jwy_B Dynamin A GTPase domain 99.7 5.2E-17 1.8E-21 148.1 11.9 112 158-274 132-259 (315)
155 2ywe_A GTP-binding protein LEP 99.7 1.6E-16 5.3E-21 156.8 14.7 159 100-276 4-183 (600)
156 3tr5_A RF-3, peptide chain rel 99.7 4.6E-17 1.6E-21 158.9 10.7 119 98-237 9-149 (528)
157 1nrj_B SR-beta, signal recogni 99.7 1.7E-16 5.7E-21 136.8 12.5 121 101-237 11-135 (218)
158 3c5h_A Glucocorticoid receptor 99.7 4.4E-17 1.5E-21 144.9 7.9 86 187-274 162-252 (255)
159 3cb4_D GTP-binding protein LEP 99.7 1.8E-16 6.2E-21 156.5 12.9 159 101-276 3-181 (599)
160 1kk1_A EIF2gamma; initiation o 99.7 1.7E-16 5.9E-21 150.5 12.2 163 101-275 9-198 (410)
161 2ged_A SR-beta, signal recogni 99.7 2.6E-16 8.8E-21 132.8 12.0 123 100-237 46-171 (193)
162 2j69_A Bacterial dynamin-like 99.7 1.6E-16 5.5E-21 160.0 11.9 167 99-275 66-323 (695)
163 1s0u_A EIF-2-gamma, translatio 99.7 4.7E-16 1.6E-20 147.4 13.7 163 101-275 7-196 (408)
164 3izq_1 HBS1P, elongation facto 99.7 2.2E-16 7.4E-21 156.7 11.6 147 100-267 165-362 (611)
165 2ohf_A Protein OLA1, GTP-bindi 99.7 9.2E-17 3.2E-21 150.7 8.4 118 98-215 18-154 (396)
166 3p26_A Elongation factor 1 alp 99.7 5.4E-16 1.9E-20 150.1 13.4 148 100-266 31-227 (483)
167 1zo1_I IF2, translation initia 99.7 1.6E-17 5.6E-22 160.5 2.2 151 101-274 3-164 (501)
168 2c78_A Elongation factor TU-A; 99.6 3.3E-16 1.1E-20 148.3 10.5 142 101-263 10-180 (405)
169 2elf_A Protein translation elo 99.6 7.9E-16 2.7E-20 144.0 12.9 141 104-275 23-178 (370)
170 1zun_B Sulfate adenylate trans 99.6 9.7E-16 3.3E-20 146.4 13.7 149 100-269 22-216 (434)
171 1d2e_A Elongation factor TU (E 99.6 1.1E-15 3.9E-20 144.3 12.0 153 102-275 3-193 (397)
172 3t34_A Dynamin-related protein 99.6 4.5E-16 1.5E-20 145.1 8.6 167 98-268 30-252 (360)
173 1pui_A ENGB, probable GTP-bind 99.6 3.7E-15 1.3E-19 127.4 13.3 161 98-275 22-197 (210)
174 1g7s_A Translation initiation 99.6 2.5E-15 8.6E-20 148.4 13.4 160 102-274 5-215 (594)
175 3mca_A HBS1, elongation factor 99.6 4.1E-17 1.4E-21 161.4 -0.2 145 100-265 175-371 (592)
176 2x2e_A Dynamin-1; nitration, h 99.6 5.8E-16 2E-20 144.0 6.5 168 101-273 30-254 (353)
177 2h5e_A Peptide chain release f 99.6 1.8E-15 6.1E-20 147.7 9.7 153 98-271 9-189 (529)
178 1jny_A EF-1-alpha, elongation 99.6 2.5E-15 8.7E-20 143.5 10.6 147 101-268 5-204 (435)
179 1f60_A Elongation factor EEF1A 99.6 2.1E-15 7.1E-20 145.0 9.9 145 102-267 7-202 (458)
180 2qpt_A EH domain-containing pr 99.6 9.9E-15 3.4E-19 143.2 12.8 133 100-239 63-235 (550)
181 1r5b_A Eukaryotic peptide chai 99.6 1.5E-15 5.2E-20 146.3 6.4 148 100-268 41-243 (467)
182 2qag_A Septin-2, protein NEDD5 99.6 4.5E-15 1.5E-19 138.5 9.1 160 102-273 37-229 (361)
183 3avx_A Elongation factor TS, e 99.6 2.8E-14 9.6E-19 147.9 14.9 155 100-275 294-484 (1289)
184 1dar_A EF-G, elongation factor 99.6 3.8E-14 1.3E-18 142.6 15.0 117 100-237 10-144 (691)
185 3zvr_A Dynamin-1; hydrolase, D 99.5 7.4E-15 2.5E-19 147.8 9.1 169 100-273 49-274 (772)
186 1ni3_A YCHF GTPase, YCHF GTP-b 99.5 2.3E-14 7.7E-19 134.7 10.3 100 100-199 18-127 (392)
187 2xex_A Elongation factor G; GT 99.5 3.7E-14 1.3E-18 142.7 11.9 116 101-237 9-142 (693)
188 3vqt_A RF-3, peptide chain rel 99.5 1.9E-13 6.6E-18 133.9 14.7 122 95-237 24-167 (548)
189 2www_A Methylmalonic aciduria 99.5 2.4E-14 8.1E-19 133.0 7.9 98 158-275 168-277 (349)
190 2dy1_A Elongation factor G; tr 99.5 2.4E-13 8.1E-18 136.3 14.6 116 99-235 6-139 (665)
191 3p32_A Probable GTPase RV1496/ 99.5 1.1E-13 3.7E-18 128.8 10.5 98 158-275 173-282 (355)
192 2rdo_7 EF-G, elongation factor 99.5 3.8E-13 1.3E-17 135.5 14.4 123 100-237 8-149 (704)
193 1n0u_A EF-2, elongation factor 99.4 1.2E-13 4.1E-18 141.7 8.4 121 100-235 17-163 (842)
194 3j25_A Tetracycline resistance 99.4 4E-13 1.4E-17 134.0 11.4 115 102-237 2-134 (638)
195 2p67_A LAO/AO transport system 99.4 1.5E-13 5.3E-18 127.1 6.5 98 158-275 150-259 (341)
196 2qag_C Septin-7; cell cycle, c 99.4 3.6E-12 1.2E-16 120.7 13.4 162 103-273 32-223 (418)
197 2qnr_A Septin-2, protein NEDD5 99.4 1.8E-12 6.3E-17 117.8 10.7 160 102-275 18-212 (301)
198 1yrb_A ATP(GTP)binding protein 99.4 1.8E-12 6.1E-17 114.7 10.4 110 158-275 110-255 (262)
199 3ec1_A YQEH GTPase; atnos1, at 99.4 4.6E-14 1.6E-18 132.0 -0.8 120 101-237 161-289 (369)
200 2wsm_A Hydrogenase expression/ 99.3 8.9E-13 3E-17 113.6 5.8 157 100-276 28-213 (221)
201 2qm8_A GTPase/ATPase; G protei 99.3 4.3E-12 1.5E-16 117.2 9.3 98 158-275 149-259 (337)
202 3h2y_A GTPase family protein; 99.3 2.9E-13 1E-17 126.5 1.2 122 101-239 159-290 (368)
203 4fn5_A EF-G 1, elongation fact 99.3 2.3E-11 8E-16 122.7 13.9 135 99-248 10-165 (709)
204 3sop_A Neuronal-specific septi 99.1 8.3E-10 2.8E-14 98.7 13.4 140 103-254 3-175 (270)
205 4fid_A G protein alpha subunit 99.1 1.3E-10 4.6E-15 106.9 8.3 71 158-236 162-242 (340)
206 2hf9_A Probable hydrogenase ni 99.0 2.6E-10 8.9E-15 98.3 5.8 155 100-275 36-222 (226)
207 3ohm_A Guanine nucleotide-bind 99.0 6E-10 2.1E-14 102.1 6.1 110 158-275 168-316 (327)
208 1puj_A YLQF, conserved hypothe 98.9 1.7E-09 5.8E-14 97.3 7.4 61 101-172 119-180 (282)
209 2qag_B Septin-6, protein NEDD5 98.9 8.6E-09 2.9E-13 97.5 11.6 141 95-249 33-202 (427)
210 1u0l_A Probable GTPase ENGC; p 98.8 5.9E-09 2E-13 94.5 8.7 102 158-273 64-169 (301)
211 1cip_A Protein (guanine nucleo 98.8 7.6E-10 2.6E-14 102.6 1.8 110 158-275 194-342 (353)
212 1f5n_A Interferon-induced guan 98.8 8E-09 2.7E-13 101.5 8.8 67 102-171 38-105 (592)
213 2j37_W Signal recognition part 98.8 8.7E-09 3E-13 99.6 8.4 161 102-274 101-310 (504)
214 1tq4_A IIGP1, interferon-induc 98.7 8.2E-08 2.8E-12 90.6 13.0 155 104-279 71-255 (413)
215 1zcb_A G alpha I/13; GTP-bindi 98.7 1.9E-09 6.4E-14 100.3 1.6 110 158-275 202-351 (362)
216 3cnl_A YLQF, putative uncharac 98.7 6.6E-09 2.2E-13 92.4 5.0 58 103-171 100-158 (262)
217 1azs_C GS-alpha; complex (lyas 98.6 1.4E-08 4.8E-13 95.4 4.2 70 158-235 218-297 (402)
218 2xtz_A Guanine nucleotide-bind 98.6 1.1E-08 3.9E-13 94.7 2.7 110 158-275 184-343 (354)
219 3szr_A Interferon-induced GTP- 98.5 2.1E-07 7.2E-12 92.2 9.4 76 157-237 147-229 (608)
220 3l82_B F-box only protein 4; T 98.4 2.4E-07 8.1E-12 79.1 6.3 116 158-276 97-222 (227)
221 2yv5_A YJEQ protein; hydrolase 98.4 5.8E-07 2E-11 81.4 8.9 85 184-273 76-165 (302)
222 3dm5_A SRP54, signal recogniti 98.4 1.4E-06 4.7E-11 82.8 11.6 95 158-266 184-280 (443)
223 2v3c_C SRP54, signal recogniti 98.4 3.7E-07 1.3E-11 86.7 6.9 68 158-237 182-253 (432)
224 1puj_A YLQF, conserved hypothe 98.4 1.1E-06 3.8E-11 78.7 8.9 98 161-273 3-102 (282)
225 3q5d_A Atlastin-1; G protein, 98.1 5E-06 1.7E-10 79.1 8.5 69 102-170 67-153 (447)
226 3l2o_B F-box only protein 4; s 98.1 2.3E-06 7.9E-11 76.5 5.3 100 175-276 198-307 (312)
227 3kl4_A SRP54, signal recogniti 98.1 1.3E-06 4.5E-11 82.8 3.9 95 158-264 181-277 (433)
228 3cnl_A YLQF, putative uncharac 98.0 4.5E-06 1.5E-10 74.0 5.2 94 164-274 4-98 (262)
229 3ec1_A YQEH GTPase; atnos1, at 98.0 6.1E-06 2.1E-10 76.8 6.1 86 180-273 63-158 (369)
230 3h2y_A GTPase family protein; 98.0 7E-06 2.4E-10 76.4 6.1 86 180-273 61-156 (368)
231 1j8m_F SRP54, signal recogniti 98.0 3E-05 1E-09 69.9 10.0 96 158-266 182-280 (297)
232 1t9h_A YLOQ, probable GTPase E 97.7 1.5E-05 5.2E-10 72.2 3.5 28 99-126 170-197 (307)
233 3e70_C DPA, signal recognition 97.7 3.3E-05 1.1E-09 70.6 5.7 95 158-266 213-309 (328)
234 2yhs_A FTSY, cell division pro 97.6 0.00013 4.4E-09 70.0 8.2 156 99-266 290-479 (503)
235 3ney_A 55 kDa erythrocyte memb 97.6 1.3E-05 4.5E-10 67.9 0.8 43 103-145 20-64 (197)
236 2px0_A Flagellar biosynthesis 97.6 0.00034 1.2E-08 62.9 10.0 93 158-264 184-278 (296)
237 2yv5_A YJEQ protein; hydrolase 97.6 0.00014 4.7E-09 65.7 7.3 25 101-126 164-188 (302)
238 2rcn_A Probable GTPase ENGC; Y 97.5 4.2E-05 1.4E-09 70.7 3.6 26 102-127 215-240 (358)
239 4dzz_A Plasmid partitioning pr 97.5 0.00035 1.2E-08 58.4 8.9 85 158-255 77-161 (206)
240 1vma_A Cell division protein F 97.5 0.00016 5.4E-09 65.4 6.9 24 102-125 104-127 (306)
241 2xxa_A Signal recognition part 97.5 0.00047 1.6E-08 65.3 9.9 68 158-237 185-255 (433)
242 1zu4_A FTSY; GTPase, signal re 97.4 0.00032 1.1E-08 63.8 7.5 93 158-264 193-293 (320)
243 1u0l_A Probable GTPase ENGC; p 97.4 0.00021 7.2E-09 64.4 6.2 26 101-126 168-193 (301)
244 1rj9_A FTSY, signal recognitio 97.3 0.00053 1.8E-08 61.9 8.0 23 103-125 103-125 (304)
245 1ex7_A Guanylate kinase; subst 97.3 0.00013 4.4E-09 61.2 3.0 43 105-147 4-48 (186)
246 1t9h_A YLOQ, probable GTPase E 97.2 0.00023 7.8E-09 64.4 4.6 82 185-271 84-171 (307)
247 1kgd_A CASK, peripheral plasma 97.2 0.00018 6.2E-09 59.5 3.2 40 104-143 7-48 (180)
248 3cwq_A Para family chromosome 97.1 0.0046 1.6E-07 52.3 11.0 82 158-255 69-152 (209)
249 1ls1_A Signal recognition part 97.0 0.0013 4.4E-08 59.1 7.3 93 158-264 182-276 (295)
250 2rcn_A Probable GTPase ENGC; Y 97.0 0.0021 7.4E-08 59.2 8.6 81 185-271 128-213 (358)
251 1lvg_A Guanylate kinase, GMP k 96.9 0.0004 1.4E-08 58.5 3.1 24 103-126 5-28 (198)
252 1ye8_A Protein THEP1, hypothet 96.9 0.00044 1.5E-08 57.4 3.2 23 104-126 2-24 (178)
253 1z6g_A Guanylate kinase; struc 96.9 0.00041 1.4E-08 59.3 3.2 32 95-126 16-47 (218)
254 3tif_A Uncharacterized ABC tra 96.9 0.00055 1.9E-08 59.4 3.5 32 95-126 24-55 (235)
255 2pcj_A ABC transporter, lipopr 96.8 0.00059 2E-08 58.7 3.3 32 95-126 23-54 (224)
256 3tau_A Guanylate kinase, GMP k 96.8 0.0007 2.4E-08 57.3 3.6 39 104-142 10-50 (208)
257 3tr0_A Guanylate kinase, GMP k 96.7 0.00076 2.6E-08 56.3 3.3 25 102-126 7-31 (205)
258 2ffh_A Protein (FFH); SRP54, s 96.7 0.0036 1.2E-07 59.1 8.2 69 158-237 182-252 (425)
259 1g6h_A High-affinity branched- 96.7 0.0008 2.7E-08 59.1 3.5 33 94-126 25-57 (257)
260 2cbz_A Multidrug resistance-as 96.7 0.0008 2.7E-08 58.4 3.4 33 94-126 23-55 (237)
261 3gfo_A Cobalt import ATP-bindi 96.7 0.00081 2.8E-08 59.8 3.5 33 94-126 26-58 (275)
262 1sgw_A Putative ABC transporte 96.7 0.00079 2.7E-08 57.6 3.3 33 94-126 27-59 (214)
263 1b0u_A Histidine permease; ABC 96.7 0.00084 2.9E-08 59.2 3.5 32 95-126 25-56 (262)
264 2onk_A Molybdate/tungstate ABC 96.7 0.00094 3.2E-08 58.1 3.8 33 93-126 16-48 (240)
265 2ff7_A Alpha-hemolysin translo 96.7 0.00084 2.9E-08 58.7 3.4 33 94-126 27-59 (247)
266 2pze_A Cystic fibrosis transme 96.7 0.00087 3E-08 57.9 3.5 33 94-126 26-58 (229)
267 1s96_A Guanylate kinase, GMP k 96.7 0.0007 2.4E-08 58.1 2.8 27 101-127 15-41 (219)
268 4g1u_C Hemin import ATP-bindin 96.7 0.00082 2.8E-08 59.4 3.2 33 94-126 29-61 (266)
269 2olj_A Amino acid ABC transpor 96.7 0.00092 3.2E-08 59.0 3.5 33 94-126 42-74 (263)
270 1ji0_A ABC transporter; ATP bi 96.7 0.00093 3.2E-08 58.1 3.4 32 95-126 25-56 (240)
271 1znw_A Guanylate kinase, GMP k 96.6 0.00099 3.4E-08 56.2 3.3 28 100-127 18-45 (207)
272 3a00_A Guanylate kinase, GMP k 96.6 0.00086 2.9E-08 55.6 2.9 23 105-127 4-26 (186)
273 2ihy_A ABC transporter, ATP-bi 96.6 0.001 3.4E-08 59.3 3.5 33 94-126 39-71 (279)
274 1vpl_A ABC transporter, ATP-bi 96.6 0.0011 3.7E-08 58.3 3.5 33 94-126 33-65 (256)
275 2ixe_A Antigen peptide transpo 96.6 0.0011 3.8E-08 58.8 3.5 32 95-126 38-69 (271)
276 1htw_A HI0065; nucleotide-bind 96.6 0.00097 3.3E-08 54.2 2.8 27 100-126 31-57 (158)
277 3nh6_A ATP-binding cassette SU 96.6 0.00083 2.8E-08 60.7 2.6 34 93-126 71-104 (306)
278 2qi9_C Vitamin B12 import ATP- 96.6 0.0011 3.8E-08 58.0 3.3 32 95-126 19-50 (249)
279 1zp6_A Hypothetical protein AT 96.6 0.0012 4.1E-08 54.5 3.2 22 104-125 11-32 (191)
280 2v9p_A Replication protein E1; 96.6 0.0012 4.2E-08 59.5 3.4 31 95-125 119-149 (305)
281 2yz2_A Putative ABC transporte 96.5 0.0013 4.6E-08 58.0 3.5 32 95-126 26-57 (266)
282 2qor_A Guanylate kinase; phosp 96.5 0.00093 3.2E-08 56.2 2.2 24 103-126 13-36 (204)
283 1mv5_A LMRA, multidrug resista 96.5 0.00086 3E-08 58.4 2.0 32 95-126 21-52 (243)
284 2j41_A Guanylate kinase; GMP, 96.5 0.0015 5E-08 54.6 3.3 26 101-126 5-30 (207)
285 3c8u_A Fructokinase; YP_612366 96.5 0.0012 4E-08 55.8 2.6 23 103-125 23-45 (208)
286 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0011 3.8E-08 57.9 2.6 31 95-125 22-52 (250)
287 2zu0_C Probable ATP-dependent 96.5 0.0012 4E-08 58.4 2.7 32 94-125 38-69 (267)
288 3tui_C Methionine import ATP-b 96.5 0.0017 5.9E-08 60.0 3.9 32 95-126 47-78 (366)
289 2ghi_A Transport protein; mult 96.4 0.0011 3.8E-08 58.4 2.3 33 94-126 38-70 (260)
290 4gp7_A Metallophosphoesterase; 96.4 0.00094 3.2E-08 54.7 1.5 22 102-123 9-30 (171)
291 3fvq_A Fe(3+) IONS import ATP- 96.4 0.0019 6.6E-08 59.5 3.7 33 94-126 22-54 (359)
292 2nq2_C Hypothetical ABC transp 96.3 0.0013 4.4E-08 57.7 2.2 32 95-126 24-55 (253)
293 3lnc_A Guanylate kinase, GMP k 96.3 0.00087 3E-08 57.5 1.1 29 98-126 23-52 (231)
294 2bbs_A Cystic fibrosis transme 96.3 0.002 6.9E-08 57.6 3.5 33 94-126 56-88 (290)
295 1kag_A SKI, shikimate kinase I 96.3 0.0022 7.5E-08 52.0 3.2 23 103-125 5-27 (173)
296 1z47_A CYSA, putative ABC-tran 96.3 0.0024 8.1E-08 58.8 3.7 33 94-126 33-65 (355)
297 2yyz_A Sugar ABC transporter, 96.3 0.0024 8.4E-08 58.9 3.8 33 94-126 21-53 (359)
298 3rlf_A Maltose/maltodextrin im 96.3 0.0025 8.6E-08 59.2 3.9 33 94-126 21-53 (381)
299 2it1_A 362AA long hypothetical 96.3 0.0026 9E-08 58.7 3.9 33 94-126 21-53 (362)
300 2pjz_A Hypothetical protein ST 96.2 0.0017 5.8E-08 57.3 2.4 32 94-126 23-54 (263)
301 3vaa_A Shikimate kinase, SK; s 96.2 0.0026 8.9E-08 53.2 3.4 31 95-125 18-48 (199)
302 1v43_A Sugar-binding transport 96.2 0.0028 9.7E-08 58.7 3.9 33 94-126 29-61 (372)
303 2jeo_A Uridine-cytidine kinase 96.2 0.0022 7.4E-08 55.6 2.9 31 95-125 18-48 (245)
304 2bdt_A BH3686; alpha-beta prot 96.2 0.0023 8E-08 52.8 2.9 21 104-124 4-24 (189)
305 3asz_A Uridine kinase; cytidin 96.2 0.0022 7.5E-08 53.9 2.8 22 104-125 8-29 (211)
306 3b85_A Phosphate starvation-in 96.2 0.0018 6E-08 55.1 2.1 26 100-125 20-45 (208)
307 1g29_1 MALK, maltose transport 96.2 0.0029 9.8E-08 58.7 3.7 33 94-126 21-53 (372)
308 2gza_A Type IV secretion syste 96.2 0.0029 9.8E-08 58.4 3.7 33 94-126 167-199 (361)
309 3end_A Light-independent proto 96.1 0.024 8.3E-07 50.5 9.6 67 158-234 158-225 (307)
310 4ido_A Atlastin-1; GTPase, GTP 96.1 0.017 5.7E-07 54.8 8.8 22 102-123 67-88 (457)
311 3d31_A Sulfate/molybdate ABC t 96.1 0.0025 8.5E-08 58.6 3.0 34 93-126 17-50 (348)
312 1np6_A Molybdopterin-guanine d 96.1 0.0032 1.1E-07 51.9 3.4 24 102-125 6-29 (174)
313 2eyu_A Twitching motility prot 96.1 0.0026 9E-08 56.0 3.0 23 103-125 26-48 (261)
314 2i3b_A HCR-ntpase, human cance 96.1 0.0029 1E-07 52.9 3.0 23 104-126 3-25 (189)
315 4eun_A Thermoresistant glucoki 96.1 0.0034 1.2E-07 52.5 3.4 23 103-125 30-52 (200)
316 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0029 9.9E-08 57.7 3.1 32 95-126 164-195 (330)
317 1oxx_K GLCV, glucose, ABC tran 96.0 0.0022 7.6E-08 59.0 2.2 33 94-126 23-55 (353)
318 2f1r_A Molybdopterin-guanine d 96.0 0.0021 7.1E-08 52.9 1.5 23 103-125 3-25 (171)
319 2bbw_A Adenylate kinase 4, AK4 96.0 0.0038 1.3E-07 54.0 3.2 21 103-123 28-48 (246)
320 1cke_A CK, MSSA, protein (cyti 95.9 0.0042 1.4E-07 52.7 3.3 23 103-125 6-28 (227)
321 4a74_A DNA repair and recombin 95.9 0.0035 1.2E-07 53.1 2.8 23 103-125 26-48 (231)
322 3aez_A Pantothenate kinase; tr 95.9 0.0037 1.3E-07 56.5 3.0 25 101-125 89-113 (312)
323 2ehv_A Hypothetical protein PH 95.9 0.0042 1.4E-07 53.3 3.1 23 101-123 29-51 (251)
324 1bif_A 6-phosphofructo-2-kinas 95.9 0.0012 4.3E-08 63.0 -0.3 105 103-216 40-148 (469)
325 1knq_A Gluconate kinase; ALFA/ 95.9 0.0042 1.4E-07 50.5 2.9 22 104-125 10-31 (175)
326 2npi_A Protein CLP1; CLP1-PCF1 95.9 0.0042 1.4E-07 59.2 3.3 32 95-126 131-162 (460)
327 3b60_A Lipid A export ATP-bind 95.8 0.0043 1.5E-07 60.8 3.5 34 93-126 360-393 (582)
328 1lw7_A Transcriptional regulat 95.8 0.0038 1.3E-07 57.5 2.7 25 102-126 170-194 (365)
329 3uie_A Adenylyl-sulfate kinase 95.8 0.0049 1.7E-07 51.5 3.1 22 104-125 27-48 (200)
330 3gd7_A Fusion complex of cysti 95.8 0.0037 1.3E-07 58.3 2.5 34 93-126 38-71 (390)
331 2if2_A Dephospho-COA kinase; a 95.8 0.0051 1.7E-07 51.3 3.2 22 103-124 2-23 (204)
332 3b5x_A Lipid A export ATP-bind 95.8 0.0049 1.7E-07 60.5 3.5 33 94-126 361-393 (582)
333 3kb2_A SPBC2 prophage-derived 95.7 0.0054 1.9E-07 49.3 3.1 22 104-125 3-24 (173)
334 2oap_1 GSPE-2, type II secreti 95.7 0.0055 1.9E-07 59.2 3.6 32 95-126 253-284 (511)
335 3lw7_A Adenylate kinase relate 95.7 0.0062 2.1E-07 48.9 3.3 19 104-122 3-21 (179)
336 2yl4_A ATP-binding cassette SU 95.6 0.0043 1.5E-07 61.0 2.6 34 93-126 361-394 (595)
337 3ec2_A DNA replication protein 95.6 0.005 1.7E-07 50.4 2.6 24 102-125 38-61 (180)
338 1jjv_A Dephospho-COA kinase; P 95.6 0.0066 2.3E-07 50.7 3.1 21 104-124 4-24 (206)
339 3jvv_A Twitching mobility prot 95.6 0.0057 1.9E-07 56.3 2.9 22 104-125 125-146 (356)
340 3qf4_B Uncharacterized ABC tra 95.5 0.0049 1.7E-07 60.7 2.5 33 94-126 373-405 (598)
341 3t61_A Gluconokinase; PSI-biol 95.5 0.0065 2.2E-07 50.7 2.9 23 103-125 19-41 (202)
342 4a82_A Cystic fibrosis transme 95.5 0.0042 1.4E-07 60.9 1.9 34 93-126 358-391 (578)
343 1nij_A Hypothetical protein YJ 95.5 0.0048 1.6E-07 55.8 2.1 25 102-126 4-28 (318)
344 1ly1_A Polynucleotide kinase; 95.5 0.0077 2.6E-07 48.8 3.1 21 104-124 4-24 (181)
345 2jaq_A Deoxyguanosine kinase; 95.5 0.0079 2.7E-07 49.8 3.2 22 104-125 2-23 (205)
346 2qt1_A Nicotinamide riboside k 95.4 0.0071 2.4E-07 50.6 2.9 23 103-125 22-44 (207)
347 3cm0_A Adenylate kinase; ATP-b 95.4 0.0077 2.6E-07 49.3 3.0 22 103-124 5-26 (186)
348 1xjc_A MOBB protein homolog; s 95.4 0.009 3.1E-07 49.0 3.3 24 102-125 4-27 (169)
349 1sq5_A Pantothenate kinase; P- 95.4 0.007 2.4E-07 54.4 2.8 24 102-125 80-103 (308)
350 1y63_A LMAJ004144AAA protein; 95.4 0.0085 2.9E-07 49.3 3.1 25 101-125 9-33 (184)
351 2kjq_A DNAA-related protein; s 95.4 0.0056 1.9E-07 49.0 1.8 24 103-126 37-60 (149)
352 3qf4_A ABC transporter, ATP-bi 95.3 0.006 2E-07 60.0 2.3 34 93-126 360-393 (587)
353 3nwj_A ATSK2; P loop, shikimat 95.3 0.0093 3.2E-07 52.1 3.3 30 95-124 38-70 (250)
354 2ewv_A Twitching motility prot 95.3 0.0077 2.6E-07 55.7 2.9 25 101-125 135-159 (372)
355 1qhx_A CPT, protein (chloramph 95.3 0.0095 3.3E-07 48.3 3.1 22 104-125 5-26 (178)
356 3fb4_A Adenylate kinase; psych 95.3 0.01 3.5E-07 49.9 3.4 22 104-125 2-23 (216)
357 2v54_A DTMP kinase, thymidylat 95.3 0.01 3.5E-07 49.2 3.3 24 102-125 4-27 (204)
358 4e22_A Cytidylate kinase; P-lo 95.3 0.011 3.8E-07 51.4 3.6 22 102-123 27-48 (252)
359 3dl0_A Adenylate kinase; phosp 95.2 0.011 3.7E-07 49.8 3.4 22 104-125 2-23 (216)
360 2x8a_A Nuclear valosin-contain 95.2 0.0089 3E-07 52.8 2.9 21 105-125 47-67 (274)
361 1rz3_A Hypothetical protein rb 95.2 0.0091 3.1E-07 50.0 2.8 22 103-124 23-44 (201)
362 1nks_A Adenylate kinase; therm 95.2 0.01 3.5E-07 48.5 3.0 22 104-125 3-24 (194)
363 1p9r_A General secretion pathw 95.2 0.0091 3.1E-07 56.2 2.9 22 104-125 169-190 (418)
364 1kht_A Adenylate kinase; phosp 95.1 0.013 4.5E-07 47.9 3.4 22 103-124 4-25 (192)
365 1ixz_A ATP-dependent metallopr 95.1 0.011 3.7E-07 51.2 3.0 22 104-125 51-72 (254)
366 3b9q_A Chloroplast SRP recepto 95.1 0.0082 2.8E-07 53.9 2.2 27 99-125 97-123 (302)
367 2rhm_A Putative kinase; P-loop 95.1 0.011 3.8E-07 48.5 2.8 23 103-125 6-28 (193)
368 3kta_A Chromosome segregation 95.0 0.012 4.1E-07 48.0 3.0 22 104-125 28-49 (182)
369 1aky_A Adenylate kinase; ATP:A 95.0 0.014 4.9E-07 49.3 3.5 24 102-125 4-27 (220)
370 3iij_A Coilin-interacting nucl 95.0 0.014 4.7E-07 47.6 3.3 24 102-125 11-34 (180)
371 2c95_A Adenylate kinase 1; tra 95.0 0.015 5.1E-07 47.9 3.5 26 100-125 7-32 (196)
372 3tqc_A Pantothenate kinase; bi 95.0 0.011 3.8E-07 53.6 3.0 22 104-125 94-115 (321)
373 3trf_A Shikimate kinase, SK; a 95.0 0.015 5E-07 47.6 3.4 24 102-125 5-28 (185)
374 1yqt_A RNAse L inhibitor; ATP- 94.9 0.012 4.2E-07 57.1 3.2 28 99-126 44-71 (538)
375 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.013 4.4E-07 49.4 2.9 23 103-125 24-46 (235)
376 4f4c_A Multidrug resistance pr 94.9 0.0072 2.5E-07 64.9 1.6 34 93-126 1096-1129(1321)
377 3n70_A Transport activator; si 94.9 0.11 3.7E-06 40.8 8.2 25 101-125 23-47 (145)
378 1via_A Shikimate kinase; struc 94.9 0.014 4.9E-07 47.3 3.1 23 103-125 5-27 (175)
379 2pt5_A Shikimate kinase, SK; a 94.9 0.017 5.7E-07 46.4 3.4 22 104-125 2-23 (168)
380 3ozx_A RNAse L inhibitor; ATP 94.9 0.012 4E-07 57.3 2.9 23 104-126 27-49 (538)
381 2obl_A ESCN; ATPase, hydrolase 94.9 0.011 3.9E-07 54.1 2.6 30 97-126 66-95 (347)
382 2vp4_A Deoxynucleoside kinase; 94.8 0.0098 3.4E-07 50.9 2.0 23 103-125 21-43 (230)
383 4b4t_L 26S protease subunit RP 94.8 0.086 3E-06 49.7 8.6 23 103-125 216-238 (437)
384 1e4v_A Adenylate kinase; trans 94.8 0.016 5.5E-07 48.8 3.2 22 104-125 2-23 (214)
385 1gtv_A TMK, thymidylate kinase 94.8 0.0067 2.3E-07 50.8 0.8 22 104-125 2-23 (214)
386 1nn5_A Similar to deoxythymidy 94.8 0.017 5.8E-07 48.3 3.3 24 101-124 8-31 (215)
387 2bwj_A Adenylate kinase 5; pho 94.8 0.019 6.3E-07 47.4 3.5 26 100-125 10-35 (199)
388 3j16_B RLI1P; ribosome recycli 94.8 0.014 4.9E-07 57.5 3.2 23 104-126 105-127 (608)
389 3euj_A Chromosome partition pr 94.8 0.012 4E-07 56.4 2.5 29 96-125 24-52 (483)
390 2plr_A DTMP kinase, probable t 94.7 0.017 5.7E-07 48.1 3.1 23 103-125 5-27 (213)
391 1iy2_A ATP-dependent metallopr 94.7 0.015 5.1E-07 51.1 3.0 23 104-126 75-97 (278)
392 2wwf_A Thymidilate kinase, put 94.7 0.017 5.8E-07 48.2 3.2 24 102-125 10-33 (212)
393 1zd8_A GTP:AMP phosphotransfer 94.7 0.018 6.2E-07 48.9 3.4 24 102-125 7-30 (227)
394 2yvu_A Probable adenylyl-sulfa 94.7 0.016 5.6E-07 47.5 3.0 23 103-125 14-36 (186)
395 1cr0_A DNA primase/helicase; R 94.7 0.015 5E-07 51.7 2.8 26 100-125 33-58 (296)
396 2pez_A Bifunctional 3'-phospho 94.7 0.017 5.9E-07 47.0 3.0 22 104-125 7-28 (179)
397 4f4c_A Multidrug resistance pr 94.7 0.016 5.3E-07 62.3 3.3 34 93-126 435-468 (1321)
398 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.23 7.7E-06 44.7 10.7 23 103-125 46-68 (322)
399 1in4_A RUVB, holliday junction 94.6 0.016 5.4E-07 52.6 2.9 23 103-125 52-74 (334)
400 1odf_A YGR205W, hypothetical 3 94.6 0.017 5.7E-07 51.6 3.0 23 103-125 32-54 (290)
401 2og2_A Putative signal recogni 94.6 0.013 4.4E-07 54.0 2.2 26 100-125 155-180 (359)
402 1tev_A UMP-CMP kinase; ploop, 94.6 0.02 6.8E-07 46.9 3.1 22 104-125 5-26 (196)
403 2pbr_A DTMP kinase, thymidylat 94.5 0.022 7.4E-07 46.6 3.4 21 104-124 2-22 (195)
404 1svm_A Large T antigen; AAA+ f 94.5 0.019 6.6E-07 53.2 3.3 26 100-125 167-192 (377)
405 4b4t_K 26S protease regulatory 94.5 0.14 4.9E-06 48.1 9.2 22 104-125 208-229 (428)
406 2z0h_A DTMP kinase, thymidylat 94.5 0.02 7E-07 47.0 3.1 22 104-125 2-23 (197)
407 2dpy_A FLII, flagellum-specifi 94.5 0.016 5.6E-07 54.8 2.7 30 97-126 152-181 (438)
408 1zak_A Adenylate kinase; ATP:A 94.5 0.021 7.1E-07 48.3 3.1 23 103-125 6-28 (222)
409 3a4m_A L-seryl-tRNA(SEC) kinas 94.5 0.021 7.1E-07 49.9 3.2 23 103-125 5-27 (260)
410 2cdn_A Adenylate kinase; phosp 94.5 0.024 8.1E-07 47.1 3.4 23 103-125 21-43 (201)
411 2iyv_A Shikimate kinase, SK; t 94.5 0.022 7.5E-07 46.5 3.1 22 103-124 3-24 (184)
412 3tlx_A Adenylate kinase 2; str 94.4 0.022 7.4E-07 49.3 3.1 25 101-125 28-52 (243)
413 1n0w_A DNA repair protein RAD5 94.4 0.021 7.3E-07 48.5 3.0 24 102-125 24-47 (243)
414 3g5u_A MCG1178, multidrug resi 94.4 0.018 6.1E-07 61.7 3.0 34 93-126 407-440 (1284)
415 1f2t_A RAD50 ABC-ATPase; DNA d 94.3 0.025 8.5E-07 45.1 3.1 19 105-123 26-44 (149)
416 1vht_A Dephospho-COA kinase; s 94.3 0.022 7.5E-07 48.0 3.0 22 103-124 5-26 (218)
417 1e6c_A Shikimate kinase; phosp 94.3 0.026 8.8E-07 45.4 3.2 23 103-125 3-25 (173)
418 3be4_A Adenylate kinase; malar 94.3 0.028 9.5E-07 47.5 3.6 23 103-125 6-28 (217)
419 1m7g_A Adenylylsulfate kinase; 94.3 0.024 8.4E-07 47.6 3.2 26 100-125 23-48 (211)
420 1uf9_A TT1252 protein; P-loop, 94.3 0.023 7.9E-07 46.9 2.9 23 103-125 9-31 (203)
421 2xb4_A Adenylate kinase; ATP-b 94.3 0.027 9.2E-07 47.9 3.4 22 104-125 2-23 (223)
422 1yqt_A RNAse L inhibitor; ATP- 94.3 0.019 6.5E-07 55.8 2.7 27 100-126 310-336 (538)
423 3qf7_A RAD50; ABC-ATPase, ATPa 94.3 0.023 7.8E-07 52.4 3.1 19 105-123 26-44 (365)
424 3sr0_A Adenylate kinase; phosp 94.3 0.027 9.3E-07 47.6 3.4 23 103-125 1-23 (206)
425 3bk7_A ABC transporter ATP-bin 94.3 0.022 7.4E-07 56.2 3.1 28 99-126 114-141 (607)
426 1gvn_B Zeta; postsegregational 94.2 0.021 7.3E-07 50.7 2.8 23 103-125 34-56 (287)
427 2ze6_A Isopentenyl transferase 94.2 0.023 8E-07 49.4 3.0 22 104-125 3-24 (253)
428 1ukz_A Uridylate kinase; trans 94.2 0.026 9E-07 46.8 3.1 23 103-125 16-38 (203)
429 3g5u_A MCG1178, multidrug resi 94.2 0.025 8.5E-07 60.6 3.7 34 93-126 1050-1083(1284)
430 1jbk_A CLPB protein; beta barr 94.2 0.025 8.7E-07 45.6 3.0 23 103-125 44-66 (195)
431 1qf9_A UMP/CMP kinase, protein 94.1 0.026 8.8E-07 46.1 2.9 22 104-125 8-29 (194)
432 3ozx_A RNAse L inhibitor; ATP 94.1 0.019 6.6E-07 55.7 2.4 27 100-126 292-318 (538)
433 2cvh_A DNA repair and recombin 94.1 0.029 9.8E-07 46.9 3.2 22 103-124 21-42 (220)
434 2iw3_A Elongation factor 3A; a 94.1 0.016 5.5E-07 60.0 1.9 34 93-126 690-723 (986)
435 3bk7_A ABC transporter ATP-bin 94.0 0.023 7.8E-07 56.0 2.7 27 100-126 380-406 (607)
436 3zvl_A Bifunctional polynucleo 94.0 0.18 6.1E-06 47.2 8.7 23 103-125 259-281 (416)
437 2vli_A Antibiotic resistance p 93.9 0.024 8.3E-07 46.0 2.3 23 103-125 6-28 (183)
438 3j16_B RLI1P; ribosome recycli 93.9 0.03 1E-06 55.2 3.2 24 104-127 380-403 (608)
439 1lv7_A FTSH; alpha/beta domain 93.8 0.036 1.2E-06 47.9 3.3 24 102-125 45-68 (257)
440 1ak2_A Adenylate kinase isoenz 93.8 0.04 1.4E-06 47.0 3.5 23 103-125 17-39 (233)
441 4eaq_A DTMP kinase, thymidylat 93.7 0.032 1.1E-06 47.8 2.8 24 102-125 26-49 (229)
442 2p5t_B PEZT; postsegregational 93.6 0.023 7.7E-07 49.4 1.7 23 103-125 33-55 (253)
443 1qhl_A Protein (cell division 93.6 0.0064 2.2E-07 52.4 -1.8 22 105-126 30-51 (227)
444 2iw3_A Elongation factor 3A; a 93.6 0.026 8.9E-07 58.4 2.3 31 95-125 454-484 (986)
445 1zuh_A Shikimate kinase; alpha 93.6 0.044 1.5E-06 44.0 3.3 23 103-125 8-30 (168)
446 3r20_A Cytidylate kinase; stru 93.5 0.047 1.6E-06 47.1 3.5 23 102-124 9-31 (233)
447 4aby_A DNA repair protein RECN 93.5 0.011 3.8E-07 55.0 -0.6 29 95-124 54-82 (415)
448 1nlf_A Regulatory protein REPA 93.4 0.038 1.3E-06 48.6 2.8 26 99-124 27-52 (279)
449 1uj2_A Uridine-cytidine kinase 93.4 0.041 1.4E-06 47.6 3.0 22 103-124 23-44 (252)
450 1tue_A Replication protein E1; 93.3 0.044 1.5E-06 46.4 3.0 22 104-125 60-81 (212)
451 3bos_A Putative DNA replicatio 93.3 0.043 1.5E-06 46.2 2.9 24 102-125 52-75 (242)
452 1q3t_A Cytidylate kinase; nucl 93.3 0.048 1.7E-06 46.6 3.3 24 101-124 15-38 (236)
453 2w58_A DNAI, primosome compone 93.2 0.045 1.6E-06 45.3 2.9 23 103-125 55-77 (202)
454 3umf_A Adenylate kinase; rossm 93.2 0.053 1.8E-06 46.2 3.3 26 100-125 27-52 (217)
455 2p65_A Hypothetical protein PF 93.2 0.035 1.2E-06 44.7 2.0 24 102-125 43-66 (187)
456 2grj_A Dephospho-COA kinase; T 93.1 0.049 1.7E-06 45.4 2.9 23 103-125 13-35 (192)
457 3cr8_A Sulfate adenylyltranfer 93.1 0.035 1.2E-06 54.0 2.3 25 101-125 368-392 (552)
458 4b4t_I 26S protease regulatory 93.0 0.39 1.3E-05 45.1 9.2 23 103-125 217-239 (437)
459 3ux8_A Excinuclease ABC, A sub 93.0 0.023 7.8E-07 56.7 0.7 29 95-123 341-369 (670)
460 1ltq_A Polynucleotide kinase; 93.0 0.053 1.8E-06 47.9 3.1 21 104-124 4-24 (301)
461 3qks_A DNA double-strand break 92.9 0.058 2E-06 45.2 3.1 19 105-123 26-44 (203)
462 4b4t_J 26S protease regulatory 92.9 0.55 1.9E-05 43.7 10.0 23 103-125 183-205 (405)
463 3ake_A Cytidylate kinase; CMP 92.9 0.055 1.9E-06 44.8 2.9 22 104-125 4-25 (208)
464 4b4t_H 26S protease regulatory 92.9 0.34 1.2E-05 45.9 8.6 24 102-125 243-266 (467)
465 2f6r_A COA synthase, bifunctio 92.8 0.056 1.9E-06 47.8 2.9 22 103-124 76-97 (281)
466 3gmt_A Adenylate kinase; ssgci 92.6 0.074 2.5E-06 45.7 3.4 23 103-125 9-31 (230)
467 1njg_A DNA polymerase III subu 92.6 0.062 2.1E-06 44.8 2.9 22 104-125 47-68 (250)
468 1zcb_A G alpha I/13; GTP-bindi 92.5 0.061 2.1E-06 49.5 2.9 24 99-122 30-53 (362)
469 1sxj_E Activator 1 40 kDa subu 92.5 0.056 1.9E-06 48.8 2.7 23 102-124 36-58 (354)
470 3b9p_A CG5977-PA, isoform A; A 92.5 0.063 2.1E-06 47.3 2.9 23 103-125 55-77 (297)
471 2dr3_A UPF0273 protein PH0284; 92.4 0.069 2.4E-06 45.3 3.0 21 103-123 24-44 (247)
472 3vfd_A Spastin; ATPase, microt 92.4 0.48 1.6E-05 43.6 8.9 23 103-125 149-171 (389)
473 2qmh_A HPR kinase/phosphorylas 92.4 0.076 2.6E-06 44.7 3.0 24 103-126 35-58 (205)
474 3h4m_A Proteasome-activating n 92.3 0.073 2.5E-06 46.5 3.1 25 101-125 50-74 (285)
475 2chg_A Replication factor C sm 92.3 0.072 2.5E-06 43.9 2.9 23 103-125 39-61 (226)
476 1pzn_A RAD51, DNA repair and r 92.3 0.064 2.2E-06 49.0 2.8 26 101-126 130-155 (349)
477 2zan_A Vacuolar protein sortin 92.3 0.4 1.4E-05 45.1 8.4 23 103-125 168-190 (444)
478 3pvs_A Replication-associated 92.2 0.3 1E-05 46.2 7.3 25 101-125 49-73 (447)
479 3cf0_A Transitional endoplasmi 92.2 0.079 2.7E-06 47.1 3.2 24 102-125 49-72 (301)
480 1fnn_A CDC6P, cell division co 92.1 0.083 2.8E-06 48.1 3.2 22 104-125 46-67 (389)
481 2qz4_A Paraplegin; AAA+, SPG7, 92.1 0.086 3E-06 45.3 3.2 24 102-125 39-62 (262)
482 1sxj_C Activator 1 40 kDa subu 91.9 0.094 3.2E-06 47.4 3.4 24 102-125 46-69 (340)
483 1sxj_D Activator 1 41 kDa subu 91.9 0.099 3.4E-06 47.0 3.5 23 103-125 59-81 (353)
484 1tf7_A KAIC; homohexamer, hexa 91.9 0.072 2.5E-06 51.4 2.8 24 99-122 36-59 (525)
485 2qby_A CDC6 homolog 1, cell di 91.9 0.078 2.7E-06 48.0 2.8 24 102-125 45-68 (386)
486 1l8q_A Chromosomal replication 91.8 0.081 2.8E-06 47.3 2.9 23 103-125 38-60 (324)
487 3qkt_A DNA double-strand break 91.8 0.092 3.1E-06 47.6 3.1 19 105-123 26-44 (339)
488 1e69_A Chromosome segregation 91.6 0.07 2.4E-06 48.0 2.2 20 104-123 26-45 (322)
489 3t15_A Ribulose bisphosphate c 91.6 0.089 3E-06 46.7 2.8 22 104-125 38-59 (293)
490 1w1w_A Structural maintenance 91.4 0.094 3.2E-06 49.2 2.9 22 104-125 28-49 (430)
491 2qen_A Walker-type ATPase; unk 91.4 0.079 2.7E-06 47.3 2.2 24 102-125 31-54 (350)
492 2ius_A DNA translocase FTSK; n 91.3 0.091 3.1E-06 50.6 2.7 28 97-124 162-189 (512)
493 2ga8_A Hypothetical 39.9 kDa p 91.3 0.13 4.4E-06 47.2 3.5 22 103-124 25-46 (359)
494 3syl_A Protein CBBX; photosynt 91.1 0.12 4.1E-06 45.6 3.2 23 103-125 68-90 (309)
495 4fcw_A Chaperone protein CLPB; 91.1 0.11 3.7E-06 45.9 2.9 22 104-125 49-70 (311)
496 2o5v_A DNA replication and rep 91.1 0.12 4E-06 47.5 3.1 21 104-124 28-48 (359)
497 2dhr_A FTSH; AAA+ protein, hex 91.1 0.1 3.6E-06 50.1 2.9 22 104-125 66-87 (499)
498 3d3q_A TRNA delta(2)-isopenten 91.0 0.12 4.1E-06 47.1 3.1 22 104-125 9-30 (340)
499 3crm_A TRNA delta(2)-isopenten 90.9 0.12 4.1E-06 46.8 3.0 22 104-125 7-28 (323)
500 3k1j_A LON protease, ATP-depen 90.9 0.14 4.9E-06 50.2 3.7 33 94-126 52-84 (604)
No 1
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=100.00 E-value=2.1e-43 Score=327.82 Aligned_cols=239 Identities=42% Similarity=0.694 Sum_probs=207.7
Q ss_pred ceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeehh
Q 021615 19 HIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLE 96 (310)
Q Consensus 19 ~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~ 96 (310)
.+.| +||+|+| +++++++||++++|++++|+||.||.||++|..+.+ ..|+.++.|.+|+.+.+.
T Consensus 86 ~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~-------------~~p~~~~~g~~g~~~~~~ 152 (342)
T 1lnz_A 86 VIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPAN-------------PAPQLSENGEPGKERYIV 152 (342)
T ss_dssp EEEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGSCBTTB-------------SSCCCCCCCCCCCEEEEE
T ss_pred EEEcCCccEEEeCCCCcEehhhhcCCcEEEEeCCCCCccCccccccccc-------------cccccccCCCCcchhhHh
Confidence 3455 8999999 689999999999999999999999999998875432 255778899999999999
Q ss_pred hhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615 97 LILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 176 (310)
Q Consensus 97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~ 176 (310)
+++|.+++|+|+|.||||||||+|+|++.++.+++++|||+.|+.+.+..... ..+.+|||||+++.++...+
T Consensus 153 leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-------~~~~l~DtPG~i~~a~~~~~ 225 (342)
T 1lnz_A 153 LELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-------RSFVMADLPGLIEGAHQGVG 225 (342)
T ss_dssp EEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-------CEEEEEEHHHHHHHTTCTTT
T ss_pred hhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-------ceEEEecCCCCcccccccch
Confidence 99999999999999999999999999999988899999999999998876531 27999999999988887788
Q ss_pred HHHHHHHHhhhcCEEEEecccCC---CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-cC
Q 021615 177 LGRNFLRHLRRTRLLVHVIDAAA---ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-IG 252 (310)
Q Consensus 177 l~~~~~~~l~~~d~il~VvD~s~---~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-~g 252 (310)
+...|++++++||++++|+|+++ ..+++++..|..+|..|.+.+.++|+++|+||+|+....+..+.+.+.+.. ..
T Consensus 226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~ 305 (342)
T 1lnz_A 226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYP 305 (342)
T ss_dssp THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCC
T ss_pred hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCC
Confidence 99999999999999999999998 788999999999999987766789999999999998765545555544432 35
Q ss_pred CCccccCccCCHHHHHHHHhhccCC
Q 021615 253 CDKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
+..+||+++.|+++++..+.....+
T Consensus 306 v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 306 VFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp BCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred EEEEECCCCcCHHHHHHHHHHHHhh
Confidence 6779999999999999998776643
No 2
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=100.00 E-value=3.1e-37 Score=292.74 Aligned_cols=237 Identities=44% Similarity=0.688 Sum_probs=202.4
Q ss_pred ceee-cceEEEc-CCCcEEEecCCCCceEEEecCCCCCCCCCCcccchhccccccccccccCchhhhhhcCCCCceeehh
Q 021615 19 HIHV-TGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLE 96 (310)
Q Consensus 19 ~~~~-~g~~~~~-~~~~~~~~l~~~~~~~~~~~gg~GG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~ 96 (310)
.+.| +||+|+| +++++++||++++|++++|+||.||.||++|..+.| ..|+.++.|.+|+.+.+.
T Consensus 85 ~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~-------------~~p~~~~~g~~g~~~~i~ 151 (416)
T 1udx_A 85 VIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSPTR-------------QAPRFAEAGEEGEKRRLR 151 (416)
T ss_dssp EEEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGGCCSSC-------------SSCCEEECCCCCCEEEEE
T ss_pred EEecCCccEEEecCCCcEEeeccCCCceEEEecCCCCCcccceeecccc-------------cCcccccCCCCceEeeee
Confidence 3455 8999999 689999999999999999999999999998875432 356788999999999999
Q ss_pred hhhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615 97 LILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 176 (310)
Q Consensus 97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~ 176 (310)
++++...+|+|||++|||||||+++|++..+.++++++||+.|+.+.+..... ..+.++||||+++.++...+
T Consensus 152 lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~-------~~~~l~DtpGli~~a~~~~~ 224 (416)
T 1udx_A 152 LELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-------ERFTLADIPGIIEGASEGKG 224 (416)
T ss_dssp EEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-------CEEEEEECCCCCCCGGGSCC
T ss_pred eEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc-------ceEEEEeccccccchhhhhh
Confidence 99999999999999999999999999999888899999999999998876431 26899999999987776677
Q ss_pred HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc--CCC
Q 021615 177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCD 254 (310)
Q Consensus 177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~--g~~ 254 (310)
+...|++++++|+.+++|+|++ ..+..++..+.+++..+...+..+|.++|+||+|+... +..+.+.+.+... .+.
