BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021616
(310 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55826|PPOC_ARATH Protoporphyrinogen oxidase, chloroplastic OS=Arabidopsis thaliana
GN=PPOX PE=2 SV=1
Length = 537
Score = 531 bits (1368), Expect = e-150, Method: Compositional matrix adjust.
Identities = 259/310 (83%), Positives = 281/310 (90%)
Query: 1 MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLP 60
MKAAFGKVWKLEQ GGSIIGGTFKAIQE+ APK RDPRLPKP+GQTVGSFRKGL MLP
Sbjct: 228 MKAAFGKVWKLEQNGGSIIGGTFKAIQERKNAPKAERDPRLPKPQGQTVGSFRKGLRMLP 287
Query: 61 EAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLR 120
EAIS RLGSKVKLSWKLSG+ KL+SG Y+LTYETP+GLVS++S+SVVMTVPS+VAS LLR
Sbjct: 288 EAISARLGSKVKLSWKLSGITKLESGGYNLTYETPDGLVSVQSKSVVMTVPSHVASGLLR 347
Query: 121 PLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIY 180
PLS AA ALS+ YYPPVAAVS+SYPKEAIRTECLIDGELKGFGQLHPR+QGVETLGTIY
Sbjct: 348 PLSESAANALSKLYYPPVAAVSISYPKEAIRTECLIDGELKGFGQLHPRTQGVETLGTIY 407
Query: 181 SSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLG 240
SSSLFPNRAP GR+LLLNYIGG+TN GILSK E ELVEAVDRDLRKMLI PN+ DPL LG
Sbjct: 408 SSSLFPNRAPPGRILLLNYIGGSTNTGILSKSEGELVEAVDRDLRKMLIKPNSTDPLKLG 467
Query: 241 VRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEV 300
VRVW QAIPQFLVGH D+LD AKSSL +GY+GLFLGGNYVAGVALGRCVE AYE A EV
Sbjct: 468 VRVWPQAIPQFLVGHFDILDTAKSSLTSSGYEGLFLGGNYVAGVALGRCVEGAYETAIEV 527
Query: 301 SNFLSQYAYK 310
+NF+S+YAYK
Sbjct: 528 NNFMSRYAYK 537
>sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp.
japonica GN=PPOX1 PE=2 SV=1
Length = 536
Score = 515 bits (1326), Expect = e-145, Method: Compositional matrix adjust.
Identities = 249/310 (80%), Positives = 278/310 (89%)
Query: 1 MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLP 60
MKAAFGKVW+LE TGGSIIGGT K IQE+ K PK PRDPRLP PKGQTV SFRKGLTMLP
Sbjct: 227 MKAAFGKVWRLEDTGGSIIGGTIKTIQERGKNPKPPRDPRLPTPKGQTVASFRKGLTMLP 286
Query: 61 EAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLR 120
+AI+ RLGSKVKLSWKL+ + K D+ Y+L YETPEG+VS+++++VVMT+PSYVAS +LR
Sbjct: 287 DAITSRLGSKVKLSWKLTSITKSDNKGYALVYETPEGVVSVQAKTVVMTIPSYVASDILR 346
Query: 121 PLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIY 180
PLS DAA ALS FYYPPVAAV+VSYPKEAIR ECLIDGEL+GFGQLHPRSQGVETLGTIY
Sbjct: 347 PLSSDAADALSIFYYPPVAAVTVSYPKEAIRKECLIDGELQGFGQLHPRSQGVETLGTIY 406
Query: 181 SSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLG 240
SSSLFPNRAPAGRVLLLNYIGG+TN GI+SK ESELVEAVDRDLRKMLINP A DPLVLG
Sbjct: 407 SSSLFPNRAPAGRVLLLNYIGGSTNTGIVSKTESELVEAVDRDLRKMLINPKAVDPLVLG 466
Query: 241 VRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEV 300
VRVW QAIPQFL+GHLD L+AAKS+L GY GLFLGGNYVAGVALGRCVE AYE AS++
Sbjct: 467 VRVWPQAIPQFLIGHLDHLEAAKSALGKGGYDGLFLGGNYVAGVALGRCVEGAYESASQI 526
Query: 301 SNFLSQYAYK 310
S++L++YAYK
Sbjct: 527 SDYLTKYAYK 536
>sp|O24163|PPOC_TOBAC Protoporphyrinogen oxidase, chloroplastic OS=Nicotiana tabacum
GN=PPXI PE=2 SV=1
Length = 548
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 248/310 (80%), Positives = 277/310 (89%)
Query: 1 MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLP 60
