Query 021617
Match_columns 310
No_of_seqs 217 out of 372
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3088 Secretory carrier memb 100.0 2E-100 3E-105 708.2 29.4 279 1-308 1-291 (313)
2 PF04144 SCAMP: SCAMP family; 100.0 4.2E-60 9.2E-65 419.6 18.0 171 118-292 1-177 (177)
3 KOG3088 Secretory carrier memb 99.4 1.4E-11 3E-16 115.8 17.2 66 78-143 65-133 (313)
4 PF04144 SCAMP: SCAMP family; 94.6 0.48 1E-05 42.2 10.9 109 123-232 2-117 (177)
5 KOG2391 Vacuolar sorting prote 79.7 23 0.00049 35.1 10.8 10 87-96 235-244 (365)
6 PF05915 DUF872: Eukaryotic pr 78.4 13 0.00028 31.1 7.7 38 173-212 71-108 (115)
7 TIGR03319 YmdA_YtgF conserved 76.6 4 8.7E-05 42.3 5.1 10 94-103 104-113 (514)
8 KOG3966 p53-mediated apoptosis 73.3 8.8 0.00019 37.1 6.0 65 140-206 90-173 (360)
9 PRK10263 DNA translocase FtsK; 70.1 74 0.0016 36.9 13.1 10 240-249 142-151 (1355)
10 PF05884 ZYG-11_interact: Inte 66.6 1.1E+02 0.0023 29.9 11.8 19 182-201 140-158 (299)
11 KOG3312 Predicted membrane pro 65.2 46 0.001 29.5 8.3 96 80-211 41-143 (186)
12 PF14257 DUF4349: Domain of un 63.9 65 0.0014 30.0 9.8 11 143-153 217-227 (262)
13 PRK13741 conjugal transfer ent 63.1 62 0.0013 29.1 8.8 17 194-210 78-98 (171)
14 KOG3859 Septins (P-loop GTPase 60.8 15 0.00032 35.9 4.9 30 81-110 334-371 (406)
15 KOG2174 Leptin receptor gene-r 58.2 56 0.0012 28.0 7.3 93 156-258 15-108 (131)
16 COG0239 CrcB Integral membrane 57.7 93 0.002 26.4 8.7 43 240-282 71-122 (126)
17 PRK10245 adrA diguanylate cycl 56.5 2E+02 0.0044 28.1 13.0 73 119-199 13-85 (366)
18 KOG1150 Predicted molecular ch 55.5 13 0.00028 34.4 3.3 26 80-105 168-195 (250)
19 PF05297 Herpes_LMP1: Herpesvi 54.2 4.2 9.1E-05 39.5 0.0 49 177-226 103-152 (381)
20 PRK14231 camphor resistance pr 52.6 1.4E+02 0.0031 25.2 9.2 42 241-282 67-117 (129)
21 PF14265 DUF4355: Domain of un 52.1 28 0.0006 28.7 4.6 24 84-107 46-69 (125)
22 PF07787 DUF1625: Protein of u 51.7 42 0.00091 31.2 6.2 21 151-171 192-212 (248)
23 PHA03239 envelope glycoprotein 50.4 1.3E+02 0.0028 30.8 9.8 28 144-171 25-52 (429)
24 PRK12705 hypothetical protein; 48.8 28 0.0006 36.3 4.9 18 85-102 89-106 (508)
25 PF11712 Vma12: Endoplasmic re 48.3 1.7E+02 0.0037 24.8 12.2 12 157-168 79-90 (142)
26 PF12737 Mating_C: C-terminal 48.1 19 0.00042 36.5 3.6 25 79-103 394-418 (419)
27 TIGR00927 2A1904 K+-dependent 47.5 38 0.00082 38.1 5.9 22 255-276 1063-1084(1096)
28 COG3462 Predicted membrane pro 47.5 1.5E+02 0.0033 24.9 8.1 29 262-290 49-77 (117)
29 PRK11098 microcin B17 transpor 46.5 1.1E+02 0.0023 31.1 8.6 68 135-207 46-124 (409)
30 COG1422 Predicted membrane pro 44.9 1.6E+02 0.0035 27.2 8.6 26 194-219 157-183 (201)
31 KOG1996 mRNA splicing factor [ 44.6 37 0.00081 33.2 4.7 25 79-103 117-141 (378)
32 KOG1479 Nucleoside transporter 44.3 24 0.00051 35.8 3.5 56 240-295 156-219 (406)
33 PF14015 DUF4231: Protein of u 43.1 1.5E+02 0.0032 23.5 7.4 43 264-308 57-99 (112)
34 PF11471 Sugarporin_N: Maltopo 41.3 53 0.0011 24.4 4.1 22 87-108 32-53 (60)
35 KOG4721 Serine/threonine prote 40.4 22 0.00047 38.1 2.6 17 96-112 451-467 (904)
36 COG4818 Predicted membrane pro 40.0 77 0.0017 26.0 5.2 17 192-208 69-85 (105)
37 PF03219 TLC: TLC ATP/ADP tran 39.8 4.5E+02 0.0097 27.2 13.4 82 146-227 25-109 (491)
38 PF06011 TRP: Transient recept 39.5 3.8E+02 0.0083 26.8 11.4 49 152-203 299-349 (438)
39 PF11712 Vma12: Endoplasmic re 37.9 1.1E+02 0.0023 26.1 6.2 20 242-261 93-113 (142)
40 PF03154 Atrophin-1: Atrophin- 37.6 27 0.00058 38.9 2.9 9 81-89 715-723 (982)
41 PF13863 DUF4200: Domain of un 37.4 78 0.0017 25.8 5.1 23 82-104 16-38 (126)
42 COG1008 NuoM NADH:ubiquinone o 37.1 70 0.0015 33.3 5.6 52 226-286 377-432 (497)
43 PF03821 Mtp: Golgi 4-transmem 36.2 3E+02 0.0065 26.0 9.2 85 198-290 89-187 (233)
44 PF03154 Atrophin-1: Atrophin- 36.1 24 0.00053 39.2 2.3 15 82-96 580-597 (982)
45 PF00816 Histone_HNS: H-NS his 36.0 49 0.0011 26.0 3.5 37 80-116 1-39 (93)
46 PF04210 MtrG: Tetrahydrometha 35.9 2E+02 0.0044 22.1 8.7 58 79-166 11-68 (70)
47 PF10176 DUF2370: Protein of u 35.6 2.8E+02 0.006 26.2 8.9 16 274-289 202-217 (233)
48 PF10883 DUF2681: Protein of u 35.4 86 0.0019 25.1 4.7 26 265-290 6-31 (87)
49 PF10716 NdhL: NADH dehydrogen 34.6 85 0.0018 24.8 4.5 39 178-216 21-59 (81)
50 PF09036 Bcr-Abl_Oligo: Bcr-Ab 34.2 61 0.0013 25.3 3.6 23 82-104 28-50 (79)
51 PF01956 DUF106: Integral memb 34.0 72 0.0016 27.7 4.6 19 80-98 43-61 (168)
52 COG4652 Uncharacterized protei 33.6 4.8E+02 0.01 28.3 11.2 38 253-290 274-311 (657)
53 PF03904 DUF334: Domain of unk 33.5 2.3E+02 0.0051 26.6 8.0 82 198-290 143-230 (230)
54 TIGR02051 MerR Hg(II)-responsi 33.2 96 0.0021 25.6 5.0 25 81-105 80-104 (124)
55 KOG4721 Serine/threonine prote 33.1 43 0.00094 35.9 3.4 21 88-108 450-470 (904)
56 PRK14217 camphor resistance pr 33.0 3.1E+02 0.0067 23.4 9.9 41 241-281 73-122 (134)
57 PRK10780 periplasmic chaperone 32.7 1E+02 0.0023 26.7 5.4 14 83-96 86-99 (165)
58 PF06476 DUF1090: Protein of u 32.3 59 0.0013 27.1 3.6 21 84-104 67-87 (115)
59 PHA03237 envelope glycoprotein 32.2 3.5E+02 0.0076 27.7 9.6 27 145-171 18-44 (424)
60 cd07912 Tweety_N N-terminal do 32.0 3E+02 0.0064 28.1 9.1 30 142-171 199-228 (418)
61 PF14851 FAM176: FAM176 family 31.4 46 0.001 29.3 2.9 16 88-104 118-133 (153)
62 PF06305 DUF1049: Protein of u 31.1 63 0.0014 23.5 3.2 22 83-104 44-65 (68)
63 KOG3866 DNA-binding protein of 30.7 59 0.0013 32.2 3.7 32 74-105 340-371 (442)
64 PF06673 L_lactis_ph-MCP: Lact 29.9 58 0.0013 30.4 3.4 20 85-104 19-38 (347)
65 PF12737 Mating_C: C-terminal 29.7 51 0.0011 33.5 3.3 26 85-110 393-418 (419)
66 PF05529 Bap31: B-cell recepto 29.3 91 0.002 27.6 4.5 24 82-105 156-179 (192)
67 PRK10929 putative mechanosensi 29.3 9.4E+02 0.02 27.8 15.8 13 136-148 775-787 (1109)
68 PRK14210 camphor resistance pr 29.2 3.4E+02 0.0075 22.7 8.9 41 241-281 73-122 (127)
69 PF05178 Kri1: KRI1-like famil 29.0 69 0.0015 26.2 3.3 15 84-98 3-17 (101)
70 PHA02148 hypothetical protein 28.8 1.6E+02 0.0034 24.0 5.3 15 97-111 58-72 (110)
71 PF12263 DUF3611: Protein of u 28.7 4.4E+02 0.0095 23.8 14.0 34 137-170 3-37 (183)
72 KOG2881 Predicted membrane pro 28.5 39 0.00084 32.6 2.0 21 86-106 160-180 (294)
73 KOG4279 Serine/threonine prote 28.3 1.5E+02 0.0033 32.9 6.5 18 81-98 1106-1123(1226)
74 KOG0065 Pleiotropic drug resis 28.2 1.6E+02 0.0036 34.3 7.1 62 139-201 1147-1226(1391)
75 PF06476 DUF1090: Protein of u 27.9 1.2E+02 0.0025 25.4 4.6 22 77-98 67-88 (115)
76 PRK14215 camphor resistance pr 27.8 3.7E+02 0.0079 22.6 8.6 42 241-282 71-121 (126)
77 PF07795 DUF1635: Protein of u 27.7 98 0.0021 28.8 4.5 13 85-97 24-36 (214)
78 PHA03242 envelope glycoprotein 27.6 6.6E+02 0.014 25.8 10.7 28 144-171 18-45 (428)
79 PF06936 Selenoprotein_S: Sele 27.6 1.1E+02 0.0024 27.8 4.8 21 82-102 89-109 (190)
80 PF05600 DUF773: Protein of un 27.4 1.5E+02 0.0032 30.9 6.2 69 72-143 124-202 (507)
81 PF01891 CbiM: Cobalt uptake s 27.4 4.5E+02 0.0098 23.5 12.4 126 143-287 71-201 (205)
82 PF13346 ABC2_membrane_5: ABC- 27.2 3.9E+02 0.0085 22.7 13.7 19 193-211 129-147 (206)
83 PF11853 DUF3373: Protein of u 27.2 56 0.0012 33.9 3.1 26 81-106 28-53 (489)
84 PF15390 DUF4613: Domain of un 26.8 1.3E+02 0.0028 32.3 5.6 25 81-105 545-569 (671)
85 PF07856 Orai-1: Mediator of C 26.7 4.6E+02 0.01 23.4 11.2 22 85-108 4-25 (175)
86 PF10205 KLRAQ: Predicted coil 26.7 1.1E+02 0.0024 25.2 4.2 19 80-98 33-51 (102)
87 PF06716 DUF1201: Protein of u 26.4 1.9E+02 0.004 20.8 4.6 37 260-299 12-48 (54)
88 PRK01026 tetrahydromethanopter 26.2 3.2E+02 0.007 21.4 9.9 60 79-168 14-73 (77)
89 cd08760 Cyt_b561_FRRS1_like Eu 26.0 2.4E+02 0.0053 24.7 6.7 57 214-279 67-125 (191)
90 TIGR02976 phageshock_pspB phag 26.0 1.4E+02 0.003 23.2 4.3 23 81-103 39-61 (75)
91 PRK14227 camphor resistance pr 25.9 3.9E+02 0.0085 22.3 8.9 41 241-281 71-120 (124)
92 PF06673 L_lactis_ph-MCP: Lact 25.8 56 0.0012 30.5 2.5 18 80-97 21-38 (347)
93 COG2991 Uncharacterized protei 25.3 65 0.0014 25.1 2.4 35 216-252 4-41 (77)
94 PF03938 OmpH: Outer membrane 25.2 1.7E+02 0.0036 24.7 5.3 13 128-140 140-152 (158)
95 PRK14198 camphor resistance pr 25.2 4.1E+02 0.0088 22.2 8.7 41 241-281 70-119 (124)
96 PF05988 DUF899: Bacterial pro 25.1 71 0.0015 29.6 3.0 26 78-103 8-33 (211)
97 PF09278 MerR-DNA-bind: MerR, 25.1 1.2E+02 0.0026 21.6 3.8 23 82-104 41-63 (65)
98 PF10810 DUF2545: Protein of u 25.0 1.7E+02 0.0036 22.8 4.5 10 149-158 2-11 (80)
99 PF10268 Tmemb_161AB: Predicte 24.8 8.1E+02 0.018 25.5 13.1 32 178-209 132-163 (486)
100 KOG3231 Predicted assembly/vac 24.0 1.5E+02 0.0033 26.7 4.8 25 80-104 18-42 (208)
101 PHA01750 hypothetical protein 24.0 94 0.002 23.8 3.0 18 87-104 52-69 (75)
102 PRK07331 cobalt transport prot 23.9 6.9E+02 0.015 24.4 13.8 57 144-206 73-129 (322)
103 PF13863 DUF4200: Domain of un 23.9 1.3E+02 0.0027 24.5 4.1 24 81-104 22-45 (126)
104 PRK10452 multidrug efflux syst 23.8 1.7E+02 0.0037 24.5 4.9 49 151-206 3-52 (120)
105 COG1422 Predicted membrane pro 23.7 4.4E+02 0.0096 24.3 7.9 17 80-96 75-91 (201)
106 PF05082 Rop-like: Rop-like; 23.6 1.2E+02 0.0026 23.1 3.6 15 131-145 26-40 (66)
107 PLN02189 cellulose synthase 23.5 1.2E+03 0.025 26.9 13.8 33 141-173 809-841 (1040)
108 PRK14208 camphor resistance pr 23.5 4.4E+02 0.0096 22.1 8.6 42 241-282 71-121 (126)
109 PF07047 OPA3: Optic atrophy 3 23.1 1.4E+02 0.003 25.3 4.3 23 83-105 104-126 (134)
110 PRK14218 camphor resistance pr 22.7 4.8E+02 0.01 22.2 9.2 41 241-281 77-126 (133)
111 PF11214 Med2: Mediator comple 22.4 92 0.002 25.8 2.9 12 79-90 78-89 (105)
112 KOG1691 emp24/gp25L/p24 family 22.0 2E+02 0.0042 26.8 5.3 19 146-164 177-195 (210)
113 PF11368 DUF3169: Protein of u 21.9 2E+02 0.0043 26.6 5.5 32 259-290 47-78 (248)
114 PF01277 Oleosin: Oleosin; In 21.9 2.1E+02 0.0046 24.2 5.1 15 278-292 72-86 (118)
115 KOG2881 Predicted membrane pro 21.9 53 0.0012 31.6 1.6 27 78-104 159-185 (294)
116 PRK00888 ftsB cell division pr 21.7 2E+02 0.0044 23.4 4.8 10 88-97 45-54 (105)
117 PF04133 Vps55: Vacuolar prote 21.7 3.1E+02 0.0068 23.0 6.1 75 154-241 7-85 (120)
118 COG3671 Predicted membrane pro 21.6 3.1E+02 0.0067 23.4 5.9 33 140-172 19-51 (125)
119 PF04521 Viral_P18: ssRNA posi 21.6 1.3E+02 0.0028 25.6 3.7 22 81-102 76-97 (120)
120 PF05988 DUF899: Bacterial pro 21.5 1.6E+02 0.0035 27.3 4.6 28 77-104 14-41 (211)
121 COG4372 Uncharacterized protei 21.4 1.6E+02 0.0034 30.1 4.8 9 99-107 215-223 (499)
122 PF14851 FAM176: FAM176 family 21.3 1.4E+02 0.0031 26.3 4.1 42 244-285 6-47 (153)
123 PF05278 PEARLI-4: Arabidopsis 21.3 1.8E+02 0.0039 28.0 5.1 21 84-104 204-224 (269)
124 PF10337 DUF2422: Protein of u 21.1 8.6E+02 0.019 24.5 12.1 29 143-171 14-42 (459)
125 PRK02898 cobalt transport prot 21.1 38 0.00082 27.8 0.4 31 264-294 65-95 (100)
126 PF00558 Vpu: Vpu protein; In 21.0 1.2E+02 0.0027 23.9 3.3 25 268-292 10-34 (81)
127 PRK04125 murein hydrolase regu 21.0 5.5E+02 0.012 22.2 10.5 15 244-258 78-92 (141)
128 COG2211 MelB Na+/melibiose sym 20.9 9.4E+02 0.02 24.9 13.3 19 287-305 435-454 (467)
129 PF08182 Pedibin: Pedibin/Hym- 20.9 94 0.002 20.7 2.2 13 85-97 19-31 (35)
130 COG4372 Uncharacterized protei 20.8 1.7E+02 0.0037 29.8 4.9 15 89-103 212-226 (499)
131 PF03381 CDC50: LEM3 (ligand-e 20.8 88 0.0019 29.8 2.9 33 246-278 231-264 (278)
132 TIGR00540 hemY_coli hemY prote 20.6 2.5E+02 0.0054 27.6 6.2 9 278-286 59-67 (409)
133 KOG3866 DNA-binding protein of 20.6 1.1E+02 0.0023 30.4 3.4 24 86-109 345-368 (442)
134 PF04281 Tom22: Mitochondrial 20.5 2.9E+02 0.0063 23.9 5.8 20 177-196 93-112 (137)
135 COG5523 Predicted integral mem 20.4 7.8E+02 0.017 23.7 9.9 74 213-288 91-167 (271)
136 PRK14212 camphor resistance pr 20.3 5.2E+02 0.011 21.7 8.8 42 241-282 71-121 (128)
137 KOG0054 Multidrug resistance-a 20.2 1.2E+03 0.026 27.7 12.0 19 177-195 891-909 (1381)
138 KOG0933 Structural maintenance 20.2 2.2E+02 0.0047 32.4 6.0 32 76-107 673-704 (1174)
No 1
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-100 Score=708.22 Aligned_cols=279 Identities=52% Similarity=0.938 Sum_probs=255.3
Q ss_pred CCCCCCCCCCCC-cCCCCCCCccccccCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccc-
Q 021617 1 MAGRYDSNPFDE-EEVNPFSDPAVRGKSSGQSRFGGGGFFTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPLDT- 78 (310)
Q Consensus 1 m~~~~d~npf~~-~~~nPF~dp~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~- 78 (310)
|+ +||+|||+| +++|||+||+|+|+.++ ++++|.+++|+++ +.++|+++|.+.
