Query 021616
Match_columns 310
No_of_seqs 138 out of 1467
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1276 Protoporphyrinogen oxi 100.0 2.1E-44 4.5E-49 316.5 25.1 291 1-301 192-490 (491)
2 PLN02576 protoporphyrinogen ox 100.0 1.3E-41 2.9E-46 322.9 35.5 309 2-310 183-493 (496)
3 TIGR00562 proto_IX_ox protopor 100.0 3E-39 6.5E-44 304.3 32.9 287 2-305 174-461 (462)
4 COG1232 HemY Protoporphyrinoge 100.0 3E-39 6.6E-44 294.8 27.0 273 1-301 171-443 (444)
5 PRK12416 protoporphyrinogen ox 100.0 3.2E-37 6.8E-42 290.5 31.2 277 2-305 183-462 (463)
6 PRK11883 protoporphyrinogen ox 100.0 8.5E-32 1.8E-36 252.9 32.0 271 3-302 179-450 (451)
7 PLN03000 amine oxidase 99.9 9.1E-25 2E-29 212.6 28.1 237 49-306 373-625 (881)
8 PLN02328 lysine-specific histo 99.9 1.5E-24 3.2E-29 211.2 28.1 272 6-308 396-683 (808)
9 PLN02529 lysine-specific histo 99.9 1.8E-23 3.9E-28 202.7 25.8 237 49-306 349-600 (738)
10 PRK07233 hypothetical protein; 99.9 1.5E-23 3.3E-28 195.9 24.3 236 48-305 189-432 (434)
11 COG3380 Predicted NAD/FAD-depe 99.9 9.2E-26 2E-30 188.3 8.1 227 50-304 101-331 (331)
12 PF01593 Amino_oxidase: Flavin 99.9 2.7E-24 6E-29 199.7 18.1 238 49-301 204-450 (450)
13 PRK07208 hypothetical protein; 99.9 1.8E-22 4E-27 191.1 27.4 244 48-304 209-461 (479)
14 PLN02268 probable polyamine ox 99.9 5.3E-23 1.1E-27 192.5 22.2 228 50-304 194-434 (435)
15 PLN02976 amine oxidase 99.9 5.5E-23 1.2E-27 205.6 23.3 236 49-305 928-1187(1713)
16 PLN02568 polyamine oxidase 99.9 8.2E-23 1.8E-27 194.1 22.9 285 2-305 197-536 (539)
17 TIGR03467 HpnE squalene-associ 99.9 6.2E-23 1.3E-27 190.8 21.3 226 47-301 186-418 (419)
18 PLN02676 polyamine oxidase 99.9 1.8E-22 3.9E-27 190.3 22.0 236 53-308 220-477 (487)
19 COG1231 Monoamine oxidase [Ami 99.9 1.1E-21 2.3E-26 176.2 20.3 234 50-306 202-449 (450)
20 PLN02612 phytoene desaturase 99.9 5.4E-20 1.2E-24 176.6 21.5 238 48-306 298-550 (567)
21 TIGR02731 phytoene_desat phyto 99.8 4.8E-19 1E-23 166.6 21.9 226 56-300 212-452 (453)
22 PLN02487 zeta-carotene desatur 99.8 6.2E-18 1.3E-22 161.1 23.2 244 46-303 283-552 (569)
23 TIGR02732 zeta_caro_desat caro 99.8 2.1E-18 4.5E-23 162.6 19.2 242 46-301 207-474 (474)
24 KOG0685 Flavin-containing amin 99.8 1.9E-18 4.1E-23 155.4 14.9 244 50-308 216-495 (498)
25 TIGR02733 desat_CrtD C-3',4' d 99.7 3.7E-17 8E-22 155.4 16.8 245 48-303 223-491 (492)
26 KOG0029 Amine oxidase [Seconda 99.7 5.1E-16 1.1E-20 145.6 17.4 235 50-305 212-460 (501)
27 TIGR02734 crtI_fam phytoene de 99.7 1.9E-15 4.1E-20 144.1 20.3 244 47-305 209-493 (502)
28 TIGR02730 carot_isom carotene 99.6 4.6E-14 9.9E-19 134.2 21.4 247 47-304 219-492 (493)
29 KOG4254 Phytoene desaturase [C 99.2 4.8E-10 1E-14 100.8 16.9 241 49-303 256-545 (561)
30 COG1233 Phytoene dehydrogenase 99.2 3.5E-10 7.6E-15 107.2 13.1 241 47-303 214-482 (487)
31 COG2907 Predicted NAD/FAD-bind 99.0 4.5E-09 9.7E-14 91.8 11.4 96 47-146 210-305 (447)
32 PF07156 Prenylcys_lyase: Pren 98.5 2.4E-06 5.1E-11 77.7 12.9 70 46-116 117-189 (368)
33 COG3349 Uncharacterized conser 98.0 6.8E-05 1.5E-09 69.7 10.4 248 47-307 204-466 (485)
34 TIGR00031 UDP-GALP_mutase UDP- 97.8 0.00035 7.7E-09 64.0 13.0 184 48-301 189-376 (377)
35 PTZ00363 rab-GDP dissociation 97.5 0.058 1.2E-06 50.7 22.8 61 49-112 224-288 (443)
36 TIGR02352 thiamin_ThiO glycine 96.8 0.048 1E-06 49.0 14.5 63 48-115 125-194 (337)
37 COG0654 UbiH 2-polyprenyl-6-me 96.8 0.24 5.2E-06 45.7 19.2 202 56-304 103-316 (387)
38 PRK07364 2-octaprenyl-6-methox 96.8 0.097 2.1E-06 48.7 16.4 57 57-114 121-181 (415)
39 PRK08132 FAD-dependent oxidore 96.7 0.63 1.4E-05 45.1 22.3 50 69-119 141-191 (547)
40 PRK08244 hypothetical protein; 96.7 0.35 7.7E-06 46.2 20.1 58 56-114 102-159 (493)
41 TIGR01984 UbiH 2-polyprenyl-6- 96.7 0.15 3.3E-06 46.7 16.8 54 57-114 105-162 (382)
42 TIGR01988 Ubi-OHases Ubiquinon 96.6 0.19 4.2E-06 46.0 16.7 53 57-113 106-162 (385)
43 TIGR02032 GG-red-SF geranylger 96.5 0.52 1.1E-05 41.2 21.5 47 65-114 102-148 (295)
44 PRK05732 2-octaprenyl-6-methox 96.5 0.28 6.1E-06 45.1 17.4 41 69-113 128-168 (395)
45 PRK08773 2-octaprenyl-3-methyl 96.4 0.22 4.7E-06 46.0 16.2 53 58-114 114-169 (392)
46 PRK09126 hypothetical protein; 96.4 0.13 2.9E-06 47.3 14.6 51 59-113 112-166 (392)
47 PRK07333 2-octaprenyl-6-methox 96.3 0.42 9.2E-06 44.1 17.4 52 58-113 112-166 (403)
48 PRK00711 D-amino acid dehydrog 96.2 0.25 5.3E-06 46.0 15.3 53 57-114 201-257 (416)
49 PRK06185 hypothetical protein; 96.1 1.1 2.4E-05 41.5 21.2 62 58-119 109-175 (407)
50 PRK06834 hypothetical protein; 96.1 0.66 1.4E-05 44.3 18.1 44 67-114 113-156 (488)
51 PRK06847 hypothetical protein; 96.1 1.1 2.4E-05 40.9 19.3 53 58-114 108-163 (375)
52 PF13738 Pyr_redox_3: Pyridine 96.1 0.019 4.1E-07 47.6 6.6 53 56-112 84-136 (203)
53 PRK07494 2-octaprenyl-6-methox 96.1 0.34 7.4E-06 44.6 15.5 52 58-113 112-166 (388)
54 TIGR03197 MnmC_Cterm tRNA U-34 96.0 0.12 2.6E-06 47.6 12.1 62 49-114 124-190 (381)
55 PRK06996 hypothetical protein; 96.0 0.59 1.3E-05 43.3 16.8 53 58-111 116-171 (398)
56 TIGR03329 Phn_aa_oxid putative 96.0 0.18 4E-06 47.7 13.5 77 214-302 317-393 (460)
57 PRK05714 2-octaprenyl-3-methyl 95.9 1 2.2E-05 41.7 18.2 58 58-119 113-174 (405)
58 PRK06183 mhpA 3-(3-hydroxyphen 95.8 2.1 4.5E-05 41.5 20.1 47 68-115 128-175 (538)
59 PRK08020 ubiF 2-octaprenyl-3-m 95.7 0.85 1.8E-05 42.0 16.7 52 59-114 114-169 (391)
60 COG0644 FixC Dehydrogenases (f 95.7 1.7 3.7E-05 40.2 22.2 57 54-113 95-151 (396)
61 COG2081 Predicted flavoprotein 95.6 0.038 8.3E-07 50.2 6.8 61 47-111 101-164 (408)
62 PRK08849 2-octaprenyl-3-methyl 95.6 0.97 2.1E-05 41.6 16.4 43 69-115 126-168 (384)
63 PRK11259 solA N-methyltryptoph 95.6 0.92 2E-05 41.4 16.1 62 48-114 137-204 (376)
64 PRK06184 hypothetical protein; 95.5 2.5 5.5E-05 40.4 20.8 47 68-115 123-169 (502)
65 PRK08850 2-octaprenyl-6-methox 95.2 0.99 2.1E-05 41.9 15.2 52 59-114 113-168 (405)
66 PF01266 DAO: FAD dependent ox 95.0 0.074 1.6E-06 47.9 7.0 64 46-114 133-203 (358)
67 PRK01747 mnmC bifunctional tRN 94.9 0.79 1.7E-05 45.6 14.5 63 48-114 396-463 (662)
68 PRK07190 hypothetical protein; 94.9 3.7 8E-05 39.2 19.8 45 67-115 122-166 (487)
69 PRK08013 oxidoreductase; Provi 94.9 2.6 5.7E-05 39.0 17.0 52 59-114 113-168 (400)
70 PRK06126 hypothetical protein; 94.8 4.2 9.2E-05 39.3 20.5 46 69-115 142-189 (545)
71 PRK07608 ubiquinone biosynthes 94.6 2.4 5.2E-05 38.8 16.1 51 58-113 112-166 (388)
72 PF03486 HI0933_like: HI0933-l 94.6 0.14 3.1E-06 47.6 7.7 63 47-112 99-164 (409)
73 PRK07045 putative monooxygenas 94.4 4.1 8.9E-05 37.4 21.1 54 58-114 107-165 (388)
74 PF05834 Lycopene_cycl: Lycope 94.2 4.4 9.5E-05 37.2 18.6 53 59-115 89-143 (374)
75 PF13454 NAD_binding_9: FAD-NA 93.6 0.32 7E-06 38.7 7.0 36 72-111 119-154 (156)
76 PF06039 Mqo: Malate:quinone o 93.4 0.39 8.5E-06 44.8 7.9 61 56-116 180-246 (488)
77 PRK10015 oxidoreductase; Provi 93.3 7.3 0.00016 36.6 20.5 35 271-305 294-336 (429)
78 TIGR03862 flavo_PP4765 unchara 93.2 0.37 8E-06 44.3 7.5 62 47-113 76-140 (376)
79 COG0665 DadA Glycine/D-amino a 93.0 4.6 9.9E-05 36.9 14.8 63 48-115 144-213 (387)
80 COG0579 Predicted dehydrogenas 93.0 0.35 7.6E-06 45.1 7.1 65 49-115 142-212 (429)
81 TIGR01989 COQ6 Ubiquinone bios 92.3 3.6 7.8E-05 38.6 13.3 43 69-115 135-184 (437)
82 PF00743 FMO-like: Flavin-bind 92.0 0.47 1E-05 45.8 6.9 58 56-114 86-150 (531)
83 PRK06753 hypothetical protein; 91.1 12 0.00025 34.1 22.0 54 57-114 98-152 (373)
84 PRK06617 2-octaprenyl-6-methox 90.9 13 0.00027 34.1 16.9 53 57-114 104-160 (374)
85 PRK07538 hypothetical protein; 90.7 14 0.00031 34.3 18.2 56 59-115 108-166 (413)
86 TIGR01320 mal_quin_oxido malat 90.6 1.2 2.7E-05 42.5 8.2 67 48-114 166-240 (483)
87 TIGR03219 salicylate_mono sali 90.6 0.73 1.6E-05 42.9 6.6 54 58-115 106-160 (414)
88 PLN02172 flavin-containing mon 90.5 1 2.2E-05 42.7 7.5 56 57-113 111-172 (461)
89 PTZ00383 malate:quinone oxidor 90.5 1.1 2.4E-05 42.8 7.7 55 57-115 211-274 (497)
90 PLN02463 lycopene beta cyclase 90.3 17 0.00036 34.4 18.5 40 69-113 129-168 (447)
91 PRK07236 hypothetical protein; 90.2 0.88 1.9E-05 41.9 6.7 54 55-112 98-152 (386)
92 PRK05329 anaerobic glycerol-3- 89.9 1.4 2.9E-05 41.3 7.7 56 55-113 258-317 (422)
93 PRK11728 hydroxyglutarate oxid 89.7 1.2 2.5E-05 41.2 7.1 62 48-114 137-204 (393)
94 PRK13339 malate:quinone oxidor 89.4 1.3 2.8E-05 42.4 7.3 66 48-114 172-247 (497)
95 TIGR01790 carotene-cycl lycope 89.4 17 0.00036 33.3 20.7 52 59-114 87-141 (388)
96 TIGR02485 CobZ_N-term precorri 89.3 1.8 3.9E-05 40.6 8.2 58 53-112 119-181 (432)
97 PRK09897 hypothetical protein; 88.7 1.5 3.3E-05 42.3 7.3 53 57-112 107-164 (534)
98 TIGR01373 soxB sarcosine oxida 88.5 20 0.00044 33.0 19.6 77 213-302 308-384 (407)
99 PRK05257 malate:quinone oxidor 88.5 2.3 5E-05 40.7 8.2 67 48-114 171-246 (494)
100 COG2509 Uncharacterized FAD-de 87.8 1.7 3.6E-05 40.5 6.5 54 56-112 172-228 (486)
101 KOG2404 Fumarate reductase, fl 87.7 0.95 2.1E-05 40.3 4.6 46 70-115 161-207 (477)
102 TIGR00275 flavoprotein, HI0933 87.0 2.8 6.1E-05 38.9 7.8 61 49-114 97-160 (400)
103 TIGR01377 soxA_mon sarcosine o 86.8 2.2 4.7E-05 39.0 6.9 61 48-113 133-199 (380)
104 PRK06175 L-aspartate oxidase; 86.8 2.1 4.5E-05 40.3 6.8 55 58-112 129-187 (433)
105 PRK12409 D-amino acid dehydrog 86.8 2.1 4.6E-05 39.7 6.9 65 49-114 186-258 (410)
106 PRK07588 hypothetical protein; 86.7 2.1 4.5E-05 39.4 6.8 53 58-114 104-158 (391)
107 PRK12845 3-ketosteroid-delta-1 86.7 2.2 4.7E-05 41.6 7.1 62 52-114 213-278 (564)
108 PRK08243 4-hydroxybenzoate 3-m 86.7 26 0.00056 32.3 17.5 54 59-114 105-163 (392)
109 PRK05868 hypothetical protein; 86.5 26 0.00056 32.1 21.5 53 58-114 106-160 (372)
110 PF13434 K_oxygenase: L-lysine 85.9 1.7 3.8E-05 39.4 5.7 42 70-111 295-338 (341)
111 PRK06475 salicylate hydroxylas 85.9 2.3 5.1E-05 39.3 6.7 57 58-115 108-168 (400)
112 TIGR03378 glycerol3P_GlpB glyc 85.9 2.7 5.9E-05 39.2 6.9 60 59-120 265-328 (419)
113 PRK06134 putative FAD-binding 85.8 2.5 5.5E-05 41.3 7.1 56 59-114 219-278 (581)
114 TIGR02053 MerA mercuric reduct 85.5 2.9 6.3E-05 39.6 7.2 46 67-113 220-265 (463)
115 PF00890 FAD_binding_2: FAD bi 85.2 2.8 6.1E-05 38.9 6.9 61 55-115 139-204 (417)
116 PRK06416 dihydrolipoamide dehy 84.8 3.4 7.4E-05 39.1 7.3 48 66-114 225-272 (462)
117 PRK06370 mercuric reductase; V 84.7 3.5 7.7E-05 39.0 7.4 46 67-113 225-270 (463)
118 PRK08274 tricarballylate dehyd 84.7 4 8.8E-05 38.6 7.8 61 52-112 126-190 (466)
119 PF00996 GDI: GDP dissociation 83.5 4 8.7E-05 38.3 7.0 59 48-109 223-284 (438)
120 PRK04965 NADH:flavorubredoxin 83.2 4.1 8.9E-05 37.4 6.9 43 66-112 195-237 (377)
121 PF00070 Pyr_redox: Pyridine n 82.4 4 8.7E-05 28.1 5.1 38 54-92 40-77 (80)
122 PRK08294 phenol 2-monooxygenas 82.4 55 0.0012 32.5 22.8 46 70-115 159-211 (634)
123 TIGR01292 TRX_reduct thioredox 82.2 4.3 9.4E-05 35.4 6.5 51 58-113 58-111 (300)
124 PF13434 K_oxygenase: L-lysine 82.0 3.1 6.7E-05 37.8 5.5 54 58-111 99-156 (341)
125 PRK08163 salicylate hydroxylas 81.6 4.1 8.9E-05 37.5 6.4 52 59-114 111-166 (396)
126 PRK11445 putative oxidoreducta 81.4 41 0.0009 30.4 21.4 44 69-114 113-157 (351)
127 TIGR03862 flavo_PP4765 unchara 81.2 2 4.4E-05 39.5 4.0 37 268-304 333-375 (376)
128 PRK06116 glutathione reductase 81.0 5.2 0.00011 37.7 6.9 42 68-112 222-263 (450)
129 PRK07818 dihydrolipoamide dehy 80.8 6.6 0.00014 37.2 7.6 44 68-112 227-271 (466)
130 COG2081 Predicted flavoprotein 80.8 1.8 3.9E-05 39.7 3.5 35 270-304 367-407 (408)
131 PLN02927 antheraxanthin epoxid 80.2 5.2 0.00011 39.8 6.7 54 57-114 194-248 (668)
132 PRK07121 hypothetical protein; 80.1 7.4 0.00016 37.2 7.7 59 56-114 176-239 (492)
133 PRK13512 coenzyme A disulfide 79.6 5.2 0.00011 37.6 6.4 51 62-113 66-116 (438)
134 PLN02507 glutathione reductase 79.3 6.7 0.00014 37.6 7.1 43 67-113 257-299 (499)
135 TIGR01424 gluta_reduc_2 glutat 79.2 6.6 0.00014 37.0 6.9 42 68-113 221-262 (446)
136 PRK06327 dihydrolipoamide dehy 79.1 7.7 0.00017 36.9 7.4 45 68-113 238-283 (475)
137 PRK12842 putative succinate de 78.9 7 0.00015 38.2 7.2 58 57-114 214-275 (574)
138 PRK07845 flavoprotein disulfid 78.7 6.3 0.00014 37.4 6.7 42 68-113 232-273 (466)
139 TIGR03364 HpnW_proposed FAD de 78.4 5.1 0.00011 36.4 5.8 48 58-114 146-197 (365)
140 TIGR01350 lipoamide_DH dihydro 78.2 7.6 0.00017 36.6 7.1 44 68-114 225-269 (461)
141 PF00732 GMC_oxred_N: GMC oxid 78.0 2.2 4.9E-05 37.5 3.3 50 70-119 209-263 (296)
142 PRK12837 3-ketosteroid-delta-1 77.9 7 0.00015 37.6 6.8 55 59-113 175-234 (513)
143 TIGR01421 gluta_reduc_1 glutat 77.9 8.5 0.00019 36.3 7.3 45 68-114 221-265 (450)
144 TIGR00551 nadB L-aspartate oxi 77.6 7 0.00015 37.3 6.7 57 58-114 129-189 (488)
145 PRK10157 putative oxidoreducta 77.0 10 0.00022 35.5 7.5 56 54-113 108-163 (428)
146 PRK06481 fumarate reductase fl 76.9 8.2 0.00018 37.1 7.0 55 58-112 191-249 (506)
147 PRK05249 soluble pyridine nucl 76.4 8.2 0.00018 36.4 6.8 43 68-114 230-272 (461)
148 TIGR02023 BchP-ChlP geranylger 76.4 63 0.0014 29.7 22.3 34 272-305 264-303 (388)
149 TIGR03140 AhpF alkyl hydropero 76.2 8.1 0.00018 37.2 6.7 52 58-113 268-322 (515)
150 PRK07512 L-aspartate oxidase; 75.7 6.3 0.00014 38.0 5.8 57 58-114 137-197 (513)
151 COG1249 Lpd Pyruvate/2-oxoglut 75.1 9.2 0.0002 36.2 6.6 43 68-112 228-270 (454)
152 PRK13984 putative oxidoreducta 74.6 4 8.7E-05 40.1 4.3 37 270-306 567-603 (604)
153 TIGR03377 glycerol3P_GlpA glyc 74.6 8.4 0.00018 37.1 6.4 58 57-114 128-190 (516)
154 PRK09754 phenylpropionate diox 74.5 10 0.00023 35.0 6.8 42 67-113 199-240 (396)
155 PRK07843 3-ketosteroid-delta-1 74.4 11 0.00024 36.7 7.2 55 59-113 210-268 (557)
156 PRK13977 myosin-cross-reactive 74.3 12 0.00027 36.3 7.3 57 56-112 225-291 (576)
157 PRK14989 nitrite reductase sub 74.3 10 0.00022 39.0 7.1 59 53-114 186-245 (847)
158 PF01494 FAD_binding_3: FAD bi 74.1 13 0.00028 33.1 7.2 55 59-114 113-172 (356)
159 PRK12844 3-ketosteroid-delta-1 74.0 10 0.00022 36.9 6.9 57 58-114 209-269 (557)
160 PRK06467 dihydrolipoamide dehy 73.9 9.7 0.00021 36.2 6.6 45 69-114 229-274 (471)
161 PRK04176 ribulose-1,5-biphosph 73.8 4.7 0.0001 35.0 4.1 37 270-306 212-256 (257)
162 PRK07251 pyridine nucleotide-d 73.5 11 0.00025 35.2 6.9 42 66-112 210-251 (438)
163 PRK12843 putative FAD-binding 73.3 11 0.00024 36.9 6.9 56 58-114 222-282 (578)
164 TIGR01813 flavo_cyto_c flavocy 73.1 15 0.00033 34.3 7.7 56 58-113 131-191 (439)
165 PRK15317 alkyl hydroperoxide r 73.1 12 0.00026 36.0 7.1 52 58-113 267-321 (517)
166 PRK12835 3-ketosteroid-delta-1 72.8 15 0.00032 36.1 7.6 57 58-114 214-275 (584)
167 PLN00093 geranylgeranyl diphos 72.1 90 0.002 29.5 21.9 34 272-305 309-348 (450)
168 PRK06115 dihydrolipoamide dehy 72.0 16 0.00034 34.7 7.5 45 68-113 229-275 (466)
169 PRK14727 putative mercuric red 71.5 14 0.00029 35.3 7.0 43 68-115 242-284 (479)
170 TIGR00292 thiazole biosynthesi 71.3 5.6 0.00012 34.5 3.9 36 270-305 211-254 (254)
171 TIGR03385 CoA_CoA_reduc CoA-di 71.3 11 0.00024 35.1 6.2 47 63-112 53-101 (427)
172 PRK07846 mycothione reductase; 71.1 13 0.00027 35.2 6.6 43 69-115 221-263 (451)
173 PRK14694 putative mercuric red 71.1 14 0.00031 35.0 7.0 42 68-114 232-273 (468)
174 TIGR03452 mycothione_red mycot 71.0 14 0.00031 34.8 6.9 43 69-115 224-266 (452)
175 PRK12809 putative oxidoreducta 70.6 6.3 0.00014 39.1 4.6 39 270-308 599-638 (639)
176 TIGR02374 nitri_red_nirB nitri 70.5 13 0.00029 37.8 7.0 55 55-113 183-237 (785)
177 TIGR01438 TGR thioredoxin and 70.4 16 0.00035 34.9 7.2 45 68-113 234-278 (484)
178 PRK06912 acoL dihydrolipoamide 69.8 18 0.00039 34.2 7.3 43 68-113 225-267 (458)
179 PRK08010 pyridine nucleotide-d 69.7 15 0.00032 34.5 6.7 40 68-112 213-252 (441)
180 PRK12266 glpD glycerol-3-phosp 68.8 14 0.00031 35.5 6.5 56 58-114 156-216 (508)
181 KOG1399 Flavin-containing mono 68.7 17 0.00037 34.3 6.8 58 56-113 92-152 (448)
182 PRK12839 hypothetical protein; 68.5 19 0.00041 35.2 7.3 57 58-114 215-276 (572)
183 COG1635 THI4 Ribulose 1,5-bisp 68.4 5.5 0.00012 33.7 3.1 37 270-306 217-261 (262)
184 PTZ00058 glutathione reductase 68.4 22 0.00048 34.7 7.7 43 68-112 292-334 (561)
185 PRK11101 glpA sn-glycerol-3-ph 68.3 16 0.00034 35.6 6.7 57 58-114 150-211 (546)
186 PRK10157 putative oxidoreducta 68.1 7.3 0.00016 36.5 4.3 36 271-306 294-337 (428)
187 COG1252 Ndh NADH dehydrogenase 67.8 13 0.00029 34.5 5.7 54 52-112 207-260 (405)
188 PRK06263 sdhA succinate dehydr 67.7 17 0.00036 35.3 6.7 57 58-114 135-197 (543)
189 KOG1439 RAB proteins geranylge 67.6 14 0.0003 34.1 5.6 59 49-110 224-285 (440)
190 COG2072 TrkA Predicted flavopr 67.4 16 0.00034 34.5 6.4 41 70-112 100-142 (443)
191 PRK12831 putative oxidoreducta 67.3 8.6 0.00019 36.5 4.6 37 270-306 425-462 (464)
192 TIGR01423 trypano_reduc trypan 67.3 19 0.00042 34.4 7.0 42 68-112 245-286 (486)
193 PRK05976 dihydrolipoamide dehy 67.2 25 0.00053 33.4 7.7 46 67-114 234-281 (472)
194 PRK12770 putative glutamate sy 67.1 9.6 0.00021 34.6 4.8 36 270-305 314-350 (352)
195 PRK09564 coenzyme A disulfide 66.8 19 0.0004 33.8 6.8 44 65-113 202-245 (444)
196 PRK12834 putative FAD-binding 66.7 21 0.00046 34.6 7.3 33 270-302 503-548 (549)
197 KOG1335 Dihydrolipoamide dehyd 66.4 25 0.00055 32.4 7.0 43 70-112 268-312 (506)
198 PRK13369 glycerol-3-phosphate 66.3 17 0.00037 34.8 6.5 56 58-114 156-215 (502)
199 PRK04965 NADH:flavorubredoxin 66.2 17 0.00037 33.3 6.3 45 62-113 66-110 (377)
200 PRK12771 putative glutamate sy 65.9 9.3 0.0002 37.2 4.7 38 270-307 408-446 (564)
201 PTZ00052 thioredoxin reductase 65.7 20 0.00043 34.4 6.8 44 68-115 236-279 (499)
202 TIGR02028 ChlP geranylgeranyl 65.4 10 0.00022 35.2 4.6 34 272-305 270-309 (398)
203 COG3486 IucD Lysine/ornithine 65.3 12 0.00026 34.5 4.8 58 56-113 274-339 (436)
204 PRK12769 putative oxidoreducta 65.2 9.3 0.0002 38.0 4.6 37 270-306 616-653 (654)
205 PRK12810 gltD glutamate syntha 64.5 10 0.00023 36.0 4.6 37 270-306 429-466 (471)
206 PF12831 FAD_oxidored: FAD dep 64.5 2.2 4.7E-05 40.0 0.0 65 55-119 91-155 (428)
207 PRK13748 putative mercuric red 64.2 22 0.00047 34.6 6.9 42 68-114 324-365 (561)
208 TIGR01316 gltA glutamate synth 63.8 9.7 0.00021 35.9 4.2 35 270-304 414-449 (449)
209 TIGR03385 CoA_CoA_reduc CoA-di 63.4 24 0.00052 32.9 6.8 42 66-113 191-232 (427)
210 PF07992 Pyr_redox_2: Pyridine 63.2 21 0.00045 29.0 5.7 45 69-113 73-121 (201)
211 TIGR02462 pyranose_ox pyranose 63.0 20 0.00043 34.8 6.2 50 70-119 230-284 (544)
212 TIGR03169 Nterm_to_SelD pyridi 62.9 20 0.00044 32.5 6.1 50 56-113 193-242 (364)
213 KOG1346 Programmed cell death 61.9 13 0.00028 34.6 4.3 69 47-119 378-454 (659)
214 PRK08071 L-aspartate oxidase; 61.9 22 0.00047 34.3 6.3 57 58-114 131-190 (510)
215 TIGR01317 GOGAT_sm_gam glutama 61.2 15 0.00031 35.2 4.9 38 270-307 443-481 (485)
216 PF01134 GIDA: Glucose inhibit 60.7 30 0.00066 32.0 6.7 58 51-112 92-150 (392)
217 TIGR01811 sdhA_Bsu succinate d 60.6 35 0.00076 33.6 7.6 46 68-113 147-195 (603)
218 PRK06292 dihydrolipoamide dehy 60.5 32 0.0007 32.4 7.2 44 69-113 224-267 (460)
219 PLN02661 Putative thiazole syn 60.4 11 0.00024 34.3 3.8 37 270-306 285-329 (357)
220 PRK11749 dihydropyrimidine deh 59.6 13 0.00029 35.1 4.3 37 270-306 416-453 (457)
221 TIGR01816 sdhA_forward succina 59.4 34 0.00073 33.4 7.2 57 58-114 120-181 (565)
222 PRK09564 coenzyme A disulfide 59.4 26 0.00056 32.8 6.3 43 68-113 70-114 (444)
223 PRK12775 putative trifunctiona 59.2 16 0.00034 38.4 5.1 38 270-307 719-757 (1006)
224 TIGR01292 TRX_reduct thioredox 59.1 11 0.00023 32.9 3.4 35 270-304 264-300 (300)
225 PRK07573 sdhA succinate dehydr 58.8 38 0.00083 33.6 7.5 47 68-114 184-232 (640)
226 PF04820 Trp_halogenase: Trypt 58.5 44 0.00095 31.7 7.6 63 49-114 148-211 (454)
227 TIGR02374 nitri_red_nirB nitri 58.5 22 0.00049 36.2 6.0 42 66-113 66-107 (785)
228 PF03486 HI0933_like: HI0933-l 58.4 8.6 0.00019 35.9 2.8 33 266-298 370-408 (409)
229 TIGR01318 gltD_gamma_fam gluta 57.9 17 0.00036 34.6 4.7 36 270-305 430-466 (467)
230 PRK07395 L-aspartate oxidase; 56.2 23 0.0005 34.5 5.4 55 58-113 135-196 (553)
231 PRK12778 putative bifunctional 55.9 16 0.00035 37.0 4.5 37 270-306 714-751 (752)
232 PLN02697 lycopene epsilon cycl 55.8 2E+02 0.0044 27.9 22.2 53 58-114 193-248 (529)
233 TIGR03169 Nterm_to_SelD pyridi 55.8 22 0.00049 32.2 5.1 36 270-305 270-311 (364)
234 PRK09754 phenylpropionate diox 55.6 30 0.00065 31.9 5.9 40 68-113 72-111 (396)
235 PRK09078 sdhA succinate dehydr 55.2 63 0.0014 31.8 8.3 57 58-114 150-212 (598)
236 TIGR01812 sdhA_frdA_Gneg succi 55.2 43 0.00094 32.6 7.2 56 59-114 131-191 (566)
237 PRK07804 L-aspartate oxidase; 55.0 49 0.0011 32.1 7.5 57 58-114 145-210 (541)
238 TIGR00275 flavoprotein, HI0933 54.5 11 0.00023 35.1 2.7 28 270-297 366-399 (400)
239 PTZ00318 NADH dehydrogenase-li 54.0 38 0.00083 31.6 6.4 40 65-112 239-278 (424)
240 PRK12779 putative bifunctional 54.0 19 0.00041 37.6 4.6 36 270-305 591-627 (944)
241 KOG2844 Dimethylglycine dehydr 53.5 28 0.00062 34.4 5.3 65 46-114 173-243 (856)
242 TIGR01789 lycopene_cycl lycope 53.3 31 0.00067 31.6 5.6 48 58-113 90-137 (370)
243 PRK06854 adenylylsulfate reduc 52.8 50 0.0011 32.6 7.2 56 59-114 134-195 (608)
244 PRK10262 thioredoxin reductase 52.8 50 0.0011 29.4 6.7 55 59-113 187-247 (321)
245 PRK06452 sdhA succinate dehydr 52.7 44 0.00095 32.6 6.8 57 58-114 137-198 (566)
246 PLN02815 L-aspartate oxidase 52.1 42 0.00091 33.1 6.5 57 58-114 156-222 (594)
247 PLN02464 glycerol-3-phosphate 52.0 53 0.0011 32.6 7.2 58 57-114 232-296 (627)
248 PRK08626 fumarate reductase fl 51.0 61 0.0013 32.4 7.5 57 58-114 159-220 (657)
249 PRK06069 sdhA succinate dehydr 50.7 52 0.0011 32.2 6.9 56 59-114 139-200 (577)
250 TIGR01810 betA choline dehydro 50.6 31 0.00068 33.3 5.4 50 69-118 209-259 (532)
251 KOG2820 FAD-dependent oxidored 50.5 2E+02 0.0044 26.3 16.8 55 65-121 164-218 (399)
252 PRK12814 putative NADPH-depend 50.0 26 0.00056 34.9 4.8 37 270-306 465-502 (652)
253 PLN02546 glutathione reductase 50.0 62 0.0013 31.6 7.3 46 67-115 306-351 (558)
254 PRK08205 sdhA succinate dehydr 49.4 69 0.0015 31.4 7.6 57 58-114 141-206 (583)
255 PRK06481 fumarate reductase fl 48.5 19 0.00041 34.6 3.5 35 270-304 460-503 (506)
256 COG1251 NirB NAD(P)H-nitrite r 47.9 28 0.00061 34.8 4.4 56 54-115 56-114 (793)
257 TIGR03315 Se_ygfK putative sel 47.8 25 0.00054 36.8 4.3 34 270-303 804-838 (1012)
258 PRK08274 tricarballylate dehyd 47.7 22 0.00049 33.5 3.8 36 270-305 417-462 (466)
259 PRK05945 sdhA succinate dehydr 47.7 72 0.0016 31.2 7.4 57 58-114 136-197 (575)
260 KOG1336 Monodehydroascorbate/f 46.7 44 0.00094 31.6 5.3 64 54-120 255-319 (478)
261 PRK07121 hypothetical protein; 46.3 23 0.0005 33.8 3.7 33 270-302 448-489 (492)
262 PRK14989 nitrite reductase sub 46.2 46 0.001 34.3 6.0 41 67-113 72-112 (847)
263 PTZ00139 Succinate dehydrogena 46.2 74 0.0016 31.5 7.2 56 58-113 167-228 (617)
264 PRK04176 ribulose-1,5-biphosph 46.0 68 0.0015 27.7 6.3 56 57-112 104-171 (257)
265 PRK07803 sdhA succinate dehydr 45.7 74 0.0016 31.6 7.2 44 69-112 166-211 (626)
266 PRK08275 putative oxidoreducta 45.6 88 0.0019 30.5 7.6 56 59-114 139-200 (554)
267 COG0445 GidA Flavin-dependent 44.9 58 0.0013 31.6 5.9 43 73-118 119-162 (621)
268 PRK10262 thioredoxin reductase 44.5 18 0.00039 32.2 2.5 39 270-308 278-318 (321)
269 PRK05675 sdhA succinate dehydr 44.4 1.3E+02 0.0028 29.4 8.6 57 58-114 127-189 (570)
270 PRK02106 choline dehydrogenase 44.2 38 0.00082 33.0 4.9 50 69-118 216-266 (560)
271 PTZ00306 NADH-dependent fumara 44.2 71 0.0015 34.3 7.2 38 270-307 859-905 (1167)
272 TIGR03140 AhpF alkyl hydropero 44.1 57 0.0012 31.4 6.0 46 68-113 402-449 (515)
273 PRK09231 fumarate reductase fl 44.1 72 0.0016 31.3 6.8 57 58-114 134-196 (582)
274 PRK12844 3-ketosteroid-delta-1 44.1 25 0.00053 34.3 3.5 35 270-304 506-550 (557)
275 TIGR01372 soxA sarcosine oxida 42.5 34 0.00074 35.9 4.5 35 271-305 438-472 (985)
276 PF01134 GIDA: Glucose inhibit 42.1 38 0.00083 31.4 4.2 40 266-305 350-389 (392)
277 KOG1336 Monodehydroascorbate/f 42.1 47 0.001 31.4 4.8 56 51-112 124-179 (478)
278 PRK13512 coenzyme A disulfide 41.7 77 0.0017 29.7 6.4 39 68-114 203-241 (438)
279 PTZ00306 NADH-dependent fumara 41.2 28 0.0006 37.3 3.6 47 68-114 561-620 (1167)
280 PRK05335 tRNA (uracil-5-)-meth 40.7 44 0.00095 31.4 4.4 35 270-304 329-363 (436)
281 TIGR02360 pbenz_hydroxyl 4-hyd 40.2 1E+02 0.0022 28.4 6.8 61 57-119 103-169 (390)
282 PRK12835 3-ketosteroid-delta-1 40.0 37 0.00081 33.3 4.1 35 270-304 526-570 (584)
283 PRK12842 putative succinate de 39.5 35 0.00076 33.4 3.8 35 270-304 523-567 (574)
284 PRK09853 putative selenate red 39.3 41 0.00089 35.3 4.4 36 270-305 806-842 (1019)
285 PRK08958 sdhA succinate dehydr 39.3 1.3E+02 0.0027 29.7 7.6 57 58-114 144-206 (588)
286 PRK07057 sdhA succinate dehydr 39.1 1.3E+02 0.0027 29.7 7.6 57 58-114 149-211 (591)
287 PRK09077 L-aspartate oxidase; 38.7 88 0.0019 30.3 6.4 66 49-114 129-207 (536)
288 TIGR00292 thiazole biosynthesi 37.7 1.4E+02 0.0031 25.7 7.0 56 58-113 101-169 (254)
289 PLN02852 ferredoxin-NADP+ redu 37.3 38 0.00082 32.5 3.6 37 270-306 385-423 (491)
290 PF06100 Strep_67kDa_ant: Stre 36.9 1.4E+02 0.0031 28.5 7.2 56 54-110 204-270 (500)
291 TIGR01421 gluta_reduc_1 glutat 36.8 51 0.0011 31.1 4.4 33 270-302 294-327 (450)
292 PRK15317 alkyl hydroperoxide r 36.3 99 0.0021 29.8 6.3 46 68-113 401-448 (517)
293 TIGR01176 fum_red_Fp fumarate 36.1 1.2E+02 0.0027 29.7 7.0 57 58-114 133-195 (580)
294 COG0446 HcaD Uncharacterized N 36.0 95 0.0021 28.2 6.0 55 57-114 178-237 (415)
295 PRK12834 putative FAD-binding 35.8 36 0.00079 33.0 3.3 46 69-114 167-227 (549)
296 TIGR02485 CobZ_N-term precorri 35.3 46 0.00099 31.1 3.8 34 270-303 386-429 (432)
297 PRK06116 glutathione reductase 34.8 56 0.0012 30.7 4.3 33 270-302 294-327 (450)
298 PRK12845 3-ketosteroid-delta-1 34.5 42 0.0009 32.8 3.4 33 270-302 521-563 (564)
299 PRK06134 putative FAD-binding 34.2 38 0.00082 33.2 3.1 35 270-304 527-571 (581)
300 PRK06263 sdhA succinate dehydr 34.2 49 0.0011 32.1 3.9 35 270-304 360-403 (543)
301 PRK07843 3-ketosteroid-delta-1 34.1 41 0.00089 32.8 3.3 33 270-302 513-555 (557)
302 PRK06069 sdhA succinate dehydr 34.0 41 0.0009 32.9 3.4 34 271-304 371-414 (577)
303 PLN02661 Putative thiazole syn 33.6 1.3E+02 0.0029 27.5 6.3 44 69-112 188-242 (357)
304 TIGR00136 gidA glucose-inhibit 33.4 55 0.0012 32.3 4.0 39 264-302 350-388 (617)
305 PRK08401 L-aspartate oxidase; 33.3 1.3E+02 0.0029 28.4 6.6 52 58-114 121-175 (466)
306 COG1249 Lpd Pyruvate/2-oxoglut 32.9 62 0.0014 30.7 4.2 33 270-302 301-334 (454)
307 PRK08958 sdhA succinate dehydr 32.6 52 0.0011 32.3 3.8 35 270-304 379-423 (588)
308 PTZ00153 lipoamide dehydrogena 32.1 1.3E+02 0.0027 30.2 6.3 48 67-114 367-427 (659)
309 PRK08641 sdhA succinate dehydr 32.1 54 0.0012 32.2 3.8 56 59-114 135-200 (589)
310 PRK07803 sdhA succinate dehydr 32.0 57 0.0012 32.3 4.0 35 270-304 404-447 (626)
311 PLN00128 Succinate dehydrogena 31.8 1.5E+02 0.0033 29.5 6.9 56 59-114 189-250 (635)
312 COG2303 BetA Choline dehydroge 31.7 81 0.0018 30.7 4.9 49 70-118 219-270 (542)
313 COG0578 GlpA Glycerol-3-phosph 31.6 1.7E+02 0.0037 28.4 6.9 47 68-115 178-226 (532)
314 PRK06327 dihydrolipoamide dehy 31.6 1.3E+02 0.0029 28.5 6.3 33 270-302 313-346 (475)
315 PRK12839 hypothetical protein; 31.2 51 0.0011 32.3 3.5 34 270-303 524-567 (572)
316 COG1251 NirB NAD(P)H-nitrite r 31.1 51 0.0011 33.1 3.3 41 68-112 201-241 (793)
317 PF01494 FAD_binding_3: FAD bi 31.0 60 0.0013 28.7 3.7 33 272-304 291-329 (356)
318 COG0492 TrxB Thioredoxin reduc 30.4 1.7E+02 0.0038 26.0 6.4 38 270-307 264-303 (305)
319 PRK09231 fumarate reductase fl 30.1 59 0.0013 31.9 3.7 35 270-304 370-414 (582)
320 PTZ00318 NADH dehydrogenase-li 30.1 88 0.0019 29.2 4.7 36 270-305 307-348 (424)
321 PRK11749 dihydropyrimidine deh 29.9 1.5E+02 0.0032 28.0 6.3 46 67-112 324-385 (457)
322 PRK05675 sdhA succinate dehydr 29.9 69 0.0015 31.3 4.1 35 270-304 361-405 (570)
323 PRK05945 sdhA succinate dehydr 29.8 73 0.0016 31.2 4.3 35 270-304 369-413 (575)
324 PRK08641 sdhA succinate dehydr 29.5 2.1E+02 0.0046 28.1 7.5 35 270-304 367-410 (589)
325 TIGR01424 gluta_reduc_2 glutat 29.5 73 0.0016 29.9 4.1 33 270-302 292-325 (446)
326 TIGR01816 sdhA_forward succina 29.3 67 0.0015 31.4 3.9 35 270-304 352-396 (565)
327 PRK05192 tRNA uridine 5-carbox 28.8 1.3E+02 0.0027 29.9 5.6 41 70-114 117-157 (618)
328 PRK12810 gltD glutamate syntha 28.5 2.1E+02 0.0045 27.2 7.0 45 68-112 343-398 (471)
329 PRK08818 prephenate dehydrogen 28.3 30 0.00065 31.8 1.3 63 51-121 8-70 (370)
330 PRK09078 sdhA succinate dehydr 28.2 76 0.0016 31.3 4.1 35 270-304 384-428 (598)
331 PRK12837 3-ketosteroid-delta-1 27.8 49 0.0011 31.8 2.7 33 270-302 468-510 (513)
332 TIGR01812 sdhA_frdA_Gneg succi 27.8 72 0.0016 31.1 3.9 35 270-304 358-402 (566)
333 PRK12843 putative FAD-binding 27.7 71 0.0015 31.3 3.8 35 270-304 528-572 (578)
334 PRK06175 L-aspartate oxidase; 27.4 67 0.0015 30.2 3.4 34 270-303 343-386 (433)
335 KOG3851 Sulfide:quinone oxidor 27.1 18 0.0004 32.4 -0.4 71 43-119 75-150 (446)
336 TIGR00136 gidA glucose-inhibit 26.8 2.1E+02 0.0046 28.3 6.7 42 70-115 113-155 (617)
337 TIGR03143 AhpF_homolog putativ 26.7 79 0.0017 30.8 3.9 36 270-305 272-309 (555)
338 TIGR00137 gid_trmFO tRNA:m(5)U 26.5 1.2E+02 0.0026 28.6 4.8 39 263-301 321-359 (433)
339 TIGR00551 nadB L-aspartate oxi 26.2 74 0.0016 30.4 3.6 34 270-303 345-388 (488)
340 COG1148 HdrA Heterodisulfide r 24.7 2.4E+02 0.0051 27.2 6.3 34 271-304 511-544 (622)
341 PRK12771 putative glutamate sy 24.4 2.1E+02 0.0046 27.8 6.4 46 68-113 319-379 (564)
342 PF14443 DBC1: DBC1 24.3 1.6E+02 0.0034 22.5 4.2 35 198-232 20-58 (126)
343 PLN02985 squalene monooxygenas 24.2 3E+02 0.0065 26.5 7.3 56 58-114 148-208 (514)
344 PLN02507 glutathione reductase 24.2 1E+02 0.0022 29.6 4.1 33 270-302 329-362 (499)
345 PLN00128 Succinate dehydrogena 24.1 1.1E+02 0.0023 30.6 4.3 35 270-304 422-466 (635)
346 PRK08626 fumarate reductase fl 23.9 92 0.002 31.1 3.8 34 271-304 386-429 (657)
347 PRK05192 tRNA uridine 5-carbox 23.7 3.3E+02 0.0072 27.1 7.4 39 262-300 350-392 (618)
348 PRK05329 anaerobic glycerol-3- 23.6 1E+02 0.0023 28.9 3.9 34 271-304 380-420 (422)
349 COG0492 TrxB Thioredoxin reduc 23.5 1E+02 0.0023 27.4 3.7 52 58-115 62-116 (305)
350 PTZ00139 Succinate dehydrogena 23.4 93 0.002 30.8 3.7 35 270-304 401-445 (617)
351 COG2086 FixA Electron transfer 22.8 3.5E+02 0.0076 23.6 6.7 61 50-112 120-181 (260)
352 TIGR03143 AhpF_homolog putativ 22.8 2.5E+02 0.0055 27.3 6.6 49 58-112 61-112 (555)
353 PRK06416 dihydrolipoamide dehy 22.6 1.1E+02 0.0024 28.9 3.9 33 270-302 300-333 (462)
354 PRK14727 putative mercuric red 22.5 89 0.0019 29.7 3.3 33 270-302 312-345 (479)
355 COG0029 NadB Aspartate oxidase 22.3 1.4E+02 0.0031 28.5 4.4 70 43-112 118-194 (518)
356 PRK06467 dihydrolipoamide dehy 22.2 78 0.0017 30.0 2.9 33 270-302 303-336 (471)
357 PRK06452 sdhA succinate dehydr 22.1 1.2E+02 0.0025 29.8 4.1 34 271-304 360-403 (566)
358 PRK09077 L-aspartate oxidase; 22.1 1E+02 0.0022 29.9 3.7 35 270-304 365-409 (536)
359 PRK07818 dihydrolipoamide dehy 22.0 1.1E+02 0.0025 28.8 4.0 33 270-302 302-335 (466)
360 PRK12770 putative glutamate sy 22.0 2.9E+02 0.0063 24.9 6.5 43 68-112 224-284 (352)
361 TIGR01423 trypano_reduc trypan 22.0 1.3E+02 0.0027 28.9 4.2 33 270-302 317-350 (486)
362 PRK08205 sdhA succinate dehydr 21.7 1.2E+02 0.0027 29.7 4.2 35 270-304 374-418 (583)
363 PRK06115 dihydrolipoamide dehy 21.5 1.2E+02 0.0025 28.8 3.9 34 270-303 304-338 (466)
364 PRK05249 soluble pyridine nucl 21.5 1.2E+02 0.0025 28.6 3.9 33 270-302 301-334 (461)
365 PRK07057 sdhA succinate dehydr 21.5 1E+02 0.0023 30.3 3.7 34 270-303 382-425 (591)
366 KOG2311 NAD/FAD-utilizing prot 21.3 77 0.0017 30.3 2.5 74 43-118 108-190 (679)
367 TIGR01316 gltA glutamate synth 21.1 3E+02 0.0066 25.9 6.6 45 68-112 323-385 (449)
368 PF01333 Apocytochr_F_C: Apocy 20.9 2.5E+02 0.0054 21.1 4.6 24 75-98 11-34 (118)
369 TIGR01176 fum_red_Fp fumarate 20.9 1.3E+02 0.0028 29.6 4.1 35 270-304 369-413 (580)
370 TIGR02360 pbenz_hydroxyl 4-hyd 20.7 1.5E+02 0.0032 27.3 4.3 32 271-302 278-315 (390)
371 COG4820 EutJ Ethanolamine util 20.4 1.5E+02 0.0033 24.8 3.7 45 249-293 205-249 (277)
372 TIGR01350 lipoamide_DH dihydro 20.3 1.3E+02 0.0027 28.4 3.9 34 270-303 298-332 (461)
373 PRK06292 dihydrolipoamide dehy 20.3 1.3E+02 0.0028 28.3 3.9 33 270-302 297-330 (460)
No 1
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.1e-44 Score=316.46 Aligned_cols=291 Identities=42% Similarity=0.639 Sum_probs=255.9
Q ss_pred CccccchHHHHHHhcCcHHHHHHHhHhhhccCCCCCCCCCCC-CCCCceeeeccchhhHHHHHHHHHhcc---ceeeCce
Q 021616 1 MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLP-KPKGQTVGSFRKGLTMLPEAISKRLGS---KVKLSWK 76 (310)
Q Consensus 1 ~~~~~p~~~~~e~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gG~~~L~~~L~~~l~~---~i~~~~~ 76 (310)
||++||.||+.|||||||+.|+++.++.+++.+++.++.+.+ +++.+..|.++||++.|+++|.+.|+. .|.++.+
T Consensus 192 mk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~ 271 (491)
T KOG1276|consen 192 MKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLK 271 (491)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccc
Confidence 689999999999999999999999999877776665554444 888999999999999999999999974 5789999
Q ss_pred eeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCCCCHHHHhhccCCCCCCEEEEEEEecCCcccccccc
Q 021616 77 LSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLI 156 (310)
Q Consensus 77 V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~ 156 (310)
+..+.....|.|.+++.+.+++..+..++++.|.|+..++.+++...+.+..++..++|.++.+|++.|+.+... +
T Consensus 272 ~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~---~- 347 (491)
T KOG1276|consen 272 LSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRGLQNSLSNALSEIPYVPVAVVNTYYPKEKID---L- 347 (491)
T ss_pred cccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhccccchhhhhhhhcCCCCceEEEEEeccCcccc---c-
Confidence 999988876669999987888667788888899999999999998888889999999999999999999986432 1
Q ss_pred CCCcCcceEEec--CCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCCCC--CCCCCHHHHHHHHHHHHHHHhCCCC
Q 021616 157 DGELKGFGQLHP--RSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLG--ILSKKESELVEAVDRDLRKMLINPN 232 (310)
Q Consensus 157 ~~~~~g~g~l~~--~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~~~--~~~~~~eel~~~~~~~l~~~~~~~~ 232 (310)
+++|||+|+| ..++.+.+|++|||..||.++|.+ .+++|++|.|... +...+.|++++.+.++|.+++++.