MKAAFGKVWKLE+TGGSIIGGTFKAI+E++ PK PRDPRLPKPKGQTVGSFRKGL MLP
Sbjct: 239 MKAAFGKVWKLEETGGSIIGGTFKAIKERSSTPKAPRDPRLPKPKGQTVGSFRKGLRMLP 298
Query: 61 EAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLR 120
+AIS RLGSK+KLSWKLS + K + G Y LTYETPEG+VSL+SRS+VMTVPSYVAS++LR
Sbjct: 299 DAISARLGSKLKLSWKLSSITKSEKGGYHLTYETPEGVVSLQSRSIVMTVPSYVASNILR 358
Query: 121 PLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIY 180
PLSV AA ALS FYYPPV AV+++YP+EAIR E L+DGELKGFGQLHPR+QGVETLGTIY
Sbjct: 359 PLSVAAADALSNFYYPPVGAVTITYPQEAIRDERLVDGELKGFGQLHPRTQGVETLGTIY 418
Query: 181 SSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLG 240
SSSLFPNRAP GRVLLLNYIGGA N ILSK ES+LVE VDRDLRKMLI P A+DPLV+G
Sbjct: 419 SSSLFPNRAPKGRVLLLNYIGGAKNPEILSKTESQLVEVVDRDLRKMLIKPKAQDPLVVG 478
Query: 241 VRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEV 300
VRVW QAIPQFLVGHLD L AK+++ DNG +GLFLGGNYV+GVALGRCVE AYEVASEV
Sbjct: 479 VRVWPQAIPQFLVGHLDTLSTAKAAMNDNGLEGLFLGGNYVSGVALGRCVEGAYEVASEV 538
Query: 301 SNFLSQYAYK 310
+ FLS+YAYK
Sbjct: 539 TGFLSRYAYK 548
>sp|P56601|PPOX_MYXXA Protoporphyrinogen oxidase OS=Myxococcus xanthus GN=hemY PE=1 SV=1
Length = 471
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 142/301 (47%), Gaps = 17/301 (5%)
Query: 1 MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPK-GQTVGSFRKGLTML 59
+ A F + K+E+ S+I G +A KA +Q P PK + +F GL +L
Sbjct: 178 VAATFPMLVKMEREHRSLILGAIRA----QKAQRQAALPAGTAPKLSGALSTFDGGLQVL 233
Query: 60 PEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLL 119
+A++ LG + ++ G+ + D G + L E L VV+ P++ + LL
Sbjct: 234 IDALAASLGDAAHVGARVEGLAREDGG-WRLIIEEHGRRAELSVAQVVLAAPAHATAKLL 292
Query: 120 RPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTI 179
RPL A ++ Y P+A V + + + GFG L P + LG I
Sbjct: 293 RPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAP-------DGFGFLVPAEEQRRMLGAI 345
Query: 180 YSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVL 239
++S+ FP RA GRVL +GGA G++ + E L A+ R+ K L A+ P
Sbjct: 346 HASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALA-ALAREELKALAGVTAR-PSFT 403
Query: 240 GVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASE 299
V W IPQ+ +GHL+ + A ++L+ GL L GN GV L C+ +A ++A
Sbjct: 404 RVFRWPLGIPQYNLGHLERVAAIDAALQR--LPGLHLIGNAYKGVGLNDCIRNAAQLADA 461
Query: 300 V 300
+
Sbjct: 462 L 462
>sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum
GN=PPXII PE=1 SV=1
Length = 504
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 157/328 (47%), Gaps = 44/328 (13%)
Query: 1 MKAAFGKVWKLEQTGGSIIGGTFKA-IQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTML 59
M +F ++W LE+ GS+I G ++ + KN+ + P K + + SF G+ L
Sbjct: 186 MHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTL 245
Query: 60 PEAISK-------RLGSKV-KLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSR--SVVMT 109
+AI K RL S+V +LS + +DS +S+ +P S +V+MT
Sbjct: 246 TDAICKDLREDELRLNSRVLELSCSCTEDSAIDS--WSIISASPHKRQSEEESFDAVIMT 303
Query: 110 VPSYVASSLL-----RPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFG 164
P S+ P ++ + + Y P++ V ++ +E ++ L+GFG
Sbjct: 304 APLCDVKSMKIAKRGNPFLLNF---IPEVDYVPLSVVITTFKRENVKYP------LEGFG 354
Query: 165 QLHP---RSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVD 221
