Query 021619
Match_columns 310
No_of_seqs 117 out of 138
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 04:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 6E-113 1E-117 799.8 17.7 231 67-304 2-237 (294)
2 cd04185 GT_2_like_b Subfamily 49.5 14 0.00031 30.8 2.5 39 184-222 78-116 (202)
3 PF12621 DUF3779: Phosphate me 48.4 16 0.00034 29.7 2.4 52 175-231 34-87 (95)
4 TIGR01556 rhamnosyltran L-rham 44.4 18 0.00039 32.4 2.5 42 184-225 72-116 (281)
5 PF12996 DUF3880: DUF based on 43.1 11 0.00024 29.1 0.8 26 180-215 13-38 (79)
6 cd04186 GT_2_like_c Subfamily 43.0 25 0.00055 27.4 2.8 36 185-220 74-110 (166)
7 cd06434 GT2_HAS Hyaluronan syn 42.6 15 0.00033 31.1 1.7 40 184-223 76-115 (235)
8 PF00535 Glycos_transf_2: Glyc 41.5 24 0.00051 27.2 2.4 35 184-218 77-111 (169)
9 PF01762 Galactosyl_T: Galacto 41.1 29 0.00062 30.2 3.1 158 91-287 6-167 (195)
10 cd06421 CESA_CelA_like CESA_Ce 35.8 32 0.00069 29.0 2.5 38 184-221 83-121 (234)
11 cd02525 Succinoglycan_BP_ExoA 33.1 35 0.00077 28.9 2.4 38 184-221 80-117 (249)
12 PF13641 Glyco_tranf_2_3: Glyc 32.5 22 0.00047 30.2 1.0 39 184-222 85-123 (228)
13 cd02510 pp-GalNAc-T pp-GalNAc- 31.2 47 0.001 30.3 3.0 41 184-224 82-122 (299)
14 PF10551 MULE: MULE transposas 30.8 21 0.00046 26.9 0.6 25 265-289 66-91 (93)
15 cd06435 CESA_NdvC_like NdvC_li 29.8 33 0.00071 29.4 1.6 37 185-221 84-120 (236)
16 PF07976 Phe_hydrox_dim: Pheno 26.3 1.5E+02 0.0031 26.1 5.1 73 75-157 33-124 (169)
17 cd02520 Glucosylceramide_synth 26.0 57 0.0012 27.6 2.4 27 184-210 85-111 (196)
18 cd06437 CESA_CaSu_A2 Cellulose 25.7 42 0.00091 28.9 1.6 37 184-220 86-122 (232)
19 PF11057 Cortexin: Cortexin of 25.6 81 0.0017 25.9 3.1 24 27-50 30-53 (81)
20 cd04195 GT2_AmsE_like GT2_AmsE 25.3 65 0.0014 26.6 2.6 38 184-221 79-117 (201)
21 COG1216 Predicted glycosyltran 25.3 83 0.0018 29.2 3.6 39 186-224 85-123 (305)
22 PF13778 DUF4174: Domain of un 24.0 51 0.0011 27.4 1.8 37 123-159 64-102 (118)
23 PF06679 DUF1180: Protein of u 23.9 1.3E+02 0.0029 27.2 4.5 26 24-49 95-120 (163)
24 cd00761 Glyco_tranf_GTA_type G 21.6 84 0.0018 23.3 2.4 37 185-221 77-114 (156)
25 cd02515 Glyco_transf_6 Glycosy 21.5 3.2E+02 0.0069 26.9 6.7 96 108-207 34-146 (271)
26 PF00872 Transposase_mut: Tran 20.5 38 0.00082 33.3 0.4 30 264-293 236-266 (381)
27 PF03314 DUF273: Protein of un 20.3 61 0.0013 31.0 1.6 36 172-207 27-65 (222)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=6.5e-113 Score=799.81 Aligned_cols=231 Identities=58% Similarity=1.059 Sum_probs=223.3
Q ss_pred ccccCCCCcCCCCCCceecCCCcceecCCCCCCCCcccCCCCCccEEEEeecCCccccHhHHHhhhCCCCeEEEEEEEcC
Q 021619 67 GSRFSSGRLKSLPRGIVQARSDLELRPLWSTSSSRKKFGVYSNRNLLAIPAGIKQKDNVDAIVRKFLPENFTVILFHYDG 146 (310)