T Consensus 348 --pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~--~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~- 422 (491)
T KOG1276|consen 348 --PLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSP--KVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGIS- 422 (491)
T ss_pred --ccccceeeccCCCCCCCceeEEEeecccCCCCCCCc--eEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCC-
Confidence 6899999999 677889999999999999887755 6788888877554 346789999999999999999987
Q ss_pred CCCCcEEEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccCCCchhHHHHHHHHHHHHHH
Q 021616 233 AKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVS 301 (310)
Q Consensus 233 ~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~ 301 (310)
.+|....++-|++|+|||++||.+.++.++..+.+....+|++||+|+.|+++++||.+|+++|.+++
T Consensus 423 -~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 423 -NKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGGVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred -CCcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccCCCChhHHHHhhHHHHHhhc
Confidence 46998889999999999999999999999999887544689999999999999999999999998875
No 2
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=1.3e-41 Score=322.94 Aligned_cols=309 Identities=68% Similarity=1.113 Sum_probs=252.5
Q ss_pred ccccchHHHHHHhcCcHHHHHHHhHhhhccCCCC-CCCCCCCCCCCceeeeccchhhHHHHHHHHHhc-cceeeCceeee
Q 021616 2 KAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQ-PRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLG-SKVKLSWKLSG 79 (310)
Q Consensus 2 ~~~~p~~~~~e~~~gs~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gG~~~L~~~L~~~l~-~~i~~~~~V~~ 79 (310)
+.+||.++++|++|||++++++++...+...++. ..+..+....+..+++++|||++|+++|++.++ .+|++|++|++
T Consensus 183 ~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~ 262 (496)
T PLN02576 183 KAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLS 262 (496)
T ss_pred HHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEE
Confidence 4689999999999999999998776532211110 112222333455679999999999999999997 68999999999
Q ss_pred EEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCCCCHHHHhhccCCCCCCEEEEEEEecCCccccccccCCC
Q 021616 80 VKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGE 159 (310)
Q Consensus 80 I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~ 159 (310)
|+..+++.|.|++.+.+|++++.||+||+|+|++++..++.+..++..+.+++++|.++.+|++.|++++|....+...+
T Consensus 263 I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~ 342 (496)
T PLN02576 263 LSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGP 342 (496)
T ss_pred EEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCC
Confidence 99987744777775445544689999999999999999998777778888999999999999999998766422111113
Q ss_pred cCcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEE
Q 021616 160 LKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVL 239 (310)
Q Consensus 160 ~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~ 239 (310)
..+||+++++.++.+.++++|+|..+|++.|++..++++|+++..+..+.+++++++++.++++|.+++|......|...
T Consensus 343 ~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~ 422 (496)
T PLN02576 343 LEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVV 422 (496)
T ss_pred CCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEE
Confidence 46788888877777788999999999988888878888999988778888899999999999999999986422367888
Q ss_pred EEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccCCCchhHHHHHHHHHHHHHHHHhhhcccC
Q 021616 240 GVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK 310 (310)
Q Consensus 240 ~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~~~l~~~~~~ 310 (310)
.+++|++++|+|.+||...++.+++.+.....++|++||||+.|.++++|+.||+++|++|++.+.++.|+
T Consensus 423 ~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~~~~~~~~~~ 493 (496)
T PLN02576 423 GVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVALGKCVESGYEAADLVISYLESSAYK 493 (496)
T ss_pred EEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCccHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 89999999999999999988888887764122799999999999999999999999999999999888875
No 3
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=3e-39 Score=304.31 Aligned_cols=287 Identities=40% Similarity=0.631 Sum_probs=239.5
Q ss_pred ccccchHHHHHHhcCcHHHHHHHhHhhhccCCCCCCCCCCCCCCCceeeeccchhhHHHHHHHHHhc-cceeeCceeeeE
Q 021616 2 KAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLG-SKVKLSWKLSGV 80 (310)
Q Consensus 2 ~~~~p~~~~~e~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~L~~~l~-~~i~~~~~V~~I 80 (310)
+++||.+|..|++|||++.++.+... .+............+..++++.|||++|+++|++.++ ++|++|++|++|
T Consensus 174 ~~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I 249 (462)
T TIGR00562 174 KSTFPKFYQTEQKHGSLILGMKKTRN----LPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLKLTKVYKGTKVTKL 249 (462)
T ss_pred HHHhHHHHHHHHhcCcHHHHHHhhcc----cCccccccccccccCCceEecchhHHHHHHHHHHHhccCeEEcCCeEEEE
Confidence 57899999999999999999954310 0000000001122333478999999999999999996 689999999999
Q ss_pred EEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCCCCHHHHhhccCCCCCCEEEEEEEecCCccccccccCCCc
Q 021616 81 KKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGEL 160 (310)
Q Consensus 81 ~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~ 160 (310)
+.++++ |.|++ .+| +++.||+||+|+|++.+..++++.+++..+.+++++|.++.++++.|+++++.. +.
T Consensus 250 ~~~~~~-~~v~~--~~g-~~~~ad~VI~t~P~~~~~~ll~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~------~~ 319 (462)
T TIGR00562 250 SHRGSN-YTLEL--DNG-VTVETDSVVVTAPHKAAAGLLSELSNSASSHLDKIHSPPVANVNLGFPEGSVDG------EL 319 (462)
T ss_pred EecCCc-EEEEE--CCC-cEEEcCEEEECCCHHHHHHHhcccCHHHHHHHhcCCCCceEEEEEEEchHHcCC------CC
Confidence 998886 88875 566 478999999999999999999887777888899999999999999998765541 34
Q ss_pred CcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEE
Q 021616 161 KGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLG 240 (310)
Q Consensus 161 ~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~ 240 (310)
.+||++++..+...+++++|+|+++|++.|+|..++++++++.++..+.+++++++++.++++|.++++.. ..|.+..
T Consensus 320 ~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~--~~p~~~~ 397 (462)
T TIGR00562 320 EGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNIN--NEPEMLC 397 (462)
T ss_pred CceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCCC--CCCcEEE
Confidence 67899988776667889999999999888888888999999877777888999999999999999999865 3589999
Q ss_pred EEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccCCCchhHHHHHHHHHHHHHHHHhh
Q 021616 241 VRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 241 ~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
++||++++|+|.+||...++++++.+.. ..++|++||||+.|.++++|+.||+++|++|++.+-
T Consensus 398 v~rw~~a~P~~~~g~~~~~~~i~~~l~~-~~~~l~l~G~~~~g~~i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 398 VTRWHRAIPQYHVGHDQRLKEARELLES-AYPGVFLTGNSFEGVGIPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred EeEccccCCCCCCChHHHHHHHHHHHHh-hCCCEEEeccccCCCcHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999988877654 357999999999999999999999999999988763
No 4
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=3e-39 Score=294.83 Aligned_cols=273 Identities=28% Similarity=0.435 Sum_probs=235.7
Q ss_pred CccccchHHHHHHhcCcHHHHHHHhHhhhccCCCCCCCCCCCCCCCceeeeccchhhHHHHHHHHHhccceeeCceeeeE
Q 021616 1 MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGV 80 (310)
Q Consensus 1 ~~~~~p~~~~~e~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I 80 (310)
++++||.+.+.|++|||+++|+.+...++. +.....+++++|||++|+++|++.+..+|+++++|++|
T Consensus 171 ~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~------------~~~~~~~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i 238 (444)
T COG1232 171 AAAAFPILARAERKYGSLLRGAKKEGLPKQ------------SLKKEKFGYLRGGLQSLIEALAEKLEAKIRTGTEVTKI 238 (444)
T ss_pred HHHhcchhhhhhhhhcchhhhhhhccCccc------------ccccccccccCccHHHHHHHHHHHhhhceeecceeeEE
Confidence 357999999999999999999998754322 12234579999999999999999998889999999999
Q ss_pred EEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCCCCHHHHhhccCCCCCCEEEEEEEecCCccccccccCCCc
Q 021616 81 KKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGEL 160 (310)
Q Consensus 81 ~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~ 160 (310)
..+..+ +.+.. .+| +++.||.||+|+|++.+..++++ ......+.+++++++++|.++++++... . ..
T Consensus 239 ~~~~~~-~~~~~--~~g-~~~~~D~VI~t~p~~~l~~ll~~--~~~~~~~~~~~~~s~~~vv~~~~~~~~~--~----~~ 306 (444)
T COG1232 239 DKKGAG-KTIVD--VGG-EKITADGVISTAPLPELARLLGD--EAVSKAAKELQYTSVVTVVVGLDEKDNP--A----LP 306 (444)
T ss_pred EEcCCc-cEEEE--cCC-ceEEcceEEEcCCHHHHHHHcCC--cchhhhhhhccccceEEEEEEecccccc--C----CC
Confidence 999765 55544 466 47999999999999999999987 4456778899999999999999886322 1 24
Q ss_pred CcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEE
Q 021616 161 KGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLG 240 (310)
Q Consensus 161 ~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~ 240 (310)
++||++++++... +.+++|+|++||+..|+|++++++.+++.+......++|||+++.++++|.++++.. ..|.++.
T Consensus 307 ~~~g~~iad~~~~-~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~--~~~~~~~ 383 (444)
T COG1232 307 DGYGLLIADDDPY-ILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGIN--GDPVFVE 383 (444)
T ss_pred CceEEEEecCCCc-ceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcC--cchhhee
Confidence 6789999877644 899999999999999999999999998887777788999999999999999999877 4677999
Q ss_pred EEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccCCCchhHHHHHHHHHHHHHH
Q 021616 241 VRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVS 301 (310)
Q Consensus 241 ~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~ 301 (310)
+.||..++|+|.+||.+.+.+++..+.. .+++|.++|.|+.|+|+++||.+|+.||++|+
T Consensus 384 v~r~~~~~PqY~vG~~~~~~~ir~~l~~-~y~gi~~~G~~~~g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 384 VTRWKYAMPQYEVGHLDRLEPIRAALKG-AYPGIKSVGRYGEGVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred eeeccccCCccchhHHHHHHHHHHhhcc-ccCCeEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence 9999999999999999999999998875 35999999999999999999999999999986
No 5
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=3.2e-37 Score=290.53 Aligned_cols=277 Identities=19% Similarity=0.313 Sum_probs=229.4
Q ss_pred ccccchHHHHHHhcCcHHHHHHHhHhhhccCCCCCCCCCCCCCCCceeeeccchhhHHHHHHHHHhcc-ceeeCceeeeE
Q 021616 2 KAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGS-KVKLSWKLSGV 80 (310)
Q Consensus 2 ~~~~p~~~~~e~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~L~~~l~~-~i~~~~~V~~I 80 (310)
+++||.|+++|+++||++.++.++.... ....+..+++++|||++|+++|++.+.. +|++|++|++|
T Consensus 183 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~------------~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I 250 (463)
T PRK12416 183 ASTLPYLLDYKNKYGSIIKGFEENKKQF------------QSAGNKKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAV 250 (463)
T ss_pred HHhhHHHHHHHHhcCcHHHHHHHhhhcc------------CCCCCCceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEE
Confidence 4689999999999999999986542110 0111234789999999999999999963 79999999999
Q ss_pred EEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCCCCHHHHhhccCCCCCCEEEEEEEecCCccccccccCCCc
Q 021616 81 KKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGEL 160 (310)
Q Consensus 81 ~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~ 160 (310)
+.++++ |.|++ .+| +++.||+||+|+|++.+..|+.+ +++...++++.|.++.+++++|+++.+. + +.
T Consensus 251 ~~~~~~-~~v~~--~~g-~~~~ad~VI~a~p~~~~~~ll~~--~~l~~~~~~~~~~~~~~v~l~~~~~~~~---~---~~ 318 (463)
T PRK12416 251 SKQGDR-YEISF--ANH-ESIQADYVVLAAPHDIAETLLQS--NELNEQFHTFKNSSLISIYLGFDILDEQ---L---PA 318 (463)
T ss_pred EEcCCE-EEEEE--CCC-CEEEeCEEEECCCHHHHHhhcCC--cchhHHHhcCCCCceEEEEEEechhhcC---C---CC
Confidence 998886 87765 466 36899999999999999998864 3455667888999999999999976543 1 34
Q ss_pred CcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecC--CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcE
Q 021616 161 KGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGG--ATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLV 238 (310)
Q Consensus 161 ~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g--~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~ 238 (310)
++||+++|..++..+.++.|.|++|+...|++..++++++++ ..+..+..+++|++.+.++++|++++|.. ..|..
T Consensus 319 ~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~--~~p~~ 396 (463)
T PRK12416 319 DGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIK--GEPEV 396 (463)
T ss_pred CceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCC--CCceE
Confidence 679999998777777888999999988767666777778763 45566778899999999999999999865 47899
Q ss_pred EEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccCCCchhHHHHHHHHHHHHHHHHhh
Q 021616 239 LGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 239 ~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
..+++|.+++|+|.+||...++.+++.+.. ..++|++||+++.|.+|++||.||+++|++|++.+.
T Consensus 397 ~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~-~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 397 VEVTNWKDLMPKYHLEHNQAVQSLQEKMMN-LYPNIYLAGASYYGVGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred EEEEEccccCCCcCcCHHHHHHHHHHHHHh-hCCCeEEeccccccccHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999888877754 458999999999999999999999999999987754
No 6
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=8.5e-32 Score=252.85 Aligned_cols=271 Identities=27% Similarity=0.465 Sum_probs=219.0
Q ss_pred cccchHHHHHHhcCcHHHHHHHhHhhhccCCCCCCCCCCCCCCCceeeeccchhhHHHHHHHHHhcc-ceeeCceeeeEE
Q 021616 3 AAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGS-KVKLSWKLSGVK 81 (310)
Q Consensus 3 ~~~p~~~~~e~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~L~~~l~~-~i~~~~~V~~I~ 81 (310)
.++|.+..++..+||++.++.+.....+. ..+...++++|||++|+++|++.++. +|++|++|++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~ 246 (451)
T PRK11883 179 ATFPQLAQAEDKYGSLLRGMRKALPKEKK------------KTKGVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKID 246 (451)
T ss_pred HhHHHHHHHHHhcCcHHHHHHhhccccCC------------CCCCceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEE
Confidence 46788888998999999998865322110 11234678999999999999999976 799999999999
Q ss_pred EcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCCCCHHHHhhccCCCCCCEEEEEEEecCCccccccccCCCcC
Q 021616 82 KLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELK 161 (310)
Q Consensus 82 ~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~ 161 (310)
.++++ |.|.+ .+| +++.||+||+|+|++++..++.+ +...+++++++|.++.++++.|++++.. ...
T Consensus 247 ~~~~~-~~v~~--~~g-~~~~~d~vI~a~p~~~~~~l~~~--~~~~~~~~~~~~~~~~~v~l~~~~~~~~-------~~~ 313 (451)
T PRK11883 247 KSGDG-YEIVL--SNG-GEIEADAVIVAVPHPVLPSLFVA--PPAFALFKTIPSTSVATVALAFPESATN-------LPD 313 (451)
T ss_pred EcCCe-EEEEE--CCC-CEEEcCEEEECCCHHHHHHhccC--hhHHHHHhCCCCCceEEEEEEeccccCC-------CCC
Confidence 98886 87775 566 37899999999999999999764 3456778899999999999999986421 134
Q ss_pred cceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEE
Q 021616 162 GFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGV 241 (310)
Q Consensus 162 g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~ 241 (310)
+++++++.+++.++.++.|++..+|..+|+|..++.++++...+....+++++++++.++++|++++|.. ..|....+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~~ 391 (451)
T PRK11883 314 GTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGIT--GDPEFTIV 391 (451)
T ss_pred ceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCC--CCceEEEE
Confidence 5788887655667778889998888777878777776665433334567899999999999999999865 46788999
Q ss_pred EecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccCCCchhHHHHHHHHHHHHHHH
Q 021616 242 RVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSN 302 (310)
Q Consensus 242 ~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~~ 302 (310)
++|.+++|.|.+|+....+.+++.+.. .++||+||+|+.|.++++|+.||+++|++|++
T Consensus 392 ~rw~~a~p~~~~~~~~~~~~l~~~l~~--~~~l~~aG~~~~g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 392 QRWKEAMPQYGVGHIERVAELRAGLPH--YPGLYVAGASFEGVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred eecCccCCCCCccHHHHHHHHHHhhhh--CCCEEEECcccCCccHHHHHHHHHHHHHHHHh
Confidence 999999999999998877777776653 46999999999889999999999999999975
No 7
>PLN03000 amine oxidase
Probab=99.94 E-value=9.1e-25 Score=212.59 Aligned_cols=237 Identities=17% Similarity=0.191 Sum_probs=179.9
Q ss_pred eeeccchhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHH----hccCCCCH
Q 021616 49 VGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVAS----SLLRPLSV 124 (310)
Q Consensus 49 ~~~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~----~ll~~~~~ 124 (310)
.+.++|||++|+++|++.| .|++|++|++|++.+++ |.|++ .++ ++.||+||+|+|+.++. ...+++++
T Consensus 373 ~~~v~GG~~~LieaLa~~L--~I~Ln~~Vt~I~~~~dg-V~V~~--~~~--~~~AD~VIvTVPlgVLk~~~I~F~PpLP~ 445 (881)
T PLN03000 373 HCFLPGGNGRLVQALAENV--PILYEKTVQTIRYGSNG-VKVIA--GNQ--VYEGDMVLCTVPLGVLKNGSIKFVPELPQ 445 (881)
T ss_pred eEEeCCCHHHHHHHHHhhC--CcccCCcEEEEEECCCe-EEEEE--CCc--EEEeceEEEcCCHHHHhhCceeeCCCCCH
Confidence 4679999999999999999 59999999999999886 88875 333 79999999999999998 33466666
Q ss_pred HHHhhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCC
Q 021616 125 DAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGAT 204 (310)
Q Consensus 125 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~ 204 (310)
...++++++.|..+.+|.+.|++++|.. +...||++.+...... ....|.+.. + +.|..+|.+|++|..
T Consensus 446 ~K~~AI~rL~~G~l~KViL~Fd~~FW~~------d~~~FG~l~~~~~~rg-~~~~f~s~s-p---~~G~pVLvafv~Gd~ 514 (881)
T PLN03000 446 RKLDCIKRLGFGLLNKVAMLFPYVFWST------DLDTFGHLTEDPNYRG-EFFLFYSYA-P---VAGGPLLIALVAGEA 514 (881)
T ss_pred HHHHHHHcCCCcceEEEEEEeCCccccC------CCCceeEEecCCCCCc-eeEEEeCCC-C---CCCCcEEEEEecCch
Confidence 7788999999999999999999999963 3466888765432222 223333221 1 135568889999988
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCC--CCCCCcEEEEEecC------CCCCCCCCChHHHHHHHHHHhhhcC-CCCeE
Q 021616 205 NLGILSKKESELVEAVDRDLRKMLINP--NAKDPLVLGVRVWQ------QAIPQFLVGHLDLLDAAKSSLRDNG-YQGLF 275 (310)
Q Consensus 205 ~~~~~~~~~eel~~~~~~~l~~~~~~~--~~~~p~~~~~~rw~------~a~p~~~~g~~~~~~~~~~~~~~~~-~~~l~ 275 (310)
+..+..++++++++.++++|+++++.. ....|..+.+++|. +++..+.+|.... ..+.+.++. .++||
T Consensus 515 A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~---~~d~LaePv~~GRIf 591 (881)
T PLN03000 515 AHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGD---DYDILAESVGDGRLF 591 (881)
T ss_pred hHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchH---HHHHHhCcCCCCcEE
Confidence 888889999999999999999999732 12468888999996 4555566664331 122333311 25899
Q ss_pred EeecccCC---CchhHHHHHHHHHHHHHHHHhhh
Q 021616 276 LGGNYVAG---VALGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 276 ~aG~~~~g---~gv~~ai~sG~~aA~~i~~~l~~ 306 (310)
|||+++.. ..|+||+.||.+||++|++.+..
T Consensus 592 FAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 592 FAGEATTRRYPATMHGAFVTGLREAANMAQSAKA 625 (881)
T ss_pred EeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhh
Confidence 99998652 35999999999999999987654
No 8
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.94 E-value=1.5e-24 Score=211.21 Aligned_cols=272 Identities=17% Similarity=0.207 Sum_probs=192.1
Q ss_pred chHHHHHHhcCcHHHHHHHhHhhhccCCCCCCCCCCCCCCCceeeeccchhhHHHHHHHHHhccceeeCceeeeEEEcCC
Q 021616 6 GKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDS 85 (310)
Q Consensus 6 p~~~~~e~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~ 85 (310)
+.+.++|..+|+.+..+-... +.+ . +. ...+...+.++|||++|+++|++.+ .|++|++|++|.+.++
T Consensus 396 w~lanlE~~~gs~ls~LSl~~---w~q-d---~~---~e~~G~~~~v~GG~~~Li~aLa~~L--~I~ln~~V~~I~~~~d 463 (808)
T PLN02328 396 WHLANLEYANASLMSNLSMAY---WDQ-D---DP---YEMGGDHCFIPGGNDTFVRELAKDL--PIFYERTVESIRYGVD 463 (808)
T ss_pred HHHHHHhccchhhHHHHHhhh---hhc-c---cc---ccCCCeEEEECCcHHHHHHHHHhhC--CcccCCeeEEEEEcCC
Confidence 355667777887766663211 110 0 00 0011225789999999999999999 5999999999999988
Q ss_pred CcEEEEEECCCCeEEEecCEEEEcCCchHHHh----ccCCCCHHHHhhccCCCCCCEEEEEEEecCCccccccccCCCcC
Q 021616 86 GEYSLTYETPEGLVSLRSRSVVMTVPSYVASS----LLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELK 161 (310)
Q Consensus 86 ~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~----ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~ 161 (310)
+ |.|+ .+| +++.||+||+|+|+.++.+ +.+++++...++++++.|.++.+|.+.|++++|.. ...
T Consensus 464 g-V~V~---~~G-~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~------~~d 532 (808)
T PLN02328 464 G-VIVY---AGG-QEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGG------EID 532 (808)
T ss_pred e-EEEE---eCC-eEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccC------CCC
Confidence 6 7764 356 4799999999999999984 23556666788999999999999999999999863 245
Q ss_pred cceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCC--CCCCCcEE
Q 021616 162 GFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINP--NAKDPLVL 239 (310)
Q Consensus 162 g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~eel~~~~~~~l~~~~~~~--~~~~p~~~ 239 (310)
.||++.+........ ..|.+ +.. +.|..+|.+|++|.++..+..++++++++.+++.|.++++.. ....|...
T Consensus 533 ~fG~l~~d~s~rG~~-~lf~s--~s~--~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~ 607 (808)
T PLN02328 533 TFGHLTEDPSMRGEF-FLFYS--YSS--VSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQA 607 (808)
T ss_pred ceEEEeecCCCCceE-EEEec--CCC--CCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceE
Confidence 678776432222211 22322 211 234468889999988888888999999999999999999742 12468889
Q ss_pred EEEecCC------CCCCCCCChHHHHHHHHHHhhhcC-CCCeEEeecccCC---CchhHHHHHHHHHHHHHHHHhhhcc
Q 021616 240 GVRVWQQ------AIPQFLVGHLDLLDAAKSSLRDNG-YQGLFLGGNYVAG---VALGRCVESAYEVASEVSNFLSQYA 308 (310)
Q Consensus 240 ~~~rw~~------a~p~~~~g~~~~~~~~~~~~~~~~-~~~l~~aG~~~~g---~gv~~ai~sG~~aA~~i~~~l~~~~ 308 (310)
.+++|.. ++..+.+|.... ..+.+..+. .++|||||+++.. ..|+||+.||.++|++|++.+...+
T Consensus 608 ~vtrW~~DP~s~GSYS~~~pG~~~~---~~~~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~ 683 (808)
T PLN02328 608 VCTRWGKDCFTYGSYSYVAVGSSGD---DYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRRS 683 (808)
T ss_pred EEecCCCCCCcCCCCCCCCCCCchh---HHHHHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999973 344445664321 112233311 2589999999763 3599999999999999998876553
No 9
>PLN02529 lysine-specific histone demethylase 1
Probab=99.92 E-value=1.8e-23 Score=202.70 Aligned_cols=237 Identities=17% Similarity=0.180 Sum_probs=173.7
Q ss_pred eeeccchhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhc---c-CCCCH
Q 021616 49 VGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSL---L-RPLSV 124 (310)
Q Consensus 49 ~~~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~l---l-~~~~~ 124 (310)
.+.+.|||++|+++|++.+ .|++|++|++|++++++ |.|+. ++ .++.||+||+|+|+.++.+. + |++++
T Consensus 349 ~~~i~GG~~~Li~aLA~~L--~IrLnt~V~~I~~~~dG-VtV~t---~~-~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~ 421 (738)
T PLN02529 349 HCFLAGGNWRLINALCEGV--PIFYGKTVDTIKYGNDG-VEVIA---GS-QVFQADMVLCTVPLGVLKKRTIRFEPELPR 421 (738)
T ss_pred eEEECCcHHHHHHHHHhcC--CEEcCCceeEEEEcCCe-EEEEE---CC-EEEEcCEEEECCCHHHHHhccccCCCCCCH
Confidence 4779999999999999988 69999999999999886 88764 33 47999999999999999843 3 44555
Q ss_pred HHHhhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCC
Q 021616 125 DAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGAT 204 (310)
Q Consensus 125 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~ 204 (310)
...++++++.|.++.+|++.|++++|.. ....||++.+........ .+|.+.. . +.+..+|.++++|..
T Consensus 422 ~K~~AI~rL~yG~v~KV~L~F~~~FW~~------~~~~fG~l~~~~~~~g~~-~~~~~~~---~-~~ggpvLvafv~G~~ 490 (738)
T PLN02529 422 RKLAAIDRLGFGLLNKVAMVFPSVFWGE------ELDTFGCLNESSNKRGEF-FLFYGYH---T-VSGGPALVALVAGEA 490 (738)
T ss_pred HHHHHHHcCCCceeEEEEEEeCCccccC------CCCceEEEeccCCCCceE-EEEecCC---C-CCCCCEEEEEECchh
Confidence 6778899999999999999999998863 234577765433332222 2232211 1 123346778998887
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCC--CCCCCcEEEEEecCC------CCCCCCCChHHHHHHHHHHhhhcCCCCeEE
Q 021616 205 NLGILSKKESELVEAVDRDLRKMLINP--NAKDPLVLGVRVWQQ------AIPQFLVGHLDLLDAAKSSLRDNGYQGLFL 276 (310)
Q Consensus 205 ~~~~~~~~~eel~~~~~~~l~~~~~~~--~~~~p~~~~~~rw~~------a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~ 276 (310)
+..+..++++++++.+++.|+++++.. ....|..+.+++|.. ++..+.+|.... .+ ..+..+..++|||
T Consensus 491 A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~--d~-~~La~pv~grL~F 567 (738)
T PLN02529 491 AQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGS--DY-DILAESVSGRLFF 567 (738)
T ss_pred hHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchh--HH-HHHhCCCCCCEEE
Confidence 777888999999999999999999742 124678888999974 233333332211 11 2333322478999
Q ss_pred eecccCC---CchhHHHHHHHHHHHHHHHHhhh
Q 021616 277 GGNYVAG---VALGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 277 aG~~~~g---~gv~~ai~sG~~aA~~i~~~l~~ 306 (310)
||+++.. ..|+||+.||.+||++|++.+.+
T Consensus 568 AGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 568 AGEATTRQYPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred EEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 9999753 35999999999999999987754
No 10
>PRK07233 hypothetical protein; Provisional
Probab=99.92 E-value=1.5e-23 Score=195.91 Aligned_cols=236 Identities=19% Similarity=0.259 Sum_probs=176.5
Q ss_pred eeeeccchhhHHHHHHHHHhc---cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCCCCH
Q 021616 48 TVGSFRKGLTMLPEAISKRLG---SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSV 124 (310)
Q Consensus 48 ~~~~~~gG~~~L~~~L~~~l~---~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~ 124 (310)
.+++++||++.|+++|++.+. ++|++|++|++|+.++++ +.+.. .+| ++++||+||+|+|++.+..++++.++
T Consensus 189 ~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~-~~~~~--~~~-~~~~ad~vI~a~p~~~~~~ll~~~~~ 264 (434)
T PRK07233 189 KLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGG-VTGVE--VDG-EEEDFDAVISTAPPPILARLVPDLPA 264 (434)
T ss_pred eEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCc-eEEEE--eCC-ceEECCEEEECCCHHHHHhhcCCCcH
Confidence 367899999999999999874 589999999999988775 65443 344 37899999999999999999876666
Q ss_pred HHHhhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEE--EEEecC
Q 021616 125 DAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLL--LNYIGG 202 (310)
Q Consensus 125 ~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l--~~~~~g 202 (310)
...+.++++.|.++.++++.++++.. +.+....+ ....++.++++.+...|...|+|+.++ .+++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~ 333 (434)
T PRK07233 265 DVLARLRRIDYQGVVCMVLKLRRPLT----------DYYWLNIN-DPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPG 333 (434)
T ss_pred HHHhhhcccCccceEEEEEEecCCCC----------CCceeeec-CCCCCcceEEEecccCCccccCCceEEEEeeecCC
Confidence 66677888999999999999987532 12322222 222345566666665565555555543 445544
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccC
Q 021616 203 ATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVA 282 (310)
Q Consensus 203 ~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~ 282 (310)
.. .++.++++++++.++++|.++++......+....+.+|+.++|.|.+|+...... +.. +.+|||||||+..
T Consensus 334 ~~--~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~----~~~-~~~~l~~aG~~~~ 406 (434)
T PRK07233 334 DH--PLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPP----YDT-PIEGLYLAGMSQI 406 (434)
T ss_pred CC--hhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCC----ccc-CcCCEEEeCCccc
Confidence 32 3557889999999999999999854334577888999999999999997654322 333 4589999999632
Q ss_pred ---CCchhHHHHHHHHHHHHHHHHhh
Q 021616 283 ---GVALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 283 ---g~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
+.++++|+.||++||++|++.+.
T Consensus 407 ~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 407 YPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred CCccCchhHHHHHHHHHHHHHhhhhc
Confidence 45799999999999999988764
No 11
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.92 E-value=9.2e-26 Score=188.34 Aligned_cols=227 Identities=19% Similarity=0.262 Sum_probs=178.2
Q ss_pred eeccchhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCC----CCHH
Q 021616 50 GSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRP----LSVD 125 (310)
Q Consensus 50 ~~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~----~~~~ 125 (310)
|..+.||++|++.|+..| +|+++++|+.|.+.+++ |++++ ++|.+...||.||+|+|++++..||.+ .+.+
T Consensus 101 yvg~pgmsalak~LAtdL--~V~~~~rVt~v~~~~~~-W~l~~--~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~ 175 (331)
T COG3380 101 YVGEPGMSALAKFLATDL--TVVLETRVTEVARTDND-WTLHT--DDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAA 175 (331)
T ss_pred cccCcchHHHHHHHhccc--hhhhhhhhhhheecCCe-eEEEe--cCCCcccccceEEEecCCCcchhhcCcccccchHH
Confidence 888999999999999999 99999999999999875 99997 445457899999999999999999843 3445
Q ss_pred HHhhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCC
Q 021616 126 AAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 205 (310)
Q Consensus 126 ~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~ 205 (310)
+...+..+.|.||+.+.|+|+++... |.+| .++. ...++++--+...+++.|.+. .+.+-++..|+
T Consensus 176 l~~~~a~V~y~Pc~s~~lg~~q~l~~-------P~~G--~~vd----g~~laWla~d~sK~g~~p~~~-~~vvqasp~wS 241 (331)
T COG3380 176 LRAALADVVYAPCWSAVLGYPQPLDR-------PWPG--NFVD----GHPLAWLARDASKKGHVPDGE-IWVVQASPDWS 241 (331)
T ss_pred HHHhhccceehhHHHHHhcCCccCCC-------CCCC--cccC----CCeeeeeeccccCCCCCCcCc-eEEEEeCchHH
Confidence 78889999999999999999976422 3333 2232 123444443434577788776 56677788888
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccCCCc
Q 021616 206 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVA 285 (310)
Q Consensus 206 ~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~g~g 285 (310)
..+.+.++|+.+..+......+.+.- ...|.+...++|++++|+-..+.. .+-.....+||+||||++|.-
T Consensus 242 r~h~~~~~e~~i~~l~aA~~~~~~~~-~~~p~~s~~H~WrYA~P~~~~~~~--------~L~ad~~~~l~~cGDwc~Ggr 312 (331)
T COG3380 242 REHLDHPAEQVIVALRAAAQELDGDR-LPEPDWSDAHRWRYAIPNDAVAGP--------PLDADRELPLYACGDWCAGGR 312 (331)
T ss_pred HHhhcCCHHHHHHHHHHhhhhccCCC-CCcchHHHhhccccccccccccCC--------ccccCCCCceeeecccccCcc
Confidence 88889999999988887777777644 367899999999999998655432 222113368999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 021616 286 LGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 286 v~~ai~sG~~aA~~i~~~l 304 (310)
+|+|+.||..+|++|++.|
T Consensus 313 VEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 313 VEGAVLSGLAAADHILNGL 331 (331)
T ss_pred hhHHHhccHHHHHHHHhcC
Confidence 9999999999999998754
No 12
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.92 E-value=2.7e-24 Score=199.71 Aligned_cols=238 Identities=24% Similarity=0.417 Sum_probs=173.1
Q ss_pred eeeccchhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHh--ccCCCCHHH
Q 021616 49 VGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS--LLRPLSVDA 126 (310)
Q Consensus 49 ~~~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~--ll~~~~~~~ 126 (310)
.....|++..+...+.+.++.+|++|++|++|+..+++ +.|++ .+|+ ++.||+||+|+|+..+.+ +.++.+...
T Consensus 204 ~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~-v~v~~--~~g~-~~~ad~VI~a~p~~~l~~i~~~p~l~~~~ 279 (450)
T PF01593_consen 204 LTVGMGGLSLALALAAEELGGEIRLNTPVTRIEREDGG-VTVTT--EDGE-TIEADAVISAVPPSVLKNILLLPPLPEDK 279 (450)
T ss_dssp EEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEEESSE-EEEEE--TTSS-EEEESEEEE-S-HHHHHTSEEESTSHHHH
T ss_pred eeecccchhHHHHHHHhhcCceeecCCcceeccccccc-ccccc--ccce-EEecceeeecCchhhhhhhhhcccccccc
Confidence 34455667777777777777899999999999999985 88876 6773 899999999999999995 445554446
Q ss_pred HhhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCCC
Q 021616 127 AGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNL 206 (310)
Q Consensus 127 ~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~~ 206 (310)
.++++.+.|.++.+|++.|++++|.. ....++++.+.. .....++++++..+.+ + +...+..++.+..+.
T Consensus 280 ~~a~~~~~~~~~~~v~l~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~ 349 (450)
T PF01593_consen 280 RRAIENLPYSSVSKVFLGFDRPFWPP------DIDFFGILYSDG--FSPIGYVSDPSKFPGR-P-GGGVLTSYVGGPDAP 349 (450)
T ss_dssp HHHHHTEEEEEEEEEEEEESSGGGGS------TTTESEEEEESS--TSSEEEEEEECCTTSC-T-TSEEEEEEEEHHHHH
T ss_pred cccccccccCcceeEEEeeecccccc------cccccceecccC--ccccccccccccCccc-c-cCCcceeeeeccccc
Confidence 77889999999999999999988752 113567766554 3344566666655544 3 345666666655445
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCC-CCCCCCCChHHHHHH--HHHHhhhcCC-CCeEEeecccC
Q 021616 207 GILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQ-AIPQFLVGHLDLLDA--AKSSLRDNGY-QGLFLGGNYVA 282 (310)
Q Consensus 207 ~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~-a~p~~~~g~~~~~~~--~~~~~~~~~~-~~l~~aG~~~~ 282 (310)
.+..++++++.+.++++|+++++......|..+.+++|.. .++.+..++...... ..+.+.. +. +||||||+|+.
T Consensus 350 ~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~aG~~~~ 428 (450)
T PF01593_consen 350 EWDDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRT-PIDPGLYFAGDWTS 428 (450)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHS-CBTTTEEE-SGGGS
T ss_pred hhcccchhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccC-CcceEEEEeecccC
Confidence 5678899999999999999999852224566778889986 666554444333222 4555655 44 69999999987
Q ss_pred CC---chhHHHHHHHHHHHHHH
Q 021616 283 GV---ALGRCVESAYEVASEVS 301 (310)
Q Consensus 283 g~---gv~~ai~sG~~aA~~i~ 301 (310)
+. ++++|+.||++||++|+
T Consensus 429 ~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 429 PGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp SSSTTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHhC
Confidence 44 79999999999999986
No 13
>PRK07208 hypothetical protein; Provisional
Probab=99.92 E-value=1.8e-22 Score=191.08 Aligned_cols=244 Identities=15% Similarity=0.068 Sum_probs=173.6
Q ss_pred eeeeccchhhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcE-EEEEECCCCe-EEEecCEEEEcCCchHHHhccC-C
Q 021616 48 TVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEY-SLTYETPEGL-VSLRSRSVVMTVPSYVASSLLR-P 121 (310)
Q Consensus 48 ~~~~~~gG~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~-~v~~~~~~g~-~~~~ad~VI~a~p~~~~~~ll~-~ 121 (310)
.+.+++|||++|+++|++.+ +.+|++|++|++|..++++.+ .++....+|. ..+.||+||+|+|++.+..++. +
T Consensus 209 ~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~ 288 (479)
T PRK07208 209 EFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPP 288 (479)
T ss_pred EEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCC
Confidence 45678999999999999887 458999999999999887522 2333233453 3588999999999999998886 3
Q ss_pred CCHHHHhhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcE-EEEEEe
Q 021616 122 LSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRV-LLLNYI 200 (310)
Q Consensus 122 ~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~-~l~~~~ 200 (310)
.+++..+.++.++|.++.++++.|+++... + . .+++++... ..+..+...++..|...|+|.. .+.+-+
T Consensus 289 ~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~----~----~-~~~~~~~~~-~~~~r~~~~~~~~~~~~p~g~~~~l~~~~ 358 (479)
T PRK07208 289 PPPEVRAAAAGLRYRDFITVGLLVKELNLF----P----D-NWIYIHDPD-VKVGRLQNFNNWSPYLVPDGRDTWLGLEY 358 (479)
T ss_pred CCHHHHHHHhCCCcceeEEEEEEecCCCCC----C----C-ceEEecCCC-CccceecccccCCcccCCCCCceEEEEEE
Confidence 445667778899999999999999986421 1 1 122232211 1111122122222455677653 332212
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecc
Q 021616 201 GGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNY 280 (310)
Q Consensus 201 ~g~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~ 280 (310)
.......++.++|+++++.++++|.++ +......|.+..+.||++++|+|.+||..++..+++.+. ..+||+++|++
T Consensus 359 ~~~~~~~~~~~~deel~~~~~~~L~~l-~~~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~--~~~~l~laGr~ 435 (479)
T PRK07208 359 FCFEGDDLWNMSDEDLIALAIQELARL-GLIRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLD--HFPNLHLVGRN 435 (479)
T ss_pred EccCCCccccCCHHHHHHHHHHHHHHc-CCCChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHH--hcCCceeeccc
Confidence 112234466889999999999999997 433245688899999999999999999999888876444 35899999986
Q ss_pred c--CCCchhHHHHHHHHHHHHHHHHh
Q 021616 281 V--AGVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 281 ~--~g~gv~~ai~sG~~aA~~i~~~l 304 (310)
. ...++++|+.||.++|+.|+...
T Consensus 436 ~~~~~~~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 436 GMHRYNNQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred cccccCChhHHHHHHHHHHHHHhcCC
Confidence 3 23579999999999999987653
No 14
>PLN02268 probable polyamine oxidase
Probab=99.91 E-value=5.3e-23 Score=192.47 Aligned_cols=228 Identities=18% Similarity=0.253 Sum_probs=171.4
Q ss_pred eeccchhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhc---c-CCCCHH
Q 021616 50 GSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSL---L-RPLSVD 125 (310)
Q Consensus 50 ~~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~l---l-~~~~~~ 125 (310)
..+.+||++|+++|++.+ +|++|++|++|...+++ |.|++ .+| +++.||+||+|+|+.++... + ++.++.