T Consensus 1 ~s-~~d~NPFadp~~~NPF~dp~~~q~~~~----------------------~~~~p~~~~~~~~--~~~~tv~~P~~~~ 55 (313)
T KOG3088|consen 1 MS-RYDPNPFAEPELVNPFADPAVVQPAST----------------------PPLSPLPPEPAPS--DQGPTVDIPLDSP 55 (313)
T ss_pred CC-CCCCCCCCCcccCCCCCCccccCCccC----------------------CCCCCCCCCCCCC--CCCCccccCCCCC
Confidence 67 999999999 88999999999876221 3344555455422 346788888877
Q ss_pred ---hHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCccCCCC------CCcccccccccccchHHHHHHHHHHH
Q 021617 79 ---AADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWP------PFFPIIHHDIANEIPIHLQRLQYVAF 149 (310)
Q Consensus 79 ---~~~l~~k~~EL~~kE~EL~rRE~eL~~re~~~~~~g~~~~~~NwP------pf~P~~yhDI~~EIP~~~q~~v~~~y 149 (310)
.+|+.+||+||.|||+||+|||+||+|||++++++|..+++|||| |++|||||||++|||+|+||+||++|
T Consensus 56 ~~~a~~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~y 135 (313)
T KOG3088|consen 56 STQAKDLAKKQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAY 135 (313)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999 56899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcCcchhHHHHHHHHHHHHHHHhh
Q 021617 150 ATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIF 229 (310)
Q Consensus 150 ~~wl~~~~~L~~N~i~~l~~~i~g~~~~~f~Laily~ilg~P~sf~~WYrplY~A~r~dss~~f~~fF~~~~~~i~f~v~ 229 (310)
|+||++++||+||+++|+++||+|+++.+|+|||||+++|+||||+|||||||||||+||||+|+||||+|++|++|||+
T Consensus 136 ylwm~~~~tL~~Niia~la~~i~g~~~~~f~Laii~fllftPcsyVcWyRPlYkAFRsDSSf~F~~FFF~y~~q~~~~v~ 215 (313)
T KOG3088|consen 136 YLWMGLVLTLLWNIIACLAWWIKGGGGTIFGLAIIWFLLFTPCSYVCWYRPLYKAFRTDSSFNFGAFFFTYFFQIVFCVF 215 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhCCceeeEeehHHHHHhccccchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcccccCccccchhhHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH-HHHHHHhhHHhh
Q 021617 230 ASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAE-MKREAARGAMRA 308 (310)
Q Consensus 230 ~aIG~P~~f~g~g~~G~i~ai~~~~~~~~vgi~~~I~a~lf~~~~~~~~~~l~~V~~~yR~~G~s~~-a~~e~a~~~~~~ 308 (310)
++||++ |||.||||.||+.++.+.+|||+|+|++++||+++++++|+++|||+|||++|+|.+ +|+|+++|+|++
T Consensus 216 qAvgf~----g~~~~G~i~ai~~~~~~i~v~i~m~i~a~~Ft~~av~~i~~i~kVh~~yRgsG~sf~kaq~e~~~g~~~~ 291 (313)
T KOG3088|consen 216 QAVGFP----GWGLCGWIPAIDVLSGNIAVGILMLIGAGLFTLEAVLSIWVLQKVHSYYRGSGASFQKAQEEFTTGVMSN 291 (313)
T ss_pred HHHccC----CcchhhhhhHhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHhhC
Confidence 999955 999999999999999999999999999999999999999999999999999999976 555666666654
No 2
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=100.00 E-value=4.2e-60 Score=419.55 Aligned_cols=171 Identities=42% Similarity=0.866 Sum_probs=167.2
Q ss_pred ccCCCCCCc------ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhhh
Q 021617 118 EEKNWPPFF------PIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVP 191 (310)
Q Consensus 118 ~~~NwPpf~------P~~yhDI~~EIP~~~q~~v~~~y~~wl~~~~~L~~N~i~~l~~~i~g~~~~~f~Laily~ilg~P 191 (310)
|+|||||++ ||+||||++|||+++||+||++|++||++++||++|+++|++.++.|+++++|+||++|+++|+|
T Consensus 1 ~~~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~~~~~~~~lai~y~~~~~P 80 (177)
T PF04144_consen 1 RENNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAGGSGSDFGLAILYLLLGTP 80 (177)
T ss_pred CCCCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHhH
Confidence 589999999 99999999999999999999999999999999999999999999977778999999999999999
Q ss_pred hhhhhhhhhhhhhhhcCcchhHHHHHHHHHHHHHHHhhhhccCcccccCccccchhhHHHhhcCCchhhHHHHHHHHHHH
Q 021617 192 GAYVLWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMGDHALVGIFYFIGFGLFC 271 (310)
Q Consensus 192 ~sf~~WYrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~aIG~P~~f~g~g~~G~i~ai~~~~~~~~vgi~~~I~a~lf~ 271 (310)
+||+|||||+|||+|+|||++|++||+++++|++||++++||+| ++|+||||+||+++++|+.+||+++|++++|+
T Consensus 81 ~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~i~~aIG~p----~~G~~G~i~ai~~~~~~~~vgi~~~I~a~~w~ 156 (177)
T PF04144_consen 81 ASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFCIIMAIGIP----GWGSCGWITAIDVFSNNKAVGILMLIVAILWT 156 (177)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccc----cccHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 78999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCC
Q 021617 272 LESLVSIWVIQQVYMYFRGSG 292 (310)
Q Consensus 272 ~~~~~~~~~l~~V~~~yR~~G 292 (310)
+++++++|+++|||++||++|
T Consensus 157 ~~~~~~~~~l~kv~~~yR~~G 177 (177)
T PF04144_consen 157 LEAVLSFWLLKKVHRYYRGTG 177 (177)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999997
No 3
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.4e-11 Score=115.77 Aligned_cols=66 Identities=30% Similarity=0.391 Sum_probs=37.8
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCccC---CCCCCcccccccccccchHHHHH
Q 021617 78 TAADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEK---NWPPFFPIIHHDIANEIPIHLQR 143 (310)
Q Consensus 78 ~~~~l~~k~~EL~~kE~EL~rRE~eL~~re~~~~~~g~~~~~~---NwPpf~P~~yhDI~~EIP~~~q~ 143 (310)
+++||+||||||+|||+||||||+++++-..+.+..||+|.+. =.|=||..|--||.+|..+-..+
T Consensus 65 kq~eL~~rqeEL~Rke~ELdRREr~~a~~g~~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~ 133 (313)
T KOG3088|consen 65 KQAELLKKQEELRRKEQELDRRERALARAGIVIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKR 133 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhccCcccccCCCCCCCCCCcccccccccccccCHHHHHHHHH
Confidence 4566666666666666666666666665333444456665542 33445566666666666554443
No 4
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=94.58 E-value=0.48 Score=42.21 Aligned_cols=109 Identities=8% Similarity=-0.019 Sum_probs=70.5
Q ss_pred CCCccccc------ccccccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhhhhhhh
Q 021617 123 PPFFPIIH------HDIANEIPIHLQR-LQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYV 195 (310)
Q Consensus 123 Ppf~P~~y------hDI~~EIP~~~q~-~v~~~y~~wl~~~~~L~~N~i~~l~~~i~g~~~~~f~Laily~ilg~P~sf~ 195 (310)
.|+||-++ .=+.+||.+|.+. .+++.+..+....+..+.=++..+++++.--...+ +-.+...++...+...
T Consensus 2 ~~NwPp~~~~~~~~P~~y~di~~eIP~~~q~~v~~~y~~w~~~~~~l~~N~i~~~~~~~~~~~-~~~~~lai~y~~~~~P 80 (177)
T PF04144_consen 2 ENNWPPFPKFCCIKPCFYHDISEEIPEEFQRLVKRAYYLWLFLAITLFWNFIACLALLIAGGS-GSDFGLAILYLLLGTP 80 (177)
T ss_pred CCCCCCCccccCCCCeEEeCHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cceehHHHHHHHHHhH
Confidence 47899999 9999999999975 88888888885544322222222221111122333 4445666666677777
Q ss_pred hhhhhhhhhhhcCcchhHHHHHHHHHHHHHHHhhhhc
Q 021617 196 LWYRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASV 232 (310)
Q Consensus 196 ~WYrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~aI 232 (310)
+-|.-+|+...+--...-...|..|++...+.+...|
T Consensus 81 ~sf~~wyrplY~A~r~dss~~f~~ff~~~~~~i~f~i 117 (177)
T PF04144_consen 81 ASFFCWYRPLYKAFRTDSSFRFMWFFFFFFVHIIFCI 117 (177)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 8899999988877665555666666666666665553
No 5
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.68 E-value=23 Score=35.13 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 021617 87 KELQAKEAEL 96 (310)
Q Consensus 87 ~EL~~kE~EL 96 (310)
++|+|+|+||
T Consensus 235 ~slkRt~EeL 244 (365)
T KOG2391|consen 235 ESLKRTEEEL 244 (365)
T ss_pred HHHHhhHHHH
Confidence 3344444444
No 6
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=78.40 E-value=13 Score=31.14 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=27.3
Q ss_pred CCChhHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcCcchh
Q 021617 173 GEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMK 212 (310)
Q Consensus 173 g~~~~~f~Laily~ilg~P~sf~~WYrplY~A~r~dss~~ 212 (310)
+.....+.+-++=+|+++|+.|.+ |-+|.|.|--..+.
T Consensus 71 ~~~~~~~~llilG~L~fIPG~Y~~--~i~y~a~rg~~Gys 108 (115)
T PF05915_consen 71 GDRDRGWALLILGILCFIPGFYHT--RIAYYAWRGYKGYS 108 (115)
T ss_pred CCCcccchHHHHHHHHHhccHHHH--HHHHHHHcCCCCCC
Confidence 444556777777788999999987 56777877555443
No 7
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=76.64 E-value=4 Score=42.31 Aligned_cols=10 Identities=20% Similarity=0.677 Sum_probs=3.6
Q ss_pred HHHHHHHHhh
Q 021617 94 AELRRREQDV 103 (310)
Q Consensus 94 ~EL~rRE~eL 103 (310)
++|+++|++|
T Consensus 104 ~~Le~ke~~L 113 (514)
T TIGR03319 104 ENLEKKEKEL 113 (514)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 8
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=73.26 E-value=8.8 Score=37.07 Aligned_cols=65 Identities=17% Similarity=0.365 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC----C-hh---HHHHHHHH-HHhhhhhhhh------hhhhh
Q 021617 140 HLQRLQYVAFATYLGLFLCLLWNIVAVTTAW----IKGE----G-VK---IWFLAIIY-FIAGVPGAYV------LWYRP 200 (310)
Q Consensus 140 ~~q~~v~~~y~~wl~~~~~L~~N~i~~l~~~----i~g~----~-~~---~f~Laily-~ilg~P~sf~------~WYrp 200 (310)
.++.+.+-.+..|+. +.|+||.+.-++-+ +.|. + +- .++|+.++ ++...|+-+. +||--
T Consensus 90 ~F~cc~wngg~~w~s--~llf~~v~ipiL~~~~s~f~g~~s~h~~vw~wl~~~ls~lfg~iwVlPiF~lSkiV~alWF~D 167 (360)
T KOG3966|consen 90 SFLCCLWNGGAMWIS--FLLFWQVCIPILGLFFSFFDGTDSGHNVVWGWLHPILSLLFGYIWVLPIFFLSKIVQALWFSD 167 (360)
T ss_pred HHHHHHHhcchHHHH--HHHHHHHHHHHHHHHHheeccCCccccchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888884 46788877543222 3331 1 11 23444433 3444555544 78887
Q ss_pred hhhhhh
Q 021617 201 LYRAFR 206 (310)
Q Consensus 201 lY~A~r 206 (310)
+=+|+.
T Consensus 168 Ia~aa~ 173 (360)
T KOG3966|consen 168 IAGAAM 173 (360)
T ss_pred HHHHHH
Confidence 766654
No 9
>PRK10263 DNA translocase FtsK; Provisional
Probab=70.14 E-value=74 Score=36.95 Aligned_cols=10 Identities=20% Similarity=0.312 Sum_probs=6.0
Q ss_pred CccccchhhH
Q 021617 240 GKSLTGVLPA 249 (310)
Q Consensus 240 g~g~~G~i~a 249 (310)
+.|..|.+.+
T Consensus 142 gGGIIG~lLs 151 (1355)
T PRK10263 142 SGGVIGSLLS 151 (1355)
T ss_pred ccchHHHHHH
Confidence 5566666654
No 10
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=66.58 E-value=1.1e+02 Score=29.94 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=10.3
Q ss_pred HHHHHHhhhhhhhhhhhhhh
Q 021617 182 AIIYFIAGVPGAYVLWYRPL 201 (310)
Q Consensus 182 aily~ilg~P~sf~~WYrpl 201 (310)
|++...+.+|+...- |.+.
