Query 021619
Match_columns 310
No_of_seqs 117 out of 138
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 06:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021619.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021619hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2q78a1 d.38.1.7 (A:1-130) Unc 20.5 19 0.0014 27.9 1.7 47 190-236 22-71 (130)
2 d1omza_ c.68.1.15 (A:) Alpha-1 17.6 23 0.0017 25.5 1.5 34 183-216 79-112 (265)
3 d1lbua2 d.65.1.1 (A:84-213) Zn 15.5 55 0.004 24.7 3.4 36 195-230 78-114 (130)
4 d1vl2a1 c.26.2.1 (A:2-169) Arg 15.5 31 0.0023 23.8 1.7 35 108-146 1-35 (168)
5 d1qh5a_ d.157.1.2 (A:) Glyoxal 15.2 43 0.0031 27.7 2.9 35 184-219 11-49 (260)
6 d1foba_ c.1.8.3 (A:) Beta-1,4- 14.9 29 0.0021 29.7 1.7 29 118-146 55-84 (334)
7 d1qg8a_ c.68.1.1 (A:) Spore co 14.4 45 0.0033 25.5 2.6 102 110-213 2-116 (255)
8 d1xhba2 c.68.1.17 (A:95-422) P 14.3 42 0.003 27.0 2.4 39 184-222 106-144 (328)
9 d2qeda1 d.157.1.2 (A:1-251) Gl 14.0 52 0.0038 26.9 3.0 36 183-219 10-48 (251)
10 d1kcfa2 c.55.3.7 (A:39-256) Mi 13.6 61 0.0044 25.7 3.3 28 111-153 3-34 (218)
No 1
>d2q78a1 d.38.1.7 (A:1-130) Uncharacterized protein TM0581 {Thermotoga maritima [TaxId: 2336]}
Probab=20.52 E-value=19 Score=27.86 Aligned_cols=47 Identities=17% Similarity=0.356 Sum_probs=37.3
Q ss_pred EeeccccccCC---CChHHHHHHHHHcCCccccCCCCCCCCceeeeeeee
Q 021619 190 FLWDEDLGVEN---FDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIR 236 (310)
Q Consensus 190 FlwDEDL~vd~---F~~~rYl~Ivk~~gLeISQPALd~~s~~ihh~iT~R 236 (310)
.+||||.++-+ +..-.++.+|..-..++=||-|+++.+.+--.+.+|
T Consensus 22 ~~~~ed~~~~dl~VlaTp~lia~mE~a~~~~l~~~L~~g~ttVG~~v~I~ 71 (130)
T d2q78a1 22 MVWNEDIEMLDLHLVATSALIGVVHRVSYELLSRYLPNDYTAVVVETLAR 71 (130)
T ss_dssp GBCCSCGGGGGGCBBCHHHHHHHHHHHHHHHHHTTSCTTEEEEEEEEEEE
T ss_pred ccccCCCccccceEEchHHHHHHHHHHHHHHHHhhCCCCceEEEEEEEEE
Confidence 47999988765 557899999999999999999999855454555554
No 2
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.60 E-value=23 Score=25.50 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=23.3
Q ss_pred ccccceEEeeccccccCCCChHHHHHHHHHcCCc
Q 021619 183 VSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFE 216 (310)
Q Consensus 183 Va~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gLe 216 (310)
.+.-|||.+.|+|.-++.-..++.++.+.+++-.