L P + G++TLGT++SS +FP+RAP L ++GG+ N + +EL E V
Sbjct: 355 VLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVT 414
Query: 222 RDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGH-----LDLLDAAKSSLRDNGYQGLFL 276
DL+++L +P + W +A P L GH LD +D + +L GLF
Sbjct: 415 SDLKQLL--GAEGEPTYVNHLYWSKAFP--LYGHNYDSVLDAIDKMEKNL-----PGLFY 465
Query: 277 GGNYVAGVALGRCVESAYEVASEVSNFL 304
GN+ G+++G+ + S A V ++L
Sbjct: 466 AGNHRGGLSVGKALSSGCNAADLVISYL 493
>sp|Q94IG7|PPOCM_SPIOL Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia
oleracea GN=POX2 PE=1 SV=1
Length = 531
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 149/320 (46%), Gaps = 31/320 (9%)
Query: 1 MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLP 60
M+ AF ++W +E GS+I G ++ K + KP+ + SF+ G+ L
Sbjct: 217 MRHAFPELWNIENRFGSVISGFIQSKLSSKKEKGGEKQSSNKKPRVRGSFSFQGGMQTLV 276
Query: 61 EAISKRLGSK--------VKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112
+ I K G + LS+ +G L S +S++ + + +VV+T P
Sbjct: 277 DTICKEFGEDELKLQSEVLSLSYSHNG--SLTSENWSVSSMSNSTIQDQPYDAVVVTAPI 334
Query: 113 YVASSLL-----RPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLH 167
L P S+D +S P++ + ++ K ++ L+GFG L
Sbjct: 335 NNVKELKIMKVENPFSLDFIPEVSCL---PLSVIITTFKKTNVKRP------LEGFGVLV 385
Query: 168 PRSQ---GVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDL 224
P ++ G++TLGT++SS +FP+RAP+ L ++GG+ N + EL + V DL
Sbjct: 386 PSNEQHNGLKTLGTLFSSMMFPDRAPSDVYLYTTFVGGSRNRELAKASTDELKQIVSSDL 445
Query: 225 RKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGV 284
+++L +P + W +A P + + +L A + RD GLF GN+ G+
Sbjct: 446 QQLL--GTEGEPTFVNHFYWSKAFPLYGRNYDSVLRAIEKMERD--LPGLFYAGNHKGGL 501
Query: 285 ALGRCVESAYEVASEVSNFL 304
++G+ + S Y+ A ++L
Sbjct: 502 SVGKSIASGYKAAELAISYL 521
>sp|P32397|PPOX_BACSU Protoporphyrinogen oxidase OS=Bacillus subtilis (strain 168)
GN=hemY PE=1 SV=1
Length = 470
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 143/304 (47%), Gaps = 21/304 (6%)
Query: 1 MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLP 60
+ + F + ++ EQ S+I G K P+ K +GQ + GL L
Sbjct: 186 LMSTFPQFYQTEQKHRSLILGM------KKTRPQGSGQQLTAKKQGQ-FQTLSTGLQTLV 238
Query: 61 EAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLR 120
E I K+L K+ +K + V KL + E G V+L + SV++T P A+ +L
Sbjct: 239 EEIEKQL--KLTKVYKGTKVTKLSHSGSCYSLELDNG-VTLDADSVIVTAPHKAAAGMLS 295
Query: 121 PLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIY 180
L A L + VA V++ +P+ +++ E +G G + R+ +
Sbjct: 296 ELP--AISHLKNMHSTSVANVALGFPEGSVQMEH------EGTGFVISRNSDFAITACTW 347
Query: 181 SSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLG 240
++ +P+ AP G+ LL Y+G A + I+ +++++ V DL+K++ N N +P +
Sbjct: 348 TNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVM-NING-EPEMTC 405
Query: 241 VRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEV 300
V W +++PQ+ VGH + + +L + Y G+++ G GV + C++ S+
Sbjct: 406 VTRWHESMPQYHVGHKQRIKELREALA-SAYPGVYMTGASFEGVGIPDCIDQGKAAVSDA 464
Query: 301 SNFL 304
+L
Sbjct: 465 LTYL 468
>sp|P50336|PPOX_HUMAN Protoporphyrinogen oxidase OS=Homo sapiens GN=PPOX PE=1 SV=1
Length = 477
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 111/264 (42%), Gaps = 35/264 (13%)