T Consensus 140 Aaila~iviP~~~~y-~ln~ 158 (299)
T PF05884_consen 140 AAILAYIVIPLIAYY-YLNK 158 (299)
T ss_pred HHHHHHHHHHHHHHh-hccc
Confidence 444455666765544 5544
No 11
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=65.17 E-value=46 Score=29.47 Aligned_cols=96 Identities=22% Similarity=0.259 Sum_probs=48.6
Q ss_pred HHHHHhHHHHHHHHHHHH-----HHHHhhHHHHHHHHhcCCCCccCCCCCCcccccccccccchHHHHHHHHHHHHHHHH
Q 021617 80 ADLKKKEKELQAKEAELR-----RREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLG 154 (310)
Q Consensus 80 ~~l~~k~~EL~~kE~EL~-----rRE~eL~~re~~~~~~g~~~~~~NwPpf~P~~yhDI~~EIP~~~q~~v~~~y~~wl~ 154 (310)
+|..++.+.||+|.+|.- ...+.+.|.|+.+.+.| -|.+ ++++--..-++
T Consensus 41 a~vdK~sKKLE~~K~~~~~s~~k~~kkKieR~Ee~LK~~n----------------RDlS---------l~kmKsmfaig 95 (186)
T KOG3312|consen 41 AEVDKQSKKLEKKKEENGDSNDKSKKKKIERVEEKLKNNN----------------RDLS---------LFKMKSMFAIG 95 (186)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhccc----------------cchH---------HHHHHHHHHHH
Confidence 467777788887777651 23334445554444332 1221 33333333344
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhhhhhhh--hhhhhhhhhhhcCcch
Q 021617 155 LFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYV--LWYRPLYRAFRTESAM 211 (310)
Q Consensus 155 ~~~~L~~N~i~~l~~~i~g~~~~~f~Laily~ilg~P~sf~--~WYrplY~A~r~dss~ 211 (310)
++++.++.++.+++ .|.-+.. +=|.|++++ +.+|.|-.-=.+|-|+
T Consensus 96 l~ftal~~~fNSiF---eGrVVAk--------LPF~Pis~iqglSHRnL~GdD~TDCSf 143 (186)
T KOG3312|consen 96 LAFTALLGMFNSIF---EGRVVAK--------LPFTPISIIQGLSHRNLKGDDMTDCSF 143 (186)
T ss_pred HHHHHHHHHHHhhh---cceeEEe--------cCCcchHHHhcccccCCCCCCccchHH
Confidence 44454555444432 3322222 456788877 6677765554555554
No 12
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=63.95 E-value=65 Score=29.96 Aligned_cols=11 Identities=9% Similarity=0.024 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 021617 143 RLQYVAFATYL 153 (310)
Q Consensus 143 ~~v~~~y~~wl 153 (310)
++..-....|-
T Consensus 217 ~~~~al~~~~~ 227 (262)
T PF14257_consen 217 RFRDALKNGWN 227 (262)
T ss_pred HHHHHHHHHHH
Confidence 44334444443
No 13
>PRK13741 conjugal transfer entry exclusion protein TraS; Provisional
Probab=63.11 E-value=62 Score=29.05 Aligned_cols=17 Identities=41% Similarity=0.436 Sum_probs=10.9
Q ss_pred hhhhhhhhhhh----hhcCcc
Q 021617 194 YVLWYRPLYRA----FRTESA 210 (310)
Q Consensus 194 f~~WYrplY~A----~r~dss 210 (310)
.+.-.|-+|-+ +|++|.
T Consensus 78 ~i~n~R~lYLSiP~~fRk~S~ 98 (171)
T PRK13741 78 AITNGRMLYLSIPDEFRKESK 98 (171)
T ss_pred HHHHHHHHHhcCcHHHHhhhH
Confidence 34456777765 677776
No 14
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.77 E-value=15 Score=35.95 Aligned_cols=30 Identities=37% Similarity=0.633 Sum_probs=16.3
Q ss_pred HHHHhHHHHH--------HHHHHHHHHHHhhHHHHHHH
Q 021617 81 DLKKKEKELQ--------AKEAELRRREQDVRRKEEAA 110 (310)
Q Consensus 81 ~l~~k~~EL~--------~kE~EL~rRE~eL~~re~~~ 110 (310)
++++|++|+. .||+||++.|+||..+.+.+
T Consensus 334 e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~l 371 (406)
T KOG3859|consen 334 ELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRL 371 (406)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665543 35566666666665544433
No 15
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=58.21 E-value=56 Score=28.02 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcCcch-hHHHHHHHHHHHHHHHhhhhccC
Q 021617 156 FLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAM-KFGWFFLFYLLHIGFCIFASVAP 234 (310)
Q Consensus 156 ~~~L~~N~i~~l~~~i~g~~~~~f~Laily~ilg~P~sf~~WYrplY~A~r~dss~-~f~~fF~~~~~~i~f~v~~aIG~ 234 (310)
++.+.+-+++|- +.+ .---.+..+.|.+.=+|+-++.=+|--+.--+++++. ..-.|+. .-.+..++++
T Consensus 15 a~G~~l~iL~CA--L~~--nwwPlf~~~~yvl~PiP~l~f~a~~~~~d~~~~~~~~idlA~FlT------g~~vvs~fal 84 (131)
T KOG2174|consen 15 AVGLLLLILGCA--LFR--NWWPLFVILFYVLSPIPNLLFIAGRTQHDFDATSDACIDLAKFLT------GAIVVSAFAL 84 (131)
T ss_pred HHHHHHHHHHhh--hcc--chHHHHHHHHHHhcCCchHHhccccceecccccccHHHHHHHHHh------cchhhhhhhh
Confidence 445667777772 221 1122466788888888888887666655555544432 3333322 3456678899
Q ss_pred cccccCccccchhhHHHhhcCCch
Q 021617 235 PIIFKGKSLTGVLPAVDVMGDHAL 258 (310)
Q Consensus 235 P~~f~g~g~~G~i~ai~~~~~~~~ 258 (310)
|+++..-|..||-...-.+..|.+
T Consensus 85 PiVl~ha~lI~~gAc~l~~tg~~i 108 (131)
T KOG2174|consen 85 PIVLAHAGLIGWGACALVLTGNSI 108 (131)
T ss_pred HHHHHHhhHhhhhhhhhhhcCCch
Confidence 999887777777766655555544
No 16
>COG0239 CrcB Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]
Probab=57.67 E-value=93 Score=26.38 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=32.3
Q ss_pred CccccchhhHHHhhcC---------CchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021617 240 GKSLTGVLPAVDVMGD---------HALVGIFYFIGFGLFCLESLVSIWVIQ 282 (310)
Q Consensus 240 g~g~~G~i~ai~~~~~---------~~~vgi~~~I~a~lf~~~~~~~~~~l~ 282 (310)
+.|+||=.++.+.|+. +...++.++...++.++.++...+.+.
T Consensus 71 ~tGflGglTTFSTfs~E~~~L~~~~~~~~a~~yi~~sv~~gl~a~~lG~~l~ 122 (126)
T COG0239 71 GTGFLGGLTTFSTFSLETVSLLQEGQYLLALAYILLSVLLGLLAVFLGLLLA 122 (126)
T ss_pred HHHHccchhhHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999998887642 345678899999999888877766554
No 17
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=56.49 E-value=2e+02 Score=28.08 Aligned_cols=73 Identities=15% Similarity=0.052 Sum_probs=46.9
Q ss_pred cCCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhhhhhhhhhh
Q 021617 119 EKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWY 198 (310)
Q Consensus 119 ~~NwPpf~P~~yhDI~~EIP~~~q~~v~~~y~~wl~~~~~L~~N~i~~l~~~i~g~~~~~f~Laily~ilg~P~sf~~WY 198 (310)
..-|||.++. +|-...--+++|++|..=..-....++++++++..+ +.....|++-+.+.++.+-++|.+--
T Consensus 13 ~~~~~~~~~~------~~~~~~~~~~~~r~~~~r~~g~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~p~~a~~~~~ 84 (366)
T PRK10245 13 HGEEPPLTPQ------NEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSH--PPPGWWWLLLVGWAFVWPHLAWQIAS 84 (366)
T ss_pred cccCCCCcch------hhhccccchhHHHHHHHHHHHHHHhHHHHHHHHHhc--ccchHHHHHHHHHHHHhHHHHHHHHH
Confidence 3458887653 122223345888988887655566677777664432 33345688888888888888887754
Q ss_pred h
Q 021617 199 R 199 (310)
Q Consensus 199 r 199 (310)
|
T Consensus 85 ~ 85 (366)
T PRK10245 85 R 85 (366)
T ss_pred h
Confidence 4
No 18
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=55.45 E-value=13 Score=34.45 Aligned_cols=26 Identities=42% Similarity=0.740 Sum_probs=16.9
Q ss_pred HHHHHhHHHHHHHHHHHHH--HHHhhHH
Q 021617 80 ADLKKKEKELQAKEAELRR--REQDVRR 105 (310)
Q Consensus 80 ~~l~~k~~EL~~kE~EL~r--RE~eL~~ 105 (310)
+|+++|.++|+.|+.|-++ ||.|+++
T Consensus 168 ae~erkRk~~e~r~~~eRkr~re~eIea 195 (250)
T KOG1150|consen 168 AELERKRKELEARANEERKRQREEEIEA 195 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5777777787777766544 4555543
No 19
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=54.25 E-value=4.2 Score=39.47 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcCcchhHHH-HHHHHHHHHHH
Q 021617 177 KIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGW-FFLFYLLHIGF 226 (310)
Q Consensus 177 ~~f~Laily~ilg~P~sf~~WYrplY~A~r~dss~~f~~-fF~~~~~~i~f 226 (310)
+..++.|+.+++++-++..+|++ +.---+-..|+.-.+ ||+.|+..|++
T Consensus 103 Q~LF~Gi~~l~l~~lLaL~vW~Y-m~lLr~~GAs~WtiLaFcLAF~Laivl 152 (381)
T PF05297_consen 103 QTLFVGIVILFLCCLLALGVWFY-MWLLRELGASFWTILAFCLAFLLAIVL 152 (381)
T ss_dssp ---------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45788888888888889889988 552223344542222 33444444433
No 20
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=52.56 E-value=1.4e+02 Score=25.18 Aligned_cols=42 Identities=10% Similarity=0.086 Sum_probs=26.7
Q ss_pred ccccchhhHHHhhc--------CC-chhhHHHHHHHHHHHHHHHHHHHHHH
Q 021617 241 KSLTGVLPAVDVMG--------DH-ALVGIFYFIGFGLFCLESLVSIWVIQ 282 (310)
Q Consensus 241 ~g~~G~i~ai~~~~--------~~-~~vgi~~~I~a~lf~~~~~~~~~~l~ 282 (310)
.|+||=.++.+.+. ++ ...++.+++..+.-++.++...+.+-
T Consensus 67 tGflGgfTTFSTf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l~ 117 (129)
T PRK14231 67 TGFIGAFTTFSAFSVDTIQLVQSGAWLLAVSYVLASFIGGLIMVKFGRMLS 117 (129)
T ss_pred hHHhcccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677666665543 23 34577888888887777766654444
No 21
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=52.12 E-value=28 Score=28.74 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=12.3
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHH
Q 021617 84 KKEKELQAKEAELRRREQDVRRKE 107 (310)
Q Consensus 84 ~k~~EL~~kE~EL~rRE~eL~~re 107 (310)
+.+.|++.++++|+.+++++.+++
T Consensus 46 k~~~e~~~~~~el~~~~~e~~~~e 69 (125)
T PF14265_consen 46 KAQEELEELEKELEELEAELARRE 69 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554433
No 22
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=51.75 E-value=42 Score=31.18 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 021617 151 TYLGLFLCLLWNIVAVTTAWI 171 (310)
Q Consensus 151 ~wl~~~~~L~~N~i~~l~~~i 171 (310)
+-|+.-+.+++..+..++.++
T Consensus 192 llmf~G~~~~~~~l~~l~~~~ 212 (248)
T PF07787_consen 192 LLMFIGFFLLFSPLYTLVDWI 212 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 334455556666666655554
No 23
>PHA03239 envelope glycoprotein M; Provisional
Probab=50.36 E-value=1.3e+02 Score=30.83 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021617 144 LQYVAFATYLGLFLCLLWNIVAVTTAWI 171 (310)
Q Consensus 144 ~v~~~y~~wl~~~~~L~~N~i~~l~~~i 171 (310)
.=++.+..|+..++|.++-++..++.+|
T Consensus 25 ~D~i~~r~W~~qv~~f~l~~l~~~v~lI 52 (429)
T PHA03239 25 LERISWRIWLTEAACFILGALLFLLAIF 52 (429)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888999888887777776654444
No 24
>PRK12705 hypothetical protein; Provisional
Probab=48.85 E-value=28 Score=36.27 Aligned_cols=18 Identities=33% Similarity=0.518 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 021617 85 KEKELQAKEAELRRREQD 102 (310)
Q Consensus 85 k~~EL~~kE~EL~rRE~e 102 (310)
|++.|++|.++|++||++
T Consensus 89 ~e~~l~~~~~~l~~~~~~ 106 (508)
T PRK12705 89 KEEQLDARAEKLDNLENQ 106 (508)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444333
No 25
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=48.31 E-value=1.7e+02 Score=24.82 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHH
Q 021617 157 LCLLWNIVAVTT 168 (310)
Q Consensus 157 ~~L~~N~i~~l~ 168 (310)
+++++|++.+++
T Consensus 79 ls~v~Nilvsv~ 90 (142)
T PF11712_consen 79 LSTVFNILVSVF 90 (142)
T ss_pred HHHHHHHHHHHH
Confidence 567888887744
No 26
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=48.13 E-value=19 Score=36.52 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=18.9
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhh
Q 021617 79 AADLKKKEKELQAKEAELRRREQDV 103 (310)
Q Consensus 79 ~~~l~~k~~EL~~kE~EL~rRE~eL 103 (310)
.++++.|++||+..|+++++.|+||
T Consensus 394 ~~~~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 394 EAEREAKRRELEELEAQARALRAEL 418 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677778888887777777777776
No 27
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=47.51 E-value=38 Score=38.05 Aligned_cols=22 Identities=18% Similarity=0.393 Sum_probs=16.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHH
Q 021617 255 DHALVGIFYFIGFGLFCLESLV 276 (310)
Q Consensus 255 ~~~~vgi~~~I~a~lf~~~~~~ 276 (310)
-+..+|+++++.-++|.+.+++
T Consensus 1063 L~R~lGivlLvlYvvFLV~aiL 1084 (1096)
T TIGR00927 1063 MNKILGFTMFLLYFVFLIISVM 1084 (1096)
T ss_pred EechHHHHHHHHHHHHHHHHHH
Confidence 3678889988888888665554
No 28
>COG3462 Predicted membrane protein [Function unknown]
Probab=47.46 E-value=1.5e+02 Score=24.87 Aligned_cols=29 Identities=7% Similarity=0.055 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021617 262 FYFIGFGLFCLESLVSIWVIQQVYMYFRG 290 (310)
Q Consensus 262 ~~~I~a~lf~~~~~~~~~~l~~V~~~yR~ 290 (310)
+++|.-++|.+..++.++++..++...|+
T Consensus 49 m~lImpI~~~vvli~lvvfm~~~~g~~r~ 77 (117)
T COG3462 49 MWLIMPIFWAVVLIFLVVFMFYILGAVRR 77 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56778888888888788777777777765
No 29
>PRK11098 microcin B17 transporter; Reviewed
Probab=46.53 E-value=1.1e+02 Score=31.14 Aligned_cols=68 Identities=24% Similarity=0.505 Sum_probs=37.5
Q ss_pred ccchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChhHH-------HHHHHHHHhhhhhhhhhhhhhhhh
Q 021617 135 NEIPIHLQRL---QYVAFATYLGLFLCLLWNIVAVTTAWIKG-EGVKIW-------FLAIIYFIAGVPGAYVLWYRPLYR 203 (310)
Q Consensus 135 ~EIP~~~q~~---v~~~y~~wl~~~~~L~~N~i~~l~~~i~g-~~~~~f-------~Laily~ilg~P~sf~~WYrplY~ 203 (310)
++.|...-+. -.+++|+|...|..++. .++...+ .+-+.+ .+.+.+...++-...--||++.|+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~w~~w~lLg~~~il~l~l~~v~l~V~~n~w~~~Fyd 120 (409)
T PRK11098 46 GQLPIGAARFWSPDFLWFYAYYLVCVGLFA-----GFWFIYSPHPWQRWSILGSALIIFVTWFLVQVSVAVNAWYAPFYD 120 (409)
T ss_pred cCCCcchhHhcCchHHHHHHHHHHHHHHHh-----hhhcccCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 3444444432 25678888765554332 1222222 222222 223344555666677789999999
Q ss_pred hhhc
Q 021617 204 AFRT 207 (310)
Q Consensus 204 A~r~ 207 (310)
|+.+
T Consensus 121 aLq~ 124 (409)
T PRK11098 121 LIQT 124 (409)
T ss_pred HHHH
Confidence 9986
No 30
>COG1422 Predicted membrane protein [Function unknown]
Probab=44.88 E-value=1.6e+02 Score=27.16 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=14.9
Q ss_pred hhhhhhhhhhhhh-cCcchhHHHHHHH
Q 021617 194 YVLWYRPLYRAFR-TESAMKFGWFFLF 219 (310)
Q Consensus 194 f~~WYrplY~A~r-~dss~~f~~fF~~ 219 (310)
+..++-++|.-.. .|---..+|||++
T Consensus 157 ~~~~~~~~~~~~~~~~~~gWi~WYfLc 183 (201)
T COG1422 157 LPTLFHILYHTAVFGDFLGWIGWYFLC 183 (201)
T ss_pred hHHhhhhhhhccccccchHHHHHHHHH
Confidence 3445566666555 4444567777663
No 31
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=44.60 E-value=37 Score=33.21 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=14.7
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhh
Q 021617 79 AADLKKKEKELQAKEAELRRREQDV 103 (310)
Q Consensus 79 ~~~l~~k~~EL~~kE~EL~rRE~eL 103 (310)
+.+-.++.+|++|+.+|.++||.+-
T Consensus 117 ~~~er~~~re~~r~~~e~eeRekre 141 (378)
T KOG1996|consen 117 QRDERKQRRETAREVAEIEEREKRE 141 (378)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666776666766666543
No 32
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=44.26 E-value=24 Score=35.77 Aligned_cols=56 Identities=23% Similarity=0.407 Sum_probs=37.9
Q ss_pred CccccchhhHHHhh------cCCchhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCChHH
Q 021617 240 GKSLTGVLPAVDVM------GDHALVGIFYFIGFGLFCLESLVSIWVIQ--QVYMYFRGSGKAA 295 (310)
Q Consensus 240 g~g~~G~i~ai~~~------~~~~~vgi~~~I~a~lf~~~~~~~~~~l~--~V~~~yR~~G~s~ 295 (310)
|.+.||.++++..+ ++....+.++++.+.+..+.++++-.++. ++++|||+.+.+.
