Your job contains 1 sequence.
>021621
MEMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFE
PVTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGI
DWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTE
ECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASYV
NFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQP
AIPTNAAKLD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021621
(310 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2181499 - symbol:EMB1873 "EMBRYO DEFECTIVE 187... 860 1.1e-120 2
UNIPROTKB|Q87UB2 - symbol:aguA "Agmatine deiminase" speci... 626 8.3e-81 2
UNIPROTKB|Q48Q55 - symbol:aguA "Agmatine deiminase" speci... 622 5.8e-80 2
UNIPROTKB|Q725C6 - symbol:aguA1 "Putative agmatine deimin... 575 4.1e-77 2
UNIPROTKB|Q725C4 - symbol:aguA2 "Putative agmatine deimin... 545 4.7e-74 2
UNIPROTKB|Q8EIF2 - symbol:aguA "Putative agmatine deimina... 497 2.0e-67 2
TIGR_CMR|SO_0887 - symbol:SO_0887 "conserved hypothetical... 497 2.0e-67 2
TIGR_CMR|GSU_1028 - symbol:GSU_1028 "peptidylarginine dei... 286 5.1e-39 2
TIGR_CMR|SPO_2980 - symbol:SPO_2980 "porphyromonas-type p... 240 2.1e-34 2
UNIPROTKB|Q607A0 - symbol:MCA1861 "Putative uncharacteriz... 254 4.3e-32 2
UNIPROTKB|Q0BXW8 - symbol:HNE_2998 "Peptidyl-arginine dei... 321 7.1e-29 1
UNIPROTKB|Q5HUL0 - symbol:CJE1027 "Peptidyl-arginine deim... 209 1.7e-15 1
TIGR_CMR|CJE_1027 - symbol:CJE_1027 "peptidyl-arginine de... 209 1.7e-15 1
UNIPROTKB|Q4KDY9 - symbol:PFL_2437 "Uncharacterized prote... 91 0.00094 1
>TAIR|locus:2181499 [details] [associations]
symbol:EMB1873 "EMBRYO DEFECTIVE 1873" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0009446 "putrescine biosynthetic process" evidence=IEA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0047632 "agmatine deiminase activity"
evidence=IEA;IDA] [GO:0006596 "polyamine biosynthetic process"
evidence=IDA] InterPro:IPR007466 InterPro:IPR017754 Pfam:PF04371
UniPathway:UPA00534 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0006596 eggNOG:COG2957 HOGENOM:HOG000239346 KO:K10536
GO:GO:0047632 GO:GO:0004668 TIGRFAMs:TIGR03380 EMBL:AL357612
EMBL:AK118589 EMBL:BT005341 EMBL:AB062682 IPI:IPI00528764
PIR:T50502 RefSeq:NP_196434.1 UniGene:At.25550 PDB:1VKP PDB:2Q3U
PDB:3H7C PDB:3H7K PDBsum:1VKP PDBsum:2Q3U PDBsum:3H7C PDBsum:3H7K
ProteinModelPortal:Q8GWW7 SMR:Q8GWW7 STRING:Q8GWW7 PaxDb:Q8GWW7
PRIDE:Q8GWW7 DNASU:830713 EnsemblPlants:AT5G08170.1 GeneID:830713
KEGG:ath:AT5G08170 TAIR:At5g08170 InParanoid:Q8GWW7 OMA:ANFLIMN
PhylomeDB:Q8GWW7 ProtClustDB:PLN02690 BioCyc:MetaCyc:MONOMER-2641
BRENDA:3.5.3.12 EvolutionaryTrace:Q8GWW7 Genevestigator:Q8GWW7
GermOnline:AT5G08170 GO:GO:0033388 Uniprot:Q8GWW7
Length = 383
Score = 860 (307.8 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
Identities = 155/218 (71%), Positives = 175/218 (80%)
Query: 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEP 61
E +PA HGY MPAEW+ H+Q W+GWP ER DNWR +AL AQRVFA VA AISKFEP
Sbjct: 3 ESRESPAEHGYYMPAEWDSHAQTWIGWP---ERQDNWRHNALPAQRVFADVAKAISKFEP 59
Query: 62 VTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGID 121
VTVCAS AQWENAR QLPE+IRV+EMSMN SWFRD+GPT +V K + +AGID
Sbjct: 60 VTVCASPAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGID 119
Query: 122 WNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEE 181
WNFN+WGG +DGCY DWS DL V+RKIL+ ER+PRF HSM+LEGGSIHVDGEGTCL TEE