Query: 51 SFRKGLTMLPEAISKRLGSK---VKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVV 107
S R GL MLP+A+ L S+ V + G+ G + ++ SL + V+
Sbjct: 228 SLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRD----SSLEADHVI 283
Query: 108 MTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLH 167
+P+ V S LL + A ALS VA V++ Y + ++GFG L
Sbjct: 284 SAIPASVLSELLPAEAAPLARALSAITAVSVAVVNLQYQGAHL--------PVQGFGHLV 335
Query: 168 PRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILS-----------KKESEL 216
P S+ LG +Y S FP + + L + + G + L L ++ ++
Sbjct: 336 PSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQE 395
Query: 217 VEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFL 276
A L++M P V + + IPQ+ +GH L++A+ L + L L
Sbjct: 396 AAATQLGLKEM--------PSHCLVHLHKNCIPQYTLGHWQKLESARQFLTAHRLP-LTL 446
Query: 277 GGNYVAGVALGRCVESAYEVASEV 300
G GVA+ C+ES + A V
Sbjct: 447 AGASYEGVAVNDCIESGRQAAVSV 470
>sp|Q60HD5|PPOX_MACFA Protoporphyrinogen oxidase OS=Macaca fascicularis GN=PPOX PE=2 SV=1
Length = 477
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 21/257 (8%)
Query: 51 SFRKGLTMLPEAISKRLGSK---VKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVV 107
S R GL MLP+A+ L S+ V + G+ G + ++ SL + V+
Sbjct: 228 SLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRD----SSLEADHVI 283
Query: 108 MTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLH 167
+P+ V S LL + A ALS VA V++ Y + ++GFG L
Sbjct: 284 SAIPASVLSELLPAEAAPLARALSAITAVSVAVVNLQYQGAHL--------PVQGFGHLV 335
Query: 168 PRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKK----ESELVEAVDRD 223
P S+ LG +Y S FP + + L + + G + L L EL + ++
Sbjct: 336 PSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQE 395
Query: 224 LRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAG 283
+ L V + + IPQ+ +GH L++A+ L + L L G G
Sbjct: 396 AAAAQLGLKELPSHCL-VHLHKNCIPQYTLGHWQKLESARQFLAAHRLP-LTLAGASYEG 453
Query: 284 VALGRCVESAYEVASEV 300
VA+ C+ES + A V
Sbjct: 454 VAVNDCIESGRQAAVSV 470
>sp|P51175|PPOX_MOUSE Protoporphyrinogen oxidase OS=Mus musculus GN=Ppox PE=2 SV=1
Length = 477
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 128/310 (41%), Gaps = 29/310 (9%)
Query: 1 MKAAFGKVWKLEQTGGSIIGGTF----KAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGL 56
+++ F +++ EQT SI+ G ++ Q + +Q R R + S R GL
Sbjct: 180 IRSCFPSLFQAEQTHRSILLGLLLGAGQSPQPDSSLIRQARAERWSQ------WSLRGGL 233
Query: 57 TMLPEAISKRLGSK---VKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113
+LP+A+ L SK V + G+ G + ++ G SL + ++ +P+
Sbjct: 234 EVLPQALHNHLASKGVTVLSGQPVCGLSLQPEGRWKVSL----GDSSLEADHIISAIPAS 289
Query: 114 VASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGV 173
S LL + A LS VA V++ Y R CL ++GFG L P S+
Sbjct: 290 ELSKLLPAEAAPLARILSTIKAVSVAVVNLQY-----RGACL---PVQGFGHLVPSSEDP 341
Query: 174 ETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPN- 232
LG +Y S FP + L + + G L L +L + + +
Sbjct: 342 TVLGIVYDSVAFPEQDGNPPSLRVTVMLGGYWLQKLKAAGHQLSPELFQQQAQEAAATQL 401
Query: 233 --AKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCV 290
+ P V + + IPQ+ +GH LD+A L L L G GVA+ C+
Sbjct: 402 GLKEPPSHCLVHLHKNCIPQYTIGHWQKLDSAMQFLTAQRLP-LTLAGASYEGVAVNDCI 460