T Consensus 194 ~~~~~G~~~l~~~l~~~~--~i~~~~~V~~i~~~~~~-v~v~~--~~g-~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~ 267 (435)
T PLN02268 194 GLMVRGYDPVINTLAKGL--DIRLNHRVTKIVRRYNG-VKVTV--EDG-TTFVADAAIIAVPLGVLKANIIKFEPELPEW 267 (435)
T ss_pred eeecCCHHHHHHHHhccC--ceeCCCeeEEEEEcCCc-EEEEE--CCC-cEEEcCEEEEecCHHHHhcCcceecCCCCHH
Confidence 357789999999999877 79999999999999886 88876 566 47899999999999999753 2 344555
Q ss_pred HHhhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCC
Q 021616 126 AAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 205 (310)
Q Consensus 126 ~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~ 205 (310)
..++++++.|.++.++.+.|++++|+. ...+|++.+.... +.+.++.. + +.|..++.++++|..+
T Consensus 268 ~~~ai~~~~~g~~~Kv~l~f~~~fw~~-------~~~~g~~~~~~~~-----~~~~~~~~--~-~~g~~~l~~~~~g~~a 332 (435)
T PLN02268 268 KEEAISDLGVGIENKIALHFDSVFWPN-------VEFLGVVAPTSYG-----CSYFLNLH--K-ATGHPVLVYMPAGRLA 332 (435)
T ss_pred HHHHHHhCCccceeEEEEEeCCCCCCC-------CceeeccCCCCCC-----ceEEEecc--c-CCCCCEEEEEeccHHH
Confidence 678888999999999999999998852 2335655543211 12222211 1 1345577889988877
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecC------CCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeec
Q 021616 206 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQ------QAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGN 279 (310)
Q Consensus 206 ~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~------~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~ 279 (310)
..+..++++++++.++++|.+++|.. ..|..+.+++|. +++..+.||.... ..+.+.+ +..+|||||+
T Consensus 333 ~~~~~~~~~e~~~~v~~~L~~~~~~~--~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~---~~~~l~~-p~~~l~FAGe 406 (435)
T PLN02268 333 RDIEKLSDEAAANFAMSQLKKMLPDA--TEPVQYLVSRWGSDPNSLGCYSYDLVGKPHD---LYERLRA-PVDNLFFAGE 406 (435)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHcCCC--CCccEEEecccCCCCCCCccCCCCCCCCCHH---HHHHHhC-CCCCeEEeec
Confidence 77888999999999999999999754 468889999997 3344456664322 1233444 5678999999
Q ss_pred ccCC---CchhHHHHHHHHHHHHHHHHh
Q 021616 280 YVAG---VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 280 ~~~g---~gv~~ai~sG~~aA~~i~~~l 304 (310)
++.. ..|++|+.||++||++|++.|
T Consensus 407 ~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 407 ATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred cCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 9752 349999999999999998765
No 15
>PLN02976 amine oxidase
Probab=99.91 E-value=5.5e-23 Score=205.56 Aligned_cols=236 Identities=17% Similarity=0.248 Sum_probs=170.6
Q ss_pred eeeccchhhHHHHHHHHHhccceeeCceeeeEEEc----------CCCcEEEEEECCCCeEEEecCEEEEcCCchHHHh-
Q 021616 49 VGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKL----------DSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS- 117 (310)
Q Consensus 49 ~~~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~----------~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~- 117 (310)
.+.++|||++|+++|++.+ .|++|++|++|.+. +++ |.|++ .+| +++.||+||+|+|+.+|..
T Consensus 928 ~~rIkGGYqqLIeALAe~L--~IrLNtpVtrId~s~~d~~~~~s~~dG-VtVtT--sDG-etftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976 928 HCMIKGGYSNVVESLAEGL--DIHLNHVVTDVSYGSKDAGASGSSRKK-VKVST--SNG-SEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred eEEeCCCHHHHHHHHHhhC--CeecCCeEEEEEecCCcccccccCCCc-EEEEE--CCC-CEEEeceEEEeCCHHHhhhc
Confidence 5789999999999999998 69999999999985 243 77765 677 4799999999999999973
Q ss_pred -c-c-CCCCHHHHhhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcE
Q 021616 118 -L-L-RPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRV 194 (310)
Q Consensus 118 -l-l-~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~ 194 (310)
+ | |++++...++++.+.|..+.+++|.|++++|+. ...+||...... ...+.+|. .|+...+.+..
T Consensus 1002 ~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~------d~d~FG~s~edt---dlrG~~~~--~wnlr~psG~p 1070 (1713)
T PLN02976 1002 TIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDD------SVDYFGATAEET---DLRGQCFM--FWNVKKTVGAP 1070 (1713)
T ss_pred ccccCCcccHHHHHHHHhhccccceEEEEEeCCccccC------CCCccccccccC---CCCceEEE--eccCCCCCCCC
Confidence 2 4 444444567789999999999999999999863 234566433211 11222222 12222233444
Q ss_pred EEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecC------CCCCCCCCChHHHHHHHHHHhhh
Q 021616 195 LLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQ------QAIPQFLVGHLDLLDAAKSSLRD 268 (310)
Q Consensus 195 ~l~~~~~g~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~------~a~p~~~~g~~~~~~~~~~~~~~ 268 (310)
+|.+|+.|..+..+..++++++++.+++.|.++||......|..+.+++|. +++..+.||.... ....+..
T Consensus 1071 VLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~---d~d~LAe 1147 (1713)
T PLN02976 1071 VLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGE---DYDILGR 1147 (1713)
T ss_pred EEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCch---HHHHHhC
Confidence 666777776666677889999999999999999995433578899999996 3343445664332 1233444
Q ss_pred cCCC-CeEEeecccC---CCchhHHHHHHHHHHHHHHHHhh
Q 021616 269 NGYQ-GLFLGGNYVA---GVALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 269 ~~~~-~l~~aG~~~~---g~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
+.. +|||||+.+. ...|+||+.||.++|++|+..+.
T Consensus 1148 -PVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976 1148 -PVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILN 1187 (1713)
T ss_pred -CCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 344 5999999854 23499999999999999998874
No 16
>PLN02568 polyamine oxidase
Probab=99.91 E-value=8.2e-23 Score=194.13 Aligned_cols=285 Identities=17% Similarity=0.173 Sum_probs=188.7
Q ss_pred ccccchHHHHHHhcCcHHH-HHHHhHhhhccCCCCCCCCCCCCCCCceeeeccchhhHHHHHHHHHhc-cceeeCceeee
Q 021616 2 KAAFGKVWKLEQTGGSIIG-GTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLG-SKVKLSWKLSG 79 (310)
Q Consensus 2 ~~~~p~~~~~e~~~gs~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~L~~~l~-~~i~~~~~V~~ 79 (310)
+++||.+..+|+.++|+.. +.+.... . .... ...+. .++++||+++|+++|++.+. .+|++|++|++
T Consensus 197 ~~~~~~~~~~e~~~~~~~~ls~ls~~~--~-~~~~-------~~~g~-~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~ 265 (539)
T PLN02568 197 EAIFTMHENTQRTYTSADDLSTLDLAA--E-SEYR-------MFPGE-EITIAKGYLSVIEALASVLPPGTIQLGRKVTR 265 (539)
T ss_pred HHHHHHHHHhhccccccccHhhccccc--c-Ccce-------ecCCC-eEEECCcHHHHHHHHHhhCCCCEEEeCCeEEE
Confidence 3678888888988888776 5543211 0 0000 01122 57899999999999999995 46999999999
Q ss_pred EEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHh-------cc-CCCCHHHHhhccCCCCCCEEEEEEEecCCccc
Q 021616 80 VKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS-------LL-RPLSVDAAGALSQFYYPPVAAVSVSYPKEAIR 151 (310)
Q Consensus 80 I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~-------ll-~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~ 151 (310)
|++.+++ +.|++ .+| +++.||+||+|+|+.++.. .+ +++++...++++++.|..+.++++.|++++|.
T Consensus 266 I~~~~~~-v~V~~--~dG-~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~ 341 (539)
T PLN02568 266 IEWQDEP-VKLHF--ADG-STMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDG 341 (539)
T ss_pred EEEeCCe-EEEEE--cCC-CEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCC
Confidence 9999886 88886 566 4789999999999999985 24 44555567889999999999999999999774
Q ss_pred cc-cccCCCcCcceEEecCCCC--CceeEEEeccC---CCCCCCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHH
Q 021616 152 TE-CLIDGELKGFGQLHPRSQG--VETLGTIYSSS---LFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLR 225 (310)
Q Consensus 152 ~~-~~~~~~~~g~g~l~~~~~~--~~~~~~~~~s~---~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~eel~~~~~~~l~ 225 (310)
.. .+. ....+.++...... .......|... .++. ..+..+|.+|++|..+..+..++++++++.+++.|.
T Consensus 342 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~ 417 (539)
T PLN02568 342 SPEDVA--KFPFLQMAFHRSDSEARHDKIPWWMRRTASICPI--HKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLS 417 (539)
T ss_pred cccccc--cccceeeeecccchhhhcccccchhhcccccccc--CCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHH
Confidence 20 000 01122333221110 00000011110 1111 113446778888877777788999999999999999
Q ss_pred HHhCCCCC---------------------CCCcEEEEEecC------CCCCCCCCChHHH-HHHHHHHhhh--------c
Q 021616 226 KMLINPNA---------------------KDPLVLGVRVWQ------QAIPQFLVGHLDL-LDAAKSSLRD--------N 269 (310)
Q Consensus 226 ~~~~~~~~---------------------~~p~~~~~~rw~------~a~p~~~~g~~~~-~~~~~~~~~~--------~ 269 (310)
+++|.... ..|..+.+++|. +++....+|.... ...+.+++.. .
T Consensus 418 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~ 497 (539)
T PLN02568 418 SFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGG 497 (539)
T ss_pred HHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChhHHHHHhCccccccccccccC
Confidence 99984311 357788889996 3444444665432 2233332210 0
Q ss_pred CCCCeEEeecccCC---CchhHHHHHHHHHHHHHHHHhh
Q 021616 270 GYQGLFLGGNYVAG---VALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 270 ~~~~l~~aG~~~~g---~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
+..+|||||+.++. ..|+||+.||.++|++|++...
T Consensus 498 ~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 498 PPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred CCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 12379999998752 3499999999999999998653
No 17
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.91 E-value=6.2e-23 Score=190.77 Aligned_cols=226 Identities=21% Similarity=0.240 Sum_probs=165.5
Q ss_pred ceeeeccchhhHHHHH-HHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCCC
Q 021616 47 QTVGSFRKGLTMLPEA-ISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPL 122 (310)
Q Consensus 47 ~~~~~~~gG~~~L~~~-L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~ 122 (310)
..+++++|||++++.. |++.+ +.+|++|++|++|+.++++ +.+.+. .+| +++.||+||+|+|++++..+++.
T Consensus 186 ~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~~~~-~~g-~~~~~d~vi~a~p~~~~~~ll~~- 261 (419)
T TIGR03467 186 SDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGG-IRALVL-SGG-ETLPADAVVLAVPPRHAASLLPG- 261 (419)
T ss_pred ceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCc-ceEEEe-cCC-ccccCCEEEEcCCHHHHHHhCCC-
Confidence 3478889999887654 88776 4689999999999999886 666553 355 47899999999999999999875
Q ss_pred CHHHHhhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecC
Q 021616 123 SVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGG 202 (310)
Q Consensus 123 ~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g 202 (310)
+...+.+++++|.++.++++.|+++.|. +.+.++++.+ ...++++... ..+. ..++.+++++
T Consensus 262 -~~~~~~l~~~~~~~~~~v~l~~~~~~~~-------~~~~~~~~~~------~~~~~~~~~~---~~~~-~~~~~~~~~~ 323 (419)
T TIGR03467 262 -EDLGALLTALGYSPITTVHLRLDRAVRL-------PAPMVGLVGG------LAQWLFDRGQ---LAGE-PGYLAVVISA 323 (419)
T ss_pred -chHHHHHhhcCCcceEEEEEEeCCCcCC-------CCCeeeecCC------ceeEEEECCc---CCCC-CCEEEEEEec
Confidence 2456678899999999999999998653 1223343211 1233443221 1121 2355566654
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccC
Q 021616 203 ATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVA 282 (310)
Q Consensus 203 ~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~ 282 (310)
+..+..++++++++.++++|.+++|......|.+.++.+|..+.+.+.+|+.. +++.+.+ +.++|+||||++.
T Consensus 324 --~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~-~~~~l~~aGd~~~ 396 (419)
T TIGR03467 324 --ARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNR----LRPGART-PWPNLFLAGDWTA 396 (419)
T ss_pred --chhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccc----cCCCCCC-CcCCEEEeccccc
Confidence 34567889999999999999999986533457788899998888888888642 2233333 4689999999987
Q ss_pred CC---chhHHHHHHHHHHHHHH
Q 021616 283 GV---ALGRCVESAYEVASEVS 301 (310)
Q Consensus 283 g~---gv~~ai~sG~~aA~~i~ 301 (310)
+. .+++|+.||.+||++|+
T Consensus 397 ~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 397 TGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred CCCcchHHHHHHHHHHHHHHHh
Confidence 42 58999999999999986
No 18
>PLN02676 polyamine oxidase
Probab=99.90 E-value=1.8e-22 Score=190.29 Aligned_cols=236 Identities=15% Similarity=0.175 Sum_probs=169.7
Q ss_pred cchhhHHHHHHHHHh---------ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHh--c-c-
Q 021616 53 RKGLTMLPEAISKRL---------GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS--L-L- 119 (310)
Q Consensus 53 ~gG~~~L~~~L~~~l---------~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~--l-l- 119 (310)
++|+++|++.|++.+ +.+|++|++|++|+.++++ +.|++ .+| +++.||+||+|+|+.++.. + +
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~g-V~V~~--~~G-~~~~a~~VIvtvPl~vLk~~~I~F~ 295 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNG-VTVKT--EDG-SVYRAKYVIVSVSLGVLQSDLIKFK 295 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCc-EEEEE--CCC-CEEEeCEEEEccChHHhccCceEEe
Confidence 689999999999976 2479999999999999886 88876 567 4799999999999999975 3 3
Q ss_pred CCCCHHHHhhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEE
Q 021616 120 RPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNY 199 (310)
Q Consensus 120 ~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~ 199 (310)
|++++...++++++.+..+.++.+.|++++|++. .....++.... +... ..+|.+ +....| +..++.++
T Consensus 296 P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~------~~~~~~~~~~~-~~~~-~~~~~~--~~~~~~-~~~~l~~~ 364 (487)
T PLN02676 296 PPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSG------PGTEFFLYAHE-RRGY-YPFWQH--LENEYP-GSNVLFVT 364 (487)
T ss_pred CCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCC------CCceeeeeecc-cccc-chhhhh--cccCCC-CCCEEEEE
Confidence 4455556678899999999999999999999631 11112222211 1110 011211 111112 33456677
Q ss_pred ecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecC------CCCCCCCCChHHHHHHHHHHhhhcCCCC
Q 021616 200 IGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQ------QAIPQFLVGHLDLLDAAKSSLRDNGYQG 273 (310)
Q Consensus 200 ~~g~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~------~a~p~~~~g~~~~~~~~~~~~~~~~~~~ 273 (310)
+.+..+..+..+++++..+.+++.|++++|.. ...|..+..++|. +++..+.||+.... .+.+.. +..+
T Consensus 365 ~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~-~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~---~~~L~~-P~gr 439 (487)
T PLN02676 365 VTDEESRRIEQQPDSETKAEIMEVLRKMFGPN-IPEATDILVPRWWSNRFFKGSYSNWPIGVSRYE---FDQIRA-PVGR 439 (487)
T ss_pred echHHHHHHHhCCHHHHHHHHHHHHHHHhCCC-CCCcceEEecccCCCCCCCcccCCCCCCCChhH---HHHHhC-CCCc
Confidence 76655555667899999999999999999854 3568888888995 45556677764432 234444 5689
Q ss_pred eEEeecccCC---CchhHHHHHHHHHHHHHHHHhhhcc
Q 021616 274 LFLGGNYVAG---VALGRCVESAYEVASEVSNFLSQYA 308 (310)
Q Consensus 274 l~~aG~~~~g---~gv~~ai~sG~~aA~~i~~~l~~~~ 308 (310)
|||||+.+.. ..|+||+.||++||++|++.+.+++
T Consensus 440 i~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~~~ 477 (487)
T PLN02676 440 VYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKKKK 477 (487)
T ss_pred eEEeccccccccccchHHHHHHHHHHHHHHHHHhccCc
Confidence 9999998652 3499999999999999999887654
No 19
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.89 E-value=1.1e-21 Score=176.23 Aligned_cols=234 Identities=21% Similarity=0.258 Sum_probs=172.2
Q ss_pred eeccchhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhc-cCC-CCHHHH
Q 021616 50 GSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSL-LRP-LSVDAA 127 (310)
Q Consensus 50 ~~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~l-l~~-~~~~~~ 127 (310)
+...|||+.|+++++++|+..|+++++|.+|.+.++| |.|++ .+. .++.+|+||+|+|+..+..+ +.+ .+++..
T Consensus 202 ~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q~~~g-V~Vt~--~~~-~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~ 277 (450)
T COG1231 202 LQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQDGDG-VTVTA--DDV-GQYVADYVLVTIPLAILGQIDFAPLLPAEYK 277 (450)
T ss_pred hccCccHHHHHHHHHHHhhceEEecCceeeEEEcCCe-EEEEe--CCc-ceEEecEEEEecCHHHHhhcccCCCCCHHHH
Confidence 4444999999999999999999999999999999997 88887 452 26899999999999999887 444 566788
Q ss_pred hhccCCCCCCEEEEEEEecCCccccccccCCCcCcce-EEecCCCCCceeEEEeccCCCCCCCCCCc-EEEEEEecCCCC
Q 021616 128 GALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFG-QLHPRSQGVETLGTIYSSSLFPNRAPAGR-VLLLNYIGGATN 205 (310)
Q Consensus 128 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g-~l~~~~~~~~~~~~~~~s~~~p~~~p~g~-~~l~~~~~g~~~ 205 (310)
++++..+|.++.++.+.|++++|... .-++ ..+. +..+.-+.++|. +.. +|. .++..+.-|..+
T Consensus 278 ~a~~~~~y~~~~K~~v~f~rpFWee~-------~~l~G~~~t---D~~~~~i~~~s~--~~~--~G~gVl~g~~~~g~~A 343 (450)
T COG1231 278 QAAKGVPYGSATKIGVAFSRPFWEEA-------GILGGESLT---DLGLGFISYPSA--PFA--DGPGVLLGSYAFGDDA 343 (450)
T ss_pred HHhcCcCcchheeeeeecCchhhhhc-------ccCCceEee---cCCcceEecCcc--ccC--CCceEEEeeeeccccc
Confidence 88999999999999999999999742 1132 2222 222233455555 222 233 444445556667
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEE-EEEecCCC------CCCCCCChHHHHHHHHHHhhhcCCCCeEEee
Q 021616 206 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVL-GVRVWQQA------IPQFLVGHLDLLDAAKSSLRDNGYQGLFLGG 278 (310)
Q Consensus 206 ~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~-~~~rw~~a------~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG 278 (310)
..+..+++++..+.++..+.+++|... ..+... ...+|... ...|.+|... ++.+.+.. +.++|+|||
T Consensus 344 ~~~~~~~~~~r~~~vl~~l~~~~g~~a-~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~---~~~~~l~~-p~gRIh~Ag 418 (450)
T COG1231 344 LVIDALPEAERRQKVLARLAKLFGDEA-ADPFDYGASVDWSKDPWTLGGTAAYPPGQRT---KLYPTLPA-PHGRIHFAG 418 (450)
T ss_pred eeEecCCHHHHHHHHHHhHhhhCChhh-ccccccceeeecccCCcCCccccccCCcccc---cccccccC-CCCceEEee
Confidence 778899999999999999999999653 455544 77788642 3334444322 33344554 568999999
Q ss_pred -cccC--CCchhHHHHHHHHHHHHHHHHhhh
Q 021616 279 -NYVA--GVALGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 279 -~~~~--g~gv~~ai~sG~~aA~~i~~~l~~ 306 (310)
++.. +..++|||+||.+||.+|...+++
T Consensus 419 tEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~s 449 (450)
T COG1231 419 TEHASEFGGWLEGAIRSGQRAAAEIHALLSS 449 (450)
T ss_pred ecccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 5432 445999999999999999988765
No 20
>PLN02612 phytoene desaturase
Probab=99.86 E-value=5.4e-20 Score=176.59 Aligned_cols=238 Identities=15% Similarity=0.174 Sum_probs=154.7
Q ss_pred eeeeccchh-hHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCCCC
Q 021616 48 TVGSFRKGL-TMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLS 123 (310)
Q Consensus 48 ~~~~~~gG~-~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~ 123 (310)
.+..+.|++ +.|++.|++.+ +++|++|++|++|+.++++ +.+.+...+| +++.||+||+|+|+..+..|++...
T Consensus 298 ~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g-~v~~v~~~~G-~~~~ad~VI~a~p~~~l~~Ll~~~~ 375 (567)
T PLN02612 298 KMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDG-TVKHFLLTNG-SVVEGDVYVSATPVDILKLLLPDQW 375 (567)
T ss_pred eEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCC-cEEEEEECCC-cEEECCEEEECCCHHHHHHhCcchh
Confidence 344555554 56778887754 5689999999999997665 3322223567 4789999999999999998886532
Q ss_pred --HHHHhhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEec-cCCCCCCCCCCcEEEEEEe
Q 021616 124 --VDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYS-SSLFPNRAPAGRVLLLNYI 200 (310)
Q Consensus 124 --~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~-s~~~p~~~p~g~~~l~~~~ 200 (310)
....+.++++.+.++++++++|+++.+. +.. +.++.. .. ...++++ |...+...+++..++.+.+
T Consensus 376 ~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~-------~~~--~~~~~~-~~--~~~~~~d~S~~~~~~~~~~~~ll~~~~ 443 (567)
T PLN02612 376 KEIPYFKKLDKLVGVPVINVHIWFDRKLKN-------TYD--HLLFSR-SP--LLSVYADMSTTCKEYYDPNKSMLELVF 443 (567)
T ss_pred cCcHHHHHHHhcCCCCeEEEEEEECcccCC-------CCC--ceeecC-CC--CceeehhhhhcchhhcCCCCeEEEEEE
Confidence 2345556678888999999999998643 111 223332 21 1222332 1112223344556666554
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCC-----CCcEEEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeE
Q 021616 201 GGATNLGILSKKESELVEAVDRDLRKMLINPNAK-----DPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLF 275 (310)
Q Consensus 201 ~g~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~-----~p~~~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~ 275 (310)
+ .+..|..+++|++++.++++|++++|..... .+..+.+.+.+.++..+.+|.... ++.+.+ +.+|||
T Consensus 444 ~--~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~----rp~~~t-Pi~~l~ 516 (567)
T PLN02612 444 A--PAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPC----RPLQRS-PIEGFY 516 (567)
T ss_pred E--cChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCccc----CccccC-ccCCEE
Confidence 3 3456778999999999999999999865211 122333334444433334443221 222333 568999
Q ss_pred EeecccC-C--CchhHHHHHHHHHHHHHHHHhhh
Q 021616 276 LGGNYVA-G--VALGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 276 ~aG~~~~-g--~gv~~ai~sG~~aA~~i~~~l~~ 306 (310)
|||||+. + .++++|+.||++||++|++.+..
T Consensus 517 lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 517 LAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred EeecceeCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 9999974 2 46999999999999999988744
No 21
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.84 E-value=4.8e-19 Score=166.63 Aligned_cols=226 Identities=17% Similarity=0.186 Sum_probs=149.5
Q ss_pred hhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcE-EEEEECCCCeE--EEecCEEEEcCCchHHHhccCCCC--HHHH
Q 021616 56 LTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEY-SLTYETPEGLV--SLRSRSVVMTVPSYVASSLLRPLS--VDAA 127 (310)
Q Consensus 56 ~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~-~v~~~~~~g~~--~~~ad~VI~a~p~~~~~~ll~~~~--~~~~ 127 (310)
++.|++.|.+.+ +++|++|++|++|...+++.+ .|++.+.+|++ ++.+|+||+|+|++.+.++++... ....
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~ 291 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFF 291 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHH
Confidence 566777777766 568999999999987666522 34442222211 689999999999999999986532 2345
Q ss_pred hhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCCCC
Q 021616 128 GALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLG 207 (310)
Q Consensus 128 ~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~~~ 207 (310)
+.++++++.++.++++.|+++.+. . .+++++.... ......+.+..++...| +..++.+++++ +..
T Consensus 292 ~~~~~~~~~~~~~v~l~~~~~~~~--------~--~~~~~~~~~~-~~~~~~~s~~~~~~~~~-~~~l~~~~~~~--~~~ 357 (453)
T TIGR02731 292 QKLNGLEGVPVINVHIWFDRKLTT--------V--DHLLFSRSPL-LSVYADMSETCKEYADP-DKSMLELVFAP--AAD 357 (453)
T ss_pred HHhhcCCCCcEEEEEEEEccccCC--------C--CceeeeCCCc-ceeecchhhhChhhcCC-CCeEEEEEecC--hhh
Confidence 667778888999999999987542 1 1345543321 11111122233333333 45677766653 245
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCC----CCCCcEEEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccC-
Q 021616 208 ILSKKESELVEAVDRDLRKMLINPN----AKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVA- 282 (310)
Q Consensus 208 ~~~~~~eel~~~~~~~l~~~~~~~~----~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~- 282 (310)
+.++++|++++.++++|++++|... ...+.+....+.+.+.+.+.||.... .+.+.+ +.+||||||+|+.
T Consensus 358 ~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~----~~~~~~-p~~~l~~AG~~~a~ 432 (453)
T TIGR02731 358 WIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQY----RPHQKT-PIPNFFLAGDYTKQ 432 (453)
T ss_pred hhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhh----CccccC-ccCCEEEeehhccC
Confidence 6788999999999999999998521 11233444455566655566775432 233444 5689999999964
Q ss_pred C--CchhHHHHHHHHHHHHH
Q 021616 283 G--VALGRCVESAYEVASEV 300 (310)
Q Consensus 283 g--~gv~~ai~sG~~aA~~i 300 (310)
+ .+|++||.||++||++|
T Consensus 433 ~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 433 KYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred cccccHHHHHHHHHHHHHHh
Confidence 1 36999999999999987
No 22
>PLN02487 zeta-carotene desaturase
Probab=99.81 E-value=6.2e-18 Score=161.12 Aligned_cols=244 Identities=13% Similarity=0.152 Sum_probs=165.5
Q ss_pred CceeeeccchhhH-HHHHHHHHhc---cceeeCceeeeEEEcC--CC---cEEEEEEC-CCCeEEEecCEEEEcCCchHH
Q 021616 46 GQTVGSFRKGLTM-LPEAISKRLG---SKVKLSWKLSGVKKLD--SG---EYSLTYET-PEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 46 ~~~~~~~~gG~~~-L~~~L~~~l~---~~i~~~~~V~~I~~~~--~~---~~~v~~~~-~~g~~~~~ad~VI~a~p~~~~ 115 (310)
...++.++||+++ |++.+++.|. ++|+++++|++|..++ +| .+.|++.. .++ +++.+|+||+|+|++.+
T Consensus 283 ~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~-~~~~aD~VV~A~p~~~~ 361 (569)
T PLN02487 283 ASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEK-EIVKADAYVAACDVPGI 361 (569)
T ss_pred cceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCc-eEEECCEEEECCCHHHH
Confidence 3447899999996 9999998874 5899999999999874 32 13344421 223 46889999999999999
Q ss_pred HhccCCCCHH--HHhhccCCCCCCEEEEEEEecCCccccccccCC--------CcCcce-EEecCCCCCceeEEE-eccC
Q 021616 116 SSLLRPLSVD--AAGALSQFYYPPVAAVSVSYPKEAIRTECLIDG--------ELKGFG-QLHPRSQGVETLGTI-YSSS 183 (310)
Q Consensus 116 ~~ll~~~~~~--~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~--------~~~g~g-~l~~~~~~~~~~~~~-~~s~ 183 (310)
.+|+++..+. ..+.+..+.+.+|++|+|.|+++.. +++. +..|+. +++..+..-.+.+.+ +++.
T Consensus 362 ~~Llp~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~----~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~ 437 (569)
T PLN02487 362 KRLLPEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVT----EMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSP 437 (569)
T ss_pred HHhCCchhhccHHHhHHhcCCCeeEEEEEEEeccccc----ccccccccccccccccccccccccCCCcceEeeeecCCH
Confidence 9999875332 2456678888999999999998532 1110 011121 111111111111111 1110
Q ss_pred -CCCCCCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 021616 184 -LFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAA 262 (310)
Q Consensus 184 -~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~ 262 (310)
.+ ....+| ..|.+++.+. ..+..+++++|++.+.++|.+++|......+.+..+.+..++.....||... +
T Consensus 438 ~~~-~~~~~g-~~l~~vis~a--~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~----~ 509 (569)
T PLN02487 438 EDY-YKEGEG-SLIQAVLTPG--DPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDP----F 509 (569)
T ss_pred HHH-cccCCc-eEEEEEEcCC--ccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccc----c
Confidence 00 011123 4677777543 4677899999999999999999987644557788889999988888888542 2
Q ss_pred HHHhhhcCCCCeEEeecccC---CCchhHHHHHHHHHHHHHHHH
Q 021616 263 KSSLRDNGYQGLFLGGNYVA---GVALGRCVESAYEVASEVSNF 303 (310)
Q Consensus 263 ~~~~~~~~~~~l~~aG~~~~---g~gv~~ai~sG~~aA~~i~~~ 303 (310)
++...+ +.+|||+||||+. ..++|+|++||++||+.|++.
T Consensus 510 RP~~~T-~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~ 552 (569)
T PLN02487 510 RPDQKT-PISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEA 552 (569)
T ss_pred CCCCCC-CCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHH
Confidence 233444 5789999999965 246999999999999999875
No 23
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.81 E-value=2.1e-18 Score=162.59 Aligned_cols=242 Identities=16% Similarity=0.189 Sum_probs=156.1
Q ss_pred CceeeeccchhhH-HHHHHHHHh---ccceeeCceeeeEEEcC--CC---cEEEEEECCCCeEEEecCEEEEcCCchHHH
Q 021616 46 GQTVGSFRKGLTM-LPEAISKRL---GSKVKLSWKLSGVKKLD--SG---EYSLTYETPEGLVSLRSRSVVMTVPSYVAS 116 (310)
Q Consensus 46 ~~~~~~~~gG~~~-L~~~L~~~l---~~~i~~~~~V~~I~~~~--~~---~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~ 116 (310)
+..+..++||++. +.+.|.+.| +++|+++++|++|..++ ++ .+.|.+...+|.+++.||+||+|+|++.+.
T Consensus 207 ~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~ 286 (474)
T TIGR02732 207 ASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIK 286 (474)
T ss_pred cceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHH
Confidence 3456677788766 334455554 46899999999999864 33 122334222222468999999999999999
Q ss_pred hccCCCCH--HHHhhccCCCCCCEEEEEEEecCCccccccccCC-----C---cCcce-EEecCCCCCceeEEEeccC-C
Q 021616 117 SLLRPLSV--DAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDG-----E---LKGFG-QLHPRSQGVETLGTIYSSS-L 184 (310)
Q Consensus 117 ~ll~~~~~--~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~-----~---~~g~g-~l~~~~~~~~~~~~~~~s~-~ 184 (310)
+|+++..+ ...+.+..+.+.+|.+|+|.|+++... |.. . ..++. +++..+..-. ++++-. .
T Consensus 287 ~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~ 359 (474)
T TIGR02732 287 RLLPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTE----LQDLAKRKQLKRAAGLDNLLYTADADFS---CFADLALT 359 (474)
T ss_pred hhCChhhhcCHHHhhHhcCCCCCeEEEEEEecccccc----ccchhhhhcccccccccccccccCccce---eeehhhcc
Confidence 99976422 245667788999999999999975321 110 0 00111 1111111101 111200 0
Q ss_pred CCC-CCCCC-cEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCChHHHHHHH
Q 021616 185 FPN-RAPAG-RVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAA 262 (310)
Q Consensus 185 ~p~-~~p~g-~~~l~~~~~g~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~ 262 (310)
.+. ..+.+ ..++.+.+... ..+..++++++++.++++|++++|......+.+..+.+..++.+.+.||+...+
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~--- 434 (474)
T TIGR02732 360 SPDDYYKEGQGSLLQCVLTPG--DPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFR--- 434 (474)
T ss_pred CHHHHhccCCCeEEEEEEeCh--hhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccC---
Confidence 011 11122 23455555432 356679999999999999999998654455677788899999988889986432
Q ss_pred HHHhhhcCCCCeEEeecccCC---CchhHHHHHHHHHHHHHH
Q 021616 263 KSSLRDNGYQGLFLGGNYVAG---VALGRCVESAYEVASEVS 301 (310)
Q Consensus 263 ~~~~~~~~~~~l~~aG~~~~g---~gv~~ai~sG~~aA~~i~ 301 (310)
+...+ +.+|||+||||+.. .++|+|++||++||+.|+
T Consensus 435 -P~~~t-~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 435 -PDQKT-PISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred -CCCCC-CCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 33333 56899999999763 579999999999999874
No 24
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.79 E-value=1.9e-18 Score=155.40 Aligned_cols=244 Identities=18% Similarity=0.235 Sum_probs=170.9
Q ss_pred eeccchhhHHHHHHHHHhcc---------ceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHh---
Q 021616 50 GSFRKGLTMLPEAISKRLGS---------KVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS--- 117 (310)
Q Consensus 50 ~~~~gG~~~L~~~L~~~l~~---------~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~--- 117 (310)
-..+-|+..+.+-|++.++. +++++++|..|+.++.+.+.|++ .|| +.+.||+||+|+|+-++.+
T Consensus 216 ~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c--~dg-~v~~adhVIvTvsLGvLk~~h~ 292 (498)
T KOG0685|consen 216 IWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRC--SDG-EVFHADHVIVTVSLGVLKEQHH 292 (498)
T ss_pred eechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEE--eCC-cEEeccEEEEEeechhhhhhhh
Confidence 45566899999999987642 46666999999999755578877 688 5799999999999999977
Q ss_pred -ccC-CCCHHHHhhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeE---------EEeccCCCC
Q 021616 118 -LLR-PLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLG---------TIYSSSLFP 186 (310)
Q Consensus 118 -ll~-~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~---------~~~~s~~~p 186 (310)
++. +++....++++++.+.++.+++|.|.+++|+. ++.++.+|+-...-..+.. +.|....
T Consensus 293 ~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~------~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~-- 364 (498)
T KOG0685|consen 293 KLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPS------DWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVS-- 364 (498)
T ss_pred hhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCC------CCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcC--
Confidence 764 45556789999999999999999999999863 3555655543322000000 1111111
Q ss_pred CCCCCCcEEEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCC------CCCCCCCChH----
Q 021616 187 NRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQ------AIPQFLVGHL---- 256 (310)
Q Consensus 187 ~~~p~g~~~l~~~~~g~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~------a~p~~~~g~~---- 256 (310)
.+| .+|.+++.|..+..+..++||++.+.+...|.++++.....+|..+..+.|.. ++...++|..
T Consensus 365 -~~~---~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~ 440 (498)
T KOG0685|consen 365 -WAP---NVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDT 440 (498)
T ss_pred -cch---hhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeecccccccc
Confidence 112 47888898888888889999999999999999999865556777777777852 2322233311
Q ss_pred HHHHHHHHHhhhcCCCCeEEeecccC---CCchhHHHHHHHHHHHHHHHHhhhcc
Q 021616 257 DLLDAAKSSLRDNGYQGLFLGGNYVA---GVALGRCVESAYEVASEVSNFLSQYA 308 (310)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~aG~~~~---g~gv~~ai~sG~~aA~~i~~~l~~~~ 308 (310)
..++...+.......+.|.|||++++ ...+.||++||++.|++|++...+.+
T Consensus 441 ~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~~~ 495 (498)
T KOG0685|consen 441 GALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYESST 495 (498)
T ss_pred chhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHhhc
Confidence 11221111111112357999999976 35589999999999999998765543
No 25
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.75 E-value=3.7e-17 Score=155.37 Aligned_cols=245 Identities=16% Similarity=0.158 Sum_probs=148.5
Q ss_pred eeeeccchhhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECC-CC-eEEEecCEEEEcCCchHHHhccCC-
Q 021616 48 TVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETP-EG-LVSLRSRSVVMTVPSYVASSLLRP- 121 (310)
Q Consensus 48 ~~~~~~gG~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~-~g-~~~~~ad~VI~a~p~~~~~~ll~~- 121 (310)
.+++++|||++|+++|++.+ +++|+++++|++|..++++...|.+.+. +| .+++.||+||+|+|+..+..++++
T Consensus 223 G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~ 302 (492)
T TIGR02733 223 GLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPL 302 (492)
T ss_pred CceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcc
Confidence 46889999999999999998 4689999999999988763222333111 11 146899999999999999998863
Q ss_pred -CCHHHHhhccCCCCCC-EEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEE
Q 021616 122 -LSVDAAGALSQFYYPP-VAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNY 199 (310)
Q Consensus 122 -~~~~~~~~l~~~~~~~-~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~ 199 (310)
.++...+.++++++.+ .+++++++++...+.. . ...+..++.. . ...-+. .++..|..+|+|+..++++
T Consensus 303 ~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~-~----~~~~~~~~~~--~-~~~~v~-~~~~d~~~aP~G~~~l~~~ 373 (492)
T TIGR02733 303 GLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVD-C----PPHLQFLSDH--Q-GSLFVS-ISQEGDGRAPQGEATLIAS 373 (492)
T ss_pred cCCHHHHHHHhcCCCCCceEEEEEeecccccCCC-C----CcceeeccCC--C-ceEEEE-eCCccccCCCCCceEEEEE
Confidence 3345566778888875 5688899987432100 0 0112222221 1 111111 2233455788898877555
Q ss_pred ecCCCC--CCC----CCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEE---ecCC--CCCC---CCCChHHHH-HHHHH
Q 021616 200 IGGATN--LGI----LSKKESELVEAVDRDLRKMLINPNAKDPLVLGVR---VWQQ--AIPQ---FLVGHLDLL-DAAKS 264 (310)
Q Consensus 200 ~~g~~~--~~~----~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~---rw~~--a~p~---~~~g~~~~~-~~~~~ 264 (310)
+..... ..+ +..-++++.+.+++.|++.+|.. ....+...+. .|.. ..+. |...+.... ..++.
T Consensus 374 ~~~~~~~~~~~~~~~y~~~k~~~~~~il~~le~~~p~l-~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~ 452 (492)
T TIGR02733 374 SFTDTNDWSSLDEEDYTAKKKQYTQTIIERLGHYFDLL-EENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGL 452 (492)
T ss_pred cCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHCCCc-cccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCC
Confidence 432111 111 11224568888999999998765 3434333332 1111 0111 111111000 00111
Q ss_pred HhhhcCCCCeEEeecccC-CCchhHHHHHHHHHHHHHHHH
Q 021616 265 SLRDNGYQGLFLGGNYVA-GVALGRCVESAYEVASEVSNF 303 (310)
Q Consensus 265 ~~~~~~~~~l~~aG~~~~-g~gv~~ai~sG~~aA~~i~~~ 303 (310)
... .+.+|||+||++++ |.|+++++.||+.+|+.|++.
T Consensus 453 ~~~-t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 453 SSR-TPVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred CCC-CCCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 112 26789999999987 789999999999999999753
No 26
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=5.1e-16 Score=145.65 Aligned_cols=235 Identities=21% Similarity=0.278 Sum_probs=166.5
Q ss_pred eeccchhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHh--c-c-CCCCHH
Q 021616 50 GSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS--L-L-RPLSVD 125 (310)
Q Consensus 50 ~~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~--l-l-~~~~~~ 125 (310)
..+.+|+..++.+|++.| +|+++..|..|.+.+++.+.+++++.+ .+.+|+||+|+|+.++.. + + |+++..
T Consensus 212 ~~~~~G~~~v~~~la~~l--~I~~~~~v~~i~~~~~~~~~~~~~~~~---~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~ 286 (501)
T KOG0029|consen 212 LLMKGGYEPVVNSLAEGL--DIHLNKRVRKIKYGDDGAVKVTVETGD---GYEADAVVVTVPLGVLKSGLIEFSPPLPRW 286 (501)
T ss_pred hHhhCCccHHHhhcCCCc--ceeeceeeEEEEEecCCceEEEEECCC---eeEeeEEEEEccHHHhccCceeeCCCCcHH
Confidence 678999999999999977 999999999999998864456664433 389999999999999987 3 3 444445
Q ss_pred HHhhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCC
Q 021616 126 AAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 205 (310)
Q Consensus 126 ~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~ 205 (310)
..++++++....+.+|.+.|++.+|+. ..+-||.+.......... .|.+.. |. + +...+..++-+..+
T Consensus 287 k~~aI~~lg~g~~~Kv~l~F~~~fW~~------~~d~fg~~~~~~~~~~~~--~f~~~~-~~--~-~~~~l~~~~~~~~a 354 (501)
T KOG0029|consen 287 KQEAIDRLGFGLVNKVILEFPRVFWDQ------DIDFFGIVPETSVLRGLF--TFYDCK-PV--A-GHPVLMSVVVGEAA 354 (501)
T ss_pred HHHHHHhcCCCceeEEEEEeccccCCC------CcCeEEEccccccccchh--hhhhcC-cc--C-CCCeEEEEehhhhh
Confidence 678999999999999999999999952 245567654332222111 222221 21 1 22244445545445
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCC------CCCCCCCChHHHHHHHHHHhhhcCCCC-eEEee
Q 021616 206 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQ------AIPQFLVGHLDLLDAAKSSLRDNGYQG-LFLGG 278 (310)
Q Consensus 206 ~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~------a~p~~~~g~~~~~~~~~~~~~~~~~~~-l~~aG 278 (310)
..+..++++++++.++..|+++|+......|....+.+|.. +++.+.++-... ++ +.+.. +..+ +||||
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~--~y-~~l~~-pi~~~~ffag 430 (501)
T KOG0029|consen 355 ERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGD--DY-DRLAE-PIKNRVFFAG 430 (501)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChh--HH-HHHhc-cccCcEEecc
Confidence 66788999999999999999999943346788899999963 333333333221 11 12233 3345 99999
Q ss_pred cccC---CCchhHHHHHHHHHHHHHHHHhh
Q 021616 279 NYVA---GVALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 279 ~~~~---g~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
+++. -.+|+||+.||.++|..|++.+.
T Consensus 431 e~t~~~~~~tm~GA~~sG~~~a~~i~~~~~ 460 (501)
T KOG0029|consen 431 EATSRKYPGTMHGAYLSGLRAASDILDSLI 460 (501)
T ss_pred hhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence 9864 24599999999999999988765
No 27
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.69 E-value=1.9e-15 Score=144.06 Aligned_cols=244 Identities=17% Similarity=0.073 Sum_probs=151.1
Q ss_pred ceeeeccchhhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHH-hccCCC
Q 021616 47 QTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVAS-SLLRPL 122 (310)
Q Consensus 47 ~~~~~~~gG~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~-~ll~~~ 122 (310)
..+|++.||++.|+++|++.+ +++|+++++|++|..++++.+.|.+ .+| +++.||.||+|+++..+. .|++..
T Consensus 209 ~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~--~~g-~~~~ad~VI~a~~~~~~~~~l~~~~ 285 (502)
T TIGR02734 209 WGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHL--ADG-ERLDADAVVSNADLHHTYRRLLPNH 285 (502)
T ss_pred ceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEE--CCC-CEEECCEEEECCcHHHHHHHhcCcc
Confidence 356789999999999999876 4589999999999987764345654 566 478999999999997765 455432
Q ss_pred C-H-HHHhhccCCCCC-CEEEEEEEecCC--ccccccccCCCcCcceEEecCCC--------------CCceeEEEeccC
Q 021616 123 S-V-DAAGALSQFYYP-PVAAVSVSYPKE--AIRTECLIDGELKGFGQLHPRSQ--------------GVETLGTIYSSS 183 (310)
Q Consensus 123 ~-~-~~~~~l~~~~~~-~~~~v~l~~~~~--~~~~~~~~~~~~~g~g~l~~~~~--------------~~~~~~~~~~s~ 183 (310)
. + ...+.++++++. +.++++++++.. .+.. + ..+.+++..+. ..+.+.+...|.
T Consensus 286 ~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~ 358 (502)
T TIGR02734 286 PRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQ--L-----AHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTV 358 (502)
T ss_pred ccccccccccccCCcCCeeeEEEEeeccccCcCCC--c-----CceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCC
Confidence 2 1 233455666654 678889999831 1210 1 11222221110 123333344455
Q ss_pred CCCCCCCCCcEEEEEEecCCCC---CCCCCCCHHHHHHHHHHHHHHH-hCCCCCCCCcEEEEE----------ecCCCCC
Q 021616 184 LFPNRAPAGRVLLLNYIGGATN---LGILSKKESELVEAVDRDLRKM-LINPNAKDPLVLGVR----------VWQQAIP 249 (310)
Q Consensus 184 ~~p~~~p~g~~~l~~~~~g~~~---~~~~~~~~eel~~~~~~~l~~~-~~~~~~~~p~~~~~~----------rw~~a~p 249 (310)
..|..+|+|+..+.+++..... ..-+...++++.+.+++.|++. +|.. ....+...+. .+.+++
T Consensus 359 ~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~il~~l~~~~~p~l-~~~i~~~~~~TP~t~~~~~~~~~G~~- 436 (502)
T TIGR02734 359 TDPSLAPPGCENLYVLAPVPHLGTADVDWSVEGPRYRDRILAYLEERAIPGL-RDRIVVERTFTPADFRDRYNAWLGSA- 436 (502)
T ss_pred CCCCCCCCCCccEEEEEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhcCCCh-hHheEEEEEcCHHHHHHhcCCCCccc-
Confidence 5577889998777666542211 1112223577899999999998 7655 2333333322 111211
Q ss_pred CCCCChHHHHHH---HHHHhhhcCCCCeEEeecccC-CCchhHHHHHHHHHHHHHHHHhh
Q 021616 250 QFLVGHLDLLDA---AKSSLRDNGYQGLFLGGNYVA-GVALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 250 ~~~~g~~~~~~~---~~~~~~~~~~~~l~~aG~~~~-g~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
|...+ .+.+ +++.....+.+|||+||++++ |.|+++++.||+.+|+.|++.+.