T Consensus 156 G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~~yy~~~~~~~ 219 (406)
T KOG1479|consen 156 GQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPFVRYYREKAGSI 219 (406)
T ss_pred cchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchHHHHHhhhcccc
Confidence 78899998876553 33344556677777777666665555544 4899998877663
No 33
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=43.05 E-value=1.5e+02 Score=23.47 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhHHhh
Q 021617 264 FIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKREAARGAMRA 308 (310)
Q Consensus 264 ~I~a~lf~~~~~~~~~~l~~V~~~yR~~G~s~~a~~e~a~~~~~~ 308 (310)
+++++.-.+.++....-.+.-|.-||.+ ++..|+|.-...+++
T Consensus 57 ~l~~~~~~~~~~~~~~~~~~~W~~~r~t--ae~lk~e~~~~~~~~ 99 (112)
T PF14015_consen 57 ILSALAAILASLAAFFRFHERWIRYRAT--AESLKREKWLYLAGA 99 (112)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHH--HHHHHHHHHHHHhCC
Confidence 4444444455566666667777777654 344777766655543
No 34
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=41.32 E-value=53 Score=24.39 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q 021617 87 KELQAKEAELRRREQDVRRKEE 108 (310)
Q Consensus 87 ~EL~~kE~EL~rRE~eL~~re~ 108 (310)
+.|+..|++|+.-|++++.-|.
T Consensus 32 qRLa~LE~rL~~ae~ra~~ae~ 53 (60)
T PF11471_consen 32 QRLAALEQRLQAAEQRAQAAEA 53 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666655555554433
No 35
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=40.41 E-value=22 Score=38.08 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=9.1
Q ss_pred HHHHHHhhHHHHHHHHh
Q 021617 96 LRRREQDVRRKEEAAAR 112 (310)
Q Consensus 96 L~rRE~eL~~re~~~~~ 112 (310)
|+.||+||.+||+++.+
T Consensus 451 LelkEkElaerEq~l~r 467 (904)
T KOG4721|consen 451 LELKEKELAEREQALER 467 (904)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555556555555443
No 36
>COG4818 Predicted membrane protein [Function unknown]
Probab=40.00 E-value=77 Score=26.03 Aligned_cols=17 Identities=41% Similarity=1.022 Sum_probs=14.9
Q ss_pred hhhhhhhhhhhhhhhcC
Q 021617 192 GAYVLWYRPLYRAFRTE 208 (310)
Q Consensus 192 ~sf~~WYrplY~A~r~d 208 (310)
.+|++|--++|||.|.+
T Consensus 69 ~a~iLwlv~mykAyrGe 85 (105)
T COG4818 69 AAFILWLVCMYKAYRGE 85 (105)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 37889999999999976
No 37
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=39.83 E-value=4.5e+02 Score=27.22 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHhcCCChhHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcCcchhHHH-HHHHHHH
Q 021617 146 YVAFATYLGLFLCLLWNIVAVT--TAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGW-FFLFYLL 222 (310)
Q Consensus 146 ~~~y~~wl~~~~~L~~N~i~~l--~~~i~g~~~~~f~Laily~ilg~P~sf~~WYrplY~A~r~dss~~f~~-fF~~~~~ 222 (310)
|......|+.++++.++++=.+ ...+...|...+-..=+|.++-+-+.|..-|-.+-+-+..++-|+... +|+.|++
T Consensus 25 k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~ 104 (491)
T PF03219_consen 25 KFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFA 104 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4555566777777888887664 111222232223333344444333444455666666555554443222 3334433
Q ss_pred HHHHH
Q 021617 223 HIGFC 227 (310)
Q Consensus 223 ~i~f~ 227 (310)
-+++-
T Consensus 105 ~f~~v 109 (491)
T PF03219_consen 105 LFAFV 109 (491)
T ss_pred HHHHH
Confidence 33333
No 38
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=39.51 E-value=3.8e+02 Score=26.85 Aligned_cols=49 Identities=18% Similarity=0.343 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHhcCCC-hhHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 021617 152 YLGLFLCLLWNIVAVTT-AWIKGEG-VKIWFLAIIYFIAGVPGAYVLWYRPLYR 203 (310)
Q Consensus 152 wl~~~~~L~~N~i~~l~-~~i~g~~-~~~f~Laily~ilg~P~sf~~WYrplY~ 203 (310)
|.+..+.++..++-+++ ....+.+ .+..++.++-++ -....+|.||.+.
T Consensus 299 ~~f~~~~~~~~~~~~~~ig~~q~~g~~Qv~~llv~e~~---~l~~~~~~~Py~~ 349 (438)
T PF06011_consen 299 WWFFIVWLLYKFLRGIFIGFLQGSGIAQVIALLVIEVI---YLILLFILRPYMD 349 (438)
T ss_pred hhhHHHHHHHHHHHHHheeeeccCcHHHHHHHHHHHHH---HHHHHHHhChhcc
Confidence 66667777777775432 2223333 344444443322 2345689999543
No 39
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=37.94 E-value=1.1e+02 Score=26.09 Aligned_cols=20 Identities=15% Similarity=-0.109 Sum_probs=10.3
Q ss_pred cccchhhHHHhh-cCCchhhH
Q 021617 242 SLTGVLPAVDVM-GDHALVGI 261 (310)
Q Consensus 242 g~~G~i~ai~~~-~~~~~vgi 261 (310)
+.+||..+-..+ ..+....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~Rv 113 (142)
T PF11712_consen 93 FFAGWYWAGYSFGGWSFPYRV 113 (142)
T ss_pred HHHHHHHHHHhhcccchHHHH
Confidence 446776665555 33444333
No 40
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=37.55 E-value=27 Score=38.92 Aligned_cols=9 Identities=44% Similarity=0.674 Sum_probs=4.7
Q ss_pred HHHHhHHHH
Q 021617 81 DLKKKEKEL 89 (310)
Q Consensus 81 ~l~~k~~EL 89 (310)
|...+|+||
T Consensus 715 ~~~~rErel 723 (982)
T PF03154_consen 715 DPAAREREL 723 (982)
T ss_pred CHHhhhhhh
Confidence 445555554
No 41
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=37.40 E-value=78 Score=25.80 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=9.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhH
Q 021617 82 LKKKEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 82 l~~k~~EL~~kE~EL~rRE~eL~ 104 (310)
|..|.+|.+++++.++.++.+|.
T Consensus 16 l~~kr~e~~~~~~~~~~~e~~L~ 38 (126)
T PF13863_consen 16 LDTKREEIERREEQLKQREEELE 38 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 42
>COG1008 NuoM NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]
Probab=37.15 E-value=70 Score=33.26 Aligned_cols=52 Identities=19% Similarity=0.421 Sum_probs=32.5
Q ss_pred HHhhhhccCcccccCccccchhhHH----HhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021617 226 FCIFASVAPPIIFKGKSLTGVLPAV----DVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYM 286 (310)
Q Consensus 226 f~v~~aIG~P~~f~g~g~~G~i~ai----~~~~~~~~vgi~~~I~a~lf~~~~~~~~~~l~~V~~ 286 (310)
++..+.+|.| |++|++.=. ..++.+.+++++..++. .+.++.++|++|||.-
T Consensus 377 ~~~mAs~glP------G~sgFvgEFlil~G~f~~~~~~~~la~~g~---iltA~Y~L~~~~rv~f 432 (497)
T COG1008 377 LFAMASLGLP------GTSGFVGEFLILLGSFQVFPWVAFLAAFGL---ILTAVYMLWMYQRVFF 432 (497)
T ss_pred HHHHHhcCCC------ccchHHHHHHHHhhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHc
Confidence 5566788999 444555433 33444554454444444 4568899999998753
No 43
>PF03821 Mtp: Golgi 4-transmembrane spanning transporter; InterPro: IPR004687 LAPTM4 and 5 are lysosome-associated transmembrane proteins, found in mammals, insects and nematodes. ; GO: 0016021 integral to membrane
Probab=36.24 E-value=3e+02 Score=25.97 Aligned_cols=85 Identities=18% Similarity=0.161 Sum_probs=51.5
Q ss_pred hhhhhhhhhcCcc-hhHHHHHHHHHHHHHHHhhhhccCcccccCccccch---hhHHHhhcC-------C---chhhHHH
Q 021617 198 YRPLYRAFRTESA-MKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGV---LPAVDVMGD-------H---ALVGIFY 263 (310)
Q Consensus 198 YrplY~A~r~dss-~~f~~fF~~~~~~i~f~v~~aIG~P~~f~g~g~~G~---i~ai~~~~~-------~---~~vgi~~ 263 (310)
=.++|.|.+.+.. ..-.=||....+-++.+++.++| +.+.. ..-++.... + .-.--++
T Consensus 89 ~m~~Yga~~~~~~~~~llPFfclQlFDF~Ls~Lta~s--------s~~y~psi~~~~~~~~~n~fP~ke~l~~~~~~~l~ 160 (233)
T PF03821_consen 89 EMMAYGAIKRKRRPGWLLPFFCLQLFDFCLSILTACS--------SLMYVPSILNLKSQNPMNYFPYKEELLSLDPTCLM 160 (233)
T ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHh--------hhccccHHHHHHHhcccccCCcccccccCCchHHH
Confidence 4678888884433 23333666666667777777776 22321 111121111 1 1123467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021617 264 FIGFGLFCLESLVSIWVIQQVYMYFRG 290 (310)
Q Consensus 264 ~I~a~lf~~~~~~~~~~l~~V~~~yR~ 290 (310)
+|..++|.+..++=+++++-||+-||-
T Consensus 161 ~i~li~fi~vlilKaY~i~CVW~CYKy 187 (233)
T PF03821_consen 161 FIFLIFFIIVLILKAYMISCVWRCYKY 187 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888889999999999974
No 44
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=36.09 E-value=24 Score=39.20 Aligned_cols=15 Identities=47% Similarity=0.510 Sum_probs=7.9
Q ss_pred HHHhHHHH---HHHHHHH
Q 021617 82 LKKKEKEL---QAKEAEL 96 (310)
Q Consensus 82 l~~k~~EL---~~kE~EL 96 (310)
|.||.+|+ .|||+|.
T Consensus 580 LAkKRee~~ek~RReaEq 597 (982)
T PF03154_consen 580 LAKKREERVEKARREAEQ 597 (982)
T ss_pred HhhhhHHHHHHHHhhhhc
Confidence 44444443 4566665
No 45
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=36.00 E-value=49 Score=25.96 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=19.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHh--hHHHHHHHHhcCCC
Q 021617 80 ADLKKKEKELQAKEAELRRREQD--VRRKEEAAARAGIV 116 (310)
Q Consensus 80 ~~l~~k~~EL~~kE~EL~rRE~e--L~~re~~~~~~g~~ 116 (310)
++|.+..++|++..++++++|++ +..-.+.++..|+.
T Consensus 1 ~eL~~~~~~l~~~~~~~~~~e~~~~~~~i~~~~~~~Gis 39 (93)
T PF00816_consen 1 KELEAQIKELEKEIEERRKQEREEAIAEIRELMAEYGIS 39 (93)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTT--
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 36777788887666666554433 33323345555644
No 46
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=35.93 E-value=2e+02 Score=22.14 Aligned_cols=58 Identities=14% Similarity=0.345 Sum_probs=38.1
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCccCCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 021617 79 AADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLC 158 (310)
Q Consensus 79 ~~~l~~k~~EL~~kE~EL~rRE~eL~~re~~~~~~g~~~~~~NwPpf~P~~yhDI~~EIP~~~q~~v~~~y~~wl~~~~~ 158 (310)
.+|.++-++.|+.-|+.++.-..|+.+|. | ...=|-+=++|.+-+++.+.
T Consensus 11 ~~~~~~i~~rLd~iEeKvEf~~~Ei~Qr~------G------------------------kkiGRDiGIlYG~v~Glii~ 60 (70)
T PF04210_consen 11 PDDFNEIMKRLDEIEEKVEFTNAEIAQRA------G------------------------KKIGRDIGILYGLVIGLIIF 60 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH------h------------------------HHhhhHHHHHHHHHHHHHHH
Confidence 35666677777777777777777777664 2 12223356788888877776
Q ss_pred HHHHHHHH
Q 021617 159 LLWNIVAV 166 (310)
Q Consensus 159 L~~N~i~~ 166 (310)
+++..+.+
T Consensus 61 ~~~~~l~~ 68 (70)
T PF04210_consen 61 IIYIVLSS 68 (70)
T ss_pred HHHHHHHH
Confidence 66666554
No 47
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=35.63 E-value=2.8e+02 Score=26.16 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHc
Q 021617 274 SLVSIWVIQQVYMYFR 289 (310)
Q Consensus 274 ~~~~~~~l~~V~~~yR 289 (310)
++..++++|-|+.|+|
T Consensus 202 ~~G~fI~irsi~dY~r 217 (233)
T PF10176_consen 202 AFGWFIFIRSIIDYWR 217 (233)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334455566666664
No 48
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=35.38 E-value=86 Score=25.11 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021617 265 IGFGLFCLESLVSIWVIQQVYMYFRG 290 (310)
Q Consensus 265 I~a~lf~~~~~~~~~~l~~V~~~yR~ 290 (310)
|..++.++.+++..|+++|+++.-|.