Query: 291 ESAYEVASEV 300
ES + A V
Sbjct: 461 ESGRQAAVAV 470
>sp|Q54DT8|PPOX_DICDI Protoporphyrinogen oxidase OS=Dictyostelium discoideum GN=ppox PE=3
SV=1
Length = 532
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/340 (19%), Positives = 138/340 (40%), Gaps = 47/340 (13%)
Query: 1 MKAAFGKVWKLEQTGGSIIGGTFKAIQEKN-KAPKQPRDPRLPKPKGQ------------ 47
+K+ F + LE GG I+G FK+ ++K + + RL K +
Sbjct: 195 IKSTFKRAALLEPFGGLILGSLFKSKKQKQFELDLDKNEKRLLPSKNELTELFDKDTDKT 254
Query: 48 TVGSFRK-GLTMLPEAISKRLGS----KVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLR 102
V SF++ GL+ + + + + S K+ LS + ++K D +L +G +
Sbjct: 255 NVFSFKENGLSRMIQKLKSLIESDSLTKLYLSTSIVEIEK-DVTNGTLKVTDNKG-NQYQ 312
Query: 103 SRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKG 162
++ T+P + + + L Y +A +++ Y + + D KG
Sbjct: 313 YDQLISTIPLNQLAPMFKKSDSKLYQLLQSVNYTSIAVINLIYKSNKNVVKIISD---KG 369
Query: 163 FGQLHPRSQGVETLGTIYSSSLFPN--------------RAPAGRVLLLNYIGGATNL-- 206
FG L P + +G + S+ FP + ++ IGG +
Sbjct: 370 FGYLVPSKENQSVIGVCFDSNTFPEFVNNNNNNNNDNDNGNEKDQSIITVMIGGNNGIKD 429
Query: 207 ------GILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLD 260
+ + + +L++ + L K+L ++ P V ++ IP + +GH +L++
Sbjct: 430 RNDNWIDVTNTSKDKLLDIALKHLDKVLDIESS--PDFTNVSIYDNGIPHYNIGHQNLIN 487
Query: 261 AAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEV 300
++ + N L LGGN + GV + + + ++ + +
Sbjct: 488 EIQNHITKNYGTTLLLGGNSIDGVGINDSIHKSKQLINSL 527
>sp|O32434|PPOX_PROFF Protoporphyrinogen oxidase OS=Propionibacterium freudenreichii
subsp. freudenreichii GN=hemY PE=3 SV=1
Length = 527
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 16/190 (8%)
Query: 114 VASS--LLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQ 171
VASS LLRP AA AL+Q VS+++P A G L+ +
Sbjct: 327 VASSARLLRPQLPAAARALAQIPLASTTIVSLAWPVSAFDVAPDSQGWLE--------AD 378
Query: 172 GVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKK-ESELVEAVDRDLRKMLIN 230
G SS F RAP G VL+ ++ G L+ + EL+ AV +R +L
Sbjct: 379 AGPVSGLTASSIKFAGRAPDGSVLMRVFV--PDKRGPLTDAPDDELLSAVIDHVRPLL-- 434
Query: 231 PNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCV 290
+P + + W + +P++ VGHL+ S+L + + G+ + GV L C+
Sbjct: 435 GVHGEPGLTQITRWHKVMPKYTVGHLERAAVVDSTLAEQ-RPTWAVAGSALHGVGLPDCI 493
Query: 291 ESAYEVASEV 300
A A EV
Sbjct: 494 SDARHSADEV 503
>sp|Q10062|PPOX_SCHPO Protoporphyrinogen oxidase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=hem14 PE=3 SV=1
Length = 490
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 136/318 (42%), Gaps = 34/318 (10%)
Query: 3 AAFGKVWKLEQTGGSIIGGTFKAIQEK---NKAPKQPRDPRLPKPKGQTVGSFRKGLTML 59
+ FG + K+E+ G+I G +A+ + + A K + L +PK + + K +M
Sbjct: 189 SMFGFLAKIEKKYGNITLGLIRALLAREILSPAEKALKAALLAEPKTAELSNSMKSTSMF 248
Query: 60 P-----EAISKRLGSKVKLSWKLSGVK-KLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113
E I+ + ++K K+ VK L+ +L + LV + ++ V +
Sbjct: 249 AFKEGIETITLSIADELK---KMPNVKIHLNKPAKTLVPHKTQSLVDVNGQAYEYVVFAN 305
Query: 114 VASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPR---S 170
+ +L +S + Y V+V Y + ++GFG L P +
Sbjct: 306 SSRNLENLISCPKMETPTSSVY----VVNVYYKDPNVL-------PIRGFGLLIPSCTPN 354
