BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021621
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H7K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Agmatine
Deiminase Complexed With A Covalently Bound Reaction
Intermediate
Length = 383
Score = 323 bits (827), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 151/218 (69%), Positives = 170/218 (77%), Gaps = 3/218 (1%)
Query: 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEP 61
E +PA HGY PAEW+ H+Q W+GWP ER DNWR +AL AQRVFA VA AISKFEP
Sbjct: 3 ESRESPAEHGYYXPAEWDSHAQTWIGWP---ERQDNWRHNALPAQRVFAGVAKAISKFEP 59
Query: 62 VTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGID 121
VTVCAS AQWENAR QLPE+IRV+E S N SWFRD+GPT +V K + +AGID
Sbjct: 60 VTVCASPAQWENARKQLPEDIRVVEXSXNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGID 119
Query: 122 WNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEE 181
WNFN+WGG +DGCY DWS DL V+RKIL+ ER+PRF HS +LEGGSIHVDGEGTCL TEE
Sbjct: 120 WNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSXILEGGSIHVDGEGTCLVTEE 179
Query: 182 CLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 219
CLLNKNRNPH +K QIE ELK YLGV IWLPRGL+G
Sbjct: 180 CLLNKNRNPHXSKEQIEEELKKYLGVQSFIWLPRGLYG 217
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/105 (66%), Positives = 79/105 (75%), Gaps = 7/105 (6%)
Query: 211 IWLPRGLF-------GMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEA 263
+++P L+ G+ DGEA PRLAGTRLAASYVNFYIANGGII PQFGD D EA
Sbjct: 276 LYIPEPLYXTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEA 335
Query: 264 VRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAK 308
+RVLS FP + VVGIE AREIVL GGNIH ITQQQPA PT+ A+
Sbjct: 336 IRVLSDTFPHHSVVGIENAREIVLAGGNIHXITQQQPAEPTSVAE 380
>pdb|1VKP|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g08170, Agmatine Iminohydrolase
pdb|1VKP|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g08170, Agmatine Iminohydrolase
pdb|2Q3U|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g08170,
Agmatine Iminohydrolase
pdb|2Q3U|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g08170,
Agmatine Iminohydrolase
Length = 383
Score = 323 bits (827), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 151/218 (69%), Positives = 170/218 (77%), Gaps = 3/218 (1%)
Query: 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEP 61
E +PA HGY PAEW+ H+Q W+GWP ER DNWR +AL AQRVFA VA AISKFEP
Sbjct: 3 ESRESPAEHGYYXPAEWDSHAQTWIGWP---ERQDNWRHNALPAQRVFAGVAKAISKFEP 59
Query: 62 VTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGID 121
VTVCAS AQWENAR QLPE+IRV+E S N SWFRD+GPT +V K + +AGID
Sbjct: 60 VTVCASPAQWENARKQLPEDIRVVEXSXNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGID 119
Query: 122 WNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEE 181
WNFN+WGG +DGCY DWS DL V+RKIL+ ER+PRF HS +LEGGSIHVDGEGTCL TEE
Sbjct: 120 WNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSXILEGGSIHVDGEGTCLVTEE 179
Query: 182 CLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 219
CLLNKNRNPH +K QIE ELK YLGV IWLPRGL+G
Sbjct: 180 CLLNKNRNPHXSKEQIEEELKKYLGVQSFIWLPRGLYG 217
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 80/105 (76%), Gaps = 7/105 (6%)
Query: 211 IWLPRGLF-------GMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEA 263
+++P L+ G+ DGEA PRLAGTRLAASYVNFYIANGGII PQFGD D EA
Sbjct: 276 LYIPEPLYXTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEA 335
Query: 264 VRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAK 308
+RVLS FP + VVGIE AREIVL GGNIHCITQQQPA PT+ A+
Sbjct: 336 IRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPTSVAE 380
>pdb|3H7C|X Chain X, Crystal Structure Of Arabidopsis Thaliana Agmatine
Deiminase From Cell Free Expression
Length = 383
Score = 322 bits (826), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 151/218 (69%), Positives = 170/218 (77%), Gaps = 3/218 (1%)
Query: 2 EMNGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEP 61
E +PA HGY PAEW+ H+Q W+GWP ER DNWR +AL AQRVFA VA AISKFEP
Sbjct: 3 ESRESPAEHGYYXPAEWDSHAQTWIGWP---ERQDNWRHNALPAQRVFAGVAKAISKFEP 59
Query: 62 VTVCASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGID 121
VTVCAS AQWENAR QLPE+IRV+E S N SWFRD+GPT +V K + +AGID
Sbjct: 60 VTVCASPAQWENARKQLPEDIRVVEXSXNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGID 119
Query: 122 WNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEE 181
WNFN+WGG +DGCY DWS DL V+RKIL+ ER+PRF HS +LEGGSIHVDGEGTCL TEE
Sbjct: 120 WNFNAWGGANDGCYNDWSHDLLVSRKILALERIPRFQHSXILEGGSIHVDGEGTCLVTEE 179
Query: 182 CLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFG 219
CLLNKNRNPH +K QIE ELK YLGV IWLPRGL+G
Sbjct: 180 CLLNKNRNPHXSKEQIEEELKKYLGVQSFIWLPRGLYG 217
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 80/105 (76%), Gaps = 7/105 (6%)
Query: 211 IWLPRGLF-------GMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEA 263
+++P L+ G+ DGEA PRLAGTRLAASYVNFYIANGGII PQFGD D EA
Sbjct: 276 LYIPEPLYXTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPIRDKEA 335
Query: 264 VRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAK 308
+RVLS FP + VVGIE AREIVL GGNIHCITQQQPA PT+ A+
Sbjct: 336 IRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPTSVAE 380
>pdb|2JER|A Chain A, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|B Chain B, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|C Chain C, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|D Chain D, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|E Chain E, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|F Chain F, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|G Chain G, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction.