T Consensus 225 L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~vi 302 (416)
T 1udx_A 225 LGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALAREGLAVL 302 (416)
T ss_dssp SCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSCEE
T ss_pred hhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCeEE
Confidence 7778889999999999999998 67788888888888877544457899999999999876 5566666666654 355
Q ss_pred ccccCccCCHHHHHHHHhhccCC
Q 021615 255 KVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
.+||+++.|+++++..+.....+
T Consensus 303 ~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 303 PVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEECCCccCHHHHHHHHHHHHHh
Confidence 68999999999999998765543
No 3
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.1e-24 Score=199.17 Aligned_cols=126 Identities=32% Similarity=0.535 Sum_probs=109.6
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
...++|+|||+||||||||+|+|++.++.+++|||||++|+.+.+.+.+. +++++||||++++++...+++.
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--------~i~l~D~pGl~~~a~~~~~~g~ 141 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--------KIQMLDLPGIIDGAKDGRGRGK 141 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--------EEEEEECGGGCCC-----CHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--------EEEEEeCCCccCCchhhhHHHH
Confidence 34578999999999999999999999988999999999999999987643 8999999999999999999999
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
+|+.+++.||++++|+|++ ++..+.+.+..+|..+...+..+|.++++||+|..
T Consensus 142 ~~l~~i~~ad~il~vvD~~--~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 142 QVIAVARTCNLLFIILDVN--KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHHCSEEEEEEETT--SHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHhcCccccccccC--ccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 9999999999999999998 46778888889999887766788999999999974
No 4
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.89 E-value=1.8e-22 Score=184.83 Aligned_cols=163 Identities=28% Similarity=0.330 Sum_probs=122.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCC-CCCCCccCCCceEEEeCCCCCcccc---CCchHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGD-PTLGAEKYSSEATLADLPGLIEGAH---LGKGLG 178 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~-~~~~~~~~~~~~~i~DtPG~~~~~~---~~~~l~ 178 (310)
.|+++|.||||||||+|+|++.+..+ ++.+.||.....+.+... . ..+.+|||||+.+... .+..+.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--------~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--------AQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--------EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--------CeEEEEECcCCCccccchhHHHHHH
Confidence 49999999999999999999998765 888999988777766543 2 2799999999987531 123344
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-hc----CC
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-KI----GC 253 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-~~----g~ 253 (310)
..+..++..+|++++|+|+++.....+...|.+.+.. .+.|+++|+||+|+....+......+.+. .+ .+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence 4556678899999999999988888877766777765 36899999999999832222233333332 33 35
Q ss_pred CccccCccCCHHHHHHHHhhccCCcc
Q 021615 254 DKVTSETELSSEDAVKSLSTEGGEAD 279 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~~~~~~ 279 (310)
..+||+++.|+++++..+.....+..
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccCC
Confidence 56999999999999999988775543
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.87 E-value=2.1e-22 Score=170.54 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=118.0
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
...++|+++|.+|||||||+++|++........+.++.......+..... . ..+.+|||||+.+...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~i~Dt~G~~~~~~------- 80 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK----T--IKLQIWDTAGQERFRT------- 80 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTE----E--EEEEEEEECCSGGGCT-------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE----E--EEEEEEECCCcHhhhh-------
Confidence 34578999999999999999999988765555555555554444443221 1 2689999999866532
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~ 256 (310)
....+++.+|++++|+|+++..+++....|+.++..+.. .+.|+++|+||+|+...... .+...+.... ..+.++
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 158 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEE
Confidence 233556789999999999998888888888888877643 46899999999999754321 1222223333 356669
Q ss_pred ccCccCCHHHHHHHHhhccC
Q 021615 257 TSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~~ 276 (310)
||+++.|++++|..+.....
T Consensus 159 Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 159 SAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999877653
No 6
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.87 E-value=2.9e-22 Score=163.99 Aligned_cols=157 Identities=27% Similarity=0.304 Sum_probs=106.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
++|+++|.+|+|||||+++|.+.... ..+++.+|.......+.... ..+.+|||||+.+.......+...+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~~ 73 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--------GRFLLVDTGGLWSGDKWEKKIQEKV 73 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--------EEEEEEECGGGCSSSSCCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--------ceEEEEECCCCCCccchHHHHHHHH
Confidence 68999999999999999999988754 36677777766665555432 2689999999987543334455556
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccCcc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETE 261 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~ 261 (310)
..+++.+|++++|+|+++...... ..+.+.+.. .+.|+++|+||+|+.+..+...++. .+....+.++|++++
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~Sa~~~ 146 (161)
T 2dyk_A 74 DRALEDAEVVLFAVDGRAELTQAD-YEVAEYLRR-----KGKPVILVATKVDDPKHELYLGPLY-GLGFGDPIPTSSEHA 146 (161)
T ss_dssp HHHTTTCSEEEEEEESSSCCCHHH-HHHHHHHHH-----HTCCEEEEEECCCSGGGGGGCGGGG-GGSSCSCEECBTTTT
T ss_pred HHHHHhCCEEEEEEECCCcccHhH-HHHHHHHHh-----cCCCEEEEEECcccccchHhHHHHH-hCCCCCeEEEecccC
Confidence 677889999999999998654433 233344443 3689999999999986543333332 111114567999999
Q ss_pred CCHHHHHHHHhhc
Q 021615 262 LSSEDAVKSLSTE 274 (310)
Q Consensus 262 ~gi~~l~~~l~~~ 274 (310)
.|++++|..+...
T Consensus 147 ~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 147 RGLEELLEAIWER 159 (161)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHh
Confidence 9999999998654
No 7
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.87 E-value=1.2e-21 Score=162.37 Aligned_cols=155 Identities=22% Similarity=0.368 Sum_probs=106.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC--chHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~--~~l~~~ 180 (310)
.+|+++|++|||||||+|+|++....++.+|++|.....+.+.... ..+.+|||||+.+..... +.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~l~i~Dt~G~~~~~~~~~~~~~~~~ 75 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--------EKFKVVDLPGVYSLTANSIDEIIARD 75 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--------EEEEEEECCCCSCSSSSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--------cEEEEEECCCcccCCCcchhHHHHHH
Confidence 5799999999999999999999876667788888877776665432 278999999998753221 123333
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~~~s 257 (310)
+++ ...+|++++|+|+++. +....|..++.. .+.|+++|+||+|+..... ..+.+.+.+ ...+.++|
T Consensus 76 ~~~-~~~~~~~i~v~D~~~~---~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~S 145 (165)
T 2wji_A 76 YII-NEKPDLVVNIVDATAL---ERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-GVKVVPLS 145 (165)
T ss_dssp HHH-HHCCSEEEEEEETTCH---HHHHHHHHHHHH-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECB
T ss_pred HHh-cCCCCEEEEEecCCch---hHhHHHHHHHHh-----cCCCEEEEEEchHhccccChhhHHHHHHHHh-CCCEEEEE
Confidence 332 1379999999999863 333445566654 3689999999999853211 133444333 24566799
Q ss_pred cCccCCHHHHHHHHhhcc
Q 021615 258 SETELSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~ 275 (310)
|+++.|++++|..+....
T Consensus 146 A~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 146 AAKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGGTBSHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 999999999999986643
No 8
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.86 E-value=1.3e-21 Score=178.58 Aligned_cols=163 Identities=24% Similarity=0.247 Sum_probs=115.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~~ 180 (310)
.+|+++|.||||||||+|+|++.+..+ ++.|.||.....+.+.... .++.+|||||+.+... .+..+...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--------~~l~l~DTpG~~~~~~~l~~~~~~~ 79 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--------RQIVFVDTPGLHKPMDALGEFMDQE 79 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--------EEEEEEECCCCCCCCSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--------cEEEEecCccccchhhHHHHHHHHH
Confidence 359999999999999999999998765 7788888866555554322 2789999999976422 11223445
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH-HhcCCCccccC
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-LKIGCDKVTSE 259 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l-~~~g~~~~sa~ 259 (310)
+..+++.+|++++|+|+++.....+ ..+++.+..+. .+.|+++|+||+|+...........+.+ ....+.++||+
T Consensus 80 ~~~~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 80 VYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV---GKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp HHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT---TTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTT
T ss_pred HHHHHhcCCEEEEEEECCCCCChHH-HHHHHHHHhhc---CCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCC
Confidence 5677889999999999988655543 34456666542 2689999999999986543122222222 01123458999
Q ss_pred ccCCHHHHHHHHhhccCC
Q 021615 260 TELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~~~ 277 (310)
++.|++++++.+...+.+
T Consensus 156 ~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 156 DERQVAELKADLLALMPE 173 (301)
T ss_dssp CHHHHHHHHHHHHTTCCB
T ss_pred CCCCHHHHHHHHHHhccc
Confidence 999999999999876643
No 9
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.86 E-value=1.2e-21 Score=161.68 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=108.6
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++........+.++.+.....+.... .. ..+.+|||||+.+.... +
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~l~D~~G~~~~~~~-------~ 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING----KK--VKLQIWDTAGQERFRTI-------T 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSS----CE--EEEEEECCTTGGGTSCC-------C
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC----EE--EEEEEEeCCCChhhhhh-------H
Confidence 36799999999999999999998775443333333333333343321 11 26899999998765332 2
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccC
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~ 259 (310)
..+++.+|++++|+|++++.+++....|...+..+.. .+.|+++|+||+|+.......+...+.... +.+.++||+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAK 147 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECC
Confidence 3456789999999999988778787888888776542 368999999999995432222222222333 345669999
Q ss_pred ccCCHHHHHHHHhhcc
Q 021615 260 TELSSEDAVKSLSTEG 275 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~ 275 (310)
++.|++++|..+....
T Consensus 148 ~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 148 NDDNVNEIFFTLAKLI 163 (170)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987654
No 10
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.86 E-value=1.9e-22 Score=168.61 Aligned_cols=159 Identities=20% Similarity=0.210 Sum_probs=111.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH-HH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL-GR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l-~~ 179 (310)
..+|+++|.+|||||||+|+|++.... +.+++++|.+.....+..+. ..+.+|||||+.+....-..+ ..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~ 75 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--------MPLHIIDTAGLREASDEVERIGIE 75 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--------EEEEEEECCCCSCCSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--------eEEEEEECCCcccchhHHHHHHHH
Confidence 357999999999999999999988754 47788888776666665432 268999999997642211111 11
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccC
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSE 259 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~ 259 (310)
..+.+++.+|++++|+|+++..+++. ..|+.++..... .+.|+++|+||+|+.+..... .+ .....+.++||+
T Consensus 76 ~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~---~~-~~~~~~~~~SA~ 148 (172)
T 2gj8_A 76 RAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLP--AKLPITVVRNKADITGETLGM---SE-VNGHALIRLSAR 148 (172)
T ss_dssp HHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSC--TTCCEEEEEECHHHHCCCCEE---EE-ETTEEEEECCTT
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcc--cCCCEEEEEECccCCcchhhh---hh-ccCCceEEEeCC
Confidence 22356789999999999998776654 345566655432 368999999999985431100 00 012345679999
Q ss_pred ccCCHHHHHHHHhhcc
Q 021615 260 TELSSEDAVKSLSTEG 275 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~ 275 (310)
++.|++++|..+....
T Consensus 149 ~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 149 TGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TCTTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999987655
No 11
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.86 E-value=4.2e-21 Score=162.69 Aligned_cols=164 Identities=15% Similarity=0.069 Sum_probs=110.4
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC------------------------------
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL------------------------------ 150 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~------------------------------ 150 (310)
..++|+++|.+|||||||+++|++........+.++.......+......
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 34689999999999999999999886432222222222222223222100
Q ss_pred -CCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEE
Q 021615 151 -GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL 229 (310)
Q Consensus 151 -~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~ 229 (310)
........+.+|||||+.+... ....+++.+|++++|+|++++.+++....|..++..+. ..|+++|+
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~piilv~ 154 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYAS-------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS----NYIIILVA 154 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTT-------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CCEEEEEE
T ss_pred ccCccceeEEEEEECCCcHHHHH-------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----CCcEEEEE
Confidence 0000003789999999876532 23455679999999999999888888888888887653 48999999
Q ss_pred eCCCCCCcHhHHHHHHHHHHhcC--CCccccCccCCHHHHHHHHhhcc
Q 021615 230 NKIDLPEARDRLQSLTEEILKIG--CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 230 NK~Dl~~~~~~~~~l~~~l~~~g--~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
||+|........+++.+.+...+ +.++||+++.|++++|..+....
T Consensus 155 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 155 NKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp ECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 99994322223445555555554 45589999999999999986544
No 12
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.86 E-value=3.8e-21 Score=158.12 Aligned_cols=158 Identities=15% Similarity=0.135 Sum_probs=107.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||+++|++.... ..+..|+.......+.... .. ..+.+|||||+.+.. .+. .
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~l~D~~G~~~~~----~~~---~ 69 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDC----QQ--CMLEILDTAGTEQFT----AMR---D 69 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEESSS----CE--EEEEEEEECSSCSST----THH---H
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEECC----EE--EEEEEEECCChHHHH----HHH---H
Confidence 57999999999999999999986532 2233333222222222221 11 268999999987653 222 3
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHH---hcCCCcccc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL---KIGCDKVTS 258 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~---~~g~~~~sa 258 (310)
.+++.+|++++|+|++++.+++....|...+..+.. ..+.|+++|+||+|+.+.... .+...+... ...+.++||
T Consensus 70 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 70 LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecC
Confidence 445689999999999988777777777777765421 147899999999999753211 222333333 334666999
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|+++++..+....
T Consensus 149 ~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 149 KSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999986643
No 13
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=162.22 Aligned_cols=160 Identities=14% Similarity=0.063 Sum_probs=113.7
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
...++|+++|.+|||||||+++|++........+.++.+.....+..... ...+.+|||||..+....
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~Dt~G~~~~~~~------ 74 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGE------KVKLQIWDTAGQERFRTI------ 74 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTE------EEEEEEEEETTGGGCSSC------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCE------EEEEEEEcCCCchhhhhh------
Confidence 34578999999999999999999988755555555555544444443221 126899999998665332
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHH--hcCCCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEIL--KIGCDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~--~~g~~~~ 256 (310)
+..++..+|++++|+|++++.+++....|..++.... .+.|+++|+||+|+.+... .......... ...+.++
T Consensus 75 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (181)
T 3tw8_B 75 -TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFET 150 (181)
T ss_dssp -CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred -HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEE
Confidence 2245678999999999999888888888888887654 3689999999999875321 1122222223 2455669
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
|++++.|++++|..+....
T Consensus 151 Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 151 SAKENVNVEEMFNCITELV 169 (181)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999987655
No 14
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.86 E-value=1.1e-21 Score=161.65 Aligned_cols=157 Identities=17% Similarity=0.136 Sum_probs=97.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..+|+++|.+|||||||+|+|++..... .+.+++|..... .+... ...+.+|||||+.++.. .
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~i~D~~g~~~~~~-------~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDGE--------EASLMVYDIWEQDGGRW-------L 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETTE--------EEEEEEEECC---------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECCE--------EEEEEEEECCCCccchh-------h
Confidence 4689999999999999999999876543 455555553221 12111 12689999999876522 2
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~s 257 (310)
...+++.+|++++|+|++++.+++....|+.++..+.. ..+.|+++|+||+|+.+..+. .+......... .+.++|
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETS 144 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECB
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEec
Confidence 22345689999999999998888888888888876532 246899999999999754321 12222222333 455699
Q ss_pred cCccCCHHHHHHHHhhcc
Q 021615 258 SETELSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~ 275 (310)
|+++.|++++|..+....
T Consensus 145 a~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 145 AALHHNVQALFEGVVRQI 162 (166)
T ss_dssp GGGTBSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
No 15
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=6.9e-22 Score=190.85 Aligned_cols=158 Identities=23% Similarity=0.270 Sum_probs=119.0
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCC-ccccCCchHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI-EGAHLGKGLG 178 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~-~~~~~~~~l~ 178 (310)
..++|+|+|.||||||||+|+|++.+. .++++++||.++....+..... .+.+|||||+. +.....+.++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--------~~~l~DTaG~~~~~~~~ve~~g 313 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--------LFRIVDTAGVRSETNDLVERLG 313 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--------EEEEEESSCCCSSCCTTCCCCC
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--------EEEEEECCCccccchhhHHHHH
Confidence 448999999999999999999999874 4699999999998888876532 79999999998 6644333222
Q ss_pred -HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-cCCCcc
Q 021615 179 -RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-IGCDKV 256 (310)
Q Consensus 179 -~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-~g~~~~ 256 (310)
...+.+++.||++++|+|++++.+.++.+. ++.+ .++|+++|+||+|+....+ .+++.+.+.. ..+..+
T Consensus 314 i~~~~~~~~~aD~vl~VvD~s~~~s~~~~~i-l~~l-------~~~piivV~NK~DL~~~~~-~~~~~~~~~~~~~~i~i 384 (482)
T 1xzp_A 314 IERTLQEIEKADIVLFVLDASSPLDEEDRKI-LERI-------KNKRYLVVINKVDVVEKIN-EEEIKNKLGTDRHMVKI 384 (482)
T ss_dssp HHHHHHHHHHCSEEEEEEETTSCCCHHHHHH-HHHH-------TTSSEEEEEEECSSCCCCC-HHHHHHHHTCSTTEEEE
T ss_pred HHHHHHHhhcccEEEEEecCCCCCCHHHHHH-HHHh-------cCCCEEEEEECcccccccC-HHHHHHHhcCCCcEEEE
Confidence 234577889999999999998877766543 3333 2689999999999975422 2333333221 245679
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||+++.|++++++.+....
T Consensus 385 SAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 385 SALKGEGLEKLEESIYRET 403 (482)
T ss_dssp EGGGTCCHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
No 16
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.86 E-value=5.6e-21 Score=159.49 Aligned_cols=161 Identities=15% Similarity=0.055 Sum_probs=111.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++........+..+.......+.... . ...+.+|||||+.+... .+
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~~-------~~ 78 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVND----A--TVKFEIWDTAGQERYHS-------LA 78 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETT----E--EEEEEEEECCCSGGGGG-------GT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECC----E--EEEEEEEeCCCChhhhh-------hh
Confidence 46899999999999999999998764432222222111112222111 1 12789999999865532 22
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~sa 258 (310)
..+++.+|++++|+|++++.+++....|..++..+.. .+.|+++|+||+|+.+..+ ..++..+.....+ +.++|+
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (181)
T 2efe_B 79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSA 156 (181)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCS
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEEC
Confidence 3456789999999999988888888888888876542 3689999999999975322 1233444444444 556899
Q ss_pred CccCCHHHHHHHHhhccCC
Q 021615 259 ETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~~~ 277 (310)
+++.|+.++|..+......
T Consensus 157 ~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 157 KTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp SSCTTHHHHHHHHHHTCC-
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999876643
No 17
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.86 E-value=1.3e-21 Score=170.14 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=108.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeecc--ceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN--LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~--~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
+||+|||.+|||||||+++++...... .+. .|.... ...+... ... -.+.||||+|+.++. .+..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~-~~~-~Tig~d~~~k~~~~~----~~~--v~l~iwDtaGqe~~~----~l~~- 80 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDN-TYQ-ATIGIDFLSKTMYLE----DRT--IRLQLWDTAGLERFR----SLIP- 80 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECS----SCE--EEEEEECCSCTTTCG----GGHH-
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCC-CcC-CccceEEEEEEEEec----ceE--EEEEEEECCCchhhh----hHHH-
Confidence 589999999999999999999765321 111 122111 1122211 111 268999999998773 3333
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV 256 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~ 256 (310)
.+++.++++++|+|.++..+++.+..|+..+..+.. .+.|+++|+||+|+.+.. +..+.+.+.+ .+.+.++
T Consensus 81 --~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~--~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~-~~~~~e~ 155 (216)
T 4dkx_A 81 --SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLADKRQVSIEEGERKAKEL-NVMFIET 155 (216)
T ss_dssp --HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHH-TCEEEEE
T ss_pred --HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC--CCCeEEEEeeccchHhcCcccHHHHhhHHHHh-CCeeEEE
Confidence 345689999999999999999999999998876643 468999999999997532 2233343333 2346679
Q ss_pred ccCccCCHHHHHHHHhhccCC
Q 021615 257 TSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~~~ 277 (310)
||+++.|++++|..++.....
T Consensus 156 SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 156 SAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp BTTTTBSHHHHHHHHHHHC--
T ss_pred eCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999877643
No 18
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.85 E-value=6.1e-21 Score=160.20 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=110.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+|+|++... ...++.|+.......+.... .. ..+.+|||||+.+... +.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~----~~--- 69 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDG----ET--CLLDILDTAGQEEYSA----MR--- 69 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETT----EE--EEEEEEECCCC---CT----TH---
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECC----cE--EEEEEEECCCcHHHHH----HH---
Confidence 35799999999999999999998763 34444555433333333221 11 1578899999876532 22
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccC
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~ 259 (310)
..++..+|++++|+|+++..+++....|...+..+... .+.|+++|+||+|+.......+........ ..+.++||+
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (189)
T 4dsu_A 70 DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAK 148 (189)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 23456899999999999988888888888887765322 368999999999997543222333333333 455669999
Q ss_pred ccCCHHHHHHHHhhccC
Q 021615 260 TELSSEDAVKSLSTEGG 276 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~~ 276 (310)
++.|+.++|..+.....
T Consensus 149 ~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIR 165 (189)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999877653
No 19
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.85 E-value=1.8e-21 Score=160.46 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=109.8
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
..+|+++|.+|||||||+|+|++..... .+..+++.......+... ...+.+|||||+.+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Dt~G~~~~~~------- 70 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNE--------LHKFLIWDTAGLERFRA------- 70 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE--------EEEEEEEEECCSGGGGG-------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCe--------EEEEEEEcCCCchhhhc-------
Confidence 4689999999999999999999886432 333333332222222111 12689999999865422
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~ 256 (310)
....+++.+|++++|+|++++.+++....|...+..+.. ...|+++|+||+|+.+..+. .+......... .+.++
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVET 148 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEE
Confidence 223456789999999999998888888888888877533 46899999999999753221 22223333333 35568
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
|++++.|+++++..+....
T Consensus 149 Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 149 SAKNAININELFIEISRRI 167 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHC
T ss_pred eCCCCcCHHHHHHHHHHHH
Confidence 9999999999999987654
No 20
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=2.9e-21 Score=165.74 Aligned_cols=162 Identities=15% Similarity=0.076 Sum_probs=111.8
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
....++|+++|.+|||||||+++|++........+.++.+.....+.... .. ..+.+|||||+.+....
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~~----- 85 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING----KK--VKLQLWDTAGQERFRTI----- 85 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETT----EE--EEEEEECCTTGGGGTCC-----
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECC----EE--EEEEEEeCCCcHHHHHH-----
Confidence 34567899999999999999999998775444444444333333333221 01 26899999998765321
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCcc
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKV 256 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~ 256 (310)
+..++..+|++++|+|++++.+++....|..++..+.. .+.|+++|+||+|+.......+...+.... +.+.++
T Consensus 86 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (213)
T 3cph_A 86 --TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIES 161 (213)
T ss_dssp --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEEC
T ss_pred --HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEE
Confidence 23556789999999999988778877788888776543 368999999999995432112222222232 456669
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
|++++.|+.++|..+....
T Consensus 162 Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 162 SAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp BTTTTBSSHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
No 21
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=2.4e-21 Score=159.56 Aligned_cols=158 Identities=15% Similarity=0.056 Sum_probs=109.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||+++|++........+..+.......+.... . ...+.+|||||+.+... .+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~D~~G~~~~~~-------~~~ 70 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE----H--TVKFEIWDTAGQERFAS-------LAP 70 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT----E--EEEEEEEEECCSGGGGG-------GHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC----E--EEEEEEEECCCChhhhh-------hhh
Confidence 5799999999999999999998764433233333222222222211 1 12689999999865422 234
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc---HhH-HHHHHHHHHh--cCCCcc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA---RDR-LQSLTEEILK--IGCDKV 256 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~---~~~-~~~l~~~l~~--~g~~~~ 256 (310)
.+++.+|++++|+|++++.+++....|..++..... .+.|+++|+||+|+... .+. .+...+.... ..+.++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFET 148 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEEC
T ss_pred hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEE
Confidence 556789999999999998888888888877776542 46899999999998643 111 1222222223 345669
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||+++.|+.++|..+....
T Consensus 149 Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 149 SAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CTTTCTTHHHHHHHHHTTS
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987655
No 22
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=3.3e-21 Score=163.46 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=114.2
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCC--CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~--i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
....+|+++|.+|||||||+++|++.... ..+..+++.......+... ...+.+|||||+.+...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~~----- 87 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE--------LHKFLIWDTAGQERFHS----- 87 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSS--------EEEEEEEEECCSGGGGG-----
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCE--------EEEEEEEcCCCchhhHh-----
Confidence 34578999999999999999999987642 2334444433222222111 12789999999866532
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CC
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CD 254 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~ 254 (310)
.+..+++.+|++++|+|+++..+++....|..++..+.. .+.|+++|+||+|+.+..+ ..++..+.....+ +.
T Consensus 88 --~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 163 (192)
T 2fg5_A 88 --LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVV 163 (192)
T ss_dssp --GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEE
T ss_pred --hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEE
Confidence 223456789999999999998888888888888877642 4689999999999964221 2334444444444 45
Q ss_pred ccccCccCCHHHHHHHHhhccC
Q 021615 255 KVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
++|++++.|+++++..+.....
T Consensus 164 ~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 164 ETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp ECBTTTTBSHHHHHHHHHHTCC
T ss_pred EEeCCCCcCHHHHHHHHHHHHH
Confidence 5899999999999999987663
No 23
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.85 E-value=7.6e-22 Score=168.22 Aligned_cols=161 Identities=19% Similarity=0.162 Sum_probs=106.4
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
......+|+++|.+|||||||+++|++.. ....+..|+.......+..+. .. ..+.+|||||+.+....
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~~---- 84 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDG----RP--VRLQLCDTAGQDEFDKL---- 84 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETT----EE--EEEEEEECCCSTTCSSS----
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECC----EE--EEEEEEECCCCHHHHHH----
Confidence 33456789999999999999999999876 234444554433333332221 11 15789999999776432
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----------------hH
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DR 240 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----------------~~ 240 (310)
+..++..+|++++|+|++++.+++... .|..++..+.+ +.|+++|+||+|+.... +.
T Consensus 85 ---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 158 (201)
T 2q3h_A 85 ---RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA 158 (201)
T ss_dssp ---GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred ---hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence 123567899999999999988888775 67777776543 78999999999997531 11
Q ss_pred HHHHHHHHHhcCCCccccCccCCHHHHHHHHhhcc
Q 021615 241 LQSLTEEILKIGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 241 ~~~l~~~l~~~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
...+.+.+....+.++||+++.|++++|..+....
T Consensus 159 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 159 AKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp HHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 22233222222456799999999999999987655
No 24
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.85 E-value=4.6e-22 Score=177.41 Aligned_cols=154 Identities=22% Similarity=0.287 Sum_probs=113.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc------CCch
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH------LGKG 176 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~------~~~~ 176 (310)
++|+++|.+|||||||+|+|++....++++|++|.+...+.+.... ..+.+|||||+.+... ..+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--------~~~~lvDtpG~~~~~~~~~~~~~~e~ 73 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--------HLIEITDLPGVYSLVANAEGISQDEQ 73 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--------EEEEEEECCCCSSCC------CHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--------eEEEEEeCCCcccccccccCCCHHHH
Confidence 6899999999999999999999987778999999888888776543 2789999999977642 1122
Q ss_pred HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH---hHHHHHHHHHHhcCC
Q 021615 177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGC 253 (310)
Q Consensus 177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~l~~~l~~~g~ 253 (310)
+.+.++. .+.+|++++|+|+++. +....+...+.. .+.|+++|+||+|+.... ...+.+.+.+ ...+
T Consensus 74 i~~~~~~-~~~~d~vi~VvDas~~---~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~v 143 (256)
T 3iby_A 74 IAAQSVI-DLEYDCIINVIDACHL---ERHLYLTSQLFE-----LGKPVVVALNMMDIAEHRGISIDTEKLESLL-GCSV 143 (256)
T ss_dssp HHHHHHH-HSCCSEEEEEEEGGGH---HHHHHHHHHHTT-----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH-CSCE
T ss_pred HHHHHHh-hCCCCEEEEEeeCCCc---hhHHHHHHHHHH-----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc-CCCE
Confidence 3333332 1689999999999873 333344455544 378999999999986432 1233444433 2455
Q ss_pred CccccCccCCHHHHHHHHhhc
Q 021615 254 DKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~ 274 (310)
.++||+++.|++++++.+...
T Consensus 144 i~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 144 IPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EECBGGGTBSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 669999999999999999776
No 25
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=165.98 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=107.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|++........+..+.+.....+.... .. ..+.+|||||+.+. ...
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~l~l~Dt~G~~~~-------~~~ 91 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG----KK--IRLQIWDTAGQERF-------NSI 91 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETT----EE--EEEEEEEECCSGGG-------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECC----eE--EEEEEEeCCCcHHH-------HHH
Confidence 346899999999999999999998764433333333333333333221 11 26899999998654 223
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHH---hcCCCcc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL---KIGCDKV 256 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~---~~g~~~~ 256 (310)
+..+++.+|++++|+|+++..++++...|...+..+.. .+.|+++|+||+|+....+. .++..+... ...+.++
T Consensus 92 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (192)
T 2il1_A 92 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEA 169 (192)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEEC
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEE
Confidence 44566789999999999998888888888888876643 46899999999999653221 122222222 2345669
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||+++.|++++|..+....
T Consensus 170 SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 170 SAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999986543
No 26
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=6.1e-21 Score=161.18 Aligned_cols=162 Identities=16% Similarity=0.050 Sum_probs=112.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++........+..+.......+.... . ...+.+|||||+.+... .+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~~-------~~ 81 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG----N--KAKLAIWDTAGQERFRT-------LT 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT----E--EEEEEEEEECSSGGGCC-------SH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECC----e--EEEEEEEeCCCchhhhh-------hh
Confidence 46899999999999999999998764433233222222222232211 1 12689999999876532 22
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC--CCccccC
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG--CDKVTSE 259 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g--~~~~sa~ 259 (310)
..+++.+|++++|+|++++.++.....|..++..+.. ..+.|+++|+||+|+.......+...+.....+ +.++|++
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAK 160 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCC
Confidence 3456789999999999988888888888888776532 236899999999999643222233344444444 4568999
Q ss_pred ccCCHHHHHHHHhhccCC
Q 021615 260 TELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~~~ 277 (310)
++.|++++|..+.....+
T Consensus 161 ~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp TCTTHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999998776543
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.85 E-value=5.3e-21 Score=157.51 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=108.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCC--CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIA--DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~--~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
..+|+++|.+|||||||+++|++...... +..+++.......+... ...+.+|||||+.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~D~~G~~~~~~------- 70 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDT--------TVKFEIWDTAGQERYHS------- 70 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE--------EEEEEEEEECCSGGGGG-------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCE--------EEEEEEEeCCCcHHhhh-------
Confidence 36799999999999999999998764321 22222222211112111 12689999999866422
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~ 256 (310)
.+..++..+|++++|+|++++.+++....|..++..+.. ...|+++|+||+|+..... ..++..+.....+ +.++
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMET 148 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEE
Confidence 234456789999999999988888888888877776532 3689999999999864321 1233333344444 4568
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||+++.|++++++.+....
T Consensus 149 Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 149 SAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CTTTCTTHHHHHHHHHHTS
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987665
No 28
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.85 E-value=6.6e-21 Score=158.43 Aligned_cols=160 Identities=17% Similarity=0.068 Sum_probs=110.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..++|+++|.+|||||||+++|++........+.++.......+.... . ...+.+|||||+.+.. . .
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~l~Dt~G~~~~~----~---~ 80 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG----Q--KIKLQIWDTAGQERFR----A---V 80 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETT----E--EEEEEEEECTTGGGTC----H---H
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC----e--EEEEEEEECCCChHhh----h---h
Confidence 347899999999999999999998764322111111111112222111 1 1268999999986542 2 3
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~s 257 (310)
+..+++.+|++++|+|+++..+++....|..++..+.. .+.|+++|+||+|+....+ ..++..+.....+ +.++|
T Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T 1z0f_A 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEAS 158 (179)
T ss_dssp HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEe
Confidence 34556789999999999998888888888888876543 3689999999999964321 1234444444444 55689
Q ss_pred cCccCCHHHHHHHHhhcc
Q 021615 258 SETELSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~ 275 (310)
|+++.|++++|..+....
T Consensus 159 a~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 159 AKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
No 29
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.85 E-value=5e-21 Score=165.77 Aligned_cols=163 Identities=20% Similarity=0.183 Sum_probs=114.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCC-C-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC----
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAK-P-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---- 174 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~-~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~---- 174 (310)
..++|+++|.+|||||||+|+|++.. . .+.+++++|.......+.... ...+.+|||||+.+.....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~l~DtpG~~~~~~~~~~~~ 100 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA-------EPVAHLVDLPGYGYAEVPGAAKA 100 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT-------SCSEEEEECCCCCSSCCCSTHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC-------CCcEEEEcCCCCCcccCChhhHH
Confidence 35789999999999999999999986 2 457888888876655554111 1279999999986542221
Q ss_pred --chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHH
Q 021615 175 --KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEIL 249 (310)
Q Consensus 175 --~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~ 249 (310)
..+...+++....+|++++|+|+++.....+ ..+...+.. .++|+++|+||+|+....+ ..+.+.+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~ 174 (223)
T 4dhe_A 101 HWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP-----TGKPIHSLLTKCDKLTRQESINALRATQKSLD 174 (223)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG-----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh-----cCCCEEEEEeccccCChhhHHHHHHHHHHHHH
Confidence 1223344444555899999999987655443 345556654 3689999999999987544 2334444444
Q ss_pred hc---------CCCccccCccCCHHHHHHHHhhccC
Q 021615 250 KI---------GCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 250 ~~---------g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
.+ .+..+||+++.|+.+++..+.....
T Consensus 175 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 175 AYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp HHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred hhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 42 3556899999999999999876653
No 30
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.85 E-value=3.6e-21 Score=159.62 Aligned_cols=160 Identities=15% Similarity=0.104 Sum_probs=101.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.++|+++|.+|||||||+++|++..... .+.++++.......+... . ..+.+|||||+.... ...+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~D~~g~~~~~--~~~~~-- 71 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGE------D--TTLVVVDTWEAEKLD--KSWSQ-- 71 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTE------E--EEEEEECCC---------CHHH--
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCE------E--EEEEEEecCCCCccc--hhhhH--
Confidence 4689999999999999999999886443 333333332222222111 1 168999999986531 11122
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~s 257 (310)
..+++.+|++++|+|++++.+++....|+.++..+.. ..+.|+++|+||+|+.+..+. .++....... ..+.++|
T Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 149 (175)
T 2nzj_A 72 -ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETS 149 (175)
T ss_dssp -HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECB
T ss_pred -HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEe
Confidence 2345679999999999998888888888888876532 236899999999999754221 1222222222 3466799
Q ss_pred cCccCCHHHHHHHHhhcc
Q 021615 258 SETELSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~ 275 (310)
|+++.|++++|..+....
T Consensus 150 a~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
No 31
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.85 E-value=4.8e-21 Score=172.29 Aligned_cols=156 Identities=20% Similarity=0.353 Sum_probs=114.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC--CchHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~--~~~l~~ 179 (310)
.++|+++|.||||||||+|+|++....++++|++|.....+.+.. . ..+.+|||||+.+.... .+.+.+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~--------~~l~l~DtpG~~~~~~~~~~e~v~~ 73 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N--------KDLEIQDLPGIYSMSPYSPEAKVAR 73 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C--------TTEEEEECCCCSCSSCSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C--------CeEEEEECCCcCccCCCChHHHHHH
Confidence 357999999999999999999998877899999999887777653 2 27999999999765321 123344
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH---hHHHHHHHHHHhcCCCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGCDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~l~~~l~~~g~~~~ 256 (310)
.++.. ..+|++++|+|+++. +....|..++.. .+.|+++|+||+|+.... ...+.+.+.+ .+.+.++
T Consensus 74 ~~~~~-~~~d~vi~V~D~t~~---e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~vi~~ 143 (272)
T 3b1v_A 74 DYLLS-QRADSILNVVDATNL---ERNLYLTTQLIE-----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL-GVPVVAT 143 (272)
T ss_dssp HHHHT-TCCSEEEEEEEGGGH---HHHHHHHHHHHH-----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEEC
T ss_pred HHHhc-CCCCEEEEEecCCch---HhHHHHHHHHHh-----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc-CCCEEEE
Confidence 44332 369999999999863 333445556654 378999999999985321 1234444433 2456669
Q ss_pred ccCccCCHHHHHHHHhhccC
Q 021615 257 TSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~~ 276 (310)
||+++.|++++|..+.....
T Consensus 144 SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 144 SALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp BTTTTBSHHHHHHHHHHSCT
T ss_pred EccCCCCHHHHHHHHHHHHh
Confidence 99999999999999877553
No 32
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.85 E-value=2.5e-21 Score=168.99 Aligned_cols=164 Identities=18% Similarity=0.252 Sum_probs=108.6
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc-hH-HH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GL-GR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~-~l-~~ 179 (310)
.++|+|+|.+|||||||+|+|++......+++++|.......+.... ..+.+|||||+.+...... .+ ..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--------NKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--------EEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--------CeEEEEECCCCcCcccchhhhHHHH
Confidence 46899999999999999999999876556778888876666554332 2789999999976432212 11 12
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHH--HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH----HHHHHHHHHh---
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVN--DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR----LQSLTEEILK--- 250 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~--~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~----~~~l~~~l~~--- 250 (310)
.+......+|++++|+|+++..+++ ....+...+.... .+.|+++|+||+|+....+. .+.+.+....
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF---SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh---cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence 2223356789999999999876543 2234555555431 37899999999999764321 1223333333
Q ss_pred -cCCCccccCccCCHHHHHHHHhhccC
Q 021615 251 -IGCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 251 -~g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
..+.++||+++.|++++|..++....
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CceEEEEecccCCCHHHHHHHHHHHHH
Confidence 34667999999999999999877653
No 33
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.85 E-value=2.1e-21 Score=160.32 Aligned_cols=161 Identities=19% Similarity=0.133 Sum_probs=102.8
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.++|+++|.+|||||||+++|++........+.+|.+.....+..+. .. ..+.+|||||+.+.... +.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~i~D~~g~~~~~~~---~~--- 69 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDK----EE--VTLIVYDIWEQGDAGGW---LQ--- 69 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETT----EE--EEEEEECCCCC--------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECC----eE--EEEEEEECCCccccchh---hh---
Confidence 36899999999999999999997764443333344433333333221 11 26889999999764220 11
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~sa 258 (310)
..+++.+|++++|+|++++.+++....|+.++...... .+.|+++|+||+|+.+..+ ..+...+..... .+.++||
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 148 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecC
Confidence 12345799999999999988888888888887765421 2689999999999974322 122333333334 4466999
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|++++|..+....
T Consensus 149 ~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 149 ALHHNTRELFEGAVRQI 165 (169)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 99999999999987644
No 34
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=3.5e-21 Score=160.61 Aligned_cols=159 Identities=19% Similarity=0.172 Sum_probs=108.0
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC-CCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~-~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
...+|+++|.+|||||||+++|++....... .+.++.......+.... .. ..+.+|||||+.+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~~~Dt~G~~~~~~------- 75 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDG----VK--VKLQMWDTAGQERFRS------- 75 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETT----EE--EEEEEEECCCC------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECC----EE--EEEEEEeCCCcHHHHH-------
Confidence 3468999999999999999999988754322 23333332222222211 11 2689999999865422
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDK 255 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~ 255 (310)
.+..+++.+|++++|+|++++.+++.+..|..++..+.. .+.|+++|+||+|+.... +....+.+.+ .+.+.+
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 152 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKREDGEKLAKEY-GLPFME 152 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH-TCCEEE
T ss_pred HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHHHHHHHHHc-CCeEEE
Confidence 234556889999999999988888888888888876543 468999999999997532 1222332222 345666
Q ss_pred cccCccCCHHHHHHHHhhcc
Q 021615 256 VTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~ 275 (310)
+||+++.|++++|..+....
T Consensus 153 ~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 153 TSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999987655
No 35
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.85 E-value=6.3e-21 Score=158.63 Aligned_cols=161 Identities=16% Similarity=0.091 Sum_probs=109.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.++|+++|.+|||||||+++|++........+.++.......+.... .. ..+.+|||||+.+. ....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~-------~~~~ 73 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG----HF--VTMQIWDTAGQERF-------RSLR 73 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETT----EE--EEEEEEECCCCGGG-------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECC----EE--EEEEEEeCCCchhh-------hhhH
Confidence 46899999999999999999998764433333333332223332221 11 16899999998654 2233
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH---hcCCCcc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDKV 256 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~---~~g~~~~ 256 (310)
..+++.+|++++|+|+++..+++....|..++..+.. ...+.|+++|+||+|+.......+...+... ...+.++
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (177)
T 1wms_A 74 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFET 153 (177)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEEC
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEE
Confidence 4557789999999999998888877778777765432 1146899999999999743222233333333 3456679
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
|++++.|++++|..+....
T Consensus 154 Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 154 SAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
No 36
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.85 E-value=4.2e-21 Score=160.04 Aligned_cols=163 Identities=15% Similarity=0.143 Sum_probs=105.5
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..++|+++|.+|||||||+++|++........+.++.+.....+.... .. ...+.+|||||+.+... .
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~l~Dt~G~~~~~~-------~ 74 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG---DK--VATMQVWDTAGQERFQS-------L 74 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSS---SC--CEEEEEECCC---------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcC---Cc--EEEEEEEECCCChHhhh-------h
Confidence 346899999999999999999998764433333333333333343221 01 12689999999765422 2
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcH-----hHHHHHHHHHHhcCC
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEAR-----DRLQSLTEEILKIGC 253 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~-----~~~~~l~~~l~~~g~ 253 (310)
+..+++.+|++++|+|++++.+++....|..++..+.. ...+.|+++|+||+|+.... +....+.+......+
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 75 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp --CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeE
Confidence 33456789999999999998888888778777765431 12468999999999996432 222333322223456
Q ss_pred CccccCccCCHHHHHHHHhhcc
Q 021615 254 DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.++|++++.|++++|..+....
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 6799999999999999987654
No 37
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.85 E-value=6.5e-21 Score=163.18 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=110.8
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
.....++|+++|.+|||||||+++|++........+..+.+.....+.... .. ..+.+|||||+.+.
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~------- 91 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQG----KR--VKLQIWDTAGQERF------- 91 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETT----EE--EEEEEECCTTCGGG-------
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECC----EE--EEEEEEECCCcHhH-------
Confidence 345568899999999999999999998764322111111222222232221 11 27899999998654
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcCC---
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIGC--- 253 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g~--- 253 (310)
...+..+++.+|++++|+|+++..+++....|..++..+.. .+.|+++|+||+|+..... ..++..+.....++
T Consensus 92 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 169 (201)
T 2hup_A 92 RTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCA 169 (201)
T ss_dssp HHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEE
Confidence 22344567799999999999988888888888888876542 4689999999999975311 12334444455554
Q ss_pred CccccCccCCHHHHHHHHhhcc
Q 021615 254 DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.++||+++.|++++|..+....
T Consensus 170 ~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 170 IETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 5699999999999999987655
No 38
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.85 E-value=2.8e-21 Score=186.40 Aligned_cols=165 Identities=20% Similarity=0.189 Sum_probs=96.8
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
++...+|+++|.||||||||+|+|++.+.. ++++++||.+.....+..... .+.+|||||+.+....-..+
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--------~l~liDT~G~~~~~~~ve~~ 301 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--------MFRLTDTAGLREAGEEIEHE 301 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--------EEEEEC--------------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--------EEEEEECCCCCcchhHHHHH
Confidence 456678999999999999999999998654 588999999887777765432 79999999997653321211
Q ss_pred H-HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-HHHHHHHHhcCCCc
Q 021615 178 G-RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKIGCDK 255 (310)
Q Consensus 178 ~-~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~l~~~l~~~g~~~ 255 (310)
+ +....+++.+|++++|+|++++.+.++...+...+... .++|+++|+||+|+....... +.+.+. ....+..
T Consensus 302 gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~~~~~~~~~l~~~-~~~~~i~ 376 (476)
T 3gee_A 302 GIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRAANADALIRAIADG-TGTEVIG 376 (476)
T ss_dssp ------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCTTTHHHHHHHHHH-HTSCEEE
T ss_pred HHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCCccchhHHHHHhc-CCCceEE
Confidence 1 22345678999999999999987775444444444443 268999999999998754321 112221 1145667
Q ss_pred cccCccCCHHHHHHHHhhccC
Q 021615 256 VTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+||+++.|++++++.+.....
T Consensus 377 vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 377 ISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp CBTTTTBSHHHHHHHHTHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHh
Confidence 999999999999999876553
No 39
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.85 E-value=5.2e-21 Score=159.27 Aligned_cols=152 Identities=21% Similarity=0.239 Sum_probs=108.2
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..++|+++|.+|||||||+++|++........+.+|.......+.... ..+.+|||||+.+.....
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~------ 72 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--------KKITFLDTPGHEAFTTMR------ 72 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--------EEEEESCCCSSSSSSCSC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--------ceEEEEECCCCHHHHHHH------
Confidence 457899999999999999999999876555566666555444444332 268999999997764321
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh----------
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---------- 250 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~---------- 250 (310)
..++..+|++++|+|+++....+.++.+ ..+.. .+.|+++|+||+|+.... .+.+...+..
T Consensus 73 -~~~~~~~d~~i~v~d~~~~~~~~~~~~l-~~~~~-----~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 143 (178)
T 2lkc_A 73 -ARGAQVTDIVILVVAADDGVMPQTVEAI-NHAKA-----ANVPIIVAINKMDKPEAN--PDRVMQELMEYNLVPEEWGG 143 (178)
T ss_dssp -CSSCCCCCEEEEEEETTCCCCHHHHHHH-HHHGG-----GSCCEEEEEETTTSSCSC--HHHHHHHHTTTTCCBTTTTS
T ss_pred -HHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHh-----CCCCEEEEEECccCCcCC--HHHHHHHHHhcCcChhHcCC
Confidence 2446789999999999886655555443 33332 368999999999998642 1223333322
Q ss_pred -cCCCccccCccCCHHHHHHHHhhcc
Q 021615 251 -IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 251 -~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
..+.++||+++.|++++|+.+....
T Consensus 144 ~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 144 DTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cccEEEEecCCCCCHHHHHHHHHHhh
Confidence 2355699999999999999987654
No 40
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.85 E-value=6.7e-21 Score=159.87 Aligned_cols=160 Identities=15% Similarity=0.040 Sum_probs=114.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|++........+.++.......+.... .. ..+.+|||||+.+. ...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~-------~~~ 75 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG----KY--VKLQIWDTAGQERF-------RSV 75 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETT----EE--EEEEEEEECCSGGG-------HHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC----EE--EEEEEEeCCCcHHH-------HHH
Confidence 457899999999999999999998875554444444444333333221 11 26899999998654 223
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~s 257 (310)
+..+++.+|++++|+|++++.+++....|..++..+.. .+.|+++|+||+|+....+ ...+..+.....+ +.++|
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETS 153 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEec
Confidence 45567899999999999998888888888887776543 4689999999999964321 1233333334444 55699
Q ss_pred cCccCCHHHHHHHHhhcc
Q 021615 258 SETELSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~ 275 (310)
|+++.|+.++|..+....
T Consensus 154 a~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 154 ALTGENVEEAFVQCARKI 171 (186)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987655
No 41
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.84 E-value=8.3e-21 Score=162.51 Aligned_cols=161 Identities=16% Similarity=0.101 Sum_probs=114.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..++|+|+|.+|||||||+++|++........+..+.......+.... .. ..+.+|||||+.+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~~------- 73 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDG----KT--VKLQIWDTAGQERFRTI------- 73 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETT----EE--EEEEEECCTTTTTTTCC-------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC----EE--EEEEEEeCCChHHHHHH-------
Confidence 356899999999999999999998875444344444333333333221 11 16899999998765332
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~s 257 (310)
+..+++.+|++++|+|++++.+++....|..++..+.. .+.|+++|+||+|+..... ..+...+..... .+.++|
T Consensus 74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (206)
T 2bcg_Y 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETS 151 (206)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECC
T ss_pred HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEe
Confidence 23456789999999999998888888888888876643 3689999999999976322 122233333333 455699
Q ss_pred cCccCCHHHHHHHHhhccC
Q 021615 258 SETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~~ 276 (310)
|+++.|++++|..+.....
T Consensus 152 a~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 152 ALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999876553
No 42
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.84 E-value=6.8e-21 Score=161.63 Aligned_cols=153 Identities=24% Similarity=0.251 Sum_probs=109.0
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++..... + .+|..+....+..+. ..+.+|||||+.+.... +
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~--~-~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~~-------~ 84 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLAT--L-QPTWHPTSEELAIGN--------IKFTTFDLGGHIQARRL-------W 84 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCC--C-CCCCSCEEEEEEETT--------EEEEEEECCCSGGGTTS-------G
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCc--c-ccCCCCCeEEEEECC--------EEEEEEECCCCHHHHHH-------H
Confidence 4589999999999999999999876432 1 234444444554432 27899999999765321 2
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-----------
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK----------- 250 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~----------- 250 (310)
..+++.+|++++|+|++++.+++....+..++.... ...+.|+++|+||+|+.... ..+++.+.+..
T Consensus 85 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 1m2o_B 85 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNAV-SEAELRSALGLLNTTGSQRIEG 162 (190)
T ss_dssp GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCC-CHHHHHHHTTCSSCCC---CCS
T ss_pred HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcCCC-CHHHHHHHhCCccccccccccc
Confidence 244678999999999999888888777777665431 12468999999999997632 23444444432
Q ss_pred ---cCCCccccCccCCHHHHHHHHhhc
Q 021615 251 ---IGCDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 251 ---~g~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
..+.++||+++.|++++|+.++..
T Consensus 163 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 163 QRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 125568999999999999998653
No 43
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=6e-21 Score=182.79 Aligned_cols=157 Identities=22% Similarity=0.272 Sum_probs=106.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc--CCchHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGR 179 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~--~~~~l~~ 179 (310)
++|++||.||||||||+|+|++.+.. +.++|++|.+...+.+.... ..+.+|||||+..... ....+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~~~~~ 73 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--------KTFKLVDTCGVFDNPQDIISQKMKE 73 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--------EEEEEEECTTTTSSGGGCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--------eEEEEEECCCccccccchHHHHHHH
Confidence 68999999999999999999998865 48999999988887776543 2789999999976421 2344566
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC---Ccc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---DKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~---~~~ 256 (310)
.+..+++.||++++|+|+.++.+..+. .+.+.+.. .++|+++|+||+|+.... .......+..+++ ..+
T Consensus 74 ~~~~~~~~ad~il~V~D~~~~~~~~d~-~i~~~l~~-----~~~p~ilv~NK~D~~~~~--~~~~~~~~~~lg~~~~~~i 145 (439)
T 1mky_A 74 VTLNMIREADLVLFVVDGKRGITKEDE-SLADFLRK-----STVDTILVANKAENLREF--EREVKPELYSLGFGEPIPV 145 (439)
T ss_dssp HHHHHHTTCSEEEEEEETTTCCCHHHH-HHHHHHHH-----HTCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEEC
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCCEEEEEeCCCCcccc--HHHHHHHHHhcCCCCEEEE
Confidence 677788999999999999876655442 33344543 368999999999985321 1222122334544 458
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||+++.|+.++++.+....
T Consensus 146 SA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 146 SAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred eccCCCCHHHHHHHHHHhc
Confidence 9999999999999986654
No 44
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=7.5e-21 Score=156.89 Aligned_cols=160 Identities=13% Similarity=0.112 Sum_probs=105.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||+|+|++........+... ......+.... .. ..+.+|||||+.+.. ....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~----~~--~~~~~~Dt~G~~~~~-------~~~~ 69 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDK----SI--CTLQITDTTGSHQFP-------AMQR 69 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC-EEEEEEEEETT----EE--EEEEEEECCSCSSCH-------HHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc-ccEEEEEEECC----EE--EEEEEEECCCchhhH-------HHHH
Confidence 5799999999999999999998764322111111 11111111111 11 268999999987652 2333
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~sa~ 259 (310)
.++..+|++++|+|++++.+++....++..+..+.....+.|+++|+||+|+.+..+. .......... ..+.++|++
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 149 (172)
T 2erx_A 70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAK 149 (172)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCC
Confidence 4567899999999999877777777777777765433347899999999998653221 1122222222 345669999
Q ss_pred ccCCHHHHHHHHhhccC
Q 021615 260 TELSSEDAVKSLSTEGG 276 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~~ 276 (310)
++.|++++++.+.....
T Consensus 150 ~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 150 LNHNVKELFQELLNLEK 166 (172)
T ss_dssp TTBSHHHHHHHHHHTCC
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999877553
No 45
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.84 E-value=7.3e-21 Score=177.80 Aligned_cols=162 Identities=21% Similarity=0.273 Sum_probs=107.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH---
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG--- 178 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~--- 178 (310)
.+.|+++|++|||||||+|+|++....+.+++++|+++..+.+..... .+.+|||||++.... ..+.