Query: 171 QGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGAT---NLGILSKKESELVEAVDRDLRKM 227
LG ++ S N +V ++ +GG+ N ++ E V + L+
Sbjct: 355 NPNHVLGIVFDSEQN-NPENGSKVTVM--MGGSAYTKNTSLIPTNPEEAVNNALKALQHT 411
Query: 228 LINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALG 287
L + P + + Q IPQ+ VGH D L++ KS + N + L G++ GV++G
Sbjct: 412 L--KISSKPTLTNATLQQNCIPQYRVGHQDNLNSLKSWIEKNMGGRILLTGSWYNGVSIG 469
Query: 288 RCVESAYEVASEVSNFLS 305
C+ + + A ++++ ++
Sbjct: 470 DCIMNGHSTARKLASLMN 487
>sp|P0A5A7|PPOX_MYCTU Protoporphyrinogen oxidase OS=Mycobacterium tuberculosis GN=hemY
PE=3 SV=1
Length = 452
Score = 38.9 bits (89), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 26/265 (9%)
Query: 42 PKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSL 101
P G G+ G +L + + +R ++ W + V +L+ G + L ET
Sbjct: 208 PGSGGPVFGALDGGYQVLLDGLVRR----SRVHWVRARVVQLERG-WVLRDETGG---RW 259
Query: 102 RSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELK 161
++ +V++ VP+ + L+ ++ A Q A V+++ P C G L
Sbjct: 260 QADAVILAVPAPRLARLVDGIAPRTHAAARQIVSASSAVVALAVPGGTAFPHC--SGVLV 317
Query: 162 GFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNY-IGGATNLGILSKKESELVEAV 220
G P ++ + SS + R G V LL G + L+ + +L+
Sbjct: 318 A-GDESPHAKAIT-----LSSRKWGQR---GDVALLRLSFGRFGDEPALTASDDQLLAWA 368
Query: 221 DRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNY 280
DL + + A DP+ + VR W +A+PQ+ GH D++ + LR L + G+Y
Sbjct: 369 ADDL--VTVFGVAVDPVDVRVRRWIEAMPQYGPGHADVV----AELRAGLPPTLAVAGSY 422
Query: 281 VAGVALGRCVESAYEVASEVSNFLS 305
+ G+ + CV +A + V L
Sbjct: 423 LDGIGVPACVGAAGRAVTSVIEALD 447
>sp|P0A5A8|PPOX_MYCBO Protoporphyrinogen oxidase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=hemY PE=3 SV=1
Length = 452
Score = 38.9 bits (89), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 26/265 (9%)
Query: 42 PKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSL 101
P G G+ G +L + + +R ++ W + V +L+ G + L ET
Sbjct: 208 PGSGGPVFGALDGGYQVLLDGLVRR----SRVHWVRARVVQLERG-WVLRDETGG---RW 259
Query: 102 RSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELK 161
++ +V++ VP+ + L+ ++ A Q A V+++ P C G L
Sbjct: 260 QADAVILAVPAPRLARLVDGIAPRTHAAARQIVSASSAVVALAVPGGTAFPHC--SGVLV 317
Query: 162 GFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNY-IGGATNLGILSKKESELVEAV 220
G P ++ + SS + R G V LL G + L+ + +L+
Sbjct: 318 A-GDESPHAKAIT-----LSSRKWGQR---GDVALLRLSFGRFGDEPALTASDDQLLAWA 368
Query: 221 DRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNY 280
DL + + A DP+ + VR W +A+PQ+ GH D++ + LR L + G+Y
Sbjct: 369 ADDL--VTVFGVAVDPVDVRVRRWIEAMPQYGPGHADVV----AELRAGLPPTLAVAGSY 422
Query: 281 VAGVALGRCVESAYEVASEVSNFLS 305
+ G+ + CV +A + V L
Sbjct: 423 LDGIGVPACVGAAGRAVTSVIEALD 447
>sp|Q50008|PPOX_MYCLE Protoporphyrinogen oxidase OS=Mycobacterium leprae (strain TN)
GN=hemY PE=3 SV=1
Length = 451
Score = 35.0 bits (79), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 235 DPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESA 293
DP+ + V+ W A+PQ+ GH DL+ ++ L L + G+++ G+ + C+ +A
Sbjct: 384 DPVDVCVQRWIDAMPQYGPGHADLVAEVRAGLPPT----LVVAGSHMDGIGVPACISAA 438
>sp|Q72X39|AZOR4_BACC1 FMN-dependent NADH-azoreductase 4 OS=Bacillus cereus (strain ATCC