T Consensus 437 -~G~~~--~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~ 493 (502)
T TIGR02734 437 -FSLEH--TLTQSAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLA 493 (502)
T ss_pred -cchhh--chhhcccCCCCCCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 21111 1111 111111225789999999987 78999999999999999998653
No 28
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.63 E-value=4.6e-14 Score=134.19 Aligned_cols=247 Identities=12% Similarity=0.139 Sum_probs=150.2
Q ss_pred ceeeeccchhhHHHHHHHHHhc---cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH-HhccCCC
Q 021616 47 QTVGSFRKGLTMLPEAISKRLG---SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA-SSLLRPL 122 (310)
Q Consensus 47 ~~~~~~~gG~~~L~~~L~~~l~---~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~-~~ll~~~ 122 (310)
..++++.||++.|+++|.+.+. ++|+++++|++|..++++.+.|.+ .+| +++++|.||+|+.+..+ ..|++..
T Consensus 219 ~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~--~~g-~~~~ad~vV~a~~~~~~~~~Ll~~~ 295 (493)
T TIGR02730 219 GGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKL--ADG-EKIYAKRIVSNATRWDTFGKLLKAE 295 (493)
T ss_pred ceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEe--CCC-CEEEcCEEEECCChHHHHHHhCCcc
Confidence 3568899999999999988764 589999999999987664345554 567 47899999999877555 4677532
Q ss_pred --CHHHHhhccCCCCC-CEEEEEEEecCCccccccccCCCcCcceEEecC----CCCCceeEEEeccCCCCCCCCCCcEE
Q 021616 123 --SVDAAGALSQFYYP-PVAAVSVSYPKEAIRTECLIDGELKGFGQLHPR----SQGVETLGTIYSSSLFPNRAPAGRVL 195 (310)
Q Consensus 123 --~~~~~~~l~~~~~~-~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~----~~~~~~~~~~~~s~~~p~~~p~g~~~ 195 (310)
++.....++++++. +.++++++++....+. ....+.++++. ....+.+.+...+...|..+|+|+.+
T Consensus 296 ~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~------~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~ 369 (493)
T TIGR02730 296 NLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPP------GTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHI 369 (493)
T ss_pred ccchhhHHHHhhccCCCceEEEEEEecCccCCC------CCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEE
Confidence 23333344555655 6888999998743210 00111222221 11123333334455557788999888
Q ss_pred EEEEecCCCCCCCCC-------CCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEE---ecCC--CCCCCCCChHHHH--HH
Q 021616 196 LLNYIGGATNLGILS-------KKESELVEAVDRDLRKMLINPNAKDPLVLGVR---VWQQ--AIPQFLVGHLDLL--DA 261 (310)
Q Consensus 196 l~~~~~g~~~~~~~~-------~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~---rw~~--a~p~~~~g~~~~~--~~ 261 (310)
+++++.- +...|.+ ..++++.+.+++.|++++|.. ....+...+. .|.. +.+.-..|..... ..
T Consensus 370 i~~~~~~-~~~~w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l-~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~ 447 (493)
T TIGR02730 370 IHTFTPS-SMEDWQGLSPKDYEAKKEADAERIIDRLEKIFPGL-DSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPG 447 (493)
T ss_pred EEEecCC-ChhhccCCCcHHHHHHHHHHHHHHHHHHHHHCCCh-hhcEEEEEeeCchhHHHHhCCCCcccCCcccccccc
Confidence 8777642 2222211 124668889999999998765 2333333322 1111 1111001111000 00
Q ss_pred HHH-HhhhcCCCCeEEeecccC-CCchhHHHHHHHHHHHHHHHHh
Q 021616 262 AKS-SLRDNGYQGLFLGGNYVA-GVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 262 ~~~-~~~~~~~~~l~~aG~~~~-g~gv~~ai~sG~~aA~~i~~~l 304 (310)
... .-...+.+|||+||++++ |.|+++|+.||+.+|++|++.+
T Consensus 448 ~~~~~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 448 LLPMPFNRTAIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred cccCCCCCCCCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 010 001225789999999987 7899999999999999998753
No 29
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.24 E-value=4.8e-10 Score=100.77 Aligned_cols=241 Identities=17% Similarity=0.129 Sum_probs=141.1
Q ss_pred eeeccchhhHHHHHHHHHhc---cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH-HhccCCC-C
Q 021616 49 VGSFRKGLTMLPEAISKRLG---SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA-SSLLRPL-S 123 (310)
Q Consensus 49 ~~~~~gG~~~L~~~L~~~l~---~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~-~~ll~~~-~ 123 (310)
..++.|||+.+.+++++.+. .+|.++..|++|..+++..+.|.+ +||. ++.+..||+++.++.+ .+|+++. .
T Consensus 256 ~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L--~dG~-ev~sk~VvSNAt~~~Tf~kLlp~e~L 332 (561)
T KOG4254|consen 256 WGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRL--ADGT-EVRSKIVVSNATPWDTFEKLLPGEAL 332 (561)
T ss_pred ccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEe--cCCc-EEEeeeeecCCchHHHHHHhCCCccC
Confidence 57899999999999998874 589999999999988854455665 7884 6788999999877665 5888753 2
Q ss_pred HHHHhhccCCCCC-CEEE----EEEEecCCccccccccCCCcCcceEEe-cC----------------CCCCceeEEEec
Q 021616 124 VDAAGALSQFYYP-PVAA----VSVSYPKEAIRTECLIDGELKGFGQLH-PR----------------SQGVETLGTIYS 181 (310)
Q Consensus 124 ~~~~~~l~~~~~~-~~~~----v~l~~~~~~~~~~~~~~~~~~g~g~l~-~~----------------~~~~~~~~~~~~ 181 (310)
|+.- .++++.+. ++.. .++..+..- ..++|+ .++..-+ .. .+..+.+-+.++
T Consensus 333 Peef-~i~q~d~~spv~k~~~psFl~~~~~~--~~plph---~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siP 406 (561)
T KOG4254|consen 333 PEEF-VIQQLDTVSPVTKDKLPSFLCLPNTK--SLPLPH---HGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIP 406 (561)
T ss_pred Cchh-hhhhcccccccccccCcceeecCCCC--CCCCCc---cceeEEecCchHHHHHHHHhChhhcccccCCeEEEecc
Confidence 2211 33444433 2221 123322211 111332 1222111 11 124566666778
Q ss_pred cCCCCCCCCCCcEEEEEEecCC---CCCCC---CCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecC-----CCCCC
Q 021616 182 SSLFPNRAPAGRVLLLNYIGGA---TNLGI---LSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQ-----QAIPQ 250 (310)
Q Consensus 182 s~~~p~~~p~g~~~l~~~~~g~---~~~~~---~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~-----~a~p~ 250 (310)
|...|.-+|+|++++..|.... |.... .+.-+++..+.+.+.+.++++... ...+...+-.-+ -+.|.
T Consensus 407 S~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfs-ssv~~~dvgTP~t~qr~l~~~~ 485 (561)
T KOG4254|consen 407 SSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFS-SSVESYDVGTPPTHQRFLGRPG 485 (561)
T ss_pred cccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCcc-ceEEEEecCCCchhhHHhcCCC
Confidence 8877777788888887766533 22211 122357889999999999998773 333332221110 01111
Q ss_pred --CCC---ChHHHHHHHHHHhh-----hcCCCCeEEeecccC-CCchhHHHHHHHHHHHHHHHH
Q 021616 251 --FLV---GHLDLLDAAKSSLR-----DNGYQGLFLGGNYVA-GVALGRCVESAYEVASEVSNF 303 (310)
Q Consensus 251 --~~~---g~~~~~~~~~~~~~-----~~~~~~l~~aG~~~~-g~gv~~ai~sG~~aA~~i~~~ 303 (310)
|.+ ++... .+..... +.+.++||+||+..+ |.||.++- |+.+|...+..
T Consensus 486 Gn~~~~~~~ld~g--~l~~Pv~~~s~y~tPI~~LYlcGs~afPGgGV~a~a--G~~~A~~a~~~ 545 (561)
T KOG4254|consen 486 GNIFHGAMGLDQG--YLHRPVMAWSNYSTPIPGLYLCGSGAFPGGGVMAAA--GRLAAHSAILD 545 (561)
T ss_pred CcccCcccccccc--cccCCccccccCCCCCCceEEecCCCCCCCCccccc--hhHHHHHHhhh
Confidence 111 11110 0011111 236799999999966 77777654 88888776544
No 30
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.17 E-value=3.5e-10 Score=107.22 Aligned_cols=241 Identities=15% Similarity=0.119 Sum_probs=129.4
Q ss_pred ceeeeccchhhHHHHHHHHHhc---cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCCCC
Q 021616 47 QTVGSFRKGLTMLPEAISKRLG---SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLS 123 (310)
Q Consensus 47 ~~~~~~~gG~~~L~~~L~~~l~---~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~ 123 (310)
..+++.+|||+.|+++|++.+. ++|+++++|++|...++..+.++. .+| +.+++|.||+++.......+.+...
T Consensus 214 ~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~--~~g-~~~~ad~vv~~~~~~~~~~l~~~~~ 290 (487)
T COG1233 214 GGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRT--SDG-ENIEADAVVSNADPALLARLLGEAR 290 (487)
T ss_pred CCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEec--ccc-ceeccceeEecCchhhhhhhhhhhh
Confidence 3578999999999999998764 699999999999998874355553 566 5789999999999955555544321
Q ss_pred HHHHhhccCCCCC-CEEEEEEEecCCccccccccCCCcCcceEEecCCC-------------CCceeEEEeccCCCCCCC
Q 021616 124 VDAAGALSQFYYP-PVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQ-------------GVETLGTIYSSSLFPNRA 189 (310)
Q Consensus 124 ~~~~~~l~~~~~~-~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~-------------~~~~~~~~~~s~~~p~~~ 189 (310)
. .+......+. +.....+.++.. ... ....+.++..+. ..+.+.+...|...|..+
T Consensus 291 ~--~~~~~~~~~~~~al~~~~g~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~A 360 (487)
T COG1233 291 R--PRYRGSYLKSLSALSLYLGLKGD-LLP-------LAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLA 360 (487)
T ss_pred h--hccccchhhhhHHHHhccCCCCC-Ccc-------hhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccC
Confidence 1 1111222221 233334555442 110 001111221111 000234555666677889
Q ss_pred CCCcEE-EEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEe---cCCC--CCCCCCChHHH-HHHH
Q 021616 190 PAGRVL-LLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRV---WQQA--IPQFLVGHLDL-LDAA 262 (310)
Q Consensus 190 p~g~~~-l~~~~~g~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~r---w~~a--~p~~~~g~~~~-~~~~ 262 (310)
|+|+.. +..+.. .......+...+++.+. ...+++..+..+ .......+.. +..- .+.-.+.+... ..+.
T Consensus 361 P~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~-~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~ 437 (487)
T COG1233 361 PEGKHSTFAQLVP-VPSLGDYDELKESLADA-IDALEELAPGLR-DRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQL 437 (487)
T ss_pred CCCCcceeeeeee-cCcCCChHHHHHHHHHH-HHHHhhcCCCcc-cceeEEEEeChHHHHHhcCCCCCcccchhcChhhh
Confidence 999652 222221 11112222334555555 556777776552 2222222211 1111 12111112111 1111
Q ss_pred ---HHHhhhcCCCCeEEeecccC-CCchhHHHHHHHHHHHHHHHH
Q 021616 263 ---KSSLRDNGYQGLFLGGNYVA-GVALGRCVESAYEVASEVSNF 303 (310)
Q Consensus 263 ---~~~~~~~~~~~l~~aG~~~~-g~gv~~ai~sG~~aA~~i~~~ 303 (310)
++.....+.+|||+||++++ |.|+.++.-++...+..+...
T Consensus 438 ~~~rp~~~~t~i~~LYl~Ga~t~PG~Gv~g~~g~~~a~~~~~~~~ 482 (487)
T COG1233 438 GPFRPPPKSTPIKGLYLVGASTHPGGGVPGVPGSAAAVALLIDLD 482 (487)
T ss_pred cCCCCCCCCCCcCceEEeCCcCCCCCCcchhhhhHHHHHhhhccc
Confidence 11111235689999999987 888998888887777766544
No 31
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.00 E-value=4.5e-09 Score=91.82 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=82.7
Q ss_pred ceeeeccchhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCCCCHHH
Q 021616 47 QTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDA 126 (310)
Q Consensus 47 ~~~~~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~ 126 (310)
+.-.++.||-..-++.|+..+.++|.++++|.+|....+| +.|+. .+| ++..||+||+++-+.++..+|+...|+.
T Consensus 210 p~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdG-v~l~~--~~G-~s~rFD~vViAth~dqAl~mL~e~sp~e 285 (447)
T COG2907 210 PTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDG-VVLVN--ADG-ESRRFDAVVIATHPDQALALLDEPSPEE 285 (447)
T ss_pred CceeEcccchHHHHHHHhccccceeecCCceeeeeeCCCc-eEEec--CCC-CccccceeeeecChHHHHHhcCCCCHHH
Confidence 3356899999999999999998899999999999999998 66664 678 5789999999999999999998877888
Q ss_pred HhhccCCCCCCEEEEEEEec
Q 021616 127 AGALSQFYYPPVAAVSVSYP 146 (310)
Q Consensus 127 ~~~l~~~~~~~~~~v~l~~~ 146 (310)
.+.++.+.|....+|.....
T Consensus 286 ~qll~a~~Ys~n~aVlhtd~ 305 (447)
T COG2907 286 RQLLGALRYSANTAVLHTDA 305 (447)
T ss_pred HHHHHhhhhhhceeEEeecc
Confidence 88999999998777765543
No 32
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.49 E-value=2.4e-06 Score=77.73 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=53.8
Q ss_pred CceeeeccchhhHHHHHHHHHhccceeeCceeeeE-EEcCCCc--EEEEEECCCCeEEEecCEEEEcCCchHHH
Q 021616 46 GQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGV-KKLDSGE--YSLTYETPEGLVSLRSRSVVMTVPSYVAS 116 (310)
Q Consensus 46 ~~~~~~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I-~~~~~~~--~~v~~~~~~g~~~~~ad~VI~a~p~~~~~ 116 (310)
...+|.++||..+|++.|.+.-+.++ ++++|++| ...+++. +.|++....+.....+|.||+|+|.....
T Consensus 117 ~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~~ 189 (368)
T PF07156_consen 117 TGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQSF 189 (368)
T ss_pred cCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccccc
Confidence 45689999999999999999988899 99999999 4445442 46666443333345689999999996543
No 33
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=6.8e-05 Score=69.71 Aligned_cols=248 Identities=14% Similarity=0.111 Sum_probs=146.9
Q ss_pred ceeeeccchhhH-HHHHHHHHhc---cceeeCceeeeEEEcCC-C---cEEEEEECCCCeEEEecCEEEEcCCchHHHhc
Q 021616 47 QTVGSFRKGLTM-LPEAISKRLG---SKVKLSWKLSGVKKLDS-G---EYSLTYETPEGLVSLRSRSVVMTVPSYVASSL 118 (310)
Q Consensus 47 ~~~~~~~gG~~~-L~~~L~~~l~---~~i~~~~~V~~I~~~~~-~---~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~l 118 (310)
...+-+++++.. +...+.+.+. .+++.+.+|..|+.... + .+.+.+. ..-.+...++.++.+...+.+...
T Consensus 204 ~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~ 282 (485)
T COG3349 204 SILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRD 282 (485)
T ss_pred chhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhc
Confidence 335566676554 4456666654 48999999999987762 1 2334331 222234677888888888888888
Q ss_pred cCCCCH--HHHhhccCCCCCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCC-CCCCCCCc-E
Q 021616 119 LRPLSV--DAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLF-PNRAPAGR-V 194 (310)
Q Consensus 119 l~~~~~--~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~-p~~~p~g~-~ 194 (310)
++...+ +..+.+..+...+++++.+.++...+... . ....|+...-........++++++.+. +....+|. .
T Consensus 283 ~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~-~---~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~ 358 (485)
T COG3349 283 LPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTELT-D---RNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGC 358 (485)
T ss_pred CcccccccccccccccccccceeEEEEeecCcccccc-c---cchhhhhhccccccccCCceeeeccccchhhccccchh
Confidence 876544 23344556667799999999987433210 0 011122111001122334455554322 11111121 1
Q ss_pred EEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCe
Q 021616 195 LLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGL 274 (310)
Q Consensus 195 ~l~~~~~g~~~~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l 274 (310)
.+-..++ ....+...+++++.....+++...++.....+ .+.++.+-..++-...||.... ++...+ +.+|+
T Consensus 359 ~le~~~~--~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~----rP~~~T-pv~N~ 430 (485)
T COG3349 359 YLEKVLA--PGWPFLFESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHY----RPEQKT-PIPNL 430 (485)
T ss_pred hhhhhhc--ccccccccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCcccc----CCCCCC-Cccch
Confidence 1111111 12345567889999999999998887653333 4455555555666666764432 233333 57899
Q ss_pred EEeecccC--C-CchhHHHHHHHHHHHHHHHHhhhc
Q 021616 275 FLGGNYVA--G-VALGRCVESAYEVASEVSNFLSQY 307 (310)
Q Consensus 275 ~~aG~~~~--g-~gv~~ai~sG~~aA~~i~~~l~~~ 307 (310)
+++|||.. . .+||+|..||+.||+.|++.+..+
T Consensus 431 ~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~~ 466 (485)
T COG3349 431 LLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGHH 466 (485)
T ss_pred hhccceeecCCcCccchhhhhHHHHHHHHHHhhhhc
Confidence 99999954 2 458999999999999999877643
No 34
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.84 E-value=0.00035 Score=63.96 Aligned_cols=184 Identities=16% Similarity=0.085 Sum_probs=107.9
Q ss_pred eeeeccchhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCCCCHHHH
Q 021616 48 TVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAA 127 (310)
Q Consensus 48 ~~~~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~~ 127 (310)
..+.+++|...|++.|.+.-..+|++|+.+..++..++. |.+. ++ .+. +.||+|.|++.+-.
T Consensus 189 ~q~~P~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~~~~~-~~~~----~~--~~~-~~vi~Tg~id~~f~---------- 250 (377)
T TIGR00031 189 YQGLPKGGYTKLFEKMLDHPLIDVKLNCHINLLKDKDSQ-LHFA----NK--AIR-KPVIYTGLIDQLFG---------- 250 (377)
T ss_pred ccccccccHHHHHHHHHhcCCCEEEeCCccceeeccccc-eeec----cc--ccc-CcEEEecCchHHHh----------
Confidence 456788999999999998744489999988888865442 4332 23 233 88999999988744
Q ss_pred hhccCCCCCCEEEEEEEe-cCCccccccccCCCcCcc-eEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCC
Q 021616 128 GALSQFYYPPVAAVSVSY-PKEAIRTECLIDGELKGF-GQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATN 205 (310)
Q Consensus 128 ~~l~~~~~~~~~~v~l~~-~~~~~~~~~~~~~~~~g~-g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~ 205 (310)
..+.+++|.++-. .+.+ +.... .+. .+-.| ++.++..++.-+...+... ..+++.
T Consensus 251 ~~~g~L~yrsl~f-~~e~~~~~~~----------q~~~~vnyp--~~~~~tRI~e~k~f~~~~~--~~t~i~-------- 307 (377)
T TIGR00031 251 YRFGALQYRSLKF-EWERHEFKNF----------QGYAVVNFP--LNVPITRIVEYKHLTYVGS--KQTIVS-------- 307 (377)
T ss_pred hccCcccceeEEE-EEEEeccccC----------CCCeEEEcC--CCCCcceEEeeecCCCCCC--CCeEEE--------
Confidence 3355678887555 3333 22211 111 22233 2233333332222111110 001110
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeeccc--CC
Q 021616 206 LGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYV--AG 283 (310)
Q Consensus 206 ~~~~~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~--~g 283 (310)
...|..+....+..++|.+...+.....++.+ +.. ..++|+|+|..- .-
T Consensus 308 ---------------------------~E~~~~~~~~~~~pyYpi~~~~~~~~~~~y~~-la~-~~~~v~~~GRlg~y~Y 358 (377)
T TIGR00031 308 ---------------------------KEYPGEWKVGDPEPYYPVNDNKNMALFKKYLE-LAS-REDNLILLGRLAEYQY 358 (377)
T ss_pred ---------------------------eecchhhcCCCceeeeeccCHHHHHHHHHHHH-HHh-cCCCEEEeeeeeEeEe
Confidence 11222222222345577777777777777776 432 246999999862 24
Q ss_pred CchhHHHHHHHHHHHHHH
Q 021616 284 VALGRCVESAYEVASEVS 301 (310)
Q Consensus 284 ~gv~~ai~sG~~aA~~i~ 301 (310)
..|+.||.+|+.+|++++
T Consensus 359 ~nMD~~i~~al~~~~~~~ 376 (377)
T TIGR00031 359 YDMDQAILAALYKAEQLL 376 (377)
T ss_pred ecHHHHHHHHHHHHHHhh
Confidence 679999999999999875
No 35
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.51 E-value=0.058 Score=50.73 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=47.0
Q ss_pred eeeccchhhHHHHHHHHH---hccceeeCceeeeEEEcCCCc-EEEEEECCCCeEEEecCEEEEcCCc
Q 021616 49 VGSFRKGLTMLPEAISKR---LGSKVKLSWKLSGVKKLDSGE-YSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 49 ~~~~~gG~~~L~~~L~~~---l~~~i~~~~~V~~I~~~~~~~-~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
+.+..+|++.|+++|++. .+++++++++|++|..++++. +.|++ .+| +++.|+.||+..+.
T Consensus 224 ~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~--~~G-e~i~a~~VV~~~s~ 288 (443)
T PTZ00363 224 FIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKS--EGG-EVAKCKLVICDPSY 288 (443)
T ss_pred ceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEE--CCC-cEEECCEEEECccc
Confidence 355689999999999854 467999999999999886542 34543 677 57899999996443
No 36
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.82 E-value=0.048 Score=48.97 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=45.6
Q ss_pred eeeeccch---hhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcE-EEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 48 TVGSFRKG---LTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEY-SLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 48 ~~~~~~gG---~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~-~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
.++...+| ...++..|++.+ +.+++.+++|++|+.++++ + .|. +++| ++.||.||+|+-+..-
T Consensus 125 g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~-~~~v~--~~~g--~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 125 AVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEK-VTAIV--TPSG--DVQADQVVLAAGAWAG 194 (337)
T ss_pred EEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCE-EEEEE--cCCC--EEECCEEEEcCChhhh
Confidence 34544566 366777777664 3589999999999987664 4 344 4566 6899999999987654
No 37
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.80 E-value=0.24 Score=45.71 Aligned_cols=202 Identities=15% Similarity=0.120 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHhc----cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH-HhccCCCCHHHHhhc
Q 021616 56 LTMLPEAISKRLG----SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA-SSLLRPLSVDAAGAL 130 (310)
Q Consensus 56 ~~~L~~~L~~~l~----~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~-~~ll~~~~~~~~~~l 130 (310)
...|.+.|.+.+. .+++.++.|+.++.++++ +.+++.. +|+ +++||.||-|--.+.. .+.+. . ...
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~-v~v~l~~-dG~-~~~a~llVgADG~~S~vR~~~~-~-----~~~ 173 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG-VTVTLSF-DGE-TLDADLLVGADGANSAVRRAAG-I-----AEF 173 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc-eEEEEcC-CCc-EEecCEEEECCCCchHHHHhcC-C-----CCc
Confidence 3456666666553 389999999999999986 8888844 884 8999999999776554 33333 0 111
Q ss_pred cCCCCC-CEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCCCCCC
Q 021616 131 SQFYYP-PVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGIL 209 (310)
Q Consensus 131 ~~~~~~-~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~ 209 (310)
....|. .+++++...+.+. ....+.++.+. ..+.+ + |.. +....+..+........+.
T Consensus 174 ~~~~y~~~~l~~~~~~~~~~---------~~~~~~~~~~~----~~~~~-~-----p~~--~~~~~~~~~~~~~~~~~~~ 232 (387)
T COG0654 174 SGRDYGQTALVANVEPEEPH---------EGRAGERFTHA----GPFAL-L-----PLP--DNRSSVVWSLPPGPAEDLQ 232 (387)
T ss_pred cCCCCCceEEEEEeecCCCC---------CCeEEEEecCC----CceEE-E-----ecC--CCceeEEEECChhhHHHHh
Confidence 223344 3444444433211 01111111111 11111 1 111 0112222222222223344
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccC------C
Q 021616 210 SKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVA------G 283 (310)
Q Consensus 210 ~~~~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~------g 283 (310)
.+++++. ..++.+.++... . ........+...+|.-.. . .++ .. .+++.++||..| |
T Consensus 233 ~~~~~~~----~~~l~~~~~~~~-~-~~~~~~~~~~~~~pl~~~----~---a~~-~~---~~Rv~LiGDAAH~~~P~~g 295 (387)
T COG0654 233 GLSDEEF----LRELQRRLGERD-P-LGRVTLVSSRSAFPLSLR----V---AER-YR---RGRVVLIGDAAHAMHPLAG 295 (387)
T ss_pred cCCHHHH----HHHHHHhcCccc-c-cceEEEccccccccccch----h---hhh-ee---cCcEEEEeeccccCCCccc
Confidence 5566655 567777777552 1 222334445555553210 0 011 21 278999999843 5
Q ss_pred CchhHHHHHHHHHHHHHHHHh
Q 021616 284 VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 284 ~gv~~ai~sG~~aA~~i~~~l 304 (310)
-|++-++.-+...|+.|.+..
T Consensus 296 QG~nlgl~Da~~La~~L~~~~ 316 (387)
T COG0654 296 QGANLALEDAAALAEALAAAP 316 (387)
T ss_pred cchhhhhhhHHHHHHHHHHHh
Confidence 577878888888877776543
No 38
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.76 E-value=0.097 Score=48.65 Aligned_cols=57 Identities=19% Similarity=0.112 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhc----cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 57 TMLPEAISKRLG----SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 57 ~~L~~~L~~~l~----~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
..|.+.|.+.+. .+++.+++|++|+.++++ +.|++.+.+++.++++|.||.|.-...
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~i~adlvIgADG~~S 181 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-ATVTLEIEGKQQTLQSKLVVAADGARS 181 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-eEEEEccCCcceEEeeeEEEEeCCCCc
Confidence 346666665542 468889999999988875 888874333334699999999976533
No 39
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.72 E-value=0.63 Score=45.10 Aligned_cols=50 Identities=26% Similarity=0.401 Sum_probs=38.1
Q ss_pred cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH-HHhcc
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV-ASSLL 119 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~-~~~ll 119 (310)
.+|+++++|++++.++++ +.+++.+.+|.+++++|.||.|.-... ..+.+
T Consensus 141 v~v~~~~~v~~i~~~~~~-v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~l 191 (547)
T PRK08132 141 IDLRWKNKVTGLEQHDDG-VTLTVETPDGPYTLEADWVIACDGARSPLREML 191 (547)
T ss_pred cEEEeCCEEEEEEEcCCE-EEEEEECCCCcEEEEeCEEEECCCCCcHHHHHc
Confidence 479999999999998886 877765555644689999999987644 33444
No 40
>PRK08244 hypothetical protein; Provisional
Probab=96.70 E-value=0.35 Score=46.17 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 56 LTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 56 ~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
+..+....++..+.+|+.+++|++|+..+++ +.|++.+.+|.+++++|.||-|.-...
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDG-VEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe-EEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 5555544444456689999999999988886 777765445544799999999976643
No 41
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.66 E-value=0.15 Score=46.75 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=41.4
Q ss_pred hHHHHHHHHHhc----cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 57 TMLPEAISKRLG----SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 57 ~~L~~~L~~~l~----~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
..|.+.|.+.+. .+++.+++|++|..++++ +.|++ .+| +++.||.||.|.....
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~~v~~--~~g-~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-VRVTL--DNG-QQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-EEEEE--CCC-CEEEeeEEEEecCCCh
Confidence 456666666543 468899999999988875 87776 466 4789999999988754
No 42
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=96.55 E-value=0.19 Score=45.96 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=39.1
Q ss_pred hHHHHHHHHHh---c-cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 57 TMLPEAISKRL---G-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 57 ~~L~~~L~~~l---~-~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
..|.+.|.+.+ + .+|+.+++|++|+..+++ +.|++ .+| +++++|.||.|.-..
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~--~~g-~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSDH-VELTL--DDG-QQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe-eEEEE--CCC-CEEEeeEEEEeCCCC
Confidence 34555555544 3 479999999999988775 77765 567 478999999986654
No 43
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=96.48 E-value=0.52 Score=41.15 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=35.6
Q ss_pred HHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 65 KRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 65 ~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
...+.+++.+++|+++...+++ +.+.+. .++ .++++|.||.|+-...
T Consensus 102 ~~~gv~~~~~~~v~~~~~~~~~-~~~~~~-~~~-~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 102 QEAGAELRLGTTVLDVEIHDDR-VVVIVR-GGE-GTVTAKIVIGADGSRS 148 (295)
T ss_pred HHcCCEEEeCcEEeeEEEeCCE-EEEEEc-Ccc-EEEEeCEEEECCCcch
Confidence 3345689999999999988875 776653 233 4799999999988753
No 44
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.47 E-value=0.28 Score=45.15 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=33.3
Q ss_pred cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.+++.+++|++|..++++ +.|++ .+| ..+.+|.||.|.-..
T Consensus 128 ~~~~~~~~v~~i~~~~~~-~~v~~--~~g-~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 128 VTLHCPARVANVERTQGS-VRVTL--DDG-ETLTGRLLVAADGSH 168 (395)
T ss_pred cEEEcCCEEEEEEEcCCe-EEEEE--CCC-CEEEeCEEEEecCCC
Confidence 578999999999888775 87776 456 468999999997764
No 45
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=96.42 E-value=0.22 Score=46.00 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=39.6
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.|.+.|.+.+ +.+++.+++|++|+.++++ +.|++ .+| +++.+|.||.|.-...
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v~v~~--~~g-~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADR-VRLRL--DDG-RRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-EEEEE--CCC-CEEEeCEEEEecCCCc
Confidence 4555555544 3579999999999988875 77776 466 4789999999976643
No 46
>PRK09126 hypothetical protein; Provisional
Probab=96.37 E-value=0.13 Score=47.30 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=38.3
Q ss_pred HHHHHHHHh----ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 59 LPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 59 L~~~L~~~l----~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
|-+.|.+.+ +.+|+.+++|++++..+++ +.|++ .+| +++++|.||.|.-..
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-~~v~~--~~g-~~~~a~~vI~AdG~~ 166 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-AQVTL--ANG-RRLTARLLVAADSRF 166 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-EEEEE--cCC-CEEEeCEEEEeCCCC
Confidence 444454443 3589999999999988775 77776 466 479999999998764
No 47
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.28 E-value=0.42 Score=44.14 Aligned_cols=52 Identities=23% Similarity=0.353 Sum_probs=39.3
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.|.+.|.+.+ +.+++.+++|++|+.++++ +.|++ .+| +++.+|.||.|.-..
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~--~~g-~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEG-VTVTL--SDG-SVLEARLLVAADGAR 166 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-EEEEE--CCC-CEEEeCEEEEcCCCC
Confidence 4555555544 4589999999999988875 77776 466 478999999998664
No 48
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.17 E-value=0.25 Score=45.97 Aligned_cols=53 Identities=13% Similarity=0.270 Sum_probs=39.4
Q ss_pred hHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEE-EEEECCCCeEEEecCEEEEcCCchH
Q 021616 57 TMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYS-LTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 57 ~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~-v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
..++..|.+.+ +.+|+++++|++|+.++++ +. |+. ++| ++.+|+||+|+-+..
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-~~~v~t--~~~--~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGR-ITGVQT--GGG--VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCE-EEEEEe--CCc--EEeCCEEEECCCcch
Confidence 35667776554 5689999999999987764 43 443 455 689999999998854
No 49
>PRK06185 hypothetical protein; Provisional
Probab=96.14 E-value=1.1 Score=41.46 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=40.7
Q ss_pred HHHHHHHHHh----ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH-HHhcc
Q 021616 58 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV-ASSLL 119 (310)
Q Consensus 58 ~L~~~L~~~l----~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~-~~~ll 119 (310)
.+.+.|.+.+ +.+++.+++|+++...+++.+.|++...+|+.++.+|.||.|.-... +.+.+
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~ 175 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALA 175 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHc
Confidence 3444554433 34799999999999887652235554456644789999999987644 33433
No 50
>PRK06834 hypothetical protein; Provisional
Probab=96.12 E-value=0.66 Score=44.31 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=35.2
Q ss_pred hccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 67 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 67 l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.+.+|+.+++|++|+.++++ +.|++ .+| +++++|+||.|.-...
T Consensus 113 ~gv~i~~~~~v~~v~~~~~~-v~v~~--~~g-~~i~a~~vVgADG~~S 156 (488)
T PRK06834 113 LGVPIYRGREVTGFAQDDTG-VDVEL--SDG-RTLRAQYLVGCDGGRS 156 (488)
T ss_pred CCCEEEcCCEEEEEEEcCCe-EEEEE--CCC-CEEEeCEEEEecCCCC
Confidence 34589999999999998886 87776 456 4799999999976643
No 51
>PRK06847 hypothetical protein; Provisional
Probab=96.08 E-value=1.1 Score=40.90 Aligned_cols=53 Identities=23% Similarity=0.376 Sum_probs=39.5
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.|.+.|.+.+ +.+|+++++|++|+..+++ +.|.+ .+| +++.+|.||.|.-...
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-~~v~~--~~g-~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDG-VTVTF--SDG-TTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-EEEEE--cCC-CEEEcCEEEECcCCCc
Confidence 3445555443 4589999999999988775 77775 567 4789999999988744
No 52
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.07 E-value=0.019 Score=47.61 Aligned_cols=53 Identities=17% Similarity=0.414 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 56 LTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 56 ~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
+....+.+++..+.+++++++|++|.+.+++ |.|++ .+| +++.||+||+|+-.
T Consensus 84 v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~--~~~-~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 84 VLDYLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTT--RDG-RTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHTTGGEETS--EEEEEEETTT-EEEEE--TTS--EEEEEEEEE---S
T ss_pred HHHHHHHHHhhcCcccccCCEEEEEEEeccE-EEEEE--Eec-ceeeeeeEEEeeec
Confidence 3344455555555579999999999999997 99997 566 57899999999874
No 53
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.07 E-value=0.34 Score=44.58 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=38.3
Q ss_pred HHHHHHHHHhc---cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 58 MLPEAISKRLG---SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 58 ~L~~~L~~~l~---~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.|.+.|.+.+. ...+.+++|++|+..+++ +.|++ .+| +++++|.||.|.-..
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~-~~v~~--~~g-~~~~a~~vI~AdG~~ 166 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPREDE-VTVTL--ADG-TTLSARLVVGADGRN 166 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCCe-EEEEE--CCC-CEEEEeEEEEecCCC
Confidence 45555555542 234889999999988886 88876 466 479999999997764
No 54
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.00 E-value=0.12 Score=47.60 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=46.2
Q ss_pred eeeccchh---hHHHHHHHHHhc--cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 49 VGSFRKGL---TMLPEAISKRLG--SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 49 ~~~~~gG~---~~L~~~L~~~l~--~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
+|...+|. ..++.+|.+.+. .+|+.+++|.+|+.++++ |.|.+ .+| ..+.+|.||+|+-+..
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~-~~v~t--~~g-~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEG-WQLLD--ANG-EVIAASVVVLANGAQA 190 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCe-EEEEe--CCC-CEEEcCEEEEcCCccc
Confidence 55555663 567777776553 589999999999987775 77765 566 3589999999988764
No 55
>PRK06996 hypothetical protein; Provisional
Probab=96.00 E-value=0.59 Score=43.30 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=38.9
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCC
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVP 111 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p 111 (310)
.|-+.|.+.+ +.+++.+++|++|+.++++ |++++.+.+|++++++|.||-|.-
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v~v~~~~~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADG-VTLALGTPQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-EEEEECCCCcceEEeeeEEEECCC
Confidence 4455555554 3579999999999988886 888874334435799999999955
No 56
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=95.97 E-value=0.18 Score=47.68 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccCCCchhHHHHHH
Q 021616 214 SELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESA 293 (310)
Q Consensus 214 eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~~ai~sG 293 (310)
+...+.+.+.+.++||... . . -..+.|.+-+| +++.+...+.. .. ..+|||+|.-+ .|.|+--+...|
T Consensus 317 ~~~~~~l~~~~~~~fP~L~-~-~--~i~~~W~G~~~-~t~D~~P~iG~----~~--~~~gl~~a~G~-~G~Gv~~a~~~G 384 (460)
T TIGR03329 317 SPYEALLTRSLRKFFPALA-E-V--PIAASWNGPSD-RSVTGLPFFGR----LN--GQPNVFYGFGY-SGNGVAPSRMGG 384 (460)
T ss_pred hHHHHHHHHHHHHhCCCcC-C-C--eeeEEEeceeC-CCCCCCceeee----ec--CCCCEEEEeCc-CCCChhHHHHHH
Confidence 3456677888888998542 1 1 12457876554 34443322111 11 24799998765 577888899999
Q ss_pred HHHHHHHHH
Q 021616 294 YEVASEVSN 302 (310)
Q Consensus 294 ~~aA~~i~~ 302 (310)
+.+|+.|+.
T Consensus 385 ~~lA~li~g 393 (460)
T TIGR03329 385 QILSSLVLG 393 (460)
T ss_pred HHHHHHhcC
Confidence 999998864
No 57
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.94 E-value=1 Score=41.70 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=42.0
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH-HHhcc
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV-ASSLL 119 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~-~~~ll 119 (310)
.|.+.|.+.+ +.+|+.+++|++|+.++++ +.|++ .+| +++++|.||.|.-... ..+.+
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v~v~~--~~g-~~~~a~~vVgAdG~~S~vR~~l 174 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDD-WLLTL--ADG-RQLRAPLVVAADGANSAVRRLA 174 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-EEEEE--CCC-CEEEeCEEEEecCCCchhHHhc
Confidence 4555555544 3479999999999988886 88876 566 4789999999977644 33444
No 58
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.76 E-value=2.1 Score=41.46 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=37.8
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCC-eEEEecCEEEEcCCchHH
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEG-LVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g-~~~~~ad~VI~a~p~~~~ 115 (310)
+.+|+.+++|++|+.++++ +.|++.+.+| ++++++|.||-|.-....
T Consensus 128 gv~v~~g~~v~~i~~~~~~-v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 128 HVRVRFGHEVTALTQDDDG-VTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred CcEEEcCCEEEEEEEcCCe-EEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 3589999999999999886 8888754456 357999999999877554
No 59
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=95.73 E-value=0.85 Score=41.99 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=38.3
Q ss_pred HHHHHHHHh----ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 59 LPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 59 L~~~L~~~l----~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
|-+.|.+.+ +.+++.+++|+++...+++ +.|++ .+| +++++|.||.|.-...
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~--~~g-~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDDDG-WELTL--ADG-EEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-EEEEE--CCC-CEEEeCEEEEeCCCCc
Confidence 444554443 3478899999999988775 88876 466 4789999999977644
No 60
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=95.72 E-value=1.7 Score=40.23 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=40.7
Q ss_pred chhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 54 KGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 54 gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.-+.......+...+.+++.+++|..+..++++ +.+.... ++ .++.|+.||.|.-+.
T Consensus 95 ~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~-~~~~~~~-~~-~e~~a~~vI~AdG~~ 151 (396)
T COG0644 95 AKFDKWLAERAEEAGAELYPGTRVTGVIREDDG-VVVGVRA-GD-DEVRAKVVIDADGVN 151 (396)
T ss_pred HHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCc-EEEEEEc-CC-EEEEcCEEEECCCcc
Confidence 335554444455566799999999999999986 5555432 33 579999999998553
No 61
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=95.61 E-value=0.038 Score=50.20 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=51.0
Q ss_pred ceeeeccchhhHHHHHHHHHhc---cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCC
Q 021616 47 QTVGSFRKGLTMLPEAISKRLG---SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVP 111 (310)
Q Consensus 47 ~~~~~~~gG~~~L~~~L~~~l~---~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p 111 (310)
.++|.....-++|+++|.+++. ++|+++++|.+|+.++++ +.|.+ ++| +++.+|.+|+|+-
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~-f~l~t--~~g-~~i~~d~lilAtG 164 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSG-FRLDT--SSG-ETVKCDSLILATG 164 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCce-EEEEc--CCC-CEEEccEEEEecC
Confidence 3467777889999999998874 589999999999999875 77775 778 4799999999975
No 62
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=95.57 E-value=0.97 Score=41.60 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=35.3
Q ss_pred cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
.+++.+++|++++.++++ +.|++ .+| .++++|.||.|.-....
T Consensus 126 i~i~~~~~v~~~~~~~~~-~~v~~--~~g-~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 126 LTLMCPEKLADLEFSAEG-NRVTL--ESG-AEIEAKWVIGADGANSQ 168 (384)
T ss_pred eEEECCCceeEEEEcCCe-EEEEE--CCC-CEEEeeEEEEecCCCch
Confidence 479999999999998886 88887 567 48999999999877443
No 63
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.56 E-value=0.92 Score=41.42 Aligned_cols=62 Identities=13% Similarity=0.267 Sum_probs=42.9
Q ss_pred eeeeccchh---hHHHHHHHHH---hccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 48 TVGSFRKGL---TMLPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 48 ~~~~~~gG~---~~L~~~L~~~---l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.+|...+|+ ..++..+.+. .+.+++++++|++|...+++ +.|.+ ++| .+.+|.||+|+-...
T Consensus 137 a~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~--~~g--~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 137 ALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDG-VTVTT--ADG--TYEAKKLVVSAGAWV 204 (376)
T ss_pred EEEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCe-EEEEe--CCC--EEEeeEEEEecCcch
Confidence 345555552 3344444433 34689999999999987775 77764 566 589999999998753
No 64
>PRK06184 hypothetical protein; Provisional
Probab=95.46 E-value=2.5 Score=40.43 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=36.4
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
+.+|+++++|++|+.++++ +.+++.+.++.+++++|+||.|.-....
T Consensus 123 gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 123 GHRVEFGCELVGFEQDADG-VTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred CCEEEeCcEEEEEEEcCCc-EEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 4689999999999988886 7776633233357999999999877653
No 65
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.21 E-value=0.99 Score=41.85 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=38.8
Q ss_pred HHHHHHHHhc----cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 59 LPEAISKRLG----SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 59 L~~~L~~~l~----~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
|-+.|.+.+. .+|+++++|++|+.++++ +.|++ .+| +++++|.||.|.-...
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~-~~v~~--~~g-~~~~a~lvIgADG~~S 168 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESE-AWLTL--DNG-QALTAKLVVGADGANS 168 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe-EEEEE--CCC-CEEEeCEEEEeCCCCC
Confidence 4455555442 479999999999988775 77776 567 4799999999987633
No 66
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.02 E-value=0.074 Score=47.86 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=49.6
Q ss_pred Cceeeeccch---hhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEE-EEEECCCCeEEEecCEEEEcCCchH
Q 021616 46 GQTVGSFRKG---LTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYS-LTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 46 ~~~~~~~~gG---~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~-v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
...++...+| ...+++.|.+.+ +.+|+.+++|++|+.++++ |. |.+ ++| + +.+|+||+|+-+..
T Consensus 133 ~~~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~gv~~--~~g-~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 133 EGGVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGR-VTGVRT--SDG-E-IRADRVVLAAGAWS 203 (358)
T ss_dssp EEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTE-EEEEEE--TTE-E-EEECEEEE--GGGH
T ss_pred hhhhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccc-cccccc--ccc-c-cccceeEecccccc
Confidence 3457788888 788998888765 4589999999999999985 76 775 677 4 99999999987754
No 67
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.93 E-value=0.79 Score=45.58 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=47.0
Q ss_pred eeeeccchh---hHHHHHHHHHhc--cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 48 TVGSFRKGL---TMLPEAISKRLG--SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 48 ~~~~~~gG~---~~L~~~L~~~l~--~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.+|...+|. ..++++|.+.+. .+++.+++|++|...+++ |.|.+ .+| ..+.+|.||+|+-...
T Consensus 396 g~~~p~~G~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~-~~v~t--~~g-~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 396 GIFYPQGGWLCPAELCRALLALAGQQLTIHFGHEVARLEREDDG-WQLDF--AGG-TLASAPVVVLANGHDA 463 (662)
T ss_pred cEEeCCCCeeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCE-EEEEE--CCC-cEEECCEEEECCCCCc
Confidence 356666663 467777776664 689999999999988775 87764 566 3578999999988754
No 68
>PRK07190 hypothetical protein; Provisional
Probab=94.90 E-value=3.7 Score=39.24 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=36.5
Q ss_pred hccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 67 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 67 l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
++.+|+.+++|++|+.++++ +.+++ .+| +++.+++||.|.-....
T Consensus 122 ~Gv~v~~~~~v~~l~~~~~~-v~v~~--~~g-~~v~a~~vVgADG~~S~ 166 (487)
T PRK07190 122 AGAAVKRNTSVVNIELNQAG-CLTTL--SNG-ERIQSRYVIGADGSRSF 166 (487)
T ss_pred CCCEEEeCCEEEEEEEcCCe-eEEEE--CCC-cEEEeCEEEECCCCCHH
Confidence 45689999999999998886 77765 456 47999999999887553
No 69
>PRK08013 oxidoreductase; Provisional
Probab=94.85 E-value=2.6 Score=39.00 Aligned_cols=52 Identities=19% Similarity=0.088 Sum_probs=38.9
Q ss_pred HHHHHHHHh----ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 59 LPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 59 L~~~L~~~l----~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
|-+.|.+.+ +.+++.+++|++|+.++++ +.|++ .+| +++++|.||-|--...