Q Consensus 67 ~~~~~p~g~e~LP~GIV~~~Sdl~lr~Lwg~p~~~~~~~~~~~k~Lla~~VG~kqk~~Vd~~VkKF~~~nF~vmLFHYDG 146 (310)
+.+++|+|+|+||+|||+++||||||||||+|+++.. .++|||||||||+|||++||++|+|| ++|||||||||||
T Consensus 2 ~~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~~---~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg 77 (294)
T PF05212_consen 2 WVPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDLP---KKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDG 77 (294)
T ss_pred CcCCCCCccccCCCCccccCCCceeeecCCCcccccc---CCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecC
Confidence 5689999999999999999999999999999998873 58899999999999999999999999 8999999999999
Q ss_pred CCCcccccccCCceEEEEEeccccccccccccCcccccccceEEeeccccccCCCChHHHHHHHHHcCCccccCCCCCCC
Q 021619 147 DVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNS 226 (310)
Q Consensus 147 ~vd~W~d~eWs~~aIHVsa~kQtKWwfaKRFLHPDiVa~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gLeISQPALd~~s 226 (310)
+||+|+|||||++||||+++|||||||||||||||||++|||||||||||+||||+|+|||+||++|||||||||||+++
T Consensus 78 ~vd~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~ 157 (294)
T PF05212_consen 78 RVDEWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDS 157 (294)
T ss_pred CcCchhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeeeeecCcceeeeeecccCCcccCCCCCCCCccceEEEeccccccchhhHHHHhhhccccc-----cccCcccC
Q 021619 227 TEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQVIIYL-----CPYPRCHG 301 (310)
Q Consensus 227 ~~ihh~iT~R~~~s~vHr~~~~~~g~~~C~~~~~~PPCtgFVEvMAPVFSR~AWrCvWhmIQNDLvh-----~~~~rcv~ 301 (310)
+++||+||+|+++++||| +.++.+.|.+++++||||||||||||||||+||||||||||||||| |++++|++
T Consensus 158 ~~~~~~iT~R~~~~~vhr---~~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~ 234 (294)
T PF05212_consen 158 SEIHHPITKRRPDSEVHR---KTRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAG 234 (294)
T ss_pred ceeeeeEEeecCCceeEe---ccCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhc
Confidence 899999999999999999 5677888889999999999999999999999999999999999999 99999997
Q ss_pred Ccc
Q 021619 302 PEQ 304 (310)
Q Consensus 302 ~~~ 304 (310)
++.
T Consensus 235 ~~~ 237 (294)
T PF05212_consen 235 DRH 237 (294)
T ss_pred ccc
Confidence 654
No 2
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=49.51 E-value=14 Score=30.75 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=31.3
Q ss_pred cccceEEeeccccccCCCChHHHHHHHHHcCCccccCCC
Q 021619 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPAL 222 (310)
Q Consensus 184 a~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gLeISQPAL 222 (310)
+.+||+++.|+|..++.--.+++++.+++.+..+..|..