T Consensus 6 iv~~~~~v~~~i~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 6 IVGGVGAVVALILAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677788999999999887
No 49
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=34.58 E-value=85 Score=24.85 Aligned_cols=39 Identities=15% Similarity=0.047 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhcCcchhHHHH
Q 021617 178 IWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAMKFGWF 216 (310)
Q Consensus 178 ~f~Laily~ilg~P~sf~~WYrplY~A~r~dss~~f~~f 216 (310)
--+++.+|+++..++.|.-==.++|++-+-+.-+-|+.-
T Consensus 21 y~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~lv 59 (81)
T PF10716_consen 21 YAALAGLYLLVVPLILYFWMNKRWYVMSSFERLFMYFLV 59 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888997666665555445678888776655444433
No 50
>PF09036 Bcr-Abl_Oligo: Bcr-Abl oncoprotein oligomerisation domain; InterPro: IPR015123 This entry represents the oligomerisation domain of the breakpoint cluster region oncoprotein Bcr, and the Bcr/Abl (Abelson-leukemia-virus) fusion protein created by a reciprocal (9;22) fusion []. Brc displays serine/threonine protein kinase activity (2.7.11.1 from EC), acting as a GTPase-activating protein for RAC1 and CDC42. Brc promotes the exchange of RAC or CDC42-bound GDP by GTP, thereby activating them []. The Bcr/Abl fusion protein loses some of the regulatory function of Bcr with regards to small Rho-like GTPases with negative consequences on cell motility, in particular on the capacity to adhere to endothelial cells []. The Bcr, Bcr/Abl oncoprotein oligomerisation domain consists of a short N-terminal helix (alpha-1), a flexible loop and a long C-terminal helix (alpha-2). Together these form an N-shaped structure, with the loop allowing the two helices to assume a parallel orientation. The monomeric domains associate into a dimer through the formation of an antiparallel coiled coil between the alpha-2 helices and domain swapping of two alpha-1 helices, where one alpha-1 helix swings back and packs against the alpha-2 helix from the second monomer. Two dimers then associate into a tetramer. The oligomerisation domain is essential for the oncogenicity of the Bcr-Abl protein []. ; GO: 0004674 protein serine/threonine kinase activity, 0005096 GTPase activator activity, 0006468 protein phosphorylation, 0007165 signal transduction; PDB: 1K1F_C.
Probab=34.22 E-value=61 Score=25.32 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=17.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhH
Q 021617 82 LKKKEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 82 l~~k~~EL~~kE~EL~rRE~eL~ 104 (310)
+.--+.||++..+.++|.|+|+.
T Consensus 28 vgd~e~eLerCK~sirrLeqevn 50 (79)
T PF09036_consen 28 VGDIEQELERCKASIRRLEQEVN 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHH
Confidence 33366788888888888888885
No 51
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=33.95 E-value=72 Score=27.66 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=11.8
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 021617 80 ADLKKKEKELQAKEAELRR 98 (310)
Q Consensus 80 ~~l~~k~~EL~~kE~EL~r 98 (310)
++.+++++|++++.+|+++
T Consensus 43 ~~~~~~~~~~~~~~~~l~~ 61 (168)
T PF01956_consen 43 DKYQKRMKEFQKRYRELRK 61 (168)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666654
No 52
>COG4652 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.56 E-value=4.8e+02 Score=28.26 Aligned_cols=38 Identities=8% Similarity=0.034 Sum_probs=22.4
Q ss_pred hcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021617 253 MGDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMYFRG 290 (310)
Q Consensus 253 ~~~~~~vgi~~~I~a~lf~~~~~~~~~~l~~V~~~yR~ 290 (310)
++.+...=.+|++..++=++..+..+..+...+..|+.
T Consensus 274 IKgK~~~K~~m~l~~v~k~v~~liv~s~l~~~l~~~~~ 311 (657)
T COG4652 274 IKGKLPFKRSMFLLTVCKLVAVLIVVSSLAQNLYFYTE 311 (657)
T ss_pred hcCCCccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444566666666666666666666666666653
No 53
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=33.54 E-value=2.3e+02 Score=26.60 Aligned_cols=82 Identities=6% Similarity=0.132 Sum_probs=0.0
Q ss_pred hhhhhhhhhcCcchhHHHHHHHHHHHHHHHhhhhccCcccccCccccc------hhhHHHhhcCCchhhHHHHHHHHHHH
Q 021617 198 YRPLYRAFRTESAMKFGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTG------VLPAVDVMGDHALVGIFYFIGFGLFC 271 (310)
Q Consensus 198 YrplY~A~r~dss~~f~~fF~~~~~~i~f~v~~aIG~P~~f~g~g~~G------~i~ai~~~~~~~~vgi~~~I~a~lf~ 271 (310)
|+-.++-+.++ |=-++++.++|.++|.+|.|+ ..+-| +|+.--=-+.+.+-++.++.=.+=+.
T Consensus 143 y~k~~k~~~~g-------i~aml~Vf~LF~lvmt~g~d~----m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~ 211 (230)
T PF03904_consen 143 YQKRQKSMYKG-------IGAMLFVFMLFALVMTIGSDF----MDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYI 211 (230)
T ss_pred HHHHHHHHHHh-------HHHHHHHHHHHHHHHHhcccc----hhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHH
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q 021617 272 LESLVSIWVIQQVYMYFRG 290 (310)
Q Consensus 272 ~~~~~~~~~l~~V~~~yR~ 290 (310)
+...+.+|++-.+-.-|..
T Consensus 212 ~~ig~~i~l~~~~~~~~~~ 230 (230)
T PF03904_consen 212 FAIGLFIYLYEWIRAKFHD 230 (230)
T ss_pred HHHHHHHHHHHHHHHHhcC
No 54
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=33.16 E-value=96 Score=25.64 Aligned_cols=25 Identities=36% Similarity=0.300 Sum_probs=16.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhHH
Q 021617 81 DLKKKEKELQAKEAELRRREQDVRR 105 (310)
Q Consensus 81 ~l~~k~~EL~~kE~EL~rRE~eL~~ 105 (310)
-++++.++|+++.++|++.++.|+.
T Consensus 80 ~l~~~~~~l~~~i~~L~~~~~~L~~ 104 (124)
T TIGR02051 80 LASRKLKSVQAKMADLLRIERLLEE 104 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777776666654
No 55
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=33.05 E-value=43 Score=35.94 Aligned_cols=21 Identities=43% Similarity=0.585 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q 021617 88 ELQAKEAELRRREQDVRRKEE 108 (310)
Q Consensus 88 EL~~kE~EL~rRE~eL~~re~ 108 (310)
+|+-||.||.+||+.|.+|+.
T Consensus 450 qLelkEkElaerEq~l~rr~p 470 (904)
T KOG4721|consen 450 QLELKEKELAEREQALERRCP 470 (904)
T ss_pred HHHHHHHHHHHHHHHHHhhCC
Confidence 456677777777777766654
No 56
>PRK14217 camphor resistance protein CrcB; Provisional
Probab=33.02 E-value=3.1e+02 Score=23.36 Aligned_cols=41 Identities=7% Similarity=-0.024 Sum_probs=25.9
Q ss_pred ccccchhhHHHhh--------cC-CchhhHHHHHHHHHHHHHHHHHHHHH
Q 021617 241 KSLTGVLPAVDVM--------GD-HALVGIFYFIGFGLFCLESLVSIWVI 281 (310)
Q Consensus 241 ~g~~G~i~ai~~~--------~~-~~~vgi~~~I~a~lf~~~~~~~~~~l 281 (310)
.|+||=.++.+.| .+ +...++.+++.....++.+++..+.+
T Consensus 73 tGflGgfTTFSTf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l 122 (134)
T PRK14217 73 TGFLGAFTTFSSFAAESLFMFEQGYWFKLITNILVNNVGSLSMVFIGTLV 122 (134)
T ss_pred HHHhchhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666665554 23 34567788888888777766655433
No 57
>PRK10780 periplasmic chaperone; Provisional
Probab=32.73 E-value=1e+02 Score=26.71 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=6.0
Q ss_pred HHhHHHHHHHHHHH
Q 021617 83 KKKEKELQAKEAEL 96 (310)
Q Consensus 83 ~~k~~EL~~kE~EL 96 (310)
.++++||.++++++
T Consensus 86 ~~~~~el~~~~~~~ 99 (165)
T PRK10780 86 TKLEKDVMAQRQTF 99 (165)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 58
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=32.31 E-value=59 Score=27.15 Aligned_cols=21 Identities=14% Similarity=0.536 Sum_probs=11.2
Q ss_pred HhHHHHHHHHHHHHHHHHhhH
Q 021617 84 KKEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 84 ~k~~EL~~kE~EL~rRE~eL~ 104 (310)
.++++.+.+++++.+||.||+
T Consensus 67 e~q~ki~~~~~kV~ere~eL~ 87 (115)
T PF06476_consen 67 ERQQKIAEKQQKVAEREAELK 87 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554
No 59
>PHA03237 envelope glycoprotein M; Provisional
Probab=32.18 E-value=3.5e+02 Score=27.70 Aligned_cols=27 Identities=15% Similarity=0.421 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021617 145 QYVAFATYLGLFLCLLWNIVAVTTAWI 171 (310)
Q Consensus 145 v~~~y~~wl~~~~~L~~N~i~~l~~~i 171 (310)
=++.+..|+..++|.++-++..++.+|
T Consensus 18 D~i~~r~W~~qv~~f~l~~l~~~v~lI 44 (424)
T PHA03237 18 DYIHWRLWLVQVACFALAVLVLFITLI 44 (424)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788898888887777776654444
No 60
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=32.00 E-value=3e+02 Score=28.08 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021617 142 QRLQYVAFATYLGLFLCLLWNIVAVTTAWI 171 (310)
Q Consensus 142 q~~v~~~y~~wl~~~~~L~~N~i~~l~~~i 171 (310)
..+.+.=+|=|..+.+.|++.++.|+++.+
T Consensus 199 ~~~~~~E~~Rw~~~l~lL~~~lviC~~~l~ 228 (418)
T cd07912 199 DQVSLYESYRWLAYLGLLSLLLVICLVLLV 228 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788899999999999999987665
No 61
>PF14851 FAM176: FAM176 family
Probab=31.42 E-value=46 Score=29.30 Aligned_cols=16 Identities=38% Similarity=0.642 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhH
Q 021617 88 ELQAKEAELRRREQDVR 104 (310)
Q Consensus 88 EL~~kE~EL~rRE~eL~ 104 (310)
||+ |++.|++||+.++
T Consensus 118 ~~e-~A~rlEeRe~iir 133 (153)
T PF14851_consen 118 ELE-RAQRLEERERIIR 133 (153)
T ss_pred HHH-HHHHHHHHHHHHH
Confidence 443 5566677777665
No 62
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.12 E-value=63 Score=23.46 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=12.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhhH
Q 021617 83 KKKEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 83 ~~k~~EL~~kE~EL~rRE~eL~ 104 (310)
.+...|+.+.++|+++.|+|++
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666665554
No 63
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=30.75 E-value=59 Score=32.18 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=25.1
Q ss_pred CcccchHHHHHhHHHHHHHHHHHHHHHHhhHH
Q 021617 74 IPLDTAADLKKKEKELQAKEAELRRREQDVRR 105 (310)
Q Consensus 74 ~~~~~~~~l~~k~~EL~~kE~EL~rRE~eL~~ 105 (310)
.+..+-++|++-++|+..||+||+.+.++|++
T Consensus 340 ~~~yTeEEL~~fE~e~A~ke~El~~ka~~lqq 371 (442)
T KOG3866|consen 340 KKVYTEEELQQFEREYAQKEQELQHKAEALQQ 371 (442)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhchHHHhhC
Confidence 34567788999999999999999887766654
No 64
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=29.92 E-value=58 Score=30.37 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHhhH
Q 021617 85 KEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 85 k~~EL~~kE~EL~rRE~eL~ 104 (310)
|-+||++|-+||++..+||+
T Consensus 19 kvreleakveelnkereelk 38 (347)
T PF06673_consen 19 KVRELEAKVEELNKEREELK 38 (347)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 44577777777765333454
No 65
>PF12737 Mating_C: C-terminal domain of homeodomain 1; InterPro: IPR024441 Mating in fungi is controlled by the loci that determine the mating type of an individual, and only individuals with differing mating types can mate. Basidiomycete fungi have evolved a unique mating system, termed tetrapolar or bifactorial incompatibility, in which mating type is determined by two unlinked loci; compatibility at both loci is required for mating to occur. The multi-allelic tetrapolar mating system is considered to be a novel innovation that could have only evolved once, and is thus unique to the mushroom fungi. This domain is found in the C-terminal of some mating-type proteins.
Probab=29.75 E-value=51 Score=33.53 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHH
Q 021617 85 KEKELQAKEAELRRREQDVRRKEEAA 110 (310)
Q Consensus 85 k~~EL~~kE~EL~rRE~eL~~re~~~ 110 (310)
.++|+++|.+||+..|++.++-+.++
T Consensus 393 ~~~~~~AK~reL~eLeAq~~aL~AEL 418 (419)
T PF12737_consen 393 PEAEREAKRRELEELEAQARALRAEL 418 (419)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 37788999999999888887765443
No 66
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.32 E-value=91 Score=27.62 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=13.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHH
Q 021617 82 LKKKEKELQAKEAELRRREQDVRR 105 (310)
Q Consensus 82 l~~k~~EL~~kE~EL~rRE~eL~~ 105 (310)
.++.++|+++.++||++.|.|+..
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~ 179 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEA 179 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666555543
No 67
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=29.29 E-value=9.4e+02 Score=27.80 Aligned_cols=13 Identities=23% Similarity=0.123 Sum_probs=8.2
Q ss_pred cchHHHHHHHHHH
Q 021617 136 EIPIHLQRLQYVA 148 (310)
Q Consensus 136 EIP~~~q~~v~~~ 148 (310)
.|-....|+++.+
T Consensus 775 ~Is~QslrL~r~~ 787 (1109)
T PRK10929 775 AISAQSLRLVRSI 787 (1109)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666777663
No 68
>PRK14210 camphor resistance protein CrcB; Provisional
Probab=29.22 E-value=3.4e+02 Score=22.72 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=26.2
Q ss_pred ccccchhhHHHhh--------cCC-chhhHHHHHHHHHHHHHHHHHHHHH
Q 021617 241 KSLTGVLPAVDVM--------GDH-ALVGIFYFIGFGLFCLESLVSIWVI 281 (310)
Q Consensus 241 ~g~~G~i~ai~~~--------~~~-~~vgi~~~I~a~lf~~~~~~~~~~l 281 (310)
.|+||=.++.+.+ +++ ...++.+++....-++.+++..+.+
T Consensus 73 tGf~GgfTTFSTf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l 122 (127)
T PRK14210 73 VGFCGGFTTFSTLANDSLSLLKGGFYGIFTFYVFISILLGLLAVLAGGYL 122 (127)
T ss_pred hhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777766654 233 3457788888887777666655433
No 69
>PF05178 Kri1: KRI1-like family; InterPro: IPR018034 The Kri1 protein is also known as KRR1-interacting protein 1. The Saccharomyces cerevisiae member of this family is found to be required for the assembly of preribosomal 40S subunits in the nucleolus []. KRR1 is highly expressed in dividing cells and its expression ceases almost completely when cells enter the stationary phase.
Probab=29.04 E-value=69 Score=26.17 Aligned_cols=15 Identities=60% Similarity=0.815 Sum_probs=9.4
Q ss_pred HhHHHHHHHHHHHHH
Q 021617 84 KKEKELQAKEAELRR 98 (310)
Q Consensus 84 ~k~~EL~~kE~EL~r 98 (310)
||++|-.+|++||+|
T Consensus 3 RK~~Ek~~k~eElkr 17 (101)
T PF05178_consen 3 RKEEEKQEKEEELKR 17 (101)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666667777664
No 70
>PHA02148 hypothetical protein
Probab=28.81 E-value=1.6e+02 Score=24.05 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=9.2
Q ss_pred HHHHHhhHHHHHHHH
Q 021617 97 RRREQDVRRKEEAAA 111 (310)
Q Consensus 97 ~rRE~eL~~re~~~~ 111 (310)
++||.||++.|.+++
T Consensus 58 ~~R~NEL~~HE~Air 72 (110)
T PHA02148 58 KSRENELRRHEAAIR 72 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457777776665444
No 71
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=28.67 E-value=4.4e+02 Score=23.78 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=18.5
Q ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 021617 137 IPIHLQRLQYV-AFATYLGLFLCLLWNIVAVTTAW 170 (310)
Q Consensus 137 IP~~~q~~v~~-~y~~wl~~~~~L~~N~i~~l~~~ 170 (310)
+|++.||+.+. --..|+.+-+=+++-+++.++.+
T Consensus 3 ~~~~~~~~a~~lr~~Gwi~FW~QlvLgvVs~~iL~ 37 (183)
T PF12263_consen 3 VPPALQRIARALRRLGWIGFWIQLVLGVVSAVILL 37 (183)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556654422 22346666666777777654333
No 72
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=28.48 E-value=39 Score=32.56 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHH
Q 021617 86 EKELQAKEAELRRREQDVRRK 106 (310)
Q Consensus 86 ~~EL~~kE~EL~rRE~eL~~r 106 (310)
|||++.-|+||++||.++++.
