BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021619
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HV4|A Chain A, 2.25 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylmuramate--L- Alanine Ligase (Murc) From
Yersinia Pestis Co92 In Complex With Amp
pdb|4HV4|B Chain B, 2.25 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylmuramate--L- Alanine Ligase (Murc) From
Yersinia Pestis Co92 In Complex With Amp
Length = 494
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 208 EIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRR---VYDLRGSVKCTNIS-EGPP 263
E++ +EG++IS L PNS H T FH R V D V T IS + P
Sbjct: 40 EVLANEGYQISGSDLAPNSVTQH--LTALGAQIYFHHRPENVLDASVVVVSTAISADNPE 97
Query: 264 CTGFVEGMAPVFSRSAWYC 282
E PV R+
Sbjct: 98 IVAAREARIPVIRRAEMLA 116
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 179 HPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA-LDPNSTEI 229
+P++ D+I+L +DLG+ + R Y ++++EGF S D N+ I
Sbjct: 128 YPEIRDAADHIYL-SQDLGMRKPEARIYQHVLQAEGFSPSDTVFFDDNADNI 178
>pdb|3QK6|A Chain A, Crystal Structure Of Escherichia Coli Phnd
pdb|3QK6|B Chain B, Crystal Structure Of Escherichia Coli Phnd
pdb|3QUJ|A Chain A, Crystal Structure Of The Phosphonate Binding Protein,
Phnd, From Escherichia Coli
pdb|3QUJ|B Chain B, Crystal Structure Of The Phosphonate Binding Protein,
Phnd, From Escherichia Coli
pdb|3QUJ|C Chain C, Crystal Structure Of The Phosphonate Binding Protein,
Phnd, From Escherichia Coli
pdb|3QUJ|D Chain D, Crystal Structure Of The Phosphonate Binding Protein,
Phnd, From Escherichia Coli
Length = 321
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 71 SSGRLKSLPRGIVQARSDLELRPLWS--TSSSRKKFGVYSNRNLLAIPAGIKQKDNVDAI 128
S + K+L GI+ S L+P W+ KK GV N AGI Q
Sbjct: 9 SEEQEKALNFGIISTESQQNLKPQWTPFLQDXEKKLGVKVNAFFAPDYAGIIQG------ 62
Query: 129 VRKFLPENFTVILFHYDGDVNAWRGLDWSNKAI---HIAAQNQTKWWFAKRFLHPDVVSN 185
F + + G+++A +D +N + +AA +W ++N
Sbjct: 63 ------XRFNKVDIAWYGNLSAXEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINN 116
Query: 186 YDYIFLWDEDLGVENFDPR 204
+ + +DL N DP
Sbjct: 117 LNDLLAKRKDLTFGNGDPN 135
>pdb|3P7I|A Chain A, Crystal Structure Of Escherichia Coli Phnd In Complex With
2- Aminoethyl Phosphonate
Length = 321
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 71 SSGRLKSLPRGIVQARSDLELRPLWS--TSSSRKKFGVYSNRNLLAIPAGIKQKDNVDAI 128
S + K+L GI+ S L+P W+ KK GV N AGI Q
Sbjct: 9 SEEQEKALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQG------ 62
Query: 129 VRKFLPENFTVILFHYDGDVNAWRGLDWSNKAI---HIAAQNQTKWWFAKRFLHPDVVSN 185
F + + G+++A +D +N + +AA +W ++N
Sbjct: 63 ------MRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINN 116
Query: 186 YDYIFLWDEDLGVENFDPR 204
+ + +DL N DP
Sbjct: 117 LNDLLAKRKDLTFGNGDPN 135
>pdb|3S4U|A Chain A, Crystal Structure Of Open, Unliganded E. Coli Phnd H157a
Length = 321
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 71 SSGRLKSLPRGIVQARSDLELRPLWS--TSSSRKKFGVYSNRNLLAIPAGIKQKDNVDAI 128
S + K+L GI+ S L+P W+ KK GV N AGI Q
Sbjct: 9 SEEQEKALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQG------ 62
Query: 129 VRKFLPENFTVILFHYDGDVNAWRGLDWSNKAI---HIAAQNQTKWWFAKRFLHPDVVSN 185
F + + G+++A +D +N + +AA +W ++N
Sbjct: 63 ------MRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINN 116
Query: 186 YDYIFLWDEDLGVENFDPR 204
+ + +DL N DP
Sbjct: 117 LNDLLAKRKDLTFGNGDPN 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,671,934
Number of Sequences: 62578
Number of extensions: 401042
Number of successful extensions: 690
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 5
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)