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 116 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLV 116 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEeccee
Confidence 579999999999999877778888887766666666654
No 3
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=48.35 E-value=16 Score=29.68 Aligned_cols=52 Identities=25% Similarity=0.440 Sum_probs=40.0
Q ss_pred ccccCcccccccceEEeeccccccCCCChHHHHHHHHHcCCccccCC--CCCCCCceee
Q 021619 175 KRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA--LDPNSTEIHH 231 (310)
Q Consensus 175 KRFLHPDiVa~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gLeISQPA--Ld~~s~~ihh 231 (310)
.-|+||.+-++--.|||+-|++||-. +=++-.++.|+.||.-+ ||.+ |.+.|
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~----~ei~~~~~~~v~~Sd~gA~ldek-gkv~~ 87 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSR----QEIEETRKVGVPISDEGATLDEK-GKVVW 87 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCH----HHHHHhhcCCeEEECCCeEEccC-CCEEE
Confidence 56999999999999999999999954 44566778888888755 4552 34443
No 4
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=44.37 E-value=18 Score=32.44 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=32.4
Q ss_pred cccceEEeeccccccCCCChHHHHHHHHHc--CCccccCCC-CCC
Q 021619 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSE--GFEISQPAL-DPN 225 (310)
Q Consensus 184 a~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~--gLeISQPAL-d~~ 225 (310)
..+|||++.|+|..++.-..++.++.+.+. +.-+..|.. |.+
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 116 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRG 116 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCC
Confidence 379999999999999877778888887765 566677763 443
No 5
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=43.14 E-value=11 Score=29.14 Aligned_cols=26 Identities=31% Similarity=0.685 Sum_probs=19.8
Q ss_pred cccccccceEEeeccccccCCCChHHHHHHHHHcCC
Q 021619 180 PDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGF 215 (310)
Q Consensus 180 PDiVa~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gL 215 (310)
..+...|||||++|.+ .++-.|+.|.
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G~ 38 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLGA 38 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcCC
Confidence 4678899999999975 4566666673
No 6
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.05 E-value=25 Score=27.45 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=25.7
Q ss_pred ccceEEeeccccccCCCChHHHHHHHHHc-CCccccC
Q 021619 185 NYDYIFLWDEDLGVENFDPRRYLEIVKSE-GFEISQP 220 (310)
Q Consensus 185 ~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~-gLeISQP 220 (310)
.+|||++.|+|..++....+++++.+.+. +..+..+
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~ 110 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGP 110 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEc
Confidence 79999999999998877777777754433 3433333
No 7
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=42.60 E-value=15 Score=31.15 Aligned_cols=40 Identities=13% Similarity=-0.029 Sum_probs=32.9
Q ss_pred cccceEEeeccccccCCCChHHHHHHHHHcCCccccCCCC
Q 021619 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALD 223 (310)
Q Consensus 184 a~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gLeISQPALd 223 (310)
+.+|||++.|.|..++.-..++.++.+...+..+.++...
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~ 115 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQR 115 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceE
Confidence 5899999999999999877888888887777777776543
No 8
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=41.49 E-value=24 Score=27.19 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=27.6
Q ss_pred cccceEEeeccccccCCCChHHHHHHHHHcCCccc
Q 021619 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEIS 218 (310)
Q Consensus 184 a~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gLeIS 218 (310)
+..|||++.|+|..++.-..+++++.+++.+-.+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~ 111 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVV 111 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEE
Confidence 56779999999999988899999999999666443
No 9
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=41.08 E-value=29 Score=30.15 Aligned_cols=158 Identities=20% Similarity=0.293 Sum_probs=84.1
Q ss_pred eecCCCCCCCCcccCCCCCccEEEEeecCCc--cccHhHHHhhhCCCCeEEEEEEEcCCCCcccccccCCceEEEEEecc
Q 021619 91 LRPLWSTSSSRKKFGVYSNRNLLAIPAGIKQ--KDNVDAIVRKFLPENFTVILFHYDGDVNAWRGLDWSNKAIHIAAQNQ 168 (310)
Q Consensus 91 lr~Lwg~p~~~~~~~~~~~k~Lla~~VG~kq--k~~Vd~~VkKF~~~nF~vmLFHYDG~vd~W~d~eWs~~aIHVsa~kQ 168 (310)
+|.-||++..-. ..+--+.+-||... ...++..+++-....=||+++=+ +|.+..+.. + ....