T Consensus 160 ~eE~eEVe~el~~~~~~~~~~ 180 (294)
T KOG2881|consen 160 QEELEEVEAELAKREDELDRL 180 (294)
T ss_pred hhhHHHHHHHHHhccchhhhh
Confidence 667777777777777766653
No 73
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.27 E-value=1.5e+02 Score=32.89 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=12.9
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 021617 81 DLKKKEKELQAKEAELRR 98 (310)
Q Consensus 81 ~l~~k~~EL~~kE~EL~r 98 (310)
|.++-+|+|.|||.|+++
T Consensus 1106 et~rlre~L~rke~E~Qa 1123 (1226)
T KOG4279|consen 1106 ETERLREILDRKEREYQA 1123 (1226)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 556667778888877765
No 74
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.24 E-value=1.6e+02 Score=34.32 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCC---hhHHHHH-----HHHHHhhhhhhhhhhhhh
Q 021617 139 IHLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIK----------GEG---VKIWFLA-----IIYFIAGVPGAYVLWYRP 200 (310)
Q Consensus 139 ~~~q~~v~~~y~~wl~~~~~L~~N~i~~l~~~i~----------g~~---~~~f~La-----ily~ilg~P~sf~~WYrp 200 (310)
...|.++..++..+|..++....|. +...-.+. .++ -..+.+| |-|-++..-+.|+|||.|
T Consensus 1147 ~~~q~lqn~m~a~yma~v~~~~~~~-~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~ 1225 (1391)
T KOG0065|consen 1147 HNVQGLQNAMGAAYMATVFSGPNNN-QLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYP 1225 (1391)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhhhh-hhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeee
Confidence 5678888899998885544322222 21111221 111 1122222 356666667778899988
Q ss_pred h
Q 021617 201 L 201 (310)
Q Consensus 201 l 201 (310)
+
T Consensus 1226 i 1226 (1391)
T KOG0065|consen 1226 I 1226 (1391)
T ss_pred c
Confidence 4
No 75
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=27.95 E-value=1.2e+02 Score=25.38 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=17.3
Q ss_pred cchHHHHHhHHHHHHHHHHHHH
Q 021617 77 DTAADLKKKEKELQAKEAELRR 98 (310)
Q Consensus 77 ~~~~~l~~k~~EL~~kE~EL~r 98 (310)
..++...+++.++..|++||++
T Consensus 67 e~q~ki~~~~~kV~ere~eL~e 88 (115)
T PF06476_consen 67 ERQQKIAEKQQKVAEREAELKE 88 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888889999999865
No 76
>PRK14215 camphor resistance protein CrcB; Provisional
Probab=27.83 E-value=3.7e+02 Score=22.57 Aligned_cols=42 Identities=17% Similarity=0.036 Sum_probs=26.5
Q ss_pred ccccchhhHHHhhc--------CC-chhhHHHHHHHHHHHHHHHHHHHHHH
Q 021617 241 KSLTGVLPAVDVMG--------DH-ALVGIFYFIGFGLFCLESLVSIWVIQ 282 (310)
Q Consensus 241 ~g~~G~i~ai~~~~--------~~-~~vgi~~~I~a~lf~~~~~~~~~~l~ 282 (310)
.|+||=.++.+.|. ++ ...++.+++..+.-++.+++..+.+-
T Consensus 71 tGf~GgfTTFSTf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l~ 121 (126)
T PRK14215 71 TGLLGGFTTFSTFGYESYSLLSSGNWLAAGGYVVGSVGGGLIAVIIGAGLG 121 (126)
T ss_pred hHHhcccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677666665542 23 34577788888877777766655443
No 77
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=27.75 E-value=98 Score=28.77 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHH
Q 021617 85 KEKELQAKEAELR 97 (310)
Q Consensus 85 k~~EL~~kE~EL~ 97 (310)
..|||.|+|+++.
T Consensus 24 A~EElRk~eeqi~ 36 (214)
T PF07795_consen 24 ANEELRKREEQIA 36 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666665553
No 78
>PHA03242 envelope glycoprotein M; Provisional
Probab=27.61 E-value=6.6e+02 Score=25.83 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021617 144 LQYVAFATYLGLFLCLLWNIVAVTTAWI 171 (310)
Q Consensus 144 ~v~~~y~~wl~~~~~L~~N~i~~l~~~i 171 (310)
.=++.+..|+..++|.++-++..++.+|
T Consensus 18 ~D~i~~r~W~~qv~~f~l~~l~~~v~lI 45 (428)
T PHA03242 18 VARVAWRVWCVQVGAFAVSALCLLGTLI 45 (428)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788898888877777766654444
No 79
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=27.60 E-value=1.1e+02 Score=27.81 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=12.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHh
Q 021617 82 LKKKEKELQAKEAELRRREQD 102 (310)
Q Consensus 82 l~~k~~EL~~kE~EL~rRE~e 102 (310)
-+|.|||++++.++.++++++
T Consensus 89 R~RmQEE~dakA~~~kEKq~q 109 (190)
T PF06936_consen 89 RRRMQEELDAKAEEYKEKQKQ 109 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355677777776665544333
No 80
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=27.43 E-value=1.5e+02 Score=30.90 Aligned_cols=69 Identities=28% Similarity=0.410 Sum_probs=44.0
Q ss_pred ccCccc--chHHHHHhHHHHHHHHHHHHHHHHhhHH-HHHHHHhcCCCCccCCCCC-------CcccccccccccchHHH
Q 021617 72 IDIPLD--TAADLKKKEKELQAKEAELRRREQDVRR-KEEAAARAGIVLEEKNWPP-------FFPIIHHDIANEIPIHL 141 (310)
Q Consensus 72 ~~~~~~--~~~~l~~k~~EL~~kE~EL~rRE~eL~~-re~~~~~~g~~~~~~NwPp-------f~P~~yhDI~~EIP~~~ 141 (310)
.++|.- ..+...+..+|+.|||+|+.|..++.+. -+.+++..|+. ..|-.. -.|-+|..|..+| ...
T Consensus 124 YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~--G~nir~ELl~l~~~LP~~~~~i~~~i-~~l 200 (507)
T PF05600_consen 124 YEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIK--GENIREELLELVKELPSLFDEIVEAI-SDL 200 (507)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCc--cchhHHHHHHHHHhhHHHHHHHHHHH-HHH
Confidence 455552 2345677788888888888887777654 44567777764 345543 3577777777666 334
Q ss_pred HH
Q 021617 142 QR 143 (310)
Q Consensus 142 q~ 143 (310)
+.
T Consensus 201 ~~ 202 (507)
T PF05600_consen 201 QE 202 (507)
T ss_pred HH
Confidence 44
No 81
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=27.37 E-value=4.5e+02 Score=23.47 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcCcch-hHHHHHHHHH
Q 021617 143 RLQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFRTESAM-KFGWFFLFYL 221 (310)
Q Consensus 143 ~~v~~~y~~wl~~~~~L~~N~i~~l~~~i~g~~~~~f~Laily~ilg~P~sf~~WYrplY~A~r~dss~-~f~~fF~~~~ 221 (310)
-+.-+++.-|....+..+..++.++ +++.++...++.-++- .+.|...+-| -+||..++.... .|..-|+.-+
T Consensus 71 ~l~~l~lGp~~a~~~~~~vll~qal--~fg~gg~~~lG~N~l~--m~~~~~~~~~--~~~~~l~~~~~~~~~~~~F~ag~ 144 (205)
T PF01891_consen 71 TLLTLMLGPWLAALAMAIVLLLQAL--LFGDGGWTALGANALN--MGVPPVLVSY--LLFRLLRRKFPRNIFVAGFLAGF 144 (205)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH--HHhcCcHHHHHHHHHH--HHHHHHHHHH--HHHHHHhhcccccHHHHHHHHHH
Confidence 3567788878877776666666543 2344555555555554 3444443433 345544332111 1111122111
Q ss_pred HHHHHHhhhhccCcccccCccccchhhHHHhh----cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021617 222 LHIGFCIFASVAPPIIFKGKSLTGVLPAVDVM----GDHALVGIFYFIGFGLFCLESLVSIWVIQQVYMY 287 (310)
Q Consensus 222 ~~i~f~v~~aIG~P~~f~g~g~~G~i~ai~~~----~~~~~vgi~~~I~a~lf~~~~~~~~~~l~~V~~~ 287 (310)
+ .+..+. ..++....+.-. .-...+..++..-..+.-.|++++..++.-..++
T Consensus 145 l----~~~~~~---------~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~Eg~ltg~~v~~l~~~ 201 (205)
T PF01891_consen 145 L----SVLLAA---------LAVSLVLGLSGTAGDYPWMALVQAYLPSHLLLAFPEGFLTGMVVTFLVVY 201 (205)
T ss_pred H----HHHHHH---------HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 221111 122333333311 1122344455555555667998888877654443
No 82
>PF13346 ABC2_membrane_5: ABC-2 family transporter protein
Probab=27.24 E-value=3.9e+02 Score=22.72 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=11.2
Q ss_pred hhhhhhhhhhhhhhcCcch
Q 021617 193 AYVLWYRPLYRAFRTESAM 211 (310)
Q Consensus 193 sf~~WYrplY~A~r~dss~ 211 (310)
.+..-+-|+|-.+..+++-
T Consensus 129 i~~~i~lp~~~~~g~~~~~ 147 (206)
T PF13346_consen 129 IFYSIFLPLYYKFGYKKGR 147 (206)
T ss_pred HHHHHHHHHHHHhcchhHH
Confidence 3444566777777766543
No 83
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=27.19 E-value=56 Score=33.94 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=14.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHH
Q 021617 81 DLKKKEKELQAKEAELRRREQDVRRK 106 (310)
Q Consensus 81 ~l~~k~~EL~~kE~EL~rRE~eL~~r 106 (310)
++++|-|||+++-+||++...++++|
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Confidence 44446666666666666554445443
No 84
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=26.75 E-value=1.3e+02 Score=32.29 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=16.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhHH
Q 021617 81 DLKKKEKELQAKEAELRRREQDVRR 105 (310)
Q Consensus 81 ~l~~k~~EL~~kE~EL~rRE~eL~~ 105 (310)
...++|||..+.+.||++.-+++.+
T Consensus 545 ~~~~~eke~~~L~~~lE~Ls~~~~e 569 (671)
T PF15390_consen 545 NNLQKEKETSQLSKELERLSRNFTE 569 (671)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888776555543
No 85
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=26.72 E-value=4.6e+02 Score=23.41 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHH
Q 021617 85 KEKELQAKEAELRRREQDVRRKEE 108 (310)
Q Consensus 85 k~~EL~~kE~EL~rRE~eL~~re~ 108 (310)
+.+++++|..+++| ++||.-.+
T Consensus 4 ~~~~~e~R~l~~~r--~qLka~S~ 25 (175)
T PF07856_consen 4 REEDLEWRRLDLSR--EQLKASSN 25 (175)
T ss_pred cHHHHHHHHHHHHH--HHHHHHHH
Confidence 45667777777665 34664333
No 86
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=26.68 E-value=1.1e+02 Score=25.20 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=13.8
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 021617 80 ADLKKKEKELQAKEAELRR 98 (310)
Q Consensus 80 ~~l~~k~~EL~~kE~EL~r 98 (310)
++|+.|+.+|.+.|+|++-
T Consensus 33 e~Lk~ke~~LRk~eqE~dS 51 (102)
T PF10205_consen 33 EQLKEKEQALRKLEQENDS 51 (102)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777788777777753
No 87
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=26.36 E-value=1.9e+02 Score=20.78 Aligned_cols=37 Identities=27% Similarity=0.553 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 021617 260 GIFYFIGFGLFCLESLVSIWVIQQVYMYFRGSGKAAEMKR 299 (310)
Q Consensus 260 gi~~~I~a~lf~~~~~~~~~~l~~V~~~yR~~G~s~~a~~ 299 (310)
|.-.+|+..+|++.. -+|...|. .+||.+..|.|+|-
T Consensus 12 ~F~~lIC~Fl~~~~~--F~~F~~Kq-ilfr~~~~snear~ 48 (54)
T PF06716_consen 12 AFGFLICLFLFCLVV--FIWFVYKQ-ILFRNNPQSNEARF 48 (54)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHH-HHHccCCCcchhhc
Confidence 333455555554433 33333322 47898888877763
No 88
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=26.19 E-value=3.2e+02 Score=21.44 Aligned_cols=60 Identities=18% Similarity=0.328 Sum_probs=38.4
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCccCCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHH
Q 021617 79 AADLKKKEKELQAKEAELRRREQDVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFATYLGLFLC 158 (310)
Q Consensus 79 ~~~l~~k~~EL~~kE~EL~rRE~eL~~re~~~~~~g~~~~~~NwPpf~P~~yhDI~~EIP~~~q~~v~~~y~~wl~~~~~ 158 (310)
.+|.++-++.|+.-|+.++.--.|+.+|. | +..=|-+=++|..-+++.++
T Consensus 14 ~~d~~~i~~rLD~iEeKVEftn~Ei~Qr~------G------------------------kkvGRDiGIlYG~viGlli~ 63 (77)
T PRK01026 14 PKDFKEIQKRLDEIEEKVEFTNAEIFQRI------G------------------------KKVGRDIGILYGLVIGLLIV 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------h------------------------HHhhhHHHHHHHHHHHHHHH
Confidence 44666666667666776766667776653 2 22223456888888888777
Q ss_pred HHHHHHHHHH
Q 021617 159 LLWNIVAVTT 168 (310)
Q Consensus 159 L~~N~i~~l~ 168 (310)
+++..+..++
T Consensus 64 ~i~~~~~~~~ 73 (77)
T PRK01026 64 LVYIILSPIF 73 (77)
T ss_pred HHHHHHHHHH
Confidence 7777666544
No 89
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=25.98 E-value=2.4e+02 Score=24.70 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhhhccCcccccCccccchhhHHHhhc--CCchhhHHHHHHHHHHHHHHHHHHH
Q 021617 214 GWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLPAVDVMG--DHALVGIFYFIGFGLFCLESLVSIW 279 (310)
Q Consensus 214 ~~fF~~~~~~i~f~v~~aIG~P~~f~g~g~~G~i~ai~~~~--~~~~vgi~~~I~a~lf~~~~~~~~~ 279 (310)
.||.+.-.+|++-.+...+|.- +|++.. ..-. .+..=.++.++..++.+++.++.++
T Consensus 67 ~~~~~H~~~q~~~~~~~i~g~~--------~~~~~~-~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~ 125 (191)
T cd08760 67 VWFYLHAGLQLLAVLLAIAGFV--------LGIVLV-QGGGGSLNNAHAILGIIVLALAILQPLLGLL 125 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--------HHHHhh-ccCCCCCcCcchhhhHHHHHHHHHHHHHHHh
Confidence 4566666677755555555421 233321 0001 1122245556666677777776663
No 90
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=25.98 E-value=1.4e+02 Score=23.23 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=12.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhh
Q 021617 81 DLKKKEKELQAKEAELRRREQDV 103 (310)
Q Consensus 81 ~l~~k~~EL~~kE~EL~rRE~eL 103 (310)
+..++-+||.++.+.|++|=+-|
T Consensus 39 ~d~~~L~~L~~~a~rm~eRI~tL 61 (75)
T TIGR02976 39 DDQALLQELYAKADRLEERIDTL 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655554433
No 91
>PRK14227 camphor resistance protein CrcB; Provisional
Probab=25.94 E-value=3.9e+02 Score=22.29 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=26.2
Q ss_pred ccccchhhHHHhh--------cCC-chhhHHHHHHHHHHHHHHHHHHHHH
Q 021617 241 KSLTGVLPAVDVM--------GDH-ALVGIFYFIGFGLFCLESLVSIWVI 281 (310)
Q Consensus 241 ~g~~G~i~ai~~~--------~~~-~~vgi~~~I~a~lf~~~~~~~~~~l 281 (310)
.|+||=.++.+.+ +++ ...++.+++..+.-++.++...+.+
T Consensus 71 tGf~GgfTTFSTf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~~~~lG~~l 120 (124)
T PRK14227 71 VGFCGSFTTFSSFTYETIALFQDGDYTKAMLNIILNNVLSITSAFSGIVL 120 (124)
T ss_pred hhHhcccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777766655 333 3457778888887777666655433
No 92
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=25.79 E-value=56 Score=30.47 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=11.8
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 021617 80 ADLKKKEKELQAKEAELR 97 (310)
Q Consensus 80 ~~l~~k~~EL~~kE~EL~ 97 (310)
.||+.|-+||.+..+||+
T Consensus 21 releakveelnkereelk 38 (347)
T PF06673_consen 21 RELEAKVEELNKEREELK 38 (347)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367777777766666664
No 93
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.32 E-value=65 Score=25.09 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhhhccCcccccC---ccccchhhHHHh
Q 021617 216 FFLFYLLHIGFCIFASVAPPIIFKG---KSLTGVLPAVDV 252 (310)
Q Consensus 216 fF~~~~~~i~f~v~~aIG~P~~f~g---~g~~G~i~ai~~ 252 (310)
|++.|.+.+++-+.|+||.- ++. .|+||=|.++.+
T Consensus 4 ~lltFg~Fllvi~gMsiG~I--~krk~I~GSCGGi~alGi 41 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYI--FKRKSIKGSCGGIAALGI 41 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhh--eeccccccccccHHhhcc
Confidence 56667777778888888852 443 688998887653
No 94
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=25.22 E-value=1.7e+02 Score=24.69 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=5.9
Q ss_pred cccccccccchHH
Q 021617 128 IIHHDIANEIPIH 140 (310)
Q Consensus 128 ~~yhDI~~EIP~~ 140 (310)
++|+|=..||-.+
T Consensus 140 vly~~~~~DIT~~ 152 (158)
T PF03938_consen 140 VLYADPAYDITDE 152 (158)
T ss_dssp EEEE-TTSE-HHH
T ss_pred eEeeCCCCChHHH
Confidence 5666555555443
No 95
>PRK14198 camphor resistance protein CrcB; Provisional
Probab=25.21 E-value=4.1e+02 Score=22.22 Aligned_cols=41 Identities=10% Similarity=0.163 Sum_probs=24.9
Q ss_pred ccccchhhHHHhh--------cCC-chhhHHHHHHHHHHHHHHHHHHHHH
Q 021617 241 KSLTGVLPAVDVM--------GDH-ALVGIFYFIGFGLFCLESLVSIWVI 281 (310)
Q Consensus 241 ~g~~G~i~ai~~~--------~~~-~~vgi~~~I~a~lf~~~~~~~~~~l 281 (310)
.|+||=.++.+.+ +++ ...++.+++....-++.++...+.+
T Consensus 70 tGflGgfTTFSTf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l 119 (124)
T PRK14198 70 TGILGGYTTFSAFSLDAALLYERGALGLAALYVLGSVALGIAGLFAGLAL 119 (124)
T ss_pred HHHhcccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556655555544 333 3457788888877777666655444
No 96
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=25.12 E-value=71 Score=29.63 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=13.7
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHhh
Q 021617 78 TAADLKKKEKELQAKEAELRRREQDV 103 (310)
Q Consensus 78 ~~~~l~~k~~EL~~kE~EL~rRE~eL 103 (310)
+.++-++..++|-.||.||.|.-.+|
T Consensus 8 s~eew~~Ar~~LL~~EKeltR~~dal 33 (211)
T PF05988_consen 8 SREEWLAARDALLAREKELTRARDAL 33 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556666666666544444
No 97
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=25.09 E-value=1.2e+02 Score=21.62 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=13.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhH
Q 021617 82 LKKKEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 82 l~~k~~EL~~kE~EL~rRE~eL~ 104 (310)
+.+|-++++++-++|++.+++|+
T Consensus 41 l~~~~~~i~~~i~~L~~~~~~L~ 63 (65)
T PF09278_consen 41 LEEKLEEIEEQIAELQALRAQLE 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666665555443
No 98
>PF10810 DUF2545: Protein of unknown function (DUF2545) ; InterPro: IPR024470 This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. Their sequences are highly conserved.