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--------~v~l~DT~G~i~~lp--~~lve~f 248 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--------KIMLVDTVGFIRGIP--PQIVDAF 248 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--------EEEEEECCCBCSSCC--GGGHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--------EEEEEeCCCchhcCC--HHHHHHH
Confidence 445999999999999999999999876688999999998888875432 689999999865321 2222
Q ss_pred HHHHHHhhhcCEEEEecccCCCC--cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-H-HHHHHHHHHhc---
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAEN--PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-R-LQSLTEEILKI--- 251 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~--~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~-~~~l~~~l~~~--- 251 (310)
+..+.++..+|++++|+|++++. ..+....+.+.+..+.. .+.|+++|+||+|+.+... . ...+......+
T Consensus 249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~ 326 (364)
T 2qtf_A 249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGV--SGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSP 326 (364)
T ss_dssp HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC--CSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc--CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence 33455678899999999998765 44555555555655432 4689999999999976421 1 11221111222
Q ss_pred --CCCccccCccCCHHHHHHHHhhcc
Q 021615 252 --GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 252 --g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+..+|++++.|++++++.+....
T Consensus 327 ~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 327 IFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 346699999999999999886543
No 46
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.84 E-value=1.2e-21 Score=163.26 Aligned_cols=164 Identities=15% Similarity=0.089 Sum_probs=107.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++........+.++.+.....+..... . ...+.+|||||+.++.. + +
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---~--~~~~~~~Dt~G~~~~~~----~---~ 73 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGN---L--NVTLQIWDIGGQTIGGK----M---L 73 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTT---E--EEEEEEEECTTCCTTCT----T---H
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCC---C--EEEEEEEECCCCccccc----h---h
Confidence 367999999999999999999987532111111112222223332210 0 12789999999876532 2 2
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT 257 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~s 257 (310)
..+++.+|++++|+|++++.+++....|..++..+.......| +++|+||+|+.+... ..+...+.... +.+.++|
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (178)
T 2hxs_A 74 DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVS 153 (178)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEEC
T ss_pred hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEe
Confidence 3456789999999999998888888788887776432112456 789999999965321 11222222233 3456699
Q ss_pred cCccCCHHHHHHHHhhccCC
Q 021615 258 SETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~~~ 277 (310)
|+++.|+.++|..+......
T Consensus 154 a~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 154 AKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp TTTCTTHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999998776533
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.84 E-value=5.1e-21 Score=159.09 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=111.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||+++|++........+.++.+.....+.... .. ..+.+|||||+.+... .+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~Dt~G~~~~~~-------~~~ 81 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED----RT--VRLQLWDTAGQERFRS-------LIP 81 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETT----EE--EEEEEEEECCSGGGGG-------GSH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECC----eE--EEEEEEECCCcHHHHH-------HHH
Confidence 6799999999999999999998765444444444444333343221 11 2689999999866532 223
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~sa~ 259 (310)
.++..+|++++|+|++++.+++....|..++..+.. .+.|+++|+||+|+.+..+ ..++....... ..+.++|++
T Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (179)
T 2y8e_A 82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 159 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTT
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCC
Confidence 456789999999999987777777777777765432 3689999999999864321 12223333333 345669999
Q ss_pred ccCCHHHHHHHHhhcc
Q 021615 260 TELSSEDAVKSLSTEG 275 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~ 275 (310)
++.|+++++..+....
T Consensus 160 ~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 160 AGYNVKQLFRRVAAAL 175 (179)
T ss_dssp TTBSHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987655
No 48
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.84 E-value=1e-20 Score=161.67 Aligned_cols=163 Identities=19% Similarity=0.173 Sum_probs=113.2
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..++|+++|.+|||||||+++|++........+.++.+.....+.... .. ..+.+|||||+.+.....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~~~------ 74 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDD----RL--VTMQIWDTAGQERFQSLG------ 74 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSS----CE--EEEEEEEECSSGGGSCSC------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECC----EE--EEEEEEeCCCcHHHHHhH------
Confidence 346899999999999999999998875443344444443334443321 11 268999999987653321
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH---hcCCCc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDK 255 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~---~~g~~~ 255 (310)
..+++.+|++++|+|++++.+++....|..++..+.. ...+.|+++|+||+|+.......+....... ...+.+
T Consensus 75 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (207)
T 1vg8_A 75 -VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFE 153 (207)
T ss_dssp -CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEE
T ss_pred -HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEE
Confidence 2446789999999999988878777777777665421 1136899999999999743222233333332 345567
Q ss_pred cccCccCCHHHHHHHHhhccC
Q 021615 256 VTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+||+++.|++++|..+.....
T Consensus 154 ~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 154 TSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999877653
No 49
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=4.1e-21 Score=164.83 Aligned_cols=161 Identities=17% Similarity=0.100 Sum_probs=112.8
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
...++|+++|.+|||||||+++|++........+..+.+.....+..+. .. ..+.+|||||+.+. ..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~l~l~Dt~G~~~~-------~~ 90 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING----EK--VKLQIWDTAGQERF-------RS 90 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETT----EE--EEEEEEEECCSGGG-------HH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC----EE--EEEEEEECCCcHHH-------HH
Confidence 4457899999999999999999998765443333333333333333221 11 26899999998554 22
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHH--hcCCCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~--~~g~~~~ 256 (310)
.+..+++.+|++++|+|+++..+++.+..|..++..+.. .+.|+++|+||+|+.+..+. .++..+... ...+.++
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLET 168 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEE
Confidence 344567899999999999998888888888888877643 46899999999999643211 122222222 3445679
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||+++.|++++|..+....
T Consensus 169 Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 169 SAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987655
No 50
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.84 E-value=6.9e-21 Score=158.85 Aligned_cols=153 Identities=11% Similarity=0.114 Sum_probs=104.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||+++|++..... +..|+.......+..+. .. ..+.+|||||+.+ .
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~------------~ 67 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDG----QT--HLVLIREEAGAPD------------A 67 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETT----EE--EEEEEEECSSSCC------------H
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECC----EE--EEEEEEECCCCch------------h
Confidence 579999999999999999999876432 22222111122222211 11 2689999999864 1
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCC------cHhHHHHHHHHHHhcCCCc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPE------ARDRLQSLTEEILKIGCDK 255 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~------~~~~~~~l~~~l~~~g~~~ 255 (310)
.+++.+|++++|+|++++.+++....|.+.+..... ...+.|+++|+||+|+.. ..+....+...+....+.+
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2iwr_A 68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYE 147 (178)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEE
T ss_pred HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEE
Confidence 345689999999999998888888877655554321 114689999999999842 1122333333332345677
Q ss_pred cccCccCCHHHHHHHHhhcc
Q 021615 256 VTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~ 275 (310)
+||+++.|++++|..+....
T Consensus 148 ~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 148 TXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EBTTTTBTHHHHHHHHHHHH
T ss_pred EeccccCCHHHHHHHHHHHH
Confidence 99999999999999987655
No 51
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.84 E-value=6.2e-21 Score=161.54 Aligned_cols=160 Identities=16% Similarity=0.085 Sum_probs=109.7
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|++........+..+.......+..+. .. ..+.+|||||+.+....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~~------- 86 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDG----KQ--IKLQIWDTAGQESFRSI------- 86 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETT----EE--EEEEEECCTTGGGTSCC-------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC----EE--EEEEEEECCCchhhhhh-------
Confidence 457899999999999999999998775443333333222222332221 11 26899999998765332
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~s 257 (310)
+..+++.+|++++|+|+++..+++....|..++..+.. .+.|+++|+||+|+..... ..++..+.... +.+.++|
T Consensus 87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 164 (191)
T 2a5j_A 87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETS 164 (191)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEe
Confidence 23456789999999999998888888888888876543 4689999999999964321 12222333333 3455699
Q ss_pred cCccCCHHHHHHHHhhcc
Q 021615 258 SETELSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~ 275 (310)
|+++.|++++|..+....
T Consensus 165 a~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 165 AKTACNVEEAFINTAKEI 182 (191)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987655
No 52
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.84 E-value=9e-21 Score=160.13 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=110.3
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
...++|+++|.+|||||||+++|++........+..+.......+.... . ...+.+|||||+.+....
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~l~Dt~G~~~~~~~------ 87 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHD----K--RIKLQIWDTAGQERYRTI------ 87 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETT----E--EEEEEEEECCSCCSSCCS------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECC----e--EEEEEEEeCCCcHHHhhh------
Confidence 3457899999999999999999998764332222222111112222111 1 127899999998765332
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~ 256 (310)
+..++..+|++++|+|+++..+++....|..++..+.. .+.|+++|+||+|+..... ..+...+.... +.+.++
T Consensus 88 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (189)
T 2gf9_A 88 -TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW--DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEA 164 (189)
T ss_dssp -GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEC
T ss_pred -HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 23456789999999999988888888888888877642 4689999999999975321 12223333333 345669
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
|++++.|++++|..+....
T Consensus 165 Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 165 SAKENINVKQVFERLVDVI 183 (189)
T ss_dssp BTTTTBSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
No 53
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.84 E-value=7.1e-21 Score=160.88 Aligned_cols=159 Identities=14% Similarity=0.137 Sum_probs=110.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|++.......+ .+|.......+.... ..+.+|||||+.+... .
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~-------~ 83 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI-LPTIGFSIEKFKSSS--------LSFTVFDMSGQGRYRN-------L 83 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC-CCCSSEEEEEEECSS--------CEEEEEEECCSTTTGG-------G
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCc-CCccceeEEEEEECC--------EEEEEEECCCCHHHHH-------H
Confidence 45789999999999999999999876333222 234334444444432 2799999999876532 2
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCcHhHHHHHHHHHH--h-----cC
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEARDRLQSLTEEIL--K-----IG 252 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~--~-----~g 252 (310)
+..+++.+|++++|+|+++..+++....++.++...... ..+.|+++|+||+|+..... .+++.+.+. . ..
T Consensus 84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 162 (190)
T 2h57_A 84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT-SVKVSQLLCLENIKDKPWH 162 (190)
T ss_dssp GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCEE
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC-HHHHHHHhChhhccCCceE
Confidence 234567899999999999877777776676666553210 03689999999999976422 334444442 1 23
Q ss_pred CCccccCccCCHHHHHHHHhhccC
Q 021615 253 CDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+.++||+++.|++++|+.+.....
T Consensus 163 ~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 163 ICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEEccCCCCcCHHHHHHHHHHHHH
Confidence 556999999999999999877653
No 54
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.84 E-value=1.5e-20 Score=154.27 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=107.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||+++|++... ...+..|+.......+.... .. ..+.+|||||+.+.. ..+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~~~l~D~~G~~~~~-------~~~~ 70 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG----EE--VQIDILDTAGQEDYA-------AIRD 70 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETT----EE--EEEEEEECCC---CH-------HHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECC----EE--EEEEEEECCCcchhH-------HHHH
Confidence 5799999999999999999998763 23344444333322232221 11 168999999986542 2334
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~sa~ 259 (310)
.++..+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+.+..+ ..++..+..... .+.++|++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (168)
T 1u8z_A 71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAK 149 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCC
Confidence 456789999999999988888877777777766532 13689999999999965321 123333344433 45669999
Q ss_pred ccCCHHHHHHHHhhcc
Q 021615 260 TELSSEDAVKSLSTEG 275 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~ 275 (310)
++.|++++|+.+....
T Consensus 150 ~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 150 TRANVDKVFFDLMREI 165 (168)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999986643
No 55
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.84 E-value=3.5e-21 Score=158.95 Aligned_cols=159 Identities=18% Similarity=0.097 Sum_probs=106.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++........+..+.......+..+. .. ..+.+|||||+.+... ..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~-------~~ 72 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGG----KR--VNLAIWDTAGQERFHA-------LG 72 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSS----CE--EEEEEEECCCC--------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECC----EE--EEEEEEECCCcHhhhh-------hH
Confidence 46899999999999999999998764433333333332223333221 11 2689999999865422 12
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~sa 258 (310)
..+++.+|++++|+|+++..+++....|..++..+.. .+.|+++|+||+|+.+... ..++..+.....+ +.++||
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 150 (170)
T 1z08_A 73 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSA 150 (170)
T ss_dssp CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecC
Confidence 2346789999999999988888888777777765432 3689999999999975321 1233333334444 456899
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|++++|+.+....
T Consensus 151 ~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 151 KQNKGIEELFLDLCKRM 167 (170)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987654
No 56
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.84 E-value=2.8e-20 Score=152.77 Aligned_cols=153 Identities=20% Similarity=0.191 Sum_probs=107.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||+++|++.... ... +|.......+.... ..+.+|||||+.+. ...+.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~-------~~~~~ 62 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKN--------ISFTVWDVGGQDKI-------RPLWR 62 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CCC--CCSSCCEEEEECSS--------CEEEEEECCCCGGG-------HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-ccc--CcCceeEEEEEECC--------EEEEEEEcCCChhh-------HHHHH
Confidence 47999999999999999999876532 112 23333333444322 27999999998654 22344
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cCCCc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGCDK 255 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g~~~ 255 (310)
.+++.+|++++|+|++++.+++....++..+.... ...+.|+++|+||+|+.+... .+++.+.+.. ..+.+
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYIQA 140 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCeEEEEEECcCCcCCCC-HHHHHHHhCcccccCccEEEEE
Confidence 56789999999999998887877776666654321 123689999999999976522 2333333321 12456
Q ss_pred cccCccCCHHHHHHHHhhcc
Q 021615 256 VTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~ 275 (310)
+||+++.|++++|+.+....
T Consensus 141 ~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 141 TCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp CBTTTTBTHHHHHHHHHHHC
T ss_pred cccCCCcCHHHHHHHHHHHH
Confidence 99999999999999987655
No 57
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.84 E-value=6.5e-21 Score=162.90 Aligned_cols=153 Identities=22% Similarity=0.224 Sum_probs=104.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++.+... + .+|..+....+..+. ..+.+|||||+.+... .+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~--~-~~t~~~~~~~~~~~~--------~~l~i~Dt~G~~~~~~-------~~ 86 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQ--H-VPTLHPTSEELTIAG--------MTFTTFDLGGHIQARR-------VW 86 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETT--------EEEEEEEECC----CC-------GG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCc--c-CCCCCceeEEEEECC--------EEEEEEECCCcHhhHH-------HH
Confidence 3579999999999999999999876321 1 124444445554432 2789999999876532 12
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-----------
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK----------- 250 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~----------- 250 (310)
..+++.+|++++|+|++++.+++....+..++.... ...+.|+++|+||+|+.... ..+++.+.+..
T Consensus 87 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T 1f6b_A 87 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAI-SEERLREMFGLYGQTTGKGSVS 164 (198)
T ss_dssp GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCC-CHHHHHHHHTCTTTCCCSSCCC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccC-CHHHHHHHhCcccccccccccc
Confidence 245678999999999999888888777777665431 12478999999999997632 23444444431
Q ss_pred --------cCCCccccCccCCHHHHHHHHhhc
Q 021615 251 --------IGCDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 251 --------~g~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
..+.++||+++.|++++|..+...
T Consensus 165 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 165 LKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 134558999999999999998754
No 58
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.84 E-value=4.8e-21 Score=162.19 Aligned_cols=162 Identities=18% Similarity=0.075 Sum_probs=110.1
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
....++|+|+|.+|||||||+++|++........+..+.......+.... . ...+.+|||||+.+... +
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~~----~- 90 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT----A--AVKAQIWDTAGLERYRA----I- 90 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETT----E--EEEEEEEEESCCCTTCT----T-
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC----E--EEEEEEEeCCCchhhhh----h-
Confidence 34567899999999999999999998764432222211111111221111 1 12689999999976532 2
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCc
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDK 255 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~ 255 (310)
+..+++.+|++++|+|++++.+++....|+.++..+.. .+.|+++|+||+|+..... ..+.........+ +.+
T Consensus 91 --~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 166 (193)
T 2oil_A 91 --TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLE 166 (193)
T ss_dssp --HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE
T ss_pred --hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEE
Confidence 23456789999999999988777777778877776432 4689999999999975321 1233333333444 556
Q ss_pred cccCccCCHHHHHHHHhhcc
Q 021615 256 VTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~ 275 (310)
+||+++.|+.++|..+....
T Consensus 167 ~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 167 TSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp ECTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999986654
No 59
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.84 E-value=1.2e-20 Score=160.99 Aligned_cols=160 Identities=12% Similarity=0.084 Sum_probs=110.3
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..++|+++|.+|||||||+++|++........+..+.......+.... . ...+.+|||||+.+. ...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~l~Dt~G~~~~-------~~~ 73 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND----K--RIKLQIWDTAGLERY-------RTI 73 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETT----E--EEEEEEEEECCSGGG-------HHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECC----e--EEEEEEEECCCchhh-------cch
Confidence 356899999999999999999998764332222222211122222111 1 127899999998654 223
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~s 257 (310)
+..+++.+|++++|+|++++.+++....|..++..+.. .+.|+++|+||+|+..... ..+...+.... +.+.++|
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEAS 151 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECB
T ss_pred HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEE
Confidence 45567899999999999998888888888888877642 3689999999999976321 12222222233 3455699
Q ss_pred cCccCCHHHHHHHHhhcc
Q 021615 258 SETELSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~ 275 (310)
|+++.|++++|..+....
T Consensus 152 a~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVI 169 (203)
T ss_dssp TTTTBSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987654
No 60
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.84 E-value=1.1e-20 Score=159.48 Aligned_cols=162 Identities=17% Similarity=0.037 Sum_probs=108.6
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|++........+..+.+.....+.... .. ..+.+|||||+.+... ..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~------~~ 86 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG----ER--IKIQLWDTAGQERFRK------SM 86 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT----EE--EEEEEEECCCSHHHHT------TT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECC----EE--EEEEEEECCCchhhhh------hh
Confidence 457899999999999999999998764433333333222222332221 11 2689999999854420 12
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~s 257 (310)
+..+++.+|++++|+|+++..+++.+..|..++..+.. ..+.|+++|+||+|+.+..+. .+...+..... .+.++|
T Consensus 87 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 165 (189)
T 1z06_A 87 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETS 165 (189)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECC
T ss_pred hHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEe
Confidence 33456789999999999998888888778888776532 236899999999999653221 22222223333 455699
Q ss_pred cCcc---CCHHHHHHHHhhcc
Q 021615 258 SETE---LSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~~~---~gi~~l~~~l~~~~ 275 (310)
++++ .|+.++|..++...
T Consensus 166 a~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 166 AKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp SSSGGGGSCHHHHHHHHC---
T ss_pred CCcCCcccCHHHHHHHHHHHH
Confidence 9999 99999999986654
No 61
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=9.1e-21 Score=159.83 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=107.3
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
+...+|+++|.+|||||||+++|++.+... + ..|.......+.... ..+.+|||||+.+...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~-~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~------- 75 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH--T-SPTIGSNVEEIVINN--------TRFLMWDIGGQESLRS------- 75 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEE--E-ECCSCSSCEEEEETT--------EEEEEEECCC----CG-------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc--C-cCCCccceEEEEECC--------EEEEEEECCCCHhHHH-------
Confidence 345789999999999999999999765321 1 112222233333321 2789999999976532
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-----c--C
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-----I--G 252 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-----~--g 252 (310)
.+..+++.+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+.+... .+++.+.+.. . .
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~ 153 (187)
T 1zj6_A 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQWH 153 (187)
T ss_dssp GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCEE
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhhcCCCcE
Confidence 12345678999999999999888888877777776531 114689999999999976422 2334433321 1 3
Q ss_pred CCccccCccCCHHHHHHHHhhccCC
Q 021615 253 CDKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
+.++||+++.|++++++.+......
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 154 IQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred EEEccCCCCcCHHHHHHHHHHHHHH
Confidence 4569999999999999998776533
No 62
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=160.77 Aligned_cols=161 Identities=18% Similarity=0.158 Sum_probs=113.5
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..++|+|+|.+|||||||+++|++... ...+..|+.......+.... .. ..+.+|||||+.+.. . .
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~----~---~ 78 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG----EE--VQIDILDTAGQEDYA----A---I 78 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETT----EE--EEEEEEECCCTTCCH----H---H
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECC----EE--EEEEEEcCCChhhhH----H---H
Confidence 346899999999999999999998763 34455554433333333221 11 168999999986652 2 2
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~s 257 (310)
+..++..+|++++|+|+++..+++....|...+..+.. ..+.|+++|+||+|+.+..+ ..++..+..... .+.++|
T Consensus 79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (206)
T 2bov_A 79 RDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS 157 (206)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEe
Confidence 33456689999999999998888888888887776542 13689999999999975321 123333344433 456699
Q ss_pred cCccCCHHHHHHHHhhccC
Q 021615 258 SETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~~ 276 (310)
++++.|++++|..+.....
T Consensus 158 a~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 158 AKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999877654
No 63
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.84 E-value=8.1e-21 Score=161.09 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=107.4
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..++|+|+|.+|||||||+++|++.......+.. |.......+.... ..+.+|||||+.+... .
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~-------~ 79 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKGR--------VAFTVFDMGGAKKFRG-------L 79 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEETT--------EEEEEEEECCSGGGGG-------G
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeCC--------EEEEEEECCCCHhHHH-------H
Confidence 3467999999999999999999988744422222 2222233333221 2799999999976532 2
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcC------CCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN------PDYLERPFIVVLNKIDLPEARDRLQSLTEEIL----- 249 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~------~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~----- 249 (310)
+..+++.+|++++|+|+++..+++....++..+.... +...+.|+++|+||+|+..... .+++.+.+.
T Consensus 80 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~ 158 (199)
T 4bas_A 80 WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-AAELVEILDLTTLM 158 (199)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-HHHHHHHHTHHHHH
T ss_pred HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-HHHHHHHhcchhhc
Confidence 2345678999999999999888888777766665421 1112789999999999986522 222322221
Q ss_pred ---hcCCCccccCccCCHHHHHHHHhhccC
Q 021615 250 ---KIGCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 250 ---~~g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
...+.++||+++.|++++|+.+.....
T Consensus 159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 159 GDHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp TTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred cCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 123556999999999999999877553
No 64
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.84 E-value=1.1e-20 Score=156.03 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=107.5
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
+..++|+++|.+|||||||+++|++..... . ..|.......+.... ..+.+|||||+.+...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~--------~~~~~~Dt~G~~~~~~------- 66 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-T--IPTIGFNVETVTYKN--------LKFQVWDLGGLTSIRP------- 66 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-C--CCCSSEEEEEEEETT--------EEEEEEEECCCGGGGG-------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-c--CCcCccceEEEEECC--------EEEEEEECCCChhhhH-------
Confidence 445789999999999999999999775321 1 122222223333321 2789999999866432
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cC
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IG 252 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g 252 (310)
.+..+++.+|++++|+|++++.++.....++..+.... ...+.|+++|+||+|+.+..+ .+++.+.+.. +.
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 144 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKWQ 144 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCEE
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhCCCEEEEEEECCCCcCCCC-HHHHHHHhCchhccCCceE
Confidence 22345678999999999999888877766666554321 124789999999999986522 2333333321 13
Q ss_pred CCccccCccCCHHHHHHHHhhcc
Q 021615 253 CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+.++|++++.|++++++.+....
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 145 IFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEECcCCCCcCHHHHHHHHHHHH
Confidence 55699999999999999987654
No 65
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.84 E-value=5.3e-21 Score=157.38 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=108.0
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++........+..+.+.....+.... . ...+.+|||||+.+.... .
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~~~l~Dt~G~~~~~~~-------~ 71 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND----E--DVRLMLWDTAGQEEFDAI-------T 71 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETT----E--EEEEEEECCTTGGGTTCC-------C
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECC----E--EEEEEEEcCCCcHhHHHH-------H
Confidence 46799999999999999999998764332222222222222232211 1 126899999998765321 2
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--CCCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--GCDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g~~~~sa 258 (310)
..+++.+|++++|+|++++.+++....|..++..+. .+.|+++|+||+|+.+..+ ..++..+..... .+.++|+
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T 1z2a_A 72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSV 148 (168)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEec
Confidence 345668999999999998877777777777776543 3689999999999875321 122333333333 4556999
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|+++++..+....
T Consensus 149 ~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 149 KEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp TTTBSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999986543
No 66
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.84 E-value=6.1e-21 Score=158.93 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=108.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.++|+++|.+|||||||+++|++... ...+..|+.......+..+. . ...+.+|||||+.+... +.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~--~~~~~~~Dt~G~~~~~~----~~--- 74 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDG----I--PARLDILDTAGQEEFGA----MR--- 74 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETT----E--EEEEEEEECCCTTTTSC----CH---
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECC----E--EEEEEEEECCCchhhHH----HH---
Confidence 36799999999999999999998742 23444444433333333221 1 12689999999876532 22
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~sa 258 (310)
..++..+|++++|+|+++..++.....|..++..... ..+.|+++|+||+|+....+. .+......... .+.++|+
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 153 (181)
T 2fn4_A 75 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASA 153 (181)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecC
Confidence 2345689999999999988777777777777633211 246899999999999753221 12222222333 4556999
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|++++|+.+....
T Consensus 154 ~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987655
No 67
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.84 E-value=1.6e-20 Score=158.02 Aligned_cols=151 Identities=21% Similarity=0.232 Sum_probs=105.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccce----EeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG----RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~----~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
.++|+++|.+|||||||+++|++.... ...|+.+ .+.... ..+.+|||||+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~-------~~~~t~g~~~~~~~~~~--------~~l~i~Dt~G~~~~------- 73 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDIS-------HITPTQGFNIKSVQSQG--------FKLNVWDIGGQRKI------- 73 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCE-------EEEEETTEEEEEEEETT--------EEEEEEECSSCGGG-------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-------cccCcCCeEEEEEEECC--------EEEEEEECCCCHHH-------
Confidence 468999999999999999999987421 1122222 232221 27899999998654
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK------- 250 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~------- 250 (310)
...+..++..+|++++|+|+++..+++....++.++.... ...+.|+++|+||+|+..... .+++.+.+..
T Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~ 151 (181)
T 1fzq_A 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE-KLSCVPVLIFANKQDLLTAAP-ASEIAEGLNLHTIRDRV 151 (181)
T ss_dssp HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCG-GGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSC
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcCcccCCC-HHHHHHHhCchhccCCc
Confidence 2344566789999999999998888877766666553311 124689999999999986532 2334333321
Q ss_pred cCCCccccCccCCHHHHHHHHhhccC
Q 021615 251 IGCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 251 ~g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
..+.++||+++.|++++|..+.....
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 152 WQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred eEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 23556899999999999999877653
No 68
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.84 E-value=1.8e-21 Score=163.21 Aligned_cols=160 Identities=14% Similarity=0.119 Sum_probs=86.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|++........+.++.+.....+..+. .. ..+.+|||||+.+... .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~-------~ 73 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG----KR--IKLQIWDTAGQERFRT-------I 73 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETT----EE--EEEEEEEC----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECC----EE--EEEEEEcCCCChhhhh-------h
Confidence 356899999999999999999997653322222223222222332221 11 2689999999865432 1
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~s 257 (310)
+..+++.+|++++|+|++++.+++....|..++..+.. .+.|+++|+||+|+.+... ..+...+.... +.+.++|
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 151 (183)
T 2fu5_C 74 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETS 151 (183)
T ss_dssp CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEe
Confidence 22446789999999999998888888888888876532 3689999999999975321 12222333333 3456699
Q ss_pred cCccCCHHHHHHHHhhcc
Q 021615 258 SETELSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~ 275 (310)
|+++.|++++|..+....
T Consensus 152 a~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 152 AKANINVENAFFTLARDI 169 (183)
T ss_dssp C---CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987655
No 69
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.9e-20 Score=158.57 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=109.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++... ...+..|+.......+.... .. ..+.+|||||+.++... .
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~~~i~D~~G~~~~~~~-------~ 83 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGG----KQ--YLLGLYDTAGQEDYDRL-------R 83 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSS----CE--EEEEEECCCCSSSSTTT-------G
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECC----EE--EEEEEEECCCCcchhHH-------H
Confidence 46899999999999999999998752 23344444333222333221 11 26899999999766332 2
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------------HHHHHHH
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------------LQSLTEE 247 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~l~~~ 247 (310)
..+++.+|++++|+|++++.+++... .|..++..+. .+.|+++|+||+|+....+. .++..+.
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (194)
T 2atx_A 84 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL 160 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH
T ss_pred HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH
Confidence 24567899999999999887777775 6777787754 27899999999999764211 1222222
Q ss_pred HHhc---CCCccccCccCCHHHHHHHHhhcc
Q 021615 248 ILKI---GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 248 l~~~---g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.... .+.++||+++.|++++|..+....
T Consensus 161 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 161 AKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2222 566799999999999999986643
No 70
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.84 E-value=2.1e-21 Score=174.72 Aligned_cols=157 Identities=23% Similarity=0.351 Sum_probs=114.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC--chHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~--~~l~~~ 180 (310)
++|+++|.+|||||||+|+|++....+++++++|.+...+.+..... .+.+|||||+.+..... ..+...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--------~~~liDtpG~~~~~~~~~~~~~~e~ 75 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--------QVTLVDLPGTYSLTTISSQTSLDEQ 75 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--------EEEEEECCCCSCSCC----CCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--------ceEEEECcCCCccccccccCCHHHH
Confidence 57999999999999999999999876789999999888887775432 78999999998764211 122222
Q ss_pred HHHH---hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCC
Q 021615 181 FLRH---LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCD 254 (310)
Q Consensus 181 ~~~~---l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~ 254 (310)
+.+. .+.+|++++|+|+++. +....+...+... +.|+++|+||+|+..... ..+.+.+.+ .+.+.
T Consensus 76 i~~~~~~~~~~d~ii~VvD~~~~---~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l-g~~~i 146 (274)
T 3i8s_A 76 IACHYILSGDADLLINVVDASNL---ERNLYLTLQLLEL-----GIPCIVALNMLDIAEKQNIRIEIDALSARL-GCPVI 146 (274)
T ss_dssp HHHHHHHHTCCSEEEEEEEGGGH---HHHHHHHHHHHHH-----TCCEEEEEECHHHHHHTTEEECHHHHHHHH-TSCEE
T ss_pred HHHHHHhhcCCCEEEEEecCCCh---HHHHHHHHHHHhc-----CCCEEEEEECccchhhhhHHHHHHHHHHhc-CCCEE
Confidence 2222 3689999999999863 3334444555543 689999999999864321 234444333 24566
Q ss_pred ccccCccCCHHHHHHHHhhccC
Q 021615 255 KVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
++||+++.|+++++..+.....
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHh
Confidence 6999999999999999977654
No 71
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.83 E-value=2.5e-20 Score=156.87 Aligned_cols=167 Identities=16% Similarity=0.050 Sum_probs=111.0
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeecc-ceEeeCCCCCCCc---cCCCceEEEeCCCCCccccCCch
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAE---KYSSEATLADLPGLIEGAHLGKG 176 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~-~~~v~~~~~~~~~---~~~~~~~i~DtPG~~~~~~~~~~ 176 (310)
...+|+++|.+|||||||+++|++........+..+.... ...+......... .....+.+|||||+.+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------ 83 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF------ 83 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG------
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH------
Confidence 3468999999999999999999987643322222222111 1222222110000 00127899999998543
Q ss_pred HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCC
Q 021615 177 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGC 253 (310)
Q Consensus 177 l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~ 253 (310)
...+..+++.+|++++|+|++++.+++.+..|..++..+.. ..+.|+++|+||+|+..... ..+...+.... +.+
T Consensus 84 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (195)
T 3bc1_A 84 -RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPY 161 (195)
T ss_dssp -HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCE
T ss_pred -HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCE
Confidence 33455677899999999999998888887788887776532 13689999999999975321 12223333333 456
Q ss_pred CccccCccCCHHHHHHHHhhcc
Q 021615 254 DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.++|++++.|++++|..+....
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6699999999999999987655
No 72
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.83 E-value=2.2e-20 Score=157.86 Aligned_cols=159 Identities=21% Similarity=0.235 Sum_probs=109.5
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
.+...+|+|+|.+|||||||+++|++........ .|.......+.... ..+.+|||||+.+...
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~------ 82 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMI--PTVGFNMRKITKGN--------VTIKLWDIGGQPRFRS------ 82 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEETT--------EEEEEEEECCSHHHHT------
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccC--CCCceeEEEEEeCC--------EEEEEEECCCCHhHHH------
Confidence 3456789999999999999999999876432211 22222222333221 2789999999865421
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------c
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------I 251 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~ 251 (310)
.+..+++.+|++++|+|+++..+++....++..+.... ...+.|+++|+||+|+....+ .+++.+.+.. .
T Consensus 83 -~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 159 (188)
T 1zd9_A 83 -MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-QLQGIPVLVLGNKRDLPGALD-EKELIEKMNLSAIQDREI 159 (188)
T ss_dssp -THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCE
T ss_pred -HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCCEEEEEECCCCccCCC-HHHHHHHhChhhhccCCe
Confidence 23455678999999999998888887776766665421 124789999999999986422 2333333321 1
Q ss_pred CCCccccCccCCHHHHHHHHhhccC
Q 021615 252 GCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 252 g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
.+.++||+++.|++++|..+.....
T Consensus 160 ~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 160 CCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456999999999999999877653
No 73
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.83 E-value=8e-21 Score=162.02 Aligned_cols=162 Identities=19% Similarity=0.138 Sum_probs=111.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..++|+++|.+|||||||+++|++........+.++.+.....+..+. .. ..+.+|||||+.... ..+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~l~i~Dt~g~~~~~---~~~~~- 91 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDK----EE--VTLVVYDIWEQGDAG---GWLRD- 91 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETT----EE--EEEEEECCCCCSGGG---HHHHH-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECC----EE--EEEEEEecCCCccch---hhhHH-
Confidence 346899999999999999999986554444444454443333333221 11 268899999986541 11222
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~~~s 257 (310)
.+++.+|++++|+|+++..+++.+..|+.++..+... .+.|+++|+||+|+..... ..++..+.... +.+.++|
T Consensus 92 --~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S 168 (195)
T 3cbq_A 92 --HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETS 168 (195)
T ss_dssp --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred --HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEc
Confidence 3356899999999999988888888888888765321 3689999999999975321 12222233333 3456699
Q ss_pred cCccCCHHHHHHHHhhcc
Q 021615 258 SETELSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~ 275 (310)
|+++.|++++|..+....
T Consensus 169 a~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQI 186 (195)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987655
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.83 E-value=4e-20 Score=151.19 Aligned_cols=158 Identities=18% Similarity=0.141 Sum_probs=107.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||+++|++.... ..+..++.......+.... .. ..+.+|||||+.+.. .+ ..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~----~~--~~~~~~D~~G~~~~~----~~---~~ 69 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDG----ET--CLLDILDTAGQEEYS----AM---RD 69 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETT----EE--EEEEEEECCCCSSCC----HH---HH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECC----EE--EEEEEEECCCchhhh----HH---HH
Confidence 57999999999999999999987532 2233333222222222211 11 158999999987642 22 23
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccCc
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSET 260 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~~ 260 (310)
.++..+|++++|+|+++..+++....|..++..+... .+.|+++|+||+|+.......+...+.... ..+.++|+++
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (166)
T 2ce2_X 70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKT 148 (166)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTT
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCC
Confidence 4556899999999999887777777777777665321 368999999999987632222333333333 3456689999
Q ss_pred cCCHHHHHHHHhhcc
Q 021615 261 ELSSEDAVKSLSTEG 275 (310)
Q Consensus 261 ~~gi~~l~~~l~~~~ 275 (310)
+.|+.+++..+....
T Consensus 149 ~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 149 RQGVEDAFYTLVREI 163 (166)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999986643
No 75
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.83 E-value=2.1e-20 Score=156.35 Aligned_cols=161 Identities=14% Similarity=0.099 Sum_probs=110.3
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.++|+++|.+|||||||+++|++... ...+..|+.......+.... .. ..+.+|||||+.++....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~~~------- 71 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNG----QE--YHLQLVDTAGQDEYSIFP------- 71 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETT----EE--EEEEEEECCCCCTTCCCC-------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECC----EE--EEEEEEeCCCchhhhHHH-------
Confidence 46899999999999999999997652 33444444333333333221 11 267999999998763321
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~sa 258 (310)
..+++.+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+..... ..++..+.....+ +.++||
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 150 (181)
T 3t5g_A 72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSA 150 (181)
T ss_dssp GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEec
Confidence 2345689999999999998888888888877765432 13689999999999964322 1233333344444 556999
Q ss_pred CccCCHHHHHHHHhhccCC
Q 021615 259 ETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~~~ 277 (310)
+++.|+.++|..+......
T Consensus 151 ~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 151 KENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp TSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999998776533
No 76
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.83 E-value=2.9e-20 Score=155.58 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=111.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++... ...+..|+.......+.... .. ..+.+|||||+.+.. ..+
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~-------~~~ 83 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG----EE--VQIDILDTAGQEDYA-------AIR 83 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETT----EE--EEEEEEECCCTTCCH-------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECC----EE--EEEEEEECCCCcccH-------HHH
Confidence 46799999999999999999998763 23444444433333232221 11 168999999986542 233
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~sa 258 (310)
..++..+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+.+..+ ..++..+.....+ +.++|+
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 162 (187)
T 2a9k_A 84 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 162 (187)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCC
Confidence 4456789999999999988877777777777766532 13689999999999865321 2334444445444 456899
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|++++|..+....
T Consensus 163 ~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 163 KTRANVDKVFFDLMREI 179 (187)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987654
No 77
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.83 E-value=1.8e-20 Score=158.32 Aligned_cols=153 Identities=16% Similarity=0.113 Sum_probs=106.3
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++........+ |.......+.... .. ..+.+|||||+.++.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~---------- 81 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDG----QS--YLLLIRDEGGPPELQ---------- 81 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETT----EE--EEEEEEECSSSCCHH----------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECC----EE--EEEEEEECCCChhhh----------
Confidence 46899999999999999999998764321111 2211112222221 11 267889999986541
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc------HhHHHHHHHHHHhcCCCc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------RDRLQSLTEEILKIGCDK 255 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------~~~~~~l~~~l~~~g~~~ 255 (310)
+++.+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+... .+....+.+.+....+.+
T Consensus 82 --~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e 158 (184)
T 3ihw_A 82 --FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYE 158 (184)
T ss_dssp --HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEE
T ss_pred --eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEE
Confidence 45689999999999998888888888888876531 136899999999998421 122333333332344667
Q ss_pred cccCccCCHHHHHHHHhhcc
Q 021615 256 VTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~ 275 (310)
+||+++.|++++|..+....
T Consensus 159 ~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 159 TCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EBTTTTBTHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999987654
No 78
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=159.36 Aligned_cols=159 Identities=16% Similarity=0.076 Sum_probs=104.4
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
+...+|+++|.+|||||||+++|++..... .+..+++.. ...+..+. . ...+.+|||||+.+..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~----~--~~~l~i~Dt~G~~~~~------ 91 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQ--MKTLIVDG----E--RTVLQLWDTAGQERFR------ 91 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CE--EEEEEETT----E--EEEEEEEECTTCTTCH------
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeE--EEEEEECC----E--EEEEEEEECCCCcchh------
Confidence 445789999999999999999999876332 222222221 12222111 1 1268999999986542
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc------Hh-HHHHHHHHHHh
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA------RD-RLQSLTEEILK 250 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~------~~-~~~~l~~~l~~ 250 (310)
..+..+++.+|++++|+|+++..+++....|...+..+.. .+.|+++|+||+|+.+. .. ..+...+....
T Consensus 92 -~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~ 168 (199)
T 2p5s_A 92 -SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMT 168 (199)
T ss_dssp -HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred -hhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccccccccCHHHHHHHHHH
Confidence 2344556789999999999988888888888888876542 36899999999998621 11 01122222223
Q ss_pred --cCCCccccCccCCHHHHHHHHhhcc
Q 021615 251 --IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 251 --~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
..+.++||+++.|+.++|..+....
T Consensus 169 ~~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 169 YGALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp HTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3455699999999999999987654
No 79
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.6e-20 Score=157.99 Aligned_cols=161 Identities=12% Similarity=0.101 Sum_probs=107.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeecc-ceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~-~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..+|+++|.+|||||||+++|++........+ |.... ...+..+. . ...+.+|||||+.+.. ..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~----~--~~~~~l~Dt~G~~~~~-------~~ 72 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP--TIEDTYRQVISCDK----S--VCTLQITDTTGSHQFP-------AM 72 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC--CCCEEEEEEEEETT----E--EEEEEEEECCGGGSCH-------HH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcccC--ccccceeEEEEECC----E--EEEEEEEeCCChHHhH-------HH
Confidence 46899999999999999999998754321111 11111 11111111 1 1268999999986542 22
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc--CCCcccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI--GCDKVTS 258 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~--g~~~~sa 258 (310)
+..++..+|++++|+|++++.+++....++..+..+.....+.|+++|+||+|+.......+......... .+.++||
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (199)
T 2gf0_A 73 QRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSA 152 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEec
Confidence 33456789999999999987777777777766665433234689999999999975322222333333333 4566999
Q ss_pred CccCCHHHHHHHHhhccCC
Q 021615 259 ETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~~~ 277 (310)
+++.|++++|..+......
T Consensus 153 ~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 153 KMNYNVKELFQELLTLETR 171 (199)
T ss_dssp TTTBSHHHHHHHHHHHCSS
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999876644
No 80
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.83 E-value=1.1e-20 Score=160.17 Aligned_cols=160 Identities=15% Similarity=0.080 Sum_probs=109.9
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
+...+|+++|.+|||||||+++|++.... ..+..|+.......+.... .. ..+.+|||||+.+...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~------- 86 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIP-TAYVPTVFENFSHVMKYKN----EE--FILHLWDTAGQEEYDR------- 86 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEETT----EE--EEEEEEEECCSGGGTT-------
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCC-CccCCeeeeeeEEEEEECC----EE--EEEEEEECCCcHHHHH-------
Confidence 34578999999999999999999987632 2333333222222222211 11 1579999999876532
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc---HhHHHHHHHHHHhcC---
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEA---RDRLQSLTEEILKIG--- 252 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~---~~~~~~l~~~l~~~g--- 252 (310)
....+++.+|++++|+|++++.+++.. ..|...+..+. .+.|+++|+||+|+... ....+...+.....+
T Consensus 87 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (194)
T 3reg_A 87 LRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVA 163 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSC
T ss_pred HhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCE
Confidence 123456789999999999998888775 66777777654 36899999999998742 111233333334344
Q ss_pred CCccccCccCCHHHHHHHHhhccC
Q 021615 253 CDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+.++||+++.|++++|..+.....
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 164 YIEASSVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHHH
Confidence 557999999999999999877653
No 81
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.83 E-value=6.6e-20 Score=154.60 Aligned_cols=158 Identities=23% Similarity=0.267 Sum_probs=108.7
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC------
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL------ 173 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~------ 173 (310)
..++|+++|.+|||||||+|+|++..... .+.+++|......... .++.+|||||+......
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~i~Dt~G~~~~~~~~~~~~~ 90 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVN-----------SKYYFVDLPGYGYAKVSKKERML 90 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEET-----------TTEEEEECCCBSSSCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEEC-----------CcEEEEECCCCccccCChhhHHH
Confidence 35689999999999999999999987433 6667777654443331 26899999997543211
Q ss_pred CchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHh
Q 021615 174 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILK 250 (310)
Q Consensus 174 ~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~ 250 (310)
...+...+++....+|++++|+|+++....... .+...+.. .+.|+++|+||+|+.+..+ ..+.+.+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 91 WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKS-----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK 164 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence 012223344444566999999999876554443 34445554 2689999999999986533 22344444444
Q ss_pred ---cCCCccccCccCCHHHHHHHHhhcc
Q 021615 251 ---IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 251 ---~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
..+.++||+++.|++++|+.+....
T Consensus 165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 165 YGEYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp SCCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHh
Confidence 2456699999999999999987654
No 82
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.83 E-value=9e-21 Score=162.99 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=111.3
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++.... ..+..|+.......+..+. .. ..+.+|||||+.++... .
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~~-------~ 74 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDG----QI--VNLGLWDTAGQEDYSRL-------R 74 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCEEEEEECSS----CE--EEEEEECCCCCCCCCC---------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeEEEEEEECC----EE--EEEEEEECCCcHHHHHH-------H
Confidence 468999999999999999999987632 3333343332222333221 11 27899999999776432 1
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---------HHHHHHHHHHhc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARD---------RLQSLTEEILKI 251 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---------~~~~l~~~l~~~ 251 (310)
..+++.+|++++|+|++++.+++... .|..++..+.+ +.|+++|+||+|+..... ..++..+....+
T Consensus 75 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (212)
T 2j0v_A 75 PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI 151 (212)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc
Confidence 23567899999999999888887775 68888877643 789999999999976432 122333333333
Q ss_pred ---CCCccccCccCCHHHHHHHHhhccCC
Q 021615 252 ---GCDKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 252 ---g~~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
.+.++||+++.|++++|..+......
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 152 GAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CCceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 45669999999999999998776644
No 83
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.83 E-value=2.5e-21 Score=167.17 Aligned_cols=163 Identities=14% Similarity=0.075 Sum_probs=107.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i--~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
...+|+++|.+|||||||+|+|++..... .....++... ..+.... .. ...+.+|||||+.+.... .
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~---~~--~~~~~l~Dt~G~~~~~~~----~ 78 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHP--VTFLDDQ---GN--VIKFNVWDTAGQEKKAVL----K 78 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEE--EEEEBTT---SC--EEEEEEEEECSGGGTSCC----C
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEE--EEEEeCC---Cc--EEEEEEEecCCchhhchH----H
Confidence 34689999999999999999999776332 1111122111 1111110 00 026899999998765332 1
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-HHHHHHHHhcC--CCc
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-QSLTEEILKIG--CDK 255 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~l~~~l~~~g--~~~ 255 (310)
..++..+|++++|+|+++..++++...|..++..+.. .+.|+++|+||+|+....+.. +.........+ +.+
T Consensus 79 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (218)
T 4djt_A 79 ---DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFE 153 (218)
T ss_dssp ---HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEE
T ss_pred ---HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEE
Confidence 2345689999999999998888888888888776543 358999999999997653222 22222333333 555
Q ss_pred cccCccCCHHHHHHHHhhccCCcc
Q 021615 256 VTSETELSSEDAVKSLSTEGGEAD 279 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~~~~~ 279 (310)
+||+++.|++++|..+........
T Consensus 154 ~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 154 ISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp EBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred EecCCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999987664433
No 84
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.6e-21 Score=163.86 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=109.9
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCC--CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA--DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~--~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
...++|+|+|.+|||||||+++|++...... +..+++.......+... ...+.+|||||+.+.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~~------- 85 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK--------RVKLQIWDTAGQERY------- 85 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTT--------TEEEEEECHHHHHHC-------
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCE--------EEEEEEEeCCChHHH-------
Confidence 4567899999999999999999998763221 11112221111111111 126899999997544
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh--cCCC
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK--IGCD 254 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~--~g~~ 254 (310)
......+++.+|++++|+|+++..+++....|..++..+.. .+.|+++|+||+|+..... ..+........ +.+.
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 163 (191)
T 3dz8_A 86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFF 163 (191)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEE
Confidence 22344567799999999999998888888888888887643 4689999999999864321 11222222232 3456
Q ss_pred ccccCccCCHHHHHHHHhhcc
Q 021615 255 KVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~ 275 (310)
++|++++.|+.++|..+....
T Consensus 164 ~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 164 EASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999987654
No 85
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.83 E-value=9.8e-21 Score=158.92 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=105.6
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|++.+... ...|.......+.... ..+.+|||||+.+... .
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~-------~ 81 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVH---TSPTIGSNVEEIVINN--------TRFLMWDIGGQESLRS-------S 81 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEE---EECCSSSSCEEEEETT--------EEEEEEEESSSGGGTC-------G
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCc---cCCcCceeeEEEEECC--------EEEEEEECCCCHhHHH-------H
Confidence 35689999999999999999999876411 0111112222333221 2789999999976532 2
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-----hc--CC
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-----KI--GC 253 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-----~~--g~ 253 (310)
+..+++.+|++++|+|+++..+++....++..+.... ...+.|+++|+||+|+..... .+++.+.+. .. .+
T Consensus 82 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 159 (181)
T 2h17_A 82 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQWHI 159 (181)
T ss_dssp GGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCcccCCC-HHHHHHHhCcccccCCceEE
Confidence 2345678999999999999888888777766665421 124789999999999976422 233333332 11 34
Q ss_pred CccccCccCCHHHHHHHHhhc
Q 021615 254 DKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~ 274 (310)
.++||+++.|++++|+.+...
T Consensus 160 ~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 160 QACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EECBTTTTBTHHHHHHHHHTC
T ss_pred EEccCCCCcCHHHHHHHHHhh
Confidence 569999999999999998653
No 86
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.83 E-value=6.4e-21 Score=159.29 Aligned_cols=158 Identities=17% Similarity=0.127 Sum_probs=102.4
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|+|||||+++|++.... ..+..|+.......+.. .... ..+.+|||||+.+....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~----~~~~--~~~~i~Dt~G~~~~~~~------- 72 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVV----NGAT--VNLGLWDTAGQEDYNRL------- 72 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------------CEEECCCC-CTTTTT-------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEE----CCEE--EEEEEEECCCChhhhhh-------
Confidence 3478999999999999999999987532 23333332211111111 1111 26789999998765321
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-----------HHHHHHHH
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-----------LQSLTEEI 248 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-----------~~~l~~~l 248 (310)
...+++.+|++++|+|++++.+++... .|..++..+.. +.|+++|+||+|+.+.... .++..+..
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~ 149 (182)
T 3bwd_D 73 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELK 149 (182)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHH
T ss_pred HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHH
Confidence 224567899999999999888887776 67788877642 7899999999998764331 12222222
Q ss_pred Hhc---CCCccccCccCCHHHHHHHHhhcc
Q 021615 249 LKI---GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 249 ~~~---g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
... .+.++||+++.|++++|+.+....
T Consensus 150 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 150 KLIGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 333 456699999999999999987654
No 87
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.83 E-value=1.9e-20 Score=153.50 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=106.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
.+|+++|.+|||||||+++|++..... .+..++.......+.... . ...+.+|||||+.+.. . ...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~----~--~~~~~l~D~~G~~~~~----~---~~~ 69 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDS----S--PSVLEILDTAGTEQFA----S---MRD 69 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETT----E--EEEEEEEECCCTTCCH----H---HHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECC----E--EEEEEEEECCCchhhH----H---HHH
Confidence 579999999999999999999876332 222332222222222221 1 1258999999986542 2 233
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCccccC
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~sa~ 259 (310)
.+++.+|++++|+|++++.+++....+..++..+.. ..+.|+++|+||+|+....+. .+...+.... ..+.++|++
T Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (167)
T 1kao_A 70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAK 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTT
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCC
Confidence 456789999999999988787777777777765432 136899999999998643221 1222222232 345668999
Q ss_pred ccCCHHHHHHHHhhcc
Q 021615 260 TELSSEDAVKSLSTEG 275 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~ 275 (310)
++.|++++++.+....
T Consensus 149 ~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 149 SKTMVDELFAEIVRQM 164 (167)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999986543
No 88
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.83 E-value=4.5e-20 Score=154.58 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=107.6
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+|+|++.... ..+..++.......+.... .. ..+.+|||||+.+... +.
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~----~~--- 83 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSYLKHTEIDN----QW--AILDVLDTAGQEEFSA----MR--- 83 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETT----EE--EEEEEEECCSCGGGCS----SH---
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceeEEEEEeCC----cE--EEEEEEECCCchhhHH----HH---
Confidence 468999999999999999999976432 2333333322222222221 11 1577899999876532 22
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKVT 257 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~s 257 (310)
..+++.+|++++|+|++++.+++....|...+..+.. ..+.|+++|+||+|+.+.. +....+.+.+. ..+.++|
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~S 161 (183)
T 3kkq_A 84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRDQGKEMATKYN-IPYIETS 161 (183)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-CCEEEEB
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC-CeEEEec
Confidence 3445689999999999998888888778777755321 2468999999999987532 22333333332 4566699
Q ss_pred cC-ccCCHHHHHHHHhhcc
Q 021615 258 SE-TELSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~-~~~gi~~l~~~l~~~~ 275 (310)
++ ++.|++++|..+....