Sbjct: 120 WNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSMILEGGSIHVDGEGTCLVTEE 179
Query: 182 CLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 219
CLLNKNRNPH++K QIE ELK YLGV IWLPRGL+G
Sbjct: 180 CLLNKNRNPHMSKEQIEEELKKYLGVQSFIWLPRGLYG 217
Score = 348 (127.6 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
Identities = 69/90 (76%), Positives = 74/90 (82%)
Query: 219 GMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVG 278
G+ DGEA PRLAGTRLAASYVNFYIANGGII PQFGD D EA+RVLS FP + VVG
Sbjct: 291 GITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEAIRVLSDTFPHHSVVG 350
Query: 279 IERAREIVLGGGNIHCITQQQPAIPTNAAK 308
IE AREIVL GGNIHCITQQQPA PT+ A+
Sbjct: 351 IENAREIVLAGGNIHCITQQQPAEPTSVAE 380
>UNIPROTKB|Q87UB2 [details] [associations]
symbol:aguA "Agmatine deiminase" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01841 InterPro:IPR007466 InterPro:IPR017754 Pfam:PF04371
UniPathway:UPA00534 eggNOG:COG2957 HOGENOM:HOG000239346 KO:K10536
OMA:DGHVDNF ProtClustDB:PRK13551 GO:GO:0047632 GO:GO:0004668
TIGRFAMs:TIGR03380 GO:GO:0033388 EMBL:AE016853 RefSeq:NP_795120.1
ProteinModelPortal:Q87UB2 SMR:Q87UB2 GeneID:1187080
GenomeReviews:AE016853_GR KEGG:pst:PSPTO_5393 PATRIC:20002330
BioCyc:PSYR223283:GJIX-5461-MONOMER Uniprot:Q87UB2
Length = 368
Score = 626 (225.4 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
Identities = 124/224 (55%), Positives = 149/224 (66%)
Query: 3 MNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPV 62
+N TP G+ MPAEW P +Q WM WP ER DNWR AQ +A AI++FEPV
Sbjct: 4 LNSTPRADGFHMPAEWAPQTQVWMVWP---ERPDNWRLGGKPAQAAHVAIAKAIARFEPV 60
Query: 63 TVCASAAQWENARSQLP-ENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGID 121
TV SAAQ++NAR++L NIRV+EMS N +W RD+GPT V+N ++ G++
Sbjct: 61 TVAVSAAQYDNARARLDMPNIRVVEMSSNDAWVRDSGPTFVINDRG--------ELRGVN 112
Query: 122 WNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFP-HSMVLEGGSIHVDGEGTCLTTE 180
W FN+WGG D G Y W+LD QV K+L ER PR+ VLEGGSIHVDGEGT +TTE
Sbjct: 113 WEFNAWGGFDGGLYAPWNLDSQVGSKVLEIERCPRYATQGFVLEGGSIHVDGEGTLITTE 172
Query: 181 ECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDG 224
ECLLN+NRNPHLT+ QIE L YL V KIIWLP GLF DG
Sbjct: 173 ECLLNRNRNPHLTREQIEAVLSDYLAVDKIIWLPDGLFNDETDG 216
Score = 204 (76.9 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
Identities = 42/76 (55%), Positives = 53/76 (69%)
Query: 226 AKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREI 285
++ R RLA SYVNF I NGGII P F D D +A +L + FP++EVV + RE+
Sbjct: 291 SQERNPSVRLAGSYVNFLIVNGGIIAPSFDDPM-DEKAREILQKLFPEHEVV-MAPGREL 348
Query: 286 VLGGGNIHCITQQQPA 301
+LGGGNIHC+TQQQPA
Sbjct: 349 LLGGGNIHCLTQQQPA 364
>UNIPROTKB|Q48Q55 [details] [associations]
symbol:aguA "Agmatine deiminase" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008295 "spermidine biosynthetic
process" evidence=ISS] [GO:0009446 "putrescine biosynthetic
process" evidence=ISS] [GO:0047632 "agmatine deiminase activity"
evidence=ISS] HAMAP:MF_01841 InterPro:IPR007466 InterPro:IPR017754
Pfam:PF04371 UniPathway:UPA00534 GO:GO:0005737 eggNOG:COG2957
HOGENOM:HOG000239346 KO:K10536 OMA:DGHVDNF ProtClustDB:PRK13551
GO:GO:0047632 GO:GO:0004668 GO:GO:0009446 TIGRFAMs:TIGR03380
GO:GO:0033388 EMBL:CP000058 RefSeq:YP_272461.1 HSSP:Q8DW17
ProteinModelPortal:Q48Q55 SMR:Q48Q55 STRING:Q48Q55 GeneID:3556359
GenomeReviews:CP000058_GR KEGG:psp:PSPPH_0153 PATRIC:19969300
GO:GO:0008295 Uniprot:Q48Q55
Length = 368