Probab=24.99 E-value=1.7e+02 Score=22.83 Aligned_cols=10 Identities=20% Similarity=0.032 Sum_probs=6.9
Q ss_pred HHHHHHHHHH
Q 021617 149 FATYLGLFLC 158 (310)
Q Consensus 149 y~~wl~~~~~ 158 (310)
-|+|++++++
T Consensus 2 iYlW~FL~ls 11 (80)
T PF10810_consen 2 IYLWTFLALS 11 (80)
T ss_pred chhHHHHHHH
Confidence 4788877654
No 99
>PF10268 Tmemb_161AB: Predicted transmembrane protein 161AB; InterPro: IPR019395 This entry represents a family of conserved eukaryotic proteins. Members are putative transmembrane proteins but otherwise the function is not known.
Probab=24.80 E-value=8.1e+02 Score=25.54 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhcCc
Q 021617 178 IWFLAIIYFIAGVPGAYVLWYRPLYRAFRTES 209 (310)
Q Consensus 178 ~f~Laily~ilg~P~sf~~WYrplY~A~r~ds 209 (310)
.+=++++|+++.+-.+.-+++.-.=.-++++.
T Consensus 132 e~Nisv~w~lL~v~F~lk~L~sLt~~yf~s~~ 163 (486)
T PF10268_consen 132 EFNISVVWCLLVVFFALKVLFSLTRLYFSSEE 163 (486)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34566788888777777888887777777654
No 100
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.01 E-value=1.5e+02 Score=26.75 Aligned_cols=25 Identities=12% Similarity=0.521 Sum_probs=19.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhH
Q 021617 80 ADLKKKEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 80 ~~l~~k~~EL~~kE~EL~rRE~eL~ 104 (310)
.+|.+.++.++|-.+.++++|++|.
T Consensus 18 ReLRkt~RdierdRr~me~~Ek~LE 42 (208)
T KOG3231|consen 18 RELRKTQRDIERDRRAMEKQEKQLE 42 (208)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3778888888887788888777764
No 101
>PHA01750 hypothetical protein
Probab=23.99 E-value=94 Score=23.84 Aligned_cols=18 Identities=33% Similarity=0.667 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHhhH
Q 021617 87 KELQAKEAELRRREQDVR 104 (310)
Q Consensus 87 ~EL~~kE~EL~rRE~eL~ 104 (310)
++++.|..+|++.-.|++
T Consensus 52 ~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 52 EELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 333334444443333333
No 102
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=23.93 E-value=6.9e+02 Score=24.45 Aligned_cols=57 Identities=9% Similarity=0.154 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 021617 144 LQYVAFATYLGLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFR 206 (310)
Q Consensus 144 ~v~~~y~~wl~~~~~L~~N~i~~l~~~i~g~~~~~f~Laily~ilg~P~sf~~WYrplY~A~r 206 (310)
+.-+++.-|.......+.+++-++ +++.++...++.-++ ..+.+..++.|+ +||..+
T Consensus 73 L~alllGP~~A~la~~ivLllQal--lfg~GGl~alGaN~l--~ma~~~~~v~y~--iyr~~~ 129 (322)
T PRK07331 73 LIAILLGPWAACLAVTVALAIQAL--LFGDGGILAFGANCF--NMAFIMPFVGYY--IYKFIK 129 (322)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH--HHhCchHHHHHHHHH--HHHHHHHHHHHH--HHHHHH
Confidence 445666656655555555555442 233344444444444 444544555553 565554
No 103
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=23.91 E-value=1.3e+02 Score=24.54 Aligned_cols=24 Identities=29% Similarity=0.761 Sum_probs=11.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhH
Q 021617 81 DLKKKEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 81 ~l~~k~~EL~~kE~EL~rRE~eL~ 104 (310)
+..++.+.+..++++|+.++.+|+
T Consensus 22 e~~~~~~~~~~~e~~L~~~e~~l~ 45 (126)
T PF13863_consen 22 EIERREEQLKQREEELEKKEQELE 45 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555544444443
No 104
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=23.83 E-value=1.7e+02 Score=24.54 Aligned_cols=49 Identities=12% Similarity=-0.010 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 021617 151 TYLGLFLCLLWNIVAVTTAWI-KGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRAFR 206 (310)
Q Consensus 151 ~wl~~~~~L~~N~i~~l~~~i-~g~~~~~f~Laily~ilg~P~sf~~WYrplY~A~r 206 (310)
.|+.+.+.-+..+++.+..-. .+.. .+.-. +..+.+.-+||.+| .+|+|
T Consensus 3 ~wl~L~~Ai~~Ev~~t~~LK~s~g~~--~~~~~-~~~i~~~~~sf~~l----s~al~ 52 (120)
T PRK10452 3 YWILLALAIATEITGTLSMKWASVSE--GNGGF-ILMLVMISLSYIFL----SFAVK 52 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccCC--CcHHH-HHHHHHHHHHHHHH----HHHHh
Confidence 477677777888887754432 2221 11111 22345555666665 44555
No 105
>COG1422 Predicted membrane protein [Function unknown]
Probab=23.74 E-value=4.4e+02 Score=24.30 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=7.5
Q ss_pred HHHHHhHHHHHHHHHHH
Q 021617 80 ADLKKKEKELQAKEAEL 96 (310)
Q Consensus 80 ~~l~~k~~EL~~kE~EL 96 (310)
++++++.+|++++-+|.
T Consensus 75 ~~~qk~m~efq~e~~eA 91 (201)
T COG1422 75 KELQKMMKEFQKEFREA 91 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444544443333
No 106
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=23.57 E-value=1.2e+02 Score=23.08 Aligned_cols=15 Identities=27% Similarity=0.767 Sum_probs=7.7
Q ss_pred ccccccchHHHHHHH
Q 021617 131 HDIANEIPIHLQRLQ 145 (310)
Q Consensus 131 hDI~~EIP~~~q~~v 145 (310)
||+++|.|...+++.
T Consensus 26 HDLaEdLP~~w~~i~ 40 (66)
T PF05082_consen 26 HDLAEDLPTNWEEIP 40 (66)
T ss_dssp HHHHHCTTTTGGGHH
T ss_pred HHHHHccchhHHHHH
Confidence 555555555554433
No 107
>PLN02189 cellulose synthase
Probab=23.55 E-value=1.2e+03 Score=26.92 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021617 141 LQRLQYVAFATYLGLFLCLLWNIVAVTTAWIKG 173 (310)
Q Consensus 141 ~q~~v~~~y~~wl~~~~~L~~N~i~~l~~~i~g 173 (310)
.||+.++.+.+|-+.++-+++=+++-+++++.|
T Consensus 809 ~QRL~Yl~~~ly~~~sip~liY~~lP~l~Ll~g 841 (1040)
T PLN02189 809 LERFAYVNTTIYPFTSLPLLAYCTLPAICLLTG 841 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467777777676655555555455444555555
No 108
>PRK14208 camphor resistance protein CrcB; Provisional
Probab=23.51 E-value=4.4e+02 Score=22.08 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=26.0
Q ss_pred ccccchhhHHHhh--------cCC-chhhHHHHHHHHHHHHHHHHHHHHHH
Q 021617 241 KSLTGVLPAVDVM--------GDH-ALVGIFYFIGFGLFCLESLVSIWVIQ 282 (310)
Q Consensus 241 ~g~~G~i~ai~~~--------~~~-~~vgi~~~I~a~lf~~~~~~~~~~l~ 282 (310)
.|+||=.++.+.+ +++ ...++.+++..+.-++.++...+.+-
T Consensus 71 tGflGgfTTFSTf~~e~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l~ 121 (126)
T PRK14208 71 AGVMGGFTTYSSFNYETLALLEQGRLAAAAAYLLATVLGCLAAAFAATLLV 121 (126)
T ss_pred HHHhcchhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666665554 333 34578888888887777766654443
No 109
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=23.12 E-value=1.4e+02 Score=25.35 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=10.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHH
Q 021617 83 KKKEKELQAKEAELRRREQDVRR 105 (310)
Q Consensus 83 ~~k~~EL~~kE~EL~rRE~eL~~ 105 (310)
.+|+++++.+.++|+++..+|+.
T Consensus 104 ~~Ke~~~~~~l~~L~~~i~~L~~ 126 (134)
T PF07047_consen 104 AKKEEELQERLEELEERIEELEE 126 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554444443
No 110
>PRK14218 camphor resistance protein CrcB; Provisional
Probab=22.69 E-value=4.8e+02 Score=22.16 Aligned_cols=41 Identities=20% Similarity=0.062 Sum_probs=25.6
Q ss_pred ccccchhhHHHhhc--------CC-chhhHHHHHHHHHHHHHHHHHHHHH
Q 021617 241 KSLTGVLPAVDVMG--------DH-ALVGIFYFIGFGLFCLESLVSIWVI 281 (310)
Q Consensus 241 ~g~~G~i~ai~~~~--------~~-~~vgi~~~I~a~lf~~~~~~~~~~l 281 (310)
.|+||=.++.+.|. ++ ...++.+++.....++.++...+.+
T Consensus 77 tGflGgfTTFSTf~~E~~~L~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l 126 (133)
T PRK14218 77 VGLIGGLTTFSSLMMECLVFVRSDRSLMVGIYLCITLLFGLLFVFLGARL 126 (133)
T ss_pred HHHhchhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777666653 33 3346678877777777666655433
No 111
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=22.43 E-value=92 Score=25.84 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=5.5
Q ss_pred hHHHHHhHHHHH
Q 021617 79 AADLKKKEKELQ 90 (310)
Q Consensus 79 ~~~l~~k~~EL~ 90 (310)
..++.++.+|..
T Consensus 78 m~e~~q~~ee~K 89 (105)
T PF11214_consen 78 MVELKQKQEEEK 89 (105)
T ss_pred HHHHHHHHHHHH
Confidence 345555544433
No 112
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.04 E-value=2e+02 Score=26.76 Aligned_cols=19 Identities=26% Similarity=0.121 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021617 146 YVAFATYLGLFLCLLWNIV 164 (310)
Q Consensus 146 ~~~y~~wl~~~~~L~~N~i 164 (310)
++++++.+.+++|+.++..
T Consensus 177 rv~~fSi~Sl~v~~~va~~ 195 (210)
T KOG1691|consen 177 RVAWFSILSLVVLLSVAGW 195 (210)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777766666555443
No 113
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=21.93 E-value=2e+02 Score=26.58 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021617 259 VGIFYFIGFGLFCLESLVSIWVIQQVYMYFRG 290 (310)
Q Consensus 259 vgi~~~I~a~lf~~~~~~~~~~l~~V~~~yR~ 290 (310)
+..+..++.++..+..++.++.+++..+++|.
T Consensus 47 ~~~~~~i~~~~~~i~~~~~~~~~~~~~k~~~~ 78 (248)
T PF11368_consen 47 IPWISFIALLIIIILFLLTFYFIYKSRKYKKL 78 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777777777777777664
No 114
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=21.90 E-value=2.1e+02 Score=24.16 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHcCCC
Q 021617 278 IWVIQQVYMYFRGSG 292 (310)
Q Consensus 278 ~~~l~~V~~~yR~~G 292 (310)
+-.+.++|+|+|+..
T Consensus 72 ls~lsW~~~y~rg~~ 86 (118)
T PF01277_consen 72 LSSLSWMYNYFRGRH 86 (118)
T ss_pred HHHHHHHHHHhccCC
Confidence 334567789999865
No 115
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=21.87 E-value=53 Score=31.64 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=19.5
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHhhH
Q 021617 78 TAADLKKKEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 78 ~~~~l~~k~~EL~~kE~EL~rRE~eL~ 104 (310)
.++|+++-|+||+.+|.|+++.|+.+.