T Consensus 162 a~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 162 AKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp CSSSCBSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 99 9999999999986543
No 89
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.83 E-value=1.2e-21 Score=185.05 Aligned_cols=166 Identities=34% Similarity=0.559 Sum_probs=97.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCC-----CCCC-----------CccCCCceEEEeCCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-----PTLG-----------AEKYSSEATLADLPG 166 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~-----~~~~-----------~~~~~~~~~i~DtPG 166 (310)
.+|+++|.||||||||+|+|++....++++||||..++.+.+... ..+. ...-..++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 379999999999999999999998666899999999998864321 0000 000012689999999
Q ss_pred CCccccCCchHHHHHHHHhhhcCEEEEecccCCC-----------CcHHHHHHHHHHHHhcC------------------
Q 021615 167 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE-----------NPVNDYRTVKEELRMYN------------------ 217 (310)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~-----------~~~~~~~~~~~~l~~~~------------------ 217 (310)
+.++++..++++..|+.+++.||++++|+|+++. ++.++++.+..||..++
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~ 160 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQ 160 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSS
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Confidence 9988777778888888889999999999999886 67777766666665430
Q ss_pred ------------------------------C-------------------CCCCCCEEEEEeCCCCCCcHhHHHHHHHHH
Q 021615 218 ------------------------------P-------------------DYLERPFIVVLNKIDLPEARDRLQSLTEEI 248 (310)
Q Consensus 218 ------------------------------~-------------------~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l 248 (310)
. ....+|+++|+||+|+. ..+..+.+.+.+
T Consensus 161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~~~~l~~l~~~~ 239 (397)
T 1wxq_A 161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA-SDEQIKRLVREE 239 (397)
T ss_dssp CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-CHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-chHHHHHHHHHH
Confidence 0 00248999999999988 444456666655
Q ss_pred Hhc--CCCccccCccCCHHHHHH
Q 021615 249 LKI--GCDKVTSETELSSEDAVK 269 (310)
Q Consensus 249 ~~~--g~~~~sa~~~~gi~~l~~ 269 (310)
... .+..+||+.+.++.++++
T Consensus 240 ~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 240 EKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HHTTCEEEEECHHHHHHHHSCSS
T ss_pred hhcCCcEEEEeccchhhHHHHHh
Confidence 532 355689998888776544
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.83 E-value=1e-20 Score=159.11 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=108.1
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
+...+|+++|.+|||||||+++|++.. ...+. .|.......+.... ..+.+|||||+.+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~--------~~~~~~Dt~G~~~~~~------- 77 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGFNIKTLEHRG--------FKLNIWDVGGQKSLRS------- 77 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSEEEEEEEETT--------EEEEEEEECCSHHHHT-------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCccceEEEEECC--------EEEEEEECCCCHhHHH-------
Confidence 345789999999999999999999876 22221 12222233333321 2789999999865422
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------hcC
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------KIG 252 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~~g 252 (310)
.+..+++.+|++++|+|++++.+++....++.++.... ...+.|+++|+||+|+.+... .+++.+.+. ...
T Consensus 78 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 155 (186)
T 1ksh_A 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE-RLAGATLLIFANKQDLPGALS-CNAIQEALELDSIRSHHWR 155 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEE
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh-hcCCCcEEEEEeCccCCCCCC-HHHHHHHhChhhccCCceE
Confidence 22345678999999999999888887777766665431 124689999999999976532 234444332 123
Q ss_pred CCccccCccCCHHHHHHHHhhcc
Q 021615 253 CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+.++||+++.|++++++.+....
T Consensus 156 ~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 156 IQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 55699999999999999987655
No 91
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.83 E-value=4.1e-20 Score=155.91 Aligned_cols=159 Identities=20% Similarity=0.147 Sum_probs=105.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++.... ..+..|+.......+.... .. ..+.+|||||+.+... ..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~-------~~ 86 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDG----ET--CLLDILDTAGQEEYSA-------MR 86 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETT----EE--EEEEEEECCC---------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc-cccCCccceEEEEEEEECC----EE--EEEEEEECCChHHHHH-------HH
Confidence 368999999999999999999987532 3344444332222332221 11 1589999999865422 23
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCCccccC
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCDKVTSE 259 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~~~sa~ 259 (310)
..+++.+|++++|+|+++..++++...|..++..+.. ..+.|+++|+||+|+.......++..+.... +.+.++|++
T Consensus 87 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 165 (190)
T 3con_A 87 DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAK 165 (190)
T ss_dssp ---CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCC
Confidence 3556789999999999988888888778777776532 1368999999999987532222333333333 345669999
Q ss_pred ccCCHHHHHHHHhhcc
Q 021615 260 TELSSEDAVKSLSTEG 275 (310)
Q Consensus 260 ~~~gi~~l~~~l~~~~ 275 (310)
++.|+.+++..+....
T Consensus 166 ~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 166 TRQGVEDAFYTLVREI 181 (190)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987655
No 92
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=161.21 Aligned_cols=165 Identities=15% Similarity=0.059 Sum_probs=109.9
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
..+..++|+++|.+|||||||+|+|++..... .+..|+.......+.... .. ..+.+|||||+.+....
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~~---- 88 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSE-GYDPTVENTYSKIVTLGK----DE--FHLHLVDTAGQDEYSIL---- 88 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCS-CCCCCSEEEEEEEEC--------C--EEEEEEEECCCCTTCCC----
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEECC----EE--EEEEEEECCCccchHHH----
Confidence 33456789999999999999999999876442 333333322222222211 11 26899999998766432
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCC
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCD 254 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~ 254 (310)
...+++.+|++++|+|+++..+++.+..|...+..+.. ..+.|+++|+||+|+...... .......... ..+.
T Consensus 89 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 164 (201)
T 3oes_A 89 ---PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFM 164 (201)
T ss_dssp ---CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEE
T ss_pred ---HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEE
Confidence 22456789999999999998888888888888876432 236899999999998743221 1222222222 3456
Q ss_pred ccccCccCCHHHHHHHHhhccCC
Q 021615 255 KVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
++||+++.|++++|..+.....+
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh
Confidence 69999999999999998776533
No 93
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.83 E-value=8.5e-21 Score=169.39 Aligned_cols=156 Identities=22% Similarity=0.289 Sum_probs=113.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC--chHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~--~~l~~ 179 (310)
.++|+++|.+|||||||+|+|++....++++|++|.....+.+.... ..+.+|||||+.+..... +.+.+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--------~~~~l~DtpG~~~~~~~~~~e~v~~ 76 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--------YTINLIDLPGTYSLGYSSIDEKIAR 76 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--------EEEEEEECCCCSSCCSSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--------eEEEEEECCCcCccCCCCHHHHHHH
Confidence 36799999999999999999999887778899999888777776432 279999999997654321 22334
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~~~ 256 (310)
.++.. ..+|++++|+|+++... ...+..++.. .+.|+++|+||+|+..... ..+.+.+.+ .+.+.++
T Consensus 77 ~~~~~-~~~d~ii~V~D~t~~~~---~~~~~~~l~~-----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l-g~~vi~~ 146 (258)
T 3a1s_A 77 DYLLK-GDADLVILVADSVNPEQ---SLYLLLEILE-----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVFT 146 (258)
T ss_dssp HHHHH-SCCSEEEEEEETTSCHH---HHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH-CSCEEEC
T ss_pred HHHhh-cCCCEEEEEeCCCchhh---HHHHHHHHHh-----cCCCEEEEEECcCCCCccchHHHHHHHHHHc-CCCEEEE
Confidence 44332 57999999999987532 2335555654 3789999999999854211 133444333 2455669
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||+++.|+++++..+....
T Consensus 147 SA~~g~gi~el~~~i~~~~ 165 (258)
T 3a1s_A 147 SSVTGEGLEELKEKIVEYA 165 (258)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHh
Confidence 9999999999999987643
No 94
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.83 E-value=6.1e-20 Score=155.31 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=100.4
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC---Cc
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL---GK 175 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~--~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~---~~ 175 (310)
..++|+++|.+|||||||+|+|++.. ....+.+++|.......+. ..+.+|||||+.+.... ..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~l~Dt~G~~~~~~~~~~~~ 90 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-----------DELHFVDVPGYGFAKVSKSERE 90 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-----------TTEEEEECCCBCCCSSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-----------CcEEEEECCCCCccccCHHHHH
Confidence 35789999999999999999999876 2336666777654443331 26899999997554221 01
Q ss_pred ---hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHHHHH
Q 021615 176 ---GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTEEIL 249 (310)
Q Consensus 176 ---~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~~l~ 249 (310)
.+...+++....+|++++|+|+++..+..+.. +...+.. .+.|+++|+||+|+.+..+. .+++.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~ 164 (195)
T 1svi_A 91 AWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN 164 (195)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHc
Confidence 11223333334449999999999877766543 3344544 36899999999999875432 233333333
Q ss_pred h---cCCCccccCccCCHHHHHHHHhhc
Q 021615 250 K---IGCDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 250 ~---~g~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
. ..+.++|++++.|++++++.+...
T Consensus 165 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 192 (195)
T 1svi_A 165 IDPEDELILFSSETKKGKDEAWGAIKKM 192 (195)
T ss_dssp CCTTSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccCCCceEEEEccCCCCHHHHHHHHHHH
Confidence 2 235569999999999999998654
No 95
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.83 E-value=7.4e-21 Score=162.57 Aligned_cols=161 Identities=14% Similarity=0.044 Sum_probs=107.1
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
....+|+++|.+|||||||+++|++........+..+.......+.... . ...+.+|||||+.+....
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~--~~~l~l~Dt~G~~~~~~~------ 90 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG----K--TVKLQIWDTAGQERFRSV------ 90 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETT----E--EEEEEEECCTTHHHHSCC------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECC----e--eeEEEEEcCCCcHhHHHH------
Confidence 4567899999999999999999998765443333333332233333221 0 127899999998654221
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~ 256 (310)
+..+++.+|++++|+|++++.+++....|..++..+.. .+.|+++|+||+|+..... ...+..+.....+ +.++
T Consensus 91 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 167 (200)
T 2o52_A 91 -TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET 167 (200)
T ss_dssp -CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEE
T ss_pred -HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEE
Confidence 23456789999999999998888888888887776543 4689999999999964321 1223333334444 5568
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||+++.|++++|..+....
T Consensus 168 SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 168 SALTGENVEEAFLKCARTI 186 (200)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999987655
No 96
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.6e-20 Score=163.14 Aligned_cols=163 Identities=15% Similarity=0.085 Sum_probs=108.6
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
...++|+|+|.+|||||||+++|++........+..+.......+.... .. ..+.+|||||+.++...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~~------ 78 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEG----KR--IKAQIWDTAGQERYRAI------ 78 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETT----EE--EEEEEECCTTTTTTTCC------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC----EE--EEEEEEECCCccchhhh------
Confidence 3457899999999999999999998875443333333322222333221 11 26899999998765332
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC--CCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG--CDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g--~~~~ 256 (310)
+..+++.+|++++|+|++++.+++....|..++..+.. .+.|+++|+||+|+....+ ..++..+.....+ +.++
T Consensus 79 -~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 155 (223)
T 3cpj_B 79 -TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTET 155 (223)
T ss_dssp -CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred -HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 22456789999999999998888888888888876542 3689999999999965321 1223333333344 4568
Q ss_pred ccCccCCHHHHHHHHhhccCC
Q 021615 257 TSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~~~ 277 (310)
||+++.|++++|..+.....+
T Consensus 156 Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 156 SALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp CCC-CCCHHHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999998776543
No 97
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.82 E-value=1.2e-19 Score=153.31 Aligned_cols=165 Identities=19% Similarity=0.115 Sum_probs=104.0
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCc----eeeccceEeeCCC---CCCCccCCCceEEEeCCCCCccccC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFT----TLMPNLGRLDGDP---TLGAEKYSSEATLADLPGLIEGAHL 173 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~t----T~~~~~~~v~~~~---~~~~~~~~~~~~i~DtPG~~~~~~~ 173 (310)
...+|+++|.+|||||||++.+.+........... ...++.+.-.... ...... ..+.+|||||+.+...
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~- 89 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK--TRFHLYTVPGQVFYNA- 89 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCE--EEEEEEECCSCCSCSH-
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCc--eEEEEEeCCChHHHHH-
Confidence 34689999999999999999888765332110000 0111221111110 111111 2689999999876522
Q ss_pred CchHHHHHHHHhhhcCEEEEecccCCCCcHH---HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh
Q 021615 174 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVN---DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK 250 (310)
Q Consensus 174 ~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~---~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~ 250 (310)
.+..+++.+|++++|+|++++...+ .+..+...+........+.|+++|+||+|+.+. ...+++.+.+..
T Consensus 90 ------~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~ 162 (198)
T 3t1o_A 90 ------SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA-LPVEMVRAVVDP 162 (198)
T ss_dssp ------HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC-CCHHHHHHHHCT
T ss_pred ------HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc-cCHHHHHHHHHh
Confidence 3334678999999999998543222 223333334443333457999999999999765 223455555555
Q ss_pred cCC---CccccCccCCHHHHHHHHhhcc
Q 021615 251 IGC---DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 251 ~g~---~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.++ .++||+++.|++++|..+....
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 544 5599999999999999987655
No 98
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=7.2e-21 Score=182.08 Aligned_cols=157 Identities=19% Similarity=0.249 Sum_probs=98.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~ 179 (310)
.++|++||.||||||||+|+|++....+ .+++++|.+...+.+.... ..+.+|||||+..... ....+..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~~~~ 74 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--------YDFNLIDTGGIDIGDEPFLAQIRQ 74 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--------SCCEEEC---------CHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--------ceEEEEECCCCCCcchhHHHHHHH
Confidence 3689999999999999999999987664 8899999887776665432 2799999999964321 1123444
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcC---CCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIG---CDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g---~~~~ 256 (310)
.+..+++.||++++|+|+.++.+..+. .+.+.+.. .++|+++|+||+|+....... . .+..++ +..+
T Consensus 75 ~~~~~~~~ad~il~vvD~~~~~~~~d~-~~~~~l~~-----~~~pvilv~NK~D~~~~~~~~---~-~~~~lg~~~~~~i 144 (436)
T 2hjg_A 75 QAEIAMDEADVIIFMVNGREGVTAADE-EVAKILYR-----TKKPVVLAVNKLDNTEMRANI---Y-DFYSLGFGEPYPI 144 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHTT-----CCSCEEEEEECCCC-----CC---C-SSGGGSSCCCEEC
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECccCccchhhH---H-HHHHcCCCCeEEE
Confidence 556678899999999999987666553 34444543 478999999999987542211 1 112333 4458
Q ss_pred ccCccCCHHHHHHHHhhccC
Q 021615 257 TSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~~ 276 (310)
||+++.|+.++++.+.....
T Consensus 145 SA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 145 SGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp BTTTTBTHHHHHHHHHHTGG
T ss_pred eCcCCCChHHHHHHHHHhcC
Confidence 99999999999999876653
No 99
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.82 E-value=8.2e-21 Score=163.86 Aligned_cols=168 Identities=17% Similarity=0.092 Sum_probs=107.2
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCC----CccCCCceEEEeCCCCCccccCCc
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG----AEKYSSEATLADLPGLIEGAHLGK 175 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~----~~~~~~~~~i~DtPG~~~~~~~~~ 175 (310)
....+|+|+|.+|||||||+++|++........+..+.+.....+....... .......+.+|||||+.+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----- 97 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF----- 97 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-----
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH-----
Confidence 4457899999999999999999998764221111111111111222111000 0000126899999997543
Q ss_pred hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhc--C
Q 021615 176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKI--G 252 (310)
Q Consensus 176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~--g 252 (310)
...+..+++.+|++++|+|+++..+++....|..++..+.. ..+.|+++|+||+|+..... ..+...+..... .
T Consensus 98 --~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~ 174 (217)
T 2f7s_A 98 --RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY-CENPDIVLIGNKADLPDQREVNERQARELADKYGIP 174 (217)
T ss_dssp --HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCT-TTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC
T ss_pred --HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc
Confidence 33445667899999999999987777776666655543221 14689999999999975322 123333333333 4
Q ss_pred CCccccCccCCHHHHHHHHhhcc
Q 021615 253 CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+.++||+++.|++++|..+....
T Consensus 175 ~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 175 YFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 55699999999999999987655
No 100
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=9e-21 Score=181.40 Aligned_cols=162 Identities=16% Similarity=0.181 Sum_probs=110.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch---
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG--- 176 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~--- 176 (310)
...+|+++|.||||||||+|+|++.+.. ++++++||.+.....+..+. ..+.+|||||+.+.......
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~e~ 245 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--------QEFVIVDTAGMRKKGKVYETTEK 245 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--------EEEEETTHHHHTCBTTBCCCCSH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--------eEEEEEECCCcCcCccccchHHH
Confidence 3478999999999999999999998765 48889999987776665443 26899999999665432111
Q ss_pred H-HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHH----HHHHHh
Q 021615 177 L-GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSL----TEEILK 250 (310)
Q Consensus 177 l-~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l----~~~l~~ 250 (310)
+ ......+++.+|++++|+|++++.+.++.. |...+.. .++|+++|+||+|+.+..+ ..+++ .+.+..
T Consensus 246 ~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~ 319 (436)
T 2hjg_A 246 YSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-IAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF 319 (436)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-HHHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhccc
Confidence 1 112245678999999999999988877764 5555554 4789999999999976432 12233 333322
Q ss_pred ---cCCCccccCccCCHHHHHHHHhhccC
Q 021615 251 ---IGCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 251 ---~g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
..+.++||+++.|+.++|..+.....
T Consensus 320 ~~~~~~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 320 LDYAPILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp GTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence 24556999999999999998876543
No 101
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=3.8e-20 Score=157.24 Aligned_cols=158 Identities=19% Similarity=0.154 Sum_probs=107.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|++..... .+..|+.......+..+. . ...+.+|||||+.+ .. .
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~----~--~~~~~l~Dt~G~~~-----~~---~ 91 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW-EYDPTLESTYRHQATIDD----E--VVSMEILDTAGQED-----TI---Q 91 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETT----E--EEEEEEEECCCCCC-----CH---H
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCCCCceEEEEEEECC----E--EEEEEEEECCCCCc-----cc---c
Confidence 34689999999999999999999876432 222222221112222111 1 12689999999875 12 2
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV 256 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~ 256 (310)
+..+++.+|++++|+|++++.+++....|..++..+.. ..+.|+++|+||+|+.... +....+.+.+ ...+.++
T Consensus 92 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~ 169 (196)
T 2atv_A 92 REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEEGEKLATEL-ACAFYEC 169 (196)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH-TSEEEEC
T ss_pred hhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHh-CCeEEEE
Confidence 34456789999999999998888888777777766432 1368999999999997531 2222333222 2345679
Q ss_pred ccCccC-CHHHHHHHHhhcc
Q 021615 257 TSETEL-SSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~-gi~~l~~~l~~~~ 275 (310)
||+++. |+.++|..+....
T Consensus 170 Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 170 SACTGEGNITEIFYELCREV 189 (196)
T ss_dssp CTTTCTTCHHHHHHHHHHHH
T ss_pred CCCcCCcCHHHHHHHHHHHH
Confidence 999999 9999999987654
No 102
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=1.8e-20 Score=157.71 Aligned_cols=157 Identities=22% Similarity=0.377 Sum_probs=112.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC--chHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG--KGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~--~~l~~~ 180 (310)
.+|+++|.+|||||||+++|++....+..++++|.....+.+.... ..+.+|||||+.+..... ..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~~~ 79 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--------EKFKVVDLPGVYSLTANSIDEIIARD 79 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--------EEEEEEECCCCSCCSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--------cEEEEEECCCcCccccccHHHHHHHH
Confidence 5799999999999999999999775567778888877777766442 278999999998763211 123333
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH---hHHHHHHHHHHhcCCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEILKIGCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~l~~~l~~~g~~~~s 257 (310)
++.. ..+|++++|+|.++ .+....|..++.. .+.|+++|+||+|+.... ...+.+.+.+ ...+.++|
T Consensus 80 ~~~~-~~~~~~i~v~d~~~---~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~S 149 (188)
T 2wjg_A 80 YIIN-EKPDLVVNIVDATA---LERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL-GVKVVPLS 149 (188)
T ss_dssp HHHH-HCCSEEEEEEEGGG---HHHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH-TSCEEECB
T ss_pred HHhc-cCCCEEEEEecchh---HHHHHHHHHHHHh-----cCCCEEEEEEhhhccccccchHHHHHHHHHh-CCCeEEEE
Confidence 3221 35899999999875 4445556666654 368999999999985432 1233444333 24566799
Q ss_pred cCccCCHHHHHHHHhhccCC
Q 021615 258 SETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~~~ 277 (310)
++++.|++++|..+......
T Consensus 150 a~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTT
T ss_pred ecCCCCHHHHHHHHHHHHHh
Confidence 99999999999998776644
No 103
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.82 E-value=3e-20 Score=157.92 Aligned_cols=155 Identities=20% Similarity=0.199 Sum_probs=102.5
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|++.... .. .+|.......+.... ..+.+|||||+.+... +
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~----~--- 89 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKN--------ICFTVWDVGGQDKIRP----L--- 89 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEETT--------EEEEEEECC-----CT----T---
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEECC--------EEEEEEECCCCHhHHH----H---
Confidence 3468999999999999999999876521 11 112222222233221 2789999999976522 2
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cCC
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGC 253 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g~ 253 (310)
+..+++.+|++++|+|++++.+++....++..+.... ...+.|+++|+||+|+.+... .+++.+.+.. ..+
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 167 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQED-ELRDAVLLVFANKQDMPNAMP-VSELTDKLGLQHLRSRTWYV 167 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhccc-ccCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEE
Confidence 2345678999999999999888877776666654321 123689999999999976522 2334433321 124
Q ss_pred CccccCccCCHHHHHHHHhhcc
Q 021615 254 DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.++||+++.|++++|..+....
T Consensus 168 ~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp EECBTTTTBTHHHHHHHHHHHT
T ss_pred EECcCCCcCCHHHHHHHHHHHH
Confidence 5699999999999999987654
No 104
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.82 E-value=1.6e-20 Score=157.25 Aligned_cols=159 Identities=18% Similarity=0.118 Sum_probs=107.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++.... ..+..|+.......+.... .. ..+.+|||||+.+.... .
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~~-------~ 70 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDG----KP--VNLGLWDTAGQEDYDRL-------R 70 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETT----EE--EEEEEECCCCSGGGTTT-------G
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECC----EE--EEEEEEECCCCHhHHHH-------H
Confidence 357999999999999999999976532 2233333222222222111 11 26789999999765321 1
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------------HHHHHH
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEE 247 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~l~~~ 247 (310)
..+++.+|++++|+|++++.+++... .|...+..+.+ +.|+++|+||+|+....... ++..+.
T Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (186)
T 1mh1_A 71 PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 147 (186)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHH
Confidence 23467899999999999887777775 57777776543 78999999999997643211 122222
Q ss_pred HHhc---CCCccccCccCCHHHHHHHHhhccCC
Q 021615 248 ILKI---GCDKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 248 l~~~---g~~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
.... .+.++||+++.|++++|..+.....+
T Consensus 148 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 148 AKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 3333 34569999999999999998776543
No 105
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.82 E-value=2.6e-20 Score=159.76 Aligned_cols=157 Identities=18% Similarity=0.134 Sum_probs=109.2
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|++... ...+..|+.......+..+.. . ..+.+|||||+.+... .
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~----~--~~l~i~Dt~G~~~~~~-------~ 94 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK----P--VNLGLWDTAGLEDYDR-------L 94 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-C----E--EEEEEEEECCSGGGTT-------T
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCE----E--EEEEEEECCCchhhHH-------H
Confidence 457899999999999999999997653 233444444333333333211 1 1567999999976532 1
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------------HHHHH
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTE 246 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~l~~ 246 (310)
+..+++.+|++++|+|+++..+++... .|...+..+. .+.|+++|+||+|+....... ++...
T Consensus 95 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 4gzl_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHH
Confidence 223567899999999999988888775 6777777654 378999999999997653311 12222
Q ss_pred HHHhcC---CCccccCccCCHHHHHHHHhhc
Q 021615 247 EILKIG---CDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 247 ~l~~~g---~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
.....+ +.++||+++.|++++|..+...
T Consensus 172 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred HHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 333444 5569999999999999998654
No 106
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=3.7e-20 Score=178.16 Aligned_cols=162 Identities=17% Similarity=0.193 Sum_probs=112.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC----Cc
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL----GK 175 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~----~~ 175 (310)
...+|+++|.+|+|||||+|+|++.+.. ++++++||.+.....+.... ..+.+|||||+.+.... ..
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--------~~~~l~DT~G~~~~~~~~~~~e~ 265 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--------QEFVIVDTAGMRKKGKVYETTEK 265 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--------EEEEETTGGGTTTBTTBCCCCSH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--------ceEEEEECCCCCcCcccchHHHH
Confidence 4578999999999999999999987644 48899999988777776543 27999999998664321 12
Q ss_pred hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-hHHHHHHHHHHh----
Q 021615 176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-DRLQSLTEEILK---- 250 (310)
Q Consensus 176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~~~~~l~~~l~~---- 250 (310)
......+.+++.||++++|+|+++....++ ..+...+.. .++|+++|+||+|+.+.. ...+++.+.+..
T Consensus 266 ~~~~~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 339 (456)
T 4dcu_A 266 YSVLRALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQF 339 (456)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH-----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhccc
Confidence 222234567889999999999998666554 445555654 478999999999997542 223333333332
Q ss_pred ---cCCCccccCccCCHHHHHHHHhhccC
Q 021615 251 ---IGCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 251 ---~g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
..+.++||+++.|++++|..+.....
T Consensus 340 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 340 LDYAPILFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp GTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 34566999999999999999876543
No 107
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.81 E-value=2.4e-20 Score=161.21 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=97.3
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++.... ..+..|+.......+.... .. ..+.+|||||+.+... ..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~l~l~Dt~G~~~~~~-------~~ 99 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKG----KP--VHLHIWDTAGQDDYDR-------LR 99 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETT----EE--EEEEEEEC-----------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECC----EE--EEEEEEECCCchhhhH-------HH
Confidence 468999999999999999999986532 2233333222222222211 11 2689999999876522 22
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------------HHHHHH
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEE 247 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~l~~~ 247 (310)
..++..+|++++|+|++++.+++... .|..++..+. .+.|+++|+||+|+....... ++..+.
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 176 (214)
T 2j1l_A 100 PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM 176 (214)
T ss_dssp -----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHH
Confidence 23466899999999999887777775 6777777654 368999999999997653211 122333
Q ss_pred HHhcC---CCccccCccCCHHHHHHHHhhcc
Q 021615 248 ILKIG---CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 248 l~~~g---~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
....+ +.++||+++.|++++|..+....
T Consensus 177 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 177 ARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp HHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 33444 45699999999999999987655
No 108
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.81 E-value=3.4e-20 Score=158.48 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=107.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++...... +..|+.......+.... .. ..+.+|||||+.+.... .
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~~-------~ 90 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIADIEVDG----KQ--VELALWDTAGQEDYDRL-------R 90 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEEEEETT----EE--EEEEEECCCCSGGGTTT-------G
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEEEEECC----EE--EEEEEEECCCchhHHHH-------H
Confidence 35899999999999999999998764322 22222222212222211 11 26899999998765321 1
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------------HHHHHH
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------------QSLTEE 247 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~l~~~ 247 (310)
..+++.+|++++|+|+++..+++.. ..|...+..+. .+.|+++|+||+|+....... ++..+.
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (201)
T 2gco_A 91 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM 167 (201)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHH
Confidence 2356789999999999988777777 56777777654 378999999999998653211 122233
Q ss_pred HHhcC---CCccccCccCCHHHHHHHHhhcc
Q 021615 248 ILKIG---CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 248 l~~~g---~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
....+ +.++||+++.|++++|..+...+
T Consensus 168 ~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 168 ANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33343 45699999999999999986643
No 109
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.81 E-value=3.4e-20 Score=160.37 Aligned_cols=160 Identities=14% Similarity=0.073 Sum_probs=109.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|++.... ..+..|+.......+.... .. ..+.+|||||+.+....
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~~------- 91 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEE----QR--VELSLWDTSGSPYYDNV------- 91 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC------CE--EEEEEEEECCSGGGTTT-------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECC----EE--EEEEEEECCCCHhHHHH-------
Confidence 3468999999999999999999987643 2222232222222222221 11 26899999998765321
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-------------hHHHHHHH
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR-------------DRLQSLTE 246 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~-~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-------------~~~~~l~~ 246 (310)
...+++.+|++++|+|+++..+++. ...|..++..+. .+.|+++|+||+|+.+.. ...++..+
T Consensus 92 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 168 (214)
T 3q3j_B 92 RPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168 (214)
T ss_dssp GGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH
T ss_pred HHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHH
Confidence 2234678999999999999888887 688888888764 378999999999996421 11222233
Q ss_pred HHHhc---CCCccccCccCC-HHHHHHHHhhccCC
Q 021615 247 EILKI---GCDKVTSETELS-SEDAVKSLSTEGGE 277 (310)
Q Consensus 247 ~l~~~---g~~~~sa~~~~g-i~~l~~~l~~~~~~ 277 (310)
..... .+.++||+++.| ++++|..+...+..
T Consensus 169 ~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 169 IAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 33333 456699999998 99999998776543
No 110
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.81 E-value=1.1e-21 Score=167.41 Aligned_cols=161 Identities=15% Similarity=0.150 Sum_probs=106.5
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
....+|+++|.+|||||||+|+|++........+.++.+.....+.... .. ..+.+|||||+.+.....
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~~~----- 99 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG----KT--IKLQIWDTAGQERFRTIT----- 99 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETT----EE--EEEEEECCTTCTTCCCCS-----
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECC----EE--EEEEEEECCCcHhHHHHH-----
Confidence 3457899999999999999999998764433333333333333333221 11 268999999987654321
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh----HHHHHHHHHHhcCCCc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD----RLQSLTEEILKIGCDK 255 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~l~~~l~~~g~~~ 255 (310)
..+++.+|++++|+|+++..+++....|+..+..+.. .+.|+++|+||+|+..... ....+...+ .+.+.+
T Consensus 100 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~ 174 (199)
T 3l0i_B 100 --SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL-GIPFLE 174 (199)
T ss_dssp --CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTT-TCCBCC
T ss_pred --HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCccccCCHHHHHHHHHHc-CCeEEE
Confidence 2345689999999999999888888888888876543 3689999999999975321 122222222 245667
Q ss_pred cccCccCCHHHHHHHHhhccC
Q 021615 256 VTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+||+++.|+.++|..+.....
T Consensus 175 vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 175 TSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp CCC---HHHHHHHHHHTTTTT
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999876653
No 111
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.81 E-value=4.9e-19 Score=165.11 Aligned_cols=163 Identities=27% Similarity=0.415 Sum_probs=119.4
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc-hHH-
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLG- 178 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~-~l~- 178 (310)
..++|+++|++|||||||+|+|++....+.+++++|.....+.+.... ..+.+|||||+.+...... .+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~Dt~G~~~~~~~~~~~~~~ 237 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--------FRYQIIDTPGLLDRPISERNEIEK 237 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--------EEEEEEECTTTSSSCSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--------ceEEEEeCCCccccchhhhhHHHH
Confidence 457899999999999999999999886667889999887776665332 2689999999976533211 122
Q ss_pred HHHHHHhhhcCEEEEecccCCCC--cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh--cCCC
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAEN--PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK--IGCD 254 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~--~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~--~g~~ 254 (310)
..+......+|++++|+|+++.. ..+....|..++..... ++|+++|+||+|+....+ .+...+.+.. ..+.
T Consensus 238 ~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 313 (357)
T 2e87_A 238 QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADEEN-IKRLEKFVKEKGLNPI 313 (357)
T ss_dssp HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCHHH-HHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCChHH-HHHHHHHHHhcCCCeE
Confidence 22222234689999999998765 55666667777765432 789999999999987543 3344444443 3456
Q ss_pred ccccCccCCHHHHHHHHhhcc
Q 021615 255 KVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 255 ~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+||+++.|++++++.+....
T Consensus 314 ~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 314 KISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp ECBTTTTBTHHHHHHHHHHHH
T ss_pred EEeCCCCcCHHHHHHHHHHHH
Confidence 699999999999999987765
No 112
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.81 E-value=3.2e-20 Score=156.18 Aligned_cols=157 Identities=16% Similarity=0.146 Sum_probs=106.3
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++.... ..+..|+.......+.... .. ..+.+|||||+.++... .
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~----~~--~~~~i~Dt~G~~~~~~~-------~ 72 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDT----QR--IELSLWDTSGSPYYDNV-------R 72 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSS----CE--EEEEEEEECCSGGGTTT-------G
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECC----EE--EEEEEEECCCChhhhhh-------H
Confidence 467999999999999999999987532 2222222222222222221 11 26899999998765321 1
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----------------hHHHHH
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRLQSL 244 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----------------~~~~~l 244 (310)
..+++.+|++++|+|++++.+++.. ..|..++..+. .+.|+++|+||+|+.... +....+
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 73 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence 2346789999999999988887777 67777787664 368999999999997421 112223
Q ss_pred HHHHHhcCCCccccC-ccCCHHHHHHHHhhcc
Q 021615 245 TEEILKIGCDKVTSE-TELSSEDAVKSLSTEG 275 (310)
Q Consensus 245 ~~~l~~~g~~~~sa~-~~~gi~~l~~~l~~~~ 275 (310)
.+.+....+.++||+ ++.|++++|..+...+
T Consensus 150 ~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 150 AKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 322222346679998 6899999999986654
No 113
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=1.6e-20 Score=157.09 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=103.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|++.+... + ..|.......+.... ..+.+|||||+.+....
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~-~~t~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~~------- 78 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVT--T-KPTIGFNVETLSYKN--------LKLNVWDLGGQTSIRPY------- 78 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEE--E-CSSTTCCEEEEEETT--------EEEEEEEEC----CCTT-------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCc--c-CCcCccceEEEEECC--------EEEEEEECCCCHhHHHH-------
Confidence 45689999999999999999999765311 0 112112222333221 27899999999765321
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-------CC
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GC 253 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-------g~ 253 (310)
+..++..+|++++|+|++++.+++....++..+.... ...+.|+++|+||+|+.+... .+++.+.+... .+
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPGALS-ASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTTCCC-HHHHHHHTTTTTCCSSCEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcCh-hhCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEE
Confidence 2345678999999999999888887777766665432 124789999999999976422 23344433211 24
Q ss_pred CccccCccCCHHHHHHHHhhcc
Q 021615 254 DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.++||+++.|++++++.+....
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHH
Confidence 5689999999999999987654
No 114
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=2.3e-19 Score=154.38 Aligned_cols=159 Identities=21% Similarity=0.139 Sum_probs=97.2
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH-
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR- 179 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~- 179 (310)
..++|+++|.+|||||||+++|++... ...++.++. ....+..+.. . ...+.+|||||+.+. ..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~~--~~~~~~~~~~---~--~~~~~i~Dt~G~~~~-------~~~ 70 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITD--SSAIYKVNNN---R--GNSLTLIDLPGHESL-------RFQ 70 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCSC--EEEEEECSST---T--CCEEEEEECCCCHHH-------HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCcce--eeEEEEecCC---C--ccEEEEEECCCChhH-------HHH
Confidence 347899999999999999999998762 233443332 2222333210 0 127999999998643 22
Q ss_pred HHHHHhhhcCEEEEecccCCCC-cHH-HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH---hHHHHHHHHHH-----
Q 021615 180 NFLRHLRRTRLLVHVIDAAAEN-PVN-DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRLQSLTEEIL----- 249 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~-~~~-~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~l~~~l~----- 249 (310)
.+..+++.+|++++|+|+++.. ... ....|...+........+.|+++|+||+|+.... ...+.+.+.+.
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 150 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVT 150 (214)
T ss_dssp HHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhcc
Confidence 2334478899999999998632 122 2233443433311112368999999999997542 22333333333
Q ss_pred --------------------------------hcCCCccccCcc------CCHHHHHHHHhhc
Q 021615 250 --------------------------------KIGCDKVTSETE------LSSEDAVKSLSTE 274 (310)
Q Consensus 250 --------------------------------~~g~~~~sa~~~------~gi~~l~~~l~~~ 274 (310)
...+.++||+++ .|++++|..+...
T Consensus 151 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 151 RSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred chhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 122445899999 9999999988653
No 115
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.81 E-value=9.1e-20 Score=166.67 Aligned_cols=164 Identities=17% Similarity=0.112 Sum_probs=114.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..||+++|.+|||||||+|+|++.... .++++++|.....+.+.... ...+.+|||||+.+... ..+...
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-------~~~l~i~Dt~G~~~~~~--~~~~~~ 73 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-------NMTLNLWDCGGQDVFME--NYFTKQ 73 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-------TEEEEEEEECCSHHHHH--HHHTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-------ceEEEEEECCCcHHHhh--hhhhhH
Confidence 368999999999999999999987533 36788899887777665321 12799999999865410 000112
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------HHHHHHHHHhcC-
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILKIG- 252 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------~~~l~~~l~~~g- 252 (310)
....++.+|++++|+|+++..+++++..|...+........+.|+++|+||+|+...... .++..+....+|
T Consensus 74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 234457899999999999999888876665544432211237899999999999873222 133444444554
Q ss_pred ----CCccccCccCCHHHHHHHHhhcc
Q 021615 253 ----CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 253 ----~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+.++|+++ .++.++|..+....
T Consensus 154 ~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 154 PNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred CCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 34589999 88888888776654
No 116
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=3.9e-20 Score=158.80 Aligned_cols=158 Identities=16% Similarity=0.163 Sum_probs=105.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++..... .+..|+.......+.... . ...+.+|||||+.+.... .
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~----~--~~~~~i~Dt~G~~~~~~~-------~ 90 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDG----K--QVELALWDTAGQEDYDRL-------R 90 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETT----E--EEEEEEEECTTCTTCTTT-------G
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECC----E--EEEEEEEECCCcHHHHHH-------H
Confidence 3589999999999999999999876432 222222211111222111 1 126899999998765321 1
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHH-------------HHHHH
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQ-------------SLTEE 247 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-------------~l~~~ 247 (310)
..++..+|++++|+|+++..+++.. ..|...+..+. .+.|+++|+||+|+.......+ ...+.
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 167 (207)
T 2fv8_A 91 PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAM 167 (207)
T ss_dssp GGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHH
Confidence 2356789999999999987777776 56777777653 3789999999999976532211 11222
Q ss_pred HHhcC---CCccccCccCCHHHHHHHHhhccC
Q 021615 248 ILKIG---CDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 248 l~~~g---~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
....+ +.++||+++.|++++|..+.....
T Consensus 168 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 168 AVRIQAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22333 456999999999999999877653
No 117
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.81 E-value=3.9e-20 Score=159.11 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=107.5
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|++..... .+..|+.......+..+. .. ..+.+|||||+.++...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~~------- 92 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDT----QR--IELSLWDTSGSPYYDNV------- 92 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEESSS----SE--EEEEEEEECCSGGGTTT-------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEECC----EE--EEEEEEeCCCcHhhhHH-------
Confidence 45789999999999999999999876432 222222222222232221 11 26899999998765322
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----------------hHHHH
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEAR----------------DRLQS 243 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----------------~~~~~ 243 (310)
...++..+|++++|+|+++..+++.. ..|..++..+. .+.|+++|+||+|+.... +....
T Consensus 93 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 169 (205)
T 1gwn_A 93 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN 169 (205)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH
Confidence 12346789999999999988887777 67778887764 368999999999997421 11223
Q ss_pred HHHHHHhcCCCccccC-ccCCHHHHHHHHhhcc
Q 021615 244 LTEEILKIGCDKVTSE-TELSSEDAVKSLSTEG 275 (310)
Q Consensus 244 l~~~l~~~g~~~~sa~-~~~gi~~l~~~l~~~~ 275 (310)
+.+.+....+.++||+ ++.|++++|..+...+
T Consensus 170 ~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 170 MAKQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 3323222345679998 6899999999886543
No 118
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.81 E-value=2.8e-19 Score=150.30 Aligned_cols=154 Identities=21% Similarity=0.172 Sum_probs=98.8
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC----ch-
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----KG- 176 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~----~~- 176 (310)
+++|+++|.+|||||||+++|++........|++|.......+. .+.+|||||+....... ..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~------------~~~l~Dt~G~~~~~~~~~~~~~~~ 68 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK------------NHKIIDMPGFGFMMGLPKEVQERI 68 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET------------TEEEEECCCBSCCTTSCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC------------CEEEEECCCccccccCCHHHHHHH
Confidence 36899999999999999999999886666677776654433321 58999999975432211 11
Q ss_pred --HHHHHHHH-hhhcCEEEEecccCCCCcHHHH-HHHH------------HHHHhcCCCCCCCCEEEEEeCCCCCCcH-h
Q 021615 177 --LGRNFLRH-LRRTRLLVHVIDAAAENPVNDY-RTVK------------EELRMYNPDYLERPFIVVLNKIDLPEAR-D 239 (310)
Q Consensus 177 --l~~~~~~~-l~~~d~il~VvD~s~~~~~~~~-~~~~------------~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-~ 239 (310)
+...+++. ...++++++|+|.+ ++... ..|. ..+.. .+.|+++|+||+|+.... +
T Consensus 69 ~~~~~~~~~~~~~~~~~v~~v~d~~---s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~ 140 (190)
T 2cxx_A 69 KDEIVHFIEDNAKNIDVAVLVVDGK---AAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKNVQE 140 (190)
T ss_dssp HHHHHHHHHHHGGGCCEEEEEEETT---HHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSCHHH
T ss_pred HHHHHHHHHhhhccCCEEEEEEcch---hhhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccCcHHH
Confidence 12222332 44556666776654 33332 2222 22222 368999999999998753 2
Q ss_pred HHHHHHHHHHh------cCCCccccCccCCHHHHHHHHhhcc
Q 021615 240 RLQSLTEEILK------IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 240 ~~~~l~~~l~~------~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
..+.+.+.+.. ..+.++||+++.|++++|+.+....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 141 VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp HHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 33444433321 0135799999999999999987655
No 119
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.80 E-value=9.7e-20 Score=153.58 Aligned_cols=155 Identities=19% Similarity=0.138 Sum_probs=106.0
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
...+|+++|.+|||||||+++|++..... .. .|.......+.... ..+.+|||||+.+.....
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~--~t~~~~~~~~~~~~--------~~~~~~Dt~G~~~~~~~~------ 83 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TV--PTVGVNLETLQYKN--------ISFEVWDLGGQTGVRPYW------ 83 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-EC--SSTTCCEEEEEETT--------EEEEEEEECCSSSSCCCC------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cC--CCCceEEEEEEECC--------EEEEEEECCCCHhHHHHH------
Confidence 45689999999999999999998765211 11 12222223333321 278999999997654321
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh-------cCC
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK-------IGC 253 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~-------~g~ 253 (310)
..+++.+|++++|+|++++.+++....+...+.... ...+.|+++|+||+|+....+ .+++.+.+.. ..+
T Consensus 84 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~ 160 (189)
T 2x77_A 84 -RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED-ELRKSLLLIFANKQDLPDAAS-EAEIAEQLGVSSIMNRTWTI 160 (189)
T ss_dssp -SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCS-TTTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEE
T ss_pred -HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh-hcCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhccCCceEE
Confidence 234578999999999999888887766666554321 224789999999999986522 2333333321 125
Q ss_pred CccccCccCCHHHHHHHHhhcc
Q 021615 254 DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.++||+++.|++++++.+....
T Consensus 161 ~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 161 VKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEccCCCccCHHHHHHHHHHHH
Confidence 5699999999999999987654
No 120
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.80 E-value=7.4e-20 Score=154.69 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=105.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
..+|+++|.+|||||||+++|++... ...+..|+.......+..+. .. ..+.+|||||+.++.. +
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~l~i~Dt~G~~~~~~----~---- 85 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSEETVDH----QP--VHLRVMDTADLDTPRN----C---- 85 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETT----EE--EEEEEEECCC---CCC----T----
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEEEEECC----EE--EEEEEEECCCCCcchh----H----
Confidence 46899999999999999999998762 23343343322111222111 11 2688999999876532 2
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCcH----hHHHHHHHHHHhcCCCcc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEAR----DRLQSLTEEILKIGCDKV 256 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~-~~~~~p~ivv~NK~Dl~~~~----~~~~~l~~~l~~~g~~~~ 256 (310)
..++..+|++++|+|+++..+++....|..++..+.. ...+.|+++|+||+|+.... +....+.+.+ .+.+.++
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~ 164 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF-GCLFFEV 164 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH-TCEEEEC
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc-CCcEEEE
Confidence 2356689999999999998888888888887776421 01368999999999996432 2223333222 2346669
Q ss_pred cc-CccCCHHHHHHHHhhcc
Q 021615 257 TS-ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa-~~~~gi~~l~~~l~~~~ 275 (310)
|| +++.|++++|..+....
T Consensus 165 Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 165 SACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CSSSCSHHHHHHHHHHHHHH
T ss_pred eecCccccHHHHHHHHHHHH
Confidence 99 89999999999986643
No 121
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.80 E-value=1.6e-19 Score=167.92 Aligned_cols=111 Identities=38% Similarity=0.643 Sum_probs=84.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC---------CCccCCCceEEEeCCCCCccccC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLIEGAHL 173 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~---------~~~~~~~~~~i~DtPG~~~~~~~ 173 (310)
.+|++||.||||||||+|+|++....++++||||+.|+.+.+...... +.......+.+|||||+.++++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 579999999999999999999998777999999999999888753210 00000126899999999998877
Q ss_pred CchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHH
Q 021615 174 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEEL 213 (310)
Q Consensus 174 ~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l 213 (310)
.++++..|+.+++.||++++|+|+++ .++.++++.+..||
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL 132 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL 132 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHH
Confidence 77888889999999999999999986 25677776665555
No 122
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.80 E-value=9.6e-20 Score=166.09 Aligned_cols=157 Identities=24% Similarity=0.315 Sum_probs=110.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCC-ccccCCchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI-EGAHLGKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~-~~~~~~~~l~~~ 180 (310)
..|+++|+||||||||+|+|++.+..+ ++.+.||.....+.+.... ..+.++||||+. +.. ..+...
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--------~~i~~iDTpG~~~~~~---~~l~~~ 77 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--------YQAIYVDTPGLHMEEK---RAINRL 77 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--------EEEEEESSSSCCHHHH---HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--------eeEEEEECcCCCccch---hhHHHH
Confidence 369999999999999999999987654 6778888766666655332 278999999986 221 112222
Q ss_pred H----HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-hcCC--
Q 021615 181 F----LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-KIGC-- 253 (310)
Q Consensus 181 ~----~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-~~g~-- 253 (310)
+ ...++.+|++++|+|+++ ....+ ..+.+.+.. .+.|+++|+||+|+...........+.+. .+++
T Consensus 78 ~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~-~~i~~~l~~-----~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~ 150 (301)
T 1ega_A 78 MNKAASSSIGDVELVIFVVEGTR-WTPDD-EMVLNKLRE-----GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLD 150 (301)
T ss_dssp HTCCTTSCCCCEEEEEEEEETTC-CCHHH-HHHHHHHHS-----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSE
T ss_pred HHHHHHHHHhcCCEEEEEEeCCC-CCHHH-HHHHHHHHh-----cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCc
Confidence 2 344678999999999987 33333 334445543 36899999999999873333333344444 3454
Q ss_pred -CccccCccCCHHHHHHHHhhccCC
Q 021615 254 -DKVTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 254 -~~~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
..+|++++.|+.++++.+...+.+
T Consensus 151 ~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 151 IVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp EEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCc
Confidence 458999999999999999876544
No 123
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.80 E-value=6e-20 Score=156.59 Aligned_cols=164 Identities=20% Similarity=0.178 Sum_probs=82.2
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCcee-eccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~-~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
...+|+++|.+|||||||+++|++..... ..+..|+- +.....+...... .. ..+.+|||||+.+. .
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--~~--~~~~l~Dt~G~~~~-------~ 87 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT--VS--VELFLLDTAGSDLY-------K 87 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSS--EE--EEEEEEETTTTHHH-------H
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc--cE--EEEEEEECCCcHHH-------H
Confidence 44689999999999999999999874332 33333332 3344444433100 01 26899999998543 2
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCC-cHh-HHHHHHHHHHhcC--C
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPE-ARD-RLQSLTEEILKIG--C 253 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~-~~~~p~ivv~NK~Dl~~-~~~-~~~~l~~~l~~~g--~ 253 (310)
..+..+++.+|++++|+|++++.+++....|..++..+... ..+.|+++|+||+|+.. ... ..++..+....++ +
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~ 167 (208)
T 2yc2_C 88 EQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDF 167 (208)
T ss_dssp HHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEE
Confidence 23345577899999999999988888888888888775421 13689999999999976 221 1233444444444 5
Q ss_pred CccccCc-cCCHHHHHHHHhhcc
Q 021615 254 DKVTSET-ELSSEDAVKSLSTEG 275 (310)
Q Consensus 254 ~~~sa~~-~~gi~~l~~~l~~~~ 275 (310)
.++|+++ +.|+.++|..+....
T Consensus 168 ~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 168 FDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp EECCC-------CHHHHHHHHHH
T ss_pred EEeccCCCCcCHHHHHHHHHHHH
Confidence 5689999 999999999987655
No 124
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.80 E-value=3.3e-19 Score=151.68 Aligned_cols=162 Identities=17% Similarity=0.159 Sum_probs=97.3
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
+..++|+++|.+|||||||++++++..... ...+.+............ .. ...+.+|||||+.++......
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~--~~~l~i~Dt~G~~~~~~~~~~--- 88 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN-ETLFLESTNKIYKDDISN---SS--FVNFQIWDFPGQMDFFDPTFD--- 88 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGG-GGGGCCCCCSCEEEEECC---TT--SCCEEEEECCSSCCTTCTTCC---
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCc-ceeeeccccceeeeeccC---CC--eeEEEEEECCCCHHHHhhhhh---
Confidence 446789999999999999999999853221 111111111111111100 01 127999999998775322100
Q ss_pred HHHHHhhhcCEEEEecccCCC--CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------HHHHHHHHHh
Q 021615 180 NFLRHLRRTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILK 250 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~--~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------~~~l~~~l~~ 250 (310)
...+++.+|++++|+|+++. .....+..|..++.... .+.|+++|+||+|+...... .....+.+..
T Consensus 89 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~ 164 (196)
T 3llu_A 89 -YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN---PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLAD 164 (196)
T ss_dssp -HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC---TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC---CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHH
Confidence 02445689999999999986 33333344444443222 37899999999999864321 1112222332
Q ss_pred -----c--CCCccccCccCCHHHHHHHHhhcc
Q 021615 251 -----I--GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 251 -----~--g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
. .+.++||++ .|++++|..++...
T Consensus 165 ~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 165 AGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 2 345699999 99999999987643
No 125
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.80 E-value=7.3e-20 Score=170.95 Aligned_cols=111 Identities=39% Similarity=0.699 Sum_probs=86.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC--------CCCc-----cCCCceEEEeCCCCCc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT--------LGAE-----KYSSEATLADLPGLIE 169 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~--------~~~~-----~~~~~~~i~DtPG~~~ 169 (310)
.+|++||.||||||||+|+|++..+.++++||+|+.|+.+.+..... .... .....+.+|||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57999999999999999999998777799999999999998754210 0000 0112689999999999
Q ss_pred cccCCchHHHHHHHHhhhcCEEEEecccCCC----------CcHHHHHHHHHHH
Q 021615 170 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEEL 213 (310)
Q Consensus 170 ~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~----------~~~~~~~~~~~~l 213 (310)
+++..++++..|+.+++.||++++|+|+++. ++..+++.+..+|
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL 135 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETEL 135 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHH
Confidence 9888888999999999999999999999862 4555555544444
No 126
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=1.7e-19 Score=156.22 Aligned_cols=161 Identities=16% Similarity=0.105 Sum_probs=104.5
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
...+|+|+|.+|||||||+|+|++....+ ..++.++.+.....+..+. .. ..+.+|||+|.... .+
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~----~~--~~l~~~Dt~g~~~~-------~~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDG----ES--ATIILLDMWENKGE-------NE 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETT----EE--EEEEEECCTTTTHH-------HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECC----ee--eEEEEeecCCCcch-------hh
Confidence 34789999999999999999999765433 3333333222222232221 11 15789999997431 11
Q ss_pred HH-HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHH--hcCCCc
Q 021615 180 NF-LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEIL--KIGCDK 255 (310)
Q Consensus 180 ~~-~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~--~~g~~~ 255 (310)
.+ ..+++.+|++++|+|+++..+++....|+..+..... ..+.|+++|+||+|+...... .++...... .+.+.+
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e 181 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIE 181 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEE
Confidence 11 1224668999999999998888888888777765321 136899999999999643211 111111112 234567
Q ss_pred cccCccCCHHHHHHHHhhcc
Q 021615 256 VTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~ 275 (310)
+||+++.|++++|..++...
T Consensus 182 ~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 182 TSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999987654
No 127
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=2.3e-19 Score=174.17 Aligned_cols=157 Identities=16% Similarity=0.175 Sum_probs=115.4
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
+...+|+|+|.+|||||||+|+|++.+. +. .++|.......+.+... .+.+|||||+.++..
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~~~~~~~--------~~~l~Dt~G~~~~~~------- 381 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVETVTYKNV--------KFNVWDVGGQDKIRP------- 381 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEEEESSSC--------EEEEEEECCCGGGSG-------
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEEEEeCCE--------EEEEEECCCcHHHHH-------
Confidence 3457899999999999999999998872 22 24466666666665432 799999999876533
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-------C
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------G 252 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-------g 252 (310)
.+..+++.+|++|+|+|+++..+++....++.++.... ...++|+++|+||+|+.+... .+++.+.+... .
T Consensus 382 ~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 459 (497)
T 3lvq_E 382 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWY 459 (497)
T ss_dssp GGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSG-GGTTCEEEEEEECCSSSSCCC-HHHHHHHTTCTTCCSSCEE
T ss_pred HHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhh-hcCCCcEEEEEECCCCCcCCC-HHHHHHHhchhhhhcCCeE
Confidence 23456789999999999999888888877777665421 124789999999999976432 23344333211 2
Q ss_pred CCccccCccCCHHHHHHHHhhccC
Q 021615 253 CDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 253 ~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+.++||+++.|++++|+.+.....