Score = 622 (224.0 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
Identities = 122/224 (54%), Positives = 150/224 (66%)
Query: 3 MNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPV 62
+N TP G+ MPAEW P +Q WM WP ER DNWR AQ +A AI++FEPV
Sbjct: 4 LNSTPRADGFHMPAEWAPQTQVWMVWP---ERPDNWRLGGKPAQAAHVAIAKAIARFEPV 60
Query: 63 TVCASAAQWENARSQLP-ENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGID 121
TV SAAQ++NAR++L NIRV+EMS N +W RD+GPT V+N+ +V G++
Sbjct: 61 TVAVSAAQYDNARARLDVPNIRVVEMSSNDAWVRDSGPTFVINERG--------EVRGVN 112
Query: 122 WNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRF-PHSMVLEGGSIHVDGEGTCLTTE 180
W FN+WGG D G Y W+LD Q+ K+L ER PR+ VLEGGSIHVDGEGT +TTE
Sbjct: 113 WEFNAWGGFDGGLYAPWNLDSQLGSKVLEIERCPRYVTKGFVLEGGSIHVDGEGTLITTE 172
Query: 181 ECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDG 224
ECLLN+NRNPHLT+ QIE L YL V K++WLP GLF DG
Sbjct: 173 ECLLNRNRNPHLTREQIEAILGDYLAVDKVVWLPDGLFNDETDG 216
Score = 200 (75.5 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
Identities = 42/76 (55%), Positives = 52/76 (68%)
Query: 226 AKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREI 285
++ R RLA SYVNF I NGGII P F D D +A +L FP++EVV + RE+
Sbjct: 291 SQERNPSVRLAGSYVNFLIVNGGIIAPSFDDPM-DEKARELLQTLFPEHEVV-MAPGREL 348
Query: 286 VLGGGNIHCITQQQPA 301
+LGGGNIHC+TQQQPA
Sbjct: 349 LLGGGNIHCLTQQQPA 364
>UNIPROTKB|Q725C6 [details] [associations]
symbol:aguA1 "Putative agmatine deiminase 1" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01841 InterPro:IPR007466 InterPro:IPR017754
Pfam:PF04371 EMBL:AE017262 GenomeReviews:AE017262_GR
RefSeq:YP_012658.1 ProteinModelPortal:Q725C6 STRING:Q725C6
GeneID:2798863 KEGG:lmf:LMOf2365_0047 PATRIC:20321266
eggNOG:COG2957 HOGENOM:HOG000239346 KO:K10536 OMA:DGHVDNF
ProtClustDB:PRK13551 GO:GO:0047632 GO:GO:0004668 GO:GO:0009446
TIGRFAMs:TIGR03380 Uniprot:Q725C6
Length = 364
Score = 575 (207.5 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
Identities = 117/209 (55%), Positives = 145/209 (69%)
Query: 11 GYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQ 70
G+ MP E+E H+ C++ WP ER DNWR A AQ+ F VATAIS+FEPVTV AS++Q
Sbjct: 12 GFRMPGEFEKHAGCYIIWP---ERPDNWRLGAKPAQKAFVDVATAISRFEPVTVVASSSQ 68
Query: 71 WENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGV 130
+ NAR LP+ IRV+EM + +W RD+GPT VVN S V G+DW+FNSWGG+
Sbjct: 69 YVNARYMLPDEIRVVEMDNDDAWVRDSGPTFVVNDSG--------DVRGVDWSFNSWGGL 120
Query: 131 DDGCYRDWSLDLQVARKILSTERLPRFPHS-MVLEGGSIHVDGEGTCLTTEECLLNKNRN 189
DG Y W D QVA+KI ER R+ + VLEGGSIHVDGEGT +TTEECLL++ RN
Sbjct: 121 VDGLYFPWDKDDQVAQKICELERKDRYRLADFVLEGGSIHVDGEGTLVTTEECLLSEGRN 180
Query: 190 PHLTKGQIENELKAYLGVMKIIWLPRGLF 218
P L+K QIE LK YL + KIIWL RG++
Sbjct: 181 PQLSKQQIEMVLKEYLNLEKIIWLKRGIY 209
Score = 220 (82.5 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
Identities = 45/73 (61%), Positives = 53/73 (72%)
Query: 228 PRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVL 287
PR G RLAASY+N+Y ANGG++ P FGD D A L Q +P EVVG+ +AREI+L
Sbjct: 292 PREEGDRLAASYINYYTANGGVVFPLFGDPN-DELAREKLRQLYPNCEVVGV-KAREILL 349
Query: 288 GGGNIHCITQQQP 300
GGGNIHCITQQ P
Sbjct: 350 GGGNIHCITQQVP 362
>UNIPROTKB|Q725C4 [details] [associations]
symbol:aguA2 "Putative agmatine deiminase 2" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01841 InterPro:IPR007466 InterPro:IPR017754 Pfam:PF04371
EMBL:AE017262 GenomeReviews:AE017262_GR eggNOG:COG2957