T Consensus 6 IR~TW~~~~~~~-----~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt~--K-----~~~~ 70 (195)
T PF01762_consen 6 IRETWGNQRNFK-----GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLTL--K-----TLAG 70 (195)
T ss_pred HHHHHhcccccC-----CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhhH--H-----HHHH
Confidence 467788766433 24456677788887 55577767665333446665433 566655421 1 1112
Q ss_pred ccccccccccCcccccccceEEeeccccccCCCChHHHHHHHHHcCCccccCCCCCCCCceeeeeeeeecCcc--eeeee
Q 021619 169 TKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKK--FHRRV 246 (310)
Q Consensus 169 tKWwfaKRFLHPDiVa~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gLeISQPALd~~s~~ihh~iT~R~~~s~--vHr~~ 246 (310)
.+| ..+.+ .+++||+.-|||.-| +++++++..++.-.+.+.+.+-.. .....-..|++.++ +....
T Consensus 71 ~~w-~~~~c------~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g~--~~~~~~~~r~~~~kw~v~~~~ 138 (195)
T PF01762_consen 71 LKW-ASKHC------PNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYGG--CIKNGPPIRDPSSKWYVSEEE 138 (195)
T ss_pred HHH-HHhhC------CchhheeecCcEEEE---ehHHhhhhhhhcccCccccccccc--cccCCccccccccCceeeeee
Confidence 233 22322 358999999999988 667777777666333333333332 12222234444333 22222
Q ss_pred ecccCCcccCCCCCCCCccceEEEeccccccchhhHHHHhh
Q 021619 247 YDLRGSVKCTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLI 287 (310)
Q Consensus 247 ~~~~g~~~C~~~~~~PPCtgFVEvMAPVFSR~AWrCvWhmI 287 (310)
|... .-|| |..+.+=++|+++-+.+....
T Consensus 139 y~~~---------~yP~---y~~G~~yvls~~~v~~i~~~~ 167 (195)
T PF01762_consen 139 YPDD---------YYPP---YCSGGGYVLSSDVVKRIYKAS 167 (195)
T ss_pred cccc---------cCCC---cCCCCeEEecHHHHHHHHHHh
Confidence 2111 1222 334556678888877766543
No 10
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=35.83 E-value=32 Score=29.04 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=30.7
Q ss_pred cccceEEeeccccccCCCChHHHHHHHHH-cCCccccCC
Q 021619 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKS-EGFEISQPA 221 (310)
Q Consensus 184 a~YdYIFlwDEDL~vd~F~~~rYl~Ivk~-~gLeISQPA 221 (310)
+.+|||.+.|.|..++.-..+++++.+.+ .++.+.++.
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~ 121 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTP 121 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecc
Confidence 47999999999999988778888888876 666666654
No 11
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=33.14 E-value=35 Score=28.86 Aligned_cols=38 Identities=18% Similarity=0.011 Sum_probs=29.5
Q ss_pred cccceEEeeccccccCCCChHHHHHHHHHcCCccccCC
Q 021619 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (310)
Q Consensus 184 a~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gLeISQPA 221 (310)
+.+|||.+.|.|..++.-..++.++..++.+..+.+..
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 117 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGP 117 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecc
Confidence 37999999999998877777888877777676665543
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=32.52 E-value=22 Score=30.17 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=27.7
Q ss_pred cccceEEeeccccccCCCChHHHHHHHHHcCCccccCCC
Q 021619 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPAL 222 (310)
Q Consensus 184 a~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gLeISQPAL 222 (310)
+.+|||++.|+|..++.-..+++++.+...+..+-|+..
T Consensus 85 ~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~ 123 (228)
T PF13641_consen 85 ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPV 123 (228)
T ss_dssp ---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEE
T ss_pred cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeE
Confidence 459999999999999888899999998777777777655
No 13
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=31.21 E-value=47 Score=30.27 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=35.4
Q ss_pred cccceEEeeccccccCCCChHHHHHHHHHcCCccccCCCCC
Q 021619 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDP 224 (310)
Q Consensus 184 a~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gLeISQPALd~ 224 (310)
+..|||.+.|.|..++.--.+++++.+.+..-.+.-|.++.