pdb|2JER|H Chain H, Agmatine Deiminase Of Enterococcus Faecalis Catalyzing Its
Reaction
Length = 389
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 127/213 (59%), Gaps = 12/213 (5%)
Query: 6 TPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVC 65
TP G+ MP E+EP + WM WP ER DNWRD Q F VA AIS+F P+ V
Sbjct: 9 TPKQDGFRMPGEFEPQEKVWMIWP---ERPDNWRDGGKPVQEAFTNVAKAISQFTPMNVV 65
Query: 66 ASAAQWENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFN 125
S Q++N R QLP I V EMS N +W RD GP+ V+N ++ G+DW FN
Sbjct: 66 VSQQQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHG--------EIRGVDWTFN 117
Query: 126 SWGGVDDGCYRDWSLDLQVARKILSTERLPRF-PHSMVLEGGSIHVDGEGTCLTTEECLL 184
+WGG+ DG Y W D VA+KI E + + VLEGGS HVDG+GT LTTE CLL
Sbjct: 118 AWGGLVDGLYFPWDQDDLVAQKICEIEHVDSYRTDDFVLEGGSFHVDGQGTVLTTEMCLL 177
Query: 185 NKNRNPHLTKGQIENELKAYLGVMKIIWLPRGL 217
++ RNP L+K IE +L YL V K++WL G+
Sbjct: 178 SEGRNPQLSKEAIEQKLCDYLNVEKVLWLGDGI 210
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 215 RGLFGMIHDGEAKPRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKY 274
+G F + PR G ASY+NF I N G+I PQ+GD+ D A+ + FP
Sbjct: 280 KGSFKIDFVEGTMPREDGDICIASYMNFLITNDGVIVPQYGDEN-DRLALEQVQTMFPDK 338
Query: 275 EVVGIERAREIVLGGGNIHCITQQQP 300
++VG+ E+V GGGNIH ITQQ+P
Sbjct: 339 KIVGVNTV-EVVYGGGNIHXITQQEP 363
>pdb|2EWO|A Chain A, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|B Chain B, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|C Chain C, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|D Chain D, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|E Chain E, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|F Chain F, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|G Chain G, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|H Chain H, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|I Chain I, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|J Chain J, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|K Chain K, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6.