HOGENOM:HOG000239346 KO:K10536 ProtClustDB:PRK13551 GO:GO:0047632
GO:GO:0004668 GO:GO:0009446 TIGRFAMs:TIGR03380 RefSeq:YP_012660.1
ProteinModelPortal:Q725C4 SMR:Q725C4 STRING:Q725C4 GeneID:2798636
KEGG:lmf:LMOf2365_0049 PATRIC:20321270 OMA:HAKVLVC Uniprot:Q725C4
Length = 369
Score = 545 (196.9 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 107/218 (49%), Positives = 141/218 (64%)
Query: 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEP 61
++ G P G+ MP E+EPH C+M WP ER DNWR AQ+ + +VA AIS FEP
Sbjct: 3 QLKGLPVEDGFRMPGEYEPHIGCFMIWP---ERPDNWRLGGKPAQQNYKEVAVAISNFEP 59
Query: 62 VTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGID 121
VT+ S Q++NAR +LP+ IRVIEMS + +W RD GP+ +VN ++ G+D
Sbjct: 60 VTMFVSPNQYKNARKELPDTIRVIEMSNDDAWIRDYGPSFLVNDKG--------EMRGVD 111
Query: 122 WNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHS-MVLEGGSIHVDGEGTCLTTE 180
W FN+WGG+ DG Y W D Q+A+K+ ERL + +LEG SIHVDGEGT +TTE
Sbjct: 112 WGFNAWGGLLDGLYFPWDKDNQIAKKVCDLERLDYYSQKDFILEGCSIHVDGEGTLVTTE 171
Query: 181 ECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLF 218
ECLL++ RNP+LTK +IE LK Y V K+IWL G +
Sbjct: 172 ECLLSEGRNPNLTKIEIEQTLKKYFHVQKVIWLKHGFY 209
Score = 221 (82.9 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 46/73 (63%), Positives = 54/73 (73%)
Query: 228 PRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVL 287
PR AG RLAASYVN+Y ANG II P F D K D +A +L Q +P ++VGI +AREI+L
Sbjct: 292 PRQAGDRLAASYVNYYTANGAIIFPLFDDPK-DKDAQELLEQLYPDRKIVGI-KAREILL 349
Query: 288 GGGNIHCITQQQP 300
GGGNIHCITQ P
Sbjct: 350 GGGNIHCITQHLP 362
>UNIPROTKB|Q8EIF2 [details] [associations]
symbol:aguA "Putative agmatine deiminase" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01841
InterPro:IPR007466 InterPro:IPR017754 Pfam:PF04371 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG2957 HOGENOM:HOG000239346
KO:K10536 OMA:DGHVDNF ProtClustDB:PRK13551 GO:GO:0047632
GO:GO:0004668 GO:GO:0009446 TIGRFAMs:TIGR03380 RefSeq:NP_716518.2
ProteinModelPortal:Q8EIF2 SMR:Q8EIF2 GeneID:1168734
KEGG:son:SO_0887 PATRIC:23521437 Uniprot:Q8EIF2
Length = 370
Score = 497 (180.0 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 101/218 (46%), Positives = 131/218 (60%)
Query: 7 PALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCA 66
P+ G+ MPAEW WM WP Y R DNWR +AQ FAKV AI PV +
Sbjct: 15 PSQDGFYMPAEWAAQQAVWMIWP--Y-RPDNWRAAGAYAQATFAKVVDAIGAATPVYMGV 71
Query: 67 SAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNS 126
A A++ +P ++ ++EM N W RDTGPT+VVN + G + G+DW FN+
Sbjct: 72 PKAFLAKAKTVMPSHVTLVEMDSNDCWARDTGPTVVVN----AEG----ECRGVDWGFNA 123
Query: 127 WGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNK 186
WGG + G Y W D QVA+++L+ R+ ++LEGGSIHVDGEGTC+T+ ECLLN
Sbjct: 124 WGGHNGGLYFPWDKDEQVAQQMLAQHGFARYRAPLILEGGSIHVDGEGTCMTSAECLLNA 183
Query: 187 NRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDG 224
NRNP LTK QIE L+ YL V + IWL G++ DG
Sbjct: 184 NRNPELTKEQIEGLLRDYLNVKQFIWLQDGVYMDETDG 221
Score = 206 (77.6 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 44/81 (54%), Positives = 54/81 (66%)
Query: 221 IHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIE 280
+ +G PR AG RLA SYVNF I N I+ P D D A + L + FP++E+VG+
Sbjct: 290 VTEGTGVPRTAGERLAGSYVNFLITNHRIVFPLL-DPATDDIAAQKLQEIFPEHEIVGVP 348
Query: 281 RAREIVLGGGNIHCITQQQPA 301
AREI+LGGGNIHCITQQ PA
Sbjct: 349 -AREILLGGGNIHCITQQIPA 368
>TIGR_CMR|SO_0887 [details] [associations]