T Consensus 460 ~~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 460 VQPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 556999999999999999987663
No 128
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.79 E-value=2.8e-19 Score=171.15 Aligned_cols=160 Identities=24% Similarity=0.278 Sum_probs=107.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC-----c
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-----K 175 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~-----~ 175 (310)
..+|+++|+||||||||+|+|++.... ++++++||.++..+.+..+.. .+.+|||||+.+..... .
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--------~~~l~Dt~G~~~~~~~~~~~~e~ 251 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--------KYVFVDTAGLRRKSRVEPRTVEK 251 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--------EEEESSCSCC-----------CC
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--------EEEEEECCCCccccccchhhHHH
Confidence 468999999999999999999998754 488999999988888765432 68999999985432211 0
Q ss_pred hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHH----HHHHh
Q 021615 176 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLT----EEILK 250 (310)
Q Consensus 176 ~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~----~~l~~ 250 (310)
-.......+++.+|++++|+|++...+.++. .+...+.. .++|+++|+||+|+.+..+ ..+++. +.+..
T Consensus 252 ~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 325 (439)
T 1mky_A 252 YSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYF 325 (439)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhcc
Confidence 0011224567889999999999987666553 34444544 4789999999999976432 123333 22222
Q ss_pred c---CCCccccCccCCHHHHHHHHhhcc
Q 021615 251 I---GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 251 ~---g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
. .+..+||++|.|++++|..+....
T Consensus 326 ~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 326 IDYSPLIFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp GTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 2 344589999999999999886644
No 129
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.79 E-value=2.2e-20 Score=161.81 Aligned_cols=156 Identities=12% Similarity=0.077 Sum_probs=111.0
Q ss_pred cCeEEEEcCCCCcHHHHHHHHH-cCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAIT-HAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~-~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
..+|+++|.+|||||||+++|+ +.... ..+..++|.......+.... ..+.+|||||+.+....
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------~~~~i~Dt~G~~~~~~~------ 80 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP--------IKFNVWDTAGQEKFGGL------ 80 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEE--------EEEEEEEECSGGGTSCC------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEE--------EEEEEEeCCChHHHhHH------
Confidence 4689999999999999999954 33222 25556666654444433221 27899999998765332
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--HHHHHHHHHHhcCCCccc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGCDKVT 257 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~l~~~l~~~g~~~~s 257 (310)
...+++.+|++++|+|+++..+++....|..++..+. .+.|+++|+||+|+.+... ....+... ....+.++|
T Consensus 81 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~S 155 (221)
T 3gj0_A 81 -RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVKAKSIVFHRK-KNLQYYDIS 155 (221)
T ss_dssp -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCSSCGGGCCHHHH-HTCEEEECB
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCccccccccHHHHHHHHH-cCCEEEEEe
Confidence 1234568999999999999888888888888888764 3789999999999975421 11112211 134566799
Q ss_pred cCccCCHHHHHHHHhhccC
Q 021615 258 SETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~~ 276 (310)
++++.|++++|..+.....
T Consensus 156 a~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 156 AKSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp GGGTBTTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999877553
No 130
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.79 E-value=2.3e-20 Score=179.41 Aligned_cols=163 Identities=25% Similarity=0.279 Sum_probs=106.8
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 176 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~ 176 (310)
.++...+|+++|+||||||||+|+|++.+.. +.++++||.+.....+..... ++.+|||||+.+....-+.
T Consensus 220 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--------~v~liDT~G~~~~~~~ve~ 291 (462)
T 3geh_A 220 LLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--------PVQVLDTAGIRETSDQVEK 291 (462)
T ss_dssp HHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--------EEEECC-------------
T ss_pred hhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--------EEEEEECCccccchhHHHH
Confidence 3456678999999999999999999987654 488899998776666654432 7899999999765322121
Q ss_pred HH-HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCCCc
Q 021615 177 LG-RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGCDK 255 (310)
Q Consensus 177 l~-~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~ 255 (310)
++ +....++..+|++++|+|++++....+ ..+++.+. .+|+++|+||+|+...... ..+.+......+..
T Consensus 292 ~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-------~~piivV~NK~Dl~~~~~~-~~~~~~~~~~~~i~ 362 (462)
T 3geh_A 292 IGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-------HRPLILVMNKIDLVEKQLI-TSLEYPENITQIVH 362 (462)
T ss_dssp -------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-------TSCEEEEEECTTSSCGGGS-TTCCCCTTCCCEEE
T ss_pred HHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-------CCcEEEEEECCCCCcchhh-HHHHHhccCCcEEE
Confidence 11 123456788999999999998766555 33444443 4799999999999875431 11110011234566
Q ss_pred cccCccCCHHHHHHHHhhccCC
Q 021615 256 VTSETELSSEDAVKSLSTEGGE 277 (310)
Q Consensus 256 ~sa~~~~gi~~l~~~l~~~~~~ 277 (310)
+|++++.|++++++.+......
T Consensus 363 iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 363 TAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp EBTTTTBSHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998775543
No 131
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=159.20 Aligned_cols=166 Identities=14% Similarity=0.129 Sum_probs=97.7
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCC--CceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYP--FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~--~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
...++|+|+|.+|||||||+|+|++........+ ++|..+....+.... ..+.||||||+.+.......+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~i~liDTpG~~~~~~~~~~~ 98 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--------TELVVVDTPGIFDTEVPNAET 98 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--------EEEEEEECCSCC-----CHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--------ceEEEEECCCccCCCCCHHHH
Confidence 3457899999999999999999999887655555 566666655555432 278999999998765443434
Q ss_pred HHHHHHH----hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH-------HHHHH
Q 021615 178 GRNFLRH----LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL-------QSLTE 246 (310)
Q Consensus 178 ~~~~~~~----l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------~~l~~ 246 (310)
...+.+. .+.+|++++|+|++.... .+...+...+..+... ..+|+++|+||+|+....+.. +.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~ 176 (239)
T 3lxx_A 99 SKEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQD 176 (239)
T ss_dssp HHHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC------------CHHHHH
T ss_pred HHHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccHHHHHHhchHHHHH
Confidence 4444443 455799999999976443 3333332222222111 246999999999997643211 23444
Q ss_pred HHHhcCCCc--cccC-----ccCCHHHHHHHHhhcc
Q 021615 247 EILKIGCDK--VTSE-----TELSSEDAVKSLSTEG 275 (310)
Q Consensus 247 ~l~~~g~~~--~sa~-----~~~gi~~l~~~l~~~~ 275 (310)
.+..++... ++.. ...++.+++..+....
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 177 LMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp HHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 455554332 3333 3368888887765543
No 132
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.79 E-value=2.1e-19 Score=161.25 Aligned_cols=157 Identities=22% Similarity=0.334 Sum_probs=111.6
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc--hHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--GLGR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~--~l~~ 179 (310)
.++|+++|.+|||||||+|+|++....+++++++|.....+.+.... ..+.+|||||+.+...... .+.+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--------~~~~l~DtpG~~~~~~~~~~~~~~~ 74 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--------KEFLVVDLPGIYSLTAHSIDELIAR 74 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--------EEEEEEECCCCSCCCSSCHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--------ceEEEEeCCCccccccCCHHHHHHH
Confidence 46899999999999999999999887668889999887777766443 2689999999987543211 1222
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~~~ 256 (310)
.++ ....+|++++|+|+++. +....+...+... ...|+++|+||+|+..... ....+.+.+ .+.+.++
T Consensus 75 ~~~-~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l-g~~~~~~ 145 (271)
T 3k53_A 75 NFI-LDGNADVIVDIVDSTCL---MRNLFLTLELFEM----EVKNIILVLNKFDLLKKKGAKIDIKKMRKEL-GVPVIPT 145 (271)
T ss_dssp HHH-HTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT----TCCSEEEEEECHHHHHHHTCCCCHHHHHHHH-SSCEEEC
T ss_pred Hhh-hccCCcEEEEEecCCcc---hhhHHHHHHHHhc----CCCCEEEEEEChhcCcccccHHHHHHHHHHc-CCcEEEE
Confidence 322 12579999999999864 2233344455443 1289999999999754221 234444433 2456669
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
|++++.|+.+++..+....
T Consensus 146 Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 146 NAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp BGGGTBTHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 9999999999999987654
No 133
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.78 E-value=4.7e-19 Score=157.00 Aligned_cols=164 Identities=21% Similarity=0.209 Sum_probs=102.6
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCC--ceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC-c---
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPF--TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-K--- 175 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~--tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~-~--- 175 (310)
..+|+|||.+|||||||+|+|++.+..+..+++ +|..+..+.+.... ..+.||||||+.+..... .
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--------~~i~liDTPG~~~~~~~~~~~~~ 92 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--------CHVEVVDTPDIFSSQVSKTDPGC 92 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--------EEEEEEECCSCSSTTHHHHSTTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--------cEEEEEECCCCCCCCCCcHHHHH
Confidence 357999999999999999999999877654443 67776666665442 279999999997543211 1
Q ss_pred -hHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHH-hcCCCCCCCCEEEEEeCCCCCCcH--hHH-----HHHHH
Q 021615 176 -GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR-MYNPDYLERPFIVVLNKIDLPEAR--DRL-----QSLTE 246 (310)
Q Consensus 176 -~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~-~~~~~~~~~p~ivv~NK~Dl~~~~--~~~-----~~l~~ 246 (310)
.+.+.+....+.+|++|+|+|++. ....+...+ +.+. .+.....+.|+++|.||+|+.+.. +.. +.+..
T Consensus 93 ~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~-~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~ 170 (247)
T 3lxw_A 93 EERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAV-RQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRE 170 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHH-HHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHH-HHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHH
Confidence 122222333489999999999985 333333333 3333 333333468999999999997531 111 23455
Q ss_pred HHHhcCCCc--cccCc-----cCCHHHHHHHHhhcc
Q 021615 247 EILKIGCDK--VTSET-----ELSSEDAVKSLSTEG 275 (310)
Q Consensus 247 ~l~~~g~~~--~sa~~-----~~gi~~l~~~l~~~~ 275 (310)
.+..++... ++... +.|+.+++..+....
T Consensus 171 l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 171 LVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 555555332 23322 689999998876544
No 134
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.78 E-value=1.2e-19 Score=172.33 Aligned_cols=158 Identities=25% Similarity=0.267 Sum_probs=111.4
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
..++|+++|.+|+|||||+|+|++.... +++++++|.++....+..... .++.+|||||+.++.........
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-------~~l~liDTpG~~d~~~l~~~~~~ 105 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-------GPVTLVDTPGLDDVGELGRLRVE 105 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-------EEEEEEECSSTTCCCTTCCCCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-------CeEEEEECcCCCcccchhHHHHH
Confidence 4568999999999999999999998764 478889999888777765432 16899999999987655444445
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH---hcCCCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL---KIGCDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~---~~g~~~~ 256 (310)
.....+..+|++++|+|++. ......|..++..+ +.|+++|+||+|+...... +..+.+. ...+..+
T Consensus 106 ~~~~~l~~aD~vllVvD~~~---~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~v 175 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDSAP---TPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLV 175 (423)
T ss_dssp HHHHHHTSCSEEEEECSSSC---CHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCC
T ss_pred HHHHHHhcCCEEEEEEeCCC---hHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEE
Confidence 56677889999999999932 23345677777763 7899999999999876432 2222222 2456679
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||+++.|++++++.+....
T Consensus 176 SAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHhh
Confidence 9999999999999998766
No 135
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.4e-19 Score=165.50 Aligned_cols=155 Identities=20% Similarity=0.209 Sum_probs=105.4
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..++|+|+|.+|||||||+++|++... ...+ .|.......+.... ..+.||||||+.++.. +
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~--pT~~~~~~~~~~~~--------~~l~i~Dt~G~~~~~~----~--- 225 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTI--PTIGFNVETVEYKN--------ISFTVWDVGGQDKIRP----L--- 225 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC-EEEE--EETTEEEEEEEETT--------EEEEEEECC-----CC----S---
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC-CCcc--cccceEEEEEecCc--------EEEEEEECCCCHhHHH----H---
Confidence 345899999999999999999998762 1222 24333333443322 2789999999876533 2
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhc-------CC
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKI-------GC 253 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~-------g~ 253 (310)
+..+++.+|++++|+|+++..++.....++..+.... ...+.|+++|+||+|+.+... .+++...+... .+
T Consensus 226 ~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~ 303 (329)
T 3o47_A 226 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYI 303 (329)
T ss_dssp HHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTCTTCCSSCEEE
T ss_pred HHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhh-ccCCCeEEEEEECccCCcccC-HHHHHHHhchhhhhcCCCEE
Confidence 2345678999999999999888887766655554321 123789999999999986532 34455444322 24
Q ss_pred CccccCccCCHHHHHHHHhhcc
Q 021615 254 DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 254 ~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.++||+++.|++++|..+....
T Consensus 304 ~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 304 QATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp EECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHH
Confidence 5699999999999999987655
No 136
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.65 E-value=1.3e-20 Score=161.25 Aligned_cols=158 Identities=16% Similarity=0.108 Sum_probs=104.5
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
+...+|+++|.+|||||||+++|++.... ..+..|+.......+..+ ... ..+.+|||||+.+...
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~----~~~--~~l~i~Dt~G~~~~~~------- 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVD----GKP--VNLGLWDTAGQEDYDR------- 93 (204)
Confidence 45678999999999999999999976532 223333322222222211 111 2577999999876532
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------------HHHHH
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------------LQSLT 245 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~l~ 245 (310)
....+++.+|++++|+|++++.++++.. .|...+..+. .+.|+++|+||+|+.+.... .+...
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
Confidence 2233456899999999999988777765 6666666543 26899999999999754211 11111
Q ss_pred HHHHhc---CCCccccCccCCHHHHHHHHhhc
Q 021615 246 EEILKI---GCDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 246 ~~l~~~---g~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
+..... .+.++||+++.|++++|+.+...
T Consensus 171 ~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 171 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 111222 45679999999999999987653
No 137
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.78 E-value=8.5e-19 Score=155.95 Aligned_cols=165 Identities=15% Similarity=0.064 Sum_probs=105.6
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCC-CCCC-ceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH-
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIA-DYPF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL- 177 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~-~~~~-tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l- 177 (310)
...+|+|+|.+|||||||+|+|++....+. ..+. +|.....+.+.... ..+.||||||+.+.......+
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~i~iiDTpG~~~~~~~~~~~~ 92 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--------REIVIIDTPDMFSWKDHCEALY 92 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--------EEEEEEECCGGGGSSCCCHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--------CEEEEEECcCCCCCCCCHHHHH
Confidence 346799999999999999999999875543 3333 56555555544332 279999999998765433222
Q ss_pred ---HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEe-CCCCCCcHhHH-------HHHHH
Q 021615 178 ---GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN-KIDLPEARDRL-------QSLTE 246 (310)
Q Consensus 178 ---~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~N-K~Dl~~~~~~~-------~~l~~ 246 (310)
.+.+..+++.+|++++|+|++... .. ...++..+..+.......|.++|+| |+|+....-.. ..+.+
T Consensus 93 ~~i~~~~~~~~~~~d~il~V~d~~~~~-~~-~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~ 170 (260)
T 2xtp_A 93 KEVQRCYLLSAPGPHVLLLVTQLGRYT-SQ-DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSK 170 (260)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEETTCCC-HH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEEeCCCCC-HH-HHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHH
Confidence 333445678899999999998622 22 2333344444321112467777777 99998542100 11222
Q ss_pred HHHhcC-----C--CccccCccCCHHHHHHHHhhcc
Q 021615 247 EILKIG-----C--DKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 247 ~l~~~g-----~--~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+..++ + ..+||+++.|++++|..+....
T Consensus 171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 333332 3 5689999999999999886654
No 138
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.78 E-value=4.5e-19 Score=150.75 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=102.8
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.++|+++|.+|||||||+|+|++..... ..++.++.+.....+..+. .. ..+.+|||+|..... ..+...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~l~~~Dt~~~~~~~---~~~~~~ 76 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDG----ES--ATIILLDMWENKGEN---EWLHDH 76 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETT----EE--EEEEEECCCCC-------CTTGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECC----eE--EEEEEEEeccCcchh---hhHHHh
Confidence 4689999999999999999999754332 3333333222222222221 11 157899999975421 112222
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCccc
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVT 257 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~s 257 (310)
+++.+|++++|+|+++..+++....|+..+..... ..+.|+++|+||+|+...... .++........ .+.++|
T Consensus 77 ---~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~S 152 (192)
T 2cjw_A 77 ---CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETS 152 (192)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred ---hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEec
Confidence 34578999999999998888888878777765422 136899999999998642111 11111111223 456699
Q ss_pred cCccCCHHHHHHHHhhcc
Q 021615 258 SETELSSEDAVKSLSTEG 275 (310)
Q Consensus 258 a~~~~gi~~l~~~l~~~~ 275 (310)
|+++.|++++|..++...
T Consensus 153 A~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 153 AAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHH
Confidence 999999999999987755
No 139
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=3.8e-19 Score=171.05 Aligned_cols=156 Identities=19% Similarity=0.256 Sum_probs=99.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-CCchHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGR 179 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~-~~~~l~~ 179 (310)
.++|+|+|.||||||||+|+|++.+.. +.+++++|.+.....+.... ..+.+|||||+..... ....+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--------~~~~liDT~G~~~~~~~~~~~~~~ 94 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--------YDFNLIDTGGIDIGDEPFLAQIRQ 94 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--------SCCEEECCCC------CCHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--------ceEEEEECCCCCCcchHHHHHHHH
Confidence 578999999999999999999998765 47889999887777665432 2799999999864321 1234455
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHhcCC---Ccc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILKIGC---DKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~---~~~ 256 (310)
....+++.+|++++|+|+.+.....+. .+.+.+.. .++|+++|+||+|+...... .. .+..+++ ..+
T Consensus 95 ~~~~~~~~ad~il~VvD~~~~~~~~d~-~l~~~l~~-----~~~pvilV~NK~D~~~~~~~---~~-e~~~lg~~~~~~i 164 (456)
T 4dcu_A 95 QAEIAMDEADVIIFMVNGREGVTAADE-EVAKILYR-----TKKPVVLAVNKLDNTEMRAN---IY-DFYSLGFGEPYPI 164 (456)
T ss_dssp HHHHHHHHCSEEEEEEESSSCSCHHHH-HHHHHHTT-----CCSCEEEEEECC------------C-CSGGGSSSSEEEC
T ss_pred HHHhhHhhCCEEEEEEeCCCCCChHHH-HHHHHHHH-----cCCCEEEEEECccchhhhhh---HH-HHHHcCCCceEEe
Confidence 566678899999999999876555543 34455543 47999999999998754221 11 1223333 358
Q ss_pred ccCccCCHHHHHHHHhhcc
Q 021615 257 TSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~~ 275 (310)
||+++.|+.++++.+....
T Consensus 165 SA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 165 SGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp CTTTCTTHHHHHHHHHTTG
T ss_pred ecccccchHHHHHHHHhhc
Confidence 9999999999999987654
No 140
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.76 E-value=1.8e-18 Score=145.65 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=99.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCC-CCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPT-LGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~-~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.+|+++|.+|||||||+++|++.... ...+. +|............. .... ...+.+|||||+.++... .
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~----~-- 73 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQS-ATVGIDVKDWPIQIRDKRKR--DLVLNVWDFAGREEFYST----H-- 73 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC-----------CEEEEEEECSHHHHHTT----S--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcc-eeccEEeEEeeeccccCCCC--ceEEEEEecCCCHHHHHh----h--
Confidence 57999999999999999999986322 22222 222111111111100 0001 127899999998654321 1
Q ss_pred HHHHhhhcCEEEEecccCCC-CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHH---HHHHHHHH-hcC---
Q 021615 181 FLRHLRRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRL---QSLTEEIL-KIG--- 252 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~---~~l~~~l~-~~g--- 252 (310)
..++..++++++|+|++++ .+++.+..|..++.... .+.|+++|+||+|+.+..... ....+.+. ..+
T Consensus 74 -~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
T 2zej_A 74 -PHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPA 149 (184)
T ss_dssp -HHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCE
T ss_pred -HHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcc
Confidence 2335578999999999986 35677777877776543 368999999999998653321 12222222 234
Q ss_pred ---CCccccCccC-CHHHHHHHHhhcc
Q 021615 253 ---CDKVTSETEL-SSEDAVKSLSTEG 275 (310)
Q Consensus 253 ---~~~~sa~~~~-gi~~l~~~l~~~~ 275 (310)
+.++||+++. ++.+++..+....
T Consensus 150 ~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 150 IRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp EEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred hhheEEEecccCchhHHHHHHHHHHHH
Confidence 4468999996 9999998876554
No 141
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.75 E-value=9.5e-18 Score=150.69 Aligned_cols=163 Identities=16% Similarity=0.156 Sum_probs=88.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCC------CceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCc-
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYP------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK- 175 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~------~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~- 175 (310)
++|+|+|.+|+|||||+|+|++.......++ .+|............ .+. ..++.+|||||+.+......
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~--~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE--GGV--QLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC----C--CEEEEEEECCCCSCCSCCTTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec--CCe--EEEEEEEECCCccccccchhh
Confidence 5799999999999999999998876655542 334333333332211 111 12789999999965432211
Q ss_pred --h----HHHHHHHHhhh-------------cCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 176 --G----LGRNFLRHLRR-------------TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 176 --~----l~~~~~~~l~~-------------~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
. +..+|..++.. +|+++|+++.+.......-..+++.+.. ++|+++|+||+|+..
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 158 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCC
Confidence 1 22233344433 7799999977663322222334555542 689999999999986
Q ss_pred cHhH---HHHHHHHHHhc--CCCccccCccCCHHHHHHHHhhcc
Q 021615 237 ARDR---LQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 237 ~~~~---~~~l~~~l~~~--g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
..+. .+.+.+.+... .+..+|+.++.|+.+++..+....
T Consensus 159 ~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 159 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 5432 23445555544 455589999999999998886643
No 142
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.75 E-value=1.2e-18 Score=159.50 Aligned_cols=161 Identities=18% Similarity=0.142 Sum_probs=111.0
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchH
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 177 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l 177 (310)
..+...+|+++|.+|+|||||++++++... ...+..|+.......+..+. .. ..+.+|||||+.+...
T Consensus 151 ~~~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~----~~--~~~~l~Dt~G~~~~~~----- 218 (332)
T 2wkq_A 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDG----KP--VNLGLWDTAGLEDYDR----- 218 (332)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETT----EE--EEEEEEEECCCGGGTT-----
T ss_pred cccceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECC----EE--EEEEEEeCCCchhhhH-----
Confidence 345668999999999999999999997653 23444455433333333221 11 1567999999876532
Q ss_pred HHHHHHHhhhcCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------------HHH
Q 021615 178 GRNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-------------LQS 243 (310)
Q Consensus 178 ~~~~~~~l~~~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~ 243 (310)
....++..+|++++|+|++++.++++.. .|...+..+.. +.|+++|+||+|+...... .+.
T Consensus 219 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 219 --LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ 293 (332)
T ss_dssp --TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHH
T ss_pred --HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccccchhhhccccccccccHHH
Confidence 1223567899999999999887777765 57677776543 7899999999999654221 122
Q ss_pred HHHHHHhcC---CCccccCccCCHHHHHHHHhhcc
Q 021615 244 LTEEILKIG---CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 244 l~~~l~~~g---~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
..+.....+ +.++||+++.|++++|..+....
T Consensus 294 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 294 GLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 222333333 45699999999999999987654
No 143
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.75 E-value=1.1e-18 Score=171.10 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=104.2
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCC------CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKP------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 174 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~------~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~ 174 (310)
...||+++|.+|||||||+|+|++... .++...+++..++.+.+..... .....+.+|||||+.....
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~----~~~~~~~i~Dt~G~e~~~~-- 113 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDE----LKECLFHFWDFGGQEIMHA-- 113 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCST----TTTCEEEEECCCSCCTTTT--
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCC----CceEEEEEEECCcHHHHHH--
Confidence 346899999999999999999998762 2222222333333323322211 1123799999999766532
Q ss_pred chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHhcC-
Q 021615 175 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILKIG- 252 (310)
Q Consensus 175 ~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~~g- 252 (310)
+...| ++.+|++++|+|+++. +....|..++..+.+ +.|+++|+||+|+....+ ..+.+.+.+...+
T Consensus 114 --~~~~~---l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~ 182 (535)
T 3dpu_A 114 --SHQFF---MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQKKINERFPAIEN 182 (535)
T ss_dssp --TCHHH---HHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTT
T ss_pred --HHHHH---ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCHHHHHHHHHhcCC
Confidence 23333 4579999999999864 556778888888753 689999999999976433 2344555555555
Q ss_pred -CCccccCccCCHHHHHHHHhhccCCc
Q 021615 253 -CDKVTSETELSSEDAVKSLSTEGGEA 278 (310)
Q Consensus 253 -~~~~sa~~~~gi~~l~~~l~~~~~~~ 278 (310)
+.++||+++.|+++++..+.......
T Consensus 183 ~~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 183 RFHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CEEECCC-----CTTHHHHHHHHHTCT
T ss_pred ceEEEecCcccCHHHHHHHHHHHHhcc
Confidence 56699999999999999988766443
No 144
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.73 E-value=7.3e-18 Score=143.66 Aligned_cols=159 Identities=20% Similarity=0.115 Sum_probs=106.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 181 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~ 181 (310)
.++|+++|++|||||||+++|++........+..+.....+.+..+.. . ..+.+|||||+..... +..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~----~--~~~~i~Dt~g~~~~~~----~~~-- 72 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK----T--IKAQIWDTAGQERYRR----ITS-- 72 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTE----E--EEEEEEECSSGGGTTC----CCH--
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE----E--EEEEEEECCCchhhhh----hhH--
Confidence 468999999999999999999998654433343334444455543321 1 1578999999876432 112
Q ss_pred HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHhc--CCCcccc
Q 021615 182 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILKI--GCDKVTS 258 (310)
Q Consensus 182 ~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~~--g~~~~sa 258 (310)
..++.++++++|+|..+..+++....|..++..... .+.|+++|+||+|+...... .+......... .+.++|+
T Consensus 73 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sa 149 (199)
T 2f9l_A 73 -AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSA 149 (199)
T ss_dssp -HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred -HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeC
Confidence 234578999999999987777776667776665422 36899999999999643211 12222223333 3455999
Q ss_pred CccCCHHHHHHHHhhcc
Q 021615 259 ETELSSEDAVKSLSTEG 275 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~~~ 275 (310)
+++.|+.++++.+....
T Consensus 150 l~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 150 LDSTNVEEAFKNILTEI 166 (199)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987655
No 145
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.73 E-value=3.1e-17 Score=155.33 Aligned_cols=164 Identities=18% Similarity=0.189 Sum_probs=106.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccc-----eEeeCCCC-----CCC-ccCCCceEEEeCCCCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNL-----GRLDGDPT-----LGA-EKYSSEATLADLPGLI 168 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~-----~~v~~~~~-----~~~-~~~~~~~~i~DtPG~~ 168 (310)
..++|+++|.+|+|||||+|+|++..... ..++.+|..... ..+..... ... ......+.+|||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 34689999999999999999999864322 222222221100 00000000 000 0001378999999985
Q ss_pred ccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHH
Q 021615 169 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLT 245 (310)
Q Consensus 169 ~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~ 245 (310)
++ ...+...+..+|++++|+|+++..+..+...+...+..+. .+|+++|+||+|+.+..+ ..+++.
T Consensus 87 ~~-------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~----~~~iivviNK~Dl~~~~~~~~~~~~i~ 155 (403)
T 3sjy_A 87 VL-------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG----VKNLIIVQNKVDVVSKEEALSQYRQIK 155 (403)
T ss_dssp GG-------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT----CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC----CCCEEEEEECccccchHHHHHHHHHHH
Confidence 44 4466777889999999999998764444455555555432 368999999999987543 223344
Q ss_pred HHHHh-----cCCCccccCccCCHHHHHHHHhhcc
Q 021615 246 EEILK-----IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 246 ~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+.+.. ..+..+||+++.|+.++++.|....
T Consensus 156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 44432 2355689999999999999997654
No 146
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.73 E-value=5.9e-18 Score=153.11 Aligned_cols=168 Identities=19% Similarity=0.232 Sum_probs=101.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCC------CCCCCC----------------------ceeeccceE-------ee
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPD------IADYPF----------------------TTLMPNLGR-------LD 145 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~------i~~~~~----------------------tT~~~~~~~-------v~ 145 (310)
..++|+++|.+|||||||+|+|++.... ++..|. +|.+..... +.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998742 133332 222100000 00
Q ss_pred C--CCCCCC-------ccCCCceEEEeCCCCCcccc--CCc----hHHHHHHHHhhhcCEEE-EecccCCCCcHHHHHHH
Q 021615 146 G--DPTLGA-------EKYSSEATLADLPGLIEGAH--LGK----GLGRNFLRHLRRTRLLV-HVIDAAAENPVNDYRTV 209 (310)
Q Consensus 146 ~--~~~~~~-------~~~~~~~~i~DtPG~~~~~~--~~~----~l~~~~~~~l~~~d~il-~VvD~s~~~~~~~~~~~ 209 (310)
+ ...... ......+.+|||||+.+... ... .+......+++.++.++ +|+|+++.....+...+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 0 000000 00013799999999976431 112 34445556777888666 79999875544443334
Q ss_pred HHHHHhcCCCCCCCCEEEEEeCCCCCCcHh-HHHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhh
Q 021615 210 KEELRMYNPDYLERPFIVVLNKIDLPEARD-RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 210 ~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
.+.+.. .+.|+++|+||+|+.+... ..+.+...+.. ..+..+||+++.|+.++++.+..
T Consensus 185 ~~~~~~-----~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 185 AKEVDP-----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp HHHHCT-----TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred HHHhCC-----CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 444432 3689999999999976432 12222221111 13556899999999999998765
No 147
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.72 E-value=8.2e-18 Score=142.70 Aligned_cols=160 Identities=20% Similarity=0.129 Sum_probs=108.2
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
...++|+|+|++|||||||+++|++........+..+.+...+.+..+.. . ..+.+|||||+.+... +.
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~----~--~~~~i~Dt~g~~~~~~----~~- 95 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK----T--IKAQIWDTAGLERYRA----IT- 95 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE----E--EEEEEEEECSCCSSSC----CC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE----E--EEEEEEECCCCcchhh----hh-
Confidence 34578999999999999999999998754444444444444555543321 1 1467899999876532 11
Q ss_pred HHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-HHHHHHHHHh--cCCCcc
Q 021615 180 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR-LQSLTEEILK--IGCDKV 256 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~l~~~l~~--~g~~~~ 256 (310)
..+++.++++++|+|..+..+++.+..|..++..... .+.|+++|+||+|+.+.... .+........ +.+.++
T Consensus 96 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~ 171 (191)
T 1oix_A 96 --SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIET 171 (191)
T ss_dssp --HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred --HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 2334578999999999887666666667666655422 36799999999998643211 1222222233 334559
Q ss_pred ccCccCCHHHHHHHHhhc
Q 021615 257 TSETELSSEDAVKSLSTE 274 (310)
Q Consensus 257 sa~~~~gi~~l~~~l~~~ 274 (310)
|++++.|+.++++.+...
T Consensus 172 Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 172 SALDSTNVEAAFQTILTE 189 (191)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999999999987653
No 148
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.71 E-value=1.4e-18 Score=169.22 Aligned_cols=155 Identities=16% Similarity=0.122 Sum_probs=109.3
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..++|+++|.+|+|||||+++|++........+++|.+.....+.... ...+++|||||+.++....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-------g~~i~~iDTPGhe~f~~~~------ 69 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-------GEKITFLDTPGHAAFSAMR------ 69 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-------SSCCBCEECSSSCCTTTSB------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-------CCEEEEEECCChHHHHHHH------
Confidence 457899999999999999999998765555667778776655554321 1268999999997764421
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--HHHHHHHH---HHh----c
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEE---ILK----I 251 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~l~~~---l~~----~ 251 (310)
.+.+..+|++++|+|+++....+..+.+ ..+.. .+.|+++|+||+|+.+... ....+.+. ... .
T Consensus 70 -~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~-----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~ 142 (537)
T 3izy_P 70 -ARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD-----AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDV 142 (537)
T ss_dssp -BSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT-----TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSE
T ss_pred -HHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH-----cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCc
Confidence 2345689999999999997777666554 34443 3689999999999975321 11111111 011 1
Q ss_pred CCCccccCccCCHHHHHHHHhhcc
Q 021615 252 GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 252 g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+.++||+++.|+.++++.+...+
T Consensus 143 ~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 143 QAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp EECCCCSSSSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCchhHHHHHHHhh
Confidence 355699999999999999986644
No 149
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.71 E-value=8e-17 Score=154.12 Aligned_cols=149 Identities=20% Similarity=0.180 Sum_probs=98.2
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP 148 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~ 148 (310)
+...+|+++|.+|+|||||+++|++....+ ...+++|.+.....+....
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 345689999999999999999996553222 1124456655444444332
Q ss_pred CCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCc-------HHHHHHHHHHHHhcCCCCC
Q 021615 149 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMYNPDYL 221 (310)
Q Consensus 149 ~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~-------~~~~~~~~~~l~~~~~~~~ 221 (310)
..+.+|||||+.++ ...+...+..||++++|+|+++... .+..+.+ ..+.. .
T Consensus 95 --------~~~~iiDTPGh~~f-------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l-~~~~~-----~ 153 (439)
T 3j2k_7 95 --------KHFTILDAPGHKSF-------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA-MLAKT-----A 153 (439)
T ss_pred --------eEEEEEECCChHHH-------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHH-HHHHH-----c
Confidence 27999999998654 4455667789999999999987543 1222222 22332 3
Q ss_pred CCC-EEEEEeCCCCCCc---HhH----HHHHHHHHHhcC--------CCccccCccCCHHHHHH
Q 021615 222 ERP-FIVVLNKIDLPEA---RDR----LQSLTEEILKIG--------CDKVTSETELSSEDAVK 269 (310)
Q Consensus 222 ~~p-~ivv~NK~Dl~~~---~~~----~~~l~~~l~~~g--------~~~~sa~~~~gi~~l~~ 269 (310)
+.| +++|+||+|+... .+. .+++.+.+..++ +.++||++|.|+.++.+
T Consensus 154 ~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 154 GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 567 8999999999642 122 233444444444 44589999999998554
No 150
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.71 E-value=6.7e-17 Score=156.32 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=102.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCC-------CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAK-------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 174 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~-------~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~ 174 (310)
..+|+++|.+|+|||||+++|++.. ......+++|.+.....+.... ..+.+|||||+.+
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--------~~i~iiDtPGh~~----- 85 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--------YRITLVDAPGHAD----- 85 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--------EEEEECCCSSHHH-----
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--------EEEEEEECCChHH-----
Confidence 4689999999999999999999876 1223445666655544444321 2799999999854
Q ss_pred chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhc
Q 021615 175 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKI 251 (310)
Q Consensus 175 ~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~ 251 (310)
+...+...+..+|++++|+|+++....+..+.+ ..+.. .+.|.++|+||+|+.+... ..+++.+.+...
T Consensus 86 --~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~ 157 (482)
T 1wb1_A 86 --LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH-----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQST 157 (482)
T ss_dssp --HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHS
T ss_pred --HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH-HHHHH-----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhh
Confidence 345666778899999999999986555554443 23443 3688999999999986422 223444444433
Q ss_pred ------CCCccccCccCCHHHHHHHHhhc
Q 021615 252 ------GCDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 252 ------g~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
.+..+||+++.|+.++++.+...
T Consensus 158 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~ 186 (482)
T 1wb1_A 158 HNLKNSSIIPISAKTGFGVDELKNLIITT 186 (482)
T ss_dssp SSGGGCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHHh
Confidence 34558999999999999988764
No 151
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.71 E-value=4e-17 Score=145.65 Aligned_cols=128 Identities=15% Similarity=0.098 Sum_probs=88.3
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
...+|+++|.+|+|||||+|+|++.... +.+++++|.......+.... ..+.+|||||+.++........+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~l~liDTpG~~~~~~~~~~~~~ 106 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--------FTINIIDTPGLVEAGYVNHQALE 106 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--------EEEEEEECCCSEETTEECHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--------eeEEEEECCCCCCcccchHHHHH
Confidence 3468999999999999999999998763 47788888877666665443 27999999999887554443333
Q ss_pred HHHHHh--hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 180 NFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 180 ~~~~~l--~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
.+.+.+ ..+|+++||+|++..........+.+.+.........+|+++|+||+|+..
T Consensus 107 ~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 107 LIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 333333 278999999887654332222345556654322112359999999999963
No 152
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.71 E-value=6.6e-17 Score=144.82 Aligned_cols=128 Identities=18% Similarity=0.132 Sum_probs=85.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~-i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
.++|+++|.+|+|||||+|+|++.... +.+++.+|..+....+.... ..+.+|||||+.++..........
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--------~~l~iiDTpG~~~~~~~~~~~~~~ 110 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--------FTLNIIDTPGLIEGGYINDMALNI 110 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--------EEEEEEECCCSEETTEECHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--------eEEEEEECCCCCCCccchHHHHHH
Confidence 468999999999999999999988753 46777777765555444332 279999999998765433333333
Q ss_pred HHHHh--hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 181 FLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 181 ~~~~l--~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
+.+++ ..+|+++||+|++..........+...+.........+|+++|+||+|+...
T Consensus 111 i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 111 IKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp HHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred HHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 33332 3799999998876532222223455556543211112699999999999754
No 153
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.70 E-value=5.3e-17 Score=148.62 Aligned_cols=155 Identities=21% Similarity=0.208 Sum_probs=100.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 182 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~ 182 (310)
||+++|.+|||||||++++.+..... .....+|.......+.. .-+++||||||+.++.. ..+ ...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~---------~v~LqIWDTAGQErf~~--~~l--~~~ 67 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST---------LIDLAVMELPGQLNYFE--PSY--DSE 67 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECS---------SSCEEEEECCSCSSSCC--CSH--HHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEcc---------EEEEEEEECCCchhccc--hhh--hhh
Confidence 68999999999999999988653221 22233444444433321 12799999999988731 111 113
Q ss_pred HHhhhcCEEEEecccCCCCcHHHHHHH---HHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH-------HHHHHHHHHh--
Q 021615 183 RHLRRTRLLVHVIDAAAENPVNDYRTV---KEELRMYNPDYLERPFIVVLNKIDLPEARDR-------LQSLTEEILK-- 250 (310)
Q Consensus 183 ~~l~~~d~il~VvD~s~~~~~~~~~~~---~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------~~~l~~~l~~-- 250 (310)
.+++.++++++|+|+++. ..+....| ..++..+. .+.|+++|+||+|+....++ ..+..+.+.+
T Consensus 68 ~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~---~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~ 143 (331)
T 3r7w_B 68 RLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVN---PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG 143 (331)
T ss_dssp HHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHC---TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred hhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcC---CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc
Confidence 446799999999999987 33444444 33444433 36899999999999875331 1122222322
Q ss_pred -----cCCCccccCccCCHHHHHHHHhhccC
Q 021615 251 -----IGCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 251 -----~g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+.+.++||++ .++.++|..++....
T Consensus 144 ~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 144 LDGVQVSFYLTSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp CSCCCEEEECCCSSS-SHHHHHHHHHHTTSS
T ss_pred ccccCceEEEeccCC-CcHHHHHHHHHHHHH
Confidence 2345689998 589999999887664
No 154
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.70 E-value=5.2e-17 Score=148.14 Aligned_cols=112 Identities=20% Similarity=0.295 Sum_probs=68.1
Q ss_pred ceEEEeCCCCCcccc------CCchHHHHHHHHhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 021615 158 EATLADLPGLIEGAH------LGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLN 230 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~------~~~~l~~~~~~~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~N 230 (310)
.+.+|||||+.+... ....+...+..++..+|++++|+|+++.. ...+...+.+.+.. .+.|+++|+|
T Consensus 132 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-----~~~~~i~v~N 206 (315)
T 1jwy_B 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-----EGKRTIGVIT 206 (315)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-----SCSSEEEEEE
T ss_pred CcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC-----CCCcEEEEEc
Confidence 799999999976321 12335556677889999999999985432 22222234444433 4689999999
Q ss_pred CCCCCCcHh-HHHHHHHHHHh--cCCCc---cccCc---cCCHHHHHHHHhhc
Q 021615 231 KIDLPEARD-RLQSLTEEILK--IGCDK---VTSET---ELSSEDAVKSLSTE 274 (310)
Q Consensus 231 K~Dl~~~~~-~~~~l~~~l~~--~g~~~---~sa~~---~~gi~~l~~~l~~~ 274 (310)
|+|+..... ..+.+...+.. .++.. +|+.. +.|+.+++..+...
T Consensus 207 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~ 259 (315)
T 1jwy_B 207 KLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILY 259 (315)
T ss_dssp CTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHH
T ss_pred CcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHH
Confidence 999986533 22222221112 23333 45555 78888888776543
No 155
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.69 E-value=1.6e-16 Score=156.81 Aligned_cols=159 Identities=19% Similarity=0.219 Sum_probs=104.8
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCC---------C------CCCceeeccceEeeCCCCCCCccCCCceEEEeC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA---------D------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 164 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~---------~------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~Dt 164 (310)
+.+++|+++|.+|+|||||+++|+.....+. + ..+.|.......+.+... ++.. ..+++|||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~-dg~~--~~inliDT 80 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAK-DGNT--YKLHLIDT 80 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECT-TSCE--EEEEEECC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcC-CCCe--EEEEEEEC
Confidence 4567899999999999999999976321110 0 123344333333322110 1111 27899999
Q ss_pred CCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHH
Q 021615 165 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSL 244 (310)
Q Consensus 165 PG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l 244 (310)
||+.++. ..+.+.+..||++++|+|++++...+....|...+. .+.|+++|+||+|+..+. .+..
T Consensus 81 PGh~dF~-------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~a~--~~~v 145 (600)
T 2ywe_A 81 PGHVDFS-------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPSAD--VDRV 145 (600)
T ss_dssp CCSGGGH-------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHHH
T ss_pred CCcHhHH-------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccccC--HHHH
Confidence 9997752 345567789999999999999887777776665543 378999999999998653 2233
Q ss_pred HHHHH-hcC-----CCccccCccCCHHHHHHHHhhccC
Q 021615 245 TEEIL-KIG-----CDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 245 ~~~l~-~~g-----~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
.+.+. .++ +..+||+++.|+.++++.+.....
T Consensus 146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 33333 334 456899999999999999877553
No 156
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.69 E-value=4.6e-17 Score=158.87 Aligned_cols=119 Identities=21% Similarity=0.239 Sum_probs=85.8
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCC----------------CC------CCCceeeccceEeeCCCCCCCccC
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------AD------YPFTTLMPNLGRLDGDPTLGAEKY 155 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i----------------~~------~~~tT~~~~~~~v~~~~~~~~~~~ 155 (310)
+....++|+|+|.+|||||||+++|+.....+ .+ ..++|.......+.+..
T Consensus 9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~------- 81 (528)
T 3tr5_A 9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD------- 81 (528)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT-------
T ss_pred hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC-------
Confidence 45567789999999999999999997322111 00 13445544444454332
Q ss_pred CCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
..+++|||||+.++.. .+.++++.+|++|+|+|+++....+....| ..+.. .++|+++|+||+|+.
T Consensus 82 -~~i~liDTPG~~df~~-------~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~-----~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 82 -YLINLLDTPGHADFTE-------DTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL-----RHTPIMTFINKMDRD 147 (528)
T ss_dssp -EEEEEECCCCSTTCCH-------HHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT-----TTCCEEEEEECTTSC
T ss_pred -EEEEEEECCCchhHHH-------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH-----cCCCEEEEEeCCCCc
Confidence 2799999999987632 466788899999999999988777765544 45554 378999999999997
Q ss_pred Cc
Q 021615 236 EA 237 (310)
Q Consensus 236 ~~ 237 (310)
..
T Consensus 148 ~~ 149 (528)
T 3tr5_A 148 TR 149 (528)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 157
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=1.7e-16 Score=136.76 Aligned_cols=121 Identities=19% Similarity=0.223 Sum_probs=77.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
..++|+++|++|+|||||+++|++...... .++..+..+. .+. ...+.+|||||+.+.. .....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~-~~~--------~~~~~l~Dt~G~~~~~----~~~~~ 74 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-DYD--------GSGVTLVDFPGHVKLR----YKLSD 74 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET-TGG--------GSSCEEEECCCCGGGT----HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEE-Eee--------CceEEEEECCCcHHHH----HHHHH
Confidence 457899999999999999999998763221 0011111111 001 1278999999997652 22223
Q ss_pred HHH-HhhhcCEEEEecccC-CCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCc
Q 021615 181 FLR-HLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 181 ~~~-~l~~~d~il~VvD~s-~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~ 237 (310)
+++ .+..+|++++|+|++ +..++.....+..++..... ...+.|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 322 233489999999999 66666666555555543210 0136899999999999865
No 158
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.68 E-value=4.4e-17 Score=144.89 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=62.6
Q ss_pred hcCEEEEecccCCC--CcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHHh---cCCCccccCcc
Q 021615 187 RTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEILK---IGCDKVTSETE 261 (310)
Q Consensus 187 ~~d~il~VvD~s~~--~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~~---~g~~~~sa~~~ 261 (310)
.||++++|+|++++ .+++.+..|..++..+.. ..+.|+++|+||+|+..... .++..+.... ..+.++||+++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~~-v~~~~~~~~~~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVERY-IRDAHTFALSKKNLQVVETSARSN 239 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCHHH-HHHHHHHHHTSSSCCEEECBTTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccccccHH-HHHHHHHHHhcCCCeEEEEECCCC
Confidence 58999999999997 888888888887765410 13689999999999976433 2333333332 34556999999
Q ss_pred CCHHHHHHHHhhc
Q 021615 262 LSSEDAVKSLSTE 274 (310)
Q Consensus 262 ~gi~~l~~~l~~~ 274 (310)
.|++++|..++..
T Consensus 240 ~gv~elf~~l~~~ 252 (255)
T 3c5h_A 240 VNVDLAFSTLVQL 252 (255)
T ss_dssp BSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998654
No 159
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.68 E-value=1.8e-16 Score=156.53 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=100.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCC---------------CCCCceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIA---------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 165 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~---------------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP 165 (310)
.+.+|+++|.+++|||||+++|+.....+. ...+.|.......+.+... .+.. ..+++||||
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~-~g~~--~~l~liDTP 79 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS-DGET--YQLNFIDTP 79 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECT-TSCE--EEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecC-CCCe--EEEEEEECC
Confidence 456899999999999999999986432211 0123344333333322110 1111 278999999
Q ss_pred CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH--hHHHH
Q 021615 166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--DRLQS 243 (310)
Q Consensus 166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~ 243 (310)
|+.++ ...+.+.+..||++++|+|+++....+....|...+. .+.|+++|+||+|+.++. +..++
T Consensus 80 Gh~dF-------~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~a~~~~v~~e 146 (599)
T 3cb4_D 80 GHVDF-------SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME------MDLEVVPVLNKIDLPAADPERVAEE 146 (599)
T ss_dssp CCGGG-------HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH------TTCEEEEEEECTTSTTCCHHHHHHH
T ss_pred CchHH-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEeeeccCcccccHHHHHHH
Confidence 99765 2345667789999999999999887777777765554 378999999999998653 12233
Q ss_pred HHHHHHhc---CCCccccCccCCHHHHHHHHhhccC
Q 021615 244 LTEEILKI---GCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 244 l~~~l~~~---g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+.+.+ .+ .+..+||+++.|+.++++.+.....
T Consensus 147 i~~~l-g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 147 IEDIV-GIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHT-CCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHh-CCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 33222 11 2456899999999999999876553
No 160
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.68 E-value=1.7e-16 Score=150.51 Aligned_cols=163 Identities=18% Similarity=0.150 Sum_probs=104.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeC-----------CCCCC--CccC--CCceEEE
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDG-----------DPTLG--AEKY--SSEATLA 162 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~-----------~~~~~--~~~~--~~~~~i~ 162 (310)
...+|+++|.+|+|||||+++|++..... ...++.|+......... ....+ ...+ ...+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 44689999999999999999999764321 22344555332221111 00000 0000 1379999
Q ss_pred eCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--
Q 021615 163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD-- 239 (310)
Q Consensus 163 DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-- 239 (310)
||||+.++ ...+.+.+..+|++++|+|+++.. ..+..+.+ ..+..+ ...|+++|+||+|+.+...
T Consensus 89 DtPGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~~----~~~~iivviNK~Dl~~~~~~~ 156 (410)
T 1kk1_A 89 DAPGHEAL-------MTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQII----GQKNIIIAQNKIELVDKEKAL 156 (410)
T ss_dssp ECSSHHHH-------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHH----TCCCEEEEEECGGGSCHHHHH
T ss_pred ECCChHHH-------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc----CCCcEEEEEECccCCCHHHHH
Confidence 99998543 445667778899999999999764 33333333 233332 1358999999999987542
Q ss_pred -HHHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhhcc
Q 021615 240 -RLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 240 -~~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
..+++.+.+.. ..+..+|++++.|+.++++.+....
T Consensus 157 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 157 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 33445555543 2455689999999999999987644
No 161
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.6e-16 Score=132.76 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=77.4
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHH
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 179 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~ 179 (310)
...++|+++|.+|||||||+++|++...... ..+..+.... .+. ...+.+|||||+.+... .+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~---~~~~~~~~~~-~~~--------~~~~~l~Dt~G~~~~~~---~~~~ 110 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-DYD--------GSGVTLVDFPGHVKLRY---KLSD 110 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCC--------CTTCSEEEETTCCBSSC---CHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc---cccCCCceee-eec--------CCeEEEEECCCCchHHH---HHHH
Confidence 4557999999999999999999998763220 0111111111 111 12789999999976532 2223
Q ss_pred HHHHHhhhcCEEEEecccC-CCCcHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCc
Q 021615 180 NFLRHLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 180 ~~~~~l~~~d~il~VvD~s-~~~~~~~~~~~~~~l~~~~~--~~~~~p~ivv~NK~Dl~~~ 237 (310)
.+...+..+|++++|+|++ +..++.....++.++..... ...+.|+++|+||+|+.+.
T Consensus 111 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 111 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 3334455699999999998 65556555555544432210 1136899999999999864
No 162
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.67 E-value=1.6e-16 Score=159.96 Aligned_cols=167 Identities=17% Similarity=0.136 Sum_probs=107.2
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCCceeeccce--------EeeC-CCC---------------CC--
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLG--------RLDG-DPT---------------LG-- 151 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~tT~~~~~~--------~v~~-~~~---------------~~-- 151 (310)
.+..++|+|+|.+|+|||||+|+|++.+..+ +..|.|.. +... ++.. +.. ..
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~-~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~ 144 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAV-LTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPA 144 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCC-CEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccc-eEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHH
Confidence 4567899999999999999999999987554 55555521 0000 0000 000 00
Q ss_pred ------------------------CccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHH
Q 021615 152 ------------------------AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR 207 (310)
Q Consensus 152 ------------------------~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~ 207 (310)
...+...+.+|||||+.+... .......+++.||+++||+|++++.+..+..
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~ 220 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQPCTLGERR 220 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHH
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCccchhHHH
Confidence 000003699999999876421 2334556778999999999999887777766
Q ss_pred HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH----h---HHH----HHH----HHHHh-----------cCCCccccC--
Q 021615 208 TVKEELRMYNPDYLERPFIVVLNKIDLPEAR----D---RLQ----SLT----EEILK-----------IGCDKVTSE-- 259 (310)
Q Consensus 208 ~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~----~---~~~----~l~----~~l~~-----------~g~~~~sa~-- 259 (310)
.|.+.+.. .+.|+++|+||+|+.... + ..+ .+. ..+.. ..+..+|++
T Consensus 221 ~l~~~l~~-----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~a 295 (695)
T 2j69_A 221 YLENYIKG-----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQA 295 (695)
T ss_dssp HHHHHTTT-----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHH
T ss_pred HHHHHHHh-----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHH
Confidence 66545443 367899999999986432 0 111 121 22221 134568999
Q ss_pred ------------ccCCHHHHHHHHhhcc
Q 021615 260 ------------TELSSEDAVKSLSTEG 275 (310)
Q Consensus 260 ------------~~~gi~~l~~~l~~~~ 275 (310)
++.|+.+++..+....
T Consensus 296 l~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 296 LRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 9999999998876544
No 163
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.67 E-value=4.7e-16 Score=147.40 Aligned_cols=163 Identities=17% Similarity=0.149 Sum_probs=97.7
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCCceeeccceEeeC-----------CCCCC--CccC--CCceEEE
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDG-----------DPTLG--AEKY--SSEATLA 162 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i---~~~~~tT~~~~~~~v~~-----------~~~~~--~~~~--~~~~~i~ 162 (310)
...+|+++|.+++|||||+++|++..... ...++.|.......... ....+ +..+ ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 34679999999999999999999764322 22344455432211110 00000 0000 1379999
Q ss_pred eCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH---
Q 021615 163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR--- 238 (310)
Q Consensus 163 DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--- 238 (310)
||||+.++ ...+.+.+..+|++++|+|++++. ..+..+.+ ..+..+ ...|+++|+||+|+.+..