T Consensus 79 ~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~ 112 (265)
T d1omza_ 79 EVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQ 112 (265)
T ss_dssp TCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTS
T ss_pred hCCcCEEEEeCcccCCCHHHHHHHHHHHHhCCCc
Confidence 3577999999999877655555555555554433
No 3
>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal catalytic domain {Streptomyces albus G [TaxId: 1962]}
Probab=15.50 E-value=55 Score=24.73 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=26.2
Q ss_pred ccccCCCChHHHHHHHHHcCC-ccccCCCCCCCCcee
Q 021619 195 DLGVENFDPRRYLEIVKSEGF-EISQPALDPNSTEIH 230 (310)
Q Consensus 195 DL~vd~F~~~rYl~Ivk~~gL-eISQPALd~~s~~ih 230 (310)
|+.+...++.++.+++++.|+ .|-.+++.+.++.+|
T Consensus 78 Di~v~g~~~~~~~~~a~~~gf~~~~g~G~~~~~~fvH 114 (130)
T d1lbua2 78 DLGAGSQGFCALAQAARNHGFTEILGPGYPGHNDHTH 114 (130)
T ss_dssp EECCTTTCHHHHHHHGGGTTCSEEECTTSTTCSSSEE
T ss_pred EEecCCCCHHHHHHHHHHcCCCccceeeeCCCCCEEE
Confidence 666788899999999999875 344456666665554
No 4
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=15.46 E-value=31 Score=23.84 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=26.5
Q ss_pred CCccEEEEeecCCccccHhHHHhhhCCCCeEEEEEEEcC
Q 021619 108 SNRNLLAIPAGIKQKDNVDAIVRKFLPENFTVILFHYDG 146 (310)
Q Consensus 108 ~~k~Lla~~VG~kqk~~Vd~~VkKF~~~nF~vmLFHYDG 146 (310)
+.|.+||++-|..+.....-+ ++. +|+|+.+|.|.
T Consensus 1 K~KIvvalSGGvDS~vl~~lL-~~~---~~~v~a~~~~~ 35 (168)
T d1vl2a1 1 KEKVVLAYSGGLDTSVILKWL-CEK---GFDVIAYVANV 35 (168)
T ss_dssp CCEEEEECCSSHHHHHHHHHH-HHT---TCEEEEEEEES
T ss_pred CCEEEEEeccHHHHHHHHHHH-HHc---CCeEEEEEccc
Confidence 357899999998887776644 443 68999998865
No 5
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.23 E-value=43 Score=27.70 Aligned_cols=35 Identities=20% Similarity=0.558 Sum_probs=27.0
Q ss_pred cccceEEeeccc----cccCCCChHHHHHHHHHcCCcccc
Q 021619 184 SNYDYIFLWDED----LGVENFDPRRYLEIVKSEGFEISQ 219 (310)
Q Consensus 184 a~YdYIFlwDED----L~vd~F~~~rYl~Ivk~~gLeISQ 219 (310)
..|-|+. +|++ +-||-.++++++++++++|++|..
T Consensus 11 DNy~Yli-~d~~t~~a~vIDP~~~~~i~~~l~~~~~~l~~ 49 (260)
T d1qh5a_ 11 DNYMYLV-IDDETKEAAIVDPVQPQKVVDAARKHGVKLTT 49 (260)
T ss_dssp TEEEEEE-EETTTTEEEEESCSSHHHHHHHHHHHTCEEEE
T ss_pred ceEEEEE-EECCCCEEEEEeCCCCHHHHHHHHHCCCeEEE
Confidence 3455543 4544 788999999999999999998864
No 6
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}
Probab=14.92 E-value=29 Score=29.67 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=24.2
Q ss_pred cCCccccHhHHHhhhCCCCeEEEE-EEEcC
Q 021619 118 GIKQKDNVDAIVRKFLPENFTVIL-FHYDG 146 (310)
Q Consensus 118 G~kqk~~Vd~~VkKF~~~nF~vmL-FHYDG 146 (310)
|....+.|++++++.....+.||| |||++
T Consensus 55 g~~~~~~~~~~~~~a~~~Gm~vll~~hysd 84 (334)
T d1foba_ 55 GSYDLDYNLELAKRVKAAGMSLYLDLHLSD 84 (334)
T ss_dssp CTTCHHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CcCcHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 556788999999999888888877 89976
No 7
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=14.41 E-value=45 Score=25.47 Aligned_cols=102 Identities=8% Similarity=0.016 Sum_probs=48.4
Q ss_pred ccEEEEeecCCccccHhHHHhhh---CCCCeEEEEEEEcCCCCccccc--ccC-CceEEEEEeccccccccccccCc---
Q 021619 110 RNLLAIPAGIKQKDNVDAIVRKF---LPENFTVILFHYDGDVNAWRGL--DWS-NKAIHIAAQNQTKWWFAKRFLHP--- 180 (310)
Q Consensus 110 k~Lla~~VG~kqk~~Vd~~VkKF---~~~nF~vmLFHYDG~vd~W~d~--eWs-~~aIHVsa~kQtKWwfaKRFLHP--- 180 (310)
+--+++|+=..+ ..+.+.++.- .-.||.| +++.||..|+=.++ ++. +.-|.+--.+..++....+.+-.