symbol:SO_0887 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01841 InterPro:IPR007466 InterPro:IPR017754 Pfam:PF04371
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG2957
HOGENOM:HOG000239346 KO:K10536 OMA:DGHVDNF ProtClustDB:PRK13551
GO:GO:0047632 GO:GO:0004668 GO:GO:0009446 TIGRFAMs:TIGR03380
RefSeq:NP_716518.2 ProteinModelPortal:Q8EIF2 SMR:Q8EIF2
GeneID:1168734 KEGG:son:SO_0887 PATRIC:23521437 Uniprot:Q8EIF2
Length = 370
Score = 497 (180.0 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 101/218 (46%), Positives = 131/218 (60%)
Query: 7 PALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCA 66
P+ G+ MPAEW WM WP Y R DNWR +AQ FAKV AI PV +
Sbjct: 15 PSQDGFYMPAEWAAQQAVWMIWP--Y-RPDNWRAAGAYAQATFAKVVDAIGAATPVYMGV 71
Query: 67 SAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNS 126
A A++ +P ++ ++EM N W RDTGPT+VVN + G + G+DW FN+
Sbjct: 72 PKAFLAKAKTVMPSHVTLVEMDSNDCWARDTGPTVVVN----AEG----ECRGVDWGFNA 123
Query: 127 WGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNK 186
WGG + G Y W D QVA+++L+ R+ ++LEGGSIHVDGEGTC+T+ ECLLN
Sbjct: 124 WGGHNGGLYFPWDKDEQVAQQMLAQHGFARYRAPLILEGGSIHVDGEGTCMTSAECLLNA 183
Query: 187 NRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDG 224
NRNP LTK QIE L+ YL V + IWL G++ DG
Sbjct: 184 NRNPELTKEQIEGLLRDYLNVKQFIWLQDGVYMDETDG 221
Score = 206 (77.6 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 44/81 (54%), Positives = 54/81 (66%)
Query: 221 IHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIE 280
+ +G PR AG RLA SYVNF I N I+ P D D A + L + FP++E+VG+
Sbjct: 290 VTEGTGVPRTAGERLAGSYVNFLITNHRIVFPLL-DPATDDIAAQKLQEIFPEHEIVGVP 348
Query: 281 RAREIVLGGGNIHCITQQQPA 301
AREI+LGGGNIHCITQQ PA
Sbjct: 349 -AREILLGGGNIHCITQQIPA 368
>TIGR_CMR|GSU_1028 [details] [associations]
symbol:GSU_1028 "peptidylarginine deiminase-related
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0004668
"protein-arginine deiminase activity" evidence=ISS] [GO:0019546
"arginine deiminase pathway" evidence=ISS] InterPro:IPR007466
Pfam:PF04371 EMBL:AE017180 GenomeReviews:AE017180_GR KO:K10536
GO:GO:0004668 GO:GO:0009446 OMA:ANFLIMN HOGENOM:HOG000239345
RefSeq:NP_952082.1 ProteinModelPortal:Q74ED4 SMR:Q74ED4
GeneID:2685626 KEGG:gsu:GSU1028 PATRIC:22024826
ProtClustDB:CLSK828145 BioCyc:GSUL243231:GH27-1023-MONOMER
Uniprot:Q74ED4
Length = 344
Score = 286 (105.7 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 74/208 (35%), Positives = 108/208 (51%)
Query: 14 MPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCAS-----A 68
+PAEWE + WP + D W + VFA++ I++FE V A+ A
Sbjct: 5 LPAEWEEQDGVLIAWP--HPGSD-WYPWLRLVEPVFAQIVREITRFETALVVAADGERTA 61
Query: 69 AQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWG 128
A E +++ E + ++E+ N +W RD GP + V + P + +D+ FN WG
Sbjct: 62 ALLEAVGARM-ERVAIVELPTNDTWARDFGP-VTVERDGR------PVL--LDFGFNGWG 111
Query: 129 GVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNR 188
+ RD +L + R + +P +VLEGGSI DG GT LTT ECLLN NR
Sbjct: 112 -LKFAADRD-NLVTRRLRHLGIFGDIPAEMVGLVLEGGSIESDGRGTVLTTAECLLNPNR 169
Query: 189 NPHLTKGQIENELKAYLGVMKIIWLPRG 216
NPHL++ +IE L YLG +++WL G
Sbjct: 170 NPHLSRAEIEEALARYLGTERVLWLENG 197
Score = 147 (56.8 bits), Expect = 5.1e-39, Sum P(2) = 5.1e-39
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 232 GTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGN 291
G RL A+Y NF + NG ++ P + D D A+ + +AFP E+VGI+ R +++ G+