T Consensus 87 DtPGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~l----~~~~iivv~NK~Dl~~~~~~~ 154 (408)
T 1s0u_A 87 DSPGHETL-------MATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MALEIL----GIDKIIIVQNKIDLVDEKQAE 154 (408)
T ss_dssp ECSSHHHH-------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHHHHT----TCCCEEEEEECTTSSCTTTTT
T ss_pred ECCCHHHH-------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHHHHc----CCCeEEEEEEccCCCCHHHHH
Confidence 99998543 345556677889999999999764 33333333 233332 235899999999997643
Q ss_pred hHHHHHHHHHHh-----cCCCccccCccCCHHHHHHHHhhcc
Q 021615 239 DRLQSLTEEILK-----IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 239 ~~~~~l~~~l~~-----~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+..+++.+.+.. ..+.++||+++.|++++++.+....
T Consensus 155 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 155 ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 234555555543 3455689999999999999987644
No 164
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.2e-16 Score=156.71 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=98.5
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCC-------------------------------CCCceeeccceEeeCCC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-------------------------------YPFTTLMPNLGRLDGDP 148 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~-------------------------------~~~tT~~~~~~~v~~~~ 148 (310)
+...+|+++|.+|+|||||+++|++....+.. .+++|.+.....+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45679999999999999999999977543322 14566666655555432
Q ss_pred CCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-------cHHHHHHHHHHHHhcCCCCC
Q 021615 149 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYL 221 (310)
Q Consensus 149 ~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-------~~~~~~~~~~~l~~~~~~~~ 221 (310)
..++||||||+.++ ...+...+..+|++|+|+|++++. ..+..+ ....+.. .
T Consensus 245 --------~~~~iiDTPG~e~f-------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e-~l~~~~~-----l 303 (611)
T 3izq_1 245 --------ANFTIVDAPGHRDF-------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASS-----L 303 (611)
T ss_dssp --------CEEEEEECCSSSCH-------HHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH-HHHHHHT-----T
T ss_pred --------ceEEEEECCCCccc-------HHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHH-HHHHHHH-----c
Confidence 27999999999653 445566778999999999998631 111211 2222222 2
Q ss_pred C-CCEEEEEeCCCCCCc-HhH----HHHHHHHHHhcC-------CCccccCccCCHHHH
Q 021615 222 E-RPFIVVLNKIDLPEA-RDR----LQSLTEEILKIG-------CDKVTSETELSSEDA 267 (310)
Q Consensus 222 ~-~p~ivv~NK~Dl~~~-~~~----~~~l~~~l~~~g-------~~~~sa~~~~gi~~l 267 (310)
+ .|+++|+||+|+.+. ... .+.+...+..++ +..+||++|.|+.++
T Consensus 304 gi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 304 GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred CCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 4 459999999999862 222 233444444444 355899999999865
No 165
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.66 E-value=9.2e-17 Score=150.71 Aligned_cols=118 Identities=33% Similarity=0.618 Sum_probs=70.5
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCC---------CCccCCCceEEEeCCCCC
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLI 168 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~---------~~~~~~~~~~i~DtPG~~ 168 (310)
.++...+|++||.||||||||+|+|++....++++||||..|+.+.+...... +.......+.+|||||+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 34456789999999999999999999998877999999999999988753210 000012258999999999
Q ss_pred ccccCCchHHHHHHHHhhhcCEEEEecccCCC----------CcHHHHHHHHHHHHh
Q 021615 169 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEELRM 215 (310)
Q Consensus 169 ~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~----------~~~~~~~~~~~~l~~ 215 (310)
++++.+.+++..|+.+++.||++++|+|+++. ++..+++.+..+|..
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l 154 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQL 154 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhh
Confidence 98887788888999999999999999999752 556677777666644
No 166
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.66 E-value=5.4e-16 Score=150.07 Aligned_cols=148 Identities=15% Similarity=0.124 Sum_probs=94.7
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP 148 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~ 148 (310)
+...+|+++|.+|+|||||+++|++....+ ....++|.+.....+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 456789999999999999999998652111 1223555555444444332
Q ss_pred CCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcH------HHHHHHHHHHHhcCCCCCC
Q 021615 149 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLE 222 (310)
Q Consensus 149 ~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~------~~~~~~~~~l~~~~~~~~~ 222 (310)
..+.||||||+.++ ...+...+..+|++++|+|++++... .........+... .-
T Consensus 111 --------~~~~iiDTPG~~~f-------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~----~~ 171 (483)
T 3p26_A 111 --------ANFTIVDAPGHRDF-------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL----GI 171 (483)
T ss_dssp --------CEEEEECCCCCGGG-------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT----TC
T ss_pred --------ceEEEEECCCcHHH-------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc----CC
Confidence 27999999999654 45667778899999999999885321 1222222233332 12
Q ss_pred CCEEEEEeCCCCCCc-HhHHH----HHHHHHHhcC-------CCccccCccCCHHH
Q 021615 223 RPFIVVLNKIDLPEA-RDRLQ----SLTEEILKIG-------CDKVTSETELSSED 266 (310)
Q Consensus 223 ~p~ivv~NK~Dl~~~-~~~~~----~l~~~l~~~g-------~~~~sa~~~~gi~~ 266 (310)
.|+++|+||+|+.+. ....+ .+.+.+..++ +.++||+++.|+.+
T Consensus 172 ~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 172 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred CcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 569999999999862 22223 3333444333 35689999999975
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.65 E-value=1.6e-17 Score=160.52 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=102.5
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 180 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~ 180 (310)
+.++|+++|.+|+|||||+++|.+........+++|.+.....+.... ..+++|||||+.++....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--------~~i~~iDTPGhe~f~~~~------ 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--------GMITFLDTPGHAAFTSMR------ 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--------SCCCEECCCTTTCCTTSB------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--------EEEEEEECCCcHHHHHHH------
Confidence 357899999999999999999997654444445666654443333221 278999999998774431
Q ss_pred HHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHHH-------h---
Q 021615 181 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEIL-------K--- 250 (310)
Q Consensus 181 ~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l~-------~--- 250 (310)
.+.+..+|++++|+|+++....+..+.+ ..+.. .+.|+++++||+|+.+... +.+...+. .
T Consensus 69 -~~~~~~aD~aILVVda~~g~~~qT~e~l-~~~~~-----~~vPiIVviNKiDl~~~~~--~~v~~~l~~~~~~~~~~~~ 139 (501)
T 1zo1_I 69 -ARGAQATDIVVLVVAADDGVMPQTIEAI-QHAKA-----AQVPVVVAVNKIDKPEADP--DRVKNELSQYGILPEEWGG 139 (501)
T ss_dssp -CSSSBSCSSEEEEEETTTBSCTTTHHHH-HHHHH-----TTCCEEEEEECSSSSTTCC--CCTTCCCCCCCCCTTCCSS
T ss_pred -HHHHhhCCEEEEEeecccCccHHHHHHH-HHHHh-----cCceEEEEEEeccccccCH--HHHHHHHHHhhhhHHHhCC
Confidence 2446789999999999885444444433 23333 3789999999999975311 01111111 1
Q ss_pred -cCCCccccCccCCHHHHHHHHhhc
Q 021615 251 -IGCDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 251 -~g~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
..+.++||+++.|+.++++.+...
T Consensus 140 ~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 140 ESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp SCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred CccEEEEeeeeccCcchhhhhhhhh
Confidence 235558999999999999998654
No 168
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.65 E-value=3.3e-16 Score=148.33 Aligned_cols=142 Identities=19% Similarity=0.180 Sum_probs=93.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcC---CCC--C-CC-----------CCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHA---KPD--I-AD-----------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~---~~~--i-~~-----------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D 163 (310)
...+|+++|.+|+|||||+++|++. ... . .. ..+.|.......+... ...+.+||
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------~~~~~iiD 81 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA--------KRHYSHVD 81 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS--------SCEEEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC--------CeEEEEEE
Confidence 3468999999999999999999973 110 0 00 1233433322223222 13799999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHH-
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL- 241 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~- 241 (310)
|||+.++ .......+..+|++++|+|+++....+.. .++..+.. .+.| +++|+||+|+.+..+..
T Consensus 82 tpG~~~f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt~-~~l~~~~~-----~~ip~iivviNK~Dl~~~~~~~~ 148 (405)
T 2c78_A 82 CPGHADY-------IKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ-----VGVPYIVVFMNKVDMVDDPELLD 148 (405)
T ss_dssp CCCSGGG-------HHHHHHHHTTCSSEEEEEETTTCCCHHHH-HHHHHHHH-----TTCCCEEEEEECGGGCCCHHHHH
T ss_pred CCChHHH-------HHHHHHHHHHCCEEEEEEECCCCCcHHHH-HHHHHHHH-----cCCCEEEEEEECccccCcHHHHH
Confidence 9999764 34556677899999999999987655543 34455554 3678 88999999998543322
Q ss_pred ---HHHHHHHHhcC-------CCccccCccCC
Q 021615 242 ---QSLTEEILKIG-------CDKVTSETELS 263 (310)
Q Consensus 242 ---~~l~~~l~~~g-------~~~~sa~~~~g 263 (310)
+++.+.+..++ +..+||+++.|
T Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 149 LVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 24445555544 34489999887
No 169
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.65 E-value=7.9e-16 Score=144.01 Aligned_cols=141 Identities=12% Similarity=0.104 Sum_probs=97.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 183 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~ 183 (310)
+|+++|.+|+|||||+++|+. .++|.+.....+.... ..+.+|||||+.++ ......
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~~--------~~i~iiDtPGh~~f-------~~~~~~ 79 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKEG--------RNMVFVDAHSYPKT-------LKSLIT 79 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSSS--------SEEEEEECTTTTTC-------HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecCC--------eEEEEEECCChHHH-------HHHHHH
Confidence 899999999999999999992 2455544444443321 27999999999765 234456
Q ss_pred HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCE-EEEEe-CCCCCCcHh---HHHHHHHHHHhc-----CC
Q 021615 184 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLN-KIDLPEARD---RLQSLTEEILKI-----GC 253 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~-ivv~N-K~Dl~~~~~---~~~~l~~~l~~~-----g~ 253 (310)
.+..+|++++|+| ......+ ...++..+.. .+.|. ++++| |+|+ +... ..+++.+.+... .+
T Consensus 80 ~~~~aD~ailVvd-~~g~~~q-t~e~~~~~~~-----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~i 151 (370)
T 2elf_A 80 ALNISDIAVLCIP-PQGLDAH-TGECIIALDL-----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWEC 151 (370)
T ss_dssp HHHTCSEEEEEEC-TTCCCHH-HHHHHHHHHH-----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEE
T ss_pred HHHHCCEEEEEEc-CCCCcHH-HHHHHHHHHH-----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 6789999999999 6544333 3444445554 36777 89999 9999 5422 123344444333 34
Q ss_pred Cc--cccCc---cCCHHHHHHHHhhcc
Q 021615 254 DK--VTSET---ELSSEDAVKSLSTEG 275 (310)
Q Consensus 254 ~~--~sa~~---~~gi~~l~~~l~~~~ 275 (310)
.+ +||++ +.|++++++.+....
T Consensus 152 i~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 152 ISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp EECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred EecccccccCcCCCCHHHHHHHHHhhc
Confidence 55 89999 999999999886544
No 170
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.65 E-value=9.7e-16 Score=146.38 Aligned_cols=149 Identities=17% Similarity=0.122 Sum_probs=94.9
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-----------CCCCCce----------------------eeccceEeeC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----------ADYPFTT----------------------LMPNLGRLDG 146 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-----------~~~~~tT----------------------~~~~~~~v~~ 146 (310)
+...+|+++|.+|+|||||+++|++....+ +..++|| ++.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 345789999999999999999998764222 1122222 1111111111
Q ss_pred CCCCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCC-CE
Q 021615 147 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER-PF 225 (310)
Q Consensus 147 ~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~-p~ 225 (310)
. ...+.+|||||+.++ ...+...+..+|++++|+|++++...+..+ +...+... +. |+
T Consensus 102 ~--------~~~~~iiDtpGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~-~l~~~~~~-----~~~~i 160 (434)
T 1zun_B 102 A--------KRKFIIADTPGHEQY-------TRNMATGASTCDLAIILVDARYGVQTQTRR-HSYIASLL-----GIKHI 160 (434)
T ss_dssp S--------SEEEEEEECCCSGGG-------HHHHHHHHTTCSEEEEEEETTTCSCHHHHH-HHHHHHHT-----TCCEE
T ss_pred C--------CceEEEEECCChHHH-------HHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHHc-----CCCeE
Confidence 1 126899999998654 335556788999999999999876554433 33344432 34 58
Q ss_pred EEEEeCCCCCCc-HhH----HHHHHHHHHhcC-------CCccccCccCCHHHHHH
Q 021615 226 IVVLNKIDLPEA-RDR----LQSLTEEILKIG-------CDKVTSETELSSEDAVK 269 (310)
Q Consensus 226 ivv~NK~Dl~~~-~~~----~~~l~~~l~~~g-------~~~~sa~~~~gi~~l~~ 269 (310)
++|+||+|+.+. .+. .+++.+.+..++ +.++||+++.|+.+++.
T Consensus 161 IvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 161 VVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp EEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred EEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 999999999863 222 234444455555 34589999999987543
No 171
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.63 E-value=1.1e-15 Score=144.25 Aligned_cols=153 Identities=18% Similarity=0.145 Sum_probs=101.3
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC--C--------------CCCCceeeccceEeeCCCCCCCccCCCceEEEeCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI--A--------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 165 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i--~--------------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtP 165 (310)
..+|+++|.+|+|||||+++|++..... + ...+.|.......+... ...+.+||||
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------~~~~~iiDtp 74 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA--------ARHYAHTDCP 74 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS--------SCEEEEEECS
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC--------CeEEEEEECC
Confidence 3579999999999999999998741100 0 12234444322223221 1379999999
Q ss_pred CCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHH---
Q 021615 166 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL--- 241 (310)
Q Consensus 166 G~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~--- 241 (310)
|+.++ .......+..+|++++|+|+++....+..+.+ ..+.. .+.| +++|+||+|+.+..+..
T Consensus 75 G~~~f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~vp~iivviNK~Dl~~~~~~~~~~ 141 (397)
T 1d2e_A 75 GHADY-------VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-----IGVEHVVVYVNKADAVQDSEMVELV 141 (397)
T ss_dssp SHHHH-------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCCEEEEEECGGGCSCHHHHHHH
T ss_pred ChHHH-------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCeEEEEEECcccCCCHHHHHHH
Confidence 98653 33455667889999999999987666655544 44444 3678 68999999998533322
Q ss_pred -HHHHHHHHhcCC-------CccccCccCC----------HHHHHHHHhhcc
Q 021615 242 -QSLTEEILKIGC-------DKVTSETELS----------SEDAVKSLSTEG 275 (310)
Q Consensus 242 -~~l~~~l~~~g~-------~~~sa~~~~g----------i~~l~~~l~~~~ 275 (310)
+++.+.+..+++ .++||+++.+ +.++++.+....
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 142 ELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 344555555553 4479988764 788888876543
No 172
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.63 E-value=4.5e-16 Score=145.08 Aligned_cols=167 Identities=20% Similarity=0.197 Sum_probs=94.4
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceE-------------eeCCCC---------------
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR-------------LDGDPT--------------- 149 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~-------------v~~~~~--------------- 149 (310)
....++.|+|||.+|||||||+|+|++..........+|..|.... +.....
T Consensus 30 i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 109 (360)
T 3t34_A 30 LWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQD 109 (360)
T ss_dssp --CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHH
Confidence 4456789999999999999999999997642211112222111111 100000
Q ss_pred -----------CCC--------ccCCCceEEEeCCCCCccccC--C----chHHHHHHHHhhhcCEEEEecccCCCCcHH
Q 021615 150 -----------LGA--------EKYSSEATLADLPGLIEGAHL--G----KGLGRNFLRHLRRTRLLVHVIDAAAENPVN 204 (310)
Q Consensus 150 -----------~~~--------~~~~~~~~i~DtPG~~~~~~~--~----~~l~~~~~~~l~~~d~il~VvD~s~~~~~~ 204 (310)
+.. ......+++|||||+.+.... . ..+......++..+|++++|+|.++.....
T Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~ 189 (360)
T 3t34_A 110 ETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT 189 (360)
T ss_dssp HHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG
T ss_pred HHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC
Confidence 000 000126899999999875321 1 223444566788999999999987544322
Q ss_pred HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHHHH-H--hcCCCccccCccCCHHHHH
Q 021615 205 DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTEEI-L--KIGCDKVTSETELSSEDAV 268 (310)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~~l-~--~~g~~~~sa~~~~gi~~l~ 268 (310)
..+...+....+ .+.|+++|+||+|+.+.......+.+.. . ..++..+++..+.++++.+
T Consensus 190 --~~~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~ 252 (360)
T 3t34_A 190 --SDAIKISREVDP--SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNV 252 (360)
T ss_dssp --CHHHHHHHHSCT--TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTC
T ss_pred --HHHHHHHHHhcc--cCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCC
Confidence 122333444433 4689999999999976432211111111 1 2456667777777665543
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=3.7e-15 Score=127.39 Aligned_cols=161 Identities=22% Similarity=0.189 Sum_probs=96.5
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCC--CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC-
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKP--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG- 174 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~--~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~- 174 (310)
......+|+++|++|||||||+|+|++... .+.+.+++|.... .+... ..+.+|||||+.......
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~---------~~~~l~Dt~G~~~~~~~~~ 90 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVA---------DGKRLVDLPGYGYAEVPEE 90 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEE---------TTEEEEECCCCC------C
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEec---------CCEEEEECcCCcccccCHH
Confidence 344556899999999999999999998762 2245556655322 22111 157899999986421100
Q ss_pred --chH---HHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH---HHHHHH
Q 021615 175 --KGL---GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR---LQSLTE 246 (310)
Q Consensus 175 --~~l---~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~l~~ 246 (310)
..+ ...+......++.+++|+|++......+. .+...+.. .+.|.++|.||+|+....+. ...+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~-----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~ 164 (210)
T 1pui_A 91 MKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD-----SNIAVLVLLTKADKLASGARKAQLNMVRE 164 (210)
T ss_dssp CHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH-----TTCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH-----cCCCeEEEEecccCCCchhHHHHHHHHHH
Confidence 011 11223333578999999999876554332 23333433 36899999999999875321 234444
Q ss_pred HHHhcC----CCccccCccCCHHHHHHHHhhcc
Q 021615 247 EILKIG----CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 247 ~l~~~g----~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+...+ ..++|+.++.|+.++++.+....
T Consensus 165 ~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 165 AVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp HHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 444432 34589999999999999986644
No 174
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.62 E-value=2.5e-15 Score=148.39 Aligned_cols=160 Identities=20% Similarity=0.167 Sum_probs=99.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCC------CCC-CCc---cCCCceEEEeCCCCCccc
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD------PTL-GAE---KYSSEATLADLPGLIEGA 171 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~------~~~-~~~---~~~~~~~i~DtPG~~~~~ 171 (310)
.++|+++|.+|+|||||+++|++...........|.......+... ... ... .....+++|||||+.++.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~ 84 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence 4789999999999999999998754211111122322111111100 000 000 001148999999998875
Q ss_pred cCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-------------
Q 021615 172 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR------------- 238 (310)
Q Consensus 172 ~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~------------- 238 (310)
.+.. +.+..||++++|+|++++...+.++.| ..+.. .+.|+++|+||+|+....
T Consensus 85 ~~~~-------r~~~~aD~aILVvDa~~Gv~~qT~e~l-~~l~~-----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa 151 (594)
T 1g7s_A 85 TLRK-------RGGALADLAILIVDINEGFKPQTQEAL-NILRM-----YRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151 (594)
T ss_dssp TSBC-------SSSBSCSEEEEEEETTTCCCHHHHHHH-HHHHH-----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred HHHH-------HHHhhCCEEEEEEECCCCccHhHHHHH-HHHHH-----cCCeEEEEecccccccccccccCCchHHHHH
Confidence 4322 345679999999999987666665554 34444 378999999999996421
Q ss_pred ----h-------HHHHHHHHHHhcC-----------------CCccccCccCCHHHHHHHHhhc
Q 021615 239 ----D-------RLQSLTEEILKIG-----------------CDKVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 239 ----~-------~~~~l~~~l~~~g-----------------~~~~sa~~~~gi~~l~~~l~~~ 274 (310)
. ...++.+.+...+ +..+||+++.|+.++++.+...
T Consensus 152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 0 1122333443333 3448999999999999988653
No 175
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.61 E-value=4.1e-17 Score=161.44 Aligned_cols=145 Identities=20% Similarity=0.236 Sum_probs=76.9
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------CCCCCceeeccceEeeCCC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP 148 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------------~~~~~tT~~~~~~~v~~~~ 148 (310)
+...+|+++|.+|+|||||+++|++....+ ...+++|+......+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 455689999999999999999997432111 0123455544444333221
Q ss_pred CCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-------cHHHHHHHHHHHHhcCCCCC
Q 021615 149 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYL 221 (310)
Q Consensus 149 ~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-------~~~~~~~~~~~l~~~~~~~~ 221 (310)
..+.||||||+.++... ....+..||++|+|||++++. ..+..+.+ ..+.. .
T Consensus 255 --------~~i~iiDTPGh~~f~~~-------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-~~~~~-----l 313 (592)
T 3mca_A 255 --------KIYEIGDAPGHRDFISG-------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-YLLRA-----L 313 (592)
T ss_dssp ------------CCEEESSSEEEEE-------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-HHHHH-----S
T ss_pred --------eEEEEEECCChHHHHHH-------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-HHHHH-----c
Confidence 27899999999876432 123445799999999998642 22222222 23333 3
Q ss_pred CCC-EEEEEeCCCCCC-cHhHH----HHHHHHH-HhcCC-------CccccCccCCHH
Q 021615 222 ERP-FIVVLNKIDLPE-ARDRL----QSLTEEI-LKIGC-------DKVTSETELSSE 265 (310)
Q Consensus 222 ~~p-~ivv~NK~Dl~~-~~~~~----~~l~~~l-~~~g~-------~~~sa~~~~gi~ 265 (310)
+.| +|+|+||+|+.+ ..+.. .++.+.+ ..+++ ..+||++|.|+.
T Consensus 314 gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 314 GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 565 899999999976 22333 3444444 33444 458999999998
No 176
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.60 E-value=5.8e-16 Score=144.05 Aligned_cols=168 Identities=21% Similarity=0.250 Sum_probs=93.4
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCC-----C-CCCCC----------------------ceeeccce-------Eee
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPD-----I-ADYPF----------------------TTLMPNLG-------RLD 145 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~-----i-~~~~~----------------------tT~~~~~~-------~v~ 145 (310)
..++|+|+|.+|||||||+|+|++.+.. + +..|. +|...... .+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998642 1 22232 11110000 000
Q ss_pred C--CCCCCC-------ccCCCceEEEeCCCCCccccC--Cc----hHHHHHHHHhhhc-CEEEEecccCCCCcHHHHHHH
Q 021615 146 G--DPTLGA-------EKYSSEATLADLPGLIEGAHL--GK----GLGRNFLRHLRRT-RLLVHVIDAAAENPVNDYRTV 209 (310)
Q Consensus 146 ~--~~~~~~-------~~~~~~~~i~DtPG~~~~~~~--~~----~l~~~~~~~l~~~-d~il~VvD~s~~~~~~~~~~~ 209 (310)
+ ...... ......+++|||||+.+.... .. .+......++..+ +++++|+|++......+...+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 0 000000 000137999999999764321 11 2333344455444 566667776653333333234
Q ss_pred HHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHH-HHHh--c---CCCccccCccCCHHHHHHHHhh
Q 021615 210 KEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE-EILK--I---GCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 210 ~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~-~l~~--~---g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
.+++. + .+.|+++|+||+|+.+.......+.+ .... . .+..+|++++.|+.++++.+..
T Consensus 190 ~~~~~---~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEVD---P--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHC---T--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHhC---c--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 34443 2 47899999999999764321111111 1111 1 2455899999999999988765
No 177
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.60 E-value=1.8e-15 Score=147.75 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=96.5
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHHcCCCCCC----------------------CCCCceeeccceEeeCCCCCCCccC
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIA----------------------DYPFTTLMPNLGRLDGDPTLGAEKY 155 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~~~~~~i~----------------------~~~~tT~~~~~~~v~~~~~~~~~~~ 155 (310)
..+...+|+++|.+|+|||||+++|+.....+. ...++|.......+.+.
T Consensus 9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-------- 80 (529)
T 2h5e_A 9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH-------- 80 (529)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET--------
T ss_pred hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC--------
Confidence 345668899999999999999999996432110 01122222222223222
Q ss_pred CCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
+..+.+|||||+.++. ....+++..+|++++|+|+++....+. ..++..+.. .+.|+++|+||+|+.
T Consensus 81 ~~~i~liDTPG~~df~-------~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~-----~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFS-------EDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL-----RDTPILTFMNKLDRD 147 (529)
T ss_dssp TEEEEEECCCCSTTCC-------HHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT-----TTCCEEEEEECTTSC
T ss_pred CeEEEEEECCCChhHH-------HHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH-----cCCCEEEEEcCcCCc
Confidence 1279999999997763 245677889999999999998655443 334444433 378999999999998
Q ss_pred CcHh--HHHHHHHHHHh----cCCCccccCccCCHHHHHHHH
Q 021615 236 EARD--RLQSLTEEILK----IGCDKVTSETELSSEDAVKSL 271 (310)
Q Consensus 236 ~~~~--~~~~l~~~l~~----~g~~~~sa~~~~gi~~l~~~l 271 (310)
.... ..+++.+.+.. ..++..|++++.|+.+++...
T Consensus 148 ~~~~~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~ 189 (529)
T 2h5e_A 148 IRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDE 189 (529)
T ss_dssp CSCHHHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTE
T ss_pred cccHHHHHHHHHHHhCCCccceecceecccCcceeeehhhhh
Confidence 6532 23444444321 123335777777877776543
No 178
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.60 E-value=2.5e-15 Score=143.53 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=91.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCCCC-------------------------------CCCCceeeccceEeeCCCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPT 149 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~i~-------------------------------~~~~tT~~~~~~~v~~~~~ 149 (310)
...+|+++|.+|+|||||+++|++....+. ...++|.+.....+....
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~- 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK- 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-
Confidence 346899999999999999999986421110 023455544443443322
Q ss_pred CCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHH-------HHHHHHHHHHhcCCCCCC
Q 021615 150 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVN-------DYRTVKEELRMYNPDYLE 222 (310)
Q Consensus 150 ~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~-------~~~~~~~~l~~~~~~~~~ 222 (310)
..+.+|||||+.++ ...+...+..+|++++|+|+++ .+++ +.......+.. .+
T Consensus 84 -------~~~~iiDtpG~~~f-------~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~-----~~ 143 (435)
T 1jny_A 84 -------YFFTIIDAPGHRDF-------VKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT-----MG 143 (435)
T ss_dssp -------CEEEECCCSSSTTH-------HHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH-----TT
T ss_pred -------eEEEEEECCCcHHH-------HHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH-----cC
Confidence 27999999999765 3355677889999999999998 4333 22222223333 23
Q ss_pred -CCEEEEEeCCCCCCc---Hh----HHHHHHHHHHhcC-------CCccccCccCCHHHHH
Q 021615 223 -RPFIVVLNKIDLPEA---RD----RLQSLTEEILKIG-------CDKVTSETELSSEDAV 268 (310)
Q Consensus 223 -~p~ivv~NK~Dl~~~---~~----~~~~l~~~l~~~g-------~~~~sa~~~~gi~~l~ 268 (310)
.|+++|+||+|+.+. ++ ..+++.+.+..++ +.++||+++.|+.+++
T Consensus 144 ~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 144 LDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp CTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred CCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 468999999999862 22 2345555555555 4458999999987543
No 179
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.59 E-value=2.1e-15 Score=145.03 Aligned_cols=145 Identities=18% Similarity=0.150 Sum_probs=92.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC-----------------CC--------------CCCceeeccceEeeCCCCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI-----------------AD--------------YPFTTLMPNLGRLDGDPTL 150 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-----------------~~--------------~~~tT~~~~~~~v~~~~~~ 150 (310)
..+|+++|.+|+|||||+++|++....+ +. ..++|.+.....+....
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~-- 84 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-- 84 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC--
Confidence 3679999999999999999998641111 00 13445544444443321
Q ss_pred CCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcH-------HHHHHHHHHHHhcCCCCCCC
Q 021615 151 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV-------NDYRTVKEELRMYNPDYLER 223 (310)
Q Consensus 151 ~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~-------~~~~~~~~~l~~~~~~~~~~ 223 (310)
..+.+|||||+.++ .......+..+|++++|+|+++.... +..+.+ ..+.. .+.
T Consensus 85 ------~~~~iiDtPGh~~f-------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~-~~~~~-----~~v 145 (458)
T 1f60_A 85 ------YQVTVIDAPGHRDF-------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT-----LGV 145 (458)
T ss_dssp ------EEEEEEECCCCTTH-------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH-----TTC
T ss_pred ------ceEEEEECCCcHHH-------HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHH-HHHHH-----cCC
Confidence 27999999998643 44566778899999999999864221 222222 22332 356
Q ss_pred C-EEEEEeCCCCCC-cHhHH----HHHHHHHHhcC-------CCccccCccCCHHHH
Q 021615 224 P-FIVVLNKIDLPE-ARDRL----QSLTEEILKIG-------CDKVTSETELSSEDA 267 (310)
Q Consensus 224 p-~ivv~NK~Dl~~-~~~~~----~~l~~~l~~~g-------~~~~sa~~~~gi~~l 267 (310)
| +++|+||+|+.+ ..+.. +++.+.+..++ +.++||+++.|+.++
T Consensus 146 ~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 146 RQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 5 899999999974 22222 33444444444 445899999998643
No 180
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.57 E-value=9.9e-15 Score=143.16 Aligned_cols=133 Identities=21% Similarity=0.320 Sum_probs=85.6
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCC---CCCCCCceeeccceEeeCCC-------C------CCCcc---------
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPD---IADYPFTTLMPNLGRLDGDP-------T------LGAEK--------- 154 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~---i~~~~~tT~~~~~~~v~~~~-------~------~~~~~--------- 154 (310)
...++|+|+|.+|||||||+|+|++.+.. +++.|.||... +...... . .....
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~--~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV--AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE--EEECCSSSEEECCC------------------CCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE--EEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 45689999999999999999999998863 56677665421 1111000 0 00000
Q ss_pred -------CC----CceEEEeCCCCCcccc--CCch--HHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCC
Q 021615 155 -------YS----SEATLADLPGLIEGAH--LGKG--LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD 219 (310)
Q Consensus 155 -------~~----~~~~i~DtPG~~~~~~--~~~~--l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~ 219 (310)
+. ..+++|||||+.+... .... +.......+..+|++++|+|+++.........+.+.+..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---- 216 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---- 216 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence 00 2689999999976321 1121 334445667899999999999875444444555555543
Q ss_pred CCCCCEEEEEeCCCCCCcHh
Q 021615 220 YLERPFIVVLNKIDLPEARD 239 (310)
Q Consensus 220 ~~~~p~ivv~NK~Dl~~~~~ 239 (310)
.+.|+++|+||+|+....+
T Consensus 217 -~~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 217 -HEDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp -CGGGEEEEEECGGGSCHHH
T ss_pred -cCCCEEEEEECCCccCHHH
Confidence 3579999999999987543
No 181
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.57 E-value=1.5e-15 Score=146.32 Aligned_cols=148 Identities=22% Similarity=0.224 Sum_probs=84.0
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------C------CCCCceeeccceEeeCCC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------A------DYPFTTLMPNLGRLDGDP 148 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-------------------------~------~~~~tT~~~~~~~v~~~~ 148 (310)
+...+|+++|.+|+|||||+++|+.....+ . ...++|+......+...
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 455789999999999999999997522111 0 01234444333333322
Q ss_pred CCCCccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCc-------HHHHHHHHHHHHhcCCCCC
Q 021615 149 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMYNPDYL 221 (310)
Q Consensus 149 ~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~-------~~~~~~~~~~l~~~~~~~~ 221 (310)
+..+.+|||||+.++. ..+...+..+|++++|+|+++... .+..+.+ ..+.. .
T Consensus 120 -------~~~~~iiDtPGh~~f~-------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l-~~~~~-----~ 179 (467)
T 1r5b_A 120 -------HRRFSLLDAPGHKGYV-------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART-----Q 179 (467)
T ss_dssp -------SEEEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH-----T
T ss_pred -------CeEEEEEECCCcHHHH-------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHH-HHHHH-----c
Confidence 1378999999997653 244566788999999999987521 1122222 22222 3
Q ss_pred CCC-EEEEEeCCCCCCc---HhH----HHHHHHHHHhc-C--------CCccccCccCCHHHHH
Q 021615 222 ERP-FIVVLNKIDLPEA---RDR----LQSLTEEILKI-G--------CDKVTSETELSSEDAV 268 (310)
Q Consensus 222 ~~p-~ivv~NK~Dl~~~---~~~----~~~l~~~l~~~-g--------~~~~sa~~~~gi~~l~ 268 (310)
+.| +++|+||+|+... .+. .+++.+.+... + +.++|++++.|+.+++
T Consensus 180 ~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 180 GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 677 9999999999642 222 23344444444 3 4458999999988755
No 182
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=4.5e-15 Score=138.48 Aligned_cols=160 Identities=14% Similarity=0.131 Sum_probs=73.6
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCC-------CceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc---
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA--- 171 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~-------~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~--- 171 (310)
.++|+|+|.+|+|||||+|+|++.......+. ..|.......+... ..+ ....+.+|||||+.+..
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~--~~~--~~~~l~i~DTpG~gd~~~~~ 112 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIE--ERG--VKLRLTVVDTPGYGDAINCR 112 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC------C--EEEEEEEEC-----------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEee--cCC--cccceEEEEeccccccCccH
Confidence 36799999999999999999988754332221 12222111111111 011 11268999999995432
Q ss_pred ----cCCchHHHHHHHHhhh-------------cCEEEEecccCCCCcHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615 172 ----HLGKGLGRNFLRHLRR-------------TRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKID 233 (310)
Q Consensus 172 ----~~~~~l~~~~~~~l~~-------------~d~il~VvD~s~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~D 233 (310)
.....+...|..++.. +|+++|+++.+.. ++.... .+.+.+. .+.|+|+|+||+|
T Consensus 113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~-~l~~~d~~~~~~l~------~~~piIlV~NK~D 185 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAIH------NKVNIVPVIAKAD 185 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSS-SCCHHHHHHHHHTC------S-SCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCC-CcchhHHHHHHHhc------cCCCEEEEEECCC
Confidence 1112233333344433 2467888776322 222222 2333332 3689999999999
Q ss_pred CCCcHhHH---HHHHHHHHhc--CCCccccCccCCHHHHHHHHhh
Q 021615 234 LPEARDRL---QSLTEEILKI--GCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 234 l~~~~~~~---~~l~~~l~~~--g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
+....+.. +.+.+.+... .+..+|++++.+ .+.|..+..
T Consensus 186 l~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~ 229 (361)
T 2qag_A 186 TLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTR 229 (361)
T ss_dssp SSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHH
Confidence 98764422 2333333333 455689999888 666655444
No 183
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.56 E-value=2.8e-14 Score=147.86 Aligned_cols=155 Identities=19% Similarity=0.152 Sum_probs=100.1
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCC---C--C-----C------CCCCCceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAK---P--D-----I------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~---~--~-----i------~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D 163 (310)
+...+|+++|.+|+|||||+++|++.. . . . ....+.|.......+... ...+.+||
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~--------~~kI~IID 365 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP--------TRHYAHVD 365 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS--------SCEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC--------CEEEEEEE
Confidence 345789999999999999999998741 0 0 0 112333443332223222 13799999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcHhHH-
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEARDRL- 241 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~- 241 (310)
|||+.++ .......+..+|++|+|+|+++....+..+.+ ..+.. .+.| +++|+||+|+.+..+..
T Consensus 366 TPGHedF-------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL-~ll~~-----lgIP~IIVVINKiDLv~d~e~le 432 (1289)
T 3avx_A 366 CPGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLGRQ-----VGVPYIIVFLNKCDMVDDEELLE 432 (1289)
T ss_dssp CCCHHHH-------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHH-HHHHH-----HTCSCEEEEEECCTTCCCHHHHH
T ss_pred CCChHHH-------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHH-HHHHH-----cCCCeEEEEEeecccccchhhHH
Confidence 9999654 34455667889999999999986554444433 44444 2678 78999999998643322
Q ss_pred ---HHHHHHHHhcC-------CCccccCcc--------CCHHHHHHHHhhcc
Q 021615 242 ---QSLTEEILKIG-------CDKVTSETE--------LSSEDAVKSLSTEG 275 (310)
Q Consensus 242 ---~~l~~~l~~~g-------~~~~sa~~~--------~gi~~l~~~l~~~~ 275 (310)
+++.+.+...+ +.++|++++ .|+.++++.+....
T Consensus 433 ~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 433 LVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 34455555554 345899998 46888888876644
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.55 E-value=3.8e-14 Score=142.58 Aligned_cols=117 Identities=18% Similarity=0.167 Sum_probs=80.1
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCC------C------CC------CCCceeeccceEeeCCCCCCCccCCCceEE
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPD------I------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 161 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~------i------~~------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i 161 (310)
....+|+|+|.+|+|||||+++|+..... + .+ ..++|+......+.+.. ..+++
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--------~~i~l 81 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--------HRINI 81 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--------EEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--------eEEEE
Confidence 44678999999999999999999832110 1 11 22344444444443321 27999
Q ss_pred EeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 162 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 162 ~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
|||||+.++ ...+.+++..+|++++|+|+++....+....|. .+.. .+.|+++|+||+|+...
T Consensus 82 iDTPG~~df-------~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~-----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 82 IDTPGHVDF-------TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK-----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp ECCCSSTTC-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH-----TTCCEEEEEECTTSTTC
T ss_pred EECcCccch-------HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH-----cCCCEEEEEECCCcccC
Confidence 999999765 234567778999999999999988777765554 4444 37899999999999764
No 185
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.55 E-value=7.4e-15 Score=147.75 Aligned_cols=169 Identities=19% Similarity=0.211 Sum_probs=102.4
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCCCC------------------------------
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT------------------------------ 149 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~~~------------------------------ 149 (310)
..+++|+|+|.+|+|||||+|+|++..........+|..|..-.+...+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 45789999999999999999999998743222223443332111100000
Q ss_pred ------CCCc--------cCCCceEEEeCCCCCcccc--CCc----hHHHHHHHHh-hhcCEEEEecccCCCCcHHHHHH
Q 021615 150 ------LGAE--------KYSSEATLADLPGLIEGAH--LGK----GLGRNFLRHL-RRTRLLVHVIDAAAENPVNDYRT 208 (310)
Q Consensus 150 ------~~~~--------~~~~~~~i~DtPG~~~~~~--~~~----~l~~~~~~~l-~~~d~il~VvD~s~~~~~~~~~~ 208 (310)
+... .....++++||||+..... +.. .+......++ ..+|++++|+|++.....++...
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0000 0012588999999987431 111 2333333344 57899999999987554444434
Q ss_pred HHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHHHHH-HHHh--c---CCCccccCccCCHHHHHHHHhh
Q 021615 209 VKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQSLTE-EILK--I---GCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 209 ~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~l~~-~l~~--~---g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
+...+.. .++|+++|+||+|+.+.......+.. .+.. . .+..+||+++.|++++++.+..
T Consensus 209 ll~~L~~-----~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEVDP-----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHCT-----TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHh-----cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 5555543 47899999999999865332222221 0100 1 2445899999999998887765
No 186
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.53 E-value=2.3e-14 Score=134.67 Aligned_cols=100 Identities=33% Similarity=0.534 Sum_probs=81.9
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCC---------CCCccCCCceEEEeCCCCCc
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPT---------LGAEKYSSEATLADLPGLIE 169 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~---------~~~~~~~~~~~i~DtPG~~~ 169 (310)
+...+|+|+|+||||||||+|+|++... .++++||||+.|+.+.+..... .+.......+.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4456899999999999999999999887 6699999999999998865420 00000012479999999999
Q ss_pred cccCCchHHHHHHHHhhhcCEEEEecccCC
Q 021615 170 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAA 199 (310)
Q Consensus 170 ~~~~~~~l~~~~~~~l~~~d~il~VvD~s~ 199 (310)
+++..++++..|+.+++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888888898899999999999999999875
No 187
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.52 E-value=3.7e-14 Score=142.68 Aligned_cols=116 Identities=22% Similarity=0.179 Sum_probs=80.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCCC------------CCC------CCCceeeccceEeeCCCCCCCccCCCceEEE
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKPD------------IAD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 162 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~~------------i~~------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~ 162 (310)
...+|+|+|.+|+|||||+|+|+..... ..+ .+++|+......+.+.. ..+++|
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--------~~i~li 80 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--------HRVNII 80 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--------EEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--------eeEEEE
Confidence 4568999999999999999999842111 111 23445544444444322 279999
Q ss_pred eCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 163 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 163 DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
||||+.++.. .+.++++.+|++++|+|+++....++...| ..+.. .+.|+++|+||+|+...
T Consensus 81 DTPG~~df~~-------~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~-----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 81 DTPGHVDFTV-------EVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT-----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCCCCSSCCH-------HHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH-----TTCCEEEEEECTTSTTC
T ss_pred ECcCCcchHH-------HHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH-----cCCCEEEEEECCCcccc
Confidence 9999987532 445677889999999999987777665554 44554 37899999999999865
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.50 E-value=1.9e-13 Score=133.92 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=87.4
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCCC----------------CC------CCCCCceeeccceEeeCCCCCCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAKP----------------DI------ADYPFTTLMPNLGRLDGDPTLGA 152 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~~----------------~i------~~~~~tT~~~~~~~v~~~~~~~~ 152 (310)
+..+.....+|+|+|...+|||||..+|+-... .+ ...-+.|+......+.+..
T Consensus 24 ~~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~---- 99 (548)
T 3vqt_A 24 LEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD---- 99 (548)
T ss_dssp HHHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT----
T ss_pred hhhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC----
Confidence 444677889999999999999999999962211 11 1122345544444454432
Q ss_pred ccCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 021615 153 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 232 (310)
Q Consensus 153 ~~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~ 232 (310)
..++|+||||+.++.. ...+.++-+|++|+|||+..+...+....| +.+.. .+.|.++++||+
T Consensus 100 ----~~iNlIDTPGHvDF~~-------Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~-----~~lp~i~fINK~ 162 (548)
T 3vqt_A 100 ----RVVNLLDTPGHQDFSE-------DTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM-----RATPVMTFVNKM 162 (548)
T ss_dssp ----EEEEEECCCCGGGCSH-------HHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH-----TTCCEEEEEECT
T ss_pred ----EEEEEEeCCCcHHHHH-------HHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH-----hCCceEEEEecc
Confidence 2799999999998854 556778899999999999998877775555 55555 379999999999
Q ss_pred CCCCc
Q 021615 233 DLPEA 237 (310)
Q Consensus 233 Dl~~~ 237 (310)
|+..+
T Consensus 163 Dr~~a 167 (548)
T 3vqt_A 163 DREAL 167 (548)
T ss_dssp TSCCC
T ss_pred cchhc
Confidence 99865
No 189
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=132.99 Aligned_cols=98 Identities=9% Similarity=0.080 Sum_probs=59.1
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.+.++||||+.... ....+.+|++++|+|++.+...+. +... ..+.|.++|+||+|+.+.
T Consensus 168 ~~iliDT~Gi~~~~----------~~l~~~~d~vl~V~d~~~~~~~~~---i~~~-------il~~~~ivVlNK~Dl~~~ 227 (349)
T 2www_A 168 DIILIETVGVGQSE----------FAVADMVDMFVLLLPPAGGDELQG---IKRG-------IIEMADLVAVTKSDGDLI 227 (349)
T ss_dssp SEEEEECCCC--CH----------HHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGGH
T ss_pred CEEEEECCCcchhh----------hhHHhhCCEEEEEEcCCcchhHHH---hHHH-------HHhcCCEEEEeeecCCCc
Confidence 68999999975321 123468999999999986532221 1111 135688999999999753
Q ss_pred Hh---HHHHHHHHHHh---------cCCCccccCccCCHHHHHHHHhhcc
Q 021615 238 RD---RLQSLTEEILK---------IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 238 ~~---~~~~l~~~l~~---------~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.. ....+...+.. ..+..+|++++.|++++++.+....
T Consensus 228 ~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 228 VPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 22 12233332221 1123489999999999999887654
No 190
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.49 E-value=2.4e-13 Score=136.30 Aligned_cols=116 Identities=23% Similarity=0.182 Sum_probs=79.0
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCCCCC---C---------C------CCCceeeccceEeeCCCCCCCccCCCceE
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI---A---------D------YPFTTLMPNLGRLDGDPTLGAEKYSSEAT 160 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~~~i---~---------~------~~~tT~~~~~~~v~~~~~~~~~~~~~~~~ 160 (310)
.....+|+++|.+|+|||||+++|++....+ + + ..+.|.......+... ...++
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--------~~~~n 77 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--------GHRVF 77 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--------TEEEE
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--------CEEEE
Confidence 3456689999999999999999999543211 0 0 0122332222223222 12789
Q ss_pred EEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 161 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 161 i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
+|||||+.++ .....+.++.+|++++|+|+.+....+.. .++..+.. .+.|+++|+||+|+.
T Consensus 78 liDTpG~~~f-------~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~-----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 78 LLDAPGYGDF-------VGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER-----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEECCCSGGG-------HHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH-----TTCCEEEEEECGGGC
T ss_pred EEeCCCccch-------HHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH-----ccCCEEEEecCCchh
Confidence 9999999765 23456777899999999998876655544 44455554 368999999999987
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.48 E-value=1.1e-13 Score=128.78 Aligned_cols=98 Identities=14% Similarity=0.101 Sum_probs=65.6
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.+.|+||||+.+. ....+..+|++++|+|++..+..+.+ .....+.|.++|+||+|+...
T Consensus 173 ~~iiiDTpGi~~~----------~~~~~~~aD~vl~V~d~~~~~~~~~l----------~~~~~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 173 DVILIETVGVGQS----------EVAVANMVDTFVLLTLARTGDQLQGI----------KKGVLELADIVVVNKADGEHH 232 (355)
T ss_dssp CEEEEEECSCSSH----------HHHHHTTCSEEEEEEESSTTCTTTTC----------CTTSGGGCSEEEEECCCGGGH
T ss_pred CEEEEeCCCCCcH----------HHHHHHhCCEEEEEECCCCCccHHHH----------HHhHhhcCCEEEEECCCCcCh
Confidence 7999999997542 12334789999999998765433211 112235799999999999754
Q ss_pred Hh---HHHHHHHHHHh---------cCCCccccCccCCHHHHHHHHhhcc
Q 021615 238 RD---RLQSLTEEILK---------IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 238 ~~---~~~~l~~~l~~---------~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.. ....+.+.+.. ..+..+||+++.|++++++.+....
T Consensus 233 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 233 KEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 22 12233333322 2245589999999999999886654
No 192
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.47 E-value=3.8e-13 Score=135.49 Aligned_cols=123 Identities=19% Similarity=0.087 Sum_probs=81.2
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC------------CC------CCCceeeccceEeeCCCC-CCCccCCCceE
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI------------AD------YPFTTLMPNLGRLDGDPT-LGAEKYSSEAT 160 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i------------~~------~~~tT~~~~~~~v~~~~~-~~~~~~~~~~~ 160 (310)
...++|+|+|.+|+|||||+++|+.....+ .+ ..+.|.......+.+... .... ...++
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~--~~~i~ 85 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYE--PHRIN 85 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCC--ceeEE
Confidence 446789999999999999999997532111 01 123344333333332210 0011 13799
Q ss_pred EEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 161 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 161 i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
||||||+.++. ....+.++.||++|+|+|+++....+....| ..+.. .+.|+++|+||+|+...
T Consensus 86 liDTPG~~df~-------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~-----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFT-------IEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK-----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchH-------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH-----cCCCEEEEEeCCCcccc
Confidence 99999997752 2445667889999999999987666554444 44443 36899999999999865
No 193
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.44 E-value=1.2e-13 Score=141.72 Aligned_cols=121 Identities=22% Similarity=0.188 Sum_probs=80.9
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC-CC---------------CCCceeeccceEeeCCC----------CCCCc
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-AD---------------YPFTTLMPNLGRLDGDP----------TLGAE 153 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i-~~---------------~~~tT~~~~~~~v~~~~----------~~~~~ 153 (310)
....+|+|+|.+|+|||||+++|+.....+ .. ..+.|+......+.+.. .....
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 345789999999999999999998652211 10 12223332222222210 00111
Q ss_pred cCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 021615 154 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 233 (310)
Q Consensus 154 ~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 233 (310)
...+++|||||+.++.. .+.++++.+|++|+|+|+.++...+....|.... . .+.|+++|+||+|
T Consensus 97 --~~~i~liDTPG~~df~~-------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~-----~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 --SFLINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G-----ERIKPVVVINKVD 161 (842)
T ss_dssp --EEEEEEECCCCCCSSCH-------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H-----TTCEEEEEEECHH
T ss_pred --CceEEEEECcCchhhHH-------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H-----cCCCeEEEEECCC
Confidence 12789999999988643 4456678999999999999988777766555433 3 3689999999999
Q ss_pred CC
Q 021615 234 LP 235 (310)
Q Consensus 234 l~ 235 (310)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 86
No 194
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.43 E-value=4e-13 Score=134.04 Aligned_cols=115 Identities=20% Similarity=0.271 Sum_probs=80.3
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCC------C------CCCC------CceeeccceEeeCCCCCCCccCCCceEEEe
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPD------I------ADYP------FTTLMPNLGRLDGDPTLGAEKYSSEATLAD 163 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~------i------~~~~------~tT~~~~~~~v~~~~~~~~~~~~~~~~i~D 163 (310)
+.+|+|+|...+|||||..+|+..... + .++. +.|+......+.+. +..++++|
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~--------~~~iNlID 73 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE--------NTKVNIID 73 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS--------SCBCCCEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC--------CEEEEEEE
Confidence 567999999999999999999632111 1 1110 12332222222222 13799999
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
|||+.++.. ...+.++-||++|+|||+..+...+....| +.+..+ +.|.++++||+|+...
T Consensus 74 TPGH~DF~~-------Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~-----~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 74 TPGHMDFLA-------EVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM-----GIPTIFFINKIDQNGI 134 (638)
T ss_dssp CCCSSSTHH-------HHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH-----TCSCEECCEECCSSSC
T ss_pred CCCcHHHHH-------HHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc-----CCCeEEEEeccccccC
Confidence 999988743 566788899999999999998777665444 455553 7899999999998754
No 195
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.41 E-value=1.5e-13 Score=127.09 Aligned_cols=98 Identities=9% Similarity=0.105 Sum_probs=61.7
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.+.++||||+.+... .....+|++++|+|++..+..+.+. ... .+.|.++|+||+|+.+.
T Consensus 150 ~i~liDTpG~~~~~~----------~~~~~aD~vl~Vvd~~~~~~~~~l~---~~~-------~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 150 DVVIVETVGVGQSET----------EVARMVDCFISLQIAGGGDDLQGIK---KGL-------MEVADLIVINKDDGDNH 209 (341)
T ss_dssp SEEEEEEECCTTHHH----------HHHTTCSEEEEEECC------CCCC---HHH-------HHHCSEEEECCCCTTCH
T ss_pred CEEEEeCCCccchHH----------HHHHhCCEEEEEEeCCccHHHHHHH---Hhh-------hcccCEEEEECCCCCCh
Confidence 799999999865311 1246899999999997543221111 111 14688999999999864
Q ss_pred HhH---HHHHHHHHHhcC---------CCccccCccCCHHHHHHHHhhcc
Q 021615 238 RDR---LQSLTEEILKIG---------CDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 238 ~~~---~~~l~~~l~~~g---------~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+. .+.+.+.+..++ +..+|++++.|++++++.+....
T Consensus 210 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 210 TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence 321 123443333322 23589999999999999887644
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=3.6e-12 Score=120.73 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=72.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCcee--eccc--eEeeCCCCCCCccCCCceEEEeCCCCCccccCC---c
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNL--GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---K 175 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~--~~~~--~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~---~ 175 (310)
++|+|+|++|||||||+|+|++.......+...+. .+.. ..+..... .......+++|||||+....... .
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q--~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK--EGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--------CEEEEEEECC-----------CH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe--cCCcccceeeeechhhhhhccchhhHH
Confidence 46899999999999999999987642211111100 0111 11111110 01111268999999997542110 1
Q ss_pred hH----HHHHHHHh-------------hhcCEEEEecccC-CCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 176 GL----GRNFLRHL-------------RRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 176 ~l----~~~~~~~l-------------~~~d~il~VvD~s-~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.+ ...+..++ .++++++|+++.+ ......+. .|...|. .+.|+|+|+||+|+...
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L~------~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRLH------EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHHT------TTSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHHh------ccCcEEEEEEcccCccH
Confidence 11 11121111 2345677777765 23323332 3445554 26899999999999875
Q ss_pred HhHH---HHHHHHHHh--cCCCccccCccCCHHHHHHHHhh
Q 021615 238 RDRL---QSLTEEILK--IGCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 238 ~~~~---~~l~~~l~~--~g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
.+.. +.+.+.+.. +.+..+|++++.+++++|..+..