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~ 122 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDV 122 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeecc
Confidence 67899999999999988889999999988877777777653
No 14
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]. This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].
Probab=30.78 E-value=21 Score=26.93 Aligned_cols=25 Identities=16% Similarity=0.558 Sum_probs=17.4
Q ss_pred cceEEEeccccccch-hhHHHHhhhc
Q 021619 265 TGFVEGMAPVFSRSA-WYCAWHLIQV 289 (310)
Q Consensus 265 tgFVEvMAPVFSR~A-WrCvWhmIQN 289 (310)
.+..+...-||...- -.|.||++||
T Consensus 66 ~~~~~Ai~~vfP~~~~~~C~~H~~~n 91 (93)
T PF10551_consen 66 KALINAIKEVFPDARHQLCLFHILRN 91 (93)
T ss_pred HHHHHHHHHHCCCceEehhHHHHHHh
Confidence 445555566775544 3899999998
No 15
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=29.77 E-value=33 Score=29.37 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=27.7
Q ss_pred ccceEEeeccccccCCCChHHHHHHHHHcCCccccCC
Q 021619 185 NYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (310)
Q Consensus 185 ~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gLeISQPA 221 (310)
.||||.+.|.|..++.-...+.++.+.+.+..+-++.
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAP 120 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecC
Confidence 3999999999988877667777777765566665543
No 16
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=26.28 E-value=1.5e+02 Score=26.14 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=40.0
Q ss_pred cCCCCCCceecCCCcceecCCCCCCCCcccCCCCCccEEEEeecCCccc---cHh----------HHHhhhCC------C
Q 021619 75 LKSLPRGIVQARSDLELRPLWSTSSSRKKFGVYSNRNLLAIPAGIKQKD---NVD----------AIVRKFLP------E 135 (310)
Q Consensus 75 ~e~LP~GIV~~~Sdl~lr~Lwg~p~~~~~~~~~~~k~Lla~~VG~kqk~---~Vd----------~~VkKF~~------~ 135 (310)
-++||+.-|.+-+|-....|-..=..+ .+=.+++++=-+.+.. .+. .++++|.. +
T Consensus 33 G~Rlp~~~v~r~aD~~p~~l~~~l~sd------Grfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s 106 (169)
T PF07976_consen 33 GRRLPSAKVVRHADGNPVHLQDDLPSD------GRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDS 106 (169)
T ss_dssp TCB----EEEETTTTEEEEGGGG--SS------S-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTS
T ss_pred ccccCCceEEEEcCCCChhHhhhcccC------CCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCC
Confidence 358999999999999888885421111 2235677764443322 122 45567754 3
Q ss_pred CeEEEEEEEcCCCCcccccccC
Q 021619 136 NFTVILFHYDGDVNAWRGLDWS 157 (310)
Q Consensus 136 nF~vmLFHYDG~vd~W~d~eWs 157 (310)
-|+++|+| -..++++||.
T Consensus 107 ~~~~~~I~----~~~~~~~e~~ 124 (169)
T PF07976_consen 107 VFDVLLIH----SSPRDEVELF 124 (169)
T ss_dssp SEEEEEEE----SS-CCCS-GG
T ss_pred eeEEEEEe----cCCCCceeHH
Confidence 39999999 3557778774
No 17
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=26.00 E-value=57 Score=27.55 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=20.1
Q ss_pred cccceEEeeccccccCCCChHHHHHHH
Q 021619 184 SNYDYIFLWDEDLGVENFDPRRYLEIV 210 (310)
Q Consensus 184 a~YdYIFlwDEDL~vd~F~~~rYl~Iv 210 (310)
+.+|||++.|.|..++.--.++.++..