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~--~~g-~~i~a~lvVgADG~~S 168 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGENE-AFLTL--KDG-SMLTARLVVGADGANS 168 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-EEEEE--cCC-CEEEeeEEEEeCCCCc
Confidence 445555444 2479999999999988885 88876 467 4799999999977644
No 70
>PRK06126 hypothetical protein; Provisional
Probab=94.78 E-value=4.2 Score=39.35 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=35.4
Q ss_pred cceeeCceeeeEEEcCCCcEEEEEEC-CCCe-EEEecCEEEEcCCchHH
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTYET-PEGL-VSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~~~-~~g~-~~~~ad~VI~a~p~~~~ 115 (310)
.+|+++++|++|+.++++ +.+++.+ .+|+ .++.+|+||.|.-....
T Consensus 142 v~i~~~~~v~~i~~~~~~-v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 142 VTLRYGHRLTDFEQDADG-VTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred ceEEeccEEEEEEECCCe-EEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 489999999999998876 7776643 3453 36899999999877553
No 71
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=94.65 E-value=2.4 Score=38.85 Aligned_cols=51 Identities=20% Similarity=0.147 Sum_probs=36.5
Q ss_pred HHHHHHHHHh---c-cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 58 MLPEAISKRL---G-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 58 ~L~~~L~~~l---~-~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.|.+.|.+.+ + .+++ ++.|++|+..+++ +.|++ .+| .++.+|.||.|.-..
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~-~~v~~--~~g-~~~~a~~vI~adG~~ 166 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDA-ATLTL--ADG-QVLRADLVVGADGAH 166 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe-EEEEE--CCC-CEEEeeEEEEeCCCC
Confidence 3445554444 3 3566 9999999888775 77776 456 478999999997764
No 72
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=94.57 E-value=0.14 Score=47.55 Aligned_cols=63 Identities=13% Similarity=0.277 Sum_probs=42.2
Q ss_pred ceeeeccchhhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 47 QTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 47 ~~~~~~~gG~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
.++|....--.++++.|.+.+ +++|+++++|.+|+.++++.+.|.+ +++ .++.+|.||+|+-.
T Consensus 99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~--~~~-~~~~a~~vILAtGG 164 (409)
T PF03486_consen 99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKT--KNG-GEYEADAVILATGG 164 (409)
T ss_dssp TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEE--TTT-EEEEESEEEE----
T ss_pred CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeec--cCc-ccccCCEEEEecCC
Confidence 456777777888999997765 4689999999999998875477775 344 58999999999653
No 73
>PRK07045 putative monooxygenase; Reviewed
Probab=94.38 E-value=4.1 Score=37.44 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=39.1
Q ss_pred HHHHHHHHHh----ccceeeCceeeeEEEcCCCc-EEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGE-YSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l----~~~i~~~~~V~~I~~~~~~~-~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.|-+.|.+.+ +.+++++++|+.|+.++++. +.|++ .+| +++.+|.||-|.-...
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~--~~g-~~~~~~~vIgADG~~S 165 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTL--SDG-ERVAPTVLVGADGARS 165 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEe--CCC-CEEECCEEEECCCCCh
Confidence 3555555554 24799999999999987752 35555 567 4789999999987754
No 74
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=94.25 E-value=4.4 Score=37.24 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=38.8
Q ss_pred HHHHHHHHhc--cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 59 LPEAISKRLG--SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 59 L~~~L~~~l~--~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
|-+.|.+.+. ..+.+++.|++|+..+++ +.|++ .+| .+++|+.||-|.++...
T Consensus 89 f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~-~~v~~--~~g-~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 89 FYEFLLERAAAGGVIRLNARVTSIEETGDG-VLVVL--ADG-RTIRARVVVDARGPSSP 143 (374)
T ss_pred HHHHHHHHhhhCCeEEEccEEEEEEecCce-EEEEE--CCC-CEEEeeEEEECCCcccc
Confidence 3344444443 468899999999999885 77765 577 48999999999885433
No 75
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=93.57 E-value=0.32 Score=38.70 Aligned_cols=36 Identities=22% Similarity=0.490 Sum_probs=29.4
Q ss_pred eeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCC
Q 021616 72 KLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVP 111 (310)
Q Consensus 72 ~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p 111 (310)
+...+|+.|+..+++ +.|.. .+| ..+.||+||+|+-
T Consensus 119 ~~~~~V~~i~~~~~~-~~v~~--~~g-~~~~~d~VvLa~G 154 (156)
T PF13454_consen 119 HVRAEVVDIRRDDDG-YRVVT--ADG-QSIRADAVVLATG 154 (156)
T ss_pred EEeeEEEEEEEcCCc-EEEEE--CCC-CEEEeCEEEECCC
Confidence 356799999999987 87775 677 4789999999974
No 76
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=93.37 E-value=0.39 Score=44.83 Aligned_cols=61 Identities=11% Similarity=0.212 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhc----cceeeCceeeeEEEcCCCcEEEEEEC-CC-CeEEEecCEEEEcCCchHHH
Q 021616 56 LTMLPEAISKRLG----SKVKLSWKLSGVKKLDSGEYSLTYET-PE-GLVSLRSRSVVMTVPSYVAS 116 (310)
Q Consensus 56 ~~~L~~~L~~~l~----~~i~~~~~V~~I~~~~~~~~~v~~~~-~~-g~~~~~ad~VI~a~p~~~~~ 116 (310)
++.|++.|.+.+. .+++++++|+.|.+.++|.|.|++.+ .+ ...++.|++|++.+-...+.
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 7889988888874 37999999999999988779988632 12 23579999999998776653
No 77
>PRK10015 oxidoreductase; Provisional
Probab=93.27 E-value=7.3 Score=36.56 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=29.1
Q ss_pred CCCeEEeeccc--------CCCchhHHHHHHHHHHHHHHHHhh
Q 021616 271 YQGLFLGGNYV--------AGVALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 271 ~~~l~~aG~~~--------~g~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
.+|+.++||.. .|-|+.-|+.||+.||+.|.+.+.
T Consensus 294 ~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~ 336 (429)
T PRK10015 294 NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKE 336 (429)
T ss_pred cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHh
Confidence 37999999972 346788899999999999988765
No 78
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=93.18 E-value=0.37 Score=44.27 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=46.7
Q ss_pred ceeeeccchhhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 47 QTVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 47 ~~~~~~~gG~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.++|...+--+++++.|...+ +++|+++++|++| ++++ +.+.+. .++ ..+.||.||+|+-..
T Consensus 76 grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~-~~v~~~-~~~-~~~~a~~vIlAtGG~ 140 (376)
T TIGR03862 76 GRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT-LRFETP-DGQ-STIEADAVVLALGGA 140 (376)
T ss_pred CEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc-EEEEEC-CCc-eEEecCEEEEcCCCc
Confidence 456777777888999998776 4689999999999 3343 777752 222 368999999998764
No 79
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=93.04 E-value=4.6 Score=36.89 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=44.5
Q ss_pred eeeeccchh---hHHHHHHHHHhc----cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 48 TVGSFRKGL---TMLPEAISKRLG----SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 48 ~~~~~~gG~---~~L~~~L~~~l~----~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
.++...+|. ..+++.|++.+. ..+..+++|..++... +.+.|.+ .+| ++.||+||+|+-+..-
T Consensus 144 a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t--~~g--~i~a~~vv~a~G~~~~ 213 (387)
T COG0665 144 GLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVET--DGG--TIEADKVVLAAGAWAG 213 (387)
T ss_pred eEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEe--CCc--cEEeCEEEEcCchHHH
Confidence 355666663 457777776653 3577799999999863 3366664 677 4999999999987543
No 80
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=93.00 E-value=0.35 Score=45.06 Aligned_cols=65 Identities=20% Similarity=0.334 Sum_probs=47.1
Q ss_pred eeeccch---hhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 49 VGSFRKG---LTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 49 ~~~~~gG---~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
++...+| ...++.+|++.+ +.+|++|++|+.|+..++|.+.+.+ .+|+++++|+.||.+......
T Consensus 142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~--~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNT--SNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEe--cCCcEEEEeeEEEECCchhHH
Confidence 5666666 556677776665 3589999999999999886244443 566433999999999888553
No 81
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=92.34 E-value=3.6 Score=38.63 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=32.1
Q ss_pred cceeeCceeeeEEEc-------CCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 69 SKVKLSWKLSGVKKL-------DSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~-------~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
.+++.+++|.+|+.. +++ +.|++ .+| ++++||.||-|--....
T Consensus 135 v~i~~~~~v~~i~~~~~~~~~~~~~-v~v~~--~~g-~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 135 VKILNPARLISVTIPSKYPNDNSNW-VHITL--SDG-QVLYTKLLIGADGSNSN 184 (437)
T ss_pred eEEecCCeeEEEEeccccccCCCCc-eEEEE--cCC-CEEEeeEEEEecCCCCh
Confidence 479999999999863 233 66665 577 48999999999766443
No 82
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=91.97 E-value=0.47 Score=45.79 Aligned_cols=58 Identities=14% Similarity=0.268 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHh--ccceeeCceeeeEEEcCC----CcEEEEEECCCCe-EEEecCEEEEcCCchH
Q 021616 56 LTMLPEAISKRL--GSKVKLSWKLSGVKKLDS----GEYSLTYETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 56 ~~~L~~~L~~~l--~~~i~~~~~V~~I~~~~~----~~~~v~~~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
+..-.+..++.. ...|++||+|.+|++.++ |.|.|++. .+|. ++..+|+||+|+-...
T Consensus 86 v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~-~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 86 VLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE-NDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp HHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET-TTTEEEEEEECEEEEEE-SSS
T ss_pred HHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee-cCCeEEEEEeCeEEEcCCCcC
Confidence 333444444443 357999999999998653 35999874 3453 3567999999976543
No 83
>PRK06753 hypothetical protein; Provisional
Probab=91.14 E-value=12 Score=34.12 Aligned_cols=54 Identities=7% Similarity=0.042 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhc-cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 57 TMLPEAISKRLG-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 57 ~~L~~~L~~~l~-~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
+.|-+.|.+.+. .+|+++++|++|+.++++ +.|++ .+| +++.+|.||-|--...
T Consensus 98 ~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~--~~g-~~~~~~~vigadG~~S 152 (373)
T PRK06753 98 QTLIDIIKSYVKEDAIFTGKEVTKIENETDK-VTIHF--ADG-ESEAFDLCIGADGIHS 152 (373)
T ss_pred HHHHHHHHHhCCCceEEECCEEEEEEecCCc-EEEEE--CCC-CEEecCEEEECCCcch
Confidence 346667766664 369999999999987775 88876 567 4789999999977644
No 84
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=90.89 E-value=13 Score=34.08 Aligned_cols=53 Identities=2% Similarity=0.041 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhc----cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 57 TMLPEAISKRLG----SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 57 ~~L~~~L~~~l~----~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
..|-+.|.+.+. .+++++++|++|...+++ +.|++ .++ ++++|.||-|--...
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~--~~~--~~~adlvIgADG~~S 160 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-SIIKF--DDK--QIKCNLLIICDGANS 160 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-EEEEE--cCC--EEeeCEEEEeCCCCc
Confidence 456666666543 368899999999988875 88876 345 789999999976644
No 85
>PRK07538 hypothetical protein; Provisional
Probab=90.65 E-value=14 Score=34.26 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=37.7
Q ss_pred HHHHHHHHhcc-ceeeCceeeeEEEcCCCcEEEEEECC-CC-eEEEecCEEEEcCCchHH
Q 021616 59 LPEAISKRLGS-KVKLSWKLSGVKKLDSGEYSLTYETP-EG-LVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 59 L~~~L~~~l~~-~i~~~~~V~~I~~~~~~~~~v~~~~~-~g-~~~~~ad~VI~a~p~~~~ 115 (310)
|.+.+.+.++. +|+++++|++++.++++ +.+.+.+. +| .++++||.||-|--....
T Consensus 108 L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~~~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 108 LLDAVRERLGPDAVRTGHRVVGFEQDADV-TVVFLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred HHHHHHhhcCCcEEEcCCEEEEEEecCCc-eEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence 33444444453 69999999999988776 66655321 22 247899999999776543
No 86
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=90.60 E-value=1.2 Score=42.45 Aligned_cols=67 Identities=16% Similarity=0.256 Sum_probs=48.1
Q ss_pred eeeeccch---hhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEE-CCCCe-EEEecCEEEEcCCchH
Q 021616 48 TVGSFRKG---LTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYE-TPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 48 ~~~~~~gG---~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~-~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.+|...+| ...++.+|.+.+ +.+|+++++|++|+..+++.|.+++. +.+|+ .++.||+||+|+-...
T Consensus 166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 46666666 467888887766 46899999999999865433777542 23332 3689999999998754
No 87
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=90.58 E-value=0.73 Score=42.87 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=42.8
Q ss_pred HHHHHHHHHhc-cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 58 MLPEAISKRLG-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 58 ~L~~~L~~~l~-~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
.|.+.|.+.+. ..++++++|++|+..+++ |.|++ .+| .++++|.||.|.-....
T Consensus 106 ~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~-~~v~~--~~g-~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 106 DFLDALLKHLPEGIASFGKRATQIEEQAEE-VQVLF--TDG-TEYRCDLLIGADGIKSA 160 (414)
T ss_pred HHHHHHHHhCCCceEEcCCEEEEEEecCCc-EEEEE--cCC-CEEEeeEEEECCCccHH
Confidence 47778877774 368999999999988886 88886 466 37899999999776553
No 88
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=90.49 E-value=1 Score=42.72 Aligned_cols=56 Identities=13% Similarity=0.136 Sum_probs=39.0
Q ss_pred hHHHHHHHHHh---cc--ceeeCceeeeEEEcCCCcEEEEEECCCCe-EEEecCEEEEcCCch
Q 021616 57 TMLPEAISKRL---GS--KVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSY 113 (310)
Q Consensus 57 ~~L~~~L~~~l---~~--~i~~~~~V~~I~~~~~~~~~v~~~~~~g~-~~~~ad~VI~a~p~~ 113 (310)
..+.+.|.+.. +. .|+++++|++|+..+++ |.|++.+.++. .+..||+||+|+-..
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~-w~V~~~~~~~~~~~~~~d~VIvAtG~~ 172 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK-WRVQSKNSGGFSKDEIFDAVVVCNGHY 172 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe-EEEEEEcCCCceEEEEcCEEEEeccCC
Confidence 34555555443 32 49999999999988774 99987533332 246899999998854
No 89
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=90.47 E-value=1.1 Score=42.85 Aligned_cols=55 Identities=22% Similarity=0.396 Sum_probs=40.8
Q ss_pred hHHHHHHHHHh-------c--cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 57 TMLPEAISKRL-------G--SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 57 ~~L~~~L~~~l-------~--~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
..|+..|++.+ + .+|+++++|+.|+..+++.|.|++ .+| ++.||+||+|+-++..
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T--~~G--~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHT--NRG--EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEE--CCC--EEEeCEEEECcChhHH
Confidence 56777775543 3 358999999999988554477765 567 5899999999987653
No 90
>PLN02463 lycopene beta cyclase
Probab=90.26 E-value=17 Score=34.43 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=31.1
Q ss_pred cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.+++ +++|++|+..+++ +.|++ .+| +++.||.||.|+-..
T Consensus 129 V~~~-~~~V~~I~~~~~~-~~V~~--~dG-~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 129 VQFH-QAKVKKVVHEESK-SLVVC--DDG-VKIQASLVLDATGFS 168 (447)
T ss_pred CEEE-eeEEEEEEEcCCe-EEEEE--CCC-CEEEcCEEEECcCCC
Confidence 4564 6799999988775 77876 567 479999999998653
No 91
>PRK07236 hypothetical protein; Provisional
Probab=90.22 E-value=0.88 Score=41.91 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHhcc-ceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 55 GLTMLPEAISKRLGS-KVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 55 G~~~L~~~L~~~l~~-~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
+...|.+.|.+.++. +|+++++|++|+.++++ +.|++ .+| +++.+|.||.|--.
T Consensus 98 ~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v~v~~--~~g-~~~~ad~vIgADG~ 152 (386)
T PRK07236 98 SWNVLYRALRAAFPAERYHLGETLVGFEQDGDR-VTARF--ADG-RRETADLLVGADGG 152 (386)
T ss_pred CHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe-EEEEE--CCC-CEEEeCEEEECCCC
Confidence 456677888877753 69999999999988875 88877 567 47899999999554
No 92
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=89.89 E-value=1.4 Score=41.33 Aligned_cols=56 Identities=20% Similarity=0.343 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCC-eEEEecCEEEEcCCch
Q 021616 55 GLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEG-LVSLRSRSVVMTVPSY 113 (310)
Q Consensus 55 G~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g-~~~~~ad~VI~a~p~~ 113 (310)
|+ .|.+.|.+.+ +.+|+++++|.+++..+++ +.+... .+| +..+++|.||+|+-..
T Consensus 258 G~-rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~-V~~v~~-~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 258 GL-RLQNALRRAFERLGGRIMPGDEVLGAEFEGGR-VTAVWT-RNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred hH-HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCE-EEEEEe-eCCceEEEECCEEEEeCCCc
Confidence 44 5667776665 4589999999999987764 554332 333 3468999999997753
No 93
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=89.71 E-value=1.2 Score=41.23 Aligned_cols=62 Identities=13% Similarity=0.285 Sum_probs=46.0
Q ss_pred eeeeccch---hhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 48 TVGSFRKG---LTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 48 ~~~~~~gG---~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.++...+| ...+.++|.+.+ +.+++++++|.+|+..+++ +.|.. .+| ++.+|.||+|+....
T Consensus 137 al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~-~~V~~--~~g--~i~ad~vV~A~G~~s 204 (393)
T PRK11728 137 AIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANG-VVVRT--TQG--EYEARTLINCAGLMS 204 (393)
T ss_pred eEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe-EEEEE--CCC--EEEeCEEEECCCcch
Confidence 34555555 366778887665 4589999999999987775 76664 456 689999999988753
No 94
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=89.44 E-value=1.3 Score=42.35 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=46.2
Q ss_pred eeeeccch---hhHHHHHHHHHh----ccceeeCceeeeEEEc-CCCcEEEEEE-CCCCe-EEEecCEEEEcCCchH
Q 021616 48 TVGSFRKG---LTMLPEAISKRL----GSKVKLSWKLSGVKKL-DSGEYSLTYE-TPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 48 ~~~~~~gG---~~~L~~~L~~~l----~~~i~~~~~V~~I~~~-~~~~~~v~~~-~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.+|...+| ...|.++|.+.+ +.+++++++|+.|... +++ |.+.+. +.+|+ .+++||+||+|+-+..
T Consensus 172 Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 172 ASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGG-WEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred EEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCC-EEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 34555554 456777776655 3589999999999988 554 887642 23441 2589999999988865
No 95
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=89.44 E-value=17 Score=33.30 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=35.5
Q ss_pred HHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 59 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 59 L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
|.+.|.+.+ +.++ ++++|..+..++++.+.|++ .+| ++++||.||.|+....
T Consensus 87 l~~~l~~~~~~~gv~~-~~~~v~~i~~~~~~~~~v~~--~~g-~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 87 LHEELLQKCPEGGVLW-LERKAIHAEADGVALSTVYC--AGG-QRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHhcCcEE-EccEEEEEEecCCceeEEEe--CCC-CEEEeCEEEECCCCch
Confidence 445554443 3355 46789999887333377775 466 4799999999999875
No 96
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=89.34 E-value=1.8 Score=40.59 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=40.0
Q ss_pred cchhhHHHHHHHHHh---ccceeeCceeeeEEEcC-CCcE-EEEEECCCCeEEEecCEEEEcCCc
Q 021616 53 RKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLD-SGEY-SLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 53 ~gG~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~-~~~~-~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
.++...+++.|.+.+ +.+|+++++|++|..++ ++.+ .|.. +.++ ..+.++.||+|+-.
T Consensus 119 ~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~-~~~~-~~i~ak~VIlAtGG 181 (432)
T TIGR02485 119 RGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLT-TVGT-HRITTQALVLAAGG 181 (432)
T ss_pred cCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEE-cCCc-EEEEcCEEEEcCCC
Confidence 355567888886654 46899999999998763 4422 2332 2233 47899999999884
No 97
>PRK09897 hypothetical protein; Provisional
Probab=88.73 E-value=1.5 Score=42.29 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=37.3
Q ss_pred hHHHHHHHHHh-----ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 57 TMLPEAISKRL-----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 57 ~~L~~~L~~~l-----~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
....+.+.+.+ ...++.+++|+.|+..+++ +.|++. .+| ..+.||+||+|+-.
T Consensus 107 ~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g-~~V~t~-~gg-~~i~aD~VVLAtGh 164 (534)
T PRK09897 107 RDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG-VMLATN-QDL-PSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE-EEEEEC-CCC-eEEEcCEEEECCCC
Confidence 44444444433 1467889999999998886 887752 334 47899999999775
No 98
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=88.46 E-value=20 Score=33.03 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccCCCchhHHHHH
Q 021616 213 ESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVES 292 (310)
Q Consensus 213 ~eel~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~~ai~s 292 (310)
+.+..+.+++.+.+++|... ... ....|....| +++.+...+ ...+.+|+|++.-+ .|.|+-.+-..
T Consensus 308 ~~~~~~~l~~~~~~~~P~l~--~~~--~~~~w~G~~~-~t~D~~PiI-------g~~~~~gl~~a~G~-~g~G~~~ap~~ 374 (407)
T TIGR01373 308 NLPTLEHVLAAILEMFPILS--RVR--MLRSWGGIVD-VTPDGSPII-------GKTPLPNLYLNCGW-GTGGFKATPAS 374 (407)
T ss_pred CHHHHHHHHHHHHHhCCCcC--CCC--eEEEeccccc-cCCCCCcee-------CCCCCCCeEEEecc-CCcchhhchHH
Confidence 45567778888889988652 111 2345765555 344443222 11123789988654 46667777888
Q ss_pred HHHHHHHHHH
Q 021616 293 AYEVASEVSN 302 (310)
Q Consensus 293 G~~aA~~i~~ 302 (310)
|+.+|+.|..
T Consensus 375 G~~la~li~~ 384 (407)
T TIGR01373 375 GTVFAHTLAR 384 (407)
T ss_pred HHHHHHHHhC
Confidence 9999998864
No 99
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=88.45 E-value=2.3 Score=40.74 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=46.4
Q ss_pred eeeeccch---hhHHHHHHHHHh---c-cceeeCceeeeEEEcCCCcEEEEEE-CCCCe-EEEecCEEEEcCCchH
Q 021616 48 TVGSFRKG---LTMLPEAISKRL---G-SKVKLSWKLSGVKKLDSGEYSLTYE-TPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 48 ~~~~~~gG---~~~L~~~L~~~l---~-~~i~~~~~V~~I~~~~~~~~~v~~~-~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.+|...+| ...|.++|.+.+ + .+|+++++|++|+.++++.|.|++. +.+|. .++.||+||+|+-...
T Consensus 171 Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 171 ATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred EEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 34555555 456777776554 3 4899999999999876644777653 23342 2689999999988855
No 100
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=87.76 E-value=1.7 Score=40.51 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 56 LTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 56 ~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
+-.+++.|.+.+ +.+|+++|+|+.|+..++....|. +.+| +++.+|+||+|+--
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~--~~~g-~~i~~~~vvlA~Gr 228 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVK--LTKG-EEIEADYVVLAPGR 228 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEE--ccCC-cEEecCEEEEccCc
Confidence 445666776665 458999999999999887422333 3677 58999999999754
No 101
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=87.68 E-value=0.95 Score=40.29 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=36.1
Q ss_pred ceeeCceeeeEEEcCCCcEEEEEECCCCeE-EEecCEEEEcCCchHH
Q 021616 70 KVKLSWKLSGVKKLDSGEYSLTYETPEGLV-SLRSRSVVMTVPSYVA 115 (310)
Q Consensus 70 ~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~-~~~ad~VI~a~p~~~~ 115 (310)
+|.+|++|..|..+++....|.+.+.+|+. .+.+|.||+|+-....
T Consensus 161 ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 161 KILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred hhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 799999999999877754457776666643 5789999999887654
No 102
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=87.04 E-value=2.8 Score=38.93 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=44.7
Q ss_pred eeeccchhhHHHHHHHHHhc---cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 49 VGSFRKGLTMLPEAISKRLG---SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 49 ~~~~~gG~~~L~~~L~~~l~---~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
+|...+....+.+.|.+.+. .+++++++|++|...+++ +.|.+ ++ .++.+|.||+|+....
T Consensus 97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~~v~~---~~-~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNG-FGVET---SG-GEYEADKVILATGGLS 160 (400)
T ss_pred eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCe-EEEEE---CC-cEEEcCEEEECCCCcc
Confidence 44444455677887777653 589999999999887664 77765 33 3689999999998743
No 103
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=86.78 E-value=2.2 Score=38.99 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=42.4
Q ss_pred eeeeccch---hhHHHHHHHHH---hccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 48 TVGSFRKG---LTMLPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 48 ~~~~~~gG---~~~L~~~L~~~---l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.++...+| ...+.+.|.+. .+.+++.+++|++|+.++++ +.|.+ .+| ++.+|.||+|+-..
T Consensus 133 ~~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~-~~v~~--~~~--~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 133 GLLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELL-VTVKT--TKG--SYQANKLVVTAGAW 199 (380)
T ss_pred EEEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCe-EEEEe--CCC--EEEeCEEEEecCcc
Confidence 34444455 23455555443 45689999999999987764 76664 455 68999999998874
No 104
>PRK06175 L-aspartate oxidase; Provisional
Probab=86.76 E-value=2.1 Score=40.28 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=36.0
Q ss_pred HHHHHHHHHh----ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 58 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 58 ~L~~~L~~~l----~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
.+++.|.+.+ +.+|+++++|++|..+++..+.|...+.++...+.|+.||+|+-.
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 3566665443 358999999999987655323333222233236899999999876
No 105
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=86.75 E-value=2.1 Score=39.68 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=42.9
Q ss_pred eeeccchh---hHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCC--eEEEecCEEEEcCCchH
Q 021616 49 VGSFRKGL---TMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEG--LVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 49 ~~~~~gG~---~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g--~~~~~ad~VI~a~p~~~ 114 (310)
+|...+|. ..++..|.+.+ +.+|+.+++|++|+.++++ +.+.+.+.++ ..++.+|+||+|+-+..
T Consensus 186 ~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 186 YYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGG-VVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred EEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-EEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 44444432 34555555444 4689999999999987775 7665533221 12689999999998864
No 106
>PRK07588 hypothetical protein; Provisional
Probab=86.73 E-value=2.1 Score=39.44 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=39.1
Q ss_pred HHHHHHHHHhc--cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRLG--SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l~--~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.|-+.|.+.+. .+|+++++|++|+..+++ +.|++ .+| +++++|.||-|.-...
T Consensus 104 ~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~--~~g-~~~~~d~vIgADG~~S 158 (391)
T PRK07588 104 DLAAAIYTAIDGQVETIFDDSIATIDEHRDG-VRVTF--ERG-TPRDFDLVIGADGLHS 158 (391)
T ss_pred HHHHHHHHhhhcCeEEEeCCEEeEEEECCCe-EEEEE--CCC-CEEEeCEEEECCCCCc
Confidence 34445544433 479999999999988885 88876 567 4689999999877643
No 107
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=86.72 E-value=2.2 Score=41.63 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=40.1
Q ss_pred ccchhhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEec-CEEEEcCCchH
Q 021616 52 FRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRS-RSVVMTVPSYV 114 (310)
Q Consensus 52 ~~gG~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~a-d~VI~a~p~~~ 114 (310)
..+| ..|++.|.+.+ +.+|+++++|++|..+++.++.|.....+++..+.+ +.||+|+--..
T Consensus 213 ~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 213 AAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred cCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 4556 77888887654 458999999999986544223343333333334556 58999976644
No 108
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=86.70 E-value=26 Score=32.25 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=36.5
Q ss_pred HHHHHHHH---hccceeeCceeeeEEE-cCCCcEEEEEECCCCe-EEEecCEEEEcCCchH
Q 021616 59 LPEAISKR---LGSKVKLSWKLSGVKK-LDSGEYSLTYETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 59 L~~~L~~~---l~~~i~~~~~V~~I~~-~~~~~~~v~~~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
+.+.|.+. .+.+++++++|++|+. ++++ +.|++. .+|+ .++++|.||-|--...
T Consensus 105 l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~~V~~~-~~G~~~~i~ad~vVgADG~~S 163 (392)
T PRK08243 105 VTRDLMAARLAAGGPIRFEASDVALHDFDSDR-PYVTYE-KDGEEHRLDCDFIAGCDGFHG 163 (392)
T ss_pred HHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-eEEEEE-cCCeEEEEEeCEEEECCCCCC
Confidence 44444433 3458999999999987 4553 677763 3553 3689999998876644
No 109
>PRK05868 hypothetical protein; Validated
Probab=86.48 E-value=26 Score=32.08 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=38.3
Q ss_pred HHHHHHHHHh--ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL--GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l--~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.|.+.|.+.+ +.+++++++|+.|+.++++ +.|++ .+| .++++|.||-|--.+.
T Consensus 106 ~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~-v~v~~--~dg-~~~~adlvIgADG~~S 160 (372)
T PRK05868 106 DLVELLYGATQPSVEYLFDDSISTLQDDGDS-VRVTF--ERA-AAREFDLVIGADGLHS 160 (372)
T ss_pred HHHHHHHHhccCCcEEEeCCEEEEEEecCCe-EEEEE--CCC-CeEEeCEEEECCCCCc
Confidence 3445554433 2479999999999887775 88877 566 3789999999876644
No 110
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=85.94 E-value=1.7 Score=39.38 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=29.9
Q ss_pred ceeeCceeeeEEEcCCCcEEEEEEC-C-CCeEEEecCEEEEcCC
Q 021616 70 KVKLSWKLSGVKKLDSGEYSLTYET-P-EGLVSLRSRSVVMTVP 111 (310)
Q Consensus 70 ~i~~~~~V~~I~~~~~~~~~v~~~~-~-~g~~~~~ad~VI~a~p 111 (310)
+|+.+++|++++..++|.|.|++.+ . ++.+++++|+||+||-
T Consensus 295 ~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 295 RLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp EEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---
T ss_pred EEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCC
Confidence 6889999999999985349998854 2 2335789999999984
No 111
>PRK06475 salicylate hydroxylase; Provisional
Probab=85.92 E-value=2.3 Score=39.29 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=40.7
Q ss_pred HHHHHHHHHh----ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 58 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 58 ~L~~~L~~~l----~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
.|-+.|.+.+ +.+++++++|++++.++++ +.|++.+.++.+++++|.||-|--.+..
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-ITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-eEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 4555666554 2379999999999988775 8777643333347899999999777553
No 112
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=85.90 E-value=2.7 Score=39.19 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=40.9
Q ss_pred HHHHHHHH---hccceeeCceeeeEEEcCCCcEEEEEECCCC-eEEEecCEEEEcCCchHHHhccC
Q 021616 59 LPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYETPEG-LVSLRSRSVVMTVPSYVASSLLR 120 (310)
Q Consensus 59 L~~~L~~~---l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g-~~~~~ad~VI~a~p~~~~~~ll~ 120 (310)
|.++|.+. +++++..+++|.++..++++ +.... +.++ +..+.||+||+|+-.+....|+.
T Consensus 265 L~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~-v~~V~-t~~g~~~~l~AD~vVLAaGaw~S~gL~a 328 (419)
T TIGR03378 265 LEEALKHRFEQLGGVMLPGDRVLRAEFEGNR-VTRIH-TRNHRDIPLRADHFVLASGSFFSNGLVA 328 (419)
T ss_pred HHHHHHHHHHHCCCEEEECcEEEEEEeeCCe-EEEEE-ecCCccceEECCEEEEccCCCcCHHHHh
Confidence 44445444 35689999999999988875 54322 2333 24799999999988775555543
No 113
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=85.78 E-value=2.5 Score=41.34 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=37.8
Q ss_pred HHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEec-CEEEEcCCchH
Q 021616 59 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRS-RSVVMTVPSYV 114 (310)
Q Consensus 59 L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~a-d~VI~a~p~~~ 114 (310)
|++.|.+.+ +.+|+++++|++|..+++..+.|.+.+.++...+.+ +.||+|+-...
T Consensus 219 l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 219 LVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 556665543 568999999999987654323354433455335788 99999987643
No 114
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=85.47 E-value=2.9 Score=39.56 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=33.5
Q ss_pred hccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 67 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 67 l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.+.+++++++|++|+.++++ +.+++...++.+++.+|.||+++...
T Consensus 220 ~gV~i~~~~~V~~i~~~~~~-~~v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 220 EGIEVVTSAQVKAVSVRGGG-KIITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred cCCEEEcCcEEEEEEEcCCE-EEEEEEeCCCceEEEeCEEEEeECCC
Confidence 34589999999999887654 66665332333579999999997653
No 115
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=85.18 E-value=2.8 Score=38.92 Aligned_cols=61 Identities=18% Similarity=0.352 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEE-CCCCe-EEEecCEEEEcCCchHH
Q 021616 55 GLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYE-TPEGL-VSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 55 G~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~-~~~g~-~~~~ad~VI~a~p~~~~ 115 (310)
+-..+++.|.+.+ +.+|+++++|++|..+++..+.|.+. ..+|+ ..+.|+.||+|+--...
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 5566778787765 45899999999999987643445554 24453 46889999999877554
No 116
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.79 E-value=3.4 Score=39.06 Aligned_cols=48 Identities=25% Similarity=0.267 Sum_probs=34.0
Q ss_pred HhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 66 RLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 66 ~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
..+.+++++++|++|+..+++ +.+.+...++.+++.+|.||+++....
T Consensus 225 ~~gV~i~~~~~V~~i~~~~~~-v~v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 225 KRGIKIKTGAKAKKVEQTDDG-VTVTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred HcCCEEEeCCEEEEEEEeCCE-EEEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 334689999999999987764 666653211224689999999976643
No 117
>PRK06370 mercuric reductase; Validated
Probab=84.75 E-value=3.5 Score=38.99 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=33.2
Q ss_pred hccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 67 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 67 l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.+.++++++.|.+|+..+++ +.+.+...++..++.+|.||+++...
T Consensus 225 ~GV~i~~~~~V~~i~~~~~~-~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 225 EGIDVRLNAECIRVERDGDG-IAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred CCCEEEeCCEEEEEEEcCCE-EEEEEEeCCCceEEEeCEEEECcCCC
Confidence 34589999999999887664 55554322333579999999998654
No 118
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=84.67 E-value=4 Score=38.61 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=40.5
Q ss_pred ccchhhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCC-eEEEecCEEEEcCCc
Q 021616 52 FRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEG-LVSLRSRSVVMTVPS 112 (310)
Q Consensus 52 ~~gG~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g-~~~~~ad~VI~a~p~ 112 (310)
+.+|-..+++.|.+.+ +.+|+++++|++|..+++..+.|.+...+| ...+.++.||+|+-.
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 3344456777776554 458999999999988655323344422333 246899999999864
No 119
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=83.52 E-value=4 Score=38.33 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=41.0
Q ss_pred eeeeccchhhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEc
Q 021616 48 TVGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMT 109 (310)
Q Consensus 48 ~~~~~~gG~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a 109 (310)
.+.++.-|.+.|++++.+.. |+...+|++|.+|..+++| ..+.+. .+| +++.++.||..
T Consensus 223 PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g-~~~gV~-s~g-e~v~~k~vI~d 284 (438)
T PF00996_consen 223 PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDG-KVIGVK-SEG-EVVKAKKVIGD 284 (438)
T ss_dssp SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTT-EEEEEE-ETT-EEEEESEEEEE
T ss_pred CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCC-eEEEEe-cCC-EEEEcCEEEEC
Confidence 34566678999999887653 4689999999999997665 444442 366 58999999964
No 120
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=83.20 E-value=4.1 Score=37.37 Aligned_cols=43 Identities=28% Similarity=0.413 Sum_probs=33.7
Q ss_pred HhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 66 RLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 66 ~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
..+.+++++++|++|...+++ +.|.+ .+| +++.+|.||+++..
T Consensus 195 ~~gV~i~~~~~v~~i~~~~~~-~~v~~--~~g-~~i~~D~vI~a~G~ 237 (377)
T PRK04965 195 EMGVHLLLKSQLQGLEKTDSG-IRATL--DSG-RSIEVDAVIAAAGL 237 (377)
T ss_pred hCCCEEEECCeEEEEEccCCE-EEEEE--cCC-cEEECCEEEECcCC
Confidence 344589999999999887664 66665 567 47999999999765
No 121
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=82.39 E-value=4 Score=28.12 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=27.4
Q ss_pred chhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEE
Q 021616 54 KGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTY 92 (310)
Q Consensus 54 gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~ 92 (310)
.-+...+....+..+.++++|+.|.+|+.++++ ++|++
T Consensus 40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~V~~ 77 (80)
T PF00070_consen 40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VEVTL 77 (80)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EEEEE
Confidence 334444444444446699999999999999997 77776
No 122
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=82.39 E-value=55 Score=32.51 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=33.1
Q ss_pred ceeeCceeeeEEEcCCC--cEEEEEECC----CCe-EEEecCEEEEcCCchHH
Q 021616 70 KVKLSWKLSGVKKLDSG--EYSLTYETP----EGL-VSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 70 ~i~~~~~V~~I~~~~~~--~~~v~~~~~----~g~-~~~~ad~VI~a~p~~~~ 115 (310)
.++.+++|++++.++++ .+.|++.+. +|+ ++++||+||-|--....
T Consensus 159 ~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 159 EPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred EEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH
Confidence 57889999999877421 377777532 342 57999999999777543
No 123
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=82.21 E-value=4.3 Score=35.44 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=37.0
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.+.+.+.+.+ +.++++ +.|++|+..++. +.|+. .+| .++.+|+||+|+-..
T Consensus 58 ~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~-~~v~~--~~~-~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 58 ELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRP-FKVKT--GDG-KEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHHcCCeEEE-EEEEEEEecCCe-eEEEe--CCC-CEEEeCEEEECCCCC
Confidence 4445554433 457888 899999987774 77775 455 479999999998763
No 124
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=82.01 E-value=3.1 Score=37.78 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=36.1
Q ss_pred HHHHHHHHHhccceeeCceeeeEEEcCCC---cEEEEEECCCC-eEEEecCEEEEcCC
Q 021616 58 MLPEAISKRLGSKVKLSWKLSGVKKLDSG---EYSLTYETPEG-LVSLRSRSVVMTVP 111 (310)
Q Consensus 58 ~L~~~L~~~l~~~i~~~~~V~~I~~~~~~---~~~v~~~~~~g-~~~~~ad~VI~a~p 111 (310)
.-.+-.++++...++.+++|++|+...++ .|.|++.+.+| .+++.|+.||+++-
T Consensus 99 dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 99 DYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATG 156 (341)
T ss_dssp HHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE---
T ss_pred HHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcC
Confidence 33344445555469999999999988753 37887743444 35799999999876
No 125
>PRK08163 salicylate hydroxylase; Provisional
Probab=81.63 E-value=4.1 Score=37.48 Aligned_cols=52 Identities=8% Similarity=0.095 Sum_probs=38.0
Q ss_pred HHHHHHHHh---c-cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 59 LPEAISKRL---G-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 59 L~~~L~~~l---~-~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
|.+.|.+.+ + .+++++++|++|+.++++ +.|++ .+| +++.+|.||.|.-...
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v~v~~--~~g-~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-VTVFD--QQG-NRWTGDALIGCDGVKS 166 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-eEEEE--cCC-CEEecCEEEECCCcCh
Confidence 444555443 2 479999999999987775 77775 566 4789999999976644
No 126
>PRK11445 putative oxidoreductase; Provisional
Probab=81.38 E-value=41 Score=30.41 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=34.3
Q ss_pred cceeeCceeeeEEEcCCCcEEEEEECCCCe-EEEecCEEEEcCCchH
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.+++.++.|++|+..+++ +.|++. .+|+ .++.+|.||.|.-...
T Consensus 113 v~v~~~~~v~~i~~~~~~-~~v~~~-~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 113 VEVYHNSLCRKIWREDDG-YHVIFR-ADGWEQHITARYLVGADGANS 157 (351)
T ss_pred CEEEcCCEEEEEEEcCCE-EEEEEe-cCCcEEEEEeCEEEECCCCCc
Confidence 479999999999988886 888763 3453 3689999999987743
No 127
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=81.17 E-value=2 Score=39.50 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=30.2
Q ss_pred hcCCCCeEEeecc------cCCCchhHHHHHHHHHHHHHHHHh
Q 021616 268 DNGYQGLFLGGNY------VAGVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 268 ~~~~~~l~~aG~~------~~g~gv~~ai~sG~~aA~~i~~~l 304 (310)
+...|||||||+- +.|.++.-|+.||+.|+..+...|
T Consensus 333 Sk~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 333 LKARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred cccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3356999999995 457789999999999998886654
No 128
>PRK06116 glutathione reductase; Validated
Probab=81.01 E-value=5.2 Score=37.71 Aligned_cols=42 Identities=19% Similarity=0.312 Sum_probs=31.9
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
+.+++++++|.+|+..+++.+.+.+ .+| +++.+|.||+++-.
T Consensus 222 GV~i~~~~~V~~i~~~~~g~~~v~~--~~g-~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 222 GIRLHTNAVPKAVEKNADGSLTLTL--EDG-ETLTVDCLIWAIGR 263 (450)
T ss_pred CcEEECCCEEEEEEEcCCceEEEEE--cCC-cEEEeCEEEEeeCC
Confidence 4589999999999876554355554 466 47899999999754
No 129
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=80.85 E-value=6.6 Score=37.22 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=32.2
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCe-EEEecCEEEEcCCc
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPS 112 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~-~~~~ad~VI~a~p~ 112 (310)
+.+|+++++|++|+..+++ +.+.+...+|+ +++.+|.||+++-.
T Consensus 227 gV~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 227 GVKILTGTKVESIDDNGSK-VTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred CCEEEECCEEEEEEEeCCe-EEEEEEecCCCeEEEEeCEEEECcCc
Confidence 4589999999999876653 66655323453 36899999999765
No 130
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=80.79 E-value=1.8 Score=39.66 Aligned_cols=35 Identities=17% Similarity=0.436 Sum_probs=29.1
Q ss_pred CCCCeEEeec------ccCCCchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGN------YVAGVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~------~~~g~gv~~ai~sG~~aA~~i~~~l 304 (310)
..|||||||+ |+.|..+-.|+.||+.|++-+.+.+
T Consensus 367 ~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 367 KVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred cCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 5699999998 3557778999999999999887654
No 131
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=80.22 E-value=5.2 Score=39.75 Aligned_cols=54 Identities=7% Similarity=0.138 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhcc-ceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 57 TMLPEAISKRLGS-KVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 57 ~~L~~~L~~~l~~-~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
..|.+.|.+.++. .++.+++|++|+..+++ +.|++ .+| .++.+|.||.|--...
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~-VtV~~--~dG-~ti~aDlVVGADG~~S 248 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFEDSGDK-VTVVL--ENG-QRYEGDLLVGADGIWS 248 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEEeCCE-EEEEE--CCC-CEEEcCEEEECCCCCc
Confidence 3577888888765 47889999999988775 77776 566 4789999999977644
No 132
>PRK07121 hypothetical protein; Validated
Probab=80.10 E-value=7.4 Score=37.17 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHh---ccceeeCceeeeEEEcCCC-cEEEEEECCCCeEEEec-CEEEEcCCchH
Q 021616 56 LTMLPEAISKRL---GSKVKLSWKLSGVKKLDSG-EYSLTYETPEGLVSLRS-RSVVMTVPSYV 114 (310)
Q Consensus 56 ~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~-~~~v~~~~~~g~~~~~a-d~VI~a~p~~~ 114 (310)
-..+++.|.+.+ +.+|+++++|++|..+++| .+.|.+...++...+.+ +.||+|+-...
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 345777776654 3589999999999887543 23454433233345788 99999987643
No 133
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=79.59 E-value=5.2 Score=37.58 Aligned_cols=51 Identities=6% Similarity=0.019 Sum_probs=34.0
Q ss_pred HHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 62 AISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 62 ~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.+.++.+.+++++++|.+|+..++. +.+.....++..++.||++|+||-..
T Consensus 66 ~~~~~~~i~v~~~~~V~~Id~~~~~-v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 66 KFYDRKQITVKTYHEVIAINDERQT-VTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred HHHHhCCCEEEeCCEEEEEECCCCE-EEEEECCCCcEEeeecCEEEECCCCC
Confidence 4444444578899999999988773 66553111122246899999998664
No 134
>PLN02507 glutathione reductase
Probab=79.33 E-value=6.7 Score=37.63 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=33.2
Q ss_pred hccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 67 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 67 l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.+.++++++.|++|+..+++ +.+.. .+| +++.+|.||+++...
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~-~~v~~--~~g-~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGG-IKVIT--DHG-EEFVADVVLFATGRA 299 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCe-EEEEE--CCC-cEEEcCEEEEeecCC
Confidence 34589999999999876664 66654 466 479999999997654
No 135
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=79.19 E-value=6.6 Score=37.01 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=33.1
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
+.++++++.|++|+..+++ +.+.+ .+| +++.+|.||+++...
T Consensus 221 gV~i~~~~~v~~i~~~~~~-~~v~~--~~g-~~i~~D~viva~G~~ 262 (446)
T TIGR01424 221 GIRIHPQTSLTSITKTDDG-LKVTL--SHG-EEIVADVVLFATGRS 262 (446)
T ss_pred CCEEEeCCEEEEEEEcCCe-EEEEE--cCC-cEeecCEEEEeeCCC
Confidence 4589999999999877665 66665 456 479999999997753
No 136
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=79.11 E-value=7.7 Score=36.90 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=33.3
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCe-EEEecCEEEEcCCch
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSY 113 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~-~~~~ad~VI~a~p~~ 113 (310)
+.+|++++.|++|+..+++ +.+.+.+.+|+ +.+.+|.||+++...