T Consensus 183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 4322 344444444 45666899999999987776654
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.37 E-value=1.8e-12 Score=117.82 Aligned_cols=160 Identities=15% Similarity=0.114 Sum_probs=74.3
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCC------ceee-ccceEeeCCCCCCCccCCCceEEEeCCCCCcccc-
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPF------TTLM-PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH- 172 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i-~~~~~------tT~~-~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~- 172 (310)
.++|+|+|++|||||||+++|++..... ...+. .|.. ...+.+... ......+++|||||+.....
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~-----~~~~~~ltv~Dt~g~~~~~~~ 92 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEE-----RGVKLRLTVVDTPGYGDAINC 92 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC--------CCEEEEEEEEC--------
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecC-----CCcccCcchhhhhhhhhhcCc
Confidence 3578999999999999999998863221 11110 1111 111111100 01123689999999943210
Q ss_pred --CCchHHH-------HHHHHhh----------hcCEEEEecccCC--CCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 021615 173 --LGKGLGR-------NFLRHLR----------RTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 231 (310)
Q Consensus 173 --~~~~l~~-------~~~~~l~----------~~d~il~VvD~s~--~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK 231 (310)
.-..+.. .+.+.+. ++++++|+++.+. .++.. . +.+.... ...|+++|+||
T Consensus 93 ~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~-~----~~l~~l~---~~~~iilV~~K 164 (301)
T 2qnr_A 93 RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-V----AFMKAIH---NKVNIVPVIAK 164 (301)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH-H----HHHHHHT---TTSCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH-H----HHHHHHH---hcCCEEEEEEe
Confidence 0012222 2222221 2345777776543 33322 2 2233322 25789999999
Q ss_pred CCCCCcHhH---HHHHHHHHHhc--CCCccccCccCCHHHHHHHHhhcc
Q 021615 232 IDLPEARDR---LQSLTEEILKI--GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 232 ~Dl~~~~~~---~~~l~~~l~~~--g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+|+....+. .+.+.+.+... .+.++|++++ +++++|..++...
T Consensus 165 ~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 165 ADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence 999865432 23444445544 4566899999 9999998877654
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.37 E-value=1.8e-12 Score=114.67 Aligned_cols=110 Identities=22% Similarity=0.221 Sum_probs=69.7
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHH----HHHHhcCCCCCCCCEEEEEeCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVK----EELRMYNPDYLERPFIVVLNKID 233 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~----~~l~~~~~~~~~~p~ivv~NK~D 233 (310)
.+.+|||||+.+.... ..+...+..++.. +++++|+|++......++.... ..... .+.|+++|+||+|
T Consensus 110 d~iiiDtpG~~~~~~~-~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~-----~~~p~~iv~NK~D 182 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLF-HEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR-----LGATTIPALNKVD 182 (262)
T ss_dssp SEEEEECCSSHHHHHH-SHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH-----HTSCEEEEECCGG
T ss_pred CEEEEeCCCccchhhh-hhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc-----cCCCeEEEEeccc
Confidence 7899999999765322 1234445556666 8999999987644433332221 11111 2689999999999
Q ss_pred CCCcHhHHHHHHH----------H------------------HHh----cCCCccccCccCCHHHHHHHHhhcc
Q 021615 234 LPEARDRLQSLTE----------E------------------ILK----IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 234 l~~~~~~~~~l~~----------~------------------l~~----~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
+....+ .+.+.+ . +.. ..+..+|++++.|+++++..+....
T Consensus 183 ~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 183 LLSEEE-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp GCCHHH-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccccc-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHh
Confidence 986532 111111 1 122 2456699999999999999986543
No 199
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.36 E-value=4.6e-14 Score=132.02 Aligned_cols=120 Identities=24% Similarity=0.211 Sum_probs=83.0
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcC------CCCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHA------KPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 174 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~------~~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~ 174 (310)
...+|+++|.||+|||||+|+|++. ...++++|+||.......+. ..+.++||||+.+.....
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~liDtPG~~~~~~~~ 229 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-----------SGATLYDTPGIINHHQMA 229 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-----------TTCEEEECCSCCCCSSGG
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-----------CCeEEEeCCCcCcHHHHH
Confidence 3468999999999999999999987 34458899999876654432 258999999998764333
Q ss_pred chHHHHHHHHh---hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 175 KGLGRNFLRHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 175 ~~l~~~~~~~l---~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
..+....+.++ .+.+.++|++|+........+.. +..... .+.|+++++||+|....
T Consensus 230 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~--~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 230 HFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKG--GRRSFVCYMANELTVHR 289 (369)
T ss_dssp GGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEES--SSEEEEEEECTTSCEEE
T ss_pred HHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE----EEEccC--CCceEEEEecCCccccc
Confidence 44444555665 77899999999843211111110 111111 35799999999998754
No 200
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.33 E-value=8.9e-13 Score=113.60 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=91.3
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCC-----CC-CCCCCCceeecc------ceEeeCCC--CCCC----------ccC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAK-----PD-IADYPFTTLMPN------LGRLDGDP--TLGA----------EKY 155 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~-----~~-i~~~~~tT~~~~------~~~v~~~~--~~~~----------~~~ 155 (310)
...++|+++|++|||||||+++|++.. .. +...++++.+.. ...+..+. .... ...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 456789999999999999999998652 11 122223322110 00111110 0000 011
Q ss_pred CCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 156 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 156 ~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
...+.+|||+|+...... + . ..++.+++|+|+...... . +..... .+.|.++|+||+|+.
T Consensus 108 ~~d~iiidt~G~~~~~~~-------~--~-~~~~~~i~vvd~~~~~~~--~---~~~~~~-----~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPVD-------F--D-LGENYRVVMVSVTEGDDV--V---EKHPEI-----FRVADLIVINKVALA 167 (221)
T ss_dssp TCSEEEEEEEEBSSGGGG-------C--C-CSCSEEEEEEEGGGCTTH--H---HHCHHH-----HHTCSEEEEECGGGH
T ss_pred CCCEEEEeCCCCCCCCch-------h--c-cccCcEEEEEeCCCcchh--h---hhhhhh-----hhcCCEEEEecccCC
Confidence 237899999996322110 0 0 146789999999875421 1 111111 247899999999986
Q ss_pred CcH-hHHHHHHHHHHhc----CCCccccCccCCHHHHHHHHhhccC
Q 021615 236 EAR-DRLQSLTEEILKI----GCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 236 ~~~-~~~~~l~~~l~~~----g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+.. ...+.+.+.+... .+..+|++++.|+.+++..+.....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 168 EAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp HHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 431 1234444444432 3456899999999999999876553
No 201
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.31 E-value=4.3e-12 Score=117.16 Aligned_cols=98 Identities=10% Similarity=0.145 Sum_probs=58.6
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.+.++||||+.+.. ....+.+|++++|+|++..+..+. +...+ .+.+.++++||+|+...
T Consensus 149 ~~iliDT~Gi~~~~----------~~v~~~~d~vl~v~d~~~~~~~~~---i~~~i-------~~~~~ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 149 DVILVETVGVGQSE----------TAVADLTDFFLVLMLPGAGDELQG---IKKGI-------FELADMIAVNKADDGDG 208 (337)
T ss_dssp CEEEEEECSSSSCH----------HHHHTTSSEEEEEECSCC---------CCTTH-------HHHCSEEEEECCSTTCC
T ss_pred CEEEEECCCCCcch----------hhHHhhCCEEEEEEcCCCcccHHH---HHHHH-------hccccEEEEEchhccCc
Confidence 79999999986531 122368999999999864332111 10011 13466888899997653
Q ss_pred HhHH----HHHHHHHHhc---------CCCccccCccCCHHHHHHHHhhcc
Q 021615 238 RDRL----QSLTEEILKI---------GCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 238 ~~~~----~~l~~~l~~~---------g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
.+.. ..+...+..+ .+..+|+.++.|++++++.+....
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3222 2222222111 223489999999999998886543
No 202
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.30 E-value=2.9e-13 Score=126.47 Aligned_cols=122 Identities=21% Similarity=0.218 Sum_probs=78.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCC-------CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAK-------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL 173 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~-------~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~ 173 (310)
...+|+++|.+|+|||||+|+|++.. ..++++|+||.......+. ..+.++||||+.+....
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~liDtPG~~~~~~~ 227 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-----------EESSLYDTPGIINHHQM 227 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-----------SSCEEEECCCBCCTTSG
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-----------CCeEEEeCCCcCcHHHH
Confidence 34689999999999999999999862 2347899999876554432 15799999999876433
Q ss_pred CchHHHHHHHH---hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh
Q 021615 174 GKGLGRNFLRH---LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD 239 (310)
Q Consensus 174 ~~~l~~~~~~~---l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 239 (310)
...+....+.+ ....+.++|++|.........+.. .+.+.. .+.|+++++||+|.....+
T Consensus 228 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~~-----~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 228 AHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVSG-----GRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp GGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEES-----SSEEEEEEECTTSCEEEEE
T ss_pred HHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-EEEecC-----CCceEEEEecCcccccccc
Confidence 34444455554 356788999999843211111110 011111 3679999999999986533
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.29 E-value=2.3e-11 Score=122.74 Aligned_cols=135 Identities=16% Similarity=0.142 Sum_probs=86.5
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCC------CCC------C------CCCCceeeccceEeeCCCC-CCCccCCCce
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAK------PDI------A------DYPFTTLMPNLGRLDGDPT-LGAEKYSSEA 159 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~------~~i------~------~~~~tT~~~~~~~v~~~~~-~~~~~~~~~~ 159 (310)
+..+.+|+|+|...+|||||..+|+... ..+ . ..-+.|+......+.+... ..... ..+
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~--~~i 87 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDN--YRV 87 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCC--EEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCC--EEE
Confidence 4567789999999999999999986221 111 1 1122333333333332211 01111 279
Q ss_pred EEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH-
Q 021615 160 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR- 238 (310)
Q Consensus 160 ~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~- 238 (310)
+++||||+.++.. ...+.++-||++|+|||+..+...+....|...+.. +.|.++++||+|+...+
T Consensus 88 NlIDTPGHvDF~~-------Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~------~lp~i~~iNKiDr~~a~~ 154 (709)
T 4fn5_A 88 NVIDTPGHVDFTI-------EVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY------GVPRIVYVNKMDRQGANF 154 (709)
T ss_dssp EEECCCSCTTCHH-------HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH------TCCEEEEEECSSSTTCCH
T ss_pred EEEeCCCCcccHH-------HHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEccccccCccH
Confidence 9999999998843 566778899999999999998887776655554443 78999999999998653
Q ss_pred -hHHHHHHHHH
Q 021615 239 -DRLQSLTEEI 248 (310)
Q Consensus 239 -~~~~~l~~~l 248 (310)
...+++.+.+
T Consensus 155 ~~~~~ei~~~l 165 (709)
T 4fn5_A 155 LRVVEQIKKRL 165 (709)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhc
Confidence 2334444443
No 204
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.11 E-value=8.3e-10 Score=98.71 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=76.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCC-C-------CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDI-A-------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 174 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i-~-------~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~ 174 (310)
++++|+|++|||||||+|.|++..... + +.+.++.....+.+.... .+...++++|+||+.......
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~-----~~~~~ltv~d~~~~g~~~~~~ 77 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEG-----GVKMKLTVIDTPGFGDQINNE 77 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC---------CCEEEEECCCC--CCSBCT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecC-----CCcCCceEEechhhhhhcccH
Confidence 579999999999999999999864221 1 111122112222221111 112368999999986532211
Q ss_pred c---hHH----HHHHHHh--------------hhcCEEEEecccC-CCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 021615 175 K---GLG----RNFLRHL--------------RRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 232 (310)
Q Consensus 175 ~---~l~----~~~~~~l--------------~~~d~il~VvD~s-~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~ 232 (310)
. .+. ..+...+ .+++++++++|.. .+....+.+ +.+.|.. ..++++|+||+
T Consensus 78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~-~l~~L~~------~~~vI~Vi~K~ 150 (270)
T 3sop_A 78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLE-FMKHLSK------VVNIIPVIAKA 150 (270)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHH-HHHHHHT------TSEEEEEETTG
T ss_pred HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHH-HHHHHHh------cCcEEEEEecc
Confidence 1 111 1222221 2468889999965 444444433 4455553 37999999999
Q ss_pred CCCCcHhH---HHHHHHHHHhcCCC
Q 021615 233 DLPEARDR---LQSLTEEILKIGCD 254 (310)
Q Consensus 233 Dl~~~~~~---~~~l~~~l~~~g~~ 254 (310)
|.....+. ...+.+.+...++.
T Consensus 151 D~lt~~e~~~~k~~i~~~l~~~~i~ 175 (270)
T 3sop_A 151 DTMTLEEKSEFKQRVRKELEVNGIE 175 (270)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCcc
Confidence 99876442 23344445555443
No 205
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.10 E-value=1.3e-10 Score=106.89 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=53.3
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccC----------CCCcHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFIV 227 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s----------~~~~~~~~~~~~~~l~~~~~~~~~~p~iv 227 (310)
.+.+|||+|+.. ....|..+++.++++|||+|++ +...+.+...|+..+.... ...+.|+++
T Consensus 162 ~l~iwDtaGQe~-------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~-~~~~~piiL 233 (340)
T 4fid_A 162 PFHLIDVGGQRS-------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE-FLKGAVKLI 233 (340)
T ss_dssp EEEEEECCSCHH-------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG-GGTTSEEEE
T ss_pred eeccccCCCccc-------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh-ccCCCeEEE
Confidence 689999999854 3445666788999999999998 4566666666666665421 224689999
Q ss_pred EEeCCCCCC
Q 021615 228 VLNKIDLPE 236 (310)
Q Consensus 228 v~NK~Dl~~ 236 (310)
++||+|+..
T Consensus 234 v~NK~DL~~ 242 (340)
T 4fid_A 234 FLNKMDLFE 242 (340)
T ss_dssp EEECHHHHH
T ss_pred EEECchhhh
Confidence 999999864
No 206
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.01 E-value=2.6e-10 Score=98.33 Aligned_cols=155 Identities=15% Similarity=0.193 Sum_probs=83.8
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCCCC------CCCCCceee--------ccceEeeCCCC--CCC----c------
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKPDI------ADYPFTTLM--------PNLGRLDGDPT--LGA----E------ 153 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~~i------~~~~~tT~~--------~~~~~v~~~~~--~~~----~------ 153 (310)
+..++|+++|.+|||||||+++|+...... ...+.++.+ .....+..... +.. .
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 356899999999999999999998653111 111111100 00011110000 000 0
Q ss_pred cCCCceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 021615 154 KYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKI 232 (310)
Q Consensus 154 ~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~ 232 (310)
.....+.++|++|.+.... .| . ...+.++.|+|+.... ...... .+ .+.|.++|+||+
T Consensus 116 ~~~~d~~~id~~g~i~~~~-------s~-~--~~~~~~~~v~~~~~~~~~~~~~~----~~-------~~~~~iiv~NK~ 174 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA-------DF-D--LGTHKRIVVISTTEGDDTIEKHP----GI-------MKTADLIVINKI 174 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG-------GC-C--CSCSEEEEEEEGGGCTTTTTTCH----HH-------HTTCSEEEEECG
T ss_pred cCCCCEEEEeCCCCccCcc-------hh-h--hccCcEEEEEecCcchhhHhhhh----hH-------hhcCCEEEEecc
Confidence 0012688889988532210 01 0 1235567777754321 111111 11 147889999999
Q ss_pred CCCCcH-hHHHHHHHHHHh----cCCCccccCccCCHHHHHHHHhhcc
Q 021615 233 DLPEAR-DRLQSLTEEILK----IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 233 Dl~~~~-~~~~~l~~~l~~----~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
|+.+.. ...+.+.+.+.. ..+..+|++++.|++++|..+....
T Consensus 175 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 175 DLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp GGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 986432 123444444443 3455689999999999999986543
No 207
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.95 E-value=6e-10 Score=102.08 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=72.9
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccC----------CCCcHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFIV 227 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s----------~~~~~~~~~~~~~~l~~~~~~~~~~p~iv 227 (310)
++.+|||+|+... ...|..+++.+++++||+|.+ +...+.+...+++.+... +...+.|+++
T Consensus 168 ~l~iwDtgGQe~~-------R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~-~~~~~~~iiL 239 (327)
T 3ohm_A 168 IFRMVDVGGQRSE-------RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY-PWFQNSSVIL 239 (327)
T ss_dssp EEEEEEECCSHHH-------HTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS-GGGTTCEEEE
T ss_pred eeEEEEcCCchhH-------HHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh-hccCCceEEE
Confidence 5789999999544 234456778999999999765 445555555566665432 1224689999
Q ss_pred EEeCCCCCCcH-----------------hHHHHH----HHHHHh--------cCCCccccCccCCHHHHHHHHhhcc
Q 021615 228 VLNKIDLPEAR-----------------DRLQSL----TEEILK--------IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 228 v~NK~Dl~~~~-----------------~~~~~l----~~~l~~--------~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
++||+|+.... ...++. ...+.. +.+..+||++..++..+|..+....
T Consensus 240 ~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 240 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp EEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 99999985421 112222 222221 1234589999999999999887654
No 208
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.91 E-value=1.7e-09 Score=97.29 Aligned_cols=61 Identities=26% Similarity=0.400 Sum_probs=38.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCC-CCCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCcccc
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 172 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~-~~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~ 172 (310)
...+|+++|.||||||||+|+|++.. ..+++.|++|.......+ ...+.++||||+.....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtpG~~~~~~ 180 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-----------GKELELLDTPGILWPKF 180 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-----------TTTEEEEECCCCCCSCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-----------CCCEEEEECcCcCCCCC
Confidence 34579999999999999999999987 455889999987654332 12689999999986543
No 209
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.89 E-value=8.6e-09 Score=97.47 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=74.8
Q ss_pred hhhhhhccCe--EEEEcCCCCcHHHHHHHHHcCCCC---CC-CCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCC
Q 021615 95 LELILRVVAD--VGLVGLPNAGKSTLLAAITHAKPD---IA-DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 168 (310)
Q Consensus 95 ~~~~l~~~~~--V~lvG~~naGKSSLln~L~~~~~~---i~-~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~ 168 (310)
+.+.++.+.. ++|+|++|||||||+|.|+|.... +. ..+..+.. ..+.+..... +...++++|+||+.
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~-----l~~~ltv~D~~~~g 106 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESN-----VRLKLTIVSTVGFG 106 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC-------CEEEEEEEEEECCC
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCc-----cccccchhhhhhhh
Confidence 3344455545 999999999999999999997521 11 12233332 2222221111 11268999999986
Q ss_pred ccccCC---c----hHHHHHHHHhh-------------hc--C-EEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCE
Q 021615 169 EGAHLG---K----GLGRNFLRHLR-------------RT--R-LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF 225 (310)
Q Consensus 169 ~~~~~~---~----~l~~~~~~~l~-------------~~--d-~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ 225 (310)
...... . .+...|...+. .+ | +++||+|+..+....+.+ +.+.|. .+.|+
T Consensus 107 ~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Die-ilk~L~------~~~~v 179 (427)
T 2qag_B 107 DQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLV-TMKKLD------SKVNI 179 (427)
T ss_dssp C-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHH-HHHHTC------SCSEE
T ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHH-HHHHHh------hCCCE
Confidence 532100 0 12222222221 11 2 466777877655555543 333332 36899
Q ss_pred EEEEeCCCCCCcHhHHHHHHHHHH
Q 021615 226 IVVLNKIDLPEARDRLQSLTEEIL 249 (310)
Q Consensus 226 ivv~NK~Dl~~~~~~~~~l~~~l~ 249 (310)
|+|+||+|.....+ ...+.+.+.
T Consensus 180 I~Vi~KtD~Lt~~E-~~~l~~~I~ 202 (427)
T 2qag_B 180 IPIIAKADAISKSE-LTKFKIKIT 202 (427)
T ss_dssp EEEESCGGGSCHHH-HHHHHHHHH
T ss_pred EEEEcchhccchHH-HHHHHHHHH
Confidence 99999999987644 344444333
No 210
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.85 E-value=5.9e-09 Score=94.52 Aligned_cols=102 Identities=18% Similarity=0.172 Sum_probs=74.6
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
.+++||| +.++..... .+++.+|++++|+|++++. ++..+..|..++.. .+.|+++|+||+|+.+
T Consensus 64 ~~~iwD~--qer~~~l~~-------~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTK-------PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE--CCCSCEETT-------TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCC
T ss_pred eEEEEEE--ccccceeec-------cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCC
Confidence 6899999 555433222 3577999999999999876 57777778777765 3689999999999986
Q ss_pred cHhH--HHHHHHHHHh-cCCCccccCccCCHHHHHHHHhh
Q 021615 237 ARDR--LQSLTEEILK-IGCDKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 237 ~~~~--~~~l~~~l~~-~g~~~~sa~~~~gi~~l~~~l~~ 273 (310)
..+. .+.+.+.+.. ..+.++||+++.|++++|..+..
T Consensus 130 ~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 130 EDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred chhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 5331 2333333322 45667999999999999988754
No 211
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.82 E-value=7.6e-10 Score=102.63 Aligned_cols=110 Identities=11% Similarity=0.137 Sum_probs=75.7
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCC----------CcHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEELRMYNPDYLERPFIV 227 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~----------~~~~~~~~~~~~l~~~~~~~~~~p~iv 227 (310)
.+.+|||+|+..... .|..+++.++++|||+|+++. ..+.+...|++.+.... ...+.|+++
T Consensus 194 ~l~iwDt~GQe~~r~-------~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~-~~~~~piiL 265 (353)
T 1cip_A 194 HFKMFDVGGQRSERK-------KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK-WFTDTSIIL 265 (353)
T ss_dssp EEEEEEECCSGGGGG-------GGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG-GGTTSEEEE
T ss_pred eEEEEeCCCchhhhH-------HHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc-cccCCcEEE
Confidence 689999999976532 345567899999999999983 45666666666665421 124689999
Q ss_pred EEeCCCCCCcH----------------hHHHHHHHHHH----h---------cCCCccccCccCCHHHHHHHHhhcc
Q 021615 228 VLNKIDLPEAR----------------DRLQSLTEEIL----K---------IGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 228 v~NK~Dl~~~~----------------~~~~~l~~~l~----~---------~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
|+||+|+.... ...++..+.+. . +.+.++||+++.|+.++|..+....
T Consensus 266 v~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 266 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp EEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 99999985211 01222222222 1 2244589999999999999987654
No 212
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.81 E-value=8e-09 Score=101.53 Aligned_cols=67 Identities=25% Similarity=0.183 Sum_probs=46.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCCceeeccceEeeCC-CCCCCccCCCceEEEeCCCCCccc
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-PTLGAEKYSSEATLADLPGLIEGA 171 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~tT~~~~~~~v~~~-~~~~~~~~~~~~~i~DtPG~~~~~ 171 (310)
...|+|+|.||+|||||+|+|++....+ ++++||...+.+.+.+. +... .....+.++||||+.+..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~--~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPK--KPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSS--STTCEEEEEEECCBCCGG
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeeccccc--CCCceEEEecCCCcCccc
Confidence 4679999999999999999999987544 56667765555554210 0000 012379999999998653
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.80 E-value=8.7e-09 Score=99.61 Aligned_cols=161 Identities=15% Similarity=0.136 Sum_probs=85.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHH------cCCCCC-CCCCCce-e---------eccceEeeCCCCCC-----------Cc
Q 021615 102 VADVGLVGLPNAGKSTLLAAIT------HAKPDI-ADYPFTT-L---------MPNLGRLDGDPTLG-----------AE 153 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~------~~~~~i-~~~~~tT-~---------~~~~~~v~~~~~~~-----------~~ 153 (310)
...|+++|.+||||||+++.|. +.++.+ ..-++.. . ......+....... ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999998 555332 1101100 0 00011111000000 00
Q ss_pred cCCCceEEEeCCCCCccccCCchHHHHHHHH--hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCE-EEEEe
Q 021615 154 KYSSEATLADLPGLIEGAHLGKGLGRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLN 230 (310)
Q Consensus 154 ~~~~~~~i~DtPG~~~~~~~~~~l~~~~~~~--l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~-ivv~N 230 (310)
.-...++|+||||..... ..+....... +..+|.+++|+|+..... .... ...+.. ..|+ ++|+|
T Consensus 181 ~~~~DvvIIDTpG~~~~~---~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~-a~~~~~------~~~i~gvVlN 248 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQE---DSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQ-AKAFKD------KVDVASVIVT 248 (504)
T ss_dssp HTTCCEEEEEECCCCTTC---HHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHH-HHHHHH------HHCCCCEEEE
T ss_pred HCCCcEEEEeCCCCcccc---hhHHHHHHHHHhhhcCceEEEEEecccccc--HHHH-HHHHHh------hcCceEEEEe
Confidence 011279999999986531 1222222111 236899999999987532 2222 223332 2464 88999
Q ss_pred CCCCCCcHhHHHHHHHHHHh----cC----------C---CccccCccCC-HHHHHHHHhhc
Q 021615 231 KIDLPEARDRLQSLTEEILK----IG----------C---DKVTSETELS-SEDAVKSLSTE 274 (310)
Q Consensus 231 K~Dl~~~~~~~~~l~~~l~~----~g----------~---~~~sa~~~~g-i~~l~~~l~~~ 274 (310)
|+|..........+...+.. ++ + ..+|+..+.| +.++++.+.+.
T Consensus 249 K~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 249 KLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99987543222222222210 00 1 1158888888 88888887655
No 214
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.74 E-value=8.2e-08 Score=90.59 Aligned_cols=155 Identities=16% Similarity=0.201 Sum_probs=85.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC----CC-CCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCchHH
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKP----DI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 178 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~----~i-~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~l~ 178 (310)
.|+|+|++|||||||+|.|+|... .+ ....-+|.. +.+...+. ...++++|+||+.... .. .
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~---~~v~q~~~------~~~ltv~D~~g~~~~~---~~-~ 137 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME---RHPYKHPN------IPNVVFWDLPGIGSTN---FP-P 137 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC---CEEEECSS------CTTEEEEECCCGGGSS---CC-H
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee---EEeccccc------cCCeeehHhhcccchH---HH-H
Confidence 799999999999999999999532 12 111111211 22221111 1268999999985321 11 2
Q ss_pred HHHHHH--hhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC------------CcHhHHHHH
Q 021615 179 RNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP------------EARDRLQSL 244 (310)
Q Consensus 179 ~~~~~~--l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~------------~~~~~~~~l 244 (310)
..++.. +...+..++ ++... ...+.. .+...+.. .++|+++|.||.|+. ......+.+
T Consensus 138 ~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv-~la~aL~~-----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l 209 (413)
T 1tq4_A 138 DTYLEKMKFYEYDFFII-ISATR-FKKNDI-DIAKAISM-----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI 209 (413)
T ss_dssp HHHHHHTTGGGCSEEEE-EESSC-CCHHHH-HHHHHHHH-----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HHHHHHcCCCccCCeEE-eCCCC-ccHHHH-HHHHHHHh-----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence 233333 344455554 66543 223333 34445544 368999999999875 122222333
Q ss_pred HHHH----HhcCC-----Ccccc--CccCCHHHHHHHHhhccCCcc
Q 021615 245 TEEI----LKIGC-----DKVTS--ETELSSEDAVKSLSTEGGEAD 279 (310)
Q Consensus 245 ~~~l----~~~g~-----~~~sa--~~~~gi~~l~~~l~~~~~~~~ 279 (310)
.+.. ...+. ..+|+ ..+.|++++.+.+...+.+.+
T Consensus 210 ~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 210 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 3322 23221 22577 455569999998877665544
No 215
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.74 E-value=1.9e-09 Score=100.34 Aligned_cols=110 Identities=12% Similarity=0.161 Sum_probs=71.7
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPDYLERPFIV 227 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l~~~~~~~~~~p~iv 227 (310)
.+.+|||+|+.... ..+..+++.++++|||+|+++ ...+.+...|+..+.... ...+.|+++
T Consensus 202 ~l~i~Dt~Gq~~~r-------~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~-~~~~~piIL 273 (362)
T 1zcb_A 202 PFKMVDVGGQRSER-------KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR-VFSNVSIIL 273 (362)
T ss_dssp EEEEEEECC--------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG-GGTTSEEEE
T ss_pred EEEEEeccchhhhh-------hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch-hhCCCCEEE
Confidence 78999999996542 234456789999999999998 456666666776665421 124689999
Q ss_pred EEeCCCCCCcH-----------------hHHHHHHHHH----H---------hcCCCccccCccCCHHHHHHHHhhcc
Q 021615 228 VLNKIDLPEAR-----------------DRLQSLTEEI----L---------KIGCDKVTSETELSSEDAVKSLSTEG 275 (310)
Q Consensus 228 v~NK~Dl~~~~-----------------~~~~~l~~~l----~---------~~g~~~~sa~~~~gi~~l~~~l~~~~ 275 (310)
|+||+|+.... ...++..+.+ . .+.+.++||+++.|+.++|..+....
T Consensus 274 v~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 274 FLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp EEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 99999985211 1122222222 1 12234589999999999999886644
No 216
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.74 E-value=6.6e-09 Score=92.43 Aligned_cols=58 Identities=28% Similarity=0.413 Sum_probs=39.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCCceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 171 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~-~i~~~~~tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~ 171 (310)
.+|+++|.||+|||||+|+|++... .+++.+++|.......+ . ..+.+|||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~---------~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL--E---------NGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC--T---------TSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe--C---------CCEEEEECCCcccCc
Confidence 6899999999999999999999875 45788888876543222 1 268999999998754
No 217
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.64 E-value=1.4e-08 Score=95.42 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=55.3
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCC----------CCcHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPDYLERPFIV 227 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~----------~~~~~~~~~~~~~l~~~~~~~~~~p~iv 227 (310)
.+.+|||+|+..... .+..+++.+++++||+|+++ ..+++....|++++.... ...+.|+++
T Consensus 218 ~l~iwDtaGQe~~r~-------~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~-~~~~~piiL 289 (402)
T 1azs_C 218 NFHMFDVGGQRDERR-------KWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR-WLRTISVIL 289 (402)
T ss_dssp EEEEEEECCSGGGGG-------GGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT-TCSSCCEEE
T ss_pred cceecccchhhhhhh-------hhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc-cCCCCeEEE
Confidence 689999999976532 34456789999999999998 777888888888776532 224689999
Q ss_pred EEeCCCCC
Q 021615 228 VLNKIDLP 235 (310)
Q Consensus 228 v~NK~Dl~ 235 (310)
|+||+|+.
T Consensus 290 vgNK~DL~ 297 (402)
T 1azs_C 290 FLNKQDLL 297 (402)
T ss_dssp EEECHHHH
T ss_pred EEEChhhh
Confidence 99999984
No 218
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.61 E-value=1.1e-08 Score=94.69 Aligned_cols=110 Identities=11% Similarity=0.135 Sum_probs=75.7
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccC----------CCCcHHHHHHHHHHHHhcCCCCCCCCEEE
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFIV 227 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s----------~~~~~~~~~~~~~~l~~~~~~~~~~p~iv 227 (310)
.+.+|||+|+.+... .+..+++.++++++|+|++ +..+++....|++++.... ...+.|+++
T Consensus 184 ~l~iwDtaGQe~~r~-------~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~-~~~~~piiL 255 (354)
T 2xtz_A 184 VYRLFDVGGQRNERR-------KWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEKTSFML 255 (354)
T ss_dssp EEEEEEECCSTTGGG-------GTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG-GGSSCEEEE
T ss_pred eeEEEECCCchhhhH-------HHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc-ccCCCeEEE
Confidence 689999999976533 3345678999999999998 5667777777777776432 124689999
Q ss_pred EEeCCCCCCcH-------------------------hHHHHH-HHHHHh------------cC--CCccccCccCCHHHH
Q 021615 228 VLNKIDLPEAR-------------------------DRLQSL-TEEILK------------IG--CDKVTSETELSSEDA 267 (310)
Q Consensus 228 v~NK~Dl~~~~-------------------------~~~~~l-~~~l~~------------~g--~~~~sa~~~~gi~~l 267 (310)
|+||+|+.... +....+ .+.+.. .. +.++||+++.|+.++
T Consensus 256 vgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~v 335 (354)
T 2xtz_A 256 FLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKT 335 (354)
T ss_dssp EEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHH
T ss_pred EEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHH
Confidence 99999984311 111122 222211 12 356999999999999
Q ss_pred HHHHhhcc
Q 021615 268 VKSLSTEG 275 (310)
Q Consensus 268 ~~~l~~~~ 275 (310)
|..+....
T Consensus 336 F~~v~~~I 343 (354)
T 2xtz_A 336 FKLVDETL 343 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99886644
No 219
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.53 E-value=2.1e-07 Score=92.21 Aligned_cols=76 Identities=21% Similarity=0.337 Sum_probs=40.5
Q ss_pred CceEEEeCCCCCcc--ccCCchHHHHHHHH----hhhc-CEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEE
Q 021615 157 SEATLADLPGLIEG--AHLGKGLGRNFLRH----LRRT-RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL 229 (310)
Q Consensus 157 ~~~~i~DtPG~~~~--~~~~~~l~~~~~~~----l~~~-d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~ 229 (310)
..+.++|.||+... ..++......+... +... .+++.++++...........+..++. + .+.+.|+|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~---~--~g~rtI~Vl 221 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD---P--EGDRTIGIL 221 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC---S--SCCSEEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh---h--cCCceEEEe
Confidence 36899999998763 33344444333332 3332 55666666443222222233333443 2 467899999
Q ss_pred eCCCCCCc
Q 021615 230 NKIDLPEA 237 (310)
Q Consensus 230 NK~Dl~~~ 237 (310)
||.|+...
T Consensus 222 TK~Dlv~~ 229 (608)
T 3szr_A 222 TKPDLVDK 229 (608)
T ss_dssp ECGGGSSS
T ss_pred cchhhcCc
Confidence 99998753
No 220
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.44 E-value=2.4e-07 Score=79.10 Aligned_cols=116 Identities=11% Similarity=-0.025 Sum_probs=63.9
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHh-cCCC--CCCCCEEEEEeCC-C
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM-YNPD--YLERPFIVVLNKI-D 233 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~-~~~~--~~~~p~ivv~NK~-D 233 (310)
++.+.-+||-.+. .-+..+...|..|++.+|++|||||+++....+..+.+ .+|.. .... +.+.|++|++||. |
T Consensus 97 k~~~~~~~~~~~~-GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL-~eL~~mL~ee~~L~gapLLVlANKqqD 174 (227)
T 3l82_B 97 KMFSRHNEGDDQQ-GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQG 174 (227)
T ss_dssp ---------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHH-HHHHHHSCTTSSCSCSCEEEEEEESST
T ss_pred hcccccCCCcccc-CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHH-HHHHHHhcchhhhCCCeEEEEeCCCcC
Confidence 4556666652111 11123444566678899999999999986544322222 22222 2222 3578999999995 7
Q ss_pred CCCcHhHHHHHHHHHH------hcCCCccccCccCCHHHHHHHHhhccC
Q 021615 234 LPEARDRLQSLTEEIL------KIGCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 234 l~~~~~~~~~l~~~l~------~~g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
+..+-. ..++.+.+. ...+..++|.+|+|+.+-+++|+....
T Consensus 175 lp~Ams-~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 175 DVKRMP-CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp TSCBCC-HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred ccCCCC-HHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 765532 344554443 123444899999999999999987664
No 221
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.43 E-value=5.8e-07 Score=81.38 Aligned_cols=85 Identities=16% Similarity=0.146 Sum_probs=64.9
Q ss_pred HhhhcCEEEEecccCCCC-cHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--HHHHHHHHHHhcCC--Ccccc
Q 021615 184 HLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGC--DKVTS 258 (310)
Q Consensus 184 ~l~~~d~il~VvD~s~~~-~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~l~~~l~~~g~--~~~sa 258 (310)
++..+|++++|+|++++. ++..+..|+..+.. .++|.++|+||+|+.+..+ ..+++.+.+...++ ..+||
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA 150 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSA 150 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEEC
Confidence 467899999999999875 66666777776665 4789999999999986542 24455555555554 45899
Q ss_pred CccCCHHHHHHHHhh
Q 021615 259 ETELSSEDAVKSLST 273 (310)
Q Consensus 259 ~~~~gi~~l~~~l~~ 273 (310)
+++.|+++++..+..
T Consensus 151 ~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 151 KTGEGIDELVDYLEG 165 (302)
T ss_dssp TTCTTHHHHHHHTTT
T ss_pred CCCCCHHHHHhhccC
Confidence 999999999988653
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.42 E-value=1.4e-06 Score=82.75 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=54.4
Q ss_pred ceEEEeCCCCCccccCCchHHHHH--HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~--~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.+.|+||||..... ..+-... +..+..+|.+++|+|+.... +... ....+.. .-.+..+|+||+|..
T Consensus 184 DvVIIDTaGrl~~d---~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~-~a~~f~~-----~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 184 DIIIVDTAGRHKED---KALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYN-QALAFKE-----ATPIGSIIVTKLDGS 252 (443)
T ss_dssp SEEEEECCCCSSCC---HHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHH-HHHHHHH-----SCTTEEEEEECCSSC
T ss_pred CEEEEECCCcccch---HHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHH-HHHHHHh-----hCCCeEEEEECCCCc
Confidence 78999999975431 2222221 12234679999999998632 2222 2233332 124567899999987
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSED 266 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~ 266 (310)
.... .........+.+..-..+|+++++
T Consensus 253 ~~gG---~~ls~~~~~g~PI~fig~Ge~vdd 280 (443)
T 3dm5_A 253 AKGG---GALSAVAATGAPIKFIGTGEKIDD 280 (443)
T ss_dssp SSHH---HHHHHHHTTCCCEEEEECSSSTTC
T ss_pred cccc---HHHHHHHHHCCCEEEEEcCCChHH
Confidence 6532 223333455665544556776644
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.39 E-value=3.7e-07 Score=86.73 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=40.2
Q ss_pred ceEEEeCCCCCccccCCchHHHHHH--HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCC-C-EEEEEeCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFL--RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER-P-FIVVLNKID 233 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~--~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~-p-~ivv~NK~D 233 (310)
.+.|+||||..... ..+..... ..+..+|.+++|+|+.... +... . +..+.. .. | ..+|+||+|
T Consensus 182 D~vIIDT~G~~~~~---~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~-~---~~~~~~---~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 182 DVLIIDTAGRHKEE---KGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGI-Q---AKAFKE---AVGEIGSIIVTKLD 249 (432)
T ss_dssp SEEEEECCCSCSSH---HHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHH-H---HHHHHT---TSCSCEEEEEECSS
T ss_pred CEEEEcCCCCcccc---HHHHHHHHHHHHHhcCcceeEEeeccccH--HHHH-H---HHHHhh---cccCCeEEEEeCCC
Confidence 78999999986431 11222211 1123589999999987542 2222 2 222221 34 5 889999999
Q ss_pred CCCc
Q 021615 234 LPEA 237 (310)
Q Consensus 234 l~~~ 237 (310)
....
T Consensus 250 ~~~~ 253 (432)
T 2v3c_C 250 GSAK 253 (432)
T ss_dssp SCST
T ss_pred Cccc
Confidence 8643
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.36 E-value=1.1e-06 Score=78.75 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=67.2
Q ss_pred EEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhH
Q 021615 161 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDR 240 (310)
Q Consensus 161 i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~ 240 (310)
|-+.||+... ..++++++++.+|++++|+|+.++....+. .+..+. .++|.++|+||+|+.+. +.
T Consensus 3 i~w~PGhm~k------a~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-----~l~~~l---~~kp~ilVlNK~DL~~~-~~ 67 (282)
T 1puj_A 3 IQWFPGHMAK------ARREVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDIL---KNKPRIMLLNKADKADA-AV 67 (282)
T ss_dssp ------CTTH------HHHHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHC---SSSCEEEEEECGGGSCH-HH
T ss_pred CcCCchHHHH------HHHHHHHHHhhCCEEEEEEeCCCCCccCCH-----HHHHHH---CCCCEEEEEECcccCCH-HH
Confidence 4567998643 346888999999999999999987655421 122221 37899999999999874 34
Q ss_pred HHHHHHHHHhcCCC--ccccCccCCHHHHHHHHhh
Q 021615 241 LQSLTEEILKIGCD--KVTSETELSSEDAVKSLST 273 (310)
Q Consensus 241 ~~~l~~~l~~~g~~--~~sa~~~~gi~~l~~~l~~ 273 (310)
.+.+.+.+...++. .+|++++.|+.+++..+..
T Consensus 68 ~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~ 102 (282)
T 1puj_A 68 TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKE 102 (282)
T ss_dssp HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHH
Confidence 55666666655554 5899999999998886644
No 225
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.14 E-value=5e-06 Score=79.08 Aligned_cols=69 Identities=16% Similarity=0.080 Sum_probs=43.0
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC---------------CCCCCCCCCceeeccceEeeCCCCC---CCccCCCceEEEe
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA---------------KPDIADYPFTTLMPNLGRLDGDPTL---GAEKYSSEATLAD 163 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~---------------~~~i~~~~~tT~~~~~~~v~~~~~~---~~~~~~~~~~i~D 163 (310)
..-|+|+|.+++|||||+|.|++. ...+-....||...+.|.+-....+ ....-...+.++|
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 345899999999999999999974 2223222235666666665432100 0000012689999
Q ss_pred CCCCCcc
Q 021615 164 LPGLIEG 170 (310)
Q Consensus 164 tPG~~~~ 170 (310)
|||+.+.
T Consensus 147 TeG~~~~ 153 (447)
T 3q5d_A 147 TQGTFDS 153 (447)
T ss_dssp EECCCSS
T ss_pred CCccccc
Confidence 9998654
No 226
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.12 E-value=2.3e-06 Score=76.45 Aligned_cols=100 Identities=11% Similarity=-0.050 Sum_probs=64.9
Q ss_pred chHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHH---HHHHhcCCCCCCCCEEEEEeC-CCCCCcHhHHHHHHHHHH-
Q 021615 175 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVK---EELRMYNPDYLERPFIVVLNK-IDLPEARDRLQSLTEEIL- 249 (310)
Q Consensus 175 ~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~---~~l~~~~~~~~~~p~ivv~NK-~Dl~~~~~~~~~l~~~l~- 249 (310)
..+...|..+++.+|++|||||+++.+..+..+.+. ..+.. ...+.+.|++|++|| .|+..+-. ..++.+.+.
T Consensus 198 ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e-~~~l~~apLLVfANKkQDlp~Ams-~~EI~e~L~L 275 (312)
T 3l2o_B 198 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDP-AFGSSGRPLLVLSCISQGDVKRMP-CFYLAHELHL 275 (312)
T ss_dssp CCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCH-HHHCTTCCEEEEEEESSTTSCBCC-HHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcc-hhhcCCCeEEEEeCCcccccCCCC-HHHHHHHcCC
Confidence 344556667789999999999999876443222221 11211 001247899999996 58876532 344554443
Q ss_pred -----hcCCCccccCccCCHHHHHHHHhhccC
Q 021615 250 -----KIGCDKVTSETELSSEDAVKSLSTEGG 276 (310)
Q Consensus 250 -----~~g~~~~sa~~~~gi~~l~~~l~~~~~ 276 (310)
...+..++|.+|+|+.+-+++|+....
T Consensus 276 ~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 276 NLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp GGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred ccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 122344899999999999999987764
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.11 E-value=1.3e-06 Score=82.81 Aligned_cols=95 Identities=13% Similarity=0.057 Sum_probs=50.3
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHH--HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~--~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.+.|+||||..... ....+...... ..-..+.+++|+|+..... ...+.+.+... -.+..+|+||+|..
T Consensus 181 DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~-----~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 181 DIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQA-----SPIGSVIITKMDGT 251 (433)
T ss_dssp SEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHH-----CSSEEEEEECGGGC
T ss_pred CEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhcc-----cCCcEEEEeccccc
Confidence 68999999974410 11222222211 1224689999999986422 22222333321 24678999999987
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSS 264 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi 264 (310)
..... ........+.+.....+|+++
T Consensus 252 a~~G~---als~~~~~g~Pi~fig~Ge~v 277 (433)
T 3kl4_A 252 AKGGG---ALSAVVATGATIKFIGTGEKI 277 (433)
T ss_dssp SCHHH---HHHHHHHHTCEEEEEECCSSS
T ss_pred ccchH---HHHHHHHHCCCEEEEECCCCh
Confidence 54322 222233345544333345554
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.02 E-value=4.5e-06 Score=73.97 Aligned_cols=94 Identities=27% Similarity=0.281 Sum_probs=64.0
Q ss_pred CCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHhHHHH
Q 021615 164 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARDRLQS 243 (310)
Q Consensus 164 tPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 243 (310)
.||+...+ .++++.++.++|++++|+|+.++...... .+. + . ++|.++|+||+|+.+. +..+.
T Consensus 4 ~PGhm~ka------~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-l---l-~k~~iivlNK~DL~~~-~~~~~ 66 (262)
T 3cnl_A 4 YPGHIEKA------KRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-F---S-RKETIILLNKVDIADE-KTTKK 66 (262)
T ss_dssp -----CCT------THHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-C---T-TSEEEEEEECGGGSCH-HHHHH
T ss_pred CchHHHHH------HHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-h---c-CCCcEEEEECccCCCH-HHHHH
Confidence 47776543 24778889999999999999876554321 111 1 1 6899999999999875 33455
Q ss_pred HHHHHHhcCCC-ccccCccCCHHHHHHHHhhc
Q 021615 244 LTEEILKIGCD-KVTSETELSSEDAVKSLSTE 274 (310)
Q Consensus 244 l~~~l~~~g~~-~~sa~~~~gi~~l~~~l~~~ 274 (310)
+.+.+...++. .+|++++.|+.+++..+...
T Consensus 67 ~~~~~~~~g~~v~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 67 WVEFFKKQGKRVITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp HHHHHHHTTCCEEECCTTSCHHHHHHHHCCCT
T ss_pred HHHHHHHcCCeEEEECCCCcCHHHHHHHHHHh
Confidence 56666554332 78999999999999887543
No 229
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.00 E-value=6.1e-06 Score=76.77 Aligned_cols=86 Identities=17% Similarity=0.298 Sum_probs=59.7
Q ss_pred HHHHHh-hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcH---hHH-HHHHHHHHhcCC-
Q 021615 180 NFLRHL-RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEAR---DRL-QSLTEEILKIGC- 253 (310)
Q Consensus 180 ~~~~~l-~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~-~~l~~~l~~~g~- 253 (310)
.++.++ ++++++++|+|++++.. .|..++..+. .++|+++|+||+|+.+.. +.. +.+.+.+...|+
T Consensus 63 ~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l---~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~ 134 (369)
T 3ec1_A 63 SMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA---ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLC 134 (369)
T ss_dssp HHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC---TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh---CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCC
Confidence 445555 78899999999998552 2333444432 378999999999997652 222 233334566666
Q ss_pred ----CccccCccCCHHHHHHHHhh
Q 021615 254 ----DKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 254 ----~~~sa~~~~gi~~l~~~l~~ 273 (310)
..+||+++.|++++++.+..
T Consensus 135 ~~~v~~iSA~~g~gi~~L~~~I~~ 158 (369)
T 3ec1_A 135 PVDVCLVSAAKGIGMAKVMEAINR 158 (369)
T ss_dssp CSEEEECBTTTTBTHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999998854
No 230
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.98 E-value=7e-06 Score=76.35 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=58.7
Q ss_pred HHHHHh-hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHH-HHHHHHhcCC-
Q 021615 180 NFLRHL-RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQS-LTEEILKIGC- 253 (310)
Q Consensus 180 ~~~~~l-~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~-l~~~l~~~g~- 253 (310)
.+++++ +.++++++|+|++++. ..|..++..+. .++|+++|+||+|+.+... ...+ +...+...++
T Consensus 61 ~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~---~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~ 132 (368)
T 3h2y_A 61 RILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV---GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK 132 (368)
T ss_dssp HHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS---SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh---CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 344554 4566999999998631 34555565553 3789999999999976432 2222 2333455565
Q ss_pred ----CccccCccCCHHHHHHHHhh
Q 021615 254 ----DKVTSETELSSEDAVKSLST 273 (310)
Q Consensus 254 ----~~~sa~~~~gi~~l~~~l~~ 273 (310)
..+||+++.|+++++..+..
T Consensus 133 ~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 133 PEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccEEEEeCCCCcCHHHHHhhhhh
Confidence 35899999999999998854
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.98 E-value=3e-05 Score=69.95 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=52.6
Q ss_pred ceEEEeCCCCCccccCCchHHHHH--HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDL 234 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~--~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl 234 (310)
.+.++||||..... ....+.... ...+..+|.+++|+|+... .+.+..+ +.+.. ..| ..+|+||+|.
T Consensus 182 D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~-~~~~~------~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 182 EIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLA-SKFNQ------ASKIGTIIITKMDG 251 (297)
T ss_dssp SEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHH-HHHHH------TCTTEEEEEECGGG
T ss_pred CEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHH-HHHHh------hCCCCEEEEeCCCC
Confidence 68999999986510 001121111 1234468999999998743 2222222 23322 244 6789999998
Q ss_pred CCcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615 235 PEARDRLQSLTEEILKIGCDKVTSETELSSED 266 (310)
Q Consensus 235 ~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~ 266 (310)
..... .........+.+......|+++++
T Consensus 252 ~~~~g---~~~~~~~~~~~pi~~i~~Ge~v~d 280 (297)
T 1j8m_F 252 TAKGG---GALSAVAATGATIKFIGTGEKIDE 280 (297)
T ss_dssp CTTHH---HHHHHHHTTTCCEEEEECSSSTTC
T ss_pred CcchH---HHHHHHHHHCcCEEEEeCCCChhh
Confidence 65422 233344455555544445666543
No 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.72 E-value=1.5e-05 Score=72.19 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=22.8
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.....++|+|++|||||||+|+|.+..
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 3445679999999999999999999864
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.71 E-value=3.3e-05 Score=70.59 Aligned_cols=95 Identities=17% Similarity=0.131 Sum_probs=50.3
Q ss_pred ceEEEeCCCCCccccCCchHHHHHH--HHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFL--RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~--~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.+.++||+|...... .+...+. ...-..|-.++|+|+.... +.......+... -....+++||.|..
T Consensus 213 d~vliDtaG~~~~~~---~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~-----~~it~iilTKlD~~ 281 (328)
T 3e70_C 213 DVVLIDTAGRSETNR---NLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA-----VKIDGIILTKLDAD 281 (328)
T ss_dssp SEEEEEECCSCCTTT---CHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH-----SCCCEEEEECGGGC
T ss_pred hhhHHhhccchhHHH---HHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh-----cCCCEEEEeCcCCc
Confidence 578899999864322 1222211 1122468899999987642 222222333321 12347888999975
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSSED 266 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~ 266 (310)
..- -.........+.+..-..+|+++++
T Consensus 282 a~~---G~~l~~~~~~~~pi~~i~~Ge~v~d 309 (328)
T 3e70_C 282 ARG---GAALSISYVIDAPILFVGVGQGYDD 309 (328)
T ss_dssp SCC---HHHHHHHHHHTCCEEEEECSSSTTC
T ss_pred cch---hHHHHHHHHHCCCEEEEeCCCCccc
Confidence 432 2233344455655554556666533
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.61 E-value=0.00013 Score=70.03 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=76.2
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCC----CCC---CCCCCce----------eeccceEeeCCCCCCCc--------
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAK----PDI---ADYPFTT----------LMPNLGRLDGDPTLGAE-------- 153 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~----~~i---~~~~~tT----------~~~~~~~v~~~~~~~~~-------- 153 (310)
+....-|+|+|++|||||||++.|.+.. ..+ +.-.+.. ....++.+.........
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~ 369 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQ 369 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHH
Confidence 3444568999999999999999997631 111 1111110 01112222211110000
Q ss_pred ---cCCCceEEEeCCCCCcccc-CCchHHHHHHHHhh-----hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC
Q 021615 154 ---KYSSEATLADLPGLIEGAH-LGKGLGRNFLRHLR-----RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP 224 (310)
Q Consensus 154 ---~~~~~~~i~DtPG~~~~~~-~~~~l~~~~~~~l~-----~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p 224 (310)
.-+..+.++||+|...... .-..+. .+.+.++ ..+-+++|+|+.... ..+..+ ..+... .+ .
T Consensus 370 ~a~~~~~DvVLIDTaGrl~~~~~lm~EL~-kiv~iar~l~~~~P~evLLvLDattGq--~al~~a-k~f~~~----~~-i 440 (503)
T 2yhs_A 370 AAKARNIDVLIADTAGRLQNKSHLMEELK-KIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQA-KLFHEA----VG-L 440 (503)
T ss_dssp HHHHTTCSEEEECCCCSCCCHHHHHHHHH-HHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHH-HHHHHH----TC-C
T ss_pred HHHhcCCCEEEEeCCCccchhhhHHHHHH-HHHHHHHHhccCCCCeeEEEecCcccH--HHHHHH-HHHHhh----cC-C
Confidence 0012688999999854311 001111 1222222 245788899987542 222222 222211 12 2
Q ss_pred EEEEEeCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCHHH
Q 021615 225 FIVVLNKIDLPEARDRLQSLTEEILKIGCDKVTSETELSSED 266 (310)
Q Consensus 225 ~ivv~NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi~~ 266 (310)
..+|+||+|-...- -.+...+..++.+..-..+|.++++
T Consensus 441 tgvIlTKLD~takg---G~~lsi~~~~~~PI~fig~Ge~vdD 479 (503)
T 2yhs_A 441 TGITLTKLDGTAKG---GVIFSVADQFGIPIRYIGVGERIED 479 (503)
T ss_dssp SEEEEECGGGCSCC---THHHHHHHHHCCCEEEEECSSSGGG
T ss_pred CEEEEEcCCCcccc---cHHHHHHHHHCCCEEEEecCCChhh
Confidence 35788999964332 2233344455665555666666644
No 235
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.58 E-value=1.3e-05 Score=67.93 Aligned_cols=43 Identities=26% Similarity=0.437 Sum_probs=33.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCCceeeccceEee
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLD 145 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~-i-~~~~~tT~~~~~~~v~ 145 (310)
.-|+|+|++|||||||+++|.+..+. . ...+.||..|..+.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~ 64 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEED 64 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeec
Confidence 34899999999999999999987652 2 5566788877766543
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.56 E-value=0.00034 Score=62.91 Aligned_cols=93 Identities=11% Similarity=0.058 Sum_probs=49.5
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhh--hcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~--~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.+.|+||||..... ..+...+...+. .++.+++|+|++.. ..++..+. ..+. ..+ ..-+|+||.|..