Sbjct: 270 GQRLPATYANFLVINGAVLVPVYDDPA-DEAALEAIGRAFPGREIVGID-CRPLIIQHGS 327
Query: 292 IHCITQQQP 300
+HC+T Q P
Sbjct: 328 LHCVTMQLP 336
>TIGR_CMR|SPO_2980 [details] [associations]
symbol:SPO_2980 "porphyromonas-type peptidyl-arginine
deiminase family protein" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR007466 Pfam:PF04371
EMBL:CP000031 GenomeReviews:CP000031_GR HOGENOM:HOG000239346
KO:K10536 GO:GO:0004668 GO:GO:0009446 RefSeq:YP_168186.1
ProteinModelPortal:Q5LP70 GeneID:3195665 KEGG:sil:SPO2980
PATRIC:23379395 OMA:VDFNFNG ProtClustDB:CLSK934013 Uniprot:Q5LP70
Length = 338
Score = 240 (89.5 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 70/211 (33%), Positives = 103/211 (48%)
Query: 11 GYLMPAEWEPHSQCWMGWPV-RYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAA 69
G+ +P E H + +M WPV R D D AQ+ A +A AI++FEPVT+ A+A
Sbjct: 11 GFHVPPEEARHDRTFMQWPVNRRVHPDPVFLDM--AQQTIADIANAIAEFEPVTLLAAAE 68
Query: 70 QWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGG 129
AR +L + + + ++ W RD GP A G V+ I FN WG
Sbjct: 69 DHARARRKLSDKVTLWDIPTEDLWCRDAGPLF------ARDGRGGLAVSHIQ--FNGWGR 120
Query: 130 VDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRN 189
+R D +VA ++ LP P + E G + DG G + E +N NRN
Sbjct: 121 KQ--VHRR---DARVAEQVAQRLGLPLLPAGLRGEAGGVEQDGHGLLMAHESSWVNDNRN 175
Query: 190 PHLTKGQIENEL-KAYLGVMKIIWLPRGLFG 219
P L++ +IE L +AY G ++IW P G++G
Sbjct: 176 PGLSRAEIEARLLRAY-GAQRMIWSP-GVWG 204
Score = 149 (57.5 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 229 RLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLG 288
R+ ASY N+Y+ NG +I QFGD + D A R L++ +P E+V + +G
Sbjct: 266 RVKSVDFVASYANYYVCNGAVIAAQFGDAETDRIAARALARHYPGREIVTLNVDPLGEMG 325
Query: 289 GGNIHCITQQQPA 301
GG IHC TQQ PA
Sbjct: 326 GG-IHCATQQMPA 337
>UNIPROTKB|Q607A0 [details] [associations]
symbol:MCA1861 "Putative uncharacterized protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR007466 Pfam:PF04371 GO:GO:0004668 GO:GO:0009446
OMA:ANFLIMN EMBL:AE017282 GenomeReviews:AE017282_GR
HOGENOM:HOG000239345 RefSeq:YP_114298.1 ProteinModelPortal:Q607A0
GeneID:3103173 KEGG:mca:MCA1861 PATRIC:22607568 Uniprot:Q607A0
Length = 367
Score = 254 (94.5 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 73/208 (35%), Positives = 101/208 (48%)
Query: 17 EWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTV-CASAAQWEN-- 73
EWE S + WP + W D ++ +A +A A+S+ E + + C AA
Sbjct: 28 EWEKQSAVLIAWPPGHGDFAPWLDQV---EQTYAAIAAALSQRETLLIACLDAAHERRIG 84
Query: 74 ---ARSQLPEN-IRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGG 129
A + +N I I + + W RDT P S G P++ +D+ FN WGG
Sbjct: 85 DILANTGADKNRIVFIRIPYDDIWVRDTAPL-----SRLHEGR--PEL--LDFRFNGWGG 135
Query: 130 VDDGCYRDWSLDLQ-VARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNR 188
+ C D +L + VA I R PR VLEGGS+ DG GT LTT CLLN NR
Sbjct: 136 KYE-CSDDAALAARLVATGIFG--RTPRVQVDFVLEGGSVETDGLGTVLTTSRCLLNPNR 192
Query: 189 NPHLTKGQIENELKAYLGVMKIIWLPRG 216
NP ++ +IE+ L LG +I+WL G
Sbjct: 193 NPGYSRAEIEDCLARTLGADRILWLDHG 220
Score = 113 (44.8 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 232 GTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGN 291
G RL A+Y NF I N ++ P + D D A+ L+ FP E+V I ++ G+
Sbjct: 293 GQRLPATYANFLIVNDAVLVPVYADPA-DSVAIERLAPCFPDREIVPIH-CTPLIRQYGS 350
Query: 292 IHCITQQQP 300
+HC++ Q P
Sbjct: 351 LHCMSMQFP 359
>UNIPROTKB|Q0BXW8 [details] [associations]