T Consensus 238 gi~i~~~~~v~~i~~~~~~-v~v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 238 GLDIHLGVKIGEIKTGGKG-VSVAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred CcEEEeCcEEEEEEEcCCE-EEEEEEeCCCceeEEEcCEEEEccCCc
Confidence 3589999999999987764 66665333343 468999999997654
No 137
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=78.95 E-value=7 Score=38.20 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=38.2
Q ss_pred hHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecC-EEEEcCCchH
Q 021616 57 TMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSR-SVVMTVPSYV 114 (310)
Q Consensus 57 ~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad-~VI~a~p~~~ 114 (310)
..|++.|.+.+ +.+|+++++|++|..+++..+.|.+.+.++...+.++ .||+|+-...
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 44666665543 4589999999999987653223555334453357786 7999977643
No 138
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=78.74 E-value=6.3 Score=37.41 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=32.6
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
+.+++++++|++|+..+++ +.+.+ .+| +++++|.||+++...
T Consensus 232 gV~i~~~~~v~~v~~~~~~-~~v~~--~~g-~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDG-VVVTL--TDG-RTVEGSHALMAVGSV 273 (466)
T ss_pred CcEEEcCCEEEEEEEeCCE-EEEEE--CCC-cEEEecEEEEeecCC
Confidence 4589999999999877665 66665 456 479999999996653
No 139
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=78.41 E-value=5.1 Score=36.41 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=33.6
Q ss_pred HHHHHHHHHh----ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l----~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.++..|++.+ +.+|+.+++|++|+.. .|.+ ++| .+.||+||+|+-+..
T Consensus 146 ~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~-----~v~t--~~g--~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 146 EAIPALAAYLAEQHGVEFHWNTAVTSVETG-----TVRT--SRG--DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCeEEEEecC-----eEEe--CCC--cEEeCEEEECCCCCh
Confidence 3555555432 5689999999999642 3443 566 468999999998854
No 140
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=78.19 E-value=7.6 Score=36.63 Aligned_cols=44 Identities=23% Similarity=0.230 Sum_probs=32.8
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCe-EEEecCEEEEcCCchH
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
+.++++++.|++|+..+++ +.+.. .+|. +++.+|.||+++....
T Consensus 225 gi~i~~~~~v~~i~~~~~~-v~v~~--~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 225 GVKILTNTKVTAVEKNDDQ-VVYEN--KGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred CCEEEeCCEEEEEEEeCCE-EEEEE--eCCcEEEEEeCEEEEecCCcc
Confidence 4589999999999887764 66654 3442 4689999999986543
No 141
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=78.01 E-value=2.2 Score=37.49 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=35.5
Q ss_pred ceeeCceeeeEEEc--CCCcEEEEEECCCCe---EEEecCEEEEcCCchHHHhcc
Q 021616 70 KVKLSWKLSGVKKL--DSGEYSLTYETPEGL---VSLRSRSVVMTVPSYVASSLL 119 (310)
Q Consensus 70 ~i~~~~~V~~I~~~--~~~~~~v~~~~~~g~---~~~~ad~VI~a~p~~~~~~ll 119 (310)
+|++++.|++|..+ ++....|.+.+.++. ..+.++.||++.-+-...+||
T Consensus 209 ~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LL 263 (296)
T PF00732_consen 209 TLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLL 263 (296)
T ss_dssp EEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHH
T ss_pred cEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhh
Confidence 89999999999765 332345666555554 457889999999887776664
No 142
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=77.90 E-value=7 Score=37.61 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=34.8
Q ss_pred HHHHHHHHh----ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecC-EEEEcCCch
Q 021616 59 LPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSR-SVVMTVPSY 113 (310)
Q Consensus 59 L~~~L~~~l----~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad-~VI~a~p~~ 113 (310)
|+..|.+.+ +.+|+++++|++|..+++....|.....++...+.|+ .||+|+-..
T Consensus 175 l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~ 234 (513)
T PRK12837 175 LIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGF 234 (513)
T ss_pred HHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCc
Confidence 555554432 4589999999999876543233444322333457886 799998764
No 143
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=77.86 E-value=8.5 Score=36.32 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=32.8
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
+.++++++.|++|+.++++.+.+.+ .+|++.+.+|.||+++....
T Consensus 221 gI~i~~~~~v~~i~~~~~~~~~v~~--~~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 221 GINVHKLSKPVKVEKTVEGKLVIHF--EDGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred CCEEEcCCEEEEEEEeCCceEEEEE--CCCcEEEEcCEEEEeeCCCc
Confidence 4589999999999876543255555 35534689999999987643
No 144
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=77.56 E-value=7 Score=37.33 Aligned_cols=57 Identities=7% Similarity=-0.056 Sum_probs=37.9
Q ss_pred HHHHHHHHHh----ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l----~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.|.+.|.+.+ +.+|+.++.|++|..+++....|...+.++...+.++.||+|+-...
T Consensus 129 ~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 129 EVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4556666554 34899999999998765532224443333324689999999988754
No 145
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=76.98 E-value=10 Score=35.54 Aligned_cols=56 Identities=7% Similarity=0.109 Sum_probs=37.1
Q ss_pred chhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 54 KGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 54 gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.-+.......++..+.+|+.+++|++|..++++ +.+.. .+| .++.||.||.|.-..
T Consensus 108 ~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~-v~~v~--~~g-~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 108 SKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGK-VVGVE--ADG-DVIEAKTVILADGVN 163 (428)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCE-EEEEE--cCC-cEEECCEEEEEeCCC
Confidence 334443333344456789999999999877664 43322 345 368999999998653
No 146
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=76.94 E-value=8.2 Score=37.09 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=36.8
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCe-EEEecCEEEEcCCc
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPS 112 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~-~~~~ad~VI~a~p~ 112 (310)
.+++.|.+.+ +.+|+++++|++|..+++..+.|.+...+|+ .++.+|.||+|+-.
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG 249 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGG 249 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCC
Confidence 4666665544 4589999999999876553223444333432 36899999999863
No 147
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=76.45 E-value=8.2 Score=36.43 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=33.2
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
+.++++++.|++|+..+++ +.+++ .+| +++++|.||+++....
T Consensus 230 gI~v~~~~~v~~i~~~~~~-~~v~~--~~g-~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 230 GVTIRHNEEVEKVEGGDDG-VIVHL--KSG-KKIKADCLLYANGRTG 272 (461)
T ss_pred CCEEEECCEEEEEEEeCCe-EEEEE--CCC-CEEEeCEEEEeecCCc
Confidence 4589999999999877664 66665 456 4799999999987643
No 148
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=76.39 E-value=63 Score=29.66 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=28.7
Q ss_pred CCeEEeeccc------CCCchhHHHHHHHHHHHHHHHHhh
Q 021616 272 QGLFLGGNYV------AGVALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 272 ~~l~~aG~~~------~g~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
+++.++||.. .|-|+.-|+.||..+|+.|.+.+.
T Consensus 264 ~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~ 303 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQ 303 (388)
T ss_pred CCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 6899999973 367899999999999999987653
No 149
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=76.15 E-value=8.1 Score=37.18 Aligned_cols=52 Identities=13% Similarity=0.203 Sum_probs=38.8
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.+.+.|.+.+ +.+++++++|++|+..+++ +.+++ .+| ..+.+|+||+|+-..
T Consensus 268 ~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~-~~v~~--~~g-~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 268 QLAANLEEHIKQYPIDLMENQRAKKIETEDGL-IVVTL--ESG-EVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHhCCeEEcCCEEEEEEecCCe-EEEEE--CCC-CEEEeCEEEECCCCC
Confidence 3555555443 3589999999999987764 77775 466 479999999999874
No 150
>PRK07512 L-aspartate oxidase; Provisional
Probab=75.71 E-value=6.3 Score=37.96 Aligned_cols=57 Identities=18% Similarity=0.090 Sum_probs=37.2
Q ss_pred HHHHHHHHHh----ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l----~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.+++.|.+.+ +.+|+.++.|++|..+++..+.+...+.++...+.|+.||+|+-...
T Consensus 137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 137 AIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 4666665554 34899999999997665422234432233323689999999987753
No 151
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=75.12 E-value=9.2 Score=36.17 Aligned_cols=43 Identities=30% Similarity=0.474 Sum_probs=32.9
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
+.+++++++|++++..+++ +.+++++.++ .++++|.|++|+-=
T Consensus 228 gv~i~~~~~v~~~~~~~~~-v~v~~~~g~~-~~~~ad~vLvAiGR 270 (454)
T COG1249 228 GVKILLNTKVTAVEKKDDG-VLVTLEDGEG-GTIEADAVLVAIGR 270 (454)
T ss_pred CeEEEccceEEEEEecCCe-EEEEEecCCC-CEEEeeEEEEccCC
Confidence 3589999999999998886 7777743222 16889999999644
No 152
>PRK13984 putative oxidoreductase; Provisional
Probab=74.62 E-value=4 Score=40.13 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=32.0
Q ss_pred CCCCeEEeecccCCCchhHHHHHHHHHHHHHHHHhhh
Q 021616 270 GYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~~~l~~ 306 (310)
..++||.+||-..+..+-.|+..|+.||..|.+.|..
T Consensus 567 s~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 567 SIPWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred CCCCEEEecCcCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 4689999999987777778999999999999988754
No 153
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=74.59 E-value=8.4 Score=37.06 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=39.1
Q ss_pred hHHHHHHHHH---hccceeeCceeeeEEEcCCCcEEEEEE-CCCC-eEEEecCEEEEcCCchH
Q 021616 57 TMLPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYE-TPEG-LVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 57 ~~L~~~L~~~---l~~~i~~~~~V~~I~~~~~~~~~v~~~-~~~g-~~~~~ad~VI~a~p~~~ 114 (310)
..|+.+++.. .+++|.++++|++|...+++.+.|++. +.+| ...+.++.||.|+-++.
T Consensus 128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 128 FRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 3455555444 356899999999999876642345542 2233 23689999999998754
No 154
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=74.52 E-value=10 Score=34.98 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=31.6
Q ss_pred hccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 67 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 67 l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.+.++++++.|++|+. ++. +.+.+ .+| +++.+|.||+++...
T Consensus 199 ~GV~i~~~~~V~~i~~-~~~-~~v~l--~~g-~~i~aD~Vv~a~G~~ 240 (396)
T PRK09754 199 AGVRILLNNAIEHVVD-GEK-VELTL--QSG-ETLQADVVIYGIGIS 240 (396)
T ss_pred CCCEEEeCCeeEEEEc-CCE-EEEEE--CCC-CEEECCEEEECCCCC
Confidence 3468999999999976 332 55554 567 479999999998764
No 155
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=74.40 E-value=11 Score=36.71 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=35.2
Q ss_pred HHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecC-EEEEcCCch
Q 021616 59 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSR-SVVMTVPSY 113 (310)
Q Consensus 59 L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad-~VI~a~p~~ 113 (310)
+...|.+.+ +.+|+++++|++|..+++..+.|.+...++...+.++ .||+|+-..
T Consensus 210 ~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~ 268 (557)
T PRK07843 210 LAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGF 268 (557)
T ss_pred HHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCc
Confidence 555555444 3589999999999876553233444323333457886 699987653
No 156
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=74.29 E-value=12 Score=36.34 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHh---ccceeeCceeeeEEEc-CC--Cc-EEEEEECCCCeE---EEecCEEEEcCCc
Q 021616 56 LTMLPEAISKRL---GSKVKLSWKLSGVKKL-DS--GE-YSLTYETPEGLV---SLRSRSVVMTVPS 112 (310)
Q Consensus 56 ~~~L~~~L~~~l---~~~i~~~~~V~~I~~~-~~--~~-~~v~~~~~~g~~---~~~ad~VI~a~p~ 112 (310)
..+|+..|.+.| +++|++|++|++|..+ ++ ++ ..|.+...+.++ ....|.||+|+-.
T Consensus 225 yeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs 291 (576)
T PRK13977 225 YESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGS 291 (576)
T ss_pred hhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCc
Confidence 467777777666 4699999999999985 22 22 234442212212 3578999998544
No 157
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=74.26 E-value=10 Score=38.97 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=39.8
Q ss_pred cchhhHHHHHHHHHhccceeeCceeeeEEEcCCC-cEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 53 RKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSG-EYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 53 ~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~-~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
...++.++....+..+.+|++++.|++|..++.+ ...|.+ .+| +++.+|.||+++....
T Consensus 186 d~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~--~dG-~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 186 DQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRF--ADG-SELEVDFIVFSTGIRP 245 (847)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEE--CCC-CEEEcCEEEECCCccc
Confidence 3344444444445556799999999999865422 234554 577 4799999999987643
No 158
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=74.10 E-value=13 Score=33.11 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=37.1
Q ss_pred HHHHHHHH---hccceeeCceeeeEEEcCCCcEEEEEEC-CCCe-EEEecCEEEEcCCchH
Q 021616 59 LPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYET-PEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 59 L~~~L~~~---l~~~i~~~~~V~~I~~~~~~~~~v~~~~-~~g~-~~~~ad~VI~a~p~~~ 114 (310)
|-+.|.+. .+.+|+.+++|..++.+.++ +.+.+.. .+|. ++++||.||-|--...
T Consensus 113 l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~-~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 113 LDRALREEAEERGVDIRFGTRVVSIEQDDDG-VTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp HHHHHHHHHHHHTEEEEESEEEEEEEEETTE-EEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred HHHhhhhhhhhhhhhheeeeecccccccccc-cccccccccCCceeEEEEeeeecccCccc
Confidence 44455544 34589999999999988886 5555432 3453 3789999999976644
No 159
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=74.00 E-value=10 Score=36.90 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=36.2
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecC-EEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSR-SVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad-~VI~a~p~~~ 114 (310)
.|+..|.+.+ +.+|+++++|++|..+++.++.|.+...++...+.++ .||+|+-...
T Consensus 209 ~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 209 ALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 3555555443 4589999999999987553334444322322357785 7999976643
No 160
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=73.90 E-value=9.7 Score=36.18 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=33.0
Q ss_pred cceeeCceeeeEEEcCCCcEEEEEECCCC-eEEEecCEEEEcCCchH
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTYETPEG-LVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~~~~~g-~~~~~ad~VI~a~p~~~ 114 (310)
.++++++.|++|+..+++ +.+++...+| .+++++|.||+++....
T Consensus 229 v~i~~~~~v~~i~~~~~~-~~v~~~~~~~~~~~i~~D~vi~a~G~~p 274 (471)
T PRK06467 229 FNIMLETKVTAVEAKEDG-IYVTMEGKKAPAEPQRYDAVLVAVGRVP 274 (471)
T ss_pred eEEEcCCEEEEEEEcCCE-EEEEEEeCCCcceEEEeCEEEEeecccc
Confidence 479999999999877764 6666532223 24699999999987643
No 161
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=73.84 E-value=4.7 Score=34.97 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=29.0
Q ss_pred CCCCeEEeeccc---C-----CCchhHHHHHHHHHHHHHHHHhhh
Q 021616 270 GYQGLFLGGNYV---A-----GVALGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 270 ~~~~l~~aG~~~---~-----g~gv~~ai~sG~~aA~~i~~~l~~ 306 (310)
-+||||+||... + |+-..+=+.||++||+.|++.|..
T Consensus 212 ~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 212 VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 359999999863 2 333456789999999999998864
No 162
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=73.54 E-value=11 Score=35.25 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=30.9
Q ss_pred HhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 66 RLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 66 ~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
..+.+++++++|++|+..+++ +.+.. +| +++.+|.||+++-.
T Consensus 210 ~~GI~i~~~~~V~~i~~~~~~-v~v~~---~g-~~i~~D~viva~G~ 251 (438)
T PRK07251 210 EDGITFLLNAHTTEVKNDGDQ-VLVVT---ED-ETYRFDALLYATGR 251 (438)
T ss_pred HcCCEEEcCCEEEEEEecCCE-EEEEE---CC-eEEEcCEEEEeeCC
Confidence 335589999999999876553 55542 45 37999999998654
No 163
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=73.28 E-value=11 Score=36.87 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=36.3
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCe-EEEec-CEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRS-RSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~-~~~~a-d~VI~a~p~~~ 114 (310)
.|+..|.+.+ +.+|+++++|++|..+++....|.+. .+|. ..+.+ +.||+|+-...
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~-~~g~~~~i~A~~~VVlAtGg~~ 282 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVV-QGGVRRRIRARGGVVLATGGFN 282 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEe-cCCeEEEEEccceEEECCCCcc
Confidence 4666666554 45899999999998765532334443 2442 34676 68999976644
No 164
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=73.10 E-value=15 Score=34.33 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=37.6
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCC-cEEEEEECCCCe-EEEecCEEEEcCCch
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSG-EYSLTYETPEGL-VSLRSRSVVMTVPSY 113 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~-~~~v~~~~~~g~-~~~~ad~VI~a~p~~ 113 (310)
.+.+.|.+.+ +.+|+++++|++|..++++ .+.|.+.+.+|+ ..+.+|.||+|+-..
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~ 191 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGF 191 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence 4666665554 4589999999999987543 233444334553 247899999997653
No 165
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=73.10 E-value=12 Score=36.02 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=39.2
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.|.+.|.+.+ +.+++++++|.+|...++. +.|.+ .+| ..+.+|.||+|+-..
T Consensus 267 ~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~-~~V~~--~~g-~~i~a~~vViAtG~~ 321 (517)
T PRK15317 267 KLAAALEEHVKEYDVDIMNLQRASKLEPAAGL-IEVEL--ANG-AVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCe-EEEEE--CCC-CEEEcCEEEECCCCC
Confidence 4556665544 3578899999999987764 77775 456 368999999998874
No 166
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=72.85 E-value=15 Score=36.09 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=36.7
Q ss_pred HHHHHHHHH---hccceeeCceeeeEEEcCCCcE-EEEEECCCCeEEEecC-EEEEcCCchH
Q 021616 58 MLPEAISKR---LGSKVKLSWKLSGVKKLDSGEY-SLTYETPEGLVSLRSR-SVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~---l~~~i~~~~~V~~I~~~~~~~~-~v~~~~~~g~~~~~ad-~VI~a~p~~~ 114 (310)
.|+..|.+. .+.+|+++++|++|..+++|++ .|.+...++...+.++ .||+|+-...
T Consensus 214 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 214 SLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 344444433 3458999999999998754433 4544433333457887 6999987644
No 167
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=72.05 E-value=90 Score=29.51 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=29.1
Q ss_pred CCeEEeecc------cCCCchhHHHHHHHHHHHHHHHHhh
Q 021616 272 QGLFLGGNY------VAGVALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 272 ~~l~~aG~~------~~g~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
+++.++||. +.|-|+.-|+.||+.||+.|.+.+.
T Consensus 309 ~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~ 348 (450)
T PLN00093 309 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSE 348 (450)
T ss_pred CCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHh
Confidence 689999997 3477899999999999999987653
No 168
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=71.99 E-value=16 Score=34.68 Aligned_cols=45 Identities=31% Similarity=0.410 Sum_probs=32.4
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEEC-CCC-eEEEecCEEEEcCCch
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYET-PEG-LVSLRSRSVVMTVPSY 113 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~-~~g-~~~~~ad~VI~a~p~~ 113 (310)
+.++++++.|++|+..+++ +.+++.. .+| .+.+++|.||+++...
T Consensus 229 gV~i~~~~~V~~i~~~~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 229 GMKFKLGSKVTGATAGADG-VSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred CCEEEECcEEEEEEEcCCe-EEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 3589999999999876665 6655431 122 2468999999998654
No 169
>PRK14727 putative mercuric reductase; Provisional
Probab=71.52 E-value=14 Score=35.28 Aligned_cols=43 Identities=26% Similarity=0.321 Sum_probs=32.6
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
+.+++++++|++|+..+++ +.+.. .+| ++.+|.||+++....-
T Consensus 242 GV~i~~~~~V~~i~~~~~~-~~v~~--~~g--~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 242 GIEVLNNTQASLVEHDDNG-FVLTT--GHG--ELRAEKLLISTGRHAN 284 (479)
T ss_pred CCEEEcCcEEEEEEEeCCE-EEEEE--cCC--eEEeCEEEEccCCCCC
Confidence 4589999999999877664 66653 455 5889999999877543
No 170
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=71.26 E-value=5.6 Score=34.45 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=27.9
Q ss_pred CCCCeEEeeccc---C-----CCchhHHHHHHHHHHHHHHHHhh
Q 021616 270 GYQGLFLGGNYV---A-----GVALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 270 ~~~~l~~aG~~~---~-----g~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
-+||||+||... + |+-..+=+.||++||+.|++.|.
T Consensus 211 ~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 211 VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 469999999873 2 33345678999999999998763
No 171
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=71.25 E-value=11 Score=35.14 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=32.7
Q ss_pred HHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEe--cCEEEEcCCc
Q 021616 63 ISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLR--SRSVVMTVPS 112 (310)
Q Consensus 63 L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~--ad~VI~a~p~ 112 (310)
+.+..+.++++++.|++|+..++. +.+.. ..++ +++. ||+||+||-.
T Consensus 53 ~~~~~gv~~~~~~~V~~id~~~~~-v~~~~-~~~~-~~~~~~yd~lIiATG~ 101 (427)
T TIGR03385 53 FIKKRGIDVKTNHEVIEVNDERQT-VVVRN-NKTN-ETYEESYDYLILSPGA 101 (427)
T ss_pred HHHhcCCeEEecCEEEEEECCCCE-EEEEE-CCCC-CEEecCCCEEEECCCC
Confidence 434445578899999999977663 55543 1223 3567 9999999876
No 172
>PRK07846 mycothione reductase; Reviewed
Probab=71.12 E-value=13 Score=35.22 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=33.1
Q ss_pred cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
.+++++++|++|+..+++ +.+.+ .+| +++++|.||+++....-
T Consensus 221 v~i~~~~~v~~i~~~~~~-v~v~~--~~g-~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 221 WDVRLGRNVVGVSQDGSG-VTLRL--DDG-STVEADVLLVATGRVPN 263 (451)
T ss_pred eEEEeCCEEEEEEEcCCE-EEEEE--CCC-cEeecCEEEEEECCccC
Confidence 479999999999877664 66665 456 47999999999876443
No 173
>PRK14694 putative mercuric reductase; Provisional
Probab=71.08 E-value=14 Score=34.97 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=31.1
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
+.++++++.|++|+.+++. +.+.. .++ ++.+|.||+++....
T Consensus 232 GI~v~~~~~v~~i~~~~~~-~~v~~--~~~--~i~~D~vi~a~G~~p 273 (468)
T PRK14694 232 GIEVLKQTQASEVDYNGRE-FILET--NAG--TLRAEQLLVATGRTP 273 (468)
T ss_pred CCEEEeCCEEEEEEEcCCE-EEEEE--CCC--EEEeCEEEEccCCCC
Confidence 4589999999999876653 55543 344 599999999976543
No 174
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=70.98 E-value=14 Score=34.84 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=33.3
Q ss_pred cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
.++++++.|++|+..+++ +.+++ .+| +++++|.||+++....-
T Consensus 224 I~i~~~~~V~~i~~~~~~-v~v~~--~~g-~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 224 WDIRLGRNVTAVEQDGDG-VTLTL--DDG-STVTADVLLVATGRVPN 266 (452)
T ss_pred CEEEeCCEEEEEEEcCCe-EEEEE--cCC-CEEEcCEEEEeeccCcC
Confidence 479999999999987665 66665 456 47999999999876443
No 175
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=70.58 E-value=6.3 Score=39.11 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=32.6
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHHhhhcc
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQYA 308 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~l~~~~ 308 (310)
..++||.+||-..|.. +..|+..|+.||..|...|...+
T Consensus 599 s~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~~~ 638 (639)
T PRK12809 599 HLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDTKA 638 (639)
T ss_pred CCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4589999999877665 58899999999999998886543
No 176
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=70.54 E-value=13 Score=37.84 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 55 GLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 55 G~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.++.++....+..+.+|++++.|++|...+. ...|.+ .+| +++.+|.||+++...
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~-~~~v~~--~dG-~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVGATK-ADRIRF--KDG-SSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEcCCc-eEEEEE--CCC-CEEEcCEEEECCCCC
Confidence 3444444444445668999999999976543 245665 567 479999999998763
No 177
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=70.45 E-value=16 Score=34.88 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=32.0
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
+.+|++++.+.+|...+++ +.|++.+.++.+++.+|.||+++...
T Consensus 234 gV~i~~~~~v~~v~~~~~~-~~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 234 GVKFKRQFVPIKVEQIEAK-VKVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred CCEEEeCceEEEEEEcCCe-EEEEEecCCcceEEEeCEEEEEecCC
Confidence 4589999999999876664 66665321112468999999998753
No 178
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=69.84 E-value=18 Score=34.20 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=30.5
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
+.+|++++.|++|+..+.. +.+.. .++.+++.+|.||+++...
T Consensus 225 GI~i~~~~~V~~i~~~~~~-v~~~~--~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 225 GVKIFTGAALKGLNSYKKQ-ALFEY--EGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred CCEEEECCEEEEEEEcCCE-EEEEE--CCceEEEEeCEEEEecCCc
Confidence 4589999999999866553 44442 2222368999999998753
No 179
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=69.75 E-value=15 Score=34.53 Aligned_cols=40 Identities=8% Similarity=0.176 Sum_probs=30.2
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
+.++++++.|++|+.++++ +.+.. .+| ++.+|.||+++-.
T Consensus 213 gV~v~~~~~v~~i~~~~~~-v~v~~--~~g--~i~~D~vl~a~G~ 252 (441)
T PRK08010 213 GVDIILNAHVERISHHENQ-VQVHS--EHA--QLAVDALLIASGR 252 (441)
T ss_pred CCEEEeCCEEEEEEEcCCE-EEEEE--cCC--eEEeCEEEEeecC
Confidence 4589999999999877653 65553 455 4889999999654
No 180
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=68.85 E-value=14 Score=35.46 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=38.8
Q ss_pred HHHHHHHHH---hccceeeCceeeeEEEcCCCcEEEEEEC-CCC-eEEEecCEEEEcCCchH
Q 021616 58 MLPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYET-PEG-LVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~---l~~~i~~~~~V~~I~~~~~~~~~v~~~~-~~g-~~~~~ad~VI~a~p~~~ 114 (310)
.|+..++.. .+.+++.+++|++|..++++ |.|++.+ .+| ..++.++.||.|+-+..
T Consensus 156 rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 156 RLVVLNARDAAERGAEILTRTRVVSARRENGL-WHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 344444333 35689999999999887664 7776532 234 23689999999998854
No 181
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.67 E-value=17 Score=34.33 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHhc--cceeeCceeeeEEEcCCCcEEEEEECCCC-eEEEecCEEEEcCCch
Q 021616 56 LTMLPEAISKRLG--SKVKLSWKLSGVKKLDSGEYSLTYETPEG-LVSLRSRSVVMTVPSY 113 (310)
Q Consensus 56 ~~~L~~~L~~~l~--~~i~~~~~V~~I~~~~~~~~~v~~~~~~g-~~~~~ad~VI~a~p~~ 113 (310)
+-...+..++..+ ..|+.++.|..++...+|.|.|.+.+..+ .+...+|.||+|+-..
T Consensus 92 ~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 92 VLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred HHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 3334444444433 47999999999998883359999854333 2467899999998776
No 182
>PRK12839 hypothetical protein; Provisional
Probab=68.54 E-value=19 Score=35.23 Aligned_cols=57 Identities=18% Similarity=0.354 Sum_probs=36.2
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCC-cEEEEEECCCCeEEE-ecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSG-EYSLTYETPEGLVSL-RSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~-~~~v~~~~~~g~~~~-~ad~VI~a~p~~~ 114 (310)
.|+..|.+.. +.+|+++++|++|..+++| .+.|.+.+.+|...+ .++.||+|+-...
T Consensus 215 ~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 215 ALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 3555555443 4589999999999876433 334544445564333 4589999986543
No 183
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=68.44 E-value=5.5 Score=33.68 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=29.3
Q ss_pred CCCCeEEeeccc---C-----CCchhHHHHHHHHHHHHHHHHhhh
Q 021616 270 GYQGLFLGGNYV---A-----GVALGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 270 ~~~~l~~aG~~~---~-----g~gv~~ai~sG~~aA~~i~~~l~~ 306 (310)
-+||||+||-.. + |+-..+-+.||+.||+.|++.|..
T Consensus 217 V~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 217 VYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred ccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 469999999863 2 343567799999999999998864
No 184
>PTZ00058 glutathione reductase; Provisional
Probab=68.42 E-value=22 Score=34.70 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=30.9
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
+.++++++.|.+|+..+++.+.+.. .++.+++.+|.||+++..
T Consensus 292 GV~i~~~~~V~~I~~~~~~~v~v~~--~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 292 NINIITHANVEEIEKVKEKNLTIYL--SDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred CCEEEeCCEEEEEEecCCCcEEEEE--CCCCEEEECCEEEECcCC
Confidence 4589999999999876542255544 233257999999999765
No 185
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=68.32 E-value=16 Score=35.56 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=38.1
Q ss_pred HHHHHHHHH---hccceeeCceeeeEEEcCCCcEEEEEE-CCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYE-TPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~---l~~~i~~~~~V~~I~~~~~~~~~v~~~-~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|+.+++.. .+++++++++|++|..++++.+.|.+. +.+|+ .++.+|.||.|+-+..
T Consensus 150 rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 150 RLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 355555443 356899999999999877642335442 12332 3689999999998754
No 186
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=68.10 E-value=7.3 Score=36.51 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=29.8
Q ss_pred CCCeEEeeccc--------CCCchhHHHHHHHHHHHHHHHHhhh
Q 021616 271 YQGLFLGGNYV--------AGVALGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 271 ~~~l~~aG~~~--------~g~gv~~ai~sG~~aA~~i~~~l~~ 306 (310)
.+|+.++||.. .|-|+.-|+.||+.||+.|.+.+..
T Consensus 294 ~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~ 337 (428)
T PRK10157 294 GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKS 337 (428)
T ss_pred cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhc
Confidence 37999999973 3567889999999999999887653
No 187
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=67.78 E-value=13 Score=34.51 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=37.3
Q ss_pred ccchhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 52 FRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 52 ~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
+..-++..++...+.++.+|++++.|++|+. ++ |++ .+|++.+.++.||-|+-.
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~---v~~--~~g~~~I~~~tvvWaaGv 260 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTP--DG---VTL--KDGEEEIPADTVVWAAGV 260 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECC--Cc---EEE--ccCCeeEecCEEEEcCCC
Confidence 3344555566666667789999999999964 43 333 345335999999999654
No 188
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=67.67 E-value=17 Score=35.34 Aligned_cols=57 Identities=5% Similarity=-0.013 Sum_probs=38.5
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCC-cEEEEEEC-CCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSG-EYSLTYET-PEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~-~~~v~~~~-~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.+.+.|.+.+ +.+|.+++.|++|..++++ .+.+.... .+|+ ..+.|+.||+||-...
T Consensus 135 ~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 135 EMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 4666666554 3589999999999877654 23333322 4553 3689999999987654
No 189
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=67.57 E-value=14 Score=34.11 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=43.2
Q ss_pred eeeccchhhHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcC
Q 021616 49 VGSFRKGLTMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTV 110 (310)
Q Consensus 49 ~~~~~gG~~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~ 110 (310)
..++..|++.|++.+++.- |++..+|.++.+|....+| ..+.+. +|.+...+..||+-.
T Consensus 224 ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~g-k~igvk--~~~~v~~~k~vi~dp 285 (440)
T KOG1439|consen 224 YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNG-KVIGVK--SGGEVAKCKKVICDP 285 (440)
T ss_pred ceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCc-cEEEEe--cCCceeecceEEecC
Confidence 5788899999999887663 4699999999999996665 555552 332466677666543
No 190
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=67.37 E-value=16 Score=34.51 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=31.2
Q ss_pred ceeeCceeeeEEEcCCC-cEEEEEECCCCeE-EEecCEEEEcCCc
Q 021616 70 KVKLSWKLSGVKKLDSG-EYSLTYETPEGLV-SLRSRSVVMTVPS 112 (310)
Q Consensus 70 ~i~~~~~V~~I~~~~~~-~~~v~~~~~~g~~-~~~ad~VI~a~p~ 112 (310)
.|+.++.|+.+..+.++ .|.|+++ +|.. +++||.||+|+-.
T Consensus 100 ~i~~~~~v~~~~~~~~~~~w~V~~~--~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 100 QIRFNTRVEVADWDEDTKRWTVTTS--DGGTGELTADFVVVATGH 142 (443)
T ss_pred EEEcccceEEEEecCCCCeEEEEEc--CCCeeeEecCEEEEeecC
Confidence 79999999999888653 5999873 3321 2679999999876
No 191
>PRK12831 putative oxidoreductase; Provisional
Probab=67.30 E-value=8.6 Score=36.49 Aligned_cols=37 Identities=27% Similarity=0.519 Sum_probs=30.8
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHHhhh
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~l~~ 306 (310)
..++||.+||-..|.. +-.|+.+|+.||..|.+.|..
T Consensus 425 s~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 425 SKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred CCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 4589999999876653 678999999999999888753
No 192
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=67.26 E-value=19 Score=34.37 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=31.0
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
+.++++++.|++|...+++...+.+ .+| +++.+|.||+++-.
T Consensus 245 GI~i~~~~~v~~i~~~~~~~~~v~~--~~g-~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 245 GINIMTNENPAKVTLNADGSKHVTF--ESG-KTLDVDVVMMAIGR 286 (486)
T ss_pred CCEEEcCCEEEEEEEcCCceEEEEE--cCC-CEEEcCEEEEeeCC
Confidence 3589999999999876554245554 355 37999999998654
No 193
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=67.17 E-value=25 Score=33.40 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=31.3
Q ss_pred hccceeeCceeeeEEEc-CCCcEEEEEECCCCe-EEEecCEEEEcCCchH
Q 021616 67 LGSKVKLSWKLSGVKKL-DSGEYSLTYETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 67 l~~~i~~~~~V~~I~~~-~~~~~~v~~~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.+.++++++.|++|+.. +++ +.+.. ..+|+ +++.+|.||+++....
T Consensus 234 ~gI~i~~~~~v~~i~~~~~~~-~~~~~-~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 234 LGVRVVTGAKVLGLTLKKDGG-VLIVA-EHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred cCCEEEeCcEEEEEEEecCCC-EEEEE-EeCCceEEEEeCEEEEeeCCcc
Confidence 34589999999999862 343 43332 13442 4689999999987644
No 194
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=67.15 E-value=9.6 Score=34.59 Aligned_cols=36 Identities=25% Similarity=0.624 Sum_probs=29.7
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHHhh
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~l~ 305 (310)
..++||.+||-..+.. +..|+.+|+.||..|.+.|.
T Consensus 314 ~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 314 SREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred CCCCEEEEcccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 3589999999866544 67899999999999988874
No 195
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=66.83 E-value=19 Score=33.78 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=30.5
Q ss_pred HHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 65 KRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 65 ~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
+..+.+++++++|++|+.+++ ...+.. .++ ++.+|.||+++...
T Consensus 202 ~~~gI~v~~~~~v~~i~~~~~-~~~v~~--~~~--~i~~d~vi~a~G~~ 245 (444)
T PRK09564 202 RENGVELHLNEFVKSLIGEDK-VEGVVT--DKG--EYEADVVIVATGVK 245 (444)
T ss_pred HHCCCEEEcCCEEEEEecCCc-EEEEEe--CCC--EEEcCEEEECcCCC
Confidence 344558999999999965333 233433 344 68999999998764
No 196
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=66.70 E-value=21 Score=34.65 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=25.8
Q ss_pred CCCCeEEeecccC-------------CCchhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVA-------------GVALGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~-------------g~gv~~ai~sG~~aA~~i~~ 302 (310)
+.+|||.||+-.. |.++..|+.+|+.|++.+.+
T Consensus 503 pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa~ 548 (549)
T PRK12834 503 PLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAAR 548 (549)
T ss_pred EeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHhh
Confidence 5689999988631 34477899999999998754
No 197
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=66.39 E-value=25 Score=32.41 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=33.0
Q ss_pred ceeeCceeeeEEEcCCCcEEEEEECCC-C-eEEEecCEEEEcCCc
Q 021616 70 KVKLSWKLSGVKKLDSGEYSLTYETPE-G-LVSLRSRSVVMTVPS 112 (310)
Q Consensus 70 ~i~~~~~V~~I~~~~~~~~~v~~~~~~-g-~~~~~ad~VI~a~p~ 112 (310)
+++++++|+.+..+.+|.+.++++... | .+++++|.+.+++-=
T Consensus 268 kF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 268 KFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred eeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC
Confidence 799999999999998865777765432 3 257899998877543
No 198
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=66.26 E-value=17 Score=34.81 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=39.1
Q ss_pred HHHHHHHHH---hccceeeCceeeeEEEcCCCcEEEEEECCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~---l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|+..++.. .+.+++.+++|++|..++++ |.|++.+..|+ .++.++.||.|+-+..
T Consensus 156 rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 156 RLVVLNALDAAERGATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHCCCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 344444333 35689999999999988764 77766433232 3589999999999854
No 199
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=66.19 E-value=17 Score=33.27 Aligned_cols=45 Identities=4% Similarity=0.082 Sum_probs=32.4
Q ss_pred HHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 62 AISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 62 ~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.+.+..+.+++++++|++|+..+. .|++ +| ..+.||+||+||-..
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~~~~---~v~~---~~-~~~~yd~LVlATG~~ 110 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDAEAQ---VVKS---QG-NQWQYDKLVLATGAS 110 (377)
T ss_pred HHHHhCCCEEECCCEEEEEECCCC---EEEE---CC-eEEeCCEEEECCCCC
Confidence 344444568889999999987654 3443 34 378999999998864
No 200
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=65.90 E-value=9.3 Score=37.25 Aligned_cols=38 Identities=26% Similarity=0.517 Sum_probs=31.4
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHHhhhc
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQY 307 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~l~~~ 307 (310)
..++||.+||...|.. +-.|+..|+.||..|.+.|...
T Consensus 408 s~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 408 GRPGVFAGGDMVPGPRTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred CCCCEEeccCcCCCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4689999999876553 6789999999999998887643
No 201
>PTZ00052 thioredoxin reductase; Provisional
Probab=65.73 E-value=20 Score=34.42 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=32.9
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
+.++++++.|++|...+++ +.+.+ .+| +++.+|.||+++.....
T Consensus 236 GV~i~~~~~v~~v~~~~~~-~~v~~--~~g-~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 236 GTLFLEGVVPINIEKMDDK-IKVLF--SDG-TTELFDTVLYATGRKPD 279 (499)
T ss_pred CCEEEcCCeEEEEEEcCCe-EEEEE--CCC-CEEEcCEEEEeeCCCCC
Confidence 4589999999999876654 56665 456 36899999999776443
No 202
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=65.37 E-value=10 Score=35.18 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=29.1
Q ss_pred CCeEEeecc------cCCCchhHHHHHHHHHHHHHHHHhh
Q 021616 272 QGLFLGGNY------VAGVALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 272 ~~l~~aG~~------~~g~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
+|+.++||. +.|-|+.-|+.||..||+.|.+.+.
T Consensus 270 ~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~ 309 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESR 309 (398)
T ss_pred CCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHh
Confidence 789999997 3477899999999999999987653
No 203
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.27 E-value=12 Score=34.55 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=41.1
Q ss_pred hhHHHHHHHHH-hc-----cceeeCceeeeEEEcCCCcEEEEEEC--CCCeEEEecCEEEEcCCch
Q 021616 56 LTMLPEAISKR-LG-----SKVKLSWKLSGVKKLDSGEYSLTYET--PEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 56 ~~~L~~~L~~~-l~-----~~i~~~~~V~~I~~~~~~~~~v~~~~--~~g~~~~~ad~VI~a~p~~ 113 (310)
+..|-+.|..+ ++ .+++.++.|+.++..++|.+.+++.. .++.++++.|.||+||--.
T Consensus 274 i~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 274 IEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred HHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 45555555544 33 26888999999999988667777642 2233578999999998775
No 204
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=65.15 E-value=9.3 Score=38.01 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=31.2
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHHhhh
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~l~~ 306 (310)
..++||.+||-..|.. +-.|+..|+.||..|.+.|..
T Consensus 616 s~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~~ 653 (654)
T PRK12769 616 SNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 4589999999877655 588999999999999988753
No 205
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=64.55 E-value=10 Score=35.98 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=31.0
Q ss_pred CCCCeEEeecccCCC-chhHHHHHHHHHHHHHHHHhhh
Q 021616 270 GYQGLFLGGNYVAGV-ALGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~-gv~~ai~sG~~aA~~i~~~l~~ 306 (310)
..++||.+||...|. .+..|+.+|+.||..|.+.|.-
T Consensus 429 s~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 429 SNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCCCEEEccccCCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 458999999987664 3678999999999999988853
No 206
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=64.51 E-value=2.2 Score=40.05 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhcc
Q 021616 55 GLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLL 119 (310)
Q Consensus 55 G~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll 119 (310)
.+..+.+.+....+.+|++++.|..+..+++..+.|.+.+.+|..++.|+.||=|+---.+..+.
T Consensus 91 ~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~a 155 (428)
T PF12831_consen 91 VFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAALA 155 (428)
T ss_dssp -----------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45555566655556699999999999998765455666444565689999999998876666653
No 207
>PRK13748 putative mercuric reductase; Provisional
Probab=64.17 E-value=22 Score=34.55 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=31.4
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
+.+|++++.|++|+..+++ +.+.. .++ ++.+|.||+++....
T Consensus 324 gI~i~~~~~v~~i~~~~~~-~~v~~--~~~--~i~~D~vi~a~G~~p 365 (561)
T PRK13748 324 GIEVLEHTQASQVAHVDGE-FVLTT--GHG--ELRADKLLVATGRAP 365 (561)
T ss_pred CCEEEcCCEEEEEEecCCE-EEEEe--cCC--eEEeCEEEEccCCCc
Confidence 3589999999999876653 55553 445 589999999977643
No 208
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=63.77 E-value=9.7 Score=35.94 Aligned_cols=35 Identities=26% Similarity=0.558 Sum_probs=28.8
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~l 304 (310)
..++||.+||...|.. +..|+..|+.||..|.+.|
T Consensus 414 s~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 414 SIPGVFAGGDIILGAATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 3589999999876654 6789999999999987654
No 209
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=63.44 E-value=24 Score=32.90 Aligned_cols=42 Identities=7% Similarity=0.166 Sum_probs=30.5
Q ss_pred HhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 66 RLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 66 ~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
..+.++++++.|.+|+.++. + +.. .+| +++.+|.||++++..
T Consensus 191 ~~gV~v~~~~~v~~i~~~~~--~-v~~--~~g-~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 191 KHEINLRLNEEVDSIEGEER--V-KVF--TSG-GVYQADMVILATGIK 232 (427)
T ss_pred HcCCEEEeCCEEEEEecCCC--E-EEE--cCC-CEEEeCEEEECCCcc
Confidence 33568999999999976432 3 333 356 379999999998764
No 210
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=63.17 E-value=21 Score=29.01 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=30.9
Q ss_pred cceeeCceeeeEEEcCCC----cEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 69 SKVKLSWKLSGVKKLDSG----EYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~----~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.++++++.|.+|+...+. .+.+.....+...++.||+||+|+-..
T Consensus 73 v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 73 VEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred EEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccc
Confidence 478899999999888762 123322112233689999999998854
No 211
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=63.04 E-value=20 Score=34.81 Aligned_cols=50 Identities=8% Similarity=0.127 Sum_probs=35.7
Q ss_pred ceeeCceeeeEEEcCCC--c-EEEEEECC-CCe-EEEecCEEEEcCCchHHHhcc
Q 021616 70 KVKLSWKLSGVKKLDSG--E-YSLTYETP-EGL-VSLRSRSVVMTVPSYVASSLL 119 (310)
Q Consensus 70 ~i~~~~~V~~I~~~~~~--~-~~v~~~~~-~g~-~~~~ad~VI~a~p~~~~~~ll 119 (310)
+|++++.|.+|..++++ . ..|.+.+. +|+ .++.|+.||+|+-.=...+||
T Consensus 230 ~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 230 TLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred EEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 89999999999987542 2 33544332 343 458999999999887766664
No 212
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=62.92 E-value=20 Score=32.50 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 56 LTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 56 ~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
+....+...+..+.++++++.|++|+. + .|.+ .+| +++.+|.||+++...
T Consensus 193 ~~~~~~~~l~~~gV~v~~~~~v~~i~~--~---~v~~--~~g-~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 193 VRRLVLRLLARRGIEVHEGAPVTRGPD--G---ALIL--ADG-RTLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEcC--C---eEEe--CCC-CEEecCEEEEccCCC
Confidence 344444444444568999999999852 2 2443 456 479999999998864
No 213
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=61.94 E-value=13 Score=34.60 Aligned_cols=69 Identities=28% Similarity=0.309 Sum_probs=50.5
Q ss_pred ceeeeccchhhH-HHHHHHHHh-------ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhc
Q 021616 47 QTVGSFRKGLTM-LPEAISKRL-------GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSL 118 (310)
Q Consensus 47 ~~~~~~~gG~~~-L~~~L~~~l-------~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~l 118 (310)
..+|.=.+-|+. |++.|++.. +++|+-|..|+++.....+ ..+.+ .|| .+++.|.||+|+-..-...|
T Consensus 378 ~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~n-l~lkL--~dG-~~l~tD~vVvavG~ePN~el 453 (659)
T KOG1346|consen 378 HQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKN-LVLKL--SDG-SELRTDLVVVAVGEEPNSEL 453 (659)
T ss_pred EEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccc-eEEEe--cCC-CeeeeeeEEEEecCCCchhh
Confidence 345555566777 678887663 2489999999999988776 77776 688 58999999999765444444
Q ss_pred c
Q 021616 119 L 119 (310)
Q Consensus 119 l 119 (310)
.
T Consensus 454 a 454 (659)
T KOG1346|consen 454 A 454 (659)
T ss_pred c
Confidence 4
No 214
>PRK08071 L-aspartate oxidase; Provisional
Probab=61.88 E-value=22 Score=34.27 Aligned_cols=57 Identities=14% Similarity=0.008 Sum_probs=37.4
Q ss_pred HHHHHHHHHh--ccceeeCceeeeEEEcCCCcEEEEEECCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL--GSKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l--~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.+.+.|.+.+ +.+|+.++.|.+|..+++....+.....+|+ ..+.|+.||+|+-...