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHh
Confidence 679999999999877655555555544
No 18
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=25.68 E-value=42 Score=28.90 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=26.9
Q ss_pred cccceEEeeccccccCCCChHHHHHHHHHcCCccccC
Q 021619 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQP 220 (310)
Q Consensus 184 a~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gLeISQP 220 (310)
+.+|||++.|.|..++.-..+++..+....+..+.|+
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~ 122 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQT 122 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEec
Confidence 5899999999999987666677666655444444444
No 19
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=25.64 E-value=81 Score=25.92 Aligned_cols=24 Identities=13% Similarity=0.400 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhh
Q 021619 27 QLQFMAIMCTVMLFVVYRTTYYQY 50 (310)
Q Consensus 27 ~~~~~~~~~~~~~f~~~~~~~~q~ 50 (310)
.+-|+.++|+.+++++.|.+.+-.
T Consensus 30 ~faFV~~L~~fL~~liVRCfrIll 53 (81)
T PF11057_consen 30 AFAFVGLLCLFLGLLIVRCFRILL 53 (81)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHc
Confidence 356789999999999999998875
No 20
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=25.28 E-value=65 Score=26.63 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=26.8
Q ss_pred cccceEEeeccccccCCCChHHHHHHHHHc-CCccccCC
Q 021619 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSE-GFEISQPA 221 (310)
Q Consensus 184 a~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~-gLeISQPA 221 (310)
+.+|||++.|.|..++.-..++.++.+.++ +..|..+.
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~ 117 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGG 117 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEccc
Confidence 679999999999877666666666666433 55555544
No 21
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=25.28 E-value=83 Score=29.20 Aligned_cols=39 Identities=21% Similarity=0.102 Sum_probs=33.2
Q ss_pred cceEEeeccccccCCCChHHHHHHHHHcCCccccCCCCC
Q 021619 186 YDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDP 224 (310)
Q Consensus 186 YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gLeISQPALd~ 224 (310)
|+|+++++.|.-++.-..+++++.+++.+-...=+++-.
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~ 123 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIR 123 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEe
Confidence 449999999999999999999999999987776666533
No 22
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=23.95 E-value=51 Score=27.42 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=29.3
Q ss_pred ccHhHHHhhhC--CCCeEEEEEEEcCCCCcccccccCCc
Q 021619 123 DNVDAIVRKFL--PENFTVILFHYDGDVNAWRGLDWSNK 159 (310)
Q Consensus 123 ~~Vd~~VkKF~--~~nF~vmLFHYDG~vd~W~d~eWs~~ 159 (310)
..+..+-++|. .++|.++|.-.||.|.......|+-+
T Consensus 64 ~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~ 102 (118)
T PF13778_consen 64 EDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPE 102 (118)
T ss_pred HHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHH
Confidence 34567888885 78999999999999998877666544
No 23
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=23.89 E-value=1.3e+02 Score=27.16 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=18.0
Q ss_pred eeehhhHHHHHHHHHHHHHhhhhhhh
Q 021619 24 KMKQLQFMAIMCTVMLFVVYRTTYYQ 49 (310)
Q Consensus 24 ~~~~~~~~~~~~~~~~f~~~~~~~~q 49 (310)
+.-++-++++.++++++||.+++...
T Consensus 95 ~R~~~Vl~g~s~l~i~yfvir~~R~r 120 (163)
T PF06679_consen 95 KRALYVLVGLSALAILYFVIRTFRLR 120 (163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44445567777888888888876544
No 24
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=21.62 E-value=84 Score=23.30 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=24.9
Q ss_pred ccceEEeeccccccCCCChHHH-HHHHHHcCCccccCC
Q 021619 185 NYDYIFLWDEDLGVENFDPRRY-LEIVKSEGFEISQPA 221 (310)
Q Consensus 185 ~YdYIFlwDEDL~vd~F~~~rY-l~Ivk~~gLeISQPA 221 (310)
.+||+++.|.|.-++.-..++. ....+..+..+.++.