10987) GN=azoR4 PE=3 SV=1
Length = 208
Score = 34.7 bits (78), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 146 PKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 205
P E + L + L + + HP VE L+ P V ++N A
Sbjct: 13 PAEQAVSVKLYEAFLANYKEAHPNDTVVEL-------DLYKEELPYVGVDMINGTFKAGK 65
Query: 206 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSS 265
L+++E++ V D+ L + L D +V G +W IP L ++D L+ A +
Sbjct: 66 GFDLTEEEAKAVAVADKYLNQFL----EADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKT 121
Query: 266 LR 267
+
Sbjct: 122 FK 123
>sp|Q630J1|AZOR4_BACCZ FMN-dependent NADH-azoreductase 4 OS=Bacillus cereus (strain ZK /
E33L) GN=azoR4 PE=3 SV=1
Length = 208
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 146 PKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 205
P E + L + L + + HP T+ L+ P V ++N A
Sbjct: 13 PAEQAVSVKLYEAFLASYKEAHPND-------TVVELDLYKEELPYVGVDMINGTFKAGK 65
Query: 206 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSS 265
L+++E++ V D+ L + L D +V G +W IP L ++D L+ A +
Sbjct: 66 GFDLTEEEAKAVAVADKYLNQFL----EADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKT 121
Query: 266 LR 267
+
Sbjct: 122 FK 123
>sp|Q81JP2|AZOR4_BACAN FMN-dependent NADH-azoreductase 4 OS=Bacillus anthracis GN=azoR4
PE=3 SV=1
Length = 208
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 146 PKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 205
P E + L + L + + HP VE L+ P V ++N A
Sbjct: 13 PAEQAVSVKLYEAFLASYKEAHPNDTVVEL-------DLYKEELPYVGVDMINGTFKAGK 65
Query: 206 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSS 265
L+++E++ V D+ L + L D +V G +W IP L ++D L+ A +
Sbjct: 66 GFDLTEEEAKAVAVADKYLNQFL----EADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKT 121
Query: 266 LR 267
+
Sbjct: 122 FK 123
>sp|Q6HAM6|AZOR3_BACHK FMN-dependent NADH-azoreductase 3 OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=azoR3 PE=3 SV=1
Length = 208
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 146 PKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 205
P E + L + L + + HP VE L+ P V ++N A
Sbjct: 13 PAEQAVSVKLYEAFLASYKEAHPNDTVVEL-------DLYKEELPYVGVDMINGTFKAGK 65
Query: 206 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSS 265
L+++E++ V D+ L + L D +V G +W IP L ++D L+ A +
Sbjct: 66 GFDLTEEEAKAVAVADKYLNQFL----EADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKT 121
Query: 266 LR 267
+
Sbjct: 122 FK 123
>sp|Q54B29|Y3934_DICDI Uncharacterized membrane protein DDB_G0293934 OS=Dictyostelium
discoideum GN=DDB_G0293934 PE=4 SV=1
Length = 1713
Score = 32.3 bits (72), Expect = 4.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 193 RVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVL 239
RVLLL IG +G KKE + + +DRDL ++ I + + ++L
Sbjct: 1331 RVLLLENIGATQQIGRSLKKEKDHIVKIDRDLDRVKIEGSREKHVIL 1377
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,090,617
Number of Sequences: 539616
Number of extensions: 4905858
Number of successful extensions: 12495
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 12455
Number of HSP's gapped (non-prelim): 35
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)