T Consensus 131 ~i~~~L~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 131 NLLEHLLQELVPHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHhcCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 4667776654 3589999999999876552222443333443 2578999999986633
No 215
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=61.15 E-value=15 Score=35.19 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=31.1
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHHhhhc
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQY 307 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~l~~~ 307 (310)
..++||.+||...|.. +..|+..|+.||..|.+.|...
T Consensus 443 s~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~g~ 481 (485)
T TIGR01317 443 SIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLMGS 481 (485)
T ss_pred CCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4689999999876543 5679999999999999888643
No 216
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=60.68 E-value=30 Score=32.01 Aligned_cols=58 Identities=7% Similarity=0.068 Sum_probs=36.3
Q ss_pred eccchhhHHHHHHHHHhcc-ceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 51 SFRKGLTMLPEAISKRLGS-KVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 51 ~~~gG~~~L~~~L~~~l~~-~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
.-+.-+...+....+..+. +| ....|+.|..+++..+.|.+ .+| +.+.+|.||+|+-.
T Consensus 92 vDr~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~~~v~GV~~--~~g-~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 92 VDRDKYSRAMREKLESHPNLTI-IQGEVTDLIVENGKVKGVVT--KDG-EEIEADAVVLATGT 150 (392)
T ss_dssp E-HHHHHHHHHHHHHTSTTEEE-EES-EEEEEECTTEEEEEEE--TTS-EEEEECEEEE-TTT
T ss_pred ccHHHHHHHHHHHHhcCCCeEE-EEcccceEEecCCeEEEEEe--CCC-CEEecCEEEEeccc
Confidence 3344455555444444222 45 56799999998875344554 678 58999999999887
No 217
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=60.60 E-value=35 Score=33.63 Aligned_cols=46 Identities=11% Similarity=0.220 Sum_probs=31.5
Q ss_pred ccceeeCceeeeEEEcCCCc-EEEEEEC-CCCe-EEEecCEEEEcCCch
Q 021616 68 GSKVKLSWKLSGVKKLDSGE-YSLTYET-PEGL-VSLRSRSVVMTVPSY 113 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~-~~v~~~~-~~g~-~~~~ad~VI~a~p~~ 113 (310)
+.+|+++++|++|..+++|. +.|...+ .+|. ..+.|+.||+||--.
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 35899999999998765432 3343322 2453 368899999998663
No 218
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=60.51 E-value=32 Score=32.38 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=29.9
Q ss_pred cceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.+|+++++|.+|+..++..+.++..+.++ +++.+|.||+++...
T Consensus 224 I~i~~~~~v~~i~~~~~~~v~~~~~~~~~-~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 224 FKIKLGAKVTSVEKSGDEKVEELEKGGKT-ETIEADYVLVATGRR 267 (460)
T ss_pred cEEEcCCEEEEEEEcCCceEEEEEcCCce-EEEEeCEEEEccCCc
Confidence 48999999999987654224443211222 468999999997653
No 219
>PLN02661 Putative thiazole synthesis
Probab=60.44 E-value=11 Score=34.33 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=29.3
Q ss_pred CCCCeEEeeccc---C-----CCchhHHHHHHHHHHHHHHHHhhh
Q 021616 270 GYQGLFLGGNYV---A-----GVALGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 270 ~~~~l~~aG~~~---~-----g~gv~~ai~sG~~aA~~i~~~l~~ 306 (310)
-+||||+||... + |+-..+=+.||+++|+.|++.|..
T Consensus 285 v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 285 VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 469999999873 2 333566799999999999999864
No 220
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=59.57 E-value=13 Score=35.09 Aligned_cols=37 Identities=24% Similarity=0.513 Sum_probs=30.7
Q ss_pred CCCCeEEeecccCCC-chhHHHHHHHHHHHHHHHHhhh
Q 021616 270 GYQGLFLGGNYVAGV-ALGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~-gv~~ai~sG~~aA~~i~~~l~~ 306 (310)
..++||.+||...+. .+..|+.+|+.||..|.+.|..
T Consensus 416 s~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 416 SLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred CCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 358999999987653 3678999999999999988764
No 221
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=59.43 E-value=34 Score=33.43 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=37.9
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEE-ECCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTY-ETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~-~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|++.|.+.+ +.+|..++.|++|..+++..+.+.. +..+|+ ..+.|+.||+||-...
T Consensus 120 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 120 AILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 4666666654 3589999999999876442223332 223553 3678999999988754
No 222
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=59.39 E-value=26 Score=32.81 Aligned_cols=43 Identities=12% Similarity=0.165 Sum_probs=31.0
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEe--cCEEEEcCCch
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLR--SRSVVMTVPSY 113 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~--ad~VI~a~p~~ 113 (310)
+.++++++.|++|+.+++. +.+.. ..+| .+++ +|++|+|+-..
T Consensus 70 gv~~~~~~~V~~id~~~~~-v~~~~-~~~~-~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKT-ITVKN-LKTG-SIFNDTYDKLMIATGAR 114 (444)
T ss_pred CCeEEecCEEEEEECCCCE-EEEEE-CCCC-CEEEecCCEEEECCCCC
Confidence 4578899999999987764 66543 1234 3455 99999998764
No 223
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=59.25 E-value=16 Score=38.40 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=32.1
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHHhhhc
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQY 307 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~l~~~ 307 (310)
..++||.+||...|.. +-.|+..|+.||..|.+.|..+
T Consensus 719 s~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 719 NLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred CCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4689999999877654 6789999999999999888654
No 224
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=59.06 E-value=11 Score=32.95 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=27.4
Q ss_pred CCCCeEEeecccC-CC-chhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYVA-GV-ALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~~-g~-gv~~ai~sG~~aA~~i~~~l 304 (310)
..++||.+||... +. .+..|+.+|+.||..|.+.+
T Consensus 264 ~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 264 SVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred CCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 3589999999764 22 36789999999999987653
No 225
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=58.82 E-value=38 Score=33.64 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=32.3
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEEC-CCCe-EEEecCEEEEcCCchH
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYET-PEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~-~~g~-~~~~ad~VI~a~p~~~ 114 (310)
+.+|++++.|++|..+++..+.|...+ .+|. ..+.|+.||+||--..
T Consensus 184 gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 184 TVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred CCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 458999999999987654323344322 2453 3589999999987744
No 226
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=58.52 E-value=44 Score=31.65 Aligned_cols=63 Identities=8% Similarity=0.062 Sum_probs=41.2
Q ss_pred eeeccc-hhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 49 VGSFRK-GLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 49 ~~~~~g-G~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
-|.+.- -+..+....+...+++++.+ .|.++...++| ....+...+| ++++||.||=|+-...
T Consensus 148 ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g-~i~~v~~~~g-~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 148 AYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDG-RITAVRLDDG-RTIEADFFIDASGRRS 211 (454)
T ss_dssp EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTS-EEEEEEETTS-EEEEESEEEE-SGGG-
T ss_pred eEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCC-CEEEEEECCC-CEEEEeEEEECCCccc
Confidence 355554 47777777777777788777 48888888776 4333334677 5899999999887644
No 227
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=58.51 E-value=22 Score=36.22 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=31.9
Q ss_pred HhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 66 RLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 66 ~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
..+.+++++++|++|+..+. .|.+ .+| .++.||++|+||-..
T Consensus 66 ~~gv~~~~g~~V~~Id~~~k---~V~~--~~g-~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 66 KHGITLYTGETVIQIDTDQK---QVIT--DAG-RTLSYDKLILATGSY 107 (785)
T ss_pred HCCCEEEcCCeEEEEECCCC---EEEE--CCC-cEeeCCEEEECCCCC
Confidence 34458999999999987654 3444 466 479999999998864
No 228
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=58.35 E-value=8.6 Score=35.89 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=24.9
Q ss_pred hhhcCCCCeEEeecc------cCCCchhHHHHHHHHHHH
Q 021616 266 LRDNGYQGLFLGGNY------VAGVALGRCVESAYEVAS 298 (310)
Q Consensus 266 ~~~~~~~~l~~aG~~------~~g~gv~~ai~sG~~aA~ 298 (310)
+++...+||||||+- +.|.++.-|+.||+.|+.
T Consensus 370 meSk~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~ 408 (409)
T PF03486_consen 370 MESKLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGK 408 (409)
T ss_dssp -BBSSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH
T ss_pred hcccCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhC
Confidence 333346899999996 457789999999999985
No 229
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=57.86 E-value=17 Score=34.60 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=29.8
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHHhh
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~l~ 305 (310)
..++||.+||...+.. +..|+..|+.||..|.+.|.
T Consensus 430 ~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 430 TNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 3589999999876654 47899999999999988764
No 230
>PRK07395 L-aspartate oxidase; Provisional
Probab=56.17 E-value=23 Score=34.47 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=36.3
Q ss_pred HHHHHHHHHh----ccceeeCceeeeEEEcC-CCc-EEEEEECCCCe-EEEecCEEEEcCCch
Q 021616 58 MLPEAISKRL----GSKVKLSWKLSGVKKLD-SGE-YSLTYETPEGL-VSLRSRSVVMTVPSY 113 (310)
Q Consensus 58 ~L~~~L~~~l----~~~i~~~~~V~~I~~~~-~~~-~~v~~~~~~g~-~~~~ad~VI~a~p~~ 113 (310)
.+++.|.+.+ +.+|++++.|.+|..++ +|. +.|... .+|. ..+.++.||+||-..
T Consensus 135 ~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~-~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 135 AIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLL-YQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEE-ECCeEEEEEcCEEEEcCCCC
Confidence 4666666544 34899999999998764 232 233332 2442 347899999998874
No 231
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=55.91 E-value=16 Score=37.02 Aligned_cols=37 Identities=24% Similarity=0.463 Sum_probs=30.9
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHHhhh
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~l~~ 306 (310)
..++||.+||-..|.. +-.|+.+|+.||..|.+.|..
T Consensus 714 s~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 714 SIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4589999999876653 678999999999999888753
No 232
>PLN02697 lycopene epsilon cyclase
Probab=55.83 E-value=2e+02 Score=27.89 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=36.5
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.|.+.|.+.+ +.++ ++++|++|...+++ +.+... .+| .++.||.||.|+-...
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~-~dG-~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVAC-EDG-RVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEE-cCC-cEEECCEEEECCCcCh
Confidence 3445555544 3355 78899999987775 654332 456 4799999999988765
No 233
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=55.79 E-value=22 Score=32.19 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=26.9
Q ss_pred CCCCeEEeecccC--CC----chhHHHHHHHHHHHHHHHHhh
Q 021616 270 GYQGLFLGGNYVA--GV----ALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 270 ~~~~l~~aG~~~~--g~----gv~~ai~sG~~aA~~i~~~l~ 305 (310)
..++||.+||... .. ....|+.+|..+|..|.+.+.
T Consensus 270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~ 311 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLR 311 (364)
T ss_pred CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhc
Confidence 4689999999753 11 134589999999999988764
No 234
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=55.64 E-value=30 Score=31.94 Aligned_cols=40 Identities=8% Similarity=0.086 Sum_probs=30.5
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
+.++++++.|..|+..+. .|.+ .+| +++.||++|+||-..
T Consensus 72 ~i~~~~g~~V~~id~~~~---~v~~--~~g-~~~~yd~LViATGs~ 111 (396)
T PRK09754 72 NVHLHSGVTIKTLGRDTR---ELVL--TNG-ESWHWDQLFIATGAA 111 (396)
T ss_pred CCEEEcCCEEEEEECCCC---EEEE--CCC-CEEEcCEEEEccCCC
Confidence 458899999999988654 3444 456 479999999998764
No 235
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=55.25 E-value=63 Score=31.83 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=38.6
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCc-EEEEE-ECCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGE-YSLTY-ETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~-~~v~~-~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|++.|.+.+ +.+|.+++.|++|..+++|. +.|.. +..+|. ..+.|+.||+||--..
T Consensus 150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 3667776654 35899999999998876432 23332 234553 3688999999987754
No 236
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=55.22 E-value=43 Score=32.61 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=36.6
Q ss_pred HHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEE-ECCCCe-EEEecCEEEEcCCchH
Q 021616 59 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTY-ETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 59 L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~-~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
+...|.+.+ +.+|..++.|++|..+++....|.. ...+|+ ..+.++.||+|+-...
T Consensus 131 i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 131 LLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 555555543 4589999999999876553222332 223553 3589999999988643
No 237
>PRK07804 L-aspartate oxidase; Provisional
Probab=55.03 E-value=49 Score=32.11 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=37.9
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCc-EEEEEE-----CCCCeEEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGE-YSLTYE-----TPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~-~~v~~~-----~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.|.+.|.+.+ +.+|+.++.|.+|..+++|. +.+.+. ..++...+.|+.||+|+-...
T Consensus 145 ~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 145 EVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 4666666654 35899999999998875432 233332 233434689999999987643
No 238
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=54.53 E-value=11 Score=35.08 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=23.7
Q ss_pred CCCCeEEeecc------cCCCchhHHHHHHHHHH
Q 021616 270 GYQGLFLGGNY------VAGVALGRCVESAYEVA 297 (310)
Q Consensus 270 ~~~~l~~aG~~------~~g~gv~~ai~sG~~aA 297 (310)
..+||||||+- +.|.++.-|+.||+.|+
T Consensus 366 ~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 366 LVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred CCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 45999999995 45778999999999886
No 239
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=54.02 E-value=38 Score=31.60 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=29.2
Q ss_pred HHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 65 KRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 65 ~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
+..+.+++++++|++|.. + .|.+ .+| +++.+|.||.++..
T Consensus 239 ~~~gV~v~~~~~v~~v~~--~---~v~~--~~g-~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 239 RRLGVDIRTKTAVKEVLD--K---EVVL--KDG-EVIPTGLVVWSTGV 278 (424)
T ss_pred HHCCCEEEeCCeEEEEeC--C---EEEE--CCC-CEEEccEEEEccCC
Confidence 344568999999999863 3 2444 467 47999999999764
No 240
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=54.01 E-value=19 Score=37.57 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=30.2
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHHhh
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~l~ 305 (310)
..++||.+||...|.. +-.|+..|+.||..|.+.|.
T Consensus 591 s~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 591 SIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 3589999999877653 68899999999999987764
No 241
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=53.50 E-value=28 Score=34.43 Aligned_cols=65 Identities=22% Similarity=0.218 Sum_probs=49.9
Q ss_pred Cceeeeccch---hhHHHHHHHHH---hccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 46 GQTVGSFRKG---LTMLPEAISKR---LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 46 ~~~~~~~~gG---~~~L~~~L~~~---l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
...+|.+..| -..+..+|+.. +++.|.-||+|++|....++.+.|. |.-| .+++.+||-|+-.+.
T Consensus 173 ~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVe--T~~G--~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 173 YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVE--TPHG--SIETECVVNAAGVWA 243 (856)
T ss_pred eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCcccee--ccCc--ceecceEEechhHHH
Confidence 3457888888 35577777644 5679999999999998877656555 4778 589999999988765
No 242
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=53.33 E-value=31 Score=31.64 Aligned_cols=48 Identities=23% Similarity=0.251 Sum_probs=34.5
Q ss_pred HHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 58 MLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 58 ~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.+-+.|.+.++..|+++++|+++ +.++ +.+ .+| ++++||.||-|.+.+
T Consensus 90 ~f~~~l~~~l~~~i~~~~~V~~v--~~~~-v~l----~dg-~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 90 RFHEGLLQAFPEGVILGRKAVGL--DADG-VDL----APG-TRINARSVIDCRGFK 137 (370)
T ss_pred HHHHHHHHhhcccEEecCEEEEE--eCCE-EEE----CCC-CEEEeeEEEECCCCC
Confidence 45566666666568899999988 3443 443 356 479999999999876
No 243
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=52.82 E-value=50 Score=32.63 Aligned_cols=56 Identities=7% Similarity=-0.008 Sum_probs=35.7
Q ss_pred HHHHHHHHh---c-cceeeCceeeeEEEcCCCcEEEEE-ECCCCe-EEEecCEEEEcCCchH
Q 021616 59 LPEAISKRL---G-SKVKLSWKLSGVKKLDSGEYSLTY-ETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 59 L~~~L~~~l---~-~~i~~~~~V~~I~~~~~~~~~v~~-~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
+.+.|.+.+ + .+|+.++.|.+|..+++..+.|.. ...+|+ ..+.++.||+|+-...
T Consensus 134 ~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 134 YKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 444454333 3 589999999999876553222322 223442 3689999999988644
No 244
>PRK10262 thioredoxin reductase; Provisional
Probab=52.81 E-value=50 Score=29.36 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=34.7
Q ss_pred HHHHHHHHhc---cceeeCceeeeEEEcCCCcEEEEEECC--CC-eEEEecCEEEEcCCch
Q 021616 59 LPEAISKRLG---SKVKLSWKLSGVKKLDSGEYSLTYETP--EG-LVSLRSRSVVMTVPSY 113 (310)
Q Consensus 59 L~~~L~~~l~---~~i~~~~~V~~I~~~~~~~~~v~~~~~--~g-~~~~~ad~VI~a~p~~ 113 (310)
+.+.+.+.+. .++++++.|++|...+++...|++... ++ .+++.+|.||+++...
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 4455555443 478999999999876543223444221 12 2468999999987653
No 245
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=52.73 E-value=44 Score=32.65 Aligned_cols=57 Identities=9% Similarity=0.051 Sum_probs=37.7
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEEC-CCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYET-PEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~-~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|++.|.+.+ +.+|..++.++++..+++..+.|...+ .+|+ ..+.|+.||+||-...
T Consensus 137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 137 ALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 3566665543 358999999999998655322343322 2442 3678999999988754
No 246
>PLN02815 L-aspartate oxidase
Probab=52.09 E-value=42 Score=33.05 Aligned_cols=57 Identities=11% Similarity=0.017 Sum_probs=36.7
Q ss_pred HHHHHHHHHh----ccceeeCceeeeEEEcCCC----cEEEEE-ECCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL----GSKVKLSWKLSGVKKLDSG----EYSLTY-ETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l----~~~i~~~~~V~~I~~~~~~----~~~v~~-~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|.+.|.+.+ +.+|..++.+.+|..+++| .+.+.. +..+|. ..+.|+.||+||--..
T Consensus 156 ~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 156 EIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 3556665554 3479999999999875432 123333 233553 3578999999988643
No 247
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=51.98 E-value=53 Score=32.58 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=38.3
Q ss_pred hHHHHHHHHHh---ccceeeCceeeeEEEcC--CCcEEEEEEC-CCCeE-EEecCEEEEcCCchH
Q 021616 57 TMLPEAISKRL---GSKVKLSWKLSGVKKLD--SGEYSLTYET-PEGLV-SLRSRSVVMTVPSYV 114 (310)
Q Consensus 57 ~~L~~~L~~~l---~~~i~~~~~V~~I~~~~--~~~~~v~~~~-~~g~~-~~~ad~VI~a~p~~~ 114 (310)
..|+..|+... +.+|+.+++|++|..++ ++.+.|.+.+ .+|+. ++.+|.||+|+-+..
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 34666665543 45899999999998764 3323344421 23322 689999999999864
No 248
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=51.02 E-value=61 Score=32.36 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=37.7
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEE-CCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYE-TPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~-~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|...|.+.+ +.+|+.++.|.+|..+++..+.+.+. ..+|+ ..+.|+.||+||-...
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 4555665543 45899999999999765532233332 24563 3478999999988644
No 249
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=50.72 E-value=52 Score=32.21 Aligned_cols=56 Identities=5% Similarity=-0.016 Sum_probs=35.9
Q ss_pred HHHHHHHHh----ccceeeCceeeeEEEcCCCcEEEEE-ECCCCe-EEEecCEEEEcCCchH
Q 021616 59 LPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLTY-ETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 59 L~~~L~~~l----~~~i~~~~~V~~I~~~~~~~~~v~~-~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
+++.|.+.+ +.++..++.|.+|...++..+.+.. ...+|+ ..+.|+.||+|+-...
T Consensus 139 i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 139 IMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 555555543 3479999999999876543222322 224553 3589999999987753
No 250
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=50.63 E-value=31 Score=33.28 Aligned_cols=50 Identities=6% Similarity=0.068 Sum_probs=33.4
Q ss_pred cceeeCceeeeEEEcCCCcEEEEEECCCCe-EEEecCEEEEcCCchHHHhc
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSYVASSL 118 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~-~~~~ad~VI~a~p~~~~~~l 118 (310)
.+|++++.|++|..+++....|.+...++. ..+.++.||+|.-+-...+|
T Consensus 209 l~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~L 259 (532)
T TIGR01810 209 LEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQL 259 (532)
T ss_pred eEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHH
Confidence 489999999999987553344555333222 23589999999877444443
No 251
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=50.55 E-value=2e+02 Score=26.27 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=37.5
Q ss_pred HHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCC
Q 021616 65 KRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRP 121 (310)
Q Consensus 65 ~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~ 121 (310)
..+++-++-+..|..+...++....|.+.|.+|. .+.|+.+|+|+-++.. ++|++
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs-~Y~akkiI~t~GaWi~-klL~~ 218 (399)
T KOG2820|consen 164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGS-IYHAKKIIFTVGAWIN-KLLPT 218 (399)
T ss_pred HHcCeEEecCcceeeEeeccCCCceeEEEeccCC-eeecceEEEEecHHHH-hhcCc
Confidence 4456789999999999854321133333356773 6899999999998766 44443
No 252
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=50.01 E-value=26 Score=34.90 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=30.6
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHHhhh
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~l~~ 306 (310)
..++||.+||-..+.. +..|+.+|+.||..|.+.|..
T Consensus 465 s~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~g 502 (652)
T PRK12814 465 SVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDLFLNG 502 (652)
T ss_pred CCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 4689999999876654 578999999999999888753
No 253
>PLN02546 glutathione reductase
Probab=50.00 E-value=62 Score=31.60 Aligned_cols=46 Identities=15% Similarity=0.084 Sum_probs=31.3
Q ss_pred hccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 67 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 67 l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
.+.++++++.|++|...+++.+.+.. .++ +...+|.||+++.....
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~v~v~~--~~g-~~~~~D~Viva~G~~Pn 351 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGSLSLKT--NKG-TVEGFSHVMFATGRKPN 351 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCEEEEEE--CCe-EEEecCEEEEeeccccC
Confidence 34589999999999876554344443 445 34558999999766443
No 254
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=49.44 E-value=69 Score=31.41 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=37.4
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCC---CcE-EEEE-ECCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDS---GEY-SLTY-ETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~---~~~-~v~~-~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|.+.|.+.+ +.+|..++.|.+|..+++ |.+ .+.. ...+|+ ..+.|+.||+|+-...
T Consensus 141 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 141 MILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 4666666554 358999999999987652 322 2332 223453 3578999999987754
No 255
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=48.53 E-value=19 Score=34.60 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=27.8
Q ss_pred CCCCeEEeeccc---------CCCchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV---------AGVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~---------~g~gv~~ai~sG~~aA~~i~~~l 304 (310)
+.+|||-||+-. .|.++..|+.+|+.|++.+.+..
T Consensus 460 pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 460 PITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred EeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 578999999842 24457889999999999987654
No 256
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=47.92 E-value=28 Score=34.79 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=40.6
Q ss_pred chhhHHH---HHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 54 KGLTMLP---EAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 54 gG~~~L~---~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
.-+..++ ...+++.+.+++++.+|.+|+..+. +|+. ++| +++.+|.+|+||-...+
T Consensus 56 ~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k---~V~t--~~g-~~~~YDkLilATGS~pf 114 (793)
T COG1251 56 KTAEDISLNRNDWYEENGITLYTGEKVIQIDRANK---VVTT--DAG-RTVSYDKLIIATGSYPF 114 (793)
T ss_pred ccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcc---eEEc--cCC-cEeecceeEEecCcccc
Confidence 3455544 3556666779999999999998776 3443 677 58999999999765443
No 257
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=47.79 E-value=25 Score=36.83 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=28.3
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNF 303 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~ 303 (310)
..++||.+||...|.. +..|+.+|+.||..|+..
T Consensus 804 s~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 804 NITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred CCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 3589999999876544 688999999999999854
No 258
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=47.71 E-value=22 Score=33.55 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCCCeEEeecccC----------CCchhHHHHHHHHHHHHHHHHhh
Q 021616 270 GYQGLFLGGNYVA----------GVALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 270 ~~~~l~~aG~~~~----------g~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
+.+|||-||+-.. |.++..|+.+|+.|++.+.+...
T Consensus 417 ~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~ 462 (466)
T PRK08274 417 PSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQ 462 (466)
T ss_pred CCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhh
Confidence 5789999997421 35688899999999999977644
No 259
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=47.68 E-value=72 Score=31.23 Aligned_cols=57 Identities=16% Similarity=0.323 Sum_probs=37.1
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEE-EECCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLT-YETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~-~~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|.+.|.+.+ +.+|.+++.|.+|..+++....+. +...+|+ ..+.|+.||+|+-...
T Consensus 136 ~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 136 AILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 4666666554 348999999999987654212222 2223553 3589999999987744
No 260
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=46.68 E-value=44 Score=31.60 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=45.5
Q ss_pred chhhHHHHHHHHHhccceeeCceeeeEEEcCCCcE-EEEEECCCCeEEEecCEEEEcCCchHHHhccC
Q 021616 54 KGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEY-SLTYETPEGLVSLRSRSVVMTVPSYVASSLLR 120 (310)
Q Consensus 54 gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~-~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~ 120 (310)
...++.++.+.+.-+.++++++.+.+++-+.+|.+ .|. ..+| .++++|-||+.+-...+.+++.
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~--l~dg-~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVK--LKDG-KTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEE--eccC-CEeccCeEEEeecccccccccc
Confidence 34555555555554569999999999999886633 333 3678 5899999999988766655554
No 261
>PRK07121 hypothetical protein; Validated
Probab=46.28 E-value=23 Score=33.78 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=26.7
Q ss_pred CCCCeEEeeccc---------CCCchhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYV---------AGVALGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~---------~g~gv~~ai~sG~~aA~~i~~ 302 (310)
+.+|||.||+-. .|.++..|+.+|+.|++.+.+
T Consensus 448 pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~ 489 (492)
T PRK07121 448 PIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAA 489 (492)
T ss_pred CcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHh
Confidence 578999999742 255688899999999998864
No 262
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=46.18 E-value=46 Score=34.31 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=30.9
Q ss_pred hccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCch
Q 021616 67 LGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 67 l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
.+.++++++.|.+|+.... .|.+ .+| +.+.||++|+||-..
T Consensus 72 ~gI~~~~g~~V~~Id~~~~---~V~~--~~G-~~i~yD~LVIATGs~ 112 (847)
T PRK14989 72 HGIKVLVGERAITINRQEK---VIHS--SAG-RTVFYDKLIMATGSY 112 (847)
T ss_pred CCCEEEcCCEEEEEeCCCc---EEEE--CCC-cEEECCEEEECCCCC
Confidence 3458999999999987543 3443 466 479999999998764
No 263
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=46.15 E-value=74 Score=31.49 Aligned_cols=56 Identities=11% Similarity=0.173 Sum_probs=36.3
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcE-EEEE-ECCCCe-EEEecCEEEEcCCch
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEY-SLTY-ETPEGL-VSLRSRSVVMTVPSY 113 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~-~v~~-~~~~g~-~~~~ad~VI~a~p~~ 113 (310)
.|...|.+.+ +.+|..++.|+++..+++|.+ .|.. +..+|+ ..+.|+.||+||-..
T Consensus 167 ~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 167 AMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 3555665543 458999999999887433323 3332 234553 357899999999553
No 264
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=45.99 E-value=68 Score=27.74 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=35.5
Q ss_pred hHHHHHHHHHh---ccceeeCceeeeEEEcCCC-cEEEEEEC----CCC----eEEEecCEEEEcCCc
Q 021616 57 TMLPEAISKRL---GSKVKLSWKLSGVKKLDSG-EYSLTYET----PEG----LVSLRSRSVVMTVPS 112 (310)
Q Consensus 57 ~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~-~~~v~~~~----~~g----~~~~~ad~VI~a~p~ 112 (310)
..+...|.+.. +.+|+.++.|+.|..++++ .+.+.+.. .+| ..++.|+.||.|+-.
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH 171 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC
Confidence 35556665443 4589999999999876653 22232211 011 247899999999864
No 265
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=45.71 E-value=74 Score=31.55 Aligned_cols=44 Identities=16% Similarity=0.027 Sum_probs=30.0
Q ss_pred cceeeCceeeeEEEcCCCcEEEEE-ECCCCe-EEEecCEEEEcCCc
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTY-ETPEGL-VSLRSRSVVMTVPS 112 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~-~~~~g~-~~~~ad~VI~a~p~ 112 (310)
.+|..++.|.+|..+++..+.+.. ...+|. ..+.|+.||+|+-.
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 589999999999876542222222 223453 35899999999886
No 266
>PRK08275 putative oxidoreductase; Provisional
Probab=45.57 E-value=88 Score=30.45 Aligned_cols=56 Identities=9% Similarity=0.130 Sum_probs=36.2
Q ss_pred HHHHHHHHh---ccceeeCceeeeEEEcCCCcE-EEEE-ECCCCe-EEEecCEEEEcCCchH
Q 021616 59 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEY-SLTY-ETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 59 L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~-~v~~-~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
+.+.|.+.+ +.+|..++.|++|..++++.+ .+.. ...+|+ ..+.++.||+|+-...
T Consensus 139 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 139 IKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 455555443 458999999999988633323 2332 223553 3578999999987743
No 267
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=44.87 E-value=58 Score=31.56 Aligned_cols=43 Identities=14% Similarity=0.308 Sum_probs=28.7
Q ss_pred eCceeeeEEEcCCC-cEEEEEECCCCeEEEecCEEEEcCCchHHHhc
Q 021616 73 LSWKLSGVKKLDSG-EYSLTYETPEGLVSLRSRSVVMTVPSYVASSL 118 (310)
Q Consensus 73 ~~~~V~~I~~~~~~-~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~l 118 (310)
....|+.|...++. .+.|. +.+| ..+.|++||+||--..-..+
T Consensus 119 ~q~~v~dli~e~~~~v~GV~--t~~G-~~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 119 LQGEVEDLIVEEGQRVVGVV--TADG-PEFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred hHhhhHHHhhcCCCeEEEEE--eCCC-CeeecCEEEEeecccccceE
Confidence 34567777775552 23344 4788 58999999999877655444
No 268
>PRK10262 thioredoxin reductase; Provisional
Probab=44.50 E-value=18 Score=32.20 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCCCeEEeecccCCC--chhHHHHHHHHHHHHHHHHhhhcc
Q 021616 270 GYQGLFLGGNYVAGV--ALGRCVESAYEVASEVSNFLSQYA 308 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~--gv~~ai~sG~~aA~~i~~~l~~~~ 308 (310)
..++||.+||-.... -+-.|+..|..||..|.+.+...+
T Consensus 278 ~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~~~~ 318 (321)
T PRK10262 278 SIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLA 318 (321)
T ss_pred CCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHHhcc
Confidence 468999999986432 245589999999999988886554
No 269
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.44 E-value=1.3e+02 Score=29.43 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=38.6
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcE-EEEE-ECCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEY-SLTY-ETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~-~v~~-~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|...|.+.+ +.+|..++.++++..+++|++ .+.. +..+|+ ..+.|+.||+||-...
T Consensus 127 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 127 ALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 4667776654 358999999999988644423 3332 234553 3578999999987754
No 270
>PRK02106 choline dehydrogenase; Validated
Probab=44.21 E-value=38 Score=32.99 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=34.5
Q ss_pred cceeeCceeeeEEEcCCCcEEEEEECCCCe-EEEecCEEEEcCCchHHHhc
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSYVASSL 118 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~-~~~~ad~VI~a~p~~~~~~l 118 (310)
.+|++++.|++|..+++....|++...++. ..+.++.||+|.-.-...+|
T Consensus 216 l~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~L 266 (560)
T PRK02106 216 LTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQL 266 (560)
T ss_pred cEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHH
Confidence 389999999999987543345555434442 24689999999877555444
No 271
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=44.19 E-value=71 Score=34.32 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCCCeEEeeccc---------CCCchhHHHHHHHHHHHHHHHHhhhc
Q 021616 270 GYQGLFLGGNYV---------AGVALGRCVESAYEVASEVSNFLSQY 307 (310)
Q Consensus 270 ~~~~l~~aG~~~---------~g~gv~~ai~sG~~aA~~i~~~l~~~ 307 (310)
+.+|||.||+-. .|.++..|+..|+.|++.+.+.+.++
T Consensus 859 pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~ 905 (1167)
T PTZ00306 859 PILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKK 905 (1167)
T ss_pred eeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 579999999842 24457789999999999998876554
No 272
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=44.12 E-value=57 Score=31.42 Aligned_cols=46 Identities=11% Similarity=0.077 Sum_probs=30.7
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEEC-CCC-eEEEecCEEEEcCCch
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYET-PEG-LVSLRSRSVVMTVPSY 113 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~-~~g-~~~~~ad~VI~a~p~~ 113 (310)
+.+|++++.|++|..++++...|++.. .+| ++++.+|.||+++-..
T Consensus 402 gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~ 449 (515)
T TIGR03140 402 NVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLV 449 (515)
T ss_pred CCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCc
Confidence 458999999999986654322355422 122 2468999999987653
No 273
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=44.11 E-value=72 Score=31.33 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=36.3
Q ss_pred HHHHHHHHHh----ccceeeCceeeeEEEcCCCcEEEE-EECCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLT-YETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l----~~~i~~~~~V~~I~~~~~~~~~v~-~~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|...|.+.+ +.++..++.|++|..+++....+. ++..+|+ ..+.|+.||+|+-...
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 3556665543 237889999999987655312222 2224553 4689999999987633
No 274
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=44.08 E-value=25 Score=34.32 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=27.9
Q ss_pred CCCCeEEeeccc---------C-CCchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV---------A-GVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~---------~-g~gv~~ai~sG~~aA~~i~~~l 304 (310)
+.+|||.||+-. . |.++..|+.+|+.|++.+.+..
T Consensus 506 pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~ 550 (557)
T PRK12844 506 VIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGAR 550 (557)
T ss_pred CccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhcc
Confidence 578999999742 1 4568899999999999987654
No 275
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=42.51 E-value=34 Score=35.92 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=29.9
Q ss_pred CCCeEEeecccCCCchhHHHHHHHHHHHHHHHHhh
Q 021616 271 YQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 271 ~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
.++||.|||.....++..|+.+|..||..|...+.
T Consensus 438 v~gVyaaGD~~g~~~~~~A~~eG~~Aa~~i~~~lg 472 (985)
T TIGR01372 438 VQGCILAGAANGLFGLAAALADGAAAGAAAARAAG 472 (985)
T ss_pred CCCeEEeeccCCccCHHHHHHHHHHHHHHHHHHcC
Confidence 58999999977556788999999999999987764
No 276
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=42.13 E-value=38 Score=31.37 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=27.3
Q ss_pred hhhcCCCCeEEeecccCCCchhHHHHHHHHHHHHHHHHhh
Q 021616 266 LRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 266 ~~~~~~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
++....+||||||+-..-.|-+.|..+|..|+-.+...+.
T Consensus 350 l~~k~~~~lf~AGqi~G~~Gy~eaaa~G~~ag~na~~~~~ 389 (392)
T PF01134_consen 350 LETKKIPGLFFAGQINGTEGYEEAAAQGLIAGINAARRLQ 389 (392)
T ss_dssp SBBSSSBTEEE-GGGGTB-SHHHHHHHHHHHHHHHHHHHT
T ss_pred eEECCCCCceECCCCcchhHHHHHHHHHHHHHHHHHHHHc
Confidence 4432468999999976545678888888888877765543
No 277
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=42.10 E-value=47 Score=31.39 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=41.6
Q ss_pred eccchhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 51 SFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 51 ~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
+...|+..-.....+..+..+++++.|++++..... |.+ .+| +++.++++|+||-.
T Consensus 124 ~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~---l~~--~~G-e~~kys~LilATGs 179 (478)
T KOG1336|consen 124 TVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKT---LVL--GNG-ETLKYSKLIIATGS 179 (478)
T ss_pred eccccccccChhhHhhcCceEEEcceeEEeeccccE---EEe--CCC-ceeecceEEEeecC
Confidence 344455555555666666689999999999988773 444 567 68999999999876
No 278
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=41.72 E-value=77 Score=29.72 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=28.5
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
+.+++++++|++|+. . .|++ .+| +.+.+|.||+++....
T Consensus 203 gI~i~~~~~v~~i~~--~---~v~~--~~g-~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 203 EIPYRLNEEIDAING--N---EVTF--KSG-KVEHYDMIIEGVGTHP 241 (438)
T ss_pred CCEEEECCeEEEEeC--C---EEEE--CCC-CEEEeCEEEECcCCCc
Confidence 458999999999962 2 3444 356 3689999999987643
No 279
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=41.21 E-value=28 Score=37.32 Aligned_cols=47 Identities=9% Similarity=0.195 Sum_probs=32.3
Q ss_pred ccceeeCceeeeEEEcC-----C----CcEEEEEECC---CCe-EEEecCEEEEcCCchH
Q 021616 68 GSKVKLSWKLSGVKKLD-----S----GEYSLTYETP---EGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~-----~----~~~~v~~~~~---~g~-~~~~ad~VI~a~p~~~ 114 (310)
+.+|+++++|+++..++ + .++.|.+.+. +|+ ..+.|+.||+||--..
T Consensus 561 gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~ 620 (1167)
T PTZ00306 561 RVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFS 620 (1167)
T ss_pred CcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcc
Confidence 45899999999999864 1 1233444333 553 3689999999987644
No 280
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=40.71 E-value=44 Score=31.44 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=25.2
Q ss_pred CCCCeEEeecccCCCchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~~~l 304 (310)
..+||||||+-..-.|-..|+.+|..|+..+...+
T Consensus 329 ~~~~l~~AGqi~g~~Gy~ea~a~G~~Ag~n~~~~~ 363 (436)
T PRK05335 329 KRPNLFFAGQITGVEGYVESAASGLLAGINAARLA 363 (436)
T ss_pred CCCCEEeeeeecCchHHHHHHHHHHHHHHHHHHHh
Confidence 45899999997643355678888887777665544
No 281
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=40.15 E-value=1e+02 Score=28.41 Aligned_cols=61 Identities=10% Similarity=-0.002 Sum_probs=38.2
Q ss_pred hHHHHHHHHHh---ccceeeCceeeeEEE-cCCCcEEEEEECCCCe-EEEecCEEEEcCCchH-HHhcc
Q 021616 57 TMLPEAISKRL---GSKVKLSWKLSGVKK-LDSGEYSLTYETPEGL-VSLRSRSVVMTVPSYV-ASSLL 119 (310)
Q Consensus 57 ~~L~~~L~~~l---~~~i~~~~~V~~I~~-~~~~~~~v~~~~~~g~-~~~~ad~VI~a~p~~~-~~~ll 119 (310)
..|.+.|.+.+ +..+++++.+..+.. ++++ +.|++. .+|+ .++++|.||-|--... +.+.+
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~-~~g~~~~i~adlvIGADG~~S~VR~~l 169 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFE-RDGERHRLDCDFIAGCDGFHGVSRASI 169 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEE-ECCeEEEEEeCEEEECCCCchhhHHhc
Confidence 34555555543 347899998888865 4443 677763 2553 3689999998866644 33434
No 282
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=40.00 E-value=37 Score=33.30 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=27.4
Q ss_pred CCCCeEEeecccC----------CCchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYVA----------GVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~~----------g~gv~~ai~sG~~aA~~i~~~l 304 (310)
+.+|||-||+... |.++..|+.+|+.|++.+.+..
T Consensus 526 pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~ 570 (584)
T PRK12835 526 VIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVV 570 (584)
T ss_pred CccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhh
Confidence 5789999997521 2347889999999999987764
No 283
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=39.50 E-value=35 Score=33.38 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=27.6
Q ss_pred CCCCeEEeeccc---------C-CCchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV---------A-GVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~---------~-g~gv~~ai~sG~~aA~~i~~~l 304 (310)
+.+|||-||+.. . |.++..|+.+|+.|++.+.+..
T Consensus 523 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 567 (574)
T PRK12842 523 PIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVA 567 (574)
T ss_pred CcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhh
Confidence 578999999742 1 3457889999999999997654
No 284
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=39.31 E-value=41 Score=35.28 Aligned_cols=36 Identities=11% Similarity=0.190 Sum_probs=29.6
Q ss_pred CCCCeEEeecccCCC-chhHHHHHHHHHHHHHHHHhh
Q 021616 270 GYQGLFLGGNYVAGV-ALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~-gv~~ai~sG~~aA~~i~~~l~ 305 (310)
..++||.+||...|. .+-.|+..|+.||..|+..+.
T Consensus 806 s~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 806 SLTNVYMIGDVQRGPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhcC
Confidence 358999999987654 367899999999999987654
No 285
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=39.31 E-value=1.3e+02 Score=29.68 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=37.9
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcE-EEEE-ECCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEY-SLTY-ETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~-~v~~-~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|+..|.+.. +.+|.+++.|+++..+++|++ .|.. +..+|+ ..+.|+.||+||-...
T Consensus 144 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 144 ALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 3666776544 347999999999988644422 3332 223553 3578999999987754
No 286
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=39.09 E-value=1.3e+02 Score=29.71 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=37.4
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCc-EEEEE-ECCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGE-YSLTY-ETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~-~~v~~-~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|.+.|.+.. +.++..++.|.++..+++|. +.|.. +..+|. ..+.++.||+|+-...
T Consensus 149 ~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 149 ALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 3666665543 45899999999998764432 33433 234553 3578999999987644
No 287
>PRK09077 L-aspartate oxidase; Provisional
Probab=38.67 E-value=88 Score=30.32 Aligned_cols=66 Identities=9% Similarity=-0.003 Sum_probs=39.2
Q ss_pred eeeccchhh-HHHHHHHHHh----ccceeeCceeeeEEEcC------CCcEEEEEE-CCCCe-EEEecCEEEEcCCchH
Q 021616 49 VGSFRKGLT-MLPEAISKRL----GSKVKLSWKLSGVKKLD------SGEYSLTYE-TPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 49 ~~~~~gG~~-~L~~~L~~~l----~~~i~~~~~V~~I~~~~------~~~~~v~~~-~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.++..+..+ .+...|.+.+ +.+|..++.|..+...+ +..+.|... ..+|+ ..+.++.||+|+-...
T Consensus 129 ~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 129 ILHAADATGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred eEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 344433333 3555555543 24899999999987653 322334332 23443 3689999999987644
No 288
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=37.71 E-value=1.4e+02 Score=25.71 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=35.9
Q ss_pred HHHHHHHHH---hccceeeCceeeeEEEcCCC--cEEEEEECC----CC----eEEEecCEEEEcCCch
Q 021616 58 MLPEAISKR---LGSKVKLSWKLSGVKKLDSG--EYSLTYETP----EG----LVSLRSRSVVMTVPSY 113 (310)
Q Consensus 58 ~L~~~L~~~---l~~~i~~~~~V~~I~~~~~~--~~~v~~~~~----~g----~~~~~ad~VI~a~p~~ 113 (310)
.+.+.|.+. .+.++..++.|+.|...+++ ...|.+... +| ..++.++.||.|+...
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 455555544 35689999999999887662 122332110 11 2478999999999853
No 289
>PLN02852 ferredoxin-NADP+ reductase
Probab=37.34 E-value=38 Score=32.49 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=30.4
Q ss_pred CCCCeEEeecccCCCc--hhHHHHHHHHHHHHHHHHhhh
Q 021616 270 GYQGLFLGGNYVAGVA--LGRCVESAYEVASEVSNFLSQ 306 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g--v~~ai~sG~~aA~~i~~~l~~ 306 (310)
..+|||.+||-..|.. +..++..|..+|+.|++.+..
T Consensus 385 ~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 385 TEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred CCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHHc
Confidence 4689999999876643 678899999999999988754
No 290
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=36.94 E-value=1.4e+02 Score=28.53 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=36.2
Q ss_pred chhhHHHHHHHHHhc---cceeeCceeeeEEEcCCC---c-EEEEEECCCCe-EEE---ecCEEEEcC
Q 021616 54 KGLTMLPEAISKRLG---SKVKLSWKLSGVKKLDSG---E-YSLTYETPEGL-VSL---RSRSVVMTV 110 (310)
Q Consensus 54 gG~~~L~~~L~~~l~---~~i~~~~~V~~I~~~~~~---~-~~v~~~~~~g~-~~~---~ad~VI~a~ 110 (310)
+=+.+|+.-|.+.|. +++++|++|+.|+...++ + -.+.+. .+|. +++ .-|.|++|.
T Consensus 204 NQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~-~~g~~~~i~l~~~DlV~vT~ 270 (500)
T PF06100_consen 204 NQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE-QDGKEETIDLGPDDLVFVTN 270 (500)
T ss_pred ccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE-cCCCeeEEEeCCCCEEEEEC
Confidence 347788888888874 589999999999876432 1 133443 3442 233 346777763
No 291
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=36.79 E-value=51 Score=31.08 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=26.9
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~ 302 (310)
..++||.+||...+.. .+-|+..|+.+|+.|..
T Consensus 294 ~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~ 327 (450)
T TIGR01421 294 NVPGIYALGDVVGKVELTPVAIAAGRKLSERLFN 327 (450)
T ss_pred CCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhc
Confidence 4689999999865443 57899999999999874
No 292
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=36.28 E-value=99 Score=29.76 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=30.6
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEEC-CCCe-EEEecCEEEEcCCch
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYET-PEGL-VSLRSRSVVMTVPSY 113 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~-~~g~-~~~~ad~VI~a~p~~ 113 (310)
+.++++++.|++|...++....+.+.+ .+|+ +++.+|.|++++...
T Consensus 401 gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~ 448 (517)
T PRK15317 401 NVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLV 448 (517)
T ss_pred CcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCc
Confidence 348999999999987654322344432 2332 468999999987653
No 293
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=36.14 E-value=1.2e+02 Score=29.68 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=36.8
Q ss_pred HHHHHHHHHh----ccceeeCceeeeEEEcCCCcEEEE-EECCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL----GSKVKLSWKLSGVKKLDSGEYSLT-YETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l----~~~i~~~~~V~~I~~~~~~~~~v~-~~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|.+.|.+.+ +.++..++.|++|..+++....+. ++..+|+ ..+.|+.||+|+-...