pdb|2EWO|L Chain L, X-Ray Structure Of Putative Agmatine Deiminase Q8dw17,
Northeast Structural Genomics Target Smr6
Length = 377
Score = 194 bits (492), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 133/219 (60%), Gaps = 16/219 (7%)
Query: 4 NGTPALHGYLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVT 63
N TP G+ P E+E Q W WP R DNWR A AQ+ F +VA AIS+FEPV+
Sbjct: 7 NTTPKQDGFRXPGEFEKQKQIWXLWPWRN---DNWRLGAKPAQKAFLEVAEAISEFEPVS 63
Query: 64 VCASAAQWENARSQLPE----NIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAG 119
+C Q+ENA +++ E NIR+IE + + +W RD GPT +VN +
Sbjct: 64 LCVPPLQYENALARVSELGSHNIRIIEXTNDDAWIRDCGPTFLVNDKG--------DLRA 115
Query: 120 IDWNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFP-HSMVLEGGSIHVDGEGTCLT 178
+DW FN+WGG+ DG Y W D VARK+ E + + VLEGGSIHVDGEGT L
Sbjct: 116 VDWEFNAWGGLVDGLYFPWDQDALVARKVCEIEGVDSYKTKDFVLEGGSIHVDGEGTVLV 175
Query: 179 TEECLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGL 217
TE CLL+ +RNPHLTK IE++LK YL +K++W+ G+
Sbjct: 176 TEXCLLHPSRNPHLTKEDIEDKLKDYLNCVKVLWVKDGI 214
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 228 PRLAGTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVL 287
PR G ASY+NF I NGGII PQ+GD+ D A + + + FP +VVG+ R EI
Sbjct: 297 PREEGEXAIASYLNFLIVNGGIILPQYGDEN-DQLAKQQVQEXFPDRKVVGV-RTEEIAY 354
Query: 288 GGGNIHCITQQQPA 301
GGGNIHCITQQQPA
Sbjct: 355 GGGNIHCITQQQPA 368
>pdb|1XKN|A Chain A, Crystal Structure Of The Putative Peptidyl-Arginine
Deiminase From Chlorobium Tepidum, Nesg Target Ctr21
Length = 355
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 109/223 (48%), Gaps = 22/223 (9%)
Query: 12 YLMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTV-CASAAQ 70
Y P EW PH+ W+ WP +L++W VFA++A +S+ E V + A
Sbjct: 6 YFXPPEWAPHASTWLSWP---HKLESWPGKFEPVPAVFAELAYQLSRSETVNINVLDDAX 62
Query: 71 WENARSQLPEN---------IRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGID 121
AR L E I + N +W RD GP V+ + + KV +
Sbjct: 63 EAQARELLKERDPEGKYAERIVFHRIPTNDAWCRDHGPNYVIR----TQDGRRDKVI-XN 117
Query: 122 WNFNSWGGVDDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEE 181
W +N+WGG Y + D V ++ + LP VLEGG+I V+G G LTT
Sbjct: 118 WEYNAWGGK----YEPYDDDNAVPERVAKAQGLPXVSTGXVLEGGAIDVNGAGLLLTTTA 173
Query: 182 CLLNKNRNPHLTKGQIENELKAYLGVMKIIWLPRGLFGMIHDG 224
CLLN NRNP L K +IE +L+ YLG+ K++WL G+ G DG
Sbjct: 174 CLLNPNRNPSLGKAEIEAQLRRYLGIEKVLWLGDGIAGDDTDG 216
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 232 GTRLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGN 291
G RL ASY NFYIAN ++ P + + D +A+ +L Q FPK EVVGI+ +++ G G
Sbjct: 279 GERLPASYANFYIANTVVLVPTYRCPR-DQQAIDILQQCFPKREVVGID-CSDLIWGLGA 336
Query: 292 IHCITQQQPA 301
IHC+T ++PA
Sbjct: 337 IHCVTHEEPA 346
>pdb|1ZBR|A Chain A, Crystal Structure Of The Putative Arginine Deiminase From
Porphyromonas Gingivalis, Northeast Structural Genomics
Target Pgr3
pdb|1ZBR|B Chain B, Crystal Structure Of The Putative Arginine Deiminase From
Porphyromonas Gingivalis, Northeast Structural Genomics
Target Pgr3
Length = 349
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 139/351 (39%), Gaps = 82/351 (23%)
Query: 13 LMPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEP-VTVCASAAQ- 70
L EW P + WP ++R D W + F ++ATAI + E + VC +
Sbjct: 5 LFLPEWAPQEAVQLTWP--HDRTD-WAYXLDEVETCFVRIATAILRHERLIVVCPDRKRV 61
Query: 71 WENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGV 130
+ +L + E+ N +W RD G ++ P +A D+ FN WG
Sbjct: 62 FGLLPPELHHRLYCFELPSNDTWARDHGGISLLADGR-------PXIA--DFAFNGWGXK 112