T Consensus 2 ~vSiiip~yN~~-~~l~~~l~Si~~Qt~~~~ei-ivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a 79 (255)
T d1qg8a_ 2 KVSVIMTSYNKS-DYVAKSISSILSQTFSDFEL-FIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAAL 79 (255)
T ss_dssp CEEEEEEESSCT-TTHHHHHHHHHTCSCCCEEE-EEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHH
T ss_pred EEEEEEecCCCH-HHHHHHHHHHHhCCCCCeEE-EEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhccc
Confidence 344556653333 3444444432 2367886 56668887763321 111 12244432222222211111100
Q ss_pred -c---cccccceEEeeccccccCCCChHHHHHHHHHc
Q 021619 181 -D---VVSNYDYIFLWDEDLGVENFDPRRYLEIVKSE 213 (310)
Q Consensus 181 -D---iVa~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~ 213 (310)
. -.+..|||+++|.|--++.--.++.++.++++
T Consensus 80 ~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~ 116 (255)
T d1qg8a_ 80 INQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTH 116 (255)
T ss_dssp HHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHhC
Confidence 0 02478999999988655443355555555443
No 8
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.29 E-value=42 Score=26.99 Aligned_cols=39 Identities=15% Similarity=0.054 Sum_probs=33.3
Q ss_pred cccceEEeeccccccCCCChHHHHHHHHHcCCccccCCC
Q 021619 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPAL 222 (310)
Q Consensus 184 a~YdYIFlwDEDL~vd~F~~~rYl~Ivk~~gLeISQPAL 222 (310)
+.-|||++.|.|..++.--.++.++.+.+.+-.+..|.+
T Consensus 106 a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~~~~ 144 (328)
T d1xhba2 106 SRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPII 144 (328)
T ss_dssp CCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEE
T ss_pred hhcceeeecCcccccChhHHHHHHHHHhcCCCeEEecce
Confidence 677999999999999888889999988888777777664
No 9
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]}
Probab=13.97 E-value=52 Score=26.92 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=27.2
Q ss_pred ccccceEEeeccc---cccCCCChHHHHHHHHHcCCcccc
Q 021619 183 VSNYDYIFLWDED---LGVENFDPRRYLEIVKSEGFEISQ 219 (310)
Q Consensus 183 Va~YdYIFlwDED---L~vd~F~~~rYl~Ivk~~gLeISQ 219 (310)
-..|-|++ +|++ +-||.-+++++++.++++|+.|..
T Consensus 10 ~DNy~YLi-~~~~~~avvIDPg~~~~il~~i~~~~~~l~~ 48 (251)
T d2qeda1 10 QDNYIWVL-TNDEGRCVIVDPGEAAPVLKAIAEHKWMPEA 48 (251)
T ss_dssp TTEEEEEE-ECTTSEEEEECCSCHHHHHHHHHHHTCEEEE
T ss_pred cCeEEEEE-EeCCCeEEEEcCCccHHHHHHHHHcCCceeE
Confidence 34566654 4544 678999999999999999998753
No 10
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=13.61 E-value=61 Score=25.66 Aligned_cols=28 Identities=32% Similarity=0.610 Sum_probs=23.8
Q ss_pred cEEEEeecCCccccHhHHHhhhCCCCeEEEEEEEcCC----CCcccc
Q 021619 111 NLLAIPAGIKQKDNVDAIVRKFLPENFTVILFHYDGD----VNAWRG 153 (310)
Q Consensus 111 ~Lla~~VG~kqk~~Vd~~VkKF~~~nF~vmLFHYDG~----vd~W~d 153 (310)
.+|++=||++ ||.++++.+++. +.+|+-
T Consensus 3 kIlSIDvGIk---------------NlAyc~l~~~~~~~~~I~~W~~ 34 (218)
T d1kcfa2 3 RVLGIDLGIK---------------NFSYCFASQNEDSKVIIHNWSV 34 (218)
T ss_dssp SEEEEEECST---------------TEEEEEEEECTTSCEEEEEEEE
T ss_pred eEEEEEeCcc---------------ccEEEEEeeCCCCCcEEEEeee
Confidence 5899999998 899999999884 777774
Done!