symbol:HNE_2998 "Peptidyl-arginine deiminase family
protein" species:228405 "Hyphomonas neptunium ATCC 15444"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR007466
Pfam:PF04371 eggNOG:COG2957 HOGENOM:HOG000239346 KO:K10536
GO:GO:0004668 GO:GO:0009446 EMBL:CP000158 GenomeReviews:CP000158_GR
RefSeq:YP_761675.1 ProteinModelPortal:Q0BXW8 STRING:Q0BXW8
GeneID:4287781 KEGG:hne:HNE_2998 PATRIC:32218869 OMA:CICEDEG
ProtClustDB:CLSK2781004 BioCyc:HNEP228405:GI69-3004-MONOMER
Uniprot:Q0BXW8
Length = 327
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 82/213 (38%), Positives = 104/213 (48%)
Query: 14 MPAEWEPHSQCWMGWPVRYERL-DNWRDDALHAQRVFAKVATAISKFEPVTV-CASAAQW 71
+P EW P + W GWP RL + W D A+ A + F PV + C S
Sbjct: 8 LPPEWAPQAALWAGWP----RLAEEWGGDLTAARSEIAGFIRKAASFVPVKIACGSREAA 63
Query: 72 ENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVD 131
+AR ++E+ W RDTGP VV + AS AQ + FN WGG
Sbjct: 64 ASARLATGGAGEIVEIPTGDIWLRDTGP--VVTGTGASRQAQV-------FRFNGWGGK- 113
Query: 132 DGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPH 191
Y D + A ++ E LP HS++LEGG I DGEG LTT +CLLN NRNP
Sbjct: 114 ---YL-MEGDTETAGEVARVESLPARRHSLILEGGGIDADGEGRLLTTRQCLLNPNRNPQ 169
Query: 192 LTKGQIENELKAYLGVMKIIWLPRGLFGMIHDG 224
L++ +IE L A LGV + IWL GL DG
Sbjct: 170 LSQAEIEASLTAALGVDEFIWLGDGLMNDHTDG 202
Score = 140 (54.3 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 41/122 (33%), Positives = 68/122 (55%)
Query: 182 CLLNKNRN-PHL-TKGQIENELKAYLGVMKIIWLPRGLFGMIHDGEAKPRLAGTRLAASY 239
C +RN P+ T +IE L ++ G+M + +P G++H G+ P + AS+
Sbjct: 218 CQHPADRNDPNAETLQEIERTLVSH-GLM-VSSIPSP--GLVHFGDGVP------VPASH 267
Query: 240 VNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQ 299
+NF I N ++ P + D+ + A+ L FP EV+G+ AR I+ GGG+ HC+T++
Sbjct: 268 MNFTITNRAVLVPVYEDR-FSAVALSDLKALFPGREVIGLP-ARAILAGGGSFHCMTREI 325
Query: 300 PA 301
PA
Sbjct: 326 PA 327
>UNIPROTKB|Q5HUL0 [details] [associations]
symbol:CJE1027 "Peptidyl-arginine deiminase family protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR007466 Pfam:PF04371
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG2957
GO:GO:0004668 GO:GO:0009446 OMA:CICEDEG RefSeq:YP_179025.1
ProteinModelPortal:Q5HUL0 STRING:Q5HUL0 GeneID:3231538
KEGG:cjr:CJE1027 PATRIC:20043855 HOGENOM:HOG000239345
ProtClustDB:CLSK879009 BioCyc:CJEJ195099:GJC0-1055-MONOMER
Uniprot:Q5HUL0
Length = 325
Score = 209 (78.6 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 57/189 (30%), Positives = 90/189 (47%)
Query: 32 YERLDNWRDDALHAQRVFAKVATAISKFEPVTVCA-SAAQWENARSQLPENIRVIEMSMN 90
+E+ D W + + + A+S+F+ V + A + +EN + + + + N
Sbjct: 20 HEKSD-WNPYLEEILQSYKEFVKAVSEFQKVLLIAPKQSDFENFKDI--KKVEYFKCDTN 76
Query: 91 GSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILS 150
+W RD G ++ ++ +D+ FN+WG LD V K+
Sbjct: 77 DTWIRDFGAIDIIENG---------RLKALDFTFNAWGNKFQS-----ELDNAVNSKLFK 122
Query: 151 T---ERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGV 207
E L + +LEGGSI +GEG LT+ CLLN+NRN HL K QI+ +LK G+
Sbjct: 123 EKFKEELKKV--DFILEGGSIDFNGEGVMLTSSHCLLNENRNSHLNKTQIDIKLKEIFGL 180
Query: 208 MKIIWLPRG 216
+IIWL G
Sbjct: 181 KQIIWLENG 189
Score = 127 (49.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 41/139 (29%), Positives = 65/139 (46%)
Query: 163 LEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIW-LPRGLFGMI 221
LE G I D + T ++KN H E+E YL + K+ L + F ++
Sbjct: 186 LENGFIKGDDTDHHIDTLARFIDKNTIAHCICEDEEDE--HYLPLQKMKEELKKTGFDLV 243