T Consensus 159 ~~eE~eEVe~el~~~~~~~~~~~~~~~ 185 (294)
T KOG2881|consen 159 GQEELEEVEAELAKREDELDRLEEGLP 185 (294)
T ss_pred chhhHHHHHHHHHhccchhhhhhhcCC
Confidence 367788888888888888877665543
No 116
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.71 E-value=2e+02 Score=23.42 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 021617 88 ELQAKEAELR 97 (310)
Q Consensus 88 EL~~kE~EL~ 97 (310)
+|+++.++|+
T Consensus 45 ~l~~~n~~L~ 54 (105)
T PRK00888 45 KLKARNDQLF 54 (105)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 117
>PF04133 Vps55: Vacuolar protein sorting 55 ; InterPro: IPR007262 Vps55 is involved in the secretion of the Golgi form of the soluble vacuolar carboxypeptidase Y, but not the trafficking of the membrane-bound vacuolar alkaline phosphatase. Both Vps55 and obesity receptor gene-related protein are important for functioning membrane trafficking to the vacuole/lysosome of eukaryotic cells [].
Probab=21.67 E-value=3.1e+02 Score=23.03 Aligned_cols=75 Identities=24% Similarity=0.401 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhhhhhhhhhhhhhhhh--hhcCc--chhHHHHHHHHHHHHHHHhh
Q 021617 154 GLFLCLLWNIVAVTTAWIKGEGVKIWFLAIIYFIAGVPGAYVLWYRPLYRA--FRTES--AMKFGWFFLFYLLHIGFCIF 229 (310)
Q Consensus 154 ~~~~~L~~N~i~~l~~~i~g~~~~~f~Laily~ilg~P~sf~~WYrplY~A--~r~ds--s~~f~~fF~~~~~~i~f~v~ 229 (310)
+.++.+.+.+++|.+ .+.---++..+.|.+.=+|... -|..... +.+|+ -..+..|+- ++.+.
T Consensus 7 ~~aiG~lL~IL~CAL----~~nw~PL~v~~~y~laPiP~~i---~~~~~~~~~~~~~~~~~~d~~~FlT------~~~vv 73 (120)
T PF04133_consen 7 FLAIGFLLVILSCAL----YKNWWPLFVVLFYVLAPIPNLI---ARRYSSDDDFSSDSGSCQDFGKFLT------GFLVV 73 (120)
T ss_pred HHHHHHHHHHHHHHH----hcccHHHHHHHHHHHHhhhHHH---HCCCCCCcccccCcchHHHHHHHHH------HHHHH
Confidence 355677888888844 1222235666777766666554 2221111 11111 123444433 46677
Q ss_pred hhccCcccccCc
Q 021617 230 ASVAPPIIFKGK 241 (310)
Q Consensus 230 ~aIG~P~~f~g~ 241 (310)
..+|+|.++...
T Consensus 74 Sg~aLP~VL~H~ 85 (120)
T PF04133_consen 74 SGFALPIVLAHA 85 (120)
T ss_pred HHHHHHHHHHhh
Confidence 788888775443
No 118
>COG3671 Predicted membrane protein [Function unknown]
Probab=21.63 E-value=3.1e+02 Score=23.40 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021617 140 HLQRLQYVAFATYLGLFLCLLWNIVAVTTAWIK 172 (310)
Q Consensus 140 ~~q~~v~~~y~~wl~~~~~L~~N~i~~l~~~i~ 172 (310)
+-+++.-..|.++++-.++.+.=+++.+++.+.
T Consensus 19 ~~k~l~~vvY~Ly~~G~v~git~lvgvi~AYv~ 51 (125)
T COG3671 19 SGKKLPIVVYILYLLGAVTGITPLVGVIFAYVN 51 (125)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 556777889999998888888888888877763
No 119
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=21.56 E-value=1.3e+02 Score=25.55 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=11.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHh
Q 021617 81 DLKKKEKELQAKEAELRRREQD 102 (310)
Q Consensus 81 ~l~~k~~EL~~kE~EL~rRE~e 102 (310)
+++.+-+.|++||++|+-+=++
T Consensus 76 ~~~~~L~~Le~r~e~Lk~~~~~ 97 (120)
T PF04521_consen 76 DLNLELEKLERREEQLKTQIQV 97 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666544433
No 120
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=21.46 E-value=1.6e+02 Score=27.30 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=20.5
Q ss_pred cchHHHHHhHHHHHHHHHHHHHHHHhhH
Q 021617 77 DTAADLKKKEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 77 ~~~~~l~~k~~EL~~kE~EL~rRE~eL~ 104 (310)
.+.++|.+|||||.|...+|.+.-++|.
T Consensus 14 ~Ar~~LL~~EKeltR~~dalaa~RR~LP 41 (211)
T PF05988_consen 14 AARDALLAREKELTRARDALAAERRRLP 41 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3456888888888888888876655554
No 121
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=21.40 E-value=1.6e+02 Score=30.09 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=4.0
Q ss_pred HHHhhHHHH
Q 021617 99 REQDVRRKE 107 (310)
Q Consensus 99 RE~eL~~re 107 (310)
|++||.+|+
T Consensus 215 r~~ela~r~ 223 (499)
T COG4372 215 RTEELARRA 223 (499)
T ss_pred HHHHHHHHH
Confidence 444444444
No 122
>PF14851 FAM176: FAM176 family
Probab=21.34 E-value=1.4e+02 Score=26.27 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=32.4
Q ss_pred cchhhHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021617 244 TGVLPAVDVMGDHALVGIFYFIGFGLFCLESLVSIWVIQQVY 285 (310)
Q Consensus 244 ~G~i~ai~~~~~~~~vgi~~~I~a~lf~~~~~~~~~~l~~V~ 285 (310)
+.+|.|...+.+|.--..+|++..++++|...+++++++--.
T Consensus 6 SnsLaaya~I~~~PE~~aLYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 6 SNSLAAYAHIRDNPERFALYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 467778777888866667888888888888888888776443
No 123
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.27 E-value=1.8e+02 Score=27.97 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=11.9
Q ss_pred HhHHHHHHHHHHHHHHHHhhH
Q 021617 84 KKEKELQAKEAELRRREQDVR 104 (310)
Q Consensus 84 ~k~~EL~~kE~EL~rRE~eL~ 104 (310)
.+.+||+..++||+++|++++
T Consensus 204 ~~~~ELe~~~EeL~~~Eke~~ 224 (269)
T PF05278_consen 204 LKKEELEELEEELKQKEKEVK 224 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555555666666666554
No 124
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=21.12 E-value=8.6e+02 Score=24.50 Aligned_cols=29 Identities=14% Similarity=0.465 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021617 143 RLQYVAFATYLGLFLCLLWNIVAVTTAWI 171 (310)
Q Consensus 143 ~~v~~~y~~wl~~~~~L~~N~i~~l~~~i 171 (310)
+..|+++..|+...+++++=++-....|+
T Consensus 14 ~~~k~~~k~~i~~~i~~~l~~i~~~~~~~ 42 (459)
T PF10337_consen 14 RSLKIMFKCWIAPWIALILCQIPPVARWL 42 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHh
Confidence 35677777777666666665554444444
No 125
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=21.09 E-value=38 Score=27.83 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Q 021617 264 FIGFGLFCLESLVSIWVIQQVYMYFRGSGKA 294 (310)
Q Consensus 264 ~I~a~lf~~~~~~~~~~l~~V~~~yR~~G~s 294 (310)
=|-+.||++++.+..-++--+..|||+..+.
T Consensus 65 EiESLLFaLQAAiGAgiIgY~lG~~~gr~~~ 95 (100)
T PRK02898 65 EIESLLFALQAALGAGIIGYILGYYKGRSKR 95 (100)
T ss_pred hHHHHHHHHHHHHhhhhhheeeeehhhhhhh
Confidence 4778999999999999999888999876443
No 126
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=20.96 E-value=1.2e+02 Score=23.91 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC
Q 021617 268 GLFCLESLVSIWVIQQVYMYFRGSG 292 (310)
Q Consensus 268 ~lf~~~~~~~~~~l~~V~~~yR~~G 292 (310)
+...+..++.+++|..||..||...
T Consensus 10 ialiv~~iiaIvvW~iv~ieYrk~~ 34 (81)
T PF00558_consen 10 IALIVALIIAIVVWTIVYIEYRKIK 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445567777888899998653
No 127
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=20.95 E-value=5.5e+02 Score=22.22 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.9
Q ss_pred cchhhHHHhhcCCch
Q 021617 244 TGVLPAVDVMGDHAL 258 (310)
Q Consensus 244 ~G~i~ai~~~~~~~~ 258 (310)
.|++.-.+.+.++.+
T Consensus 78 VGim~~~~ll~~~~~ 92 (141)
T PRK04125 78 ISVINSLGVMSQYPV 92 (141)
T ss_pred hHHHHhHHHHHHHHH
Confidence 689988888887654
No 128
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=20.86 E-value=9.4e+02 Score=24.87 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=12.0
Q ss_pred HHcCCChH-HHHHHHHHhhH
Q 021617 287 YFRGSGKA-AEMKREAARGA 305 (310)
Q Consensus 287 ~yR~~G~s-~~a~~e~a~~~ 305 (310)
+|+-+.+. ++.++|..++-
T Consensus 435 ~y~L~~~~~~~I~~eL~~r~ 454 (467)
T COG2211 435 FYKLNEKMHKEIIEELEQRK 454 (467)
T ss_pred hccCCHHHHHHHHHHHHHHh
Confidence 77777665 55677766543
No 129
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=20.86 E-value=94 Score=20.75 Aligned_cols=13 Identities=54% Similarity=0.549 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHH
Q 021617 85 KEKELQAKEAELR 97 (310)
Q Consensus 85 k~~EL~~kE~EL~ 97 (310)
.++||+.||.||+
T Consensus 19 v~~~LE~Kek~L~ 31 (35)
T PF08182_consen 19 VCKELEQKEKELS 31 (35)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555544
No 130
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=20.78 E-value=1.7e+02 Score=29.83 Aligned_cols=15 Identities=40% Similarity=0.501 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHhh
Q 021617 89 LQAKEAELRRREQDV 103 (310)
Q Consensus 89 L~~kE~EL~rRE~eL 103 (310)
.+.+++||.+|++.+
T Consensus 212 ~q~r~~ela~r~aa~ 226 (499)
T COG4372 212 AQARTEELARRAAAA 226 (499)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 131
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=20.77 E-value=88 Score=29.80 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=22.9
Q ss_pred hhhHHHhhc-CCchhhHHHHHHHHHHHHHHHHHH
Q 021617 246 VLPAVDVMG-DHALVGIFYFIGFGLFCLESLVSI 278 (310)
Q Consensus 246 ~i~ai~~~~-~~~~vgi~~~I~a~lf~~~~~~~~ 278 (310)
+|+..+.++ +|...||+++++.++..+.+++.+
T Consensus 231 vlst~s~~Ggkn~~Lgi~ylvvg~i~~v~~i~~~ 264 (278)
T PF03381_consen 231 VLSTTSWFGGKNYFLGIAYLVVGGICLVLAIIFL 264 (278)
T ss_pred EEEeccccCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 556666675 678889998888877765555443
No 132
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=20.61 E-value=2.5e+02 Score=27.58 Aligned_cols=9 Identities=11% Similarity=0.649 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 021617 278 IWVIQQVYM 286 (310)
Q Consensus 278 ~~~l~~V~~ 286 (310)
.|+++++++
T Consensus 59 ~~l~~~~~~ 67 (409)
T TIGR00540 59 EWGLRRFFR 67 (409)
T ss_pred HHHHHHHHH
Confidence 344444443
No 133
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=20.56 E-value=1.1e+02 Score=30.44 Aligned_cols=24 Identities=46% Similarity=0.610 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Q 021617 86 EKELQAKEAELRRREQDVRRKEEA 109 (310)
Q Consensus 86 ~~EL~~kE~EL~rRE~eL~~re~~ 109 (310)
++||.+-|+|+..+|+|++...++
T Consensus 345 eEEL~~fE~e~A~ke~El~~ka~~ 368 (442)
T KOG3866|consen 345 EEELQQFEREYAQKEQELQHKAEA 368 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHH
Confidence 456666666666666666544433
No 134
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=20.55 E-value=2.9e+02 Score=23.85 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHhhhhhhhhh
Q 021617 177 KIWFLAIIYFIAGVPGAYVL 196 (310)
Q Consensus 177 ~~f~Laily~ilg~P~sf~~ 196 (310)
..|+++.-.+|+|+|+++-+
T Consensus 93 a~Wi~tTSallLgvPl~l~i 112 (137)
T PF04281_consen 93 ALWIVTTSALLLGVPLALEI 112 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46888888889999998754
No 135
>COG5523 Predicted integral membrane protein [Function unknown]
Probab=20.38 E-value=7.8e+02 Score=23.72 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhhhccCcccccCccccchhh-HHHhhcCCchhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 021617 213 FGWFFLFYLLHIGFCIFASVAPPIIFKGKSLTGVLP-AVDVMGDHALVGIFYFIG--FGLFCLESLVSIWVIQQVYMYF 288 (310)
Q Consensus 213 f~~fF~~~~~~i~f~v~~aIG~P~~f~g~g~~G~i~-ai~~~~~~~~vgi~~~I~--a~lf~~~~~~~~~~l~~V~~~y 288 (310)
+..+.+...+.+.+++++.+++=+.+-+ ++.+.+. .++..+.. ..-.+|+.+ .++|.+........-.+.|..|
T Consensus 91 lvl~lli~iF~flWSli~~~pi~i~~ys-~s~~~~~~~~s~~d~~-i~~~lm~~gl~~ig~~i~ii~~~i~~~~~y~ay 167 (271)
T COG5523 91 LVLYLLIKIFRFLWSLIAFVPIFIIFYS-GSASKIILNLSASDVV-IEVALMLFGLRLIGLLILIILGYIASLAYYMAY 167 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhh-hhhHHHhhcccccchh-hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778888888888876543333 3334333 23322222 222344444 4444444444444444555554
No 136
>PRK14212 camphor resistance protein CrcB; Provisional
Probab=20.31 E-value=5.2e+02 Score=21.68 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=25.8
Q ss_pred ccccchhhHHHhh--------cCCc-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 021617 241 KSLTGVLPAVDVM--------GDHA-LVGIFYFIGFGLFCLESLVSIWVIQ 282 (310)
Q Consensus 241 ~g~~G~i~ai~~~--------~~~~-~vgi~~~I~a~lf~~~~~~~~~~l~ 282 (310)
.|+||=.++.+.+ +++. ..++.++.....-++.++...+.+-
T Consensus 71 tGflGgfTTFSTf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~a~~lG~~l~ 121 (128)
T PRK14212 71 AGFLGAFTTFSTFSYETLDCFKAGDYFNGFSNILANVLLGLLMVFIGAYLG 121 (128)
T ss_pred hhHhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666766665554 3333 4577788877777776666554433
No 137
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.24 E-value=1.2e+03 Score=27.72 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHhhhhhhhh
Q 021617 177 KIWFLAIIYFIAGVPGAYV 195 (310)
Q Consensus 177 ~~f~Laily~ilg~P~sf~ 195 (310)
+.+.-.++--++-.|.+|+
T Consensus 891 ~~Lh~~ml~~Ilrapm~FF 909 (1381)
T KOG0054|consen 891 RKLHDKLLNSILRAPMSFF 909 (1381)
T ss_pred HHHHHHHHHHHHhCcchhc
Confidence 3455566777788888876
No 138
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.22 E-value=2.2e+02 Score=32.41 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=17.6
Q ss_pred ccchHHHHHhHHHHHHHHHHHHHHHHhhHHHH
Q 021617 76 LDTAADLKKKEKELQAKEAELRRREQDVRRKE 107 (310)
Q Consensus 76 ~~~~~~l~~k~~EL~~kE~EL~rRE~eL~~re 107 (310)
+..-+++...+.||+..+.||+..|++|+..+
T Consensus 673 L~~l~~l~~~~~~~~~~q~el~~le~eL~~le 704 (1174)
T KOG0933|consen 673 LRQLQKLKQAQKELRAIQKELEALERELKSLE 704 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666666666666665555433
Done!