Query: 131 -----DDGCYRDWSLDLQVARKILSTERLPRFPHSMVLEGGSIHVDGEGTCLTTEECLLN 185
D+ R A + RL + VLEGG++ DGEGT LTT+ CL
Sbjct: 113 FAAHHDNLITRRLHALGLFAEGVTLDNRL-----AFVLEGGALETDGEGTLLTTDSCLFE 167
Query: 186 KNRNPHLTKGQIENELKAYLGVMKIIWLPRG-LFGMIHDG--EAKPRLAGTR-------- 234
NRN L++ I + LK LGV +++ L G L G DG + R TR
Sbjct: 168 PNRNAGLSRTAIIDTLKESLGVSRVLSLRHGALAGDDTDGHIDTLARFVDTRTIVYVRSE 227
Query: 235 ---------------------------------------------LAASYVNFYIANGGI 249
L A+Y NF I NG +
Sbjct: 228 DPSDEHYSDLTAXEQELKELRRPDGQPYRLVPLPXAEALYDGADRLPATYANFLIINGAV 287
Query: 250 ITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQP 300
+ P + D D A+ V FP EV+GI+ R +V G++HC+T Q P
Sbjct: 288 LVPTY-DSHLDAVALSVXQGLFPDREVIGID-CRPLVKQHGSLHCVTXQYP 336
>pdb|3HVM|A Chain A, Agmatine Deiminase From Helicobacter Pylori
Length = 330
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 94/208 (45%), Gaps = 24/208 (11%)
Query: 14 MPAEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQ--- 70
M AE+E M +P + +W A+ F + I+K V VC
Sbjct: 4 MLAEFEKIQAILMAFPHEFS---DWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDTIG 60
Query: 71 WENARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGV 130
+E ++ LP + + ++ N +W RD G + N + +D+ FN WG
Sbjct: 61 YEMLKN-LP-GVEIAKVDTNDTWARDFGAISIENHGV---------LECLDFGFNGWG-- 107
Query: 131 DDGCYRDWSLDLQVARKILSTERLPRFPHSM--VLEGGSIHVDGEGTCLTTEECLLNKNR 188
+LD QV K+ S L +M VLEGGSI DG G+ LT +CLL KNR
Sbjct: 108 ---LKYPSNLDNQVNFKLKSLGFLKHPLKTMPYVLEGGSIESDGAGSILTNTQCLLEKNR 164
Query: 189 NPHLTKGQIENELKAYLGVMKIIWLPRG 216
NPHL + IE LK LG +++W G
Sbjct: 165 NPHLNQNGIETMLKKELGAKQVLWYSYG 192
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 185 NKNRNPHLTKGQIENELKAYLGVMKIIW--LPRGLFGMIHDGEAKPRLAGTRLAASYVNF 242
+KN + +++ ELK + + K + +P + I D + RL A+YVNF
Sbjct: 222 DKNDEHYTALKKMQEELKTFKKLDKTPYKLIPLEIPKAIFDENQQ------RLPATYVNF 275
Query: 243 YIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQ 298
+ N +I P + D K D + L Q P EV+G++ ++ G++HC+T Q
Sbjct: 276 LLCNDALIVPTYNDPK-DALILETLKQHTP-LEVIGVD-CNTLIKQHGSLHCVTMQ 328
>pdb|2CMU|A Chain A, Crystal Structure Of A Putative Peptidyl-Arginine
Deiminase
Length = 342
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 91/206 (44%), Gaps = 24/206 (11%)
Query: 16 AEWEPHSQCWMGWPVRYERLDNWRDDALHAQRVFAKVATAISKFEPVTVCASAAQ---WE 72
AE+E +P + +W A+ F + I+K V VC +E
Sbjct: 8 AEFEKIQAILXAFPHEFS---DWAYCIKEARESFLNIIQTIAKHAKVLVCVHTNDTIGYE 64
Query: 73 NARSQLPENIRVIEMSMNGSWFRDTGPTIVVNKSSASSGAQAPKVAGIDWNFNSWGGVDD 132
++ LP + + ++ N +W RD G + N + +D+ FN WG
Sbjct: 65 XLKN-LP-GVEIAKVDTNDTWARDFGAISIENHGV---------LECLDFGFNGWG---- 109
Query: 133 GCYRDWSLDLQVARKILSTERL--PRFPHSMVLEGGSIHVDGEGTCLTTEECLLNKNRNP 190
+LD QV K+ S L P VLEGGSI DG G+ LT +CLL KNRNP
Sbjct: 110 -LKYPSNLDNQVNFKLKSLGFLKHPLKTXPYVLEGGSIESDGAGSILTNTQCLLEKNRNP 168
Query: 191 HLTKGQIENELKAYLGVMKIIWLPRG 216
HL + IE LK LG +++W G
Sbjct: 169 HLNQNGIETXLKKELGAKQVLWYSYG 194
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 234 RLAASYVNFYIANGGIITPQFGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIH 293
RL A+YVNF + N +I P + D K D + L Q P EV+G++ ++ G++H
Sbjct: 269 RLPATYVNFLLCNDALIVPTYNDPK-DALILETLKQHTP-LEVIGVD-CNTLIKQHGSLH 325
Query: 294 CITQQ 298
C+T Q
Sbjct: 326 CVTXQ 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,132,882
Number of Sequences: 62578
Number of extensions: 424658
Number of successful extensions: 848
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 20
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)