Query: 222 HDGEAKPRL-AGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIE 280
P G RL A+Y NF N +I P + DK D + LS+A P ++++G++
Sbjct: 244 ELPIPNPLYYEGRRLGATYANFVFINNALIVPFYKDKN-DEIIAKRLSKALPSHKIIGVD 302
Query: 281 RAREIVLGGGNIHCITQQQ 299
AR + G++HC Q +
Sbjct: 303 -ARVFLRQNGSLHCSCQNR 320
>TIGR_CMR|CJE_1027 [details] [associations]
symbol:CJE_1027 "peptidyl-arginine deiminase family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0004668
"protein-arginine deiminase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR007466 Pfam:PF04371
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG2957
GO:GO:0004668 GO:GO:0009446 OMA:CICEDEG RefSeq:YP_179025.1
ProteinModelPortal:Q5HUL0 STRING:Q5HUL0 GeneID:3231538
KEGG:cjr:CJE1027 PATRIC:20043855 HOGENOM:HOG000239345
ProtClustDB:CLSK879009 BioCyc:CJEJ195099:GJC0-1055-MONOMER
Uniprot:Q5HUL0
Length = 325
Score = 209 (78.6 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 57/189 (30%), Positives = 90/189 (47%)
Query: 32 YERLDNWRDDALHAQRVFAKVATAISKFEPVTVCA-SAAQWENARSQLPENIRVIEMSMN 90
+E+ D W + + + A+S+F+ V + A + +EN + + + + N
Sbjct: 20 HEKSD-WNPYLEEILQSYKEFVKAVSEFQKVLLIAPKQSDFENFKDI--KKVEYFKCDTN 76
Query: 91 GSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDDGCYRDWSLDLQVARKILS 150
+W RD G ++ ++ +D+ FN+WG LD V K+
Sbjct: 77 DTWIRDFGAIDIIENG---------RLKALDFTFNAWGNKFQS-----ELDNAVNSKLFK 122
Query: 151 T---ERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGV 207
E L + +LEGGSI +GEG LT+ CLLN+NRN HL K QI+ +LK G+
Sbjct: 123 EKFKEELKKV--DFILEGGSIDFNGEGVMLTSSHCLLNENRNSHLNKTQIDIKLKEIFGL 180
Query: 208 MKIIWLPRG 216
+IIWL G
Sbjct: 181 KQIIWLENG 189
Score = 127 (49.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 41/139 (29%), Positives = 65/139 (46%)
Query: 163 LEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKGQIENELKAYLGVMKIIW-LPRGLFGMI 221
LE G I D + T ++KN H E+E YL + K+ L + F ++
Sbjct: 186 LENGFIKGDDTDHHIDTLARFIDKNTIAHCICEDEEDE--HYLPLQKMKEELKKTGFDLV 243
Query: 222 HDGEAKPRL-AGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIE 280
P G RL A+Y NF N +I P + DK D + LS+A P ++++G++
Sbjct: 244 ELPIPNPLYYEGRRLGATYANFVFINNALIVPFYKDKN-DEIIAKRLSKALPSHKIIGVD 302
Query: 281 RAREIVLGGGNIHCITQQQ 299
AR + G++HC Q +
Sbjct: 303 -ARVFLRQNGSLHCSCQNR 320
>UNIPROTKB|Q4KDY9 [details] [associations]
symbol:PFL_2437 "Uncharacterized protein" species:220664
"Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR007466
Pfam:PF04371 EMBL:CP000076 GenomeReviews:CP000076_GR eggNOG:COG2957
GO:GO:0004668 GO:GO:0009446 RefSeq:YP_259544.1
ProteinModelPortal:Q4KDY9 STRING:Q4KDY9 GeneID:3477061
KEGG:pfl:PFL_2437 PATRIC:19874151
BioCyc:PFLU220664:GIX8-2451-MONOMER Uniprot:Q4KDY9
Length = 65
Score = 91 (37.1 bits), Expect = 0.00094, P = 0.00094
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 261 GEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAI 302
G+A R+L+ +P +V+ ++ I GGG IHC+T QQP +
Sbjct: 25 GKAHRLLASLYPGRQVIQLD-IDAIAAGGGGIHCVTHQQPGL 65
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.432 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 310 310 0.00079 116 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 624 (66 KB)
Total size of DFA: 257 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.83u 0.21s 23.04t Elapsed: 00:00:01
Total cpu time: 22.83u 0.21s 23.04t Elapsed: 00:00:01
Start: Fri May 10 03:51:23 2013 End: Fri May 10 03:51:24 2013