T Consensus 184 dlvIiDT~G~~~~~---~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~---~~~~--~l~-~~giVltk~D~~ 252 (296)
T 2px0_A 184 DHVFVDTAGRNFKD---PQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIV---KRFS--SVP-VNQYIFTKIDET 252 (296)
T ss_dssp SEEEEECCCCCTTS---HHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHT---TTTS--SSC-CCEEEEECTTTC
T ss_pred CEEEEeCCCCChhh---HHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHH---HHHh--cCC-CCEEEEeCCCcc
Confidence 79999999986431 222222323332 35678889987742 23333332 2222 112 245677999987
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSS 264 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi 264 (310)
.... .....+...+.+..-...|+++
T Consensus 253 ~~~g---~~~~~~~~~~~pi~~i~~ge~v 278 (296)
T 2px0_A 253 TSLG---SVFNILAESKIGVGFMTNGQNV 278 (296)
T ss_dssp SCCH---HHHHHHHTCSCCCSEECCSSCT
T ss_pred cchh---HHHHHHHHHCcCEEEEECCCCC
Confidence 5422 3344455566555444445444
No 237
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.56 E-value=0.00014 Score=65.67 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.6
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
....++++|++|||||||+|.|. ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 34568999999999999999999 54
No 238
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.53 E-value=4.2e-05 Score=70.67 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=23.0
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAKP 127 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~~ 127 (310)
.-.++|+|++|||||||+|.|.+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 44799999999999999999998754
No 239
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.51 E-value=0.00035 Score=58.42 Aligned_cols=85 Identities=9% Similarity=-0.010 Sum_probs=54.4
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEA 237 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 237 (310)
.++|+|||+.... .....+..+|.+++++..+... .....+.+.+........+.++.+|+|++|....
T Consensus 77 D~viiD~~~~~~~---------~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~ 145 (206)
T 4dzz_A 77 DFAIVDGAGSLSV---------ITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT 145 (206)
T ss_dssp SEEEEECCSSSSH---------HHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE
T ss_pred CEEEEECCCCCCH---------HHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch
Confidence 6899999987522 2234456799999999987655 5556666777654322234567899999996533
Q ss_pred HhHHHHHHHHHHhcCCCc
Q 021615 238 RDRLQSLTEEILKIGCDK 255 (310)
Q Consensus 238 ~~~~~~l~~~l~~~g~~~ 255 (310)
. ...+.+.++.++...
T Consensus 146 ~--~~~~~~~l~~~~~~v 161 (206)
T 4dzz_A 146 M--LNVLKESIKDTGVKA 161 (206)
T ss_dssp E--EHHHHHHHHHHTCCB
T ss_pred H--HHHHHHHHHHcCCce
Confidence 1 233444455555443
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.50 E-value=0.00016 Score=65.43 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=20.3
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..-|+++|++|+||||++..|.+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 345889999999999999988753
No 241
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.46 E-value=0.00047 Score=65.30 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=38.6
Q ss_pred ceEEEeCCCCCccccCCchHHHHH--HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDL 234 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~--~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl 234 (310)
.++|+||||..... ..+.... ...+..++.+++|+|+.... +.+... ..+.. ..+ .-+|+||+|.
T Consensus 185 D~VIIDTpG~l~~~---~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~-~~f~~------~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 185 DVLLVDTAGRLHVD---EAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTA-KAFNE------ALPLTGVVLTKVDG 252 (433)
T ss_dssp SEEEEECCCCCTTC---HHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHH-HHHHH------HSCCCCEEEECTTS
T ss_pred CEEEEECCCccccc---HHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHH-HHHhc------cCCCeEEEEecCCC
Confidence 68999999975431 1122221 12234678999999987542 222222 22221 123 3468999998
Q ss_pred CCc
Q 021615 235 PEA 237 (310)
Q Consensus 235 ~~~ 237 (310)
...
T Consensus 253 ~~~ 255 (433)
T 2xxa_A 253 DAR 255 (433)
T ss_dssp SSC
T ss_pred Ccc
Confidence 643
No 242
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.39 E-value=0.00032 Score=63.79 Aligned_cols=93 Identities=13% Similarity=0.052 Sum_probs=49.0
Q ss_pred ceEEEeCCCCCccccCCchHHHH---HHHHh-----hhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEE
Q 021615 158 EATLADLPGLIEGAHLGKGLGRN---FLRHL-----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL 229 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~---~~~~l-----~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~ 229 (310)
.++|+||||...... .+-.. +...+ ..+|.+++|+|+... .+.+... ..+... -...-+|+
T Consensus 193 D~VIIDTpg~l~~~~---~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~----~~~~~~--~~i~GvVl 261 (320)
T 1zu4_A 193 DLLLIDTAGRLQNKT---NLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQA----EEFSKV--ADVSGIIL 261 (320)
T ss_dssp SEEEEECCCCGGGHH---HHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHH----HHHTTT--SCCCEEEE
T ss_pred CEEEEcCCCcccccH---HHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHH----HHHhhc--CCCcEEEE
Confidence 689999999764311 11111 11111 237899999998742 3333332 233221 12345789
Q ss_pred eCCCCCCcHhHHHHHHHHHHhcCCCccccCccCCH
Q 021615 230 NKIDLPEARDRLQSLTEEILKIGCDKVTSETELSS 264 (310)
Q Consensus 230 NK~Dl~~~~~~~~~l~~~l~~~g~~~~sa~~~~gi 264 (310)
||+|...... .........+.+..-...|+.+
T Consensus 262 tk~d~~~~~g---~~~~~~~~~~~Pi~~i~~Ge~~ 293 (320)
T 1zu4_A 262 TKMDSTSKGG---IGLAIKELLNIPIKMIGVGEKV 293 (320)
T ss_dssp ECGGGCSCTT---HHHHHHHHHCCCEEEEECSSST
T ss_pred eCCCCCCchh---HHHHHHHHHCcCEEEEeCCCCc
Confidence 9999754322 2233334455555444455555
No 243
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.38 E-value=0.00021 Score=64.36 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=22.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
....++++|++|||||||+|.|.+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 44568999999999999999999875
No 244
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.32 E-value=0.00053 Score=61.89 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
-.|+++|++|||||||++.|.+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999753
No 245
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.25 E-value=0.00013 Score=61.20 Aligned_cols=43 Identities=33% Similarity=0.479 Sum_probs=34.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCCceeeccceEeeCC
Q 021615 105 VGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLDGD 147 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~~~~~~-i-~~~~~tT~~~~~~~v~~~ 147 (310)
|+|+|++|||||||+++|....+. . -..+.||..|..+..++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~ 48 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGK 48 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCc
Confidence 889999999999999999977653 2 456788888877766543
No 246
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.24 E-value=0.00023 Score=64.41 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=56.0
Q ss_pred hhhcCEEEEecccCCCCcHHH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh---HHHHHHHHHHhcCCC--cccc
Q 021615 185 LRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD---RLQSLTEEILKIGCD--KVTS 258 (310)
Q Consensus 185 l~~~d~il~VvD~s~~~~~~~-~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~l~~~l~~~g~~--~~sa 258 (310)
+.++|.+++|+|+..+..... +..++..... .++|.++|+||+|+.+..+ ..+.+.+.+...|+. .+|+
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~-----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa 158 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA-----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS 158 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT-----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred HHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEec
Confidence 568999999999986554333 2322222222 3789999999999987643 256677777666654 3688
Q ss_pred CccCCHHHHHHHH
Q 021615 259 ETELSSEDAVKSL 271 (310)
Q Consensus 259 ~~~~gi~~l~~~l 271 (310)
.++.|+++++..+
T Consensus 159 ~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 159 KDQDSLADIIPHF 171 (307)
T ss_dssp HHHTTCTTTGGGG
T ss_pred CCCCCHHHHHhhc
Confidence 8888888776653
No 247
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.19 E-value=0.00018 Score=59.52 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCCceeeccceE
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGR 143 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~-i-~~~~~tT~~~~~~~ 143 (310)
-++|+|++|||||||++.|.+..+. . .....||..|..+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge 48 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE 48 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc
Confidence 4899999999999999999986531 2 33445566555443
No 248
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.07 E-value=0.0046 Score=52.27 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=52.2
Q ss_pred ceEEEeCCCC-CccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 021615 158 EATLADLPGL-IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 236 (310)
Q Consensus 158 ~~~i~DtPG~-~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 236 (310)
.++|+|||+. ... .....+..||.+++++..+. ........+.+.+.... +.++.+|+|++|...
T Consensus 69 D~viiD~p~~~~~~---------~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 69 QNIVIDTQARPEDE---------DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG----NNRFRILLTIIPPYP 134 (209)
T ss_dssp SEEEEEEECCCSSS---------HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC----SSSEEEEECSBCCTT
T ss_pred CEEEEeCCCCcCcH---------HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc----CCCEEEEEEecCCcc
Confidence 6899999987 432 22344568999999998764 23344445555665532 456889999999765
Q ss_pred -cHhHHHHHHHHHHhcCCCc
Q 021615 237 -ARDRLQSLTEEILKIGCDK 255 (310)
Q Consensus 237 -~~~~~~~l~~~l~~~g~~~ 255 (310)
.. ..++.+.+++++...
T Consensus 135 ~~~--~~~~~~~l~~~g~~v 152 (209)
T 3cwq_A 135 SKD--GDEARQLLTTAGLPL 152 (209)
T ss_dssp SCH--HHHHHHHHHHTTCCB
T ss_pred chH--HHHHHHHHHHcCCch
Confidence 32 244555555565443
No 249
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.02 E-value=0.0013 Score=59.07 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=45.9
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHH--HhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~--~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.+.|+||||..... ......+.. ..-.+|.+++|+|+... .+.+..+ +.+.. . -...-+|+||+|..
T Consensus 182 D~viiDtpp~~~~d---~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~-~~~~~---~--~~i~givlnk~d~~ 250 (295)
T 1ls1_A 182 DLILVDTAGRLQID---EPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVA-RAFDE---K--VGVTGLVLTKLDGD 250 (295)
T ss_dssp CEEEEECCCCSSCC---HHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHH-HHHHH---H--TCCCEEEEECGGGC
T ss_pred CEEEEeCCCCcccc---HHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHH-HHHhh---c--CCCCEEEEECCCCC
Confidence 78999999875321 111112111 12257888999998742 3333322 22221 0 12345789999976
Q ss_pred CcHhHHHHHHHHHHhcCCCccccCccCCH
Q 021615 236 EARDRLQSLTEEILKIGCDKVTSETELSS 264 (310)
Q Consensus 236 ~~~~~~~~l~~~l~~~g~~~~sa~~~~gi 264 (310)
.... .........+.+..-...|+.+
T Consensus 251 ~~~g---~~~~~~~~~~~pi~~i~~g~~~ 276 (295)
T 1ls1_A 251 ARGG---AALSARHVTGKPIYFAGVSEKP 276 (295)
T ss_dssp SSCH---HHHHHHHHHCCCEEEEC-----
T ss_pred ccHH---HHHHHHHHHCcCEEEEeCCCCc
Confidence 5322 2333444556655444455544
No 250
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.98 E-value=0.0021 Score=59.19 Aligned_cols=81 Identities=21% Similarity=0.133 Sum_probs=52.5
Q ss_pred hhhcCEEEEecccCCCCcHH-HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcHh--HHHHHHHHHHhcCCCc--cccC
Q 021615 185 LRRTRLLVHVIDAAAENPVN-DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEARD--RLQSLTEEILKIGCDK--VTSE 259 (310)
Q Consensus 185 l~~~d~il~VvD~s~~~~~~-~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~l~~~l~~~g~~~--~sa~ 259 (310)
+.++|.+++| |+..+.... .++.++-.... .++|.++|+||+|+.+..+ ..+.+...+...|+.. +|+.
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~-----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCET-----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH 201 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHH-----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHh-----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence 4688999976 444443322 22222211122 3678899999999987543 2455666677666654 7999
Q ss_pred ccCCHHHHHHHH
Q 021615 260 TELSSEDAVKSL 271 (310)
Q Consensus 260 ~~~gi~~l~~~l 271 (310)
++.|+.++...+
T Consensus 202 ~~~gl~~L~~~~ 213 (358)
T 2rcn_A 202 TQDGLKPLEEAL 213 (358)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHHhc
Confidence 999999988764
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.94 E-value=0.0004 Score=58.46 Aligned_cols=24 Identities=42% Similarity=0.465 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
..++|+|++|||||||++.|.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 459999999999999999998754
No 252
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.94 E-value=0.00044 Score=57.36 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+++|+|++|||||||++.|.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.93 E-value=0.00041 Score=59.30 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=23.3
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|||||||++.|.+..
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34455556679999999999999999999865
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.87 E-value=0.00055 Score=59.39 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=26.3
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34455555679999999999999999999875
No 255
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.83 E-value=0.00059 Score=58.72 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=26.4
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44455566679999999999999999999874
No 256
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.82 E-value=0.0007 Score=57.32 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCCceeeccce
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLG 142 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~~-i-~~~~~tT~~~~~~ 142 (310)
-|+|+|++|||||||++.|.+..+. . .....+|..+..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~ 50 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREG 50 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCc
Confidence 4899999999999999999987542 2 3344455554443
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.75 E-value=0.00076 Score=56.34 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
..-|+|+|++|||||||++.|.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3458999999999999999999864
No 258
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.75 E-value=0.0036 Score=59.05 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=38.0
Q ss_pred ceEEEeCCCCCccccCCchHHHHH--HHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 235 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~--~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~ 235 (310)
.+.|+||||..... ..+.... ...+-.+|.+++|+|+... .+.+..+ ..+.. . . ...-+|+||+|..
T Consensus 182 DvVIIDTaG~l~~d---~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a-~~f~~---~-l-~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 182 DLILVDTAGRLQID---EPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVA-RAFDE---K-V-GVTGLVLTKLDGD 250 (425)
T ss_dssp SEEEEECCCCSSCC---HHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHH-HHHHH---H-T-CCCEEEEESGGGC
T ss_pred CEEEEcCCCccccc---HHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHH-HHHHh---c-C-CceEEEEeCcCCc
Confidence 68999999975431 2222221 1122358899999998753 2222222 22221 0 1 2356789999975
Q ss_pred Cc
Q 021615 236 EA 237 (310)
Q Consensus 236 ~~ 237 (310)
..
T Consensus 251 ~~ 252 (425)
T 2ffh_A 251 AR 252 (425)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 259
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.74 E-value=0.0008 Score=59.13 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=27.2
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555666679999999999999999999875
No 260
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.73 E-value=0.0008 Score=58.43 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=26.9
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...-.++|+|++|||||||++.|.+..
T Consensus 23 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 23 GITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344455566679999999999999999999874
No 261
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.73 E-value=0.00081 Score=59.81 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=27.3
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.++..-.++|+|++|||||||++.|.|-.
T Consensus 26 ~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 26 GINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 444556666679999999999999999999864
No 262
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.73 E-value=0.00079 Score=57.59 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=27.1
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...-.++|+|++|||||||++.|.|..
T Consensus 27 ~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344555666679999999999999999999874
No 263
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.73 E-value=0.00084 Score=59.22 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=26.5
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...--++|+|++|||||||++.|.|-.
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44555566679999999999999999999874
No 264
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.72 E-value=0.00094 Score=58.12 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=27.1
Q ss_pred eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
..+.+.+.. -.++|+|++|||||||++.|.|-.
T Consensus 16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555666 679999999999999999999874
No 265
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.71 E-value=0.00084 Score=58.67 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=27.5
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...-.++|+|++|||||||++.|.+-.
T Consensus 27 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 27 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344556666679999999999999999999874
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.71 E-value=0.00087 Score=57.86 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=27.1
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...-.++|+|++|||||||++.|.|..
T Consensus 26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555666679999999999999999999874
No 267
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.70 E-value=0.0007 Score=58.09 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.0
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAKP 127 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~~ 127 (310)
..--++|+|++|||||||++.|.+..+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 334589999999999999999998754
No 268
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.69 E-value=0.00082 Score=59.45 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=27.0
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus 29 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 29 DVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344555566679999999999999999999875
No 269
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.69 E-value=0.00092 Score=59.02 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=27.2
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus 42 ~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 344556666679999999999999999999874
No 270
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.67 E-value=0.00093 Score=58.08 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=26.4
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455556679999999999999999999874
No 271
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.65 E-value=0.00099 Score=56.22 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=23.0
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCCC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAKP 127 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~~ 127 (310)
...--++|+|++|||||||++.|.+..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3344589999999999999999998753
No 272
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.64 E-value=0.00086 Score=55.60 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 021615 105 VGLVGLPNAGKSTLLAAITHAKP 127 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~~~~~ 127 (310)
++|+|++|||||||++.|.+..+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999997653
No 273
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.64 E-value=0.001 Score=59.30 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=27.3
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...-.++|+|++|||||||++.|.|..
T Consensus 39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344555666679999999999999999999875
No 274
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.63 E-value=0.0011 Score=58.33 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=27.1
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus 33 ~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344555666679999999999999999999874
No 275
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.61 E-value=0.0011 Score=58.76 Aligned_cols=32 Identities=31% Similarity=0.303 Sum_probs=26.5
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44455556679999999999999999999875
No 276
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.60 E-value=0.00097 Score=54.20 Aligned_cols=27 Identities=30% Similarity=0.206 Sum_probs=23.3
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+..--++|+|+.|||||||++.|.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444569999999999999999999865
No 277
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.59 E-value=0.00083 Score=60.68 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=28.3
Q ss_pred eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
..+.+.++..-.++|+|++|||||||++.|.+-.
T Consensus 71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred eeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3455566677789999999999999999999864
No 278
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.59 E-value=0.0011 Score=58.00 Aligned_cols=32 Identities=41% Similarity=0.376 Sum_probs=26.4
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|||||||++.|.|..
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34455566679999999999999999999874
No 279
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.56 E-value=0.0012 Score=54.53 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|+|++|||||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999975
No 280
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.56 E-value=0.0012 Score=59.51 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=25.9
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
+.+.++..-.++|+|++|+|||||++.|.+-
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3455566678999999999999999999865
No 281
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.53 E-value=0.0013 Score=57.99 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=26.1
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34455555679999999999999999999875
No 282
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.50 E-value=0.00093 Score=56.22 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.-|+|+|++|||||||.+.|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 448999999999999999998654
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.50 E-value=0.00086 Score=58.38 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=26.3
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34455555679999999999999999999874
No 284
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.48 E-value=0.0015 Score=54.62 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=22.5
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
....|+|+|++||||||+++.|.+.-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34469999999999999999998864
No 285
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.48 E-value=0.0012 Score=55.84 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|++|||||||++.|.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999875
No 286
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.47 E-value=0.0011 Score=57.92 Aligned_cols=31 Identities=29% Similarity=0.299 Sum_probs=25.9
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
+.+.+...-.++|+|++|||||||++.|.|-
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445556667999999999999999999985
No 287
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.46 E-value=0.0012 Score=58.41 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=26.5
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.+.+.+...-.++|+|++|||||||++.|.|-
T Consensus 38 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 38 GLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34455566667999999999999999999986
No 288
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.46 E-value=0.0017 Score=59.99 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=26.5
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...--++|+|++|||||||++.|.+-.
T Consensus 47 vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 47 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 44455556679999999999999999999875
No 289
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.44 E-value=0.0011 Score=58.38 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=27.1
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...-.++|+|++|||||||++.|.+-.
T Consensus 38 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 38 SINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344555666679999999999999999999864
No 290
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.39 E-value=0.00094 Score=54.69 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=18.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAIT 123 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~ 123 (310)
.--++++|++|||||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3348999999999999999865
No 291
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.38 E-value=0.0019 Score=59.54 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=26.9
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...--++|+|++|||||||++.|.|-.
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344555555669999999999999999999975
No 292
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.35 E-value=0.0013 Score=57.68 Aligned_cols=32 Identities=28% Similarity=0.315 Sum_probs=26.3
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+...-.++|+|++|||||||++.|.|-.
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455555679999999999999999999875
No 293
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.34 E-value=0.00087 Score=57.51 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=18.2
Q ss_pred hhhccCeEEEEcCCCCcHHHHHHHHH-cCC
Q 021615 98 ILRVVADVGLVGLPNAGKSTLLAAIT-HAK 126 (310)
Q Consensus 98 ~l~~~~~V~lvG~~naGKSSLln~L~-~~~ 126 (310)
.++...-++|+|++|||||||++.|. +..
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34445569999999999999999999 764
No 294
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.34 E-value=0.002 Score=57.65 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=27.2
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...-.++|+|++|||||||++.|.|..
T Consensus 56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344555666679999999999999999999874
No 295
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.29 E-value=0.0022 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|++|||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999875
No 296
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.28 E-value=0.0024 Score=58.84 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=27.5
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...--++|+|++|||||||++.|.|-.
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 445556666679999999999999999999875
No 297
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.28 E-value=0.0024 Score=58.86 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=26.9
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...--++|+|++|||||||++.|.|-.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 344555556679999999999999999999875
No 298
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.28 E-value=0.0025 Score=59.22 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=27.0
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...--++|+|++|||||||++.|.|-.
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 344555556669999999999999999999875
No 299
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.25 E-value=0.0026 Score=58.70 Aligned_cols=33 Identities=30% Similarity=0.371 Sum_probs=27.1
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...--++|+|++|||||||++.|.|-.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344555566679999999999999999999875
No 300
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.23 E-value=0.0017 Score=57.31 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=26.5
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+. .-.++|+|++|||||||++.|.|..
T Consensus 23 ~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 23 NINLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3445566 6679999999999999999999864
No 301
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.22 E-value=0.0026 Score=53.18 Aligned_cols=31 Identities=29% Similarity=0.294 Sum_probs=22.2
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
+.+.+.....|+|+|++||||||+.+.|...
T Consensus 18 ~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 18 LYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred eeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445556668999999999999999999753
No 302
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.21 E-value=0.0028 Score=58.72 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=27.0
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...--++|+|++|||||||++.|.|-.
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344555556679999999999999999999875
No 303
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.21 E-value=0.0022 Score=55.61 Aligned_cols=31 Identities=26% Similarity=0.196 Sum_probs=23.0
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
+.+.+....-|+|+|++|||||||++.|.+.
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4455556667999999999999999999874
No 304
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.20 E-value=0.0023 Score=52.81 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 021615 104 DVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~ 124 (310)
-++|+|++|||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999986
No 305
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.19 E-value=0.0022 Score=53.90 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|+|++|||||||++.|.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999875
No 306
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.18 E-value=0.0018 Score=55.11 Aligned_cols=26 Identities=23% Similarity=0.082 Sum_probs=22.7
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...-.++|+|++|||||||++.|.+.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44456999999999999999999986
No 307
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.18 E-value=0.0029 Score=58.68 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=26.8
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...--++|+|++|||||||++.|.|-.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 344455555669999999999999999999875
No 308
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.18 E-value=0.0029 Score=58.39 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=28.1
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.++..-.++|+|++|||||||++.|.+..
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 345566777889999999999999999999864
No 309
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.15 E-value=0.024 Score=50.48 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=41.7
Q ss_pred ceEEEeCCCCCccccCCchHHHHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCC
Q 021615 158 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDL 234 (310)
Q Consensus 158 ~~~i~DtPG~~~~~~~~~~l~~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~~~~~~~~p~i-vv~NK~Dl 234 (310)
.++|+|||+...... +...+..||.+++|++.+. ........+.+.+..... ..+.+++ +|+|+++.
T Consensus 158 D~ViiD~p~~~~~~~--------~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~-~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 158 DVVIFDVLGDVVCGG--------FAAPLQHADQAVVVTANDF-DSIYAMNRIIAAVQAKSK-NYKVRLAGCVANRSRA 225 (307)
T ss_dssp SEEEEEECCSSCCGG--------GGGGGGTCSEEEEEECSSH-HHHHHHHHHHHHHHTTTT-TCCCEEEEEEEESCSC
T ss_pred CEEEEeCCCccchHH--------HHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhhh-cCCCceEEEEEecCCc
Confidence 689999988654211 1233567999999998653 334445555666665421 1244544 89999984
No 310
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.14 E-value=0.017 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAIT 123 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~ 123 (310)
..-|+|+|.+++|||+|+|.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 4458899999999999999665
No 311
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.13 E-value=0.0025 Score=58.58 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=27.4
Q ss_pred eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
..+.+.+...--++|+|++|||||||++.|.|-.
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3444555566679999999999999999999875
No 312
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.12 E-value=0.0032 Score=51.95 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.3
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.+-++++|++|+|||||+++|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 456899999999999999999864
No 313
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.11 E-value=0.0026 Score=55.96 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
-.++|+|++|||||||++.|.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 35999999999999999999875
No 314
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.08 E-value=0.0029 Score=52.90 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.++++|++|+|||||++.|.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999998753
No 315
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.07 E-value=0.0034 Score=52.48 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|++|||||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 45999999999999999999864
No 316
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.06 E-value=0.0029 Score=57.67 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=27.2
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.++..-.++|+|++|||||||++.|.+.-
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44556667789999999999999999999874
No 317
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.04 E-value=0.0022 Score=59.03 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=26.8
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+...--++|+|++|||||||++.|.|-.
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344455555679999999999999999999875
No 318
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.96 E-value=0.0021 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|++|+|||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 319
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.95 E-value=0.0038 Score=54.01 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAIT 123 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~ 123 (310)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999999
No 320
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.93 E-value=0.0042 Score=52.65 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 321
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.92 E-value=0.0035 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
--++|+|++|||||||++.|.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999999874
No 322
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.89 E-value=0.0037 Score=56.49 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.7
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...-|+|+|++|||||||++.|.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3446999999999999999999875
No 323
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.87 E-value=0.0042 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=20.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHH
Q 021615 101 VVADVGLVGLPNAGKSTLLAAIT 123 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~ 123 (310)
..--++|+|++|||||||++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34458999999999999999988
No 324
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.87 E-value=0.0012 Score=62.97 Aligned_cols=105 Identities=15% Similarity=0.014 Sum_probs=52.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCCCCCCCCCC-ceeeccceEeeCCCCCCCccCCCceEEEeCCCCCccccCCch---HH
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG---LG 178 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~~~i~~~~~-tT~~~~~~~v~~~~~~~~~~~~~~~~i~DtPG~~~~~~~~~~---l~ 178 (310)
..|+++|.||+||||+.+.|...-. +.+ .|...+...+.... .+ . .....+||+.|.......... ..
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~----~~~~~t~~~~~d~~r~~~-~g-~--~~~~~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN----FIGVPTREFNVGQYRRDM-VK-T--YKSFEFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH----HTTCCEEEEEHHHHHHHH-HC-S--CCCGGGGCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh----ccCCCceEEecchhhhhh-cc-C--CCcccccCCCCHHHHHHHHHHHHHHH
Confidence 4699999999999999999975421 011 11111100000000 00 0 002345777775211000000 00
Q ss_pred HHHHHHhhhcCEEEEecccCCCCcHHHHHHHHHHHHhc
Q 021615 179 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY 216 (310)
Q Consensus 179 ~~~~~~l~~~d~il~VvD~s~~~~~~~~~~~~~~l~~~ 216 (310)
.....++..+++.++|+|+++. ..+....|.+.++..
T Consensus 112 ~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 112 NDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 0113344457888999999886 455556666666653
No 325
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.86 E-value=0.0042 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|+|++||||||+.+.|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4899999999999999999764
No 326
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0042 Score=59.24 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=27.2
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.++....|+|+|++|||||||++.|.+..
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45566677889999999999999999998753
No 327
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.84 E-value=0.0043 Score=60.84 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=28.8
Q ss_pred eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
..+.+.++..-.++++|++|+|||||++.|.+-.
T Consensus 360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3455667777789999999999999999999874
No 328
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.81 E-value=0.0038 Score=57.50 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
..+++|+|++|||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 6689999999999999999999864
No 329
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.79 E-value=0.0049 Score=51.50 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-|+|+|++|||||||.+.|.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 330
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.78 E-value=0.0037 Score=58.33 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=27.8
Q ss_pred eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
..+.+.++..-.++|+|++|||||||++.|.|-.
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3445566666679999999999999999999864
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.78 E-value=0.0051 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~ 124 (310)
..|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 332
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.78 E-value=0.0049 Score=60.49 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=27.9
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.++..-.++++|++|+|||||++.|.+-.
T Consensus 361 ~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445566677789999999999999999999864
No 333
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.74 E-value=0.0054 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.141 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|+|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 334
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.74 E-value=0.0055 Score=59.21 Aligned_cols=32 Identities=31% Similarity=0.235 Sum_probs=26.4
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.++....++|+|++|||||||+++|++.-
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44455666679999999999999999999864
No 335
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.69 E-value=0.0062 Score=48.86 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAI 122 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L 122 (310)
-|+|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 336
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.64 E-value=0.0043 Score=61.01 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=28.8
Q ss_pred eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
..+.+.++..-.++++|++|+|||||++.|.+-.
T Consensus 361 ~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 361 QDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3455667777789999999999999999999874
No 337
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.64 E-value=0.005 Score=50.36 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...++++|++|+|||||++++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999865
No 338
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.58 E-value=0.0066 Score=50.74 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 021615 104 DVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~ 124 (310)
.|+|+|++||||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 339
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.58 E-value=0.0057 Score=56.35 Aligned_cols=22 Identities=41% Similarity=0.366 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|+|++|||||||+++|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999864
No 340
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.54 E-value=0.0049 Score=60.67 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=27.8
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.++..-.++++|++|+|||||++.|.+-.
T Consensus 373 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 373 DITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp SEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred ceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 345566677789999999999999999999864
No 341
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.54 E-value=0.0065 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|.+||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999764
No 342
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.52 E-value=0.0042 Score=60.92 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=28.7
Q ss_pred eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
..+.+.++..-.++++|++|+|||||++.|.+..
T Consensus 358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4455666777789999999999999999999864
No 343
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.49 E-value=0.0048 Score=55.81 Aligned_cols=25 Identities=40% Similarity=0.495 Sum_probs=22.0
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
++-++|+|+.|||||||++.|.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4568999999999999999999763
No 344
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.49 E-value=0.0077 Score=48.81 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 021615 104 DVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~ 124 (310)
-|+++|+|||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 388999999999999999986
No 345
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.47 E-value=0.0079 Score=49.79 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999864
No 346
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.45 E-value=0.0071 Score=50.63 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|.+|||||||.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45999999999999999999976
No 347
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.45 E-value=0.0077 Score=49.30 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~ 124 (310)
..|+++|.+||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 348
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.43 E-value=0.009 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.+.++++|++|+|||||+.+|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999864
No 349
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.40 E-value=0.007 Score=54.42 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.3
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...|+|+|++|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999874
No 350
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.38 E-value=0.0085 Score=49.35 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
....|+|+|++||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456999999999999999999865
No 351
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.36 E-value=0.0056 Score=49.01 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
..++++|++|+|||||++++.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998753
No 352
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.34 E-value=0.006 Score=59.97 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=28.6
Q ss_pred eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
..+.+.++..-.++++|++|+|||||++.|.+-.
T Consensus 360 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4455666777789999999999999999999864
No 353
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.32 E-value=0.0093 Score=52.11 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=24.8
Q ss_pred hhhhhhc---cCeEEEEcCCCCcHHHHHHHHHc
Q 021615 95 LELILRV---VADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 95 ~~~~l~~---~~~V~lvG~~naGKSSLln~L~~ 124 (310)
+.+.++. ...|+|+|++||||||+.+.|.+
T Consensus 38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3445555 67899999999999999999976
No 354
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.31 E-value=0.0077 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.6
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..-.|+|+|++|||||||++.|.+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3446999999999999999999874
No 355
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.31 E-value=0.0095 Score=48.34 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-|.++|+|||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999864
No 356
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.30 E-value=0.01 Score=49.92 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
+|+|.|+|||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999653
No 357
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.29 E-value=0.01 Score=49.24 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 356999999999999999999875
No 358
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.28 E-value=0.011 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHH
Q 021615 102 VADVGLVGLPNAGKSTLLAAIT 123 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~ 123 (310)
...|+|+|++||||||+.+.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999998
No 359
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.24 E-value=0.011 Score=49.79 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
+|+|+|+|||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 360
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.23 E-value=0.0089 Score=52.84 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 021615 105 VGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~~~ 125 (310)
|+|+|+||+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999975
No 361
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.23 E-value=0.0091 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~ 124 (310)
.-|+|+|++|+|||||++.|.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999976
No 362
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.18 E-value=0.01 Score=48.53 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|.|.+||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 363
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.17 E-value=0.0091 Score=56.18 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-|+|+|++|||||||+++|++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999875
No 364
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.10 E-value=0.013 Score=47.85 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~ 124 (310)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999975
No 365
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.09 E-value=0.011 Score=51.19 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-++|+|+||+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999975
No 366
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.07 E-value=0.0082 Score=53.94 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=22.4
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.+..--++++|++|||||||++.|.+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 344456899999999999999999864
No 367
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.06 E-value=0.011 Score=48.52 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.-|.++|.|||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 368
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.05 E-value=0.012 Score=48.03 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-.+|+|++|+|||||+.+|...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 369
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.04 E-value=0.014 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.0
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...|+|+|.|||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999753
No 370
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.02 E-value=0.014 Score=47.63 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.8
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...|+++|++|+||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 456999999999999999999743
No 371
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.02 E-value=0.015 Score=47.85 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.8
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
+....|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34457999999999999999999753
No 372
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.02 E-value=0.011 Score=53.55 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-|+|+|++|||||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 373
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.01 E-value=0.015 Score=47.57 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=20.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...|+++|++||||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999753
No 374
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.92 E-value=0.012 Score=57.09 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=23.8
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+...-.++|+|++|||||||++.|.|..
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444569999999999999999999964
No 375
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.92 E-value=0.013 Score=49.40 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
--++|+|++|+|||||++.|.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 34889999999999999999843
No 376
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.91 E-value=0.0072 Score=64.90 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=29.1
Q ss_pred eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+.++..-+|+|||++|||||||++.|.+--
T Consensus 1096 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1096 KGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred cceeEEECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4566677778899999999999999999999753
No 377
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.90 E-value=0.11 Score=40.84 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.5
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
....|.+.|+||+|||++..++...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3346999999999999999999865
No 378
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.90 E-value=0.014 Score=47.31 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|+|||||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999753
No 379
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.89 E-value=0.017 Score=46.39 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 380
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.89 E-value=0.012 Score=57.28 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~ 126 (310)
-++|+|++|||||||++.|+|..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 38999999999999999999864
No 381
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.86 E-value=0.011 Score=54.08 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=25.2
Q ss_pred hhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 97 LILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+...-+++|+|++|||||||++.|.+..
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344555689999999999999999999874
No 382
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.84 E-value=0.0098 Score=50.91 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.-|+|+|..|||||||++.|.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999999875
No 383
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.086 Score=49.73 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.-|++.|+||+|||+|.+++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999865
No 384
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.80 E-value=0.016 Score=48.77 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
+|+|.|.|||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.80 E-value=0.0067 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999754
No 386
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.79 E-value=0.017 Score=48.26 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=21.0
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHc
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~ 124 (310)
....|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999975
No 387
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.78 E-value=0.019 Score=47.37 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=21.9
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
+....|+|.|.+||||||+.+.|...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 33456999999999999999999754
No 388
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.014 Score=57.48 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.++|+|++|+|||||++.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999875
No 389
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.77 E-value=0.012 Score=56.40 Aligned_cols=29 Identities=31% Similarity=0.252 Sum_probs=23.5
Q ss_pred hhhhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 96 ELILRVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 96 ~~~l~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.+.+.. -.++|+|++|||||||++.|.+-
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 344444 56899999999999999999874
No 390
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.74 E-value=0.017 Score=48.10 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|.|.+||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999999999764
No 391
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.74 E-value=0.015 Score=51.13 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~ 126 (310)
-|+|+|++|+|||||+++|.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 48999999999999999999753
No 392
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.73 E-value=0.017 Score=48.16 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=20.8
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...|+|.|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999999753
No 393
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.73 E-value=0.018 Score=48.95 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...|+|+|.+||||||+.+.|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999753
No 394
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.71 E-value=0.016 Score=47.48 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.-|+++|.+||||||+.+.|...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 34899999999999999999754
No 395
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.69 E-value=0.015 Score=51.67 Aligned_cols=26 Identities=19% Similarity=0.089 Sum_probs=21.7
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...--++|+|+||+|||||++.|.+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 33445899999999999999998864
No 396
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.67 E-value=0.017 Score=47.04 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|+|.+||||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 397
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.65 E-value=0.016 Score=62.33 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=29.5
Q ss_pred eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+.++..-.+++||++|+|||||++.|.+.-
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 4566677788899999999999999999999864
No 398
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.64 E-value=0.23 Score=44.67 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.-|.|.|+||+|||+|.+++.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 45899999999999999999864
No 399
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.63 E-value=0.016 Score=52.61 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..++++|+||+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999875
No 400
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.62 E-value=0.017 Score=51.62 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|++|||||||.+.|.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999988753
No 401
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.59 E-value=0.013 Score=54.02 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=21.9
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...--|+++|++|||||||++.|.+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 34446899999999999999999864
No 402
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.56 E-value=0.02 Score=46.87 Aligned_cols=22 Identities=41% Similarity=0.409 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|.|.|||||||+.+.|...
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 403
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.55 E-value=0.022 Score=46.64 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 021615 104 DVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~ 124 (310)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 404
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.54 E-value=0.019 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.165 Sum_probs=22.1
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
+...-++++|++|+|||||++.|.+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34456999999999999999999864
No 405
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.14 Score=48.12 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-|++.|+||+|||+|.+++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
No 406
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.50 E-value=0.02 Score=47.03 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999754
No 407
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.49 E-value=0.016 Score=54.75 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=25.2
Q ss_pred hhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 97 LILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 97 ~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+...-.++|+|++|+|||||++.|.+..
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344555689999999999999999999864
No 408
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.48 E-value=0.021 Score=48.33 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|++||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 409
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.46 E-value=0.021 Score=49.88 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.-|+++|.|||||||+.+.|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999999999753
No 410
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.45 E-value=0.024 Score=47.10 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|.|||||||+.+.|...
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999753
No 411
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.45 E-value=0.022 Score=46.50 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~ 124 (310)
+.|+|+|.|||||||+-+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999875
No 412
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.39 E-value=0.022 Score=49.26 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.6
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
....|+|.|+|||||||+.+.|...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999753
No 413
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.36 E-value=0.021 Score=48.54 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=21.0
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.--++|+|++|+|||||+..|.+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 345899999999999999999973
No 414
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.36 E-value=0.018 Score=61.69 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=29.1
Q ss_pred eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
..+.+.++..-.+++||++|||||||++.|.+..
T Consensus 407 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4556677777889999999999999999999864
No 415
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.34 E-value=0.025 Score=45.13 Aligned_cols=19 Identities=42% Similarity=0.548 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 021615 105 VGLVGLPNAGKSTLLAAIT 123 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~ 123 (310)
.+|+|+.|+|||||+.+|.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999999985
No 416
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.33 E-value=0.022 Score=47.97 Aligned_cols=22 Identities=36% Similarity=0.338 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~ 124 (310)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 417
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.32 E-value=0.026 Score=45.42 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|.|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 418
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.32 E-value=0.028 Score=47.48 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|.|||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999753
No 419
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.30 E-value=0.024 Score=47.56 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=21.6
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
....-|+++|.+||||||+.+.|.+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34456899999999999999999754
No 420
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.28 E-value=0.023 Score=46.94 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|.+||||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35999999999999999999875
No 421
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.28 E-value=0.027 Score=47.88 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 422
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.27 E-value=0.019 Score=55.78 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.7
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+..-.++|+|+.|+|||||++.|+|..
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345579999999999999999999975
No 423
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.26 E-value=0.023 Score=52.37 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 021615 105 VGLVGLPNAGKSTLLAAIT 123 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~ 123 (310)
.+|+|++|||||||+++++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6799999999999999987
No 424
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.26 E-value=0.027 Score=47.59 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
+.|.|+|+|||||+|.-..|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999864
No 425
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.26 E-value=0.022 Score=56.21 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=23.8
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+...-.++|+|++|+|||||++.|.|..
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3444569999999999999999999864
No 426
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.24 E-value=0.021 Score=50.71 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.-|+|+|+|||||||+.+.|...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34889999999999999999754
No 427
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.23 E-value=0.023 Score=49.43 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-|+|+|++|||||||-+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 3789999999999999999754
No 428
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.21 E-value=0.026 Score=46.82 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|.|.+||||||+.+.|...
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999854
No 429
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.19 E-value=0.025 Score=60.57 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=28.7
Q ss_pred eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+.+.+.++..-+|+|+|++|+|||||++.|.+-.
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3455666777789999999999999999999864
No 430
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.18 E-value=0.025 Score=45.57 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..+.|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999998764
No 431
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.14 E-value=0.026 Score=46.07 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|.|.+||||||+.+.|...
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 432
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.11 E-value=0.019 Score=55.74 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.5
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+..-.++|+|++|||||||++.|+|..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345568999999999999999999875
No 433
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.09 E-value=0.029 Score=46.92 Aligned_cols=22 Identities=23% Similarity=0.144 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~ 124 (310)
--++++|++|+|||||+..|.+
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999987
No 434
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.09 E-value=0.016 Score=59.97 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=29.1
Q ss_pred eehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 93 VSLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 93 ~~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
..+.+.+...-.++|+|++|||||||++.|+|..
T Consensus 690 ~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 690 TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455667777789999999999999999999875
No 435
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.01 E-value=0.023 Score=56.04 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.5
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
+..-.++|+|++|+|||||++.|.|..
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345578999999999999999999975
No 436
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.99 E-value=0.18 Score=47.16 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.-|+++|+|||||||+.+.|...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 34889999999999999999864
No 437
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.89 E-value=0.024 Score=46.01 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=16.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|.|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999753
No 438
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.03 Score=55.23 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHcCCC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHAKP 127 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~~~ 127 (310)
.++|+|++|+|||||++.|.|...
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 489999999999999999999753
No 439
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.80 E-value=0.036 Score=47.91 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=21.0
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...|+|+|+||+|||||.+++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345999999999999999999864
No 440
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.75 E-value=0.04 Score=47.03 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|.+||||||+.+.|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999754
No 441
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.73 E-value=0.032 Score=47.83 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..-|++.|++||||||+++.|...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 345899999999999999999865
No 442
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.63 E-value=0.023 Score=49.38 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+++|+|||||||+.+.|...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999864
No 443
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.61 E-value=0.0064 Score=52.39 Aligned_cols=22 Identities=45% Similarity=0.422 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 021615 105 VGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~~~~ 126 (310)
++|+|++|||||||+++|.+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5789999999999999998753
No 444
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.60 E-value=0.026 Score=58.45 Aligned_cols=31 Identities=35% Similarity=0.516 Sum_probs=25.7
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
+.+.+...-.++|+|++|+|||||++.|.+.
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445566667999999999999999999964
No 445
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.59 E-value=0.044 Score=43.99 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
-.|+|.|.+||||||+-+.|...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 446
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.52 E-value=0.047 Score=47.12 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.4
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHc
Q 021615 102 VADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~ 124 (310)
...|+|.|++|+||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999974
No 447
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.47 E-value=0.011 Score=55.02 Aligned_cols=29 Identities=34% Similarity=0.322 Sum_probs=23.4
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHHc
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~~ 124 (310)
+.+.+... .++|+|++|||||||+++|..
T Consensus 54 v~l~~~~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 54 LELELGGG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEECCSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 34455566 799999999999999998853
No 448
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.39 E-value=0.038 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.189 Sum_probs=21.7
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHHHc
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L~~ 124 (310)
+...--++|+|++|+|||||+..|.+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 33445689999999999999999885
No 449
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.39 E-value=0.041 Score=47.62 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~ 124 (310)
..|+|.|.+||||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 450
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.35 E-value=0.044 Score=46.41 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.+++.|+||+||||+..+|...
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999998888753
No 451
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.30 E-value=0.043 Score=46.23 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...+.|.|++|+|||||++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999998753
No 452
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.30 E-value=0.048 Score=46.59 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHc
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~ 124 (310)
....|+|+|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999986
No 453
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.24 E-value=0.045 Score=45.28 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|.|.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999998864
No 454
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.17 E-value=0.053 Score=46.20 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.5
Q ss_pred hccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 100 RVVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 100 ~~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
+...-|.|+|+|||||+|....|...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33334678999999999999999754
No 455
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.16 E-value=0.035 Score=44.68 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
...|.|.|++|+|||+|+..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998754
No 456
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.10 E-value=0.049 Score=45.40 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|+|.+||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 34999999999999999999754
No 457
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.07 E-value=0.035 Score=54.01 Aligned_cols=25 Identities=40% Similarity=0.375 Sum_probs=21.9
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
....|+|+|++|||||||.+.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4456999999999999999999875
No 458
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.05 E-value=0.39 Score=45.13 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.-|.+.|+||+|||+|.+++.+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 45999999999999999999875
No 459
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.97 E-value=0.023 Score=56.66 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=23.2
Q ss_pred hhhhhhccCeEEEEcCCCCcHHHHHHHHH
Q 021615 95 LELILRVVADVGLVGLPNAGKSTLLAAIT 123 (310)
Q Consensus 95 ~~~~l~~~~~V~lvG~~naGKSSLln~L~ 123 (310)
+.+.+...-.++|+|++|||||||++.++
T Consensus 341 vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 341 VSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 44555566679999999999999998654
No 460
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.97 E-value=0.053 Score=47.92 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 021615 104 DVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~ 124 (310)
-|.++|.|||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999986
No 461
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.93 E-value=0.058 Score=45.24 Aligned_cols=19 Identities=42% Similarity=0.548 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 021615 105 VGLVGLPNAGKSTLLAAIT 123 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~ 123 (310)
.+|+|+.|+|||||+.+|.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6789999999999999884
No 462
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.93 E-value=0.55 Score=43.73 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.-|.+.|+||+|||+|..++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 45999999999999999999865
No 463
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.89 E-value=0.055 Score=44.79 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|.|.+||||||+.+.|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999763
No 464
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.88 E-value=0.34 Score=45.92 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..-|+|.|+||+|||+|.+++.+.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhc
Confidence 346999999999999999999864
No 465
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.76 E-value=0.056 Score=47.79 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~ 124 (310)
..|+|.|.+||||||+.+.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999999973
No 466
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.62 E-value=0.074 Score=45.74 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
++++|+|+|||||||+...|...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 467
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.60 E-value=0.062 Score=44.84 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-++|.|++|+|||||+..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998753
No 468
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.52 E-value=0.061 Score=49.51 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.8
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHH
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAI 122 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L 122 (310)
.+...||+|+|.+++|||||+..+
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHH
Confidence 355678999999999999999886
No 469
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.52 E-value=0.056 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHc
Q 021615 102 VADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~ 124 (310)
.+.+++.|++|+|||||++.|.+
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999999987
No 470
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.45 E-value=0.063 Score=47.30 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|.|.|+||+|||||.+++.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 471
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.41 E-value=0.069 Score=45.31 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHH
Q 021615 103 ADVGLVGLPNAGKSTLLAAIT 123 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~ 123 (310)
--++|+|+||+|||||...+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 348899999999999977665
No 472
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.38 E-value=0.48 Score=43.56 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|+|.|+||+|||+|..++...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999764
No 473
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.37 E-value=0.076 Score=44.73 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.-|+|+|++|+|||||...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999998653
No 474
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.34 E-value=0.073 Score=46.52 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.5
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
....+.|.|+||+|||+|.+++.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999865
No 475
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.31 E-value=0.072 Score=43.91 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..+.|.|++|+|||+|+..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999998753
No 476
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.31 E-value=0.064 Score=49.03 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.1
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
...-++|+|++|+|||||+..|.+..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34468999999999999999998753
No 477
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.29 E-value=0.4 Score=45.11 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.-|+|.|+||+|||+|..++...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 478
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.20 E-value=0.3 Score=46.17 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.8
Q ss_pred ccCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 101 VVADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 101 ~~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
....+.|.|+||+|||||.+.|.+.
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3357999999999999999999865
No 479
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.18 E-value=0.079 Score=47.11 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..-|+|.|+||+|||+|.+++.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 345999999999999999999875
No 480
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.07 E-value=0.083 Score=48.07 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.++|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999865
No 481
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.06 E-value=0.086 Score=45.26 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..-|.|.|+||+|||+|.+++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999999864
No 482
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.94 E-value=0.094 Score=47.35 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=21.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
.+.+++.|++|+||||+++.+.+.
T Consensus 46 ~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 46 LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999999865
No 483
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.90 E-value=0.099 Score=46.97 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..+.+.|+||+||||+++++.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999764
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.90 E-value=0.072 Score=51.38 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.1
Q ss_pred hhccCeEEEEcCCCCcHHHHHHHH
Q 021615 99 LRVVADVGLVGLPNAGKSTLLAAI 122 (310)
Q Consensus 99 l~~~~~V~lvG~~naGKSSLln~L 122 (310)
+...--++|+|++|||||||++.|
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Confidence 344556999999999999999994
No 485
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.90 E-value=0.078 Score=48.02 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=20.9
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..-++|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999864
No 486
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.85 E-value=0.081 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..+.|.|+||+|||||++++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999999999864
No 487
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=91.76 E-value=0.092 Score=47.64 Aligned_cols=19 Identities=42% Similarity=0.548 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 021615 105 VGLVGLPNAGKSTLLAAIT 123 (310)
Q Consensus 105 V~lvG~~naGKSSLln~L~ 123 (310)
.+|+|++|+|||||+.+++
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999974
No 488
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.64 E-value=0.07 Score=48.04 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 021615 104 DVGLVGLPNAGKSTLLAAIT 123 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~ 123 (310)
-.+|+|++|+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 47899999999999999997
No 489
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.62 E-value=0.089 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-+.+.|+||+|||+|..++...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4677799999999999999864
No 490
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=91.43 E-value=0.094 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-++|+|++|+|||||+.++...
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999753
No 491
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.36 E-value=0.079 Score=47.34 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.2
Q ss_pred cCeEEEEcCCCCcHHHHHHHHHcC
Q 021615 102 VADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 102 ~~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..-++|.|++|+|||||++.+...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 356899999999999999999865
No 492
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=91.32 E-value=0.091 Score=50.58 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=24.0
Q ss_pred hhhhccCeEEEEcCCCCcHHHHHHHHHc
Q 021615 97 LILRVVADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 97 ~~l~~~~~V~lvG~~naGKSSLln~L~~ 124 (310)
+.+...+.++|+|.+|+|||++++.|..
T Consensus 162 ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 162 ADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 3445688999999999999999999864
No 493
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.27 E-value=0.13 Score=47.18 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCcHHHHHHHHHc
Q 021615 103 ADVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~ 124 (310)
+.|+|+|++|+||||+...|.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4599999999999999998865
No 494
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.14 E-value=0.12 Score=45.62 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCcHHHHHHHHHcC
Q 021615 103 ADVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 103 ~~V~lvG~~naGKSSLln~L~~~ 125 (310)
..|.|.|+||+|||+|.+++...
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999877643
No 495
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.13 E-value=0.11 Score=45.88 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.++++|+||+|||++.++|.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999999764
No 496
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=91.08 E-value=0.12 Score=47.51 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHc
Q 021615 104 DVGLVGLPNAGKSTLLAAITH 124 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~ 124 (310)
-++++|+.|+|||||++++..
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 478999999999999999974
No 497
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.08 E-value=0.1 Score=50.05 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-|+|+|+||+|||||++++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999875
No 498
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.04 E-value=0.12 Score=47.09 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
-|+|+|++|||||||...|...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 4899999999999999999764
No 499
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.94 E-value=0.12 Score=46.76 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHcC
Q 021615 104 DVGLVGLPNAGKSTLLAAITHA 125 (310)
Q Consensus 104 ~V~lvG~~naGKSSLln~L~~~ 125 (310)
.|+|+|++|||||||-..|...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
No 500
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.88 E-value=0.14 Score=50.20 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=27.4
Q ss_pred ehhhhhhccCeEEEEcCCCCcHHHHHHHHHcCC
Q 021615 94 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 126 (310)
Q Consensus 94 ~~~~~l~~~~~V~lvG~~naGKSSLln~L~~~~ 126 (310)
.+.+.+.....++|+|++|+|||||+++|.+.-
T Consensus 52 ~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 52 VIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 345556666789999999999999999998764
Done!