T Consensus 133 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 133 HMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 3666666543 237888999999987655322232 2223553 3688999999987643
No 294
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=36.04 E-value=95 Score=28.20 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=36.4
Q ss_pred hHHHHHHHHHh---ccceeeCceeeeEEEcCCCcEE--EEEECCCCeEEEecCEEEEcCCchH
Q 021616 57 TMLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYS--LTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 57 ~~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~--v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
..+.+.+.+.+ +.++++++.|.+|+...+.... +.. .++ ..+.+|.++++++..-
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~--~~~-~~~~~d~~~~~~g~~p 237 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVG--IDG-EEIKADLVIIGPGERP 237 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEE--eCC-cEEEeeEEEEeecccc
Confidence 34444444444 3469999999999988764121 232 455 4789999999987633
No 295
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=35.84 E-value=36 Score=33.03 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=30.2
Q ss_pred cceeeCceeeeEEEcCCCcEEEEEE--CC-------------CCeEEEecCEEEEcCCchH
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTYE--TP-------------EGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~~--~~-------------~g~~~~~ad~VI~a~p~~~ 114 (310)
.+|+++++++++..+++.++-|... .. ++...+.|+.||+||--..
T Consensus 167 v~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~ 227 (549)
T PRK12834 167 VRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIG 227 (549)
T ss_pred ceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcc
Confidence 5899999999998765432234321 11 1224678999999976533
No 296
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=35.30 E-value=46 Score=31.14 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=26.2
Q ss_pred CCCCeEEeecccC----------CCchhHHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVA----------GVALGRCVESAYEVASEVSNF 303 (310)
Q Consensus 270 ~~~~l~~aG~~~~----------g~gv~~ai~sG~~aA~~i~~~ 303 (310)
+.+|||-||+... |.++..|+..|+.|++.+.+.
T Consensus 386 ~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 386 APDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred CCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 5689999997421 345788999999999988654
No 297
>PRK06116 glutathione reductase; Validated
Probab=34.78 E-value=56 Score=30.72 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=26.8
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~ 302 (310)
..++||.+||-..+.. ...|+.+|+.+|+.|..
T Consensus 294 s~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 294 NVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhC
Confidence 4689999999765433 57899999999999875
No 298
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=34.54 E-value=42 Score=32.84 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=25.8
Q ss_pred CCCCeEEeecccC----------CCchhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVA----------GVALGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~----------g~gv~~ai~sG~~aA~~i~~ 302 (310)
+.+|||-||+... |.++..|+.+|+.|++.+.+
T Consensus 521 pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 521 VIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 5789999997521 34578899999999998754
No 299
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=34.22 E-value=38 Score=33.20 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=27.3
Q ss_pred CCCCeEEeeccc----------CCCchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV----------AGVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~----------~g~gv~~ai~sG~~aA~~i~~~l 304 (310)
+.+|||-||+-. .|.++..|+.+|+.|++.+.+.+
T Consensus 527 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 571 (581)
T PRK06134 527 PIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGAS 571 (581)
T ss_pred CcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcC
Confidence 578999999631 13457889999999999997654
No 300
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=34.15 E-value=49 Score=32.11 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=27.0
Q ss_pred CCCCeEEeecccC---------CCchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYVA---------GVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~~---------g~gv~~ai~sG~~aA~~i~~~l 304 (310)
+.+|||-||+-.. |.++.+|+.+|+.|++.+.+..
T Consensus 360 ~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 360 NIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred cCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 5799999998532 2346789999999999987654
No 301
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=34.08 E-value=41 Score=32.77 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=25.9
Q ss_pred CCCCeEEeecccC----------CCchhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVA----------GVALGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~----------g~gv~~ai~sG~~aA~~i~~ 302 (310)
+.+|||-||+-.. |.++..|+.+|+.|++.+.+
T Consensus 513 pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~ 555 (557)
T PRK07843 513 VIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAA 555 (557)
T ss_pred CcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhh
Confidence 5789999988531 33467899999999998864
No 302
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=33.97 E-value=41 Score=32.89 Aligned_cols=34 Identities=15% Similarity=0.356 Sum_probs=26.4
Q ss_pred CCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 271 YQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 271 ~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
.+|||-||+-. +| .++-+|+.+|+.|++.+.+..
T Consensus 371 I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~ 414 (577)
T PRK06069 371 VRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYA 414 (577)
T ss_pred eCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 68999999963 22 347789999999999887654
No 303
>PLN02661 Putative thiazole synthesis
Probab=33.63 E-value=1.3e+02 Score=27.46 Aligned_cols=44 Identities=7% Similarity=-0.076 Sum_probs=28.8
Q ss_pred cceeeCceeeeEEEcCCCcEEEEEE------CC-CC----eEEEecCEEEEcCCc
Q 021616 69 SKVKLSWKLSGVKKLDSGEYSLTYE------TP-EG----LVSLRSRSVVMTVPS 112 (310)
Q Consensus 69 ~~i~~~~~V~~I~~~~~~~~~v~~~------~~-~g----~~~~~ad~VI~a~p~ 112 (310)
.++..++.|..+..+++....|.+. .. ++ ...+.|++||+||-.
T Consensus 188 VkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 188 VKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred CEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 4899999999998876532223321 11 11 136899999999873
No 304
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=33.35 E-value=55 Score=32.30 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=26.4
Q ss_pred HHhhhcCCCCeEEeecccCCCchhHHHHHHHHHHHHHHH
Q 021616 264 SSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSN 302 (310)
Q Consensus 264 ~~~~~~~~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~~ 302 (310)
..++....+||||||+-....|.+.|..+|..|+-.+..
T Consensus 350 ~~le~k~~~gLf~AGqi~Gt~Gy~eAaa~Gl~Ag~naa~ 388 (617)
T TIGR00136 350 PTLETKLIQGLFFAGQINGTTGYEEAAAQGLMAGINAAL 388 (617)
T ss_pred hhheeCCCCCeEEccccCCcchHHHHHHHHHHHHHHHHH
Confidence 445443468999999965445678888887777655543
No 305
>PRK08401 L-aspartate oxidase; Provisional
Probab=33.35 E-value=1.3e+02 Score=28.43 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=33.5
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
.+.+.|.+.+ +.++..+ .|+.|..+++..+.+.. +| +.+.++.||+|+-...
T Consensus 121 ~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~---~g-~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 121 HIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL---DG-ELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE---CC-EEEEeCeEEECCCcCc
Confidence 4666666554 3467665 78888765543123433 45 4789999999987744
No 306
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=32.86 E-value=62 Score=30.68 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=27.8
Q ss_pred CCCCeEEeecccCCCch-hHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVAL-GRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~gv-~~ai~sG~~aA~~i~~ 302 (310)
..++||-|||...+..+ .-|...|+.||+.|+.
T Consensus 301 nvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 301 NVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred CCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 46899999999776655 6789999999999985
No 307
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=32.61 E-value=52 Score=32.32 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=26.8
Q ss_pred CCCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
+.+|||-||+-. +| .++.+|+..|+.|++.+.+.+
T Consensus 379 ~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 423 (588)
T PRK08958 379 VVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESL 423 (588)
T ss_pred ccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 479999999952 22 346789999999999887654
No 308
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=32.11 E-value=1.3e+02 Score=30.23 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=31.2
Q ss_pred hccceeeCceeeeEEEcCCC-cEEEEEEC-C----CC-------eEEEecCEEEEcCCchH
Q 021616 67 LGSKVKLSWKLSGVKKLDSG-EYSLTYET-P----EG-------LVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 67 l~~~i~~~~~V~~I~~~~~~-~~~v~~~~-~----~g-------~~~~~ad~VI~a~p~~~ 114 (310)
.+.+|++++.|++|+..+++ .+.+.+.+ . ++ .+++++|.||+++-...
T Consensus 367 ~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~P 427 (659)
T PTZ00153 367 KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKP 427 (659)
T ss_pred CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECccc
Confidence 34589999999999876543 14444321 1 11 12689999999976543
No 309
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=32.08 E-value=54 Score=32.21 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=35.1
Q ss_pred HHHHHHHHhc-------cceeeCceeeeEEEcCCCc-EEEEEEC-CCCe-EEEecCEEEEcCCchH
Q 021616 59 LPEAISKRLG-------SKVKLSWKLSGVKKLDSGE-YSLTYET-PEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 59 L~~~L~~~l~-------~~i~~~~~V~~I~~~~~~~-~~v~~~~-~~g~-~~~~ad~VI~a~p~~~ 114 (310)
|...|.+.+. .++..++.+.++...++|. +.|...+ .+|+ ..+.|+.||+||-...
T Consensus 135 i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 135 LLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 5556654431 2578899999998764442 2333322 2343 3578999999987754
No 310
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=32.00 E-value=57 Score=32.34 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=26.8
Q ss_pred CCCCeEEeeccc---C------CCchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV---A------GVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~---~------g~gv~~ai~sG~~aA~~i~~~l 304 (310)
..+|||.||+-. + |.++.+|+..|+.|++.+.+..
T Consensus 404 ~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~ 447 (626)
T PRK07803 404 TVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYV 447 (626)
T ss_pred ecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHh
Confidence 469999999853 2 2357889999999998876653
No 311
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=31.84 E-value=1.5e+02 Score=29.46 Aligned_cols=56 Identities=9% Similarity=0.170 Sum_probs=36.6
Q ss_pred HHHHHHHHh---ccceeeCceeeeEEEcCCCcE-EEEE-ECCCCe-EEEecCEEEEcCCchH
Q 021616 59 LPEAISKRL---GSKVKLSWKLSGVKKLDSGEY-SLTY-ETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 59 L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~-~v~~-~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
|++.|.+.+ +.+|..++.+.+|..+++|.+ .|.. +..+|+ ..+.|+.||+||-...
T Consensus 189 i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 189 MLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 555665543 358999999999887643323 3333 223553 3679999999988754
No 312
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=31.69 E-value=81 Score=30.68 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=35.1
Q ss_pred ceeeCceeeeEEEcCCCcEEEEEECCCC---eEEEecCEEEEcCCchHHHhc
Q 021616 70 KVKLSWKLSGVKKLDSGEYSLTYETPEG---LVSLRSRSVVMTVPSYVASSL 118 (310)
Q Consensus 70 ~i~~~~~V~~I~~~~~~~~~v~~~~~~g---~~~~~ad~VI~a~p~~~~~~l 118 (310)
+|.+++.|++|..+++..+.|++...++ +..+.++.||+++-.-....|
T Consensus 219 ~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~L 270 (542)
T COG2303 219 TLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKL 270 (542)
T ss_pred EEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHH
Confidence 8999999999999988645555543333 234678899999777555554
No 313
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=31.64 E-value=1.7e+02 Score=28.41 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=36.7
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECC-CC-eEEEecCEEEEcCCchHH
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETP-EG-LVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~-~g-~~~~~ad~VI~a~p~~~~ 115 (310)
+.++.+.++|+++...++ .|.|.+.+. +| +..+.|+.||-|+-+++-
T Consensus 178 Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d 226 (532)
T COG0578 178 GAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD 226 (532)
T ss_pred ccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence 458999999999999988 577776432 23 246899999999988664
No 314
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=31.59 E-value=1.3e+02 Score=28.45 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=26.3
Q ss_pred CCCCeEEeecccCCC-chhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGV-ALGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~-gv~~ai~sG~~aA~~i~~ 302 (310)
..++||.+||...+. ....|...|..||+.|..
T Consensus 313 s~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 313 NVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcC
Confidence 468999999986543 356789999999999864
No 315
>PRK12839 hypothetical protein; Provisional
Probab=31.23 E-value=51 Score=32.28 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=26.7
Q ss_pred CCCCeEEeeccc----------CCCchhHHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYV----------AGVALGRCVESAYEVASEVSNF 303 (310)
Q Consensus 270 ~~~~l~~aG~~~----------~g~gv~~ai~sG~~aA~~i~~~ 303 (310)
+.+|||-||+.. .|.++..|+.+|+.|++.+.+.
T Consensus 524 pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~ 567 (572)
T PRK12839 524 PIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGS 567 (572)
T ss_pred CcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhc
Confidence 578999999732 1345788999999999998653
No 316
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=31.07 E-value=51 Score=33.08 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=31.3
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
+-++++++.++.|...+. ...+.+ +|| ..+.||-||+++-.
T Consensus 201 Gi~~~l~~~t~ei~g~~~-~~~vr~--~DG-~~i~ad~VV~a~GI 241 (793)
T COG1251 201 GIKVLLEKNTEEIVGEDK-VEGVRF--ADG-TEIPADLVVMAVGI 241 (793)
T ss_pred cceeecccchhhhhcCcc-eeeEee--cCC-CcccceeEEEeccc
Confidence 458999999999887433 356665 788 47999999999754
No 317
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=30.98 E-value=60 Score=28.73 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=26.4
Q ss_pred CCeEEeeccc------CCCchhHHHHHHHHHHHHHHHHh
Q 021616 272 QGLFLGGNYV------AGVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 272 ~~l~~aG~~~------~g~gv~~ai~sG~~aA~~i~~~l 304 (310)
+++.++||.. .|-|++.|+.+|..+|+.|...+
T Consensus 291 grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~ 329 (356)
T PF01494_consen 291 GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAAL 329 (356)
T ss_dssp TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHh
Confidence 6899999984 36678999999999998887654
No 318
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=30.36 E-value=1.7e+02 Score=26.04 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=29.8
Q ss_pred CCCCeEEeecccCCC--chhHHHHHHHHHHHHHHHHhhhc
Q 021616 270 GYQGLFLGGNYVAGV--ALGRCVESAYEVASEVSNFLSQY 307 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~--gv~~ai~sG~~aA~~i~~~l~~~ 307 (310)
..+|||.|||-.... -+..++-.|..||..+.+.+.+.
T Consensus 264 svpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 264 SVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred CCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhhc
Confidence 579999999986543 36778888889998888777654
No 319
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=30.12 E-value=59 Score=31.90 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=26.8
Q ss_pred CCCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
+.+|||-||+-. +| .++-+|+..|+.|++.+.+..
T Consensus 370 ~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 414 (582)
T PRK09231 370 RIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERA 414 (582)
T ss_pred ccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhh
Confidence 579999999853 22 347789999999999887654
No 320
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=30.06 E-value=88 Score=29.19 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=27.7
Q ss_pred CCCCeEEeecccCC------CchhHHHHHHHHHHHHHHHHhh
Q 021616 270 GYQGLFLGGNYVAG------VALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 270 ~~~~l~~aG~~~~g------~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
.+++||.+||.... ....-|+.+|..+|+.|...+.
T Consensus 307 ~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 307 PIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred CCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 46899999997531 1235689999999999988774
No 321
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=29.94 E-value=1.5e+02 Score=28.02 Aligned_cols=46 Identities=7% Similarity=0.008 Sum_probs=29.0
Q ss_pred hccceeeCceeeeEEEcCCCcEEEEEEC----------------CCCeEEEecCEEEEcCCc
Q 021616 67 LGSKVKLSWKLSGVKKLDSGEYSLTYET----------------PEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 67 l~~~i~~~~~V~~I~~~~~~~~~v~~~~----------------~~g~~~~~ad~VI~a~p~ 112 (310)
.+.++++++.|.+|..++++...|++.. .+.++++.+|.||+++..
T Consensus 324 ~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 385 (457)
T PRK11749 324 EGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385 (457)
T ss_pred CCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC
Confidence 3458999999999986654311232210 112246899999998765
No 322
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.91 E-value=69 Score=31.33 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=26.8
Q ss_pred CCCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
..+|||-||+-. +| .++-+|+.+|+.|++.+.+.+
T Consensus 361 ~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 405 (570)
T PRK05675 361 IIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKAL 405 (570)
T ss_pred ccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHHHH
Confidence 479999999952 22 347889999999999886554
No 323
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.83 E-value=73 Score=31.16 Aligned_cols=35 Identities=20% Similarity=0.446 Sum_probs=27.0
Q ss_pred CCCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
..+|||-||+-. +| .++-+|+.+|+.|++.+.+..
T Consensus 369 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 413 (575)
T PRK05945 369 LVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIAEYV 413 (575)
T ss_pred ccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 469999999953 22 347889999999999887543
No 324
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.50 E-value=2.1e+02 Score=28.09 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=26.7
Q ss_pred CCCCeEEeeccc---C------CCchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV---A------GVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~---~------g~gv~~ai~sG~~aA~~i~~~l 304 (310)
..+|||-||+-. + |.++-+|+..|+.|++.+.+.+
T Consensus 367 ~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~ 410 (589)
T PRK08641 367 NIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYI 410 (589)
T ss_pred ECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 479999999953 2 2347789999999998876553
No 325
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=29.48 E-value=73 Score=29.93 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=26.9
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~ 302 (310)
..++||.+||-..+.. ...|+..|+.+|+.|..
T Consensus 292 s~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 292 SIPSIYAVGDVTDRINLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CCCCEEEeeccCCCccchhHHHHHHHHHHHHHhc
Confidence 4689999999876544 46789999999999874
No 326
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=29.34 E-value=67 Score=31.37 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=27.0
Q ss_pred CCCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
+.+|||-||+-. +| .++-+|+.+|+.|++.+.+..
T Consensus 352 ~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~ 396 (565)
T TIGR01816 352 IVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYA 396 (565)
T ss_pred ccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhh
Confidence 479999999963 22 247789999999999887654
No 327
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=28.83 E-value=1.3e+02 Score=29.88 Aligned_cols=41 Identities=12% Similarity=0.323 Sum_probs=29.1
Q ss_pred ceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchH
Q 021616 70 KVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYV 114 (310)
Q Consensus 70 ~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~ 114 (310)
++ +.+.|..|..+++....|.+ .+| ..+.|+.||+|+-...
T Consensus 117 ~I-~q~~V~~Li~e~grV~GV~t--~dG-~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 117 DL-FQGEVEDLIVENGRVVGVVT--QDG-LEFRAKAVVLTTGTFL 157 (618)
T ss_pred EE-EEeEEEEEEecCCEEEEEEE--CCC-CEEECCEEEEeeCcch
Confidence 44 56788888877664233554 567 4799999999988644
No 328
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=28.48 E-value=2.1e+02 Score=27.18 Aligned_cols=45 Identities=7% Similarity=0.009 Sum_probs=28.9
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEE---CC--------CCeEEEecCEEEEcCCc
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYE---TP--------EGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~---~~--------~g~~~~~ad~VI~a~p~ 112 (310)
+.++++++.+++|...++....|.+. .. +.++++.+|.||+++-.
T Consensus 343 GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 343 GVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred CCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 45899999999997544431223321 11 22247899999999864
No 329
>PRK08818 prephenate dehydrogenase; Provisional
Probab=28.29 E-value=30 Score=31.80 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=36.5
Q ss_pred eccchhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCC
Q 021616 51 SFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRP 121 (310)
Q Consensus 51 ~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~ 121 (310)
.+-|+.|.|=..|+..+... .+..|..++..+++ +. ...+..-.+|.||+|+|......++..
T Consensus 8 ~IIGl~GliGgslA~alk~~--~~~~V~g~D~~d~~-~~-----~~~~~v~~aDlVilavPv~~~~~~l~~ 70 (370)
T PRK08818 8 GIVGSAGAYGRWLARFLRTR--MQLEVIGHDPADPG-SL-----DPATLLQRADVLIFSAPIRHTAALIEE 70 (370)
T ss_pred EEECCCCHHHHHHHHHHHhc--CCCEEEEEcCCccc-cC-----CHHHHhcCCCEEEEeCCHHHHHHHHHH
Confidence 34444355555555555433 26667777654432 11 111113479999999999998777653
No 330
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=28.20 E-value=76 Score=31.28 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=27.4
Q ss_pred CCCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
+.+|||-||+-. +| .++-+|+..|+.|++.+.+.+
T Consensus 384 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 428 (598)
T PRK09078 384 VVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVI 428 (598)
T ss_pred ccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 479999999953 22 357789999999999887654
No 331
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=27.84 E-value=49 Score=31.85 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=25.7
Q ss_pred CCCCeEEeecccC----------CCchhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVA----------GVALGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~----------g~gv~~ai~sG~~aA~~i~~ 302 (310)
+.+|||-||+-.. |.++..|+..|+.|++.+..
T Consensus 468 pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 468 PIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred EeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 5689999998521 33478899999999998854
No 332
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=27.82 E-value=72 Score=31.10 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=27.2
Q ss_pred CCCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
..+|||-||+-. +| .++-+|+.+|+.|++.+.+.+
T Consensus 358 ~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~ 402 (566)
T TIGR01812 358 IVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYA 402 (566)
T ss_pred ccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 579999999953 22 357789999999999887654
No 333
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=27.75 E-value=71 Score=31.29 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=26.6
Q ss_pred CCCCeEEeecccC----------CCchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYVA----------GVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~~----------g~gv~~ai~sG~~aA~~i~~~l 304 (310)
+.+|||-||+... |.++..|+..|+.|++.+.+..
T Consensus 528 pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 572 (578)
T PRK12843 528 PISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRT 572 (578)
T ss_pred CcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhh
Confidence 5789999996421 2346789999999999987654
No 334
>PRK06175 L-aspartate oxidase; Provisional
Probab=27.35 E-value=67 Score=30.15 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=26.4
Q ss_pred CCCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNF 303 (310)
Q Consensus 270 ~~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~ 303 (310)
+.+|||-||+-. +| .++-.|+..|++|++.+...
T Consensus 343 ~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~ 386 (433)
T PRK06175 343 SMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSE 386 (433)
T ss_pred cCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHh
Confidence 579999999963 22 34778999999999998653
No 335
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=27.06 E-value=18 Score=32.44 Aligned_cols=71 Identities=10% Similarity=0.017 Sum_probs=44.6
Q ss_pred CCCCceeeeccc-hhhHHHHH---HHHHhcc-ceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHh
Q 021616 43 KPKGQTVGSFRK-GLTMLPEA---ISKRLGS-KVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASS 117 (310)
Q Consensus 43 ~~~~~~~~~~~g-G~~~L~~~---L~~~l~~-~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ 117 (310)
..=.+..|++.| |+.+|-.. +++-++. ..-....|++++.+++. |.+ .+| ++|.+|++|+|+-...--.
T Consensus 75 ~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~P~~N~---v~t--~gg-~eIsYdylviA~Giql~y~ 148 (446)
T KOG3851|consen 75 DHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFNPDKNT---VVT--RGG-EEISYDYLVIAMGIQLDYG 148 (446)
T ss_pred hcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhcCCCcCe---EEc--cCC-cEEeeeeEeeeeeceeccc
Confidence 334455688877 58887753 3333432 22233788888888773 332 566 5899999999988765433
Q ss_pred cc
Q 021616 118 LL 119 (310)
Q Consensus 118 ll 119 (310)
.+
T Consensus 149 ~I 150 (446)
T KOG3851|consen 149 KI 150 (446)
T ss_pred hh
Confidence 33
No 336
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=26.81 E-value=2.1e+02 Score=28.34 Aligned_cols=42 Identities=10% Similarity=0.286 Sum_probs=28.3
Q ss_pred ceeeCceeeeEEEc-CCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 70 KVKLSWKLSGVKKL-DSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 70 ~i~~~~~V~~I~~~-~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
.+ +...|+.+... ++..+.|.+ .+| ..+.||.||+|+-...-
T Consensus 113 ~I-le~~Vv~li~e~~g~V~GV~t--~~G-~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 113 SL-FQGEVEDLILEDNDEIKGVVT--QDG-LKFRAKAVIITTGTFLR 155 (617)
T ss_pred EE-EEeEEEEEEEecCCcEEEEEE--CCC-CEEECCEEEEccCcccC
Confidence 45 44577777665 443344554 567 47999999999988753
No 337
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=26.67 E-value=79 Score=30.78 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=28.2
Q ss_pred CCCCeEEeecccC-C-CchhHHHHHHHHHHHHHHHHhh
Q 021616 270 GYQGLFLGGNYVA-G-VALGRCVESAYEVASEVSNFLS 305 (310)
Q Consensus 270 ~~~~l~~aG~~~~-g-~gv~~ai~sG~~aA~~i~~~l~ 305 (310)
..++||.+||-.. + ..+..|+..|..||..|.+.+.
T Consensus 272 s~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~ 309 (555)
T TIGR03143 272 NVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVK 309 (555)
T ss_pred CCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHH
Confidence 3589999999743 2 2367799999999999987764
No 338
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=26.53 E-value=1.2e+02 Score=28.64 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=22.8
Q ss_pred HHHhhhcCCCCeEEeecccCCCchhHHHHHHHHHHHHHH
Q 021616 263 KSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVS 301 (310)
Q Consensus 263 ~~~~~~~~~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~ 301 (310)
...++....++|||||.-.+-.|=++|..+|..|+-...
T Consensus 321 ~~~l~~k~~~~lf~AGQi~G~~GY~Eaaa~Gl~agina~ 359 (433)
T TIGR00137 321 TASLHFKDRQTLFFAGQLTGVEGYVASTAGGWLAGINAA 359 (433)
T ss_pred hHHhccCCCCCEEECcccccchHHHHHHHHHHHHHHHHH
Confidence 344443346899999987543444556555555544433
No 339
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=26.24 E-value=74 Score=30.38 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=26.6
Q ss_pred CCCCeEEeeccc----C------CCchhHHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYV----A------GVALGRCVESAYEVASEVSNF 303 (310)
Q Consensus 270 ~~~~l~~aG~~~----~------g~gv~~ai~sG~~aA~~i~~~ 303 (310)
+.+|||-||+.. + |.++.+|+..|+.|++.+.+.
T Consensus 345 ~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 345 TVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred cCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 579999999962 2 234778999999999998754
No 340
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=24.71 E-value=2.4e+02 Score=27.24 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=27.1
Q ss_pred CCCeEEeecccCCCchhHHHHHHHHHHHHHHHHh
Q 021616 271 YQGLFLGGNYVAGVALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 271 ~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~~~l 304 (310)
.+|||+||-...--.+.+++.+|..||.+..+.+
T Consensus 511 ~~GIflAG~aqgPkdI~~siaqa~aAA~kA~~~l 544 (622)
T COG1148 511 RDGIFLAGAAQGPKDIADSIAQAKAAAAKAAQLL 544 (622)
T ss_pred CCcEEEeecccCCccHHHHHHHhHHHHHHHHHHh
Confidence 4799999987544568999999999998876654
No 341
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=24.44 E-value=2.1e+02 Score=27.84 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=29.8
Q ss_pred ccceeeCceeeeEEEcCCCcEEEE---EE----CC-------CC-eEEEecCEEEEcCCch
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLT---YE----TP-------EG-LVSLRSRSVVMTVPSY 113 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~---~~----~~-------~g-~~~~~ad~VI~a~p~~ 113 (310)
+.+|++++.+.+|..++++.+.+. +. ++ .| +.++.+|.||+++...
T Consensus 319 GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~ 379 (564)
T PRK12771 319 GVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD 379 (564)
T ss_pred CCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC
Confidence 348999999999987665432222 11 11 12 2478999999998754
No 342
>PF14443 DBC1: DBC1
Probab=24.27 E-value=1.6e+02 Score=22.53 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=27.6
Q ss_pred EEecCCCCCCCCCC----CHHHHHHHHHHHHHHHhCCCC
Q 021616 198 NYIGGATNLGILSK----KESELVEAVDRDLRKMLINPN 232 (310)
Q Consensus 198 ~~~~g~~~~~~~~~----~~eel~~~~~~~l~~~~~~~~ 232 (310)
.-+||.|++.+.+. ++.-+++.+++..+.+.|++-
T Consensus 20 ~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDL 58 (126)
T PF14443_consen 20 MAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDL 58 (126)
T ss_pred EecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccch
Confidence 45688898887543 457899999999999998763
No 343
>PLN02985 squalene monooxygenase
Probab=24.22 E-value=3e+02 Score=26.55 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=32.6
Q ss_pred HHHHHHHHHhc----cceeeCceeeeEEEcCCCcEEEEEECCCCe-EEEecCEEEEcCCchH
Q 021616 58 MLPEAISKRLG----SKVKLSWKLSGVKKLDSGEYSLTYETPEGL-VSLRSRSVVMTVPSYV 114 (310)
Q Consensus 58 ~L~~~L~~~l~----~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~-~~~~ad~VI~a~p~~~ 114 (310)
.|.+.|.+.+. .+++.+ .|.++..+++....|++.+.+|+ .++.||.||.|.-...
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S 208 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYS 208 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCch
Confidence 45666665542 356544 56666655442234555445663 2467999999976643
No 344
>PLN02507 glutathione reductase
Probab=24.16 E-value=1e+02 Score=29.61 Aligned_cols=33 Identities=9% Similarity=0.048 Sum_probs=26.7
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~ 302 (310)
..++||.+||-..+.. ..-|..+|+.+|+.|..
T Consensus 329 s~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 329 NIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred CCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcC
Confidence 5689999999876443 46789999999999864
No 345
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=24.07 E-value=1.1e+02 Score=30.57 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=27.3
Q ss_pred CCCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
+.+|||-||+-. +| .++-+|+..|+.|++.+.+..
T Consensus 422 ~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~ 466 (635)
T PLN00128 422 VVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIA 466 (635)
T ss_pred ccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 479999999953 23 257889999999999887653
No 346
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=23.93 E-value=92 Score=31.11 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=26.4
Q ss_pred CCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 271 YQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 271 ~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
.+|||-||+.. +| .++-+|+..|+.|++.+.+..
T Consensus 386 I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~ 429 (657)
T PRK08626 386 LKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFC 429 (657)
T ss_pred cCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999952 23 347789999999999887654
No 347
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=23.68 E-value=3.3e+02 Score=27.06 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=23.7
Q ss_pred HHHHhhhcCCCCeEEeecccCCCchhHHHHH----HHHHHHHH
Q 021616 262 AKSSLRDNGYQGLFLGGNYVAGVALGRCVES----AYEVASEV 300 (310)
Q Consensus 262 ~~~~~~~~~~~~l~~aG~~~~g~gv~~ai~s----G~~aA~~i 300 (310)
+...++....+||||||.-.+-.|=++|..+ |.+||..+
T Consensus 350 L~~~Le~k~~~~lf~AGQinGt~GYeEaaaqGl~AgiNaa~~~ 392 (618)
T PRK05192 350 LKPTLETKKIKGLFFAGQINGTTGYEEAAAQGLIAGINAALKV 392 (618)
T ss_pred cchhheecCCCCeEECcccCCChHHHHHHHHHHHHHHHHHHHh
Confidence 3445554356899999986544455666444 55555544
No 348
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=23.57 E-value=1e+02 Score=28.87 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=26.2
Q ss_pred CCCeEEeecccCCC-------chhHHHHHHHHHHHHHHHHh
Q 021616 271 YQGLFLGGNYVAGV-------ALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 271 ~~~l~~aG~~~~g~-------gv~~ai~sG~~aA~~i~~~l 304 (310)
.+|||.+|+-+.|. |-.=|+.+|..||++|++..
T Consensus 380 ~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 380 IENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred ccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHhh
Confidence 58999999976543 23347999999999998654
No 349
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=23.47 E-value=1e+02 Score=27.44 Aligned_cols=52 Identities=12% Similarity=0.212 Sum_probs=35.5
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHH
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVA 115 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~ 115 (310)
.|.+.+.+.. +.++.. ..|.+++..++ .+.|.+ ++| ++++++||+|+-...-
T Consensus 62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~-~F~v~t--~~~--~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEGG-PFKVKT--DKG--TYEAKAVIIATGAGAR 116 (305)
T ss_pred HHHHHHHHHHhhcCeEEEE-EEEEEEeecCc-eEEEEE--CCC--eEEEeEEEECcCCccc
Confidence 3666665554 234444 77888877765 478775 677 3999999999887543
No 350
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=23.39 E-value=93 Score=30.82 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=27.2
Q ss_pred CCCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
+.+|||-||+-. +| .++-+|+..|+.|++.+.+..
T Consensus 401 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~~ 445 (617)
T PTZ00139 401 IVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEIL 445 (617)
T ss_pred ccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHhh
Confidence 469999999953 22 357889999999999887653
No 351
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=22.78 E-value=3.5e+02 Score=23.56 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=41.1
Q ss_pred eeccchhhHHHHHHHHHhccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCE-EEEcCCc
Q 021616 50 GSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRS-VVMTVPS 112 (310)
Q Consensus 50 ~~~~gG~~~L~~~L~~~l~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~-VI~a~p~ 112 (310)
.+..+..+++.-.|++.| .+=.-+-|.+|+..+++.+.++-+.++|.+++++.- +|+|+..
T Consensus 120 qa~D~~t~qvg~~lAe~L--g~P~~t~v~~i~~~dg~~v~v~R~le~g~e~~e~~LPaVvtv~~ 181 (260)
T COG2086 120 QAIDGDTGQVGPLLAELL--GWPQVTYVSKIEIVDGGKVTVERELEGGLETVEAPLPAVVTVDL 181 (260)
T ss_pred ccccCCccchHHHHHHHh--CCceeeeEEEEEEcCCCeEEEEEEcCCceEEEEccCCEEEEecc
Confidence 456778999999999999 455566788888644434777655667766666653 3333333
No 352
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=22.75 E-value=2.5e+02 Score=27.29 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=32.6
Q ss_pred HHHHHHHHHh---ccceeeCceeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCc
Q 021616 58 MLPEAISKRL---GSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 58 ~L~~~L~~~l---~~~i~~~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~ 112 (310)
.+.+.+.+.+ +.++ +++.|+.|+..++. +.|.. .+| .+.+|+||+|+-.
T Consensus 61 ~l~~~l~~~~~~~gv~~-~~~~V~~i~~~~~~-~~V~~--~~g--~~~a~~lVlATGa 112 (555)
T TIGR03143 61 ELMQEMRQQAQDFGVKF-LQAEVLDVDFDGDI-KTIKT--ARG--DYKTLAVLIATGA 112 (555)
T ss_pred HHHHHHHHHHHHcCCEE-eccEEEEEEecCCE-EEEEe--cCC--EEEEeEEEECCCC
Confidence 4555554443 3455 47889999886653 66664 455 4789999999854
No 353
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.63 E-value=1.1e+02 Score=28.85 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=26.8
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~ 302 (310)
..++||.+||...+.. ...|+..|+.+|+.|..
T Consensus 300 ~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 300 NVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcC
Confidence 4689999999865443 56789999999999875
No 354
>PRK14727 putative mercuric reductase; Provisional
Probab=22.48 E-value=89 Score=29.71 Aligned_cols=33 Identities=3% Similarity=0.059 Sum_probs=26.5
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~ 302 (310)
..++||.+||-..... +.-|+.+|+.||+.|..
T Consensus 312 s~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 312 SAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTG 345 (479)
T ss_pred CCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcC
Confidence 4689999999865433 56789999999999874
No 355
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=22.26 E-value=1.4e+02 Score=28.54 Aligned_cols=70 Identities=13% Similarity=0.065 Sum_probs=47.9
Q ss_pred CCCCceeeeccchhhH-HHHHHHHHhc----cceeeCceeeeEEEcCCCcE-EEEEECCCC-eEEEecCEEEEcCCc
Q 021616 43 KPKGQTVGSFRKGLTM-LPEAISKRLG----SKVKLSWKLSGVKKLDSGEY-SLTYETPEG-LVSLRSRSVVMTVPS 112 (310)
Q Consensus 43 ~~~~~~~~~~~gG~~~-L~~~L~~~l~----~~i~~~~~V~~I~~~~~~~~-~v~~~~~~g-~~~~~ad~VI~a~p~ 112 (310)
+....++.+..+..+. +..+|.+.+. .+|.-++.+..|..+++..+ .|.+...++ ..++.++.||+|+--
T Consensus 118 gHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 118 GHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred ccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 5556678888887665 5567777664 37888889999988877213 444432332 247889999999765
No 356
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.20 E-value=78 Score=30.04 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=26.4
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~ 302 (310)
..++||.+||...+.. ...|+..|+.+|+.|..
T Consensus 303 ~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 303 NVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred CCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcC
Confidence 4689999999765433 57799999999999874
No 357
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.13 E-value=1.2e+02 Score=29.76 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=26.8
Q ss_pred CCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 271 YQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 271 ~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
.+|||-||+-. +| .++-+|+..|+.|++.+.+.+
T Consensus 360 IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 403 (566)
T PRK06452 360 IVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFL 403 (566)
T ss_pred cCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 79999999953 22 247889999999999887654
No 358
>PRK09077 L-aspartate oxidase; Provisional
Probab=22.08 E-value=1e+02 Score=29.89 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=27.2
Q ss_pred CCCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
..+|||-||+-. +| .++-+|+..|+.|++.+.+..
T Consensus 365 ~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 365 DLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred ccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 479999999953 22 357789999999999987653
No 359
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.04 E-value=1.1e+02 Score=28.81 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=26.5
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~ 302 (310)
..++||.+||-..+.. ...|...|+.||+.|..
T Consensus 302 s~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 302 NVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAG 335 (466)
T ss_pred CCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 4689999999865443 46789999999999874
No 360
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=22.00 E-value=2.9e+02 Score=24.87 Aligned_cols=43 Identities=9% Similarity=0.018 Sum_probs=26.8
Q ss_pred ccceeeCceeeeEEEcCCCcEEEEEE------------------CCCCeEEEecCEEEEcCCc
Q 021616 68 GSKVKLSWKLSGVKKLDSGEYSLTYE------------------TPEGLVSLRSRSVVMTVPS 112 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~~v~~~------------------~~~g~~~~~ad~VI~a~p~ 112 (310)
+.++++++.|.+|+.++. ...|.+. +.++ +.+.+|.||+++..
T Consensus 224 gi~i~~~~~v~~i~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~D~vi~a~G~ 284 (352)
T PRK12770 224 GVEFLELVTPVRIIGEGR-VEGVELAKMRLGEPDESGRPRPVPIPGSE-FVLEADTVVFAIGE 284 (352)
T ss_pred CCEEeeccCceeeecCCc-EeEEEEEEEEecCcCcccCcCceecCCCe-EEEECCEEEECccc
Confidence 457888888888875432 1233321 1122 46899999998765
No 361
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=21.97 E-value=1.3e+02 Score=28.86 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=26.8
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~ 302 (310)
..++||.+||-..+.. +.-|+..|+.+|+.|+.
T Consensus 317 s~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 317 NVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFG 350 (486)
T ss_pred CCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhC
Confidence 4689999999865433 57799999999999874
No 362
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.74 E-value=1.2e+02 Score=29.67 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=26.7
Q ss_pred CCCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
..+|||-||+-. +| .++-+|+..|+.|++.+.+..
T Consensus 374 ~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~ 418 (583)
T PRK08205 374 VVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAEYA 418 (583)
T ss_pred CcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 469999999953 22 247789999999999886553
No 363
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=21.51 E-value=1.2e+02 Score=28.81 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=26.8
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNF 303 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~ 303 (310)
..++||.+||-..+.. ..-|...|+.+|+.|+..
T Consensus 304 s~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 304 SVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGK 338 (466)
T ss_pred CCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 4689999999865543 367899999999998753
No 364
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=21.49 E-value=1.2e+02 Score=28.60 Aligned_cols=33 Identities=6% Similarity=0.087 Sum_probs=26.1
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~ 302 (310)
..++||.+||-..... ...|+.+|+.||..|+.
T Consensus 301 ~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 301 AVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVG 334 (461)
T ss_pred CCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcC
Confidence 4689999999754333 46799999999999874
No 365
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.49 E-value=1e+02 Score=30.25 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=26.6
Q ss_pred CCCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNF 303 (310)
Q Consensus 270 ~~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~ 303 (310)
+.+|||-||+-. +| .++-+|+..|+.|++.+.+.
T Consensus 382 ~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~ 425 (591)
T PRK07057 382 PVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDH 425 (591)
T ss_pred eeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 369999999953 22 35788999999999988754
No 366
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=21.31 E-value=77 Score=30.30 Aligned_cols=74 Identities=18% Similarity=0.295 Sum_probs=40.1
Q ss_pred CCCCceeeeccchhhH-HH-HHHHHHhcc----ceeeCceeeeEEEcCC--Cc-EEEEEECCCCeEEEecCEEEEcCCch
Q 021616 43 KPKGQTVGSFRKGLTM-LP-EAISKRLGS----KVKLSWKLSGVKKLDS--GE-YSLTYETPEGLVSLRSRSVVMTVPSY 113 (310)
Q Consensus 43 ~~~~~~~~~~~gG~~~-L~-~~L~~~l~~----~i~~~~~V~~I~~~~~--~~-~~v~~~~~~g~~~~~ad~VI~a~p~~ 113 (310)
..+|+.+|.++--+.. +- +.|.+.+.. .|+- ..|..|...++ |. +...+...+| ..+.|+-||+||--.
T Consensus 108 rs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire-~~V~dliv~~~~~~~~~~~gV~l~dg-t~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 108 RSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIRE-GAVADLIVEDPDDGHCVVSGVVLVDG-TVVYAESVILTTGTF 185 (679)
T ss_pred ccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhh-hhhhheeeccCCCCceEEEEEEEecC-cEeccceEEEeeccc
Confidence 4566778877765544 22 344444432 2333 34555544332 11 1111223578 479999999998776
Q ss_pred HHHhc
Q 021616 114 VASSL 118 (310)
Q Consensus 114 ~~~~l 118 (310)
.-+.+
T Consensus 186 L~~~I 190 (679)
T KOG2311|consen 186 LRGQI 190 (679)
T ss_pred eeeEE
Confidence 55544
No 367
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=21.13 E-value=3e+02 Score=25.88 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=28.5
Q ss_pred ccceeeCceeeeEEEcCCCcE-EEEEE-------CCCC----------eEEEecCEEEEcCCc
Q 021616 68 GSKVKLSWKLSGVKKLDSGEY-SLTYE-------TPEG----------LVSLRSRSVVMTVPS 112 (310)
Q Consensus 68 ~~~i~~~~~V~~I~~~~~~~~-~v~~~-------~~~g----------~~~~~ad~VI~a~p~ 112 (310)
+.++++++.+.+|..+++|.+ .|.+. +++| +.++.+|.||+++-.
T Consensus 323 GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 323 GVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred CCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 457899999999976544323 23331 1122 236899999998765
No 368
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=20.89 E-value=2.5e+02 Score=21.06 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=18.3
Q ss_pred ceeeeEEEcCCCcEEEEEECCCCe
Q 021616 75 WKLSGVKKLDSGEYSLTYETPEGL 98 (310)
Q Consensus 75 ~~V~~I~~~~~~~~~v~~~~~~g~ 98 (310)
-.|++|...++|.+.|++.+++|+
T Consensus 11 G~I~~I~~~ekgg~~vtI~~~dG~ 34 (118)
T PF01333_consen 11 GTITKITRKEKGGYEVTIETSDGE 34 (118)
T ss_dssp EEEEEEEEETTSEEEEEEETTTSE
T ss_pred eEEEEEEEcCCCCEEEEEECCCCC
Confidence 367888888766688888778883
No 369
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=20.88 E-value=1.3e+02 Score=29.55 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=26.8
Q ss_pred CCCCeEEeeccc----CC------CchhHHHHHHHHHHHHHHHHh
Q 021616 270 GYQGLFLGGNYV----AG------VALGRCVESAYEVASEVSNFL 304 (310)
Q Consensus 270 ~~~~l~~aG~~~----~g------~gv~~ai~sG~~aA~~i~~~l 304 (310)
..+|||-||+.. +| .++.+|+..|+.|++.+....
T Consensus 369 ~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~ 413 (580)
T TIGR01176 369 RIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERA 413 (580)
T ss_pred ccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhh
Confidence 479999999852 22 357789999999999887543
No 370
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=20.74 E-value=1.5e+02 Score=27.31 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=26.2
Q ss_pred CCCeEEeecccC------CCchhHHHHHHHHHHHHHHH
Q 021616 271 YQGLFLGGNYVA------GVALGRCVESAYEVASEVSN 302 (310)
Q Consensus 271 ~~~l~~aG~~~~------g~gv~~ai~sG~~aA~~i~~ 302 (310)
.+++.++||..| |-|++.|+..+...|+.|..
T Consensus 278 ~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~ 315 (390)
T TIGR02360 278 YGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLE 315 (390)
T ss_pred cCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHH
Confidence 378999999743 56789999999999988764
No 371
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=20.39 E-value=1.5e+02 Score=24.80 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=28.3
Q ss_pred CCCCCChHHHHHHHHHHhhhcCCCCeEEeecccCCCchhHHHHHH
Q 021616 249 PQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESA 293 (310)
Q Consensus 249 p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~~ai~sG 293 (310)
|+-.|-+....+-.+.+++..+...||++|..+...++++.+++=
T Consensus 205 ~~v~PV~eKMAeIv~~hie~~~i~dl~lvGGac~~~g~e~~Fe~~ 249 (277)
T COG4820 205 PVVKPVYEKMAEIVARHIEGQGITDLWLVGGACMQPGVEELFEKQ 249 (277)
T ss_pred cchhHHHHHHHHHHHHHhccCCCcceEEecccccCccHHHHHHHH
Confidence 344444544444445666654556799999888777777776653
No 372
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=20.35 E-value=1.3e+02 Score=28.35 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=26.9
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSNF 303 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~~ 303 (310)
..++||.+||...+.. ...|+..|+.+|+.|...
T Consensus 298 ~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (461)
T TIGR01350 298 NVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGK 332 (461)
T ss_pred CCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 3589999999865433 567899999999998753
No 373
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=20.25 E-value=1.3e+02 Score=28.31 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=26.7
Q ss_pred CCCCeEEeecccCCCc-hhHHHHHHHHHHHHHHH
Q 021616 270 GYQGLFLGGNYVAGVA-LGRCVESAYEVASEVSN 302 (310)
Q Consensus 270 ~~~~l~~aG~~~~g~g-v~~ai~sG~~aA~~i~~ 302 (310)
..++||.+||-..+.. ...|+..|+.||..|..
T Consensus 297 s~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 297 SVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred CCCCEEEEEecCCCccchhHHHHHHHHHHHHhcC
Confidence 4689999999865432 47799999999999875
Done!