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP 114 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc
Confidence 6999999999988866555555 333344455555544
No 25
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=21.46 E-value=3.2e+02 Score=26.88 Aligned_cols=96 Identities=15% Similarity=0.256 Sum_probs=60.2
Q ss_pred CCccEEEEeecCCccccHhHHH---hhhCCCCeEEEEEEEcCCCCcccccccCC----ceEEEEEecccccccc------
Q 021619 108 SNRNLLAIPAGIKQKDNVDAIV---RKFLPENFTVILFHYDGDVNAWRGLDWSN----KAIHIAAQNQTKWWFA------ 174 (310)
Q Consensus 108 ~~k~Lla~~VG~kqk~~Vd~~V---kKF~~~nF~vmLFHYDG~vd~W~d~eWs~----~aIHVsa~kQtKWwfa------ 174 (310)
..--|+.+++|-=.. ..+.-+ +|+--.++.|.-|-+ +|.-..+++-+ +-+.|--.++.++|=.
T Consensus 34 ~tIgl~vfatGkY~~-f~~~F~~SAEk~Fm~g~~v~YyVF---TD~~~~~p~v~lg~~r~~~V~~v~~~~~W~~~sl~Rm 109 (271)
T cd02515 34 ITIGLTVFAVGKYTE-FLERFLESAEKHFMVGYRVIYYIF---TDKPAAVPEVELGPGRRLTVLKIAEESRWQDISMRRM 109 (271)
T ss_pred CEEEEEEEEeccHHH-HHHHHHHHHHHhccCCCeeEEEEE---eCCcccCcccccCCCceeEEEEeccccCCcHHHHHHH
Confidence 344689999996553 333222 222246788877776 45555555532 5577766677777722
Q ss_pred cccc-C--cccccccceEEeecccccc-CCCChHHHH
Q 021619 175 KRFL-H--PDVVSNYDYIFLWDEDLGV-ENFDPRRYL 207 (310)
Q Consensus 175 KRFL-H--PDiVa~YdYIFlwDEDL~v-d~F~~~rYl 207 (310)
+.|+ | -.+..++||+|.-|=|... +++.+|..-
T Consensus 110 ~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig~E~Lg 146 (271)
T cd02515 110 KTLADHIADRIGHEVDYLFCMDVDMVFQGPFGVETLG 146 (271)
T ss_pred HHHHHHHHHhhcccCCEEEEeeCCceEeecCCHHHhh
Confidence 3333 3 3378899999999988765 567766653
No 26
>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=20.49 E-value=38 Score=33.32 Aligned_cols=30 Identities=27% Similarity=0.633 Sum_probs=26.3
Q ss_pred ccceEEEeccccccchh-hHHHHhhhccccc
Q 021619 264 CTGFVEGMAPVFSRSAW-YCAWHLIQVIIYL 293 (310)
Q Consensus 264 CtgFVEvMAPVFSR~AW-rCvWhmIQNDLvh 293 (310)
+.|+.+...=||-.+.| ||+.|++-|=+=|
T Consensus 236 ~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~ 266 (381)
T PF00872_consen 236 HKGLKEAIREVFPGAKWQRCVVHLMRNVLRK 266 (381)
T ss_pred cccccccccccccchhhhhheechhhhhccc
Confidence 78999999999999999 9999999875554
No 27
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=20.32 E-value=61 Score=30.97 Aligned_cols=36 Identities=25% Similarity=0.589 Sum_probs=26.4
Q ss_pred cccccccC-cccccccceEEeeccccccCCCC--hHHHH
Q 021619 172 WFAKRFLH-PDVVSNYDYIFLWDEDLGVENFD--PRRYL 207 (310)
Q Consensus 172 wfaKRFLH-PDiVa~YdYIFlwDEDL~vd~F~--~~rYl 207 (310)
||.+|.-. -.++..||+|++.|-|+||-|-+ +|+|+
T Consensus 27 ~fFrRHCvva~~L~~~~~vlflDaDigVvNp~~~iEefi 65 (222)
T PF03314_consen 27 KFFRRHCVVAKILPEYDWVLFLDADIGVVNPNRRIEEFI 65 (222)
T ss_pred HHHHHHHHHHHHhccCCEEEEEcCCceeecCcccHHHhc
Confidence 45555432 35778899999999999997